Citrus Sinensis ID: 002407
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 927 | 2.2.26 [Sep-21-2011] | |||||||
| Q9XSC3 | 912 | WD repeat-containing prot | yes | no | 0.453 | 0.460 | 0.328 | 2e-63 | |
| Q498F0 | 912 | WD repeat-containing prot | N/A | no | 0.457 | 0.464 | 0.333 | 7e-63 | |
| Q9R037 | 908 | WD repeat-containing prot | yes | no | 0.456 | 0.465 | 0.324 | 9e-60 | |
| Q6NVE8 | 915 | WD repeat-containing prot | yes | no | 0.226 | 0.229 | 0.484 | 6e-56 | |
| Q6LA54 | 933 | Uncharacterized WD repeat | yes | no | 0.293 | 0.291 | 0.389 | 6e-56 | |
| Q5JSH3 | 913 | WD repeat-containing prot | yes | no | 0.226 | 0.230 | 0.484 | 7e-56 | |
| O60136 | 586 | Uncharacterized WD repeat | no | no | 0.314 | 0.498 | 0.315 | 1e-45 | |
| Q03177 | 834 | WD repeat-containing prot | yes | no | 0.363 | 0.404 | 0.307 | 6e-44 | |
| P32330 | 852 | 2-deoxy-glucose resistant | no | no | 0.321 | 0.349 | 0.290 | 3e-29 | |
| Q8N157 | 1196 | Jouberin OS=Homo sapiens | no | no | 0.225 | 0.174 | 0.290 | 2e-19 |
| >sp|Q9XSC3|WDR44_BOVIN WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 244 bits (624), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 169/515 (32%), Positives = 258/515 (50%), Gaps = 95/515 (18%)
Query: 293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRR---- 348
+IKNLD G+E L++ E ++ G +P+ +MRR
Sbjct: 356 VMIKNLDTGEEI---------------------PLSLAEEKLPTGINPLTLHIMRRTKEY 394
Query: 349 -QNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE 407
N + D L + + G + K+K + K + + SV K +E
Sbjct: 395 VSNDAAQSDDEEKLQSQQTDTDGGRLKQKTTQLK--KFLGKSVKRAKHL---------AE 443
Query: 408 KGGRRSSSATDDSQDVSFH------------GQERVRVRQYGKSCKDLTALYKCQEIQA- 454
+ G R+ + +D FH G R ++ K+ Y +I+
Sbjct: 444 EYGERAVNKVKSVRDEVFHTDQDDPSSSDDEGMPYTRPVKF-KAAHGFKGPYDFDQIKVV 502
Query: 455 ------HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508
H G++W++KFS GR LASAG+D V+ +W + K + N + +
Sbjct: 503 QDLSGEHMGAVWTMKFSHCGRLLASAGQDNVVRIWAL-----------KNAFDYFNNMRM 551
Query: 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK-------PIC 561
+ S SP S+N D V T DK P C
Sbjct: 552 KYNTEGRVSPSPSQ-----------ESLNSSKSDTDTGVCSGTDEDPDDKNAPFRQRPFC 600
Query: 562 SFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDR 621
++GH D+LDLSWSK+ LLSSSMDKTVRLWH+S + CL F H D+VT I F+P DDR
Sbjct: 601 KYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDR 660
Query: 622 YFISGSLDAKVRIWSIPERQVVDWNDLH---EMVTAACYTPDGQGALVGSYKGSCHLYNT 678
YF+SGSLD K+R+W+IP+++V WN++ +++TAA + +G+ A++G+Y G C Y+T
Sbjct: 661 YFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDT 720
Query: 679 SENKLQQKSPINLQNKKKRSHQ-RKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVH 735
L+ + I++++ + R+ RKITG + PG +++LVTS DSRIR+ D + L
Sbjct: 721 EH--LKYHTQIHVRSTRGRNKVGRKITGIEPLPG-ENKILVTSNDSRIRLYDLRDLSLSM 777
Query: 736 KFKGFRNTNSQISASLTANGRYVVSASEDSYVYVW 770
K+KG+ N++SQI AS + + Y+VS SED YVY+W
Sbjct: 778 KYKGYVNSSSQIKASFSHDFNYLVSGSEDKYVYIW 812
|
Downstream effector for RAB11. May be involved in vesicle recycling. Bos taurus (taxid: 9913) |
| >sp|Q498F0|WDR44_XENLA WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (619), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 171/512 (33%), Positives = 260/512 (50%), Gaps = 88/512 (17%)
Query: 293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRR---- 348
+IKNLD G+E L++ E ++ G +P+ +MRR
Sbjct: 359 VMIKNLDTGEEI---------------------PLSLAEEKLPTGINPLTLYIMRRTKEY 397
Query: 349 -QNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE 407
N + D ++ S G K K+K + K + + SV K +E
Sbjct: 398 VSNDAAQSDDEEKPQSHQSETDGGKLKQKTTQLK--KFLGKSVKRAKHL---------AE 446
Query: 408 KGGRRSSSATDDSQDVSFH------------GQERVRVRQYGKSCKDLTALYKCQEIQA- 454
+ G R+ + +D FH G R ++ K+ Y ++I+
Sbjct: 447 EYGERAVNKVKSVRDEVFHTDQDDPSSSDDEGMPYTRPVKF-KAAHGFKGPYDFEQIKVV 505
Query: 455 ------HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508
H G++W++KFS GR LASAG+D V+ +W +L+ D NM +
Sbjct: 506 QDLSGEHVGAVWTMKFSHCGRLLASAGQDNVVRIW----------VLKNAFDYFNNMRIK 555
Query: 509 ANG----SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ 564
N SP P+ S L++ G + D P P C ++
Sbjct: 556 YNTEGRVSPSPSQES---LNSSKSDTDGGVFSGTDDVDPDDKNAP-----FRQVPFCKYK 607
Query: 565 GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI 624
GH D+LDLSWSK+ LLSSSMDKTVRLWH+S + CL F H D+VT I F+P DDRYF+
Sbjct: 608 GHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFL 667
Query: 625 SGSLDAKVRIWSIPERQVVDWNDLH---EMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681
SGSLD K+R+W+IP+++V WN++ +++TAA + +G+ A++G+Y G C Y+T
Sbjct: 668 SGSLDGKLRLWNIPDKKVALWNEIDGQTKLITAANFCQNGKHAVIGTYDGRCIFYDTEH- 726
Query: 682 KLQQKSPINLQNKKKRSHQ-RKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFK 738
L+ + I++++ + R+ RKITG + PG +++LVTS DSRIR+ D + L K+K
Sbjct: 727 -LKYHTQIHVRSTRGRNRVGRKITGIEPLPG-ENKILVTSNDSRIRLYDLRDLSLSMKYK 784
Query: 739 GFRNTNSQISASLTANGRYVVSASEDSYVYVW 770
G N++SQI AS + + Y+VS SED YVY+W
Sbjct: 785 GCVNSSSQIKASFSHDFTYIVSGSEDKYVYIW 816
|
Downstream effector for rab11. May be involved in vesicle recycling. Xenopus laevis (taxid: 8355) |
| >sp|Q9R037|WDR44_RAT WD repeat-containing protein 44 OS=Rattus norvegicus GN=Wdr44 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (592), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 167/515 (32%), Positives = 258/515 (50%), Gaps = 92/515 (17%)
Query: 293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRR---- 348
+IKNLD G+E ++ +E ++ TG +P+ +MRR
Sbjct: 349 VMIKNLDTGEEIPLSLAEE--------KLPTGINPL----------TPLTLHIMRRTKEY 390
Query: 349 -QNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE 407
N + D L + + G + K+K + K + + SV K +E
Sbjct: 391 VSNDATQSDDEEKLQSQQTDTDGGRLKQKTTQLK--KFLGKSVKRAKHL---------AE 439
Query: 408 KGGRRSSSATDDSQDVSFH------------GQERVRVRQYGKSCKDLTALYKCQEIQA- 454
+ G R+ + +D FH G R ++ K+ Y +I+
Sbjct: 440 EYGERAINKVKSVRDEVFHTDQDDPSSSDDEGMPYTRPVKF-KAAHGFKGPYDFDQIKVV 498
Query: 455 ------HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508
H G++W++KFS GR LASAG+D ++ +W L+ D NM +
Sbjct: 499 QDLSGEHMGAVWTMKFSHCGRLLASAGQDNIVRIWA----------LKNAFDYFNNMRMK 548
Query: 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK-------PIC 561
N + + S++ D V T DK P C
Sbjct: 549 YNT------------EGRVSPSPSQESLSSSKSDTDMGVCSGTDEDPDDKNAPFRQRPFC 596
Query: 562 SFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDR 621
++GH D+LDLSWSK+ LLSSSMDKTVRLWH+S + CL F H D+VT I F+P DDR
Sbjct: 597 KYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDR 656
Query: 622 YFISGSLDAKVRIWSIPERQVVDWNDLH---EMVTAACYTPDGQGALVGSYKGSCHLYNT 678
YF+SGSLD K+R+W+IP+++V WN++ +++TAA + +G+ A++G+Y G C Y+T
Sbjct: 657 YFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDT 716
Query: 679 SENKLQQKSPINLQNKKKRSHQ-RKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVH 735
L+ + I++++ + R+ RKITG + PG +++LVTS DSRIR+ D + L
Sbjct: 717 EH--LKYHTQIHVRSTRGRNKVGRKITGIEPLPG-ENKILVTSNDSRIRLYDLRDLSLSM 773
Query: 736 KFKGFRNTNSQISASLTANGRYVVSASEDSYVYVW 770
K+KG+ N++SQI AS + + Y+VS SED YVY+W
Sbjct: 774 KYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIW 808
|
Downstream effector for RAB11. May be involved in vesicle recycling. Rattus norvegicus (taxid: 10116) |
| >sp|Q6NVE8|WDR44_MOUSE WD repeat-containing protein 44 OS=Mus musculus GN=Wdr44 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (559), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 106/219 (48%), Positives = 156/219 (71%), Gaps = 9/219 (4%)
Query: 558 KPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNP 617
+P C ++GH D+LDLSWSK+ LLSSSMDKTVRLWH+S + CL F H D+VT I F+P
Sbjct: 600 RPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHP 659
Query: 618 VDDRYFISGSLDAKVRIWSIPERQVVDWNDLH---EMVTAACYTPDGQGALVGSYKGSCH 674
DDRYF+SGSLD K+R+W+IP+++V WN++ +++TAA + +G+ A++G+Y G C
Sbjct: 660 RDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCI 719
Query: 675 LYNTSENKLQQKSPINLQNKKKRSHQ-RKITGFQFAPGSSSEVLVTSADSRIRVVD--GI 731
Y+T L+ + I++++ + R+ RKITG + PG +++LVTS DSRIR+ D +
Sbjct: 720 FYDTEH--LKYHTQIHVRSTRGRNKVGRKITGIEPLPG-ENKILVTSNDSRIRLYDLRDL 776
Query: 732 DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVW 770
L K+KG+ N++SQI AS + + Y+VS SED YVY+W
Sbjct: 777 SLSMKYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIW 815
|
Downstream effector for RAB11. May be involved in vesicle recycling. Mus musculus (taxid: 10090) |
| >sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H5.08c PE=1 SV=2 | Back alignment and function description |
|---|
Score = 219 bits (559), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 174/321 (54%), Gaps = 49/321 (15%)
Query: 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTS 517
+IW++KFS DGRYLA G+D ++ +W V++SE H + S +P
Sbjct: 318 AIWAMKFSRDGRYLAVGGQDRILRIWAVLDSE------------HARSVASETCSSDP-- 363
Query: 518 LSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577
N L+L V S+ PI + GH D+LDLSWS+
Sbjct: 364 -------------------NNPKLNLKAPV-------FSEAPIREYAGHTADILDLSWSR 397
Query: 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
+ LLSSSMDKT RLWH K CL F HSD+VT I F+P DDR+F+SGSLD K+R+WSI
Sbjct: 398 NNFLLSSSMDKTARLWHPVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSI 457
Query: 638 PERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKR 697
E+ V WN+L E++TA ++PDG A+ G++ G C Y+T + + + I ++ K
Sbjct: 458 KEKAVSFWNELPELITAVAFSPDGGLAIAGTFVGLCLFYDTRGLRFRTQMSIR-SSRGKN 516
Query: 698 SHQRKITGFQFAP------GSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISA 749
+ K+TG Q +E+LVT+ DSRIR+ + D L KFKG N SQ A
Sbjct: 517 AKGSKVTGIQTRTQMIDNIAGDTEMLVTTNDSRIRIYNLRDKSLELKFKGHANAQSQNRA 576
Query: 750 SLTANGRYVVSASEDSYVYVW 770
+G YV+ SED V++W
Sbjct: 577 YFDDDGNYVICGSEDHQVFIW 597
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q5JSH3|WDR44_HUMAN WD repeat-containing protein 44 OS=Homo sapiens GN=WDR44 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 106/219 (48%), Positives = 156/219 (71%), Gaps = 9/219 (4%)
Query: 558 KPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNP 617
+P C ++GH D+LDLSWSK+ LLSSSMDKTVRLWH+S + CL F H D+VT I F+P
Sbjct: 598 RPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHP 657
Query: 618 VDDRYFISGSLDAKVRIWSIPERQVVDWNDLH---EMVTAACYTPDGQGALVGSYKGSCH 674
DDRYF+SGSLD K+R+W+IP+++V WN++ +++TAA + +G+ A++G+Y G C
Sbjct: 658 RDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCI 717
Query: 675 LYNTSENKLQQKSPINLQNKKKRSHQ-RKITGFQFAPGSSSEVLVTSADSRIRVVD--GI 731
Y+T L+ + I++++ + R+ RKITG + PG +++LVTS DSRIR+ D +
Sbjct: 718 FYDTEH--LKYHTQIHVRSTRGRNKVGRKITGIEPLPG-ENKILVTSNDSRIRLYDLRDL 774
Query: 732 DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVW 770
L K+KG+ N++SQI AS + + Y+VS SED YVY+W
Sbjct: 775 SLSMKYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIW 813
|
Downstream effector for RAB11. May be involved in vesicle recycling. Homo sapiens (taxid: 9606) |
| >sp|O60136|YNS5_SCHPO Uncharacterized WD repeat-containing protein C18H10.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC18H10.05 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 178/346 (51%), Gaps = 54/346 (15%)
Query: 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTS 517
S+W+ + S G+YLA+AG+D +I VW+V+E+ + E L K+ P+
Sbjct: 188 SVWASEISKSGKYLATAGKDAIIRVWKVIETPERRETLLKE-------------GPQ--- 231
Query: 518 LSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577
S P ++F +P+ GH +VL +SWSK
Sbjct: 232 ------------------------SCGRFFTPSSIF--EPEPVLECVGHNAEVLSISWSK 265
Query: 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
+ LL+SS D+TVRLWH S L +F H++ VTC+ F+P+DDRYF+SGSLD K+++WSI
Sbjct: 266 NDFLLTSSADRTVRLWHPKSTKSLAVFRHNEIVTCVAFHPIDDRYFVSGSLDCKIQLWSI 325
Query: 638 PERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKR 697
+++ W +L +V+ C+ PDG+ +VG + G C +Y T LQ S + + R
Sbjct: 326 LRHKILHWTELEYVVSTICFYPDGESIVVGMFYGLCAIYET--KNLQYVSSWLIHHSPSR 383
Query: 698 SHQRKITGFQFA---PGSSSE---VLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISA 749
+ + ++TG Q A P S VLV++ D+ IR+ + + LV K N ++ +
Sbjct: 384 NKKCRVTGLQCASIIPNDSKSDNVVLVSTNDNAIRLYNTVTHALVLKLSDAHRVNGRVLS 443
Query: 750 SLTANGRYVVSASEDSYVYVWKY--EAESRPSRSKSITVTHSYEHF 793
L+ + Y++S S+ + V +W + SR +S+ + E F
Sbjct: 444 RLSEDNSYIISGSDTNEVVLWHIPNKVLINASRKRSVILHLPTETF 489
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q03177|YMZ2_YEAST WD repeat-containing protein YMR102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR102C PE=1 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 208/387 (53%), Gaps = 50/387 (12%)
Query: 431 VRVRQYGKSCKDLTALYKCQEIQAHNG---------------SIWSIKFSLDGRYLASAG 475
+++ + K+ K L+ QE+ A+ G +IWS KFS DG+++A+
Sbjct: 133 IKMLKRRKNLKQFRRLFLAQELMAYEGETVTSTSKSSEPTSKAIWSTKFSRDGKFMATGS 192
Query: 476 EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH----LDNHLEKKR 531
+D I +W+V+ G +E+ E L+ +N S+ K L+N EK+
Sbjct: 193 KDGKIRIWKVI-----GSPVERAE---LDSSAESNKEARAKSMRIKQQVSSLNNPKEKQF 244
Query: 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVR 591
+ + + + VF + P+ ++ H+ DVLD++WSK+ +LS+SMDKTV+
Sbjct: 245 LDSATEKYEEKEKLLNLYAPVFHPT--PLRLYKEHVQDVLDINWSKNNFILSASMDKTVK 302
Query: 592 LWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM 651
LWH K LK F H D+VTC++F+P DDR+FISG LD K R+WSI + +V D ++
Sbjct: 303 LWHPDRKNSLKTFIHPDFVTCVEFHPTDDRFFISGCLDHKCRLWSILDDEVSFEYDCQDL 362
Query: 652 VTAACYTP-DGQGALVGSYKGSCHL-----------YNTSENKLQQKSP--INLQNKKKR 697
+T+ +P +G+ ++G++ G H+ ++ ++ + Q+++ + + K
Sbjct: 363 ITSVTLSPEEGKYTIIGTFNGYVHILMTRGLTPVSSFHVADRQTQEQNAHVMVTETDSKI 422
Query: 698 SHQRKITG---FQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGFRNTNSQISASLT 752
H ++TG F+ +S ++VTS DSRIR+ D L+ KGF + +SQ A L+
Sbjct: 423 RHGPRVTGLQAFRSQLDNSFRLVVTSNDSRIRIFDLEQRKLLEVLKGFHSGSSQHKAQLS 482
Query: 753 A-NGR-YVVSASEDSYVYVWKYEAESR 777
+G+ VV++S+D +VY W+ ++ R
Sbjct: 483 IWHGQPIVVNSSDDHWVYGWRLKSSDR 509
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P32330|DGR2_YEAST 2-deoxy-glucose resistant protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DGR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 167/354 (47%), Gaps = 56/354 (15%)
Query: 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG-------------HLN 504
SI FS DG+Y+ +D +H+W+V+ S K + + E HL
Sbjct: 175 SICCCTFSHDGKYMVIGCKDGSLHLWKVINSPVKRSEMGRSEKSVSASRANSLKIQRHLA 234
Query: 505 MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ 564
+ NGS L P + G S K L L V VF + F
Sbjct: 235 SISSHNGSISSNDLKP-------SDQFEGPS---KQLHLYAPVFYSDVFRV-------FM 277
Query: 565 GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI 624
H D+LD +WSK+ L+++SMDKT +LWH K LK F H D+VT F P DDR+ I
Sbjct: 278 EHALDILDANWSKNGFLITASMDKTAKLWHPERKYSLKTFVHPDFVTSAIFFPNDDRFII 337
Query: 625 SGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKL 683
+G LD + R+WSI + +V D +++T+ +P G+ ++G++ G ++Y + L
Sbjct: 338 TGCLDHRCRLWSILDNEVSYAFDCKDLITSLTLSPPGGEYTIIGTFNG--YIYVLLTHGL 395
Query: 684 QQKSPINLQNKK----------------KRSHQRKITGFQ--FAPGSSS-EVLVTSADSR 724
+ S ++ +K K H +ITG Q F+ + ++VT+ DS+
Sbjct: 396 KFVSSFHVSDKSTQGTTKNSFHPSSEYGKVQHGPRITGLQCFFSKVDKNLRLIVTTNDSK 455
Query: 725 IRVVDGIDL--VHKFKGFRNTNSQISAS--LTANGRYVVSASEDSYVYVWKYEA 774
I++ D + + FKGF++ +S+ + N V + S+D + Y WK ++
Sbjct: 456 IQIFDLNEKKPLELFKGFQSGSSRHRGQFLMMKNEPVVFTGSDDHWFYTWKMQS 509
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q8N157|AHI1_HUMAN Jouberin OS=Homo sapiens GN=AHI1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 112/224 (50%), Gaps = 15/224 (6%)
Query: 565 GHLDDVLDLSWSKSQH-LLSSSMDKTVRLW--HLSSKTCLKIFSHSDYVTCIQFNPVDDR 621
GHL+ + DLSWSK H +L+SS D T R+W +++ ++ H +V +F+P
Sbjct: 652 GHLNIIYDLSWSKDDHYILTSSSDGTARIWKNEINNTNTFRVLPHPSFVYTAKFHPAVRE 711
Query: 622 YFISGSLDAKVRIWSIPERQ----VVDWNDLHE-MVTAACYTPDGQGALVGSYKGSCHLY 676
++G D+ +RIW + R+ +V D+H+ + + C+ +G G G ++
Sbjct: 712 LVVTGCYDSMIRIWKVEMREDSAILVRQFDVHKSFINSLCFDTEGHHMYSGDCTGVIVVW 771
Query: 677 NT--SENKLQQKS---PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD-G 730
NT N L+ IN + K+ I+ + P + +L+ + DS +R++D
Sbjct: 772 NTYVKINDLEHSVHHWTINKEIKETEFKGIPISYLEIHP-NGKRLLIHTKDSTLRIMDLR 830
Query: 731 IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774
I + KF G N +I ++LT G ++ + SED VYVW E
Sbjct: 831 ILVARKFVGAANYREKIHSTLTPCGTFLFAGSEDGIVYVWNPET 874
|
Component of the tectonic-like complex, a complex localized at the transition zone of primary cilia and acting as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 927 | ||||||
| 449446949 | 918 | PREDICTED: WD repeat-containing protein | 0.952 | 0.961 | 0.665 | 0.0 | |
| 225461381 | 880 | PREDICTED: WD repeat-containing protein | 0.916 | 0.965 | 0.683 | 0.0 | |
| 255587360 | 944 | WD-repeat protein, putative [Ricinus com | 0.934 | 0.917 | 0.663 | 0.0 | |
| 224117222 | 882 | predicted protein [Populus trichocarpa] | 0.692 | 0.727 | 0.806 | 0.0 | |
| 224128378 | 799 | predicted protein [Populus trichocarpa] | 0.694 | 0.806 | 0.802 | 0.0 | |
| 18400779 | 883 | transducin/WD40 domain-containing protei | 0.898 | 0.943 | 0.598 | 0.0 | |
| 356542264 | 766 | PREDICTED: WD repeat-containing protein | 0.662 | 0.801 | 0.749 | 0.0 | |
| 356514768 | 863 | PREDICTED: WD repeat-containing protein | 0.678 | 0.728 | 0.728 | 0.0 | |
| 356545392 | 841 | PREDICTED: WD repeat-containing protein | 0.678 | 0.747 | 0.716 | 0.0 | |
| 302143045 | 749 | unnamed protein product [Vitis vinifera] | 0.711 | 0.881 | 0.685 | 0.0 |
| >gi|449446949|ref|XP_004141232.1| PREDICTED: WD repeat-containing protein 44-like [Cucumis sativus] gi|449498657|ref|XP_004160597.1| PREDICTED: WD repeat-containing protein 44-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1174 bits (3038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/934 (66%), Positives = 733/934 (78%), Gaps = 51/934 (5%)
Query: 16 CFYESLDRLVTSSSNSCTTSSSS-DSEPDNPNRNPDSPNYEFRVPKFPMGVSTKYDVWIS 74
CFYESLDR+ +S S S + S DS ++PN + + P F +PKFPM VS YD+WIS
Sbjct: 14 CFYESLDRIASSGSCSTSNSDDDRDSIVNSPNYDSEHP---FPIPKFPMAVSN-YDIWIS 69
Query: 75 EPISVSERRSRLLREMGLSHDRALARAKPGSEVQDRGMGNGDFGRSASTDQLTKQDQVCS 134
EP SV ERRSRLLREMGLS D +L+RA E+ + G GDFGRS S+D LT Q Q
Sbjct: 70 EPASVLERRSRLLREMGLSGDPSLSRANTALELDHKEKGVGDFGRSVSSDYLTSQQQQPP 129
Query: 135 SSSSNVRDGGVSVTIVRSKSDGAKSSSGCDRDGSGRHRHQLSVCSPSILSIHCSSLDSPR 194
+ I+RSKSDG S+ C+R+ S S S S + C+ S
Sbjct: 130 A-------------IIRSKSDG---SADCNRNMSS------SQASGSDTNNQCN-YSSSI 166
Query: 195 VNNGNSNDNDSSNVSYNVDQNQSVLVRKSPSGNSNNGSSPVASAALSNKPPTGRNCKRMD 254
+ + + + + + N++ +V KS S S+ G+ V+ AA +KPP+G+NC+ D
Sbjct: 167 SSPSILSFHSVNETTTSFANNRNRVVVKSRSCKSD-GAPSVSFAASQHKPPSGKNCRWAD 225
Query: 255 ESRGDSMSINGNGN----YIGNSG----EVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVV 306
ESR DS+ +N N + + +G EV D + + V E+ C IK+LDNGKEFVV
Sbjct: 226 ESRSDSLVVNANSDPDPSLMSQNGVNRREVSGDSVCSTSGKVNEEACTIKDLDNGKEFVV 285
Query: 307 NEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVEEGNKDSFDLNNNGS 366
NEI EDG W K+KEVGTGRQLT+EEFEMCVGHSPIVQELMRRQNVE+G D+ DLN NG
Sbjct: 286 NEITEDGMWNKLKEVGTGRQLTMEEFEMCVGHSPIVQELMRRQNVEDGCNDNNDLNANGD 345
Query: 367 SGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFH 426
+G K KKKG WFKSI++VAS+V G KERRSSDERDTSSEKGGRRSSSATDDSQDVSFH
Sbjct: 346 TGSSSKLKKKGGWFKSIKSVASTVKGQKERRSSDERDTSSEKGGRRSSSATDDSQDVSFH 405
Query: 427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486
G ERVRVRQYGKS K+L+ALYK QEIQAH+GSIW+IKFSLDG+YLASAGED +IHVWQVV
Sbjct: 406 GPERVRVRQYGKSSKELSALYKSQEIQAHSGSIWTIKFSLDGKYLASAGEDRIIHVWQVV 465
Query: 487 ESERKGELL-EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS-INRKSLSLD 544
ESE+KG+LL EK EDG+L+ L AN SPEPTSLSP ++D+H EKKRRGRS I+RKS+SL+
Sbjct: 466 ESEKKGDLLMEKPEDGNLSFLFAANESPEPTSLSP-NVDSHHEKKRRGRSSISRKSVSLE 524
Query: 545 HMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF 604
H++VP+TVF LS+KPICSFQGHLD VLDLSWSKSQHLLSSSMDKTVRLWHLS+ +CLKIF
Sbjct: 525 HVIVPDTVFGLSEKPICSFQGHLDVVLDLSWSKSQHLLSSSMDKTVRLWHLSNNSCLKIF 584
Query: 605 SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGA 664
SHSDYVTCIQFNP+DDRYFISGSLDAKVRIWSIP+ QVVDW+DLHEMVTAACYTPDG+GA
Sbjct: 585 SHSDYVTCIQFNPIDDRYFISGSLDAKVRIWSIPDHQVVDWSDLHEMVTAACYTPDGKGA 644
Query: 665 LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724
LVGSYKGSC LY+TSENK+QQKS INLQNKKK+S +KITGFQFAPGSSSEVL+TSADSR
Sbjct: 645 LVGSYKGSCRLYSTSENKMQQKSEINLQNKKKKSSHKKITGFQFAPGSSSEVLITSADSR 704
Query: 725 IRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSI 784
IRVVDG+DLV +FKGFRNTNSQISA L++NGRYV+SASEDS+VYVWK+EA+SRPSRSK +
Sbjct: 705 IRVVDGVDLVQRFKGFRNTNSQISACLSSNGRYVISASEDSHVYVWKHEADSRPSRSKGV 764
Query: 785 TVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTY----------LDEFSTANHPPTPVEEI 834
TV SYEHFHCQDVSVAIPWPG+GDTWGL D Y +DE S+ANHPP+PVE
Sbjct: 765 TVVRSYEHFHCQDVSVAIPWPGMGDTWGLNDDYCGDDNVIENHIDEVSSANHPPSPVEAE 824
Query: 835 SGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTAR-NRSPRTSLDISN 893
+G+ED A+G TNSPL+GT+SSATNSYFFDRISATWPEEKL+L R NRSP +S+DI++
Sbjct: 825 NGSEDSVLASGCTNSPLHGTLSSATNSYFFDRISATWPEEKLILNTRNNRSPHSSMDIAS 884
Query: 894 GISSSISAWGMVIVTAGLRGEIRAYQNFGLPVRI 927
G+ SAWGMVIVTAGLRGEIR +QNFG PV+I
Sbjct: 885 GMFQGSSAWGMVIVTAGLRGEIRTFQNFGFPVKI 918
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225461381|ref|XP_002282052.1| PREDICTED: WD repeat-containing protein 44-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1154 bits (2986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 654/957 (68%), Positives = 738/957 (77%), Gaps = 107/957 (11%)
Query: 1 MSKTGGGGDEEDEDECFYESLDRLVTSSSNSCTTSSSSDSEPDNPNRNPDSPNYE----F 56
MSK GDE+D+DECFYESLDR+++SS + +++S D++P+ SPNY F
Sbjct: 1 MSK---AGDEDDDDECFYESLDRVLSSSCSCSSSNSDDDADPNA------SPNYASEHPF 51
Query: 57 RVPKFPMGVSTKYDVWISEPISVSERRSRLLREMGLSHDRALARAKPGSEVQDRGMGNGD 116
+PKFP+G S KYD+WISEP S+ ERRSRLLREMGLS+D +L+R KP DR NGD
Sbjct: 52 PIPKFPIGAS-KYDIWISEPSSIEERRSRLLREMGLSNDPSLSRVKP---TADRS--NGD 105
Query: 117 FGRSASTDQLTKQDQVCSSSSSNVRDGGVSVTIVRSKSDGAKSSSGCDRDGSGRHRHQLS 176
GRS S+D+L Q G V I RSKSDGAK C+ S
Sbjct: 106 IGRSVSSDRLAGQ-------------GEAGVVICRSKSDGAKDQ--CNS----------S 140
Query: 177 VCSPSILSIHCSSLDSPRVNNGNSNDNDSSNVSYNVDQNQSVLVRKSPSGNSNNGSSPVA 236
VCSP ILSI CS + N S LV +S + SP+A
Sbjct: 141 VCSPPILSI-CSVV------------------------NNSKLVNSR---SSGSNGSPIA 172
Query: 237 SAALS--NKPPTGRNCKRMDESRGDSM---------SINGNGNYIGNSGEVVEDFDGNGT 285
+AA + NKPPTG+ C+R+DE+RGDS S +G+GN G GE ED D N
Sbjct: 173 NAASASPNKPPTGKMCRRVDETRGDSTKSEPSFGRNSFSGSGN--GTGGECDEDSDCNVV 230
Query: 286 AGVA--EQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQ 343
A +Q C IKNLDNGKEFVVNE++EDG W K+KEVGT RQLT+EEFEMCVGHSPIVQ
Sbjct: 231 ARTVPHDQVCTIKNLDNGKEFVVNELREDGMWNKLKEVGTDRQLTMEEFEMCVGHSPIVQ 290
Query: 344 ELMRRQNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD 403
ELMRRQNVEEGNKD+ D+N NG GGG K KKKG WFKSIR+VASSVTGH+ERRSSDERD
Sbjct: 291 ELMRRQNVEEGNKDNLDINVNGGVGGGSKLKKKGGWFKSIRSVASSVTGHRERRSSDERD 350
Query: 404 TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIK 463
TSSEKGGRRSSSATDDSQ+VSFHG ER+RVRQYGKSCK+LTALYK QEIQAHNGSIWSIK
Sbjct: 351 TSSEKGGRRSSSATDDSQEVSFHGPERIRVRQYGKSCKELTALYKSQEIQAHNGSIWSIK 410
Query: 464 FSLDGRYLASAGEDCVIHVWQVVESERKGELL-EKQEDGHLNMLLLANGSPEPTSLSPKH 522
FSLDGRYLASAGEDCVIHVWQVVE+ERKG+LL EK EDG+LN+L +A+GSPEPTS+SP
Sbjct: 411 FSLDGRYLASAGEDCVIHVWQVVETERKGDLLTEKPEDGNLNLLFVASGSPEPTSMSPNV 470
Query: 523 LDNHLEKKRRG-RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW-SKSQH 580
+N EKKRRG S++RKS+SLDH+ VPETVF LS+KP CSFQGH DDVLDLSW SKSQ
Sbjct: 471 DNNSSEKKRRGRSSVSRKSVSLDHIKVPETVFGLSEKPFCSFQGHGDDVLDLSWSSKSQQ 530
Query: 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640
LLSSSMDKTVRLWHLSSK+CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP+R
Sbjct: 531 LLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDR 590
Query: 641 QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQ 700
QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSC LYNTSENKLQ K INLQNKKK+ H
Sbjct: 591 QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCRLYNTSENKLQPKGQINLQNKKKKPHH 650
Query: 701 RKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVS 760
+KITGFQFAPGSSSEVL+TSADSRIRV+DG+DL+HKFKGFRNTN QISAS+T NG+YVV
Sbjct: 651 KKITGFQFAPGSSSEVLITSADSRIRVIDGVDLIHKFKGFRNTNRQISASVTENGKYVVC 710
Query: 761 ASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTY--- 817
ASEDSYVYVWK+ ++RP RSK I VT SYEHFH QDVSVAIPWPG+GDTW LQD++
Sbjct: 711 ASEDSYVYVWKH--DTRPGRSKGIAVTRSYEHFHSQDVSVAIPWPGMGDTWELQDSFSGE 768
Query: 818 -------LDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISAT 870
LDE STANHPPTPVE I+G+E S + T+SPLNGTISSATN YFFDRISAT
Sbjct: 769 QIGLGSHLDEVSTANHPPTPVEYINGDEGSPSVSVCTSSPLNGTISSATNGYFFDRISAT 828
Query: 871 WPEEKLVLTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNFGLPVRI 927
WPEEKL+L +N SP S+D +NG SAWGMVIVTAGLRGEIR +QNFGLPVRI
Sbjct: 829 WPEEKLLLATKNTSPHASVDFANG-----SAWGMVIVTAGLRGEIRTFQNFGLPVRI 880
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255587360|ref|XP_002534244.1| WD-repeat protein, putative [Ricinus communis] gi|223525645|gb|EEF28134.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1145 bits (2961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 630/949 (66%), Positives = 721/949 (75%), Gaps = 83/949 (8%)
Query: 17 FYESLDRLVTSSSNSCTTSSSSDSEPDNPN-----RNPDSPNYEFRVPKFPMGVSTKYDV 71
FYESLDR+ +SS + ++S SD +P + + ++ Y F VPKF + YDV
Sbjct: 41 FYESLDRIASSSCSCSASNSDSDLDPTPAHFNSPPNSDNNNGYPFVVPKF-----SGYDV 95
Query: 72 WISEPISVSERRSRLLREMGLSHDRALARAKPGSEVQDRGMGNGDFGRSASTDQLTKQDQ 131
WISEP SVSERR RLL +MGL+ DRA KPG RSAS+D L+++
Sbjct: 96 WISEPASVSERRERLLHQMGLASDRA----KPG--------------RSASSDHLSREQP 137
Query: 132 VCSSSSSNVRDGGVSVTIVRSKSDGAKSSSGCDRDGSGRHRHQLSVCSPSILSIHCSSLD 191
S + IVRSKSDG S DRD + CS S+LS++
Sbjct: 138 GPGPGSCS------GCGIVRSKSDGGGGSR-LDRDDG-----DFNSCSSSLLSVY----- 180
Query: 192 SPRVNNGNSNDNDSSNVSYNVDQNQSVLVRKSPSGNSNNGSSPVASAALS-NKPPTGR-N 249
SPR+ + + D + N + D N S +GS +A+LS NKPP+G+ N
Sbjct: 181 SPRILSHDLMDVNKCNSNVGDDNNNSNNAVVV----GGDGSKRTLNASLSPNKPPSGKFN 236
Query: 250 CKRMDESRGDSMSINGNGNYIGNSGEVVEDFDGNGTAGV-----------------AEQG 292
++MD +R DS + NGN N + GE+ E+ D NG V + Q
Sbjct: 237 GRKMDVTRSDSTNSNGNLNGNWSLGELGEELDCNGVGRVDDTTRTSTTTITTSEAESTQV 296
Query: 293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVE 352
C IKNLDNGKEFV+NEI+EDGT K+KEVGTGRQLT+EEFEM VGHSPIVQELMRRQ VE
Sbjct: 297 CTIKNLDNGKEFVINEIREDGTLNKLKEVGTGRQLTMEEFEMSVGHSPIVQELMRRQIVE 356
Query: 353 EGNKDSFDLNNNGSSGGGM-KSKKKGSWFKSIRTVASSVTGH-KERRSSDERDTSSEKGG 410
+G ++S D NNNG G G+ K KKKGSWF+SIR+VA+ V G+ KERRSSDERDT SEKGG
Sbjct: 357 DGTRESLDSNNNGGVGSGVSKLKKKGSWFRSIRSVATGVKGNNKERRSSDERDTGSEKGG 416
Query: 411 RRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY 470
RRSSSATDDSQD SFHG ERVRVRQYGKS K+L+ALYK QEIQAHNGSIW IKFSLDGRY
Sbjct: 417 RRSSSATDDSQDTSFHGPERVRVRQYGKSFKELSALYKSQEIQAHNGSIWCIKFSLDGRY 476
Query: 471 LASAGEDCVIHVWQVVESERKGELL-EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529
LASAGEDCVIH+WQV+E+ERKGELL +K EDG+ N LL ANGSPEP+ LSP + H EK
Sbjct: 477 LASAGEDCVIHIWQVIETERKGELLIDKPEDGNFNFLLTANGSPEPSLLSPT-AEGHYEK 535
Query: 530 KRRGRS-INRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDK 588
KRRGRS I+RKSLSLDH+VVPETVFAL+DKPICSFQGHLDDVLDLSWSKSQHLLSSSMDK
Sbjct: 536 KRRGRSSISRKSLSLDHIVVPETVFALTDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDK 595
Query: 589 TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL 648
TVRLW LSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP+RQVVDWNDL
Sbjct: 596 TVRLWQLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWNDL 655
Query: 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708
HEMVTAACYTPDGQGALVGSYKGSC LY+TSENKLQQK INLQNKKK++H +KITGFQF
Sbjct: 656 HEMVTAACYTPDGQGALVGSYKGSCRLYSTSENKLQQKCQINLQNKKKKAHLKKITGFQF 715
Query: 709 APGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVY 768
A SSSEVL+TSADSR+RV+DG+DLVHKFKGFRN NSQISASLTANG+YVVSASEDSYVY
Sbjct: 716 ARESSSEVLITSADSRVRVIDGVDLVHKFKGFRNANSQISASLTANGKYVVSASEDSYVY 775
Query: 769 VWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDT----------YL 818
VWK+EAESRPSR+K +T+T SYEHFHCQDVSVAIPWPG+GD WGLQDT +L
Sbjct: 776 VWKHEAESRPSRNKGVTITRSYEHFHCQDVSVAIPWPGMGDIWGLQDTLPGEQNGLDNHL 835
Query: 819 DEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL 878
DE S ANHPPTPVEEIS N +S +G TNSPLNG I SATN YFFDRISATWPEEKL L
Sbjct: 836 DEVSIANHPPTPVEEISSNNGSQSLSGCTNSPLNGIICSATNGYFFDRISATWPEEKLNL 895
Query: 879 TARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNFGLPVRI 927
R SPR+S+DI++G+S ++SA+GMVIVTAGLRGEIR +QNFGLPVRI
Sbjct: 896 ATRTWSPRSSVDIASGMSQNMSAYGMVIVTAGLRGEIRTFQNFGLPVRI 944
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117222|ref|XP_002317512.1| predicted protein [Populus trichocarpa] gi|222860577|gb|EEE98124.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1084 bits (2803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/662 (80%), Positives = 585/662 (88%), Gaps = 20/662 (3%)
Query: 283 NGTAGVAEQG----CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGH 338
+G++ VA +G C IKNLDNGKEFVVNEI+EDG W K+KEVGTGRQLT+EEFEM VGH
Sbjct: 224 DGSSSVAAEGEVEVCTIKNLDNGKEFVVNEIREDGMWNKLKEVGTGRQLTMEEFEMSVGH 283
Query: 339 SPIVQELMRRQNVEEGNKDSFDLNNNGSSGGGM-KSKKKGSWFKSIRTVASSVTGHKERR 397
SPIVQELMRRQNVE+G + + D N NG GGG+ K KKKGSWF SIR+VA+SVT HKERR
Sbjct: 284 SPIVQELMRRQNVEDGTRGNLDSNANGGIGGGVTKFKKKGSWFGSIRSVANSVTRHKERR 343
Query: 398 SSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG 457
SSDERDT SE+GGRRSSSATDDSQDVSFHG ERVRVRQYG+S K+L+ALYK QEIQAHNG
Sbjct: 344 SSDERDTGSERGGRRSSSATDDSQDVSFHGPERVRVRQYGRSSKELSALYKSQEIQAHNG 403
Query: 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL-EKQEDGHLNMLLLANGSPEPT 516
SIWSIKFSLDGRYLASAGEDCVIH+WQV +SERKGELL EK +DG LN+LL+ANGSPEP
Sbjct: 404 SIWSIKFSLDGRYLASAGEDCVIHIWQVKQSERKGELLMEKPDDGGLNLLLIANGSPEPN 463
Query: 517 SLSPKHLDNHLEKKRRGRS-INRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW 575
LSP +D+HLEKKRRGRS I+RKSLSLDH+ VPETVF+L+DKPICSFQGHLDDVLDLSW
Sbjct: 464 LLSPL-VDSHLEKKRRGRSSISRKSLSLDHIFVPETVFSLTDKPICSFQGHLDDVLDLSW 522
Query: 576 SKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635
SKSQHLLSSSMDKTVRLWH+SSKTCLK+FSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW
Sbjct: 523 SKSQHLLSSSMDKTVRLWHMSSKTCLKVFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW 582
Query: 636 SIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK 695
SIP+RQVVDWNDLHEMVTAACYTPDGQGALVGS+KGSC LYNTSENKLQQK INLQNKK
Sbjct: 583 SIPDRQVVDWNDLHEMVTAACYTPDGQGALVGSHKGSCRLYNTSENKLQQKCQINLQNKK 642
Query: 696 KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANG 755
K +H +KITGFQFAPGSSSEVL+TSADSRIRV+DG DLVHKFKGFRNTNSQISASLT NG
Sbjct: 643 K-AHLKKITGFQFAPGSSSEVLITSADSRIRVIDGFDLVHKFKGFRNTNSQISASLTTNG 701
Query: 756 RYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQD 815
+YVVSASEDSYVYVWK+EA+SR SRSK +T+T SYEHF CQDVSVAIPWPG+ DTWGLQD
Sbjct: 702 KYVVSASEDSYVYVWKHEADSRLSRSKGVTITRSYEHFLCQDVSVAIPWPGMADTWGLQD 761
Query: 816 T----------YLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFD 865
T +LDE S NHPPTPVEE S NE +S TG TNSP+NG ISSATN YFFD
Sbjct: 762 TLSGEQNGLDNHLDEVSIVNHPPTPVEEAS-NEGSQSLTGCTNSPMNGIISSATNGYFFD 820
Query: 866 RISATWPEEKLVLTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNFGLPV 925
RISATWPEEKL L R RS S+DISNG+S ++SA+GMVIVTAGLRGEIR +QNFGLPV
Sbjct: 821 RISATWPEEKLDLATRTRSHHASVDISNGLSQNVSAYGMVIVTAGLRGEIRTFQNFGLPV 880
Query: 926 RI 927
RI
Sbjct: 881 RI 882
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128378|ref|XP_002329147.1| predicted protein [Populus trichocarpa] gi|222869816|gb|EEF06947.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1065 bits (2755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/663 (80%), Positives = 584/663 (88%), Gaps = 19/663 (2%)
Query: 282 GNGTAGVAEQG----CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVG 337
G+ V ++G C IKNLDNGKEFVVNEI+EDG W K+KEVGTGRQLT+EEFEM VG
Sbjct: 139 GDTDGAVVDEGGSRVCTIKNLDNGKEFVVNEIREDGMWNKLKEVGTGRQLTMEEFEMSVG 198
Query: 338 HSPIVQELMRRQNVEEGNKDSFDLNNNGSSGGGM-KSKKKGSWFKSIRTVASSVTGHKER 396
HSPIVQELMRRQ VE+G +++ D + NG GGG+ K KKKGSWF+SI++VA+SVTG+KER
Sbjct: 199 HSPIVQELMRRQIVEDGTRENLDADANGGIGGGVSKFKKKGSWFRSIKSVANSVTGNKER 258
Query: 397 RSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN 456
RSSDERDT SEKGGRRSSSATDDSQDVSFHG ERVRVRQYG+ K+L+ALYK QEIQAHN
Sbjct: 259 RSSDERDTGSEKGGRRSSSATDDSQDVSFHGPERVRVRQYGRPSKELSALYKSQEIQAHN 318
Query: 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL-EKQEDGHLNMLLLANGSPEP 515
GSIWSIKFSLDGRYLASAGEDCVI++WQVVESERKGELL EK DG LN+LL+ANGSPEP
Sbjct: 319 GSIWSIKFSLDGRYLASAGEDCVINIWQVVESERKGELLMEKPYDGGLNLLLMANGSPEP 378
Query: 516 TSLSPKHLDNHLEKKRRGRS-INRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS 574
LSP +D H EKKRRGRS I+RKSLSLDH+++PETVFAL+DKPICSF+GHLDDVLDLS
Sbjct: 379 NLLSPL-VDTHQEKKRRGRSSISRKSLSLDHIIMPETVFALTDKPICSFEGHLDDVLDLS 437
Query: 575 WSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRI 634
WSKSQHLLSSSMDKTVRLWHLSS TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRI
Sbjct: 438 WSKSQHLLSSSMDKTVRLWHLSSNTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRI 497
Query: 635 WSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK 694
WSIP+RQVVDWNDLHE+VTAACYTPDGQGALVGSYKGSC LYNT ENKLQQK INLQNK
Sbjct: 498 WSIPDRQVVDWNDLHEIVTAACYTPDGQGALVGSYKGSCCLYNTCENKLQQKCQINLQNK 557
Query: 695 KKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTAN 754
KK++H +KITGFQFAPGSSSEV+VTSADSRIRV+DG+DLVHKFKGFRNTNSQISASLTAN
Sbjct: 558 KKKAHLKKITGFQFAPGSSSEVIVTSADSRIRVIDGVDLVHKFKGFRNTNSQISASLTAN 617
Query: 755 GRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQ 814
G+YVVSASEDSYVYVWK+EA+SR SRSK +TVT SYEHFHCQD SVAIPWPG+GDTW LQ
Sbjct: 618 GKYVVSASEDSYVYVWKHEADSRLSRSKGVTVTSSYEHFHCQDASVAIPWPGMGDTWELQ 677
Query: 815 DT----------YLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFF 864
DT +LDE S NHPPTPVEE S E +S +G TNSPLNG ISSATN YFF
Sbjct: 678 DTLSGEQSGLDNHLDEVSIVNHPPTPVEEAS-IEGSQSLSGCTNSPLNGIISSATNGYFF 736
Query: 865 DRISATWPEEKLVLTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNFGLP 924
DRISATWPEEKL L R RSP S+DISNG+S S+SA+GMVIVTAGLRGEIR +QNFGLP
Sbjct: 737 DRISATWPEEKLNLATRTRSPHASVDISNGLSESVSAYGMVIVTAGLRGEIRTFQNFGLP 796
Query: 925 VRI 927
VRI
Sbjct: 797 VRI 799
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18400779|ref|NP_566515.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|13937211|gb|AAK50098.1|AF372960_1 AT3g15470/MJK13_13 [Arabidopsis thaliana] gi|7021732|gb|AAF35413.1| unknown protein [Arabidopsis thaliana] gi|15795112|dbj|BAB02376.1| WD-40 repeat protein-like [Arabidopsis thaliana] gi|19548013|gb|AAL87370.1| AT3g15470/MJK13_13 [Arabidopsis thaliana] gi|332642159|gb|AEE75680.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 994 bits (2570), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/961 (59%), Positives = 673/961 (70%), Gaps = 128/961 (13%)
Query: 7 GGDEEDEDECFYESLDRLVTS-------------SSNSCTTSSSSDSEPDNPNRNPDSPN 53
GGD D CFYESLDRL +S S +S SS++ + +
Sbjct: 11 GGDTND---CFYESLDRLASSSSCSCSASNSDYDSESSPRISSAASHDSEELYGGGRRRR 67
Query: 54 YEFRVPKFPMGVSTKYDVWISEPISVSERRSRLLREMGLSHDRALARAKP---GSEVQDR 110
Y F VP+FPMG S K+DVW SEP SVSERRS+LL EMGLS D L+R KP S +D
Sbjct: 68 YPFPVPRFPMGAS-KFDVWTSEPASVSERRSKLLNEMGLSRDPVLSRLKPVSDSSSSKDT 126
Query: 111 GMGNGDFGRSASTDQLTKQDQ-VCSSSSSNVRDGGVSVTIVRSKSDGAKSSSGCDRDGSG 169
G + RS S +QL ++D CS S GG + IVRSKSD
Sbjct: 127 GAAGFEISRSISCNQLARRDHGECSESV-----GGCASCIVRSKSD-------------- 167
Query: 170 RHRHQLSVCSPSILSIHCSSLDSPRVNNGNSNDNDSSNVSYNVDQNQSVLVRKSPSGNSN 229
I + C D + GN S +S + + + SP N +
Sbjct: 168 ------------ITTSQCGDRDRRYTSPGNPCSCSVSKLSVHHSSHSEISRTSSPFVNCS 215
Query: 230 NGSSPVASAALSNKPPTGRNCKRMDESRGDSMSINGNGNYIGNSGEVVEDFDGNGTAGVA 289
GS DS+ +NG+ + +
Sbjct: 216 VGSVS-----------------------ADSLRLNGDSDCVLRES----------VVNEE 242
Query: 290 EQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ 349
+ C IKNLDNGKEFVVNEIQEDGTWKKVKEVGTG Q+T+EEFEMCVGHSPIVQELMRRQ
Sbjct: 243 VEVCTIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGTQMTMEEFEMCVGHSPIVQELMRRQ 302
Query: 350 NVEEGNKDSFDLNN---NGSSGGGMKSKKKGSWFKSIRTVASSVTGH-KERRSSDERDTS 405
NVE+ +K++ N N + KSKKKGSWFKSI++VASS+TGH KERRSSD+RDTS
Sbjct: 303 NVEDSDKNTSKENEDSGNSNKDNASKSKKKGSWFKSIKSVASSMTGHSKERRSSDDRDTS 362
Query: 406 SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFS 465
SE+GGRRSSSATDDSQ+ SFHG ERVRVRQYGKS K+LTALYK QEIQAHNGSIWSIKFS
Sbjct: 363 SERGGRRSSSATDDSQESSFHGPERVRVRQYGKSSKELTALYKTQEIQAHNGSIWSIKFS 422
Query: 466 LDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525
LDG+YLASAGEDC+IH+WQVVE+E+KGELL + +LL NGSPEPT++SP+
Sbjct: 423 LDGKYLASAGEDCIIHIWQVVEAEKKGELLLDRP---ELLLLATNGSPEPTTMSPR---- 475
Query: 526 HLEKKRRGR-SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSS 584
RRGR SI+RKSLSL+++ VP+++F LS+KP CSFQGH+DDVLDL+WSKSQHLLSS
Sbjct: 476 -----RRGRTSISRKSLSLENIFVPDSLFGLSEKPFCSFQGHVDDVLDLAWSKSQHLLSS 530
Query: 585 SMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644
SMDKTVRLW+LSS+TCLK+FSHSDYVTCIQFNPVDDRYFISGSLDAKVR+WSIP+RQVVD
Sbjct: 531 SMDKTVRLWNLSSQTCLKVFSHSDYVTCIQFNPVDDRYFISGSLDAKVRVWSIPDRQVVD 590
Query: 645 WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704
W DLHEMVT+ACYTPDGQG LVGSYKGSC +Y+ S+NKLQQKS INLQNKKK++HQ+KIT
Sbjct: 591 WYDLHEMVTSACYTPDGQGVLVGSYKGSCRMYSASDNKLQQKSQINLQNKKKKAHQKKIT 650
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASED 764
GFQF PGSSSEVLVTS+DSRIRVVDG DLV+K KGFRNT+SQISAS+TA+G+YVVSASED
Sbjct: 651 GFQFVPGSSSEVLVTSSDSRIRVVDGTDLVNKLKGFRNTSSQISASITADGKYVVSASED 710
Query: 765 SYVYVWKYEA-ESRPSRS---KSITVTHSYEHFHCQDVSVAIPWPGVGDT--WGLQD--- 815
S+VY+WKYE+ SRPSRS K++TVT+SYEHFH QDVS AI WPG+ T WG Q+
Sbjct: 711 SHVYIWKYESPASRPSRSNNNKNVTVTNSYEHFHSQDVSAAISWPGMASTENWGTQNRAG 770
Query: 816 -----TYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISAT 870
LD STANHPPTPV+++ E NSP NG ISSATN YFFDR+SAT
Sbjct: 771 FNGSTNNLDNISTANHPPTPVDQLGTVE-------RLNSPRNGIISSATNGYFFDRMSAT 823
Query: 871 WPEEKLVLTARNRSP-RTSLDI--SNGISSSISA-WGMVIVTAGLRGEIRAYQNFGLPVR 926
WPEEKL L ARNRS R S D+ SNG S ++SA WGMVIVTAGLRGEIR +QNFGLP+R
Sbjct: 824 WPEEKL-LFARNRSGNRLSTDMSSSNGNSGNVSASWGMVIVTAGLRGEIRTFQNFGLPIR 882
Query: 927 I 927
I
Sbjct: 883 I 883
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356542264|ref|XP_003539589.1| PREDICTED: WD repeat-containing protein 44-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/658 (74%), Positives = 558/658 (84%), Gaps = 44/658 (6%)
Query: 290 EQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ 349
E+ C I++LDNGKEFVVNE++ ++EV TGRQLT+EEFEM VGHSPIVQELMRRQ
Sbjct: 133 EELCTIRDLDNGKEFVVNELE------NLREVATGRQLTMEEFEMTVGHSPIVQELMRRQ 186
Query: 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGS-WFKSIRTVASSVTGHKERRSSDERDTSSEK 408
NVEE + DS + GG K KKKG+ W KSI++VASSV G+++RRSSDERDTSSEK
Sbjct: 187 NVEEASVDS--------NAGGSKVKKKGTGWLKSIKSVASSVAGYRDRRSSDERDTSSEK 238
Query: 409 GGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL 466
GGRRSSSATDDSQ+ +FHG ERVRV+QYGKSCK++TALYK QEIQAH+GSIWSIKFSL
Sbjct: 239 GGRRSSSATDDSQEGGGAFHGPERVRVKQYGKSCKEVTALYKSQEIQAHSGSIWSIKFSL 298
Query: 467 DGRYLASAGEDCVIHVWQVVESERKGELL----EKQEDGH--LNMLLLANGSPEPTSLSP 520
DG+YLASAGEDCVIHVWQVVE ERKGELL EK EDG+ ++M L+ NGSP
Sbjct: 299 DGKYLASAGEDCVIHVWQVVEGERKGELLLLDREKGEDGNGNVDMFLVVNGSPMADG--- 355
Query: 521 KHLDNHLEKKRRGRS-INRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ 579
E+KR+GRS ++RKSLSLD VVP+TVFAL+DKP+CSFQGHL DVLDLSWSK+Q
Sbjct: 356 -------ERKRKGRSSVSRKSLSLDQFVVPQTVFALTDKPVCSFQGHLHDVLDLSWSKTQ 408
Query: 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE 639
HLLSSSMDKTVRLWHLSSK+CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP+
Sbjct: 409 HLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPD 468
Query: 640 RQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSH 699
RQVVDW DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS INLQNKKK+SH
Sbjct: 469 RQVVDWTDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSH 528
Query: 700 QRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVV 759
+KITGFQFAPGSSSEVL+TSADSRIRVVDG+DLVHKFKGFRN S ISASLTANG+YVV
Sbjct: 529 HKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNATSPISASLTANGKYVV 588
Query: 760 SASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTY-- 817
+ASEDS+V++WK EA+ RP+RSK +TVT SYEHFHC+DVSVAIPWPG+GD W +QDT+
Sbjct: 589 AASEDSHVFIWKNEADCRPNRSKGVTVTRSYEHFHCKDVSVAIPWPGMGDEWDMQDTFSG 648
Query: 818 --------LDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISA 869
DE S+ANHPPTPVEE E RSA+GY+NSP + TI+SATNSYFFDRISA
Sbjct: 649 EQPEIDNHADEVSSANHPPTPVEENFVTEGSRSASGYSNSPRHATIASATNSYFFDRISA 708
Query: 870 TWPEEKLVLTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNFGLPVRI 927
TWPEEKL+L R +SPR S+D SNG+S +SAWGMVIVTAGLRGEIR +QNFGLP+RI
Sbjct: 709 TWPEEKLLLATRTQSPRVSMDFSNGVSKKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 766
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514768|ref|XP_003526075.1| PREDICTED: WD repeat-containing protein 44-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 955 bits (2468), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/664 (72%), Positives = 552/664 (83%), Gaps = 35/664 (5%)
Query: 291 QGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN 350
Q C I++LDNGKEFVV +EDG W +VKEVGTGR+LT+EEFEM VGHSPIVQELMRRQN
Sbjct: 208 QACTIRDLDNGKEFVV---KEDGVWNEVKEVGTGRRLTVEEFEMTVGHSPIVQELMRRQN 264
Query: 351 VEEGNKDSFDLNNNGSSGGGM---------KSKKKGSWFKSIRTVASSVTGHKERRSSDE 401
VEEG + GG K K+KG WFK + ++ S V G KERRS DE
Sbjct: 265 VEEGGNGEGVDGDRDGDGGVGGDDDEGDGGKVKRKGGWFKFM-SLKSVVVGQKERRSGDE 323
Query: 402 RDTS-SEKGG-RRSSSATDDSQDVS--FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG 457
+DTS SEKGG +RSSSATDDSQD HG ERVRVRQYGKS K++T LY+ EIQAH G
Sbjct: 324 KDTSLSEKGGGQRSSSATDDSQDGGGLVHGGERVRVRQYGKSFKEVTGLYRSPEIQAHEG 383
Query: 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL-EKQEDGHLNMLLLANGSPEPT 516
SIW IKFSLDGRYLASAGEDCVIHVWQVVESERKGELL EK EDG+LN++ L NGSPEP+
Sbjct: 384 SIWCIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLVEKPEDGNLNIMFLVNGSPEPS 443
Query: 517 SLSPKHLDNHLEKKRRGR-SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW 575
S +DN+ EKKRRGR S++RKSLSLD +VVPETVFAL++KP+CSF+GHL DVLDLSW
Sbjct: 444 S---PGMDNNSEKKRRGRLSVSRKSLSLDQLVVPETVFALTEKPVCSFKGHLHDVLDLSW 500
Query: 576 SKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635
SKSQ LLSSSMDKTVRLWHLSSK+CLK+FSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW
Sbjct: 501 SKSQRLLSSSMDKTVRLWHLSSKSCLKVFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW 560
Query: 636 SIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK 695
SIP+RQVVDW DLHEMVTAACYTPDGQGALVG+YKG CHLYNTSENKLQQKS INLQN+K
Sbjct: 561 SIPDRQVVDWADLHEMVTAACYTPDGQGALVGTYKGRCHLYNTSENKLQQKSQINLQNRK 620
Query: 696 KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANG 755
KRS+ +KITGFQF PGSSSEVL+TS+DSRIR+VDGI+LVHKFKGFRN NSQISA LTANG
Sbjct: 621 KRSNHKKITGFQFVPGSSSEVLITSSDSRIRLVDGIELVHKFKGFRNANSQISACLTANG 680
Query: 756 RYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQD 815
+YVVSASEDS+VY+WK EA+ RPSRSK +TVT +YEHFHC+DVSVAIPW G+ DTW + D
Sbjct: 681 KYVVSASEDSHVYIWKNEADCRPSRSKGVTVTSTYEHFHCKDVSVAIPWSGMDDTWEMHD 740
Query: 816 TYL------------DEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYF 863
+Y DE S+ANHPPTPVEE G+E + A+G NSPL+GTI+SAT+SYF
Sbjct: 741 SYFAEEPELDDDGDEDEVSSANHPPTPVEENLGSEGSQFASGCNNSPLHGTIASATDSYF 800
Query: 864 FDRISATWPEEKLVLTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNFGL 923
DRISATWPEEKL LT R+RSPR S+D+SNG++ ++SAWGMVIVTA L+GEI+ +QNFGL
Sbjct: 801 LDRISATWPEEKL-LTTRDRSPRVSVDLSNGVNQNMSAWGMVIVTASLQGEIKIFQNFGL 859
Query: 924 PVRI 927
P+ I
Sbjct: 860 PLGI 863
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356545392|ref|XP_003541127.1| PREDICTED: WD repeat-containing protein 44-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/662 (71%), Positives = 545/662 (82%), Gaps = 33/662 (4%)
Query: 291 QGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN 350
Q C I++LDNGKEFVV +EDG W +VKEVGTGR+LT+EEFEM VGHSPIVQELMRRQN
Sbjct: 188 QACTIRDLDNGKEFVV---KEDGVWNEVKEVGTGRRLTVEEFEMTVGHSPIVQELMRRQN 244
Query: 351 VEEGNKDSFDLNNNGSSGGGM---------KSKKKGSWFKSIRTVASSVTGHKERRSSDE 401
VEEG + G G G K K+KG WFK + ++ S V G KERRS DE
Sbjct: 245 VEEGGNGEGVDGDGGGGGVGGGGGDEGDGGKVKRKGGWFKFM-SLKSVVVGQKERRSGDE 303
Query: 402 RDTSS--EKGGRRSSSATDDSQDVS--FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG 457
RDTSS + GGRRSSSATDDSQD HG ERVRVRQYGKS K++T LY +IQAH G
Sbjct: 304 RDTSSSEKAGGRRSSSATDDSQDGGGLVHGGERVRVRQYGKSFKEVTGLYSSPKIQAHEG 363
Query: 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL-EKQEDGHLNMLLLANGSPEPT 516
SIW IKFSLDGRYLASAGEDC+IHVWQV ESERKGELL EK EDG+LN++ L NGSPEP+
Sbjct: 364 SIWCIKFSLDGRYLASAGEDCMIHVWQVFESERKGELLVEKPEDGNLNIMFLVNGSPEPS 423
Query: 517 SLSPKHLDNHLEKKRRGR-SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW 575
S +DN+ EKKRRGR S++RKSLSLD +VVPETVFAL++KP+CSF+GHL DVLDLSW
Sbjct: 424 SPG---MDNNSEKKRRGRLSVSRKSLSLDQLVVPETVFALTEKPVCSFKGHLHDVLDLSW 480
Query: 576 SKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635
SKSQ LLSSSMDKTVRLWHLSSK+CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW
Sbjct: 481 SKSQRLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW 540
Query: 636 SIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK 695
SIP+RQVVDW DLHEMVTAACYTPDGQG L+G+YKG CHLY +SENKLQQKS INLQN+K
Sbjct: 541 SIPDRQVVDWTDLHEMVTAACYTPDGQGVLIGTYKGRCHLYYSSENKLQQKSQINLQNRK 600
Query: 696 KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANG 755
KRS+ +KITGFQF PGSSSEVL+TS+DSRIR+VDG+DLVHKFKGFRN NSQISA LTANG
Sbjct: 601 KRSNHKKITGFQFVPGSSSEVLITSSDSRIRLVDGVDLVHKFKGFRNANSQISACLTANG 660
Query: 756 RYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQD 815
+YVVSASEDS+VY+WK EA+ RP+RSK + VT +YEHFHC+DVSVAIPWPG+ DTW + D
Sbjct: 661 KYVVSASEDSHVYIWKNEADCRPNRSKGVAVTSTYEHFHCKDVSVAIPWPGMDDTWEMHD 720
Query: 816 TYL----------DEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFD 865
Y DE +ANHPPTPVEE +E + A+G +SPL+GTI+SAT+SYF D
Sbjct: 721 PYFAEEPELDDDGDEVFSANHPPTPVEENLCSEGSQFASGCNSSPLHGTIASATDSYFLD 780
Query: 866 RISATWPEEKLVLTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNFGLPV 925
RISATWPEEKL LT R+RSP+ S+D+S G++ ++SAWGMVIVTAGL+GEI+ +QNFGLP+
Sbjct: 781 RISATWPEEKL-LTTRDRSPQVSVDLSKGVNQNMSAWGMVIVTAGLQGEIKIFQNFGLPL 839
Query: 926 RI 927
I
Sbjct: 840 GI 841
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143045|emb|CBI20340.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/735 (68%), Positives = 567/735 (77%), Gaps = 75/735 (10%)
Query: 198 GNSNDNDSSNVSYNVDQNQSVLVRKSPSGNSNNGSSPVASAALS--NKPPTGRNCKRMDE 255
G SND S V D++ + R SG+ NGS P+A+AA + NKPPTG+ C+R+DE
Sbjct: 85 GLSNDPSLSRVKPTADRSNGDIGRSVSSGS--NGS-PIANAASASPNKPPTGKMCRRVDE 141
Query: 256 SRGDSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTW 315
+RGDS +++ + +Q C IKNLDNGKEFVVNE++EDG W
Sbjct: 142 TRGDST--KSEPSFVPH-----------------DQVCTIKNLDNGKEFVVNELREDGMW 182
Query: 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVEEGNKDSFDLNNNGSSGGGMKSKK 375
K+KE EGNKD+ D+N NG GGG K KK
Sbjct: 183 NKLKE--------------------------------EGNKDNLDINVNGGVGGGSKLKK 210
Query: 376 KGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQ 435
KG WFKSIR+VASSVTGH+ERRSSDERDTSSEKGGRRSSSATDDSQ+VSFHG ER+RVRQ
Sbjct: 211 KGGWFKSIRSVASSVTGHRERRSSDERDTSSEKGGRRSSSATDDSQEVSFHGPERIRVRQ 270
Query: 436 YGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495
YGKSCK+LTALYK QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE+ERKG+LL
Sbjct: 271 YGKSCKELTALYKSQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVETERKGDLL 330
Query: 496 -EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLS-LDHMVVPETVF 553
EK EDG+LN+L +A+GSPEPTS+SP +N EKKRRGRS + LDH+ VPETVF
Sbjct: 331 TEKPEDGNLNLLFVASGSPEPTSMSPNVDNNSSEKKRRGRSSVSRKSVSLDHIKVPETVF 390
Query: 554 ALSDKPICSFQGHLDDVLDLSWSKSQHLLSSS-MDKTVRLWHLSSKTCLKIFSHSDYVTC 612
LS+KP CSFQGH DDVLDLSWS L SS MDKTVRLWHLSSK+CLKIFSHSDYVTC
Sbjct: 391 GLSEKPFCSFQGHGDDVLDLSWSSKSQQLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTC 450
Query: 613 IQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGS 672
IQFNPVDDRYFISGSLDAKVRIWSIP+RQVVDWNDLHEMVTAACYTPDGQGALVGSYKGS
Sbjct: 451 IQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWNDLHEMVTAACYTPDGQGALVGSYKGS 510
Query: 673 CHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID 732
C LYNTSENKLQ K INLQNKKK+ H +KITGFQFAPGSSSEVL+TSADSRIRV+DG+D
Sbjct: 511 CRLYNTSENKLQPKGQINLQNKKKKPHHKKITGFQFAPGSSSEVLITSADSRIRVIDGVD 570
Query: 733 LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEH 792
L+HKFKGFRNTN QISAS+T NG+YVV ASEDSYVYVWK+ ++RP RSK I VT SYEH
Sbjct: 571 LIHKFKGFRNTNRQISASVTENGKYVVCASEDSYVYVWKH--DTRPGRSKGIAVTRSYEH 628
Query: 793 FHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLN 852
FH QDVSVAIPWPG+GDTW LQD++ E +E I+G+E S + T+SPLN
Sbjct: 629 FHSQDVSVAIPWPGMGDTWELQDSFSGE---------QIEYINGDEGSPSVSVCTSSPLN 679
Query: 853 GTISSATNSYFFDRISATWPEEKLVLTARNRSPRTSLDISNGISSSISAWGMVIVTAGLR 912
GTISSATN YFFDRISATWPEEKL+L +N SP S+D +NG SAWGMVIVTAGLR
Sbjct: 680 GTISSATNGYFFDRISATWPEEKLLLATKNTSPHASVDFANG-----SAWGMVIVTAGLR 734
Query: 913 GEIRAYQNFGLPVRI 927
GEIR +QNFGLPVRI
Sbjct: 735 GEIRTFQNFGLPVRI 749
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 927 | ||||||
| TAIR|locus:2090146 | 883 | AT3G15470 "AT3G15470" [Arabido | 0.662 | 0.695 | 0.685 | 1.4e-249 | |
| TAIR|locus:2153443 | 825 | AT5G54200 "AT5G54200" [Arabido | 0.682 | 0.767 | 0.651 | 1.7e-233 | |
| TAIR|locus:2181733 | 905 | AT5G02430 "AT5G02430" [Arabido | 0.636 | 0.651 | 0.448 | 3.4e-143 | |
| TAIR|locus:2040731 | 903 | AT2G37670 "AT2G37670" [Arabido | 0.576 | 0.591 | 0.476 | 6.4e-138 | |
| TAIR|locus:2019494 | 647 | AT1G64610 "AT1G64610" [Arabido | 0.421 | 0.604 | 0.398 | 3.4e-94 | |
| TAIR|locus:2165700 | 709 | AT5G42010 "AT5G42010" [Arabido | 0.529 | 0.692 | 0.381 | 5.1e-90 | |
| TAIR|locus:2169769 | 698 | AT5G24320 "AT5G24320" [Arabido | 0.416 | 0.553 | 0.441 | 2.8e-84 | |
| TAIR|locus:2168606 | 654 | AT5G53500 "AT5G53500" [Arabido | 0.471 | 0.668 | 0.411 | 3.5e-84 | |
| TAIR|locus:2028539 | 593 | AT1G48870 [Arabidopsis thalian | 0.282 | 0.441 | 0.356 | 4.5e-64 | |
| UNIPROTKB|Q9XSC3 | 912 | WDR44 "WD repeat-containing pr | 0.362 | 0.368 | 0.357 | 1.2e-51 |
| TAIR|locus:2090146 AT3G15470 "AT3G15470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2228 (789.4 bits), Expect = 1.4e-249, Sum P(2) = 1.4e-249
Identities = 452/659 (68%), Positives = 519/659 (78%)
Query: 293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVE 352
C IKNLDNGKEFVVNEIQEDGTWKKVKEVGTG Q+T+EEFEMCVGHSPIVQELMRRQNVE
Sbjct: 246 CTIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGTQMTMEEFEMCVGHSPIVQELMRRQNVE 305
Query: 353 EGNKDSFDLNN---NXXXXXXXXXXXXXXXXXXIRTVASSVTGH-KXXXXXXXXXXXXXK 408
+ +K++ N N I++VASS+TGH K +
Sbjct: 306 DSDKNTSKENEDSGNSNKDNASKSKKKGSWFKSIKSVASSMTGHSKERRSSDDRDTSSER 365
Query: 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG 468
GGRRSSSATDDSQ+ SFHG ERVRVRQYGKS K+LTALYK QEIQAHNGSIWSIKFSLDG
Sbjct: 366 GGRRSSSATDDSQESSFHGPERVRVRQYGKSSKELTALYKTQEIQAHNGSIWSIKFSLDG 425
Query: 469 RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA-NGSPEPTSLSPKHLDNHL 527
+YLASAGEDC+IH+WQVVE+E+KGELL + + +LLLA NGSPEPT++SP+
Sbjct: 426 KYLASAGEDCIIHIWQVVEAEKKGELLLDRPE----LLLLATNGSPEPTTMSPR------ 475
Query: 528 EKKRRGR-SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXXM 586
RRGR SI+RKSLSL+++ VP+++F LS+KP CSFQGH+DDVLD M
Sbjct: 476 ---RRGRTSISRKSLSLENIFVPDSLFGLSEKPFCSFQGHVDDVLDLAWSKSQHLLSSSM 532
Query: 587 DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN 646
DKTVRLW+LSS+TCLK+FSHSDYVTCIQFNPVDDRYFISGSLDAKVR+WSIP+RQVVDW
Sbjct: 533 DKTVRLWNLSSQTCLKVFSHSDYVTCIQFNPVDDRYFISGSLDAKVRVWSIPDRQVVDWY 592
Query: 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGF 706
DLHEMVT+ACYTPDGQG LVGSYKGSC +Y+ S+NKLQQKS INLQNKKK++HQ+KITGF
Sbjct: 593 DLHEMVTSACYTPDGQGVLVGSYKGSCRMYSASDNKLQQKSQINLQNKKKKAHQKKITGF 652
Query: 707 QFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSY 766
QF PGSSSEVLVTS+DSRIRVVDG DLV+K KGFRNT+SQISAS+TA+G+YVVSASEDS+
Sbjct: 653 QFVPGSSSEVLVTSSDSRIRVVDGTDLVNKLKGFRNTSSQISASITADGKYVVSASEDSH 712
Query: 767 VYVWKYEAE-SRPSRS---KSITVTHSYEHFHCQDVSVAIPWPGVGDT--WGLQD----- 815
VY+WKYE+ SRPSRS K++TVT+SYEHFH QDVS AI WPG+ T WG Q+
Sbjct: 713 VYIWKYESPASRPSRSNNNKNVTVTNSYEHFHSQDVSAAISWPGMASTENWGTQNRAGFN 772
Query: 816 ---TYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWP 872
LD STANHPPTPV+++ E NSP NG ISSATN YFFDR+SATWP
Sbjct: 773 GSTNNLDNISTANHPPTPVDQLGTVERL-------NSPRNGIISSATNGYFFDRMSATWP 825
Query: 873 EEKLVLTARNRSP-RTSLDIS--NGISSSISA-WGMVIVTAGLRGEIRAYQNFGLPVRI 927
EEKL L ARNRS R S D+S NG S ++SA WGMVIVTAGLRGEIR +QNFGLP+RI
Sbjct: 826 EEKL-LFARNRSGNRLSTDMSSSNGNSGNVSASWGMVIVTAGLRGEIRTFQNFGLPIRI 883
|
|
| TAIR|locus:2153443 AT5G54200 "AT5G54200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2175 (770.7 bits), Expect = 1.7e-233, Sum P(2) = 1.7e-233
Identities = 432/663 (65%), Positives = 507/663 (76%)
Query: 275 EVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEM 334
++VE +G + EQ C I+NLD G+EFVVNE++EDG +++KEVGT RQLT+EEFE+
Sbjct: 183 DIVEKENGRDVV-LEEQMCTIRNLDTGREFVVNEVREDGMLERLKEVGTDRQLTLEEFEI 241
Query: 335 CVGHSPIVQELMRRQNVEEGNKDSFDLNNNXXXXXXXXXXXXXXXXXXIRTVASSVTGHK 394
CVG SPIV ELMRRQNVE+ KDS DL+ N I+ VASSVTG+K
Sbjct: 242 CVGTSPIVLELMRRQNVEDVCKDSVDLDTNVSGSRVTKHRRRGSWLKSIKNVASSVTGYK 301
Query: 395 XXXXXXXXXXXXXKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA 454
+GG+R SSATDDS+D+SFH ERV+VRQYGKSCK+LTAL+K QEIQA
Sbjct: 302 ERRSTDDRDSPSERGGQRFSSATDDSRDMSFHDPERVKVRQYGKSCKELTALFKSQEIQA 361
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL--EKQEDGHLNMLLLANGS 512
H GSIWSIKFSLDGRYLASAGEDCVI +W+VVESERKGELL +KQEDG +N+ LLANGS
Sbjct: 362 HKGSIWSIKFSLDGRYLASAGEDCVIQIWKVVESERKGELLSMDKQEDGSINLFLLANGS 421
Query: 513 PEPTSLSPKHLDNHLEKKRRGR-SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL 571
PEP S+SPK RRGR S +RKS+SLD+++VPE VF LS+KP+CSF GHLDDVL
Sbjct: 422 PEPVSMSPK---------RRGRTSFSRKSVSLDNVLVPEAVFGLSEKPVCSFVGHLDDVL 472
Query: 572 DXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAK 631
D MDKTVRLW LSSKTCLK+FSHSDYVTCIQFNPVDD YFISGSLDAK
Sbjct: 473 DLSWSKSQHLLSSSMDKTVRLWDLSSKTCLKVFSHSDYVTCIQFNPVDDNYFISGSLDAK 532
Query: 632 VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL 691
VRIWSIP+ QVVDWNDLHEMVTAACYTPDGQGALVGSYKG+C LYNT +NKLQQ+ INL
Sbjct: 533 VRIWSIPDHQVVDWNDLHEMVTAACYTPDGQGALVGSYKGTCCLYNTHDNKLQQRREINL 592
Query: 692 QNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASL 751
+N+KK++H +KITGFQF GSSSEVLVTSADSR RVVDG+DLVHKFKGFRNTNSQISASL
Sbjct: 593 KNRKKKTHHKKITGFQFVAGSSSEVLVTSADSRTRVVDGVDLVHKFKGFRNTNSQISASL 652
Query: 752 TANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPG-VGDT 810
T+NG+++VSASEDS VYVW Y+++SR RSK +TVT+SYE+F+C+DVSVA PWPG + +
Sbjct: 653 TSNGKFLVSASEDSNVYVWNYDSDSRAGRSKRVTVTNSYENFYCRDVSVAAPWPGKISNN 712
Query: 811 WGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISAT 870
F+ N+PPTPV + + N ++ T NG ISSATN YFFDR+SAT
Sbjct: 713 HTNNSPEQSSFTANNNPPTPVNDPTNN---KTVT-------NGIISSATNRYFFDRVSAT 762
Query: 871 WPEEKLVLTARNR---SPRTSLDISN---GISSSISAWGMVIVTAGLRGEIRAYQNFGLP 924
WPEEKL+L A+NR SPR S+D+SN S SAW MVIVT LRGEIR +QNFG P
Sbjct: 763 WPEEKLLLAAKNRARTSPRVSVDMSNIQVNTKPSASAWSMVIVTGSLRGEIRIFQNFGFP 822
Query: 925 VRI 927
VR+
Sbjct: 823 VRL 825
|
|
| TAIR|locus:2181733 AT5G02430 "AT5G02430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1246 (443.7 bits), Expect = 3.4e-143, Sum P(3) = 3.4e-143
Identities = 277/617 (44%), Positives = 373/617 (60%)
Query: 294 LIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVEE 353
LIKNLD GKEF+V E E+G W ++ ++ TG+QLT+EEFE VG+S +V++LMRR+N
Sbjct: 257 LIKNLDTGKEFIVKEYGENGMWNRLSDLQTGKQLTMEEFEKSVGYSSVVKDLMRRENANS 316
Query: 354 GNKDSFDLNNNXXXXXXXXXXXXXXXXXXIRTVASSVTGHKXXXXXXXXXXXXXKGGRRS 413
D N+ I+ VA S++ K G S
Sbjct: 317 -TMDFRKFNSYVSKSLRVSKKRGAALLKNIKDVAHSMSSSKVSEKEKDSTGS----GTSS 371
Query: 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLAS 473
+ + + + V+VR GKS KDL+AL+ CQEIQAH G IW++KFS D LAS
Sbjct: 372 PKVAEKNNE---QANQWVKVRHSGKSHKDLSALHMCQEIQAHQGGIWTMKFSPDSHLLAS 428
Query: 474 AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA-NGSPEPTSLSPKHLDNHLEKKRR 532
AGEDC IHVW+V E E + +G L + + +GS + +S + +KK++
Sbjct: 429 AGEDCAIHVWEVQECE-----IMSMNEGSLTPIHPSMSGSTDKSSEGDA-AEVSQDKKKK 482
Query: 533 GR-SINRKSLSL-DHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXXMDKTV 590
G+ S+++K + D++ PETVF+LSDKPICSF GHLDDVLD MDKTV
Sbjct: 483 GKTSMSKKGNQIPDYVHAPETVFSLSDKPICSFTGHLDDVLDLSWSRSQLLLSSSMDKTV 542
Query: 591 RLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE 650
RLW + +++CLK+F+H+DYVTC+QFNP+D+ YFISGSLDAK+RIW+I RQVV+WNDL E
Sbjct: 543 RLWDIETQSCLKLFAHNDYVTCVQFNPLDEDYFISGSLDAKIRIWNISNRQVVEWNDLKE 602
Query: 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710
MVTA CYTPDGQ A VGS G C LY+ + KL+Q + I+LQNKKK + +KIT FQF+P
Sbjct: 603 MVTAVCYTPDGQAAFVGSINGHCRLYSAEDCKLEQTNQIDLQNKKK-AQAKKITAFQFSP 661
Query: 711 GSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVW 770
+ SEVLVTSADSRIRV+DG +LV KF+GF+N NSQ++AS T + +++V ASEDS VYVW
Sbjct: 662 INPSEVLVTSADSRIRVLDGTELVQKFRGFKNMNSQMTASYTVDAKHIVCASEDSQVYVW 721
Query: 771 KYEAESRPSRS--KSITVTHSYEHFHCQDVSVAIPWPGV--GDTWGLQ-DTYLDEFSTAN 825
K+E E R + K++T+ SYE F C+DVSVA+PW GV G+ Q + + +
Sbjct: 722 KHE-EPRLGITGRKTVTMCTSYETFPCKDVSVAVPWNGVVKGEPPSTQHQSKRNPKKPST 780
Query: 826 HPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTARNRSP 885
TP +G + N+ +GT AT + D AT S
Sbjct: 781 TTTTPENTTTGKKSGLPPLPKKNN--DGTADGATEQHQEDD-PATHISHNESENNTGESI 837
Query: 886 RTSLDISNGISSSISAW 902
+ S ISS IS+W
Sbjct: 838 KHGDSPSISISSRISSW 854
|
|
| TAIR|locus:2040731 AT2G37670 "AT2G37670" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1292 (459.9 bits), Expect = 6.4e-138, Sum P(3) = 6.4e-138
Identities = 271/569 (47%), Positives = 361/569 (63%)
Query: 294 LIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVEE 353
LIKNLD GKEF+VNE EDG W ++ ++ TG+QLT+EEFE CVG+SP+V+ELMRR+NV
Sbjct: 247 LIKNLDTGKEFIVNEYDEDGMWNRLSDLQTGKQLTLEEFEKCVGYSPVVKELMRRENVNR 306
Query: 354 GNKDSF-DLNNNXXXXXXXXXXXXXXXXXXIRTVASSVTGHKXXXXXXXXXXXXXKGGRR 412
N + DL ++ ++ G G
Sbjct: 307 INYEPLMDLRKFNSYLSKSVRLSKRRGAALLK----NIKGVAHSMSLRVADKDVSDGSTD 362
Query: 413 SSSATDDSQDVSFHGQ--ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY 470
S D + HG+ E V+VR GKS K+L+AL+ CQEIQAH G++W+IKFS D Y
Sbjct: 363 SPKKGKDHK----HGKANEWVKVRPTGKSYKELSALHMCQEIQAHEGAVWTIKFSQDAHY 418
Query: 471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530
LAS G D VIHVW+V E E L +G L + P S + +EKK
Sbjct: 419 LASGGADRVIHVWEVQECE-----LMSMNEGSLTPI-----HPSLCDSSGNEI-TVVEKK 467
Query: 531 RRGR-SINRKSLSL-DHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXXMDK 588
++G+ S R+ + D++ VPETVF+ SDKP+CS +GHLD +LD MDK
Sbjct: 468 KKGKGSSGRRHNHIPDYVHVPETVFSFSDKPVCSLKGHLDAILDLSWSKSQLLLSSSMDK 527
Query: 589 TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL 648
TVRLW + +KTCLK+F+H+DYVTCIQF+PVD+ YF+SGSLDAK+RIWSI +R VV+W+DL
Sbjct: 528 TVRLWDIETKTCLKLFAHNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQDRHVVEWSDL 587
Query: 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708
HEMVTAACYTPDGQGAL+GS+KG C Y+T + KL Q + I++Q+ KK +RKIT FQF
Sbjct: 588 HEMVTAACYTPDGQGALIGSHKGICRAYDTEDCKLSQTNQIDVQSNKKSQAKRKITSFQF 647
Query: 709 APGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVY 768
+P + SEVLVTSADSRIR++DG +++HKFKGFRNT SQ+SAS + +G+Y++ ASEDS VY
Sbjct: 648 SPVNPSEVLVTSADSRIRILDGSEVIHKFKGFRNTCSQLSASYSQDGKYIICASEDSQVY 707
Query: 769 VWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGV--GDTWGLQ---DTYLDEFST 823
+WK + R++S T S+EHFHC+DVS A+PW G G+ +Q + ST
Sbjct: 708 LWKNDFH----RTRSTLTTQSHEHFHCKDVSAAVPWHGHVRGEPPPVQIHSKRHSKRIST 763
Query: 824 ANHPPTPVEEISGNEDCRSATGYTNSPLN 852
++ P + + + E SATG T S N
Sbjct: 764 SSQPSSTISSPTKEET--SATGPTTSNRN 790
|
|
| TAIR|locus:2019494 AT1G64610 "AT1G64610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 790 (283.2 bits), Expect = 3.4e-94, Sum P(4) = 3.4e-94
Identities = 161/404 (39%), Positives = 244/404 (60%)
Query: 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC 478
D + V + RV+ + K K+L+++ QE AH+GSI ++KFS DG+Y+ASAGEDC
Sbjct: 181 DCESVRTQLHQVARVQTHKKQFKELSSMCIDQEFSAHDGSILAMKFSPDGKYIASAGEDC 240
Query: 479 VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR 538
V+ VW + E ER + D + G + + + P ++N EK + S R
Sbjct: 241 VVRVWSITEEERTDTYEVAEVDSGVYF-----GMNQRSQIEPLKINN--EKTEKKSSFLR 293
Query: 539 KSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXXMDKTVRLWHLSSK 598
KS +V+P T+F++S+KP+ F+GH+ ++LD +D+TVRLW +
Sbjct: 294 KSSDSTCVVLPPTIFSISEKPLHEFKGHIGEILDLSWSEKGYLLSSSVDETVRLWRVGCD 353
Query: 599 TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYT 658
CL+ F+H+++VTC+ FNPVDD YFISGS+D KVRIW + +VVD+ D+ ++VTA CY
Sbjct: 354 ECLRTFTHNNFVTCVAFNPVDDNYFISGSIDGKVRIWDVTRCRVVDYTDIRDIVTAVCYR 413
Query: 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS--EV 716
PD +GA++GS G+C Y+ EN+LQ IN+ KKK + +R I+G Q+ P S +V
Sbjct: 414 PDAKGAVIGSMTGNCRFYHIFENQLQMDQEINVHGKKKVASKR-ISGLQYLPSDSDSDKV 472
Query: 717 LVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKY-EAE 775
+VTSADS+IR++ G D++ K K ++ SAS ++G++++S SEDSY+ VW Y +
Sbjct: 473 MVTSADSQIRIICGEDVICKLKA--SSLRTTSASFISDGKHIISTSEDSYINVWSYSQLP 530
Query: 776 SRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLD 819
S+ S++ SYE F + SVAIPW G GL + D
Sbjct: 531 SKKPYSETPKSIRSYEGFLSHNASVAIPWLRQGRRDGLSECITD 574
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| TAIR|locus:2165700 AT5G42010 "AT5G42010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
Identities = 199/522 (38%), Positives = 300/522 (57%)
Query: 412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL 471
++ TD S ++ RV+ + K K+L++L QE AH+GSI +KFS DG+YL
Sbjct: 213 KTEECTDGESTRSSIRRQLTRVQSFKKQFKELSSLCVGQEFSAHDGSIVVMKFSHDGKYL 272
Query: 472 ASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531
ASAGEDCV+ VW ++E ER+ E E + G + + + P +N EK
Sbjct: 273 ASAGEDCVVRVWNIIEDERRDNEFEVAESDSSCVYF---GMNDKSQIEPLKTEN--EKIE 327
Query: 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXXMDKTVR 591
+ R + RK V+P VF++S+ P F+GH ++LD +D+TVR
Sbjct: 328 KSRGLLRKKSESTCAVLPSKVFSISETPQHEFRGHTGEILDLSWSEKGFLLSSSVDETVR 387
Query: 592 LWHL-SSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE 650
LW + SS C+++FSH +VTC+ FNPVDD YFISGS+D KVRIW + + +VVD+ D+ +
Sbjct: 388 LWRVGSSDECIRVFSHKSFVTCVAFNPVDDNYFISGSIDGKVRIWDVSQFRVVDYTDIRQ 447
Query: 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710
+VTA CY PDG+GA+VGS G C Y+T++N+LQ I+L KKK ++R ITGFQF P
Sbjct: 448 IVTALCYRPDGKGAVVGSMTGECRFYHTTDNQLQLDRDISLHGKKKVPNKR-ITGFQFFP 506
Query: 711 GSSSEVLVTSADSRIRVVDGIDLVHKFK---GFRNT-NSQISASLTANGRYVVSASEDSY 766
G S +V+VTSADS+IR++ G+D + K K R T S AS T++G+++VS E+S
Sbjct: 507 GDSDKVMVTSADSQIRIICGVDTICKLKKASSLRTTLMSPTFASFTSDGKHIVSTIEESG 566
Query: 767 VYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTA-N 825
++VW + ++ + S+ SYE F ++VSVAIPW G G +D+ + + +
Sbjct: 567 IHVWDFSQPNKKASSQKPKTIRSYEGFLSRNVSVAIPWLGQGK----EDSIIADLEKSFA 622
Query: 826 HPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTARNRSP 885
H P P++ S + AT + L G ++ + +SAT +++R++
Sbjct: 623 HFPVPLDYFS---PMKGATTWPEEKL-GVVAGTAAA----AVSAT-------VSSRSKLR 667
Query: 886 RTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNFGLPVRI 927
N S+ WG+VIVTA G IR + N+GLP+R+
Sbjct: 668 LLKSVCQNVHGSTPHLWGLVIVTATWDGSIRVFHNYGLPIRV 709
|
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| TAIR|locus:2169769 AT5G24320 "AT5G24320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 817 (292.7 bits), Expect = 2.8e-84, Sum P(2) = 2.8e-84
Identities = 181/410 (44%), Positives = 248/410 (60%)
Query: 411 RRSSSATDDSQDVSFHGQ--ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG 468
+RS+ D+ +V+ G ERV+V++Y K K+L+AL+K QEIQAH G+I ++KFS DG
Sbjct: 204 KRSAGGDDNGGEVAVCGSRIERVKVKEYKKEAKELSALFKGQEIQAHEGAILAMKFSPDG 263
Query: 469 RYLASAGEDCVIHVWQVVESERKGEL-LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527
RYLASAGED V+ VW VVE ER E + K + + + P ++ + L
Sbjct: 264 RYLASAGEDGVLRVWSVVEDERCEEHDVPKIDPSCIYFEVSKLSELRPVAVEKDGITGSL 323
Query: 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXXMD 587
R K+ +++P +F + DKP+ F GH D+LD +D
Sbjct: 324 MSPR-------KTTESACVIIPPKIFRVLDKPLHEFLGHSGDILDISWSKNNRLLSASVD 376
Query: 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND 647
+VRLW + + CL IFSH++YVT +QFNPVDD +FISGS+D KVRIWS + QVVDW D
Sbjct: 377 NSVRLWQIGCEDCLGIFSHNNYVTSVQFNPVDDDHFISGSIDGKVRIWSASQCQVVDWAD 436
Query: 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707
+VTA CY PDGQ ++G+ C YN S + LQ I L NKKK S++R I GFQ
Sbjct: 437 ARGIVTAVCYQPDGQAVIIGTLTSDCRFYNVSGHCLQLDGHICLHNKKKSSNKR-IIGFQ 495
Query: 708 FA----PGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASE 763
F S V+V SADS++R++ G ++VHK+KG RN +QISAS TA+G+++VSA +
Sbjct: 496 FLLQFDSTDPSRVMVASADSQVRIISGRNVVHKYKGSRNAGNQISASFTADGKHIVSACD 555
Query: 764 DSYVYVWK---YEAE-SRP---SRSKSITVTHSYEHFHCQDVSVAIPWPG 806
DS VYVW ++ E S P S +K + + S+E F DVSVAIPW G
Sbjct: 556 DSSVYVWNCVGHDPEQSSPGFFSHTKRLKI-RSFEKFSA-DVSVAIPWCG 603
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| TAIR|locus:2168606 AT5G53500 "AT5G53500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 802 (287.4 bits), Expect = 3.5e-84, Sum P(2) = 3.5e-84
Identities = 192/467 (41%), Positives = 276/467 (59%)
Query: 409 GGR-RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD 467
GGR R+SS D +S RV+V+ K K+L+ALY+ Q+I+AH+G+I ++KFS D
Sbjct: 180 GGRMRASSGYGDV--IS-----RVKVKHCKKQAKELSALYQSQDIKAHDGAILAMKFSND 232
Query: 468 GRYLASAGEDCVIHVWQVVESERKGELLEK--QEDGHLNMLLLANGSPEPTSLSPKHLDN 525
G++LAS+GED ++ VW+VVE ++K L E M N + + L P L N
Sbjct: 233 GKFLASSGEDGIVRVWKVVE-DKKSRLRRDCLNEIDPSCMYFEVN---DLSQLKPV-LVN 287
Query: 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXX 585
+ K+ S RK+ +V P VF + +KP+ F+GH +VLD
Sbjct: 288 EEKPKKTTESF-RKTSDSACVVFPPKVFRIMEKPLYEFRGHTGEVLDISWSKDNYLLSAS 346
Query: 586 MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
MDKTVRLW + S CL +F+H+ YVT +QFNPV++ YF+SGS+D KVRIW+I VVDW
Sbjct: 347 MDKTVRLWKVGSNDCLGVFAHNSYVTSVQFNPVNENYFMSGSIDGKVRIWNISGCSVVDW 406
Query: 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG 705
DL ++++A CY PDGQG ++GS GSC +N S L+ S I+L NKKK S++R ITG
Sbjct: 407 ADLKDIISAVCYRPDGQGGIIGSLNGSCRFFNMSGEFLELDSQIHLHNKKKSSNKR-ITG 465
Query: 706 FQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS 765
FQF P ++VLV SADS++R++ G ++V K+KG T S SASLT++G+++VSA EDS
Sbjct: 466 FQFLPQEPTKVLVVSADSKVRILQGNNVVRKYKGVCKTRSLTSASLTSDGKHIVSACEDS 525
Query: 766 YVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTAN 825
VY+W + ES +K I S+E F + SVA W G D +T L FS+ +
Sbjct: 526 NVYIWSNDEESE---TKKI---RSFERFSA-NASVAATWCGFSD----HNTTLP-FSSPS 573
Query: 826 HPPTPVEEISGNEDCRSATG-YTNSPLNGTISSATNSYFFDRISATW 871
+ G+ SAT N P N +SA N+ + + +++
Sbjct: 574 CLSHNEGFVPGSISKGSATWPEENLPANPLSTSAMNASHYKFLKSSY 620
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| TAIR|locus:2028539 AT1G48870 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 483 (175.1 bits), Expect = 4.5e-64, Sum P(3) = 4.5e-64
Identities = 98/275 (35%), Positives = 151/275 (54%)
Query: 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXXMDKTV 590
R+ IN+++ +L ++ P+ F + + P GH DVLD DKTV
Sbjct: 239 RQQEPINQQA-AL--VLFPQKAFHIEETPFQELYGHTGDVLDLAWSDSNLLLSASKDKTV 295
Query: 591 RLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE 650
RLW CL +F H++YVTC++FNPV+ F SGS+D K RIW + E +VV W D+ +
Sbjct: 296 RLWRTGCDQCLHVFHHNNYVTCVEFNPVNKNNFASGSIDGKARIWGLSEERVVAWTDVRD 355
Query: 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710
++A Y P+G G +VG G+C Y +N + I ++ + + IT +F P
Sbjct: 356 SISAISYQPNGNGFVVGCITGNCRFYQILDNDVIMDEQILIRGRNR------ITAVEFCP 409
Query: 711 GSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISAS-LTANGRYVVSASEDSYVYV 769
GSS ++LV+S DS++R+ D ++HKFK N Q SAS +++ G++++S VY+
Sbjct: 410 GSSEKILVSSEDSKVRIFDKTQMIHKFKAPSNFGRQSSASFVSSTGKHILSVRRGVGVYL 469
Query: 770 WKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPW 804
W +A PSR K + S+E+FH VS W
Sbjct: 470 WNNDAF--PSR-KGAKSSRSFEYFHSPGVSAVAAW 501
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| UNIPROTKB|Q9XSC3 WDR44 "WD repeat-containing protein 44" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 543 (196.2 bits), Expect = 1.2e-51, Sum P(2) = 1.2e-51
Identities = 130/364 (35%), Positives = 201/364 (55%)
Query: 415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA-HNGSIWSIKFSLDGRYLAS 473
S++DD + + + + + K D + Q++ H G++W++KFS GR LAS
Sbjct: 469 SSSDD-EGMPYTRPVKFKAAHGFKGPYDFDQIKVVQDLSGEHMGAVWTMKFSHCGRLLAS 527
Query: 474 AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533
AG+D V+ +W L+ D NM + N +SP L +
Sbjct: 528 AGQDNVVRIWA----------LKNAFDYFNNMRMKYNTEGR---VSPSPSQESLNSSKSD 574
Query: 534 RSINRKSLSLDHMVVPETVFA-LSDKPICSFQGHLDDVLDXXXXXXXXXXXXXMDKTVRL 592
S D P+ A +P C ++GH D+LD MDKTVRL
Sbjct: 575 TDTGVCS-GTDED--PDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRL 631
Query: 593 WHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH--- 649
WH+S + CL F H D+VT I F+P DDRYF+SGSLD K+R+W+IP+++V WN++
Sbjct: 632 WHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQT 691
Query: 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQ-RKITGFQF 708
+++TAA + +G+ A++G+Y G C Y+T L+ + I++++ + R+ RKITG +
Sbjct: 692 KLITAANFCQNGKYAVIGTYDGRCIFYDTEH--LKYHTQIHVRSTRGRNKVGRKITGIEP 749
Query: 709 APGSSSEVLVTSADSRIRVVD--GIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSY 766
PG + ++LVTS DSRIR+ D + L K+KG+ N++SQI AS + + Y+VS SED Y
Sbjct: 750 LPGEN-KILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFNYLVSGSEDKY 808
Query: 767 VYVW 770
VY+W
Sbjct: 809 VYIW 812
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_XI001002 | hypothetical protein (882 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 927 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-32 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-25 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-21 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-13 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-13 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 8e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-05 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 3e-32
Identities = 79/334 (23%), Positives = 136/334 (40%), Gaps = 59/334 (17%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509
+ ++ H G + + FS DG+ LA+ D I VW + GELL +
Sbjct: 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDL----ETGELLRTLK---------- 48
Query: 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSL----SLDHMVVPETVFALSD-KPICSFQ 564
H R + + S D + ++ L + + +
Sbjct: 49 ---------------GHTGPVRDVAASADGTYLASGSSDKTI---RLWDLETGECVRTLT 90
Query: 565 GHLDDVLDLSWSKSQHLLSSSM-DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRY 622
GH V +++S +LSSS DKT+++W + + CL H+D+V + F+P D +
Sbjct: 91 GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTF 149
Query: 623 FISGSLDAKVRIWSIPERQVVDWNDLHEM-VTAACYTPDGQGALVGSYKGSCHLYNTSEN 681
S S D +++W + + V H V + ++PDG+ L S G+ L++ S
Sbjct: 150 VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209
Query: 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA--DSRIRV--VDGIDLVHKF 737
K L R H+ + F+P L+ S D IRV + + V
Sbjct: 210 KCLG----TL-----RGHENGVNSVAFSPDGY---LLASGSEDGTIRVWDLRTGECVQTL 257
Query: 738 KGFRNTNSQISASLTANGRYVVSASEDSYVYVWK 771
G +TNS S + + +G+ + S S D + +W
Sbjct: 258 SG--HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 5e-25
Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 18/226 (7%)
Query: 556 SDKPICSFQGHLDDVLDLSWSKSQH-LLSSSMDKTVRLWHLSSKTCLKIF-SHSDYVTCI 613
+ + + + +GH V D++ S L S S DKT+RLW L + C++ H+ YV+ +
Sbjct: 40 TGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV 99
Query: 614 QFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM-VTAACYTPDGQGALVGSYKGS 672
F+P D R S S D +++W + + + H V + ++PDG S G+
Sbjct: 100 AFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158
Query: 673 CHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--G 730
L++ K H ++ F+P ++L +S+D I++ D
Sbjct: 159 IKLWDLRTGKCVATLT---------GHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLST 208
Query: 731 IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776
+ +G N S + + +G + S SED + VW
Sbjct: 209 GKCLGTLRGH--ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 99.4 bits (246), Expect = 8e-22
Identities = 89/384 (23%), Positives = 142/384 (36%), Gaps = 40/384 (10%)
Query: 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML 506
++ H SI SI FS DG L S D I +W + E+ + LE D ++ L
Sbjct: 56 LSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKL 115
Query: 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS---------- 556
L++ L+ LD ++ H E+V +L+
Sbjct: 116 ALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGH---SESVTSLAFSPDGKLLAS 172
Query: 557 ---------------DKPICSFQGHLDDVLDLSWS--KSQHLLSSSMDKTVRLWHLSSKT 599
KP+ + GH D V L++S + S S D T+RLW LS+
Sbjct: 173 GSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK 232
Query: 600 CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP-ERQVVDWNDLH-EMVTAACY 657
L+ + + D SGS D +R+W + ++ H V + +
Sbjct: 233 LLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292
Query: 658 TPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717
+PDG+ GS G+ L++ KL + H+ ++ F+P S V
Sbjct: 293 SPDGKLLASGSSDGTVRLWDLETGKLLSS-------LTLKGHEGPVSSLSFSPDGSLLVS 345
Query: 718 VTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777
S D IR+ D + K ++ +S S + +GR V S S D V +W S
Sbjct: 346 GGSDDGTIRLWD-LRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL 404
Query: 778 PSRSKSITVTHSYEHFHCQDVSVA 801
T + F S+A
Sbjct: 405 LRNLDGHTSRVTSLDFSPDGKSLA 428
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 3e-21
Identities = 64/231 (27%), Positives = 101/231 (43%), Gaps = 33/231 (14%)
Query: 442 DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501
DL + + H + S+ FS DGR L+S+ D I VW V + L G
Sbjct: 79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL-----RG 133
Query: 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPI 560
H + + SP+ T ++ S S D + ++ L + K +
Sbjct: 134 HTDWVNSVAFSPDGTFVA--------------------SSSQDGTI---KLWDLRTGKCV 170
Query: 561 CSFQGHLDDVLDLSWS-KSQHLLSSSMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPV 618
+ GH +V +++S + LLSSS D T++LW LS+ CL H + V + F+P
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP- 229
Query: 619 DDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM-VTAACYTPDGQGALVGS 668
D SGS D +R+W + + V H VT+ ++PDG+ GS
Sbjct: 230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 6e-18
Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 40/207 (19%)
Query: 438 KSCK--DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495
K+ K D+ ++ H + S+ FS DG ++AS+ +D I +W + + L
Sbjct: 115 KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL- 173
Query: 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSL---SLDHMVVPETV 552
GH G + SP + + L S D + +
Sbjct: 174 ----TGH-------TGEVNSVAFSP----------------DGEKLLSSSSDGTI---KL 203
Query: 553 FALSD-KPICSFQGHLDDVLDLSWSKSQHLL-SSSMDKTVRLWHLSSKTCLKIFS-HSDY 609
+ LS K + + +GH + V +++S +LL S S D T+R+W L + C++ S H++
Sbjct: 204 WDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNS 263
Query: 610 VTCIQFNPVDDRYFISGSLDAKVRIWS 636
VT + ++P D + SGS D +RIW
Sbjct: 264 VTSLAWSP-DGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.4 bits (181), Expect = 1e-13
Identities = 74/343 (21%), Positives = 130/343 (37%), Gaps = 45/343 (13%)
Query: 417 TDDSQDVSFHGQERVRVRQYGKSCK----DLTALYKCQEIQAHNGSIWSIKFSLDGR-YL 471
++ ++F ++ DL + H + S+ FS DG +
Sbjct: 155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214
Query: 472 ASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531
AS D I +W G+LL GH + ++ + SP+ + L+ D +
Sbjct: 215 ASGSSDGTIRLW----DLSTGKLLRSTLSGHSDSVVSSF-SPDGSLLASGSSDGTI---- 265
Query: 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-SQHLLSSSMDKTV 590
R + +S S + + GH VL +++S + L S S D TV
Sbjct: 266 --RLWDLRSSS---------------SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308
Query: 591 RLWHLSSKTC---LKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND 647
RLW L + L + H V+ + F+P GS D +R+W + + + +
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368
Query: 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707
H V + ++PDG+ GS G+ L++ S L + H ++T
Sbjct: 369 GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL---------LRNLDGHTSRVTSLD 419
Query: 708 FAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISAS 750
F+P S + S+D+ IR+ D + + S S
Sbjct: 420 FSPDGKS-LASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKS 461
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.8 bits (177), Expect = 3e-13
Identities = 76/332 (22%), Positives = 129/332 (38%), Gaps = 50/332 (15%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508
+ ++ H+ S+ S+ FS DG+ LAS D I +W + + + L
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK--------------PLSTL 194
Query: 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS--FQGH 566
A + +SL+ L S S D + ++ LS + GH
Sbjct: 195 AGHTDPVSSLAFSPDGGLL----------IASGSSDGTI---RLWDLSTGKLLRSTLSGH 241
Query: 567 LDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCL--KIFSHSDYVTCIQFNPVDDRYFI 624
D V+ L S S D T+RLW L S + L + HS V + F+P D +
Sbjct: 242 SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLA 300
Query: 625 SGSLDAKVRIWSIPERQVVDWNDLH---EMVTAACYTPDGQGALVG-SYKGSCHLYNTSE 680
SGS D VR+W + +++ L V++ ++PDG + G S G+ L++
Sbjct: 301 SGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360
Query: 681 NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGF 740
K K + F+P V S D +R+ D + +
Sbjct: 361 GK----------PLKTLEGHSNVLSVSFSPDGRV-VSSGSTDGTVRLWD-LSTGSLLRNL 408
Query: 741 RNTNSQI-SASLTANGRYVVSASEDSYVYVWK 771
S++ S + +G+ + S S D+ + +W
Sbjct: 409 DGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-06
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVW 483
+ ++ H G + S+ FS DG+YLAS +D I +W
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-06
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVW 483
+ ++ H G + S+ FS DG LAS +D + VW
Sbjct: 5 RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-06
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH 594
K + + +GH V +++S L S S D TVR+W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 597 SKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWS 636
S LK H+ VT + F+P D +Y SGS D +++W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 556 SDKPICSFQGHLDDVLDLSWSK-SQHLLSSSMDKTVRLWH 594
S + + + +GH V +++S ++L S S D T++LW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-05
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 598 KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWS 636
L+ H+ VT + F+P D SGS D VR+W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.4 bits (111), Expect = 3e-05
Identities = 45/212 (21%), Positives = 78/212 (36%), Gaps = 21/212 (9%)
Query: 570 VLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD 629
+ S LL+ D V L LSS + H D +T I F+P D +SGS D
Sbjct: 31 LSLGSSESGILLLALLSDSLVSLPDLSSLL---LRGHEDSITSIAFSP-DGELLLSGSSD 86
Query: 630 AKVRIWSIPERQ----VVDWNDLHEMVTAACYTPDGQGALV--GSYKGSCHLYNTSENKL 683
+++W + + ++ + A +PDG L+ S G+ L++ S
Sbjct: 87 GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP-- 144
Query: 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV--VDGIDLVHKFKGFR 741
+ H +T F+P +S D I++ + + G
Sbjct: 145 ------GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT 198
Query: 742 NTNSQISASLTANGRYVVSASEDSYVYVWKYE 773
+ S ++ S G + S S D + +W
Sbjct: 199 DPVSSLAFS-PDGGLLIASGSSDGTIRLWDLS 229
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 927 | |||
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.98 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.97 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.96 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.96 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.96 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.95 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.95 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.95 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.94 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.94 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.94 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.94 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.93 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.93 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.93 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.93 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.92 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.92 | |
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.92 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.92 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.92 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.91 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.91 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.91 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.91 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.91 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.91 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| PTZ00420 | 568 | coronin; Provisional | 99.9 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.9 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.9 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.9 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.9 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.89 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.89 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.89 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.89 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.89 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.88 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.88 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.88 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.88 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.87 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.87 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.87 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.87 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.87 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.87 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.87 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.87 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.86 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.86 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.86 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.86 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.85 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.85 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.84 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.84 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.82 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.82 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.82 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.81 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.81 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.81 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.8 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.8 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.8 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.8 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.8 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.79 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.78 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.77 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.76 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.75 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.75 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.75 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.74 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.74 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.74 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.73 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.73 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.72 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.72 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.71 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.71 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.7 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.69 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.69 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.67 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.66 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.66 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.66 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.63 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.62 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.62 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.62 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.62 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.62 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.58 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.58 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.57 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.56 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.56 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.53 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.52 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.52 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.51 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.5 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.5 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.5 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.5 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.45 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.45 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.44 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.44 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.43 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.43 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.42 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.42 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.4 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.4 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.39 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.36 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.36 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.35 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.34 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.34 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.33 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.33 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.33 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.32 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.32 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.31 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.31 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.3 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.29 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.29 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.25 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.24 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.23 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.22 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.19 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.18 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.17 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.17 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.16 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.15 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.14 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.14 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.13 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.12 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.1 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.09 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.08 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.08 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.08 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.07 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.06 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.05 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.05 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.03 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.02 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.99 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.97 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.97 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.97 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.95 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.93 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.83 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.83 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.83 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.83 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.79 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.79 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.78 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.78 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.77 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.77 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.76 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.74 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.73 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.73 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.73 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.67 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.66 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.65 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.58 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.57 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.57 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.56 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.56 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.54 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.48 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.47 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.46 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.43 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.42 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.42 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.41 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.41 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.36 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.36 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.35 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.29 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.24 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.21 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.2 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.2 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.2 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.19 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.16 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.15 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.08 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.07 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.07 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.06 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.02 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.01 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.01 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.01 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.98 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.92 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.89 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.88 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.8 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.8 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.76 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.75 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.74 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.72 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.71 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.68 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.6 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.55 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.53 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.53 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.53 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.5 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.47 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.44 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.43 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.36 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.36 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.31 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.3 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.29 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.27 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.27 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.26 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.22 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.21 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.08 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.04 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.02 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.02 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.99 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.98 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.97 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.91 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.9 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.82 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 96.81 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.81 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.78 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.66 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.61 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.61 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.46 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 96.44 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.42 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.37 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.34 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.31 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.3 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.17 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.12 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.09 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.0 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.85 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.81 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 95.66 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.35 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.34 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.11 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.03 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.01 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 94.99 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 94.97 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 94.96 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.77 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 94.66 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.65 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 94.57 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.52 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 94.5 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.45 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.29 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 94.23 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 93.91 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 93.78 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 93.47 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.46 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 93.38 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 93.19 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.16 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 93.07 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 92.77 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 92.64 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 92.54 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 92.25 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.9 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 91.67 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 90.8 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 90.71 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 90.71 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 90.52 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 90.5 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 90.05 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 89.7 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 89.59 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 89.56 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 89.44 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 89.25 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 89.08 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 89.05 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 88.13 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 88.08 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 87.74 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 87.41 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 87.38 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 87.2 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 86.81 | |
| PRK10115 | 686 | protease 2; Provisional | 86.45 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 86.2 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 85.77 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 85.22 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 84.93 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 84.51 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 84.34 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 84.24 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 84.21 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 84.19 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 83.73 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 82.56 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 82.17 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 81.75 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 81.59 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 81.17 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 81.0 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 80.95 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 80.64 | |
| PLN02153 | 341 | epithiospecifier protein | 80.21 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 80.14 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 80.08 |
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-74 Score=661.45 Aligned_cols=594 Identities=49% Similarity=0.790 Sum_probs=456.8
Q ss_pred cCCCceEEEcccccCCccceeeeecCCccccHHHHHHhhCCCHHHHHHHHhhccc-cCCCCccccCCCCCCC-CCCcccc
Q 002407 298 LDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVE-EGNKDSFDLNNNGSSG-GGMKSKK 375 (927)
Q Consensus 298 ~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~g~s~~~~~l~~r~~~~-~~~~~~~~~~~~~~~~-~~~~~kk 375 (927)
+|.|+||+|++...+|+|+++.+++++.++++||||...|.++.+++||++++.+ +... ...+.+-... ...+.||
T Consensus 106 ~~~~~e~~v~e~~~~~~~~~~sd~~~~~~~~~e~~e~~~g~~~~v~~l~~~~~~~~~~~~--~~~~~~~s~s~~~~~~~r 183 (712)
T KOG0283|consen 106 LDTGDEFSVSENPEDGSVNRLSDVGTGASSTLEELESSPGESSRVKELGDRENADLDEML--TKYNDDVSGSVLLRKSKR 183 (712)
T ss_pred ecccceeeEeeccCccccccccCCCcccccccccccCCcCcccchhhhhhhcccccchhh--cccccccccccccchhhh
Confidence 6999999999999999999999999999999999999999999999999999886 2111 1111111111 2233333
Q ss_pred c-Ccccccccceeeeeccc-cCCCCCCcccCccccCCceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEee
Q 002407 376 K-GSWFKSIRTVASSVTGH-KERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ 453 (927)
Q Consensus 376 k-~~Wl~~~~~~~~~~~g~-k~~~~~~~~~~~~~~~g~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~ 453 (927)
. ..|+++++.+++.+.+. +.++...+.+...+..+...-....+....-+......+++.+.+..+++..++..|+++
T Consensus 184 ~~~~~l~~~k~~~~~~s~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe~~ 263 (712)
T KOG0283|consen 184 YGKRWLKSLKVVAHSLSSLSENRRSRFDSDSSSQFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQEIS 263 (712)
T ss_pred hhhhhhhhccccccccccccccccccccccchhcccccccccccccccccccCCcceEEecccCCCcccceeeEEeeccc
Confidence 3 45999999999999765 444445555555555666655666666665566678999999999999999999999999
Q ss_pred -cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 454 -AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 454 -gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
+|.++||+|+||+||+||||||+||.|+||.+.+.+....- ..........+.......-+... . .....
T Consensus 264 ~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~----~~~~~~~~~~~~~~s~~~p~~s~--~---~~~~~ 334 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVA----EGDSSCMYFEYNANSQIEPSTSS--E---EKISS 334 (712)
T ss_pred cccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhccc----ccccchhhhhhhhccccCccccc--c---ccccc
Confidence 99999999999999999999999999999999876542211 00111111111111110000000 0 00111
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEE
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTC 612 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~ 612 (927)
......+.........+..++.+..+|++.|.||.+.|.+|.|+.+++|+++++|+|||||++...+|+++|.|.+.|+|
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTc 414 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTC 414 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEE
Confidence 11223334444457778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccc
Q 002407 613 IQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ 692 (927)
Q Consensus 613 v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~ 692 (927)
|+|+|.|++||++|+.|++|+||++...+++.|.+.++.|+++||.|||++.++|+.+|.|++|++...++.....+...
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred cccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC--CcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEE
Q 002407 693 NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVW 770 (927)
Q Consensus 693 ~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~--~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IW 770 (927)
..++..+. .||+++|.|.....+++++.|..|||||+ ..++++|+++.+....+.+.|+.||++|+++++|..||||
T Consensus 495 ~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 495 NKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred cCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 77766666 99999999988778999999999999998 7899999999999999999999999999999999999999
Q ss_pred ECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecC
Q 002407 771 KYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSP 850 (927)
Q Consensus 771 dl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSP 850 (927)
++.........+.......++.|++.++.+++.|.|...--. ....++++... ..|
T Consensus 574 ~~~~~~~~~~~~~~~~~~s~e~f~s~~vs~a~~w~g~~~~n~----------ss~~p~~~~~~--------------~~~ 629 (712)
T KOG0283|consen 574 KNDSFNSEASHKKTKSIRSYEHFSSVDVSVAIPWPGFHAHNP----------SSNLPPLIKAA--------------LRP 629 (712)
T ss_pred eCCCCccccccccccccccccccccccccccccccccccccc----------cccCCCCcccc--------------cCc
Confidence 998765444444556678899999999999999998752211 01111111110 123
Q ss_pred CCCeEEEeccccccCccccccCchhhccccc-cCCCcee--ccc--CCCC-CcccCCCCCEEEEEcCCCcEEEeecCCCc
Q 002407 851 LNGTISSATNSYFFDRISATWPEEKLVLTAR-NRSPRTS--LDI--SNGI-SSSISAWGMVIVTAGLRGEIRAYQNFGLP 924 (927)
Q Consensus 851 dg~~Lasas~~~~~d~~v~~W~~e~l~~~~~-~~s~v~s--~~~--~~~~-~~a~S~dG~vLvTgs~DG~IrvW~~~glP 924 (927)
...+..+....+...+...+|+++++....+ ....... ... ++.. ..+..+||++|+||+++|.||+|+|||||
T Consensus 630 ~~~~~~s~~~~~~~~~~s~t~~e~~~~~s~~~~~~~~~~~~~~~S~~~~~~~~~~~~wg~vivTs~~~g~Ir~~~n~glp 709 (712)
T KOG0283|consen 630 VNEFKLSSPMRSLNSRGSATWPEEKLLDSPGASASSRSSIKFLMSGCQRSSSSSPHAWGMVIVTSTLDGQIRCFQNYGLP 709 (712)
T ss_pred ccccccCCccccccccccccCcccccccccCcccccccccccccCCCccccccccCCCcceeeeccccceEEEEEecCCC
Confidence 3333333333344557789999998754332 1111111 111 1111 22356899999999999999999999999
Q ss_pred ccC
Q 002407 925 VRI 927 (927)
Q Consensus 925 ~~~ 927 (927)
.++
T Consensus 710 ~~~ 712 (712)
T KOG0283|consen 710 RRV 712 (712)
T ss_pred CCC
Confidence 875
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=331.35 Aligned_cols=293 Identities=23% Similarity=0.388 Sum_probs=248.6
Q ss_pred eeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCC
Q 002407 446 LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (927)
Q Consensus 446 l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~ 525 (927)
..+...+.||.++|.|++|+|+|++||||+.|.++|+||+.+.....+. .+|.+.|.+++|+||+..|+++..++
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-----KgH~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-----KGHKNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-----cCCccEEEEEEECCCcchhhccccCC
Confidence 3456778999999999999999999999999999999999988776664 78999999999999999999999999
Q ss_pred ceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC------cEEEEEeCCCcEEEEeCCCCc
Q 002407 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS------QHLLSSSMDKTVRLWHLSSKT 599 (927)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd------~~L~Sgs~DgtV~lWDl~t~~ 599 (927)
.|..+... ..+.....|.+|...|++|+|.|- .+|++++.||+|+|||+..++
T Consensus 180 ~I~lwdpk---------------------tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~ 238 (480)
T KOG0271|consen 180 SIRLWDPK---------------------TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT 238 (480)
T ss_pred eEEEecCC---------------------CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce
Confidence 88443311 123455678999999999999872 679999999999999999999
Q ss_pred EEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEEC-----------CCC-----
Q 002407 600 CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYT-----------PDG----- 661 (927)
Q Consensus 600 ~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~s-----------pdg----- 661 (927)
++..+. |+.+|+|+.|- ...+|++|+.|++|++|+...|.+...+ .|...|+.++++ |.+
T Consensus 239 ~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 239 CVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred EEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 998887 99999999997 4679999999999999999998877644 455688888876 223
Q ss_pred --------------------CEEEEEECCCeEEEEECCCCe-eeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 662 --------------------QGALVGSYKGSCHLYNTSENK-LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 662 --------------------~~l~tgs~Dg~I~IwDl~~~~-~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
..+++|+.|.++.+|+....+ .+.. ..+|..-|+.+.|+|++. +|++++
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r---------mtgHq~lVn~V~fSPd~r-~IASaS 386 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR---------MTGHQALVNHVSFSPDGR-YIASAS 386 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhh---------hhchhhheeeEEECCCcc-EEEEee
Confidence 349999999999999976544 2222 258999999999999987 899999
Q ss_pred CCCcEEEEECCc--ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 721 ADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 721 ~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
.|..|++||..+ .+..|.+ |-..|..++|+.|.++|++|+.|.+++||++++.+..
T Consensus 387 FDkSVkLW~g~tGk~lasfRG--Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 387 FDKSVKLWDGRTGKFLASFRG--HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred cccceeeeeCCCcchhhhhhh--ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec
Confidence 999999999655 4455555 4677999999999999999999999999999886543
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=324.40 Aligned_cols=308 Identities=18% Similarity=0.322 Sum_probs=269.6
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..+++|+.+.++|+|+..+.. +..+.++|...|.||+|+|||+.||+|+.||+|++||..+++.+... ..+
T Consensus 128 ~~l~tGsGD~TvR~WD~~TeT-----p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~----l~g 198 (480)
T KOG0271|consen 128 SRLVTGSGDTTVRLWDLDTET-----PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRA----LRG 198 (480)
T ss_pred ceEEecCCCceEEeeccCCCC-----cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccc----ccC
Confidence 457999999999999977654 34567999999999999999999999999999999999999877665 478
Q ss_pred ccccEEEEccCC-----CCCeecccccCCceeeecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEe
Q 002407 502 HLNMLLLANGSP-----EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSW 575 (927)
Q Consensus 502 ~~~~v~~v~~sp-----d~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~ 575 (927)
|...|.+++|.| ...++++++.++.+ .+|+.. +..+..+.||+.+|+|+.|
T Consensus 199 H~K~It~Lawep~hl~p~~r~las~skDg~v-----------------------rIWd~~~~~~~~~lsgHT~~VTCvrw 255 (480)
T KOG0271|consen 199 HKKWITALAWEPLHLVPPCRRLASSSKDGSV-----------------------RIWDTKLGTCVRTLSGHTASVTCVRW 255 (480)
T ss_pred cccceeEEeecccccCCCccceecccCCCCE-----------------------EEEEccCceEEEEeccCccceEEEEE
Confidence 889999998876 46688888888877 455553 4678899999999999999
Q ss_pred cCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEc-----------c------------------------CC
Q 002407 576 SKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFN-----------P------------------------VD 619 (927)
Q Consensus 576 spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fs-----------p------------------------~d 619 (927)
--+++|++++.|++|++|+...|.+.+++. |...|+.|+.+ | ..
T Consensus 256 GG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 256 GGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred cCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 989999999999999999999999999887 99999998876 2 01
Q ss_pred CCEEEEEECCCcEEEEeCCCC-cEE-EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccccc
Q 002407 620 DRYFISGSLDAKVRIWSIPER-QVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKR 697 (927)
Q Consensus 620 g~~L~sgs~Dg~I~IWDl~t~-~~v-~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~ 697 (927)
+..|++|+.|.++.+|+-... +++ ....|..-|+.+.|+||++++++++-|..|++||.++|+.+..+ +
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf---------R 406 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF---------R 406 (480)
T ss_pred cceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh---------h
Confidence 235999999999999986543 333 57788899999999999999999999999999999999988775 5
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEE
Q 002407 698 SHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 698 ~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWd 771 (927)
+|-..|+.++|+.|.. +|++++.|.+++||+.++....+....|...|.++.|+|||..+++|+.|..+++|.
T Consensus 407 GHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 407 GHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred hccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 8999999999999876 899999999999999887777777777788899999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=298.69 Aligned_cols=293 Identities=19% Similarity=0.287 Sum_probs=253.6
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
++|+||.+.|.+|.|++|.++|++++.||.+.|||.-+..+...+ .-....|..++++|.+.+++.++.++....
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-----pl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-----PLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-----ecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 678999999999999999999999999999999999887766554 345678999999999999999999887633
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCC
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSD 608 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~ 608 (927)
......-. .-..+..+.+.+|++-+.|+.|.+|+.|+|++.|.++.+||+++++.+..|. |..
T Consensus 124 y~ls~~d~----------------~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~g 187 (343)
T KOG0286|consen 124 YPLSTRDA----------------EGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTG 187 (343)
T ss_pred Eecccccc----------------cccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcc
Confidence 22110000 0011345678999999999999999999999999999999999999999998 999
Q ss_pred ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 609 ~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
.|.++.+.|.+++.|++|+.|+..+|||++.+.+++. ..|+..|++++|.|+|.-|++|+.|+++++||++..+.+..+
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY 267 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee
Confidence 9999999998999999999999999999999998875 456679999999999999999999999999999998877776
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
.- ......|++++|+..|+ +|++|..|..+.+||.-+....-....|...|.++..+|||..|++|+.|..+
T Consensus 268 s~-------~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 268 SH-------DSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTL 339 (343)
T ss_pred cc-------CcccCCceeEEEccccc-EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhe
Confidence 52 35567899999999987 89999999999999976665555555678889999999999999999999999
Q ss_pred EEEE
Q 002407 768 YVWK 771 (927)
Q Consensus 768 ~IWd 771 (927)
+||.
T Consensus 340 riW~ 343 (343)
T KOG0286|consen 340 RIWA 343 (343)
T ss_pred eecC
Confidence 9994
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=296.42 Aligned_cols=457 Identities=16% Similarity=0.171 Sum_probs=319.1
Q ss_pred CCceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC
Q 002407 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 409 ~g~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~ 488 (927)
+-...+.....+..++++.....-++-.+ .+.....+..|...++-..|||.|-|+|+|...|+|||||....
T Consensus 19 g~~~~ig~dpkgd~ilY~nGksv~ir~i~-------~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~ 91 (603)
T KOG0318|consen 19 GVPIIIGGDPKGDNILYTNGKSVIIRNID-------NPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQK 91 (603)
T ss_pred CcceEeccCCCCCeEEEeCCCEEEEEECC-------CccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCc
Confidence 33333443444556677666655554443 22234556889999999999999999999999999999998764
Q ss_pred cccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCC
Q 002407 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568 (927)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~ 568 (927)
+.+.. ........+|.-+.|+.++..+++.+.+..-.- ..+...++..+-.+.||..
T Consensus 92 ~hiLK---nef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg--------------------~~F~~DSG~SvGei~GhSr 148 (603)
T KOG0318|consen 92 EHILK---NEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG--------------------HVFLWDSGNSVGEITGHSR 148 (603)
T ss_pred ceeee---eeeeecccccccceeCCCCcEEEEEecCcccee--------------------EEEEecCCCccceeeccce
Confidence 32211 112344567888999999988887655432100 0122236678889999999
Q ss_pred CEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe
Q 002407 569 DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645 (927)
Q Consensus 569 ~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~ 645 (927)
.|++++|-|. =+++||+.|++|.+|+=.-.+....+. |...|.|+.|+| |+.+|++.+.||+|.+||=.+++.+..
T Consensus 149 ~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~ 227 (603)
T KOG0318|consen 149 RINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGE 227 (603)
T ss_pred eEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEE
Confidence 9999999998 469999999999999977666666666 999999999999 999999999999999999999988865
Q ss_pred c----cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 646 N----DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 646 ~----~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
+ .|.+.|.+++|+||++.|++++.|.+++|||+.+.+++.++.+.. .-......+.|..+ .|++.+.
T Consensus 228 l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~------~v~dqqvG~lWqkd---~lItVSl 298 (603)
T KOG0318|consen 228 LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGS------TVEDQQVGCLWQKD---HLITVSL 298 (603)
T ss_pred ecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCC------chhceEEEEEEeCC---eEEEEEc
Confidence 5 467899999999999999999999999999999999988876421 12234445556532 7999999
Q ss_pred CCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccc-cccceeeeeeeecCCCeEE
Q 002407 722 DSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRS-KSITVTHSYEHFHCQDVSV 800 (927)
Q Consensus 722 Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~-~~~~~~~~~~~~~~~~v~v 800 (927)
+|.|.+++............|...|+++..++++++|++|+.||.|.-|++.++..-... +.+........-...+...
T Consensus 299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~ 378 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF 378 (603)
T ss_pred CcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEE
Confidence 999999997655444444556788999999999999999999999999999876432110 1111111111111111112
Q ss_pred EEecCCce-----------------------------------------------------------------------e
Q 002407 801 AIPWPGVG-----------------------------------------------------------------------D 809 (927)
Q Consensus 801 avs~~g~~-----------------------------------------------------------------------~ 809 (927)
.+.|+.+. .
T Consensus 379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v 458 (603)
T KOG0318|consen 379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV 458 (603)
T ss_pred EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence 22222222 2
Q ss_pred EEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhcc-cc---ccCCC
Q 002407 810 TWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL-TA---RNRSP 885 (927)
Q Consensus 810 i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~-~~---~~~s~ 885 (927)
+++.+++.+......-.... .+..-....-..+.++||||+.|||++- ..+.+..|+.+.-.. +. -|.+.
T Consensus 459 aVGG~Dgkvhvysl~g~~l~--ee~~~~~h~a~iT~vaySpd~~yla~~D----a~rkvv~yd~~s~~~~~~~w~FHtak 532 (603)
T KOG0318|consen 459 AVGGQDGKVHVYSLSGDELK--EEAKLLEHRAAITDVAYSPDGAYLAAGD----ASRKVVLYDVASREVKTNRWAFHTAK 532 (603)
T ss_pred EEecccceEEEEEecCCccc--ceeeeecccCCceEEEECCCCcEEEEec----cCCcEEEEEcccCceecceeeeeeee
Confidence 22233333332222111111 1111123345667789999999999965 667888898764322 11 23333
Q ss_pred ceecccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 886 RTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 886 v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
+. +++|||+.+.+|||+.|-.|.||.
T Consensus 533 I~--------~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 533 IN--------CVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EE--------EEEeCCCceEEEeccccceEEEEE
Confidence 32 689999999999999999999997
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=312.02 Aligned_cols=281 Identities=21% Similarity=0.362 Sum_probs=252.5
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCC--CCeecccccCCceeee
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE--PTSLSPKHLDNHLEKK 530 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd--~~~la~~~~~~~i~~~ 530 (927)
.|-+.+|..+.|+.|++.||||+.+|.++||+..+...+.++ .+|...+..+.|.|. ...++++..++.+
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-----~gH~~~v~~~~fhP~~~~~~lat~s~Dgtv--- 243 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-----RGHTSRVGAAVFHPVDSDLNLATASADGTV--- 243 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-----eccccceeeEEEccCCCccceeeeccCCce---
Confidence 367889999999999999999999999999999998777775 688999999999997 6788888888887
Q ss_pred cccccccccccccCcccccceEeecCC-CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~ 607 (927)
++|.++. .++..|.+|...|..++|+|+ .+|+|++.|.+-++||+.++..+.... |.
T Consensus 244 --------------------klw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs 303 (459)
T KOG0272|consen 244 --------------------KLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHS 303 (459)
T ss_pred --------------------eeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccc
Confidence 5666655 889999999999999999999 789999999999999999998766554 99
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
..|.+++|+| +|.++++|+.|..-+|||++++.++.++. |-..|..|+|+|+|..|++|+.|++++|||++....+..
T Consensus 304 ~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 304 KGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT 382 (459)
T ss_pred cccceeEecC-CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccccee
Confidence 9999999999 99999999999999999999999887554 558999999999999999999999999999999888666
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCc
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
+ .+|..-|+.+.|.|+...+|++++.|++++||........-....|...|.++.+++|+.+|++++.|.+
T Consensus 383 i---------pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT 453 (459)
T KOG0272|consen 383 I---------PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRT 453 (459)
T ss_pred c---------ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCce
Confidence 5 4899999999999977779999999999999997765555555556888999999999999999999999
Q ss_pred EEEEE
Q 002407 767 VYVWK 771 (927)
Q Consensus 767 I~IWd 771 (927)
|++|.
T Consensus 454 ~KLW~ 458 (459)
T KOG0272|consen 454 IKLWR 458 (459)
T ss_pred eeecc
Confidence 99995
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=306.47 Aligned_cols=445 Identities=17% Similarity=0.190 Sum_probs=336.4
Q ss_pred eeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcc
Q 002407 412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA-HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER 490 (927)
Q Consensus 412 ~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~g-H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~ 490 (927)
+...+......++++.....-+++|.+.++.+.+.. ++ |+++|..|+|+|.|.+||+||.|+.|+|||+..+.+
T Consensus 65 ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irsw-----Ka~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~ 139 (775)
T KOG0319|consen 65 ITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSW-----KAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC 139 (775)
T ss_pred hheeeecCCccEEEEeeccceEEEEEcccchHhHhH-----hhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE
Confidence 445555556778899999999999999888666554 56 999999999999999999999999999999999888
Q ss_pred cceeecccccCccccEEEEccCCCC--CeecccccCCceeeecccccccccccccCcccccceEeecCC--CceEEEccC
Q 002407 491 KGELLEKQEDGHLNMLLLANGSPEP--TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD--KPICSFQGH 566 (927)
Q Consensus 491 ~~~l~~~~~~~~~~~v~~v~~spd~--~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~--k~i~~l~gH 566 (927)
...+ .++.+.|..+.|.|+. .+|+++..++.+ .+|++.. .++..+..|
T Consensus 140 th~f-----kG~gGvVssl~F~~~~~~~lL~sg~~D~~v-----------------------~vwnl~~~~tcl~~~~~H 191 (775)
T KOG0319|consen 140 THSF-----KGHGGVVSSLLFHPHWNRWLLASGATDGTV-----------------------RVWNLNDKRTCLHTMILH 191 (775)
T ss_pred EEEe-----cCCCceEEEEEeCCccchhheeecCCCceE-----------------------EEEEcccCchHHHHHHhh
Confidence 8776 6888999999999974 457777777777 4444432 235677788
Q ss_pred CCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecC--------------------------------------
Q 002407 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHS-------------------------------------- 607 (927)
Q Consensus 567 ~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~-------------------------------------- 607 (927)
...|++|+|.++ ..+++++.|+.+.|||+.+-+++++++..
T Consensus 192 ~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~ 271 (775)
T KOG0319|consen 192 KSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGK 271 (775)
T ss_pred hhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccch
Confidence 888888888888 66888888888888887654433333222
Q ss_pred ----------------------------------------------------CceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 608 ----------------------------------------------------DYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 608 ----------------------------------------------------~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
+.|.+++|-..+.++|+.++..+.+++|
T Consensus 272 ~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y 351 (775)
T KOG0319|consen 272 CVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLY 351 (775)
T ss_pred hhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEE
Confidence 2344444432245566666666666666
Q ss_pred eCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 636 SIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 636 Dl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
++.+..+.-..+|.+.|.++....+|-+|++|+.|.++++|.++++...... .....+|...|.+++++..+..+
T Consensus 352 ~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~-----~a~~~gH~~svgava~~~~~asf 426 (775)
T KOG0319|consen 352 TLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLC-----VAQANGHTNSVGAVAGSKLGASF 426 (775)
T ss_pred ecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhh-----hhhhcccccccceeeecccCccE
Confidence 6666555555677788999997778889999999999999988544332211 12235899999999999988889
Q ss_pred EEEEECCCcEEEEECCc---------ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccce
Q 002407 716 VLVTSADSRIRVVDGID---------LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITV 786 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~---------~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~ 786 (927)
|++++.|.+|++|+... +...+....|...|.+++++|+.++|||||.|.+.+||+++.......+.++..
T Consensus 427 fvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R 506 (775)
T KOG0319|consen 427 FVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR 506 (775)
T ss_pred EEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc
Confidence 99999999999999654 112234456788899999999999999999999999999998888888888888
Q ss_pred eeeeeeecCCCeEEE-EecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccC
Q 002407 787 THSYEHFHCQDVSVA-IPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFD 865 (927)
Q Consensus 787 ~~~~~~~~~~~v~va-vs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d 865 (927)
..-+..|...+..++ .+.+.++.+|...+... +....+|...+.- +.|--++..|.|++ .|
T Consensus 507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC--lkT~eGH~~aVlr------------a~F~~~~~qliS~~----ad 568 (775)
T KOG0319|consen 507 GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC--LKTFEGHTSAVLR------------ASFIRNGKQLISAG----AD 568 (775)
T ss_pred ceEEEEeccccceeEeccCCceEEEEEecccee--eeeecCccceeEe------------eeeeeCCcEEEecc----CC
Confidence 778888888766555 56678889998775432 2222233332221 45899999999988 89
Q ss_pred ccccccCchhhcc---ccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 866 RISATWPEEKLVL---TARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 866 ~~v~~W~~e~l~~---~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
+-+++|+..+-.. ...|...+- +++.++...+++|||.||.|-+|.-
T Consensus 569 GliKlWnikt~eC~~tlD~H~DrvW--------aL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 569 GLIKLWNIKTNECEMTLDAHNDRVW--------ALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred CcEEEEeccchhhhhhhhhccceeE--------EEeecCccceeEecCCCeEEEEeec
Confidence 9999999764322 345555554 4678899999999999999999984
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=291.98 Aligned_cols=441 Identities=16% Similarity=0.201 Sum_probs=332.6
Q ss_pred cccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeeccc
Q 002407 442 DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK 521 (927)
Q Consensus 442 ~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~ 521 (927)
++......+++.+|-..|.+|.|+.|.++|++|+.|.+++||.+...+.... ....+|...|..+-|..+..-+.+.
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~---~~l~gHkd~VvacfF~~~~~~l~tv 207 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFT---YALNGHKDYVVACFFGANSLDLYTV 207 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccce---EeccCCCcceEEEEeccCcceEEEE
Confidence 4555666788899999999999999999999999999999999987765332 3357888999999998888878888
Q ss_pred ccCCceeeecccc-ccccccc----c-cCcc--------cccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeC
Q 002407 522 HLDNHLEKKRRGR-SINRKSL----S-LDHM--------VVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM 586 (927)
Q Consensus 522 ~~~~~i~~~~~~~-~~~~~~~----~-~~~~--------~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~ 586 (927)
+.++.+..+.... +...... . .+.. ......|... ..+-+......|++.+|++. ..|+++-.
T Consensus 208 skdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~--~k~~ln~~~~kvtaa~fH~~t~~lvvgFs 285 (893)
T KOG0291|consen 208 SKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKT--KKHYLNQNSSKVTAAAFHKGTNLLVVGFS 285 (893)
T ss_pred ecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEE--EeeeecccccceeeeeccCCceEEEEEec
Confidence 8888876665442 1100000 0 0000 0001111111 01122333478999999998 88999999
Q ss_pred CCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECC-CcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCE
Q 002407 587 DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLD-AKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQG 663 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~D-g~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~ 663 (927)
.|...+|.+....+++.+. ...+|..+.|+. .|++|+.|+.. |.+-||++.+...+. ...|-..+++++++|||++
T Consensus 286 sG~f~LyelP~f~lih~LSis~~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~ 364 (893)
T KOG0291|consen 286 SGEFGLYELPDFNLIHSLSISDQKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQL 364 (893)
T ss_pred CCeeEEEecCCceEEEEeecccceeeEEEecc-cCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcE
Confidence 9999999999999999998 558999999998 89999988765 789999999987665 4556689999999999999
Q ss_pred EEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeec
Q 002407 664 ALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFR 741 (927)
Q Consensus 664 l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~ 741 (927)
+++|+.||.|+|||...+-+..++. .|+..|+.++|+..+. .+++.+-||+|+.||... ....|...
T Consensus 365 iaTG~eDgKVKvWn~~SgfC~vTFt---------eHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P- 433 (893)
T KOG0291|consen 365 IATGAEDGKVKVWNTQSGFCFVTFT---------EHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSP- 433 (893)
T ss_pred EEeccCCCcEEEEeccCceEEEEec---------cCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCC-
Confidence 9999999999999999999988864 8999999999999886 899999999999999644 33344433
Q ss_pred CCcceEEEEEecCCCEEEEEECCCc-EEEEECCCCCCcccccccceeeeeeeecCCCe-EEEEecCCceeEEeecCC--c
Q 002407 742 NTNSQISASLTANGRYVVSASEDSY-VYVWKYEAESRPSRSKSITVTHSYEHFHCQDV-SVAIPWPGVGDTWGLQDT--Y 817 (927)
Q Consensus 742 ~~~~v~sv~fspdg~~Lasgs~Dg~-I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v-~vavs~~g~~~i~~~~d~--~ 817 (927)
......+++..|.|.++++|+.|.. |+||++++++.+..+.++........|.+.+. .+..+|+.++++|++-+. .
T Consensus 434 ~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~ 513 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT 513 (893)
T ss_pred CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce
Confidence 2334457888888999999998875 99999999999999989888888778887654 444789999999987665 2
Q ss_pred eeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccc----c--------ccCCC
Q 002407 818 LDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLT----A--------RNRSP 885 (927)
Q Consensus 818 i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~----~--------~~~s~ 885 (927)
...+.. ..-+..++|+|+|+.||.++ .|+.+.+|+.+..... . .....
T Consensus 514 vEtl~i----------------~sdvl~vsfrPdG~elaVaT----ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~ 573 (893)
T KOG0291|consen 514 VETLEI----------------RSDVLAVSFRPDGKELAVAT----LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDR 573 (893)
T ss_pred eeeEee----------------ccceeEEEEcCCCCeEEEEE----ecceEEEEEhhhceeeccccchhhccccccccce
Confidence 222221 12234567999999999998 8889999987632111 0 00111
Q ss_pred ceecccCCC---CCcccCCCCCEEEEEcCCCcEEEee
Q 002407 886 RTSLDISNG---ISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 886 v~s~~~~~~---~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
++......+ ..+.+|+||+.|++||....|.+|+
T Consensus 574 ~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 574 ITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred eehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 111111111 1588999999999999999999988
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=296.76 Aligned_cols=279 Identities=20% Similarity=0.292 Sum_probs=237.7
Q ss_pred ccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccC-CCCEEEEEECCCcEEEEeCCCC
Q 002407 564 QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPV-DDRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 564 ~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~-dg~~L~sgs~Dg~I~IWDl~t~ 640 (927)
.|-..+|..+.|+.+ ..|+||+.+|.++||+..+...+.+|. |...|.++.|+|. ++..|++|+.||++++|++.+.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 367789999999998 889999999999999999998888887 9999999999996 3778999999999999999997
Q ss_pred cEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 641 QVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 641 ~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
..+. +..|...|..++|+|+|++|++++.|.+-++||++++...... .+|...|.+++|.|+|. ++++|
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q---------EGHs~~v~~iaf~~DGS-L~~tG 321 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ---------EGHSKGVFSIAFQPDGS-LAATG 321 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh---------cccccccceeEecCCCc-eeecc
Confidence 6665 5566689999999999999999999999999999998766543 59999999999999998 89999
Q ss_pred ECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeE
Q 002407 720 SADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVS 799 (927)
Q Consensus 720 s~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~ 799 (927)
+.|..-+|||+++..+.+....|...|.++.|+|+|..||||+.|++++|||++......... .|.
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip----------AH~---- 387 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP----------AHS---- 387 (459)
T ss_pred CccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc----------ccc----
Confidence 999999999998877777777788999999999999999999999999999998754321111 111
Q ss_pred EEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecC-CCCeEEEeccccccCccccccCchh---
Q 002407 800 VAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSP-LNGTISSATNSYFFDRISATWPEEK--- 875 (927)
Q Consensus 800 vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSP-dg~~Lasas~~~~~d~~v~~W~~e~--- 875 (927)
.-++.+.|+| .|.+|++++ .|.++++|....
T Consensus 388 -----------------------------------------nlVS~Vk~~p~~g~fL~Tas----yD~t~kiWs~~~~~~ 422 (459)
T KOG0272|consen 388 -----------------------------------------NLVSQVKYSPQEGYFLVTAS----YDNTVKIWSTRTWSP 422 (459)
T ss_pred -----------------------------------------chhhheEecccCCeEEEEcc----cCcceeeecCCCccc
Confidence 1112344888 677899987 889999998763
Q ss_pred hccccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 876 LVLTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 876 l~~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
+....+|...+.++ ..++||++|+|++.|.+||+|.
T Consensus 423 ~ksLaGHe~kV~s~--------Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 423 LKSLAGHEGKVISL--------DISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred chhhcCCccceEEE--------EeccCCceEEEeccCceeeecc
Confidence 33467888888754 6778999999999999999996
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-30 Score=281.23 Aligned_cols=444 Identities=16% Similarity=0.220 Sum_probs=327.8
Q ss_pred CCceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecC
Q 002407 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE--DCVIHVWQVV 486 (927)
Q Consensus 409 ~g~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~--DgtVrVWdv~ 486 (927)
.+...++-......++++|...|+||+|+...++. ....+++.-.++|..|+|+.|++.|+..|+ ++..+++-++
T Consensus 59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h---iLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D 135 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH---ILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD 135 (603)
T ss_pred cceeEEEEeCCCceEEeecCCcCcEEEEeccCcce---eeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec
Confidence 34445555556666789999999999999887643 233567778899999999999999988764 3344444445
Q ss_pred cCcccceeecccccCccccEEEEccCCC-CCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEcc
Q 002407 487 ESERKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG 565 (927)
Q Consensus 487 ~~~~~~~l~~~~~~~~~~~v~~v~~spd-~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~g 565 (927)
++..+.++ .+|...+.++.+.|. ...+++++.++.+.+..-. .-|...+++.
T Consensus 136 SG~SvGei-----~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP----------------------PFKFk~s~r~ 188 (603)
T KOG0318|consen 136 SGNSVGEI-----TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP----------------------PFKFKSSFRE 188 (603)
T ss_pred CCCcccee-----eccceeEeeeeccCCCceEEEeccCCCeEEEeeCC----------------------Ceeeeecccc
Confidence 56666665 688899999999996 6678888888876432111 1144456778
Q ss_pred CCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC
Q 002407 566 HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~----h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~ 640 (927)
|..-|.|+.|+|| .++++++.||+|.+||=.+++.+..+. |.+.|.+|.|+| |+..|++++.|.+++|||+.+.
T Consensus 189 HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~ 267 (603)
T KOG0318|consen 189 HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTN 267 (603)
T ss_pred cccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeecc
Confidence 9999999999999 789999999999999999999999886 999999999999 9999999999999999999776
Q ss_pred cEEE--------------------------------------------eccCCCcEEEEEECCCCCEEEEEECCCeEEEE
Q 002407 641 QVVD--------------------------------------------WNDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676 (927)
Q Consensus 641 ~~v~--------------------------------------------~~~~~~~V~sla~spdg~~l~tgs~Dg~I~Iw 676 (927)
+++. ...|...|++++.+|++++|++|+.||.|.-|
T Consensus 268 slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 268 SLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred ceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence 4421 13455789999999999999999999999999
Q ss_pred ECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-----------------------c-
Q 002407 677 NTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-----------------------D- 732 (927)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-----------------------~- 732 (927)
+..++..-.... ..|...|.+++-+..+ .+++.+.|.++++.+.. .
T Consensus 348 ~~~~g~~~~~~g--------~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~ 417 (603)
T KOG0318|consen 348 DSGSGTSDRLAG--------KGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDG 417 (603)
T ss_pred ecCCcccccccc--------ccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCC
Confidence 999876544321 4799999999988755 58999999999998620 0
Q ss_pred ---------ceEEEEeec------CCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc--cccccceeeeeeeecC
Q 002407 733 ---------LVHKFKGFR------NTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS--RSKSITVTHSYEHFHC 795 (927)
Q Consensus 733 ---------~~~~~~~~~------~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~--~~~~~~~~~~~~~~~~ 795 (927)
.+..++.+. ..-...+++++|++.+++.|+.|+.|+||.+....... ....+....+...|++
T Consensus 418 ~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp 497 (603)
T KOG0318|consen 418 GTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP 497 (603)
T ss_pred CEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC
Confidence 001111110 11223568899999999999999999999999865432 2334555566777777
Q ss_pred CCeEEEEe-cCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCch
Q 002407 796 QDVSVAIP-WPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEE 874 (927)
Q Consensus 796 ~~v~vavs-~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e 874 (927)
+...+|+. ..+.+.+|....+... ......|+ .-+..++|||++.++|+++ .|..+-+|..+
T Consensus 498 d~~yla~~Da~rkvv~yd~~s~~~~----------~~~w~FHt---akI~~~aWsP~n~~vATGS----lDt~Viiysv~ 560 (603)
T KOG0318|consen 498 DGAYLAAGDASRKVVLYDVASREVK----------TNRWAFHT---AKINCVAWSPNNKLVATGS----LDTNVIIYSVK 560 (603)
T ss_pred CCcEEEEeccCCcEEEEEcccCcee----------cceeeeee---eeEEEEEeCCCceEEEecc----ccceEEEEEcc
Confidence 77666554 3455666666655431 11111111 1123467999999999987 99999999876
Q ss_pred hhc----cccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 875 KLV----LTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 875 ~l~----~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
+.. ....|...+..+ +|- |...||+.|.|-.||+|+
T Consensus 561 kP~~~i~iknAH~~gVn~v--------~wl-de~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 561 KPAKHIIIKNAHLGGVNSV--------AWL-DESTVVSSGQDANIKVWN 600 (603)
T ss_pred ChhhheEeccccccCceeE--------EEe-cCceEEeccCcceeEEec
Confidence 432 234555445443 333 466789999999999998
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-30 Score=289.31 Aligned_cols=436 Identities=18% Similarity=0.232 Sum_probs=316.3
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcc--cc-eeecccc
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER--KG-ELLEKQE 499 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~--~~-~l~~~~~ 499 (927)
++++..++|+...-+...... .+.+ .-+.+|.||+|||+|+++|.|. .+.+.||....... .. -.+....
T Consensus 69 lllavdE~g~~~lvs~~~r~V-----lh~f-~fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~ 141 (893)
T KOG0291|consen 69 LLLAVDERGRALLVSLLSRSV-----LHRF-NFKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTY 141 (893)
T ss_pred EEEEEcCCCcEEEEeccccee-----eEEE-eecCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeee
Confidence 455556666655554332211 1111 1367899999999999998886 56899999865433 11 1124445
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
.++...+.++.|+.|..++++++.+......... ....-..+.+.+|.+.|..+-|..+
T Consensus 142 ~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~--------------------~~k~~~~~~l~gHkd~VvacfF~~~~ 201 (893)
T KOG0291|consen 142 LGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVD--------------------GNKNLFTYALNGHKDYVVACFFGANS 201 (893)
T ss_pred cCCccceeEEEeccCCceEEeccccceEEEEEec--------------------cccccceEeccCCCcceEEEEeccCc
Confidence 6888899999999999999998887765322111 1122335678899999999999988
Q ss_pred cEEEEEeCCCcEEEEeCCC-----------------------CcE-----E--EE----Ee-cCCceEEEEEccCCCCEE
Q 002407 579 QHLLSSSMDKTVRLWHLSS-----------------------KTC-----L--KI----FS-HSDYVTCIQFNPVDDRYF 623 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t-----------------------~~~-----~--~~----~~-h~~~V~~v~fsp~dg~~L 623 (927)
..|+|.+.||.+.+|.... ++. . +. +. ....|++.+|++ .-+.|
T Consensus 202 ~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t~~l 280 (893)
T KOG0291|consen 202 LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-GTNLL 280 (893)
T ss_pred ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-CceEE
Confidence 6799999999999998761 111 0 00 11 237899999999 88999
Q ss_pred EEEECCCcEEEEeCCCCcEEEeccCC-CcEEEEEECCCCCEEEEEECC-CeEEEEECCCCeeeeecccccccccccCCCC
Q 002407 624 ISGSLDAKVRIWSIPERQVVDWNDLH-EMVTAACYTPDGQGALVGSYK-GSCHLYNTSENKLQQKSPINLQNKKKRSHQR 701 (927)
Q Consensus 624 ~sgs~Dg~I~IWDl~t~~~v~~~~~~-~~V~sla~spdg~~l~tgs~D-g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~ 701 (927)
++|-..|...+|.++...++...... ..|..++|+..|.+|+.|+.. |.+.||+......+.+. .+|..
T Consensus 281 vvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ---------QgH~~ 351 (893)
T KOG0291|consen 281 VVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ---------QGHSD 351 (893)
T ss_pred EEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec---------ccccc
Confidence 99999999999999999998876665 789999999999999999876 89999999887766554 48999
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccc
Q 002407 702 KITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRS 781 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~ 781 (927)
.+++++++|||+ ++++|+.||+|+|||.....+......|...++.+.|+..|+.|++++.||+|+.||+.....-.+.
T Consensus 352 ~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 352 RITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred ceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeee
Confidence 999999999997 8999999999999998886666666667888999999999999999999999999999875432222
Q ss_pred cccceeeeeeeecCCCeEEEEecCCceeEEeecCC-ceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEecc
Q 002407 782 KSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDT-YLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATN 860 (927)
Q Consensus 782 ~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~-~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~ 860 (927)
......+ -..+++...|.....+.++. .+..|+..+++..-+ +.||++.+. .++|+|++..||+++
T Consensus 431 t~P~p~Q--------fscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi--LsGHEgPVs--~l~f~~~~~~LaS~S- 497 (893)
T KOG0291|consen 431 TSPEPIQ--------FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI--LSGHEGPVS--GLSFSPDGSLLASGS- 497 (893)
T ss_pred cCCCcee--------eeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh--hcCCCCcce--eeEEccccCeEEecc-
Confidence 1111100 11334444444433332222 355566555554433 346665443 346999999999987
Q ss_pred ccccCccccccCchhh---ccccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 861 SYFFDRISATWPEEKL---VLTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 861 ~~~~d~~v~~W~~e~l---~~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
+|+++++|+.-.- ..+..+.+.+. +++|+|||+-|+.+..||.|.+|+.
T Consensus 498 ---WDkTVRiW~if~s~~~vEtl~i~sdvl--------~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 498 ---WDKTVRIWDIFSSSGTVETLEIRSDVL--------AVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred ---ccceEEEEEeeccCceeeeEeecccee--------EEEEcCCCCeEEEEEecceEEEEEh
Confidence 9999999986321 00111122222 5799999999999999999999983
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-31 Score=264.43 Aligned_cols=287 Identities=18% Similarity=0.356 Sum_probs=242.6
Q ss_pred cCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecc
Q 002407 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (927)
Q Consensus 418 ~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~ 497 (927)
.+...++++.+.+-+||.|...++ .+..+++...+.|+.+.+.||+++||+|+. ..||+||+.++.
T Consensus 7 ~d~~viLvsA~YDhTIRfWqa~tG-----~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n-------- 72 (311)
T KOG0315|consen 7 TDDPVILVSAGYDHTIRFWQALTG-----ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN-------- 72 (311)
T ss_pred CCCceEEEeccCcceeeeeehhcC-----eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC--------
Confidence 345567889999999999976655 556777878889999999999999999985 579999997653
Q ss_pred cccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC
Q 002407 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (927)
Q Consensus 498 ~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp 577 (927)
..|+.+|.+|+..|+.+.|..
T Consensus 73 -----------------------------------------------------------p~Pv~t~e~h~kNVtaVgF~~ 93 (311)
T KOG0315|consen 73 -----------------------------------------------------------PNPVATFEGHTKNVTAVGFQC 93 (311)
T ss_pred -----------------------------------------------------------CCceeEEeccCCceEEEEEee
Confidence 246778999999999999999
Q ss_pred C-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe--ccCCCcEEE
Q 002407 578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW--NDLHEMVTA 654 (927)
Q Consensus 578 d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~--~~~~~~V~s 654 (927)
+ ..++||++||+++|||++...+.+.|.|..+|+++..+| +...|++|..+|.|++||+....+... .+....|.+
T Consensus 94 dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~s 172 (311)
T KOG0315|consen 94 DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQS 172 (311)
T ss_pred cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceee
Confidence 8 669999999999999999999999999999999999999 888999999999999999988755443 333468999
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc-
Q 002407 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL- 733 (927)
Q Consensus 655 la~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~- 733 (927)
++..|||.+++.+...|++++|++-..+....+. +..+++.|...|..+.++|+++ +|++++.|.+++||+....
T Consensus 173 l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~---P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 173 LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE---PVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred EEEcCCCcEEEEecCCccEEEEEccCCCccccce---EhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCCce
Confidence 9999999999999999999999998754433322 2334578999999999999987 8999999999999997655
Q ss_pred eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccccc
Q 002407 734 VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSK 782 (927)
Q Consensus 734 ~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~ 782 (927)
........+...+..++||.||+||++|+.|+.+++|++..++......
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence 3333344456789999999999999999999999999999987654443
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-31 Score=267.63 Aligned_cols=299 Identities=19% Similarity=0.279 Sum_probs=242.4
Q ss_pred eeeEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 448 KCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 448 ~~q~L~gH~~~I~~vafSpd-G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
..-+|++|++.|+.++..+. -..|++++.|.++.+|++.....
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~------------------------------------ 50 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI------------------------------------ 50 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc------------------------------------
Confidence 34578999999999999987 45889999999999999864310
Q ss_pred eeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~ 605 (927)
..+.+++.|.||...|..+..+++ ++.++++.|+++++||+.+++..+.|.
T Consensus 51 ----------------------------~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~ 102 (315)
T KOG0279|consen 51 ----------------------------KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV 102 (315)
T ss_pred ----------------------------ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEE
Confidence 124677889999999999999999 789999999999999999998888876
Q ss_pred -cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC--CCcEEEEEECCC--CCEEEEEECCCeEEEEECCC
Q 002407 606 -HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL--HEMVTAACYTPD--GQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 606 -h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~--~~~V~sla~spd--g~~l~tgs~Dg~I~IwDl~~ 680 (927)
|...|.+++|+| +...|++|+.|.+|++|++-.......... .+.|.++.|+|+ ..+|+.++.|++|++||+++
T Consensus 103 GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~ 181 (315)
T KOG0279|consen 103 GHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN 181 (315)
T ss_pred ecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence 999999999999 999999999999999999988777665555 689999999997 78999999999999999999
Q ss_pred CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEE
Q 002407 681 NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVS 760 (927)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Las 760 (927)
.++...+ .+|.+.++.++++|||. ++++|+.||.+.+||+......+ ...+...|.+++|+|+...|+.
T Consensus 182 ~~l~~~~---------~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~ly-sl~a~~~v~sl~fspnrywL~~ 250 (315)
T KOG0279|consen 182 CQLRTTF---------IGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLY-SLEAFDIVNSLCFSPNRYWLCA 250 (315)
T ss_pred cchhhcc---------ccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCceeE-eccCCCeEeeEEecCCceeEee
Confidence 8887765 48999999999999998 89999999999999987766643 4456788999999999766666
Q ss_pred EECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccc
Q 002407 761 ASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFST 823 (927)
Q Consensus 761 gs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~ 823 (927)
+. +..|+|||+++......++.-....+...-.+.-..+|.+.+|........++.+..|..
T Consensus 251 at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 251 AT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred cc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 64 555999999997765444321111111111222344455555777777777777777653
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-29 Score=280.66 Aligned_cols=432 Identities=16% Similarity=0.220 Sum_probs=327.2
Q ss_pred cCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecc
Q 002407 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (927)
Q Consensus 418 ~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~ 497 (927)
.+....++.|-.+|.|++|+..+++.. -++.||+.+|++|.|...|..|||||.|+.|.|||+........+
T Consensus 74 ~~d~l~lAVGYaDGsVqif~~~s~~~~-----~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL--- 145 (888)
T KOG0306|consen 74 SDDILLLAVGYADGSVQIFSLESEEIL-----ITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL--- 145 (888)
T ss_pred cCCcceEEEEecCceEEeeccCCCcee-----eeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe---
Confidence 344556799999999999998877443 456899999999999999999999999999999999877766664
Q ss_pred cccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCC-CceEEEccCCCCEEEEEec
Q 002407 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLDLSWS 576 (927)
Q Consensus 498 ~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~~~V~~l~~s 576 (927)
.+|...+...-|..+..++++.+.+..+ ++|++.. .+..+...|.+.|+.+++.
T Consensus 146 --~GHkd~iT~~~F~~~~~~lvS~sKDs~i-----------------------K~WdL~tqhCf~Thvd~r~Eiw~l~~~ 200 (888)
T KOG0306|consen 146 --RGHKDSITQALFLNGDSFLVSVSKDSMI-----------------------KFWDLETQHCFETHVDHRGEIWALVLD 200 (888)
T ss_pred --ecchHHHhHHhccCCCeEEEEeccCceE-----------------------EEEecccceeeeEEecccceEEEEEEe
Confidence 6777788877788777788888788877 5666644 4555667899999999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCC------------------------CcEEEE--------------------E--------
Q 002407 577 KSQHLLSSSMDKTVRLWHLSS------------------------KTCLKI--------------------F-------- 604 (927)
Q Consensus 577 pd~~L~Sgs~DgtV~lWDl~t------------------------~~~~~~--------------------~-------- 604 (927)
+ ..+++++.|+.+++|++.. ++.+.. |
T Consensus 201 ~-~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~ 279 (888)
T KOG0306|consen 201 E-KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEI 279 (888)
T ss_pred c-ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHH
Confidence 7 7888899999999998710 000000 0
Q ss_pred --------------------------------------------------------------------------------
Q 002407 605 -------------------------------------------------------------------------------- 604 (927)
Q Consensus 605 -------------------------------------------------------------------------------- 604 (927)
T Consensus 280 ~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p 359 (888)
T KOG0306|consen 280 AKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSP 359 (888)
T ss_pred HHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCc
Confidence
Q ss_pred -----------ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeE
Q 002407 605 -----------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSC 673 (927)
Q Consensus 605 -----------~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I 673 (927)
.|...|..++|+. +...+++| ..+.|++|+..+.+++..+... .+.+..|.|.++++++|...|.+
T Consensus 360 ~~~~~~~i~~~GHR~dVRsl~vS~-d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 360 EADRTSNIEIGGHRSDVRSLCVSS-DSILLASG-AGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGEL 436 (888)
T ss_pred cccccceeeeccchhheeEEEeec-Cceeeeec-CCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCce
Confidence 1455567777775 44444444 4578999999999999877766 78899999999999999999999
Q ss_pred EEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-------cceEEE-----Eeec
Q 002407 674 HLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-------DLVHKF-----KGFR 741 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-------~~~~~~-----~~~~ 741 (927)
.+||+....++... .+|.+.|..++..|++. .+++++.|.+|++||.. .....+ +...
T Consensus 437 ~vfdlaS~~l~Eti---------~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe 506 (888)
T KOG0306|consen 437 QVFDLASASLVETI---------RAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE 506 (888)
T ss_pred EEEEeehhhhhhhh---------hccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe
Confidence 99999988877664 48999999999999987 79999999999999921 111111 1122
Q ss_pred CCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCC-eEEEEecCCceeEEeecCCceee
Q 002407 742 NTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQD-VSVAIPWPGVGDTWGLQDTYLDE 820 (927)
Q Consensus 742 ~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~-v~vavs~~g~~~i~~~~d~~i~~ 820 (927)
-...|.++.+||||++|+.+--|.+|+||-+++-+--..+-++.....++..+++. ..+..+.+..+.+|+.+=+....
T Consensus 507 l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK 586 (888)
T KOG0306|consen 507 LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK 586 (888)
T ss_pred ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhh
Confidence 35678999999999999999999999999999876555555666666666555543 44445667777777765433211
Q ss_pred ccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhcc---ccccCCCceecccCCCCCc
Q 002407 821 FSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL---TARNRSPRTSLDISNGISS 897 (927)
Q Consensus 821 ~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~---~~~~~s~v~s~~~~~~~~~ 897 (927)
-- ..|. .+...+.|-|+..++++++ .|+.++-|+.+++.. ..+|...+. |+
T Consensus 587 S~------------fAHd--DSvm~V~F~P~~~~FFt~g----KD~kvKqWDg~kFe~iq~L~~H~~ev~--------cL 640 (888)
T KOG0306|consen 587 SF------------FAHD--DSVMSVQFLPKTHLFFTCG----KDGKVKQWDGEKFEEIQKLDGHHSEVW--------CL 640 (888)
T ss_pred hh------------hccc--CceeEEEEcccceeEEEec----CcceEEeechhhhhhheeeccchheee--------ee
Confidence 10 1111 2234456999999999987 899999999886533 446665554 57
Q ss_pred ccCCCCCEEEEEcCCCcEEEeecCC
Q 002407 898 SISAWGMVIVTAGLRGEIRAYQNFG 922 (927)
Q Consensus 898 a~S~dG~vLvTgs~DG~IrvW~~~g 922 (927)
+.+|+|.++|++|.|..||+|...-
T Consensus 641 av~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 641 AVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999999999999999998543
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-30 Score=262.25 Aligned_cols=286 Identities=16% Similarity=0.266 Sum_probs=240.5
Q ss_pred CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
+..++|+||.+.|.++.|++| .+|++++.||.+.|||.-+...++.++ ....|..++|+| .++++++|+.|+...||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEE
Confidence 455889999999999999999 889999999999999999988888887 778999999999 99999999999999999
Q ss_pred eCCCC--c----EE-EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE
Q 002407 636 SIPER--Q----VV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 636 Dl~t~--~----~v-~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
++.+. + +. .+..|...+.++.|.+|+ .|++++.|.++-+||+++++....+ .+|.+.|.++.+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f---------~GH~gDV~slsl 194 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVF---------HGHTGDVMSLSL 194 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEe---------cCCcccEEEEec
Confidence 99865 1 22 356677888899998755 7999999999999999999988876 499999999999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceee
Q 002407 709 APGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTH 788 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~ 788 (927)
.|...+.+++|+-|+..+|||.+........+.|...|.++.|.|+|.-+++|++|++.++||++.......
T Consensus 195 ~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~-------- 266 (343)
T KOG0286|consen 195 SPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV-------- 266 (343)
T ss_pred CCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee--------
Confidence 995556899999999999999887766666667788899999999999999999999999999987643221
Q ss_pred eeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccc
Q 002407 789 SYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRIS 868 (927)
Q Consensus 789 ~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v 868 (927)
|..+. ...+++.++||..|++|+.+. .|.++
T Consensus 267 ----ys~~~-----------------------------------------~~~gitSv~FS~SGRlLfagy----~d~~c 297 (343)
T KOG0286|consen 267 ----YSHDS-----------------------------------------IICGITSVAFSKSGRLLFAGY----DDFTC 297 (343)
T ss_pred ----eccCc-----------------------------------------ccCCceeEEEcccccEEEeee----cCCce
Confidence 11100 012345567999999999965 78889
Q ss_pred cccCchhhcc---ccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 869 ATWPEEKLVL---TARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 869 ~~W~~e~l~~---~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
..|+.-+... +.+|...++ ++..+|||+.++||+||-+||||.
T Consensus 298 ~vWDtlk~e~vg~L~GHeNRvS--------cl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 298 NVWDTLKGERVGVLAGHENRVS--------CLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEeeccccceEEEeeccCCeeE--------EEEECCCCcEEEecchhHheeecC
Confidence 9999865432 457776666 468899999999999999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-30 Score=259.71 Aligned_cols=280 Identities=16% Similarity=0.285 Sum_probs=246.0
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
..+.++.++.+.++-+|+....+.......+.|.||...|..+..++||++.++++.|+++++||+.+++....|
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f----- 101 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF----- 101 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE-----
Confidence 456788899999999999998888777788999999999999999999999999999999999999999777665
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccC--CCCEEEEEecC
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH--LDDVLDLSWSK 577 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH--~~~V~~l~~sp 577 (927)
.+|...|.+++++++...++++..+..+ .+|+..+.+..++..+ .+.|.|+.|+|
T Consensus 102 ~GH~~dVlsva~s~dn~qivSGSrDkTi-----------------------klwnt~g~ck~t~~~~~~~~WVscvrfsP 158 (315)
T KOG0279|consen 102 VGHTKDVLSVAFSTDNRQIVSGSRDKTI-----------------------KLWNTLGVCKYTIHEDSHREWVSCVRFSP 158 (315)
T ss_pred EecCCceEEEEecCCCceeecCCCccee-----------------------eeeeecccEEEEEecCCCcCcEEEEEEcC
Confidence 6889999999999999999999999888 5677777777777655 78999999999
Q ss_pred C---cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEE
Q 002407 578 S---QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVT 653 (927)
Q Consensus 578 d---~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~ 653 (927)
+ ..|++++.|++|++||+++.+....+. |+..++.++++| ||.+.++|+.||.+.+||++.++.+..+.+...|.
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~ 237 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVN 237 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccCCceeEeccCCCeEe
Confidence 7 579999999999999999998888776 999999999999 99999999999999999999999999999999999
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 654 AACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 654 sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
+++|+|+.-.|+.+. +..|+|||+.++.++..+.+.......+.......+++|+++|. .|++|..|+.|++|..
T Consensus 238 sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~-tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 238 SLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ-TLFAGYTDNVIRVWQV 312 (315)
T ss_pred eEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc-EEEeeecCCcEEEEEe
Confidence 999999887776665 45599999999998887766544332333445567889999998 7999999999999974
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=289.42 Aligned_cols=421 Identities=18% Similarity=0.204 Sum_probs=320.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
.-...|++++..||+++|++++....+++|++.+++.+..+ ...|..++..+++.|.+.++++++.++.+
T Consensus 60 ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irsw----Ka~He~Pvi~ma~~~~g~LlAtggaD~~v------ 129 (775)
T KOG0319|consen 60 EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSW----KAIHEAPVITMAFDPTGTLLATGGADGRV------ 129 (775)
T ss_pred cchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhH----hhccCCCeEEEEEcCCCceEEeccccceE------
Confidence 45678999999999999999999999999999999877776 34578999999999999999999999987
Q ss_pred ccccccccccCcccccceEeecCC-CceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCcE-EEEEe-cC
Q 002407 534 RSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTC-LKIFS-HS 607 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~~-~~~~~-h~ 607 (927)
.+|++.. ...+.|+||.+.|..+.|+|+ ..|++|..|++|++||+..+.. +.++. |.
T Consensus 130 -----------------~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~ 192 (775)
T KOG0319|consen 130 -----------------KVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHK 192 (775)
T ss_pred -----------------EEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhh
Confidence 5666654 567899999999999999998 4589999999999999996554 55554 99
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCC-----CCEEEEEECCCeEEEEECCCCe
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPD-----GQGALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spd-----g~~l~tgs~Dg~I~IwDl~~~~ 682 (927)
+.|++++|.+ ++..+++++.|..+.|||+.+.+..........+.++.+-++ +.++++++.+|.+++||..+++
T Consensus 193 S~vtsL~~~~-d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~ 271 (775)
T KOG0319|consen 193 SAVTSLAFSE-DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGK 271 (775)
T ss_pred hheeeeeecc-CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccch
Confidence 9999999999 899999999999999999987777777777777888888776 6789999999999999887654
Q ss_pred eeeecccc-cc---------------------------------------------------------------------
Q 002407 683 LQQKSPIN-LQ--------------------------------------------------------------------- 692 (927)
Q Consensus 683 ~~~~~~i~-~~--------------------------------------------------------------------- 692 (927)
+....... .+
T Consensus 272 ~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y 351 (775)
T KOG0319|consen 272 CVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLY 351 (775)
T ss_pred hhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEE
Confidence 33221110 00
Q ss_pred ------cccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC----cceEEEEeecCCcceEEEEEecCC-CEEEEE
Q 002407 693 ------NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI----DLVHKFKGFRNTNSQISASLTANG-RYVVSA 761 (927)
Q Consensus 693 ------~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~----~~~~~~~~~~~~~~v~sv~fspdg-~~Lasg 761 (927)
-....+|...|.++....+| .+|++++.|.++++|... ..........|...|.+++++..+ .+|+++
T Consensus 352 ~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsv 430 (775)
T KOG0319|consen 352 TLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSV 430 (775)
T ss_pred ecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEe
Confidence 00012566677777744444 389999999999999542 222223334456778889887654 689999
Q ss_pred ECCCcEEEEECCCCCCcccccccceeeeeeeecCCC-eEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcc
Q 002407 762 SEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQD-VSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDC 840 (927)
Q Consensus 762 s~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~-v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~ 840 (927)
|.|++|++|++...+.... .........+..|.++ ..++++.+........+|.....|... +......+.||...
T Consensus 431 S~D~tlK~W~l~~s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le--~~~l~~vLsGH~RG 507 (775)
T KOG0319|consen 431 SQDCTLKLWDLPKSKETAF-PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE--QLRLLGVLSGHTRG 507 (775)
T ss_pred cCCceEEEecCCCcccccc-cceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc--CceEEEEeeCCccc
Confidence 9999999999987332221 1122222334445444 466777777777777888888888765 33334445677655
Q ss_pred cCcceeeecCCCCeEEEeccccccCccccccCchhhcc---ccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEE
Q 002407 841 RSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL---TARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRA 917 (927)
Q Consensus 841 ~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~---~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~Irv 917 (927)
+.. +.|+|..+.+|+++ .|+++++|..+.... ..+|.+.+. .++|-.+|+.|++|+.||.||+
T Consensus 508 vw~--V~Fs~~dq~laT~S----gD~TvKIW~is~fSClkT~eGH~~aVl--------ra~F~~~~~qliS~~adGliKl 573 (775)
T KOG0319|consen 508 VWC--VSFSKNDQLLATCS----GDKTVKIWSISTFSCLKTFEGHTSAVL--------RASFIRNGKQLISAGADGLIKL 573 (775)
T ss_pred eEE--EEeccccceeEecc----CCceEEEEEeccceeeeeecCccceeE--------eeeeeeCCcEEEeccCCCcEEE
Confidence 544 45999999999987 999999999886544 345666554 3578889999999999999999
Q ss_pred eec
Q 002407 918 YQN 920 (927)
Q Consensus 918 W~~ 920 (927)
|..
T Consensus 574 Wni 576 (775)
T KOG0319|consen 574 WNI 576 (775)
T ss_pred Eec
Confidence 985
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=257.87 Aligned_cols=273 Identities=24% Similarity=0.395 Sum_probs=236.9
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
..+.+|++.|.+++|+|+|.+|||||.|..|.+|++....
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc---------------------------------------- 80 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC---------------------------------------- 80 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc----------------------------------------
Confidence 4568999999999999999999999999999999964321
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~ 607 (927)
+....+++|.+.|..+.|.++ ..|++++.|++|+.||++++++++.+. |.
T Consensus 81 ----------------------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~ 132 (338)
T KOG0265|consen 81 ----------------------------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHT 132 (338)
T ss_pred ----------------------------cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcccc
Confidence 122345689999999999999 889999999999999999999999888 99
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
..|+.+.-...+..++.+++.|++++|||+++...++.+..+..+++++|...+..+++|+-|+.|++||++.+......
T Consensus 133 ~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~l 212 (338)
T KOG0265|consen 133 SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTL 212 (338)
T ss_pred ceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEe
Confidence 99999985554566788999999999999999999999988999999999999999999999999999999998887775
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC------cceEEEEeecCCc--ceEEEEEecCCCEEE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI------DLVHKFKGFRNTN--SQISASLTANGRYVV 759 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~------~~~~~~~~~~~~~--~v~sv~fspdg~~La 759 (927)
.+|...|+.+..+|+|. .+++-+.|.++++||.+ .++..+.++.+.. ....++|+|+++++.
T Consensus 213 ---------sGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ 282 (338)
T KOG0265|consen 213 ---------SGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKIT 282 (338)
T ss_pred ---------ecccCceeeEEeccCCC-ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccc
Confidence 49999999999999987 79999999999999953 3567777776643 345789999999999
Q ss_pred EEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEE
Q 002407 760 SASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSV 800 (927)
Q Consensus 760 sgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~v 800 (927)
+|+.|..+++||.......-...++........||+..-.+
T Consensus 283 ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~ii 323 (338)
T KOG0265|consen 283 AGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPII 323 (338)
T ss_pred cccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEE
Confidence 99999999999998877666777777777777888765443
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=250.81 Aligned_cols=289 Identities=20% Similarity=0.365 Sum_probs=234.3
Q ss_pred eeeeeEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccC
Q 002407 446 LYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 446 l~~~q~L~gH~~~I~~vafSpd-G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
+...+.+++|++.|+.++|+|- |..|||||.|+.||||+...+.. .........+|...|..++|+|.+.+|++++.+
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 4556888999999999999998 89999999999999999985221 222223356899999999999999999999999
Q ss_pred CceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC---cE
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK---TC 600 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~---~~ 600 (927)
....++.... -.-+.+.++.||...|.+++|+++ ++|+|++.|+.|-||.+..+ ++
T Consensus 83 ~t~~Iw~k~~--------------------~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec 142 (312)
T KOG0645|consen 83 ATVVIWKKED--------------------GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFEC 142 (312)
T ss_pred ceEEEeecCC--------------------CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEE
Confidence 8774443221 122567889999999999999999 88999999999999999854 45
Q ss_pred EEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCC-CC--cEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEE
Q 002407 601 LKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP-ER--QVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675 (927)
Q Consensus 601 ~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~-t~--~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~I 675 (927)
+.++. |+..|..+.|+| ...+|++++.|.+|++|.-. .. .+++ +..++..|.+++|++.|..|++++.|++++|
T Consensus 143 ~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~I 221 (312)
T KOG0645|consen 143 IAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSI 221 (312)
T ss_pred EeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEe
Confidence 66665 999999999999 99999999999999999866 32 3444 4455569999999999999999999999999
Q ss_pred EECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--------ceEEEEeecCCcceE
Q 002407 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--------LVHKFKGFRNTNSQI 747 (927)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--------~~~~~~~~~~~~~v~ 747 (927)
|-....- . ..|...++.+.|. ++ .|++++.|+.|+||.... ++.. ....|...|.
T Consensus 222 w~~~~~~-----~--------~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVN 284 (312)
T KOG0645|consen 222 WRLYTDL-----S--------GMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVN 284 (312)
T ss_pred eeeccCc-----c--------hhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccc
Confidence 9865211 1 3577889999999 44 799999999999997221 1111 2234566899
Q ss_pred EEEEecC-CCEEEEEECCCcEEEEECC
Q 002407 748 SASLTAN-GRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 748 sv~fspd-g~~Lasgs~Dg~I~IWdl~ 773 (927)
++.|.|. ..+|++++.||.|++|.+.
T Consensus 285 sV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 285 SVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999995 6899999999999999875
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=280.98 Aligned_cols=288 Identities=20% Similarity=0.404 Sum_probs=247.7
Q ss_pred eeeEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 448 KCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 448 ~~q~L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
...++.||+..|.++.|.| .+.+|++++.|+.|+||++-.
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~--------------------------------------- 246 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD--------------------------------------- 246 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec---------------------------------------
Confidence 3467899999999999999 899999999999999999743
Q ss_pred eeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~ 605 (927)
.++++++|.||..+|.+++|+++ ..+++++.|++|++||+++|+++..|.
T Consensus 247 -----------------------------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~ 297 (503)
T KOG0282|consen 247 -----------------------------DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH 297 (503)
T ss_pred -----------------------------CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe
Confidence 23567788999999999999999 679999999999999999999999999
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC-CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeee
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~-~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
....++|+.|+|.+.+.|++|+.|+.|+.||++++++++...++ ..|..+.|-++|+.+++.+.|++++||+.+....+
T Consensus 298 ~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i 377 (503)
T KOG0282|consen 298 LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPI 377 (503)
T ss_pred cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccc
Confidence 99999999999955599999999999999999999998866655 79999999999999999999999999999877655
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-----cceEEEEeecCCcceEEEEEecCCCEEE
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-----DLVHKFKGFRNTNSQISASLTANGRYVV 759 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-----~~~~~~~~~~~~~~v~sv~fspdg~~La 759 (927)
.... ......+.++..+|.++ ++++=+.|..|.+|... +....|++|...+.-..+.|||||.+|+
T Consensus 378 k~i~--------~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~ 448 (503)
T KOG0282|consen 378 KNIA--------DPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC 448 (503)
T ss_pred hhhc--------chhhccCcceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE
Confidence 4432 23445677899999887 78888999999999843 4566788888888889999999999999
Q ss_pred EEECCCcEEEEECCCCCCcccccccceeeeeeeecCC--CeEEEEecCCceeEEe
Q 002407 760 SASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQ--DVSVAIPWPGVGDTWG 812 (927)
Q Consensus 760 sgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~--~v~vavs~~g~~~i~~ 812 (927)
+|+.||.+++||.++-+.....+.+........||+. ...++..|+|.+.+|.
T Consensus 449 SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 449 SGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999998887777766555555566653 4566778999988873
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-28 Score=258.00 Aligned_cols=283 Identities=27% Similarity=0.452 Sum_probs=233.9
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
++|++|.+.|++++|+|++++|++++.||.|++|++.+++....+ ..+...+..+.+.+++..++++..++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~~~~i-- 75 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-----KGHTGPVRDVAASADGTYLASGSSDKTI-- 75 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE-----ecCCcceeEEEECCCCCEEEEEcCCCeE--
Confidence 456799999999999999999999999999999999877644443 3455667788999998888888777766
Q ss_pred ecccccccccccccCcccccceEeecCC-CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h 606 (927)
.+|++.. +.+..+..|...|.++.|+++ ..+++++.|+.|++||+.+++....+. |
T Consensus 76 ---------------------~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 134 (289)
T cd00200 76 ---------------------RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH 134 (289)
T ss_pred ---------------------EEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC
Confidence 3444433 567778889999999999998 566666679999999999888888877 8
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
...|.+++|+| ++.++++++.++.|++||+.+++.+..+ .+...+.+++|+|+++.+++++.++.|++||+..++...
T Consensus 135 ~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 213 (289)
T cd00200 135 TDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213 (289)
T ss_pred CCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceec
Confidence 88999999999 7888888888999999999987766544 444589999999999999999999999999999877665
Q ss_pred ecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS 765 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg 765 (927)
.+ ..+...+.+++|+|++. ++++++.++.|++||............+...+.+++|++++++|++++.|+
T Consensus 214 ~~---------~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 283 (289)
T cd00200 214 TL---------RGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283 (289)
T ss_pred ch---------hhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCC
Confidence 53 25677999999999853 677777799999999764433333335567899999999999999999999
Q ss_pred cEEEEE
Q 002407 766 YVYVWK 771 (927)
Q Consensus 766 ~I~IWd 771 (927)
.|++|+
T Consensus 284 ~i~iw~ 289 (289)
T cd00200 284 TIRIWD 289 (289)
T ss_pred eEEecC
Confidence 999996
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=263.78 Aligned_cols=292 Identities=20% Similarity=0.308 Sum_probs=251.9
Q ss_pred CCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCcCcccc----eeec-----ccccCccccEEEEccCCCCCeecccccC
Q 002407 455 HNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKG----ELLE-----KQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 455 H~~~I~~vafSpdG~-~LaSgs~DgtVrVWdv~~~~~~~----~l~~-----~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
|+.+|.+++|+|-.. .||+|+.|-+.++|++....... .+.+ .........|.+++|+.+|.+|+++..+
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 999999999999665 89999999999999998521111 1111 1122344678999999999999999999
Q ss_pred CceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEE
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKI 603 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~ 603 (927)
+.+ .+|...+..+.+|..|.++|.+|.|+.. .+|++++.|+++.|||..+++..+.
T Consensus 257 G~~-----------------------riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 257 GEA-----------------------RIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred cEE-----------------------EEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 988 6778888999999999999999999998 7899999999999999999999999
Q ss_pred Ee-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE-EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCC
Q 002407 604 FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 604 ~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v-~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~ 681 (927)
|. |..+-..|.|- +...|++++.|+.|+|+.+....++ .+..|+..|.++.|.|.|.+|++++.|++++||.+...
T Consensus 314 f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eeeccCCccceEEe--cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 98 77776888997 4667999999999999999876655 46678899999999999999999999999999999887
Q ss_pred eeeeecccccccccccCCCCCeEEEEEcCCCC--------cEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEec
Q 002407 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSS--------SEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTA 753 (927)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~--------~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fsp 753 (927)
.....+ ..|...|+.+.|+|.++ ..+++++.|++|++||....+.......|..+|.+++|+|
T Consensus 392 ~~~~~l---------~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~ 462 (524)
T KOG0273|consen 392 NSVHDL---------QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP 462 (524)
T ss_pred cchhhh---------hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC
Confidence 776665 48999999999999753 4799999999999999888888888778899999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCCCccc
Q 002407 754 NGRYVVSASEDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 754 dg~~Lasgs~Dg~I~IWdl~s~~~~~~ 780 (927)
+|+|||+|+.||.|.||++++++....
T Consensus 463 ~g~ylAsGs~dg~V~iws~~~~~l~~s 489 (524)
T KOG0273|consen 463 NGRYLASGSLDGCVHIWSTKTGKLVKS 489 (524)
T ss_pred CCcEEEecCCCCeeEeccccchheeEe
Confidence 999999999999999999998765433
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=262.25 Aligned_cols=284 Identities=19% Similarity=0.338 Sum_probs=246.3
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
+.|++|.+.|.||++.|...+|+||+.|++|+|||+.+++...++ .+|...+..+++++...++.+++.+..+
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-----tGhi~~vr~vavS~rHpYlFs~gedk~V-- 217 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-----TGHIETVRGVAVSKRHPYLFSAGEDKQV-- 217 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-----cchhheeeeeeecccCceEEEecCCCee--
Confidence 567899999999999999999999999999999999999987775 6888999999999999999999999888
Q ss_pred ecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h 606 (927)
+.|++. .+.++.+.||-..|.||+.+|. ..|++|+.|.++||||+++...+.++. |
T Consensus 218 ---------------------KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH 276 (460)
T KOG0285|consen 218 ---------------------KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH 276 (460)
T ss_pred ---------------------EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC
Confidence 455553 4678889999999999999998 899999999999999999999999998 9
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
..+|..+.+.| .+..+++|+.|++|++||+..++... ...|+..+.+++.+|....|++++.| .|+-|++..+..+.
T Consensus 277 ~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~ 354 (460)
T KOG0285|consen 277 TNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQ 354 (460)
T ss_pred CCcceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhh
Confidence 99999999999 55679999999999999999987655 55666899999999999999988866 68999999988776
Q ss_pred ecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc--eEEE---Ee---ecCCcceEEEEEecCCCE
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL--VHKF---KG---FRNTNSQISASLTANGRY 757 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~--~~~~---~~---~~~~~~v~sv~fspdg~~ 757 (927)
.+ .+|...|+++....|+ ++++|+..|.|.+||.... .+.. .. ......|.+.+|...|..
T Consensus 355 nl---------sgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~r 423 (460)
T KOG0285|consen 355 NL---------SGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSR 423 (460)
T ss_pred cc---------ccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCce
Confidence 64 4889999999999887 8999999999999994321 1111 11 123456788999999999
Q ss_pred EEEEECCCcEEEEECCC
Q 002407 758 VVSASEDSYVYVWKYEA 774 (927)
Q Consensus 758 Lasgs~Dg~I~IWdl~s 774 (927)
|++|..|.+|++|.-..
T Consensus 424 lit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 424 LITGEADKTIKMYKEDE 440 (460)
T ss_pred EEeccCCcceEEEeccc
Confidence 99999999999998654
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=285.60 Aligned_cols=273 Identities=24% Similarity=0.376 Sum_probs=221.6
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
.--...++|..|++|+.+||.|-.|..|++|.+...+. ..+..... ...+-....+
T Consensus 375 ~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl-~~lk~~~~---------------l~~~d~~sad-------- 430 (707)
T KOG0263|consen 375 HNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKL-KKLKDASD---------------LSNIDTESAD-------- 430 (707)
T ss_pred EEcCCcceeEeecCCcchhhccccccEEEEEecchhhh-ccccchhh---------------hccccccccc--------
Confidence 33445699999999999999999999999999975432 22110000 0000000000
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCce
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYV 610 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V 610 (927)
+. .............++.||.++|..+.|+|+ .+|+++|.|++||+|.+.+..++..+. |..+|
T Consensus 431 -------------~~-~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PV 496 (707)
T KOG0263|consen 431 -------------VD-VDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPV 496 (707)
T ss_pred -------------hh-hhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcce
Confidence 00 001112233445568999999999999999 889999999999999999999999887 99999
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccc
Q 002407 611 TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (927)
Q Consensus 611 ~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i 689 (927)
++++|+| .|-||++++.|++.++|.......+..+ .|-..|.|+.|+|+..|+++|+.|.+|++||+.++..+..+
T Consensus 497 wdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF-- 573 (707)
T KOG0263|consen 497 WDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF-- 573 (707)
T ss_pred eeEEecC-CceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe--
Confidence 9999999 9999999999999999999887777644 55689999999999999999999999999999999988776
Q ss_pred ccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 690 NLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 690 ~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
.+|..+|++++|+|.|. +|++|+.|+.|.|||... ++..+.+| ...|.++.|+.+|..||+|+.|.+|
T Consensus 574 -------~GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 574 -------TGHKGPVTALAFSPCGR-YLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSV 643 (707)
T ss_pred -------cCCCCceEEEEEcCCCc-eEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeE
Confidence 49999999999999887 899999999999999765 44445554 7889999999999999999999999
Q ss_pred EEEECCCCC
Q 002407 768 YVWKYEAES 776 (927)
Q Consensus 768 ~IWdl~s~~ 776 (927)
++||+....
T Consensus 644 ~lWD~~~~~ 652 (707)
T KOG0263|consen 644 RLWDLTKVI 652 (707)
T ss_pred EEEEchhhc
Confidence 999997643
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-27 Score=266.20 Aligned_cols=422 Identities=16% Similarity=0.247 Sum_probs=313.7
Q ss_pred EEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccc
Q 002407 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN 504 (927)
Q Consensus 425 ~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~ 504 (927)
..++..-.|.+||..++++.+.... ..-...|+|+.-+|+.-+||.|-.||.|+||+..+......+ .+|..
T Consensus 37 va~~a~E~vn~WdlRtge~~~~l~~---~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tf-----ngHK~ 108 (888)
T KOG0306|consen 37 VAVSALEQVNIWDLRTGEIEKKLIL---LKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITF-----NGHKA 108 (888)
T ss_pred EEEeccccEeEEeeecchhhhhhhh---hcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeee-----ccccc
Confidence 3444555788999999977655432 223368999999999999999999999999999887655553 78999
Q ss_pred cEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecC-CcEEE
Q 002407 505 MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK-SQHLL 582 (927)
Q Consensus 505 ~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~sp-d~~L~ 582 (927)
.|..+.|...|..+++++.++.+ .+|++ .+.-+..++||.+.|+.+-|.. +..|+
T Consensus 109 AVt~l~fd~~G~rlaSGskDt~I-----------------------IvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lv 165 (888)
T KOG0306|consen 109 AVTTLKFDKIGTRLASGSKDTDI-----------------------IVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLV 165 (888)
T ss_pred ceEEEEEcccCceEeecCCCccE-----------------------EEEEeccceeeEEeecchHHHhHHhccCCCeEEE
Confidence 99999999999999999999887 45555 3456778999999999999998 48999
Q ss_pred EEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC----------------C-----
Q 002407 583 SSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE----------------R----- 640 (927)
Q Consensus 583 Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t----------------~----- 640 (927)
+.+.|+.|++||+.+..|..+.- |...|+.+++.+ +.+++++.|+.+++|++.. |
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rq 242 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQ 242 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeec
Confidence 99999999999999999998775 999999999975 7899999999999999810 0
Q ss_pred --------------cE----------------------------------------------------------------
Q 002407 641 --------------QV---------------------------------------------------------------- 642 (927)
Q Consensus 641 --------------~~---------------------------------------------------------------- 642 (927)
..
T Consensus 243 sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~k 322 (888)
T KOG0306|consen 243 SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAK 322 (888)
T ss_pred cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhh
Confidence 00
Q ss_pred --------------------------------------------EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEEC
Q 002407 643 --------------------------------------------VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNT 678 (927)
Q Consensus 643 --------------------------------------------v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl 678 (927)
+....|...|.+++++.+...+++| ..+.|+||+.
T Consensus 323 iks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~ 401 (888)
T KOG0306|consen 323 IKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNR 401 (888)
T ss_pred eeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEc
Confidence 0001223456777777776555554 4678999999
Q ss_pred CCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC--cceEEEEeecCCcceEEEEEecCCC
Q 002407 679 SENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI--DLVHKFKGFRNTNSQISASLTANGR 756 (927)
Q Consensus 679 ~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~--~~~~~~~~~~~~~~v~sv~fspdg~ 756 (927)
.+.+++.++. ...+.+..|.|.+. ++++|...|.+.+||.. .+..... .|.+.+++++.+||++
T Consensus 402 ~t~kciRTi~-----------~~y~l~~~Fvpgd~-~Iv~G~k~Gel~vfdlaS~~l~Eti~--AHdgaIWsi~~~pD~~ 467 (888)
T KOG0306|consen 402 DTLKCIRTIT-----------CGYILASKFVPGDR-YIVLGTKNGELQVFDLASASLVETIR--AHDGAIWSISLSPDNK 467 (888)
T ss_pred cCcceeEEec-----------cccEEEEEecCCCc-eEEEeccCCceEEEEeehhhhhhhhh--ccccceeeeeecCCCC
Confidence 9999988753 23788999999765 89999999999999954 3444444 4688899999999999
Q ss_pred EEEEEECCCcEEEEECCCCCC-cccc-cccceeee-eeeecCCCeEEEEecCCceeEEeecCCceeeccc--------cC
Q 002407 757 YVVSASEDSYVYVWKYEAESR-PSRS-KSITVTHS-YEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFST--------AN 825 (927)
Q Consensus 757 ~Lasgs~Dg~I~IWdl~s~~~-~~~~-~~~~~~~~-~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~--------~~ 825 (927)
.+++|+.|.+|++|++.-... +... +-....+. ...+..+-..+.++.+|....+..-+..+..+.. ..
T Consensus 468 g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY 547 (888)
T KOG0306|consen 468 GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY 547 (888)
T ss_pred ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec
Confidence 999999999999999864321 2111 11111111 1112222233444555555555555554433322 23
Q ss_pred CCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhcc---ccccCCCceecccCCCCCcccCCC
Q 002407 826 HPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL---TARNRSPRTSLDISNGISSSISAW 902 (927)
Q Consensus 826 ~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~---~~~~~s~v~s~~~~~~~~~a~S~d 902 (927)
+|.+|+. .|..|||+++|++++ .|+.+++|..+-.-. ..+|+..+.. +.|-|.
T Consensus 548 GHkLPV~------------smDIS~DSklivTgS----ADKnVKiWGLdFGDCHKS~fAHdDSvm~--------V~F~P~ 603 (888)
T KOG0306|consen 548 GHKLPVL------------SMDISPDSKLIVTGS----ADKNVKIWGLDFGDCHKSFFAHDDSVMS--------VQFLPK 603 (888)
T ss_pred cccccee------------EEeccCCcCeEEecc----CCCceEEeccccchhhhhhhcccCceeE--------EEEccc
Confidence 5555554 355899999999987 999999999763321 3456665554 578899
Q ss_pred CCEEEEEcCCCcEEEee
Q 002407 903 GMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 903 G~vLvTgs~DG~IrvW~ 919 (927)
.+.+.|+|.||.||-|+
T Consensus 604 ~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 604 THLFFTCGKDGKVKQWD 620 (888)
T ss_pred ceeEEEecCcceEEeec
Confidence 99999999999999995
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=246.74 Aligned_cols=267 Identities=19% Similarity=0.303 Sum_probs=210.8
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecC-CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE--E-EeccCCCcEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHS-DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV--V-DWNDLHEMVTA 654 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~-~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~--v-~~~~~~~~V~s 654 (927)
-+|++++.|.+||+|...+|.|..++.|. ..|+.+...| ++++|++++. ..|++||++++.. + .+..+...|++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITP-DKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcC-CcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence 36899999999999999999999999964 6899999999 9988888875 6799999988643 3 45556689999
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce
Q 002407 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV 734 (927)
Q Consensus 655 la~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~ 734 (927)
+.|..+|+++++|+.||+++|||++...+...+ .+..+|+++..+|+.. .|+++..+|.|+|||+....
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~----------~~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY----------QHNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENS 157 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhc----------cCCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCc
Confidence 999999999999999999999999986555443 5679999999999765 89999999999999976653
Q ss_pred EEE-EeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEee
Q 002407 735 HKF-KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGL 813 (927)
Q Consensus 735 ~~~-~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~ 813 (927)
..- .......++.++...|||.+|+.+...|+.++|++-+.........+. .
T Consensus 158 c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~------k--------------------- 210 (311)
T KOG0315|consen 158 CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVH------K--------------------- 210 (311)
T ss_pred cccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhh------h---------------------
Confidence 332 223456789999999999999999999999999998733222211110 0
Q ss_pred cCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhcc----ccccCCCceec
Q 002407 814 QDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL----TARNRSPRTSL 889 (927)
Q Consensus 814 ~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~----~~~~~s~v~s~ 889 (927)
+...+.+ +..+.||||+++||+.+ .|+++++|..+.+.. +.+|+.-+-
T Consensus 211 -------~~ah~~~---------------il~C~lSPd~k~lat~s----sdktv~iwn~~~~~kle~~l~gh~rWvW-- 262 (311)
T KOG0315|consen 211 -------FQAHNGH---------------ILRCLLSPDVKYLATCS----SDKTVKIWNTDDFFKLELVLTGHQRWVW-- 262 (311)
T ss_pred -------eecccce---------------EEEEEECCCCcEEEeec----CCceEEEEecCCceeeEEEeecCCceEE--
Confidence 1111111 22244899999999987 899999999986611 233432211
Q ss_pred ccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 890 DISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 890 ~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
.++||.||+|||||+.|+++|+|.
T Consensus 263 ------dc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 263 ------DCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred ------eeeeccCccEEEecCCCCceeecc
Confidence 479999999999999999999998
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-29 Score=268.46 Aligned_cols=281 Identities=17% Similarity=0.255 Sum_probs=242.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccc
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~ 535 (927)
+.+|..|.|.|+|+.|++|+..|.+.+|+...... +.....|...|.++.|++++..++++..++.+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-----EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~i-------- 162 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-----ETILQAHDSPVRTMKWSHNGTWMISGDKGGMI-------- 162 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeH-----HHHhhhhcccceeEEEccCCCEEEEcCCCceE--------
Confidence 45799999999999999999999999999743321 12245678999999999999999999999888
Q ss_pred ccccccccCcccccceEeecCCCceEEEccCC-CCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEE
Q 002407 536 INRKSLSLDHMVVPETVFALSDKPICSFQGHL-DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTC 612 (927)
Q Consensus 536 ~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~-~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~ 612 (927)
++|...-..+..+.+|. ..|.+++|+|+ ..+++++.|++|+|||....+....+. |.-.|.+
T Consensus 163 ---------------KyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 163 ---------------KYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred ---------------EecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 55555666666777766 89999999997 889999999999999999887776666 9999999
Q ss_pred EEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccc
Q 002407 613 IQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL 691 (927)
Q Consensus 613 v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~ 691 (927)
++|+| ...+|++++.|..|++||.+++.++. ...|+..|..+.|+|++++|++++.|..|++||+++.+.+..+
T Consensus 228 vdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~---- 302 (464)
T KOG0284|consen 228 VDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY---- 302 (464)
T ss_pred eccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh----
Confidence 99999 88899999999999999999999886 5566789999999999999999999999999999966655554
Q ss_pred ccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-cceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEE
Q 002407 692 QNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVW 770 (927)
Q Consensus 692 ~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IW 770 (927)
++|...|+++.|+|-...+|.+++.||.|..|... +.-.....+.|...|.+++|+|=|.+|++|+.|.++++|
T Consensus 303 -----r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 303 -----RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred -----hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeee
Confidence 58999999999999988899999999999999965 222223345678899999999999999999999999999
Q ss_pred ECCC
Q 002407 771 KYEA 774 (927)
Q Consensus 771 dl~s 774 (927)
.-..
T Consensus 378 ~r~r 381 (464)
T KOG0284|consen 378 TRNR 381 (464)
T ss_pred ccCC
Confidence 7654
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=280.88 Aligned_cols=231 Identities=26% Similarity=0.470 Sum_probs=204.1
Q ss_pred CeEEEccCceEEEEeccCcccccce--------------------------eeeeEeecCCCCEEEEEEcCCCCEEEEEe
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTAL--------------------------YKCQEIQAHNGSIWSIKFSLDGRYLASAG 475 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l--------------------------~~~q~L~gH~~~I~~vafSpdG~~LaSgs 475 (927)
..++.|-.+..|++|....+.+..+ ...++|.||.++|..+.|+|+.++|++++
T Consensus 391 smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScS 470 (707)
T KOG0263|consen 391 SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCS 470 (707)
T ss_pred chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeecc
Confidence 3678899999999998875332211 12356899999999999999999999999
Q ss_pred CCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec
Q 002407 476 EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL 555 (927)
Q Consensus 476 ~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 555 (927)
+|++||+|.+.+..
T Consensus 471 ED~svRLWsl~t~s------------------------------------------------------------------ 484 (707)
T KOG0263|consen 471 EDSSVRLWSLDTWS------------------------------------------------------------------ 484 (707)
T ss_pred CCcceeeeecccce------------------------------------------------------------------
Confidence 99999999986542
Q ss_pred CCCceEEEccCCCCEEEEEecCCc-EEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEE
Q 002407 556 SDKPICSFQGHLDDVLDLSWSKSQ-HLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVR 633 (927)
Q Consensus 556 s~k~i~~l~gH~~~V~~l~~spd~-~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~ 633 (927)
.+..++||..+|+++.|+|-+ +++|++.|++.++|.....+++++|. |-..|.|+.|+| +.+|+++|+.|.+|+
T Consensus 485 ---~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVR 560 (707)
T KOG0263|consen 485 ---CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVR 560 (707)
T ss_pred ---eEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccCCCCceEE
Confidence 233567999999999999985 59999999999999999999999987 999999999999 999999999999999
Q ss_pred EEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC
Q 002407 634 IWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 634 IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
+||+.+|..+.. .+|...|++++|+|+|++|++|+.||.|.|||+.++.++..+ .+|.+.|+++.|+.+|
T Consensus 561 lWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l---------~~Ht~ti~SlsFS~dg 631 (707)
T KOG0263|consen 561 LWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL---------KGHTGTIYSLSFSRDG 631 (707)
T ss_pred EEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh---------hcccCceeEEEEecCC
Confidence 999999998875 466689999999999999999999999999999999888765 4899999999999998
Q ss_pred CcEEEEEECCCcEEEEECCc
Q 002407 713 SSEVLVTSADSRIRVVDGID 732 (927)
Q Consensus 713 ~~~Llsgs~Dg~I~VwD~~~ 732 (927)
. +|++++.|.+|++||..+
T Consensus 632 ~-vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 632 N-VLASGGADNSVRLWDLTK 650 (707)
T ss_pred C-EEEecCCCCeEEEEEchh
Confidence 7 999999999999999543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-28 Score=265.82 Aligned_cols=289 Identities=17% Similarity=0.245 Sum_probs=241.2
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
+.|..|...|.+|.|+|...+++++-..|.|.||+.++...+..+. -...+|..+.|-..-..++++.++..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe-----V~~~PvRa~kfiaRknWiv~GsDD~~I-- 79 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE-----VSEVPVRAAKFIARKNWIVTGSDDMQI-- 79 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeee-----ecccchhhheeeeccceEEEecCCceE--
Confidence 3456699999999999999999999999999999999988777763 233566677777777888888888877
Q ss_pred ecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC-cEEEEEe-
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK-TCLKIFS- 605 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~-~~~~~~~- 605 (927)
.+|.. +...+..|..|.+-|.+|+.+|. .+++|+|.|-+|++||.+.. .|.++|.
T Consensus 80 ---------------------rVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG 138 (794)
T KOG0276|consen 80 ---------------------RVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG 138 (794)
T ss_pred ---------------------EEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC
Confidence 44444 45778899999999999999998 89999999999999999865 6778887
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCC--CEEEEEECCCeEEEEECCCCe
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDG--QGALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg--~~l~tgs~Dg~I~IwDl~~~~ 682 (927)
|+..|.+|+|+|.|.+.|++++.|++|+||.+.+..+.. +..|...|++++|-+-| .+|++|+.|.+|+|||.++..
T Consensus 139 H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~ 218 (794)
T KOG0276|consen 139 HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS 218 (794)
T ss_pred cceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH
Confidence 999999999999999999999999999999998876554 45677899999998844 699999999999999999999
Q ss_pred eeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEE
Q 002407 683 LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSAS 762 (927)
Q Consensus 683 ~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs 762 (927)
+++++ .+|...|..+.|+|.-+ ++++|+.||+++||+..+....-...-....+++++-.+.+..++.|.
T Consensus 219 CV~TL---------eGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 219 CVQTL---------EGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred HHHHh---------hcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence 98876 48999999999999887 899999999999999654433222222356788888888888888888
Q ss_pred CCCcEEEEECCCCCC
Q 002407 763 EDSYVYVWKYEAESR 777 (927)
Q Consensus 763 ~Dg~I~IWdl~s~~~ 777 (927)
+.|.| +..+-.+++
T Consensus 289 Deg~i-~v~lgreeP 302 (794)
T KOG0276|consen 289 DEGSV-TVKLGREEP 302 (794)
T ss_pred cCCcE-EEEccCCCC
Confidence 77755 445555443
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=249.60 Aligned_cols=314 Identities=17% Similarity=0.214 Sum_probs=266.3
Q ss_pred eeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccce
Q 002407 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (927)
Q Consensus 414 ~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~ 493 (927)
+.+.+....++++|..+-+-.+|+..++++. -++.+|+.+|+|+.|+.||.|||||+.+|.|+||++.++.....
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~-----~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~ 143 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFA-----GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWK 143 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCcce-----eEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEE
Confidence 4444446667889999999999999988843 45689999999999999999999999999999999999987776
Q ss_pred eecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCC-CceEEEccCCCCEEE
Q 002407 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLD 572 (927)
Q Consensus 494 l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~~~V~~ 572 (927)
+. .....+.-+.|.|.+..++++..++.+. +|.+.. ...+.+.||..++++
T Consensus 144 ~~-----~e~~dieWl~WHp~a~illAG~~DGsvW-----------------------mw~ip~~~~~kv~~Gh~~~ct~ 195 (399)
T KOG0296|consen 144 LD-----QEVEDIEWLKWHPRAHILLAGSTDGSVW-----------------------MWQIPSQALCKVMSGHNSPCTC 195 (399)
T ss_pred ee-----cccCceEEEEecccccEEEeecCCCcEE-----------------------EEECCCcceeeEecCCCCCccc
Confidence 63 3455677789999999999999998874 444444 567788999999999
Q ss_pred EEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC-
Q 002407 573 LSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL- 648 (927)
Q Consensus 573 l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~- 648 (927)
=.|.|+ ++++++..||+|++||..+++++..+. ......++.++. .+..++.|..++.+++-+..+++++.....
T Consensus 196 G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~ 274 (399)
T KOG0296|consen 196 GEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNGT 274 (399)
T ss_pred ccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc-ccceeEeccCCccEEEEccccceEEEecCCC
Confidence 999999 779999999999999999999998887 445678899998 899999999999999999999988865442
Q ss_pred --------CC---cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEE
Q 002407 649 --------HE---MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (927)
Q Consensus 649 --------~~---~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Ll 717 (927)
.. .|..+.++..=.+.|+|+.||+|.|||+...++.... .|...|+.+.|.+ .. +|+
T Consensus 275 ~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c----------~he~~V~~l~w~~-t~-~l~ 342 (399)
T KOG0296|consen 275 VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC----------EHEDGVTKLKWLN-TD-YLL 342 (399)
T ss_pred CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec----------cCCCceEEEEEcC-cc-hhe
Confidence 22 3444455556678999999999999999887766553 6788899999999 33 899
Q ss_pred EEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 718 VTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 718 sgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
+++.+|.|++||.+....++....|...|..++++|++++++|++.|++.+||++.
T Consensus 343 t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 343 TACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999998888888888888999999999999999999999999999874
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=293.65 Aligned_cols=315 Identities=15% Similarity=0.177 Sum_probs=239.7
Q ss_pred ceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceee--cccccCccccEE
Q 002407 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL--EKQEDGHLNMLL 507 (927)
Q Consensus 430 ~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~--~~~~~~~~~~v~ 507 (927)
.|-+++|+..............+..|.+.|++++|+|+|++||||+.|++|+||++.......... ..........+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 455666766655554444455677899999999999999999999999999999986421110000 000011234566
Q ss_pred EEccCCC-CCeecccccCCceeeecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecC-C-cEEEE
Q 002407 508 LANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSK-S-QHLLS 583 (927)
Q Consensus 508 ~v~~spd-~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~sp-d-~~L~S 583 (927)
.+.|.+. +..+++++.++.+ .+|++. .+.+..+.+|.+.|++++|+| + .+|++
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v-----------------------~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~S 593 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVV-----------------------QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLAS 593 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeE-----------------------EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEE
Confidence 7788764 6788888888877 455543 466778899999999999997 4 68999
Q ss_pred EeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc--EEEeccCCCcEEEEEECCCC
Q 002407 584 SSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--VVDWNDLHEMVTAACYTPDG 661 (927)
Q Consensus 584 gs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~--~v~~~~~~~~V~sla~spdg 661 (927)
|+.|++|++||+.++.++..+.+...|.++.|++.++.+|++|+.|+.|++||+++.+ ......|...|.++.|. ++
T Consensus 594 gs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~ 672 (793)
T PLN00181 594 GSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS 672 (793)
T ss_pred EcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC
Confidence 9999999999999999998888778899999976579999999999999999998765 23456677899999997 78
Q ss_pred CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce--EEEE-
Q 002407 662 QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV--HKFK- 738 (927)
Q Consensus 662 ~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~--~~~~- 738 (927)
.+|++++.|+.|+|||+......... .......+|...+..++|+|++. +|++|+.|+.|++|+..... ..+.
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~---~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINE---TPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCC---cceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCCceEEEec
Confidence 89999999999999999753210000 00111247888999999999876 89999999999999954321 1111
Q ss_pred ----------eecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 739 ----------GFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 739 ----------~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
...+...|.+++|++++.+|++|+.||.|+||++
T Consensus 749 ~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 749 KTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 1223456899999999999999999999999996
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=254.91 Aligned_cols=285 Identities=24% Similarity=0.361 Sum_probs=251.0
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
.+.+.+|..+|+.+.|+|+-..++++++|.+|++||..+++....+ .+|...+..+.+...|.+++++..+-.+.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-----rGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-----RGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-----hccccceeEEEEecCccEEEecCCccchh
Confidence 3567889999999999999999999999999999999999875554 68888899999999999999987776542
Q ss_pred eecccccccccccccCcccccceEeecC--CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALS--DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s--~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~ 605 (927)
+|+.. ...+..+.+|...|.++.|-|. .+|++++.|.+|+.|++.++.++++|.
T Consensus 176 -----------------------LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~ 232 (406)
T KOG0295|consen 176 -----------------------LWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP 232 (406)
T ss_pred -----------------------heeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc
Confidence 33332 2556678899999999999997 889999999999999999999999998
Q ss_pred -cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCC---------------CCEEEEEE
Q 002407 606 -HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPD---------------GQGALVGS 668 (927)
Q Consensus 606 -h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spd---------------g~~l~tgs 668 (927)
|...|..++.+. |+.++++++.|.+|++|-+.++++.. ...|+..|.+++|-|. ++++++++
T Consensus 233 ~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S 311 (406)
T KOG0295|consen 233 GHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS 311 (406)
T ss_pred CchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence 999999999998 99999999999999999999987665 4456678889988653 36899999
Q ss_pred CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEE
Q 002407 669 YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQIS 748 (927)
Q Consensus 669 ~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~s 748 (927)
.|++|++||+.++.++.++ .+|...|..++|+|.|+ +|+++..|+++++||.....+......+...+++
T Consensus 312 rDktIk~wdv~tg~cL~tL---------~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~ 381 (406)
T KOG0295|consen 312 RDKTIKIWDVSTGMCLFTL---------VGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTS 381 (406)
T ss_pred ccceEEEEeccCCeEEEEE---------ecccceeeeeEEcCCCe-EEEEEecCCcEEEEEeccceeeeccCCCcceeEE
Confidence 9999999999999998886 49999999999999887 8999999999999998777666666667788999
Q ss_pred EEEecCCCEEEEEECCCcEEEEEC
Q 002407 749 ASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 749 v~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
+.|+.+..++++|+-|..+++|..
T Consensus 382 lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 382 LDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999975
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-28 Score=239.26 Aligned_cols=250 Identities=25% Similarity=0.477 Sum_probs=219.9
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
.+.|..|+++|..+.|+-||+|.+|+|.|.+|++|+...+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg---------------------------------------- 49 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---------------------------------------- 49 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc----------------------------------------
Confidence 3567889999999999999999999999999999986543
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h 606 (927)
..++++.+|...|.+++.+.| ..|++|+.|+.|.+||+.+|+.++.|. |
T Consensus 50 -----------------------------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH 100 (307)
T KOG0316|consen 50 -----------------------------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGH 100 (307)
T ss_pred -----------------------------ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccc
Confidence 345677899999999999887 789999999999999999999999998 9
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC--cEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--QVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~ 683 (927)
...|+.++|+. +...+++|+.|.++++||.++. ++++.+ ...+.|.++.+. +..|++|+.||+++.||++.+.+
T Consensus 101 ~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l 177 (307)
T KOG0316|consen 101 LAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTL 177 (307)
T ss_pred cceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeeccee
Confidence 99999999998 8999999999999999999875 455544 345788888876 56799999999999999999987
Q ss_pred eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE--CCcceEEEEeecCCcceEEEEEecCCCEEEEE
Q 002407 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGFRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD--~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasg 761 (927)
... ....+|+++.|+++++ ..++++.|++|++.| ..+++..+++|.+...-..++++....++++|
T Consensus 178 ~sD-----------y~g~pit~vs~s~d~n-c~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sg 245 (307)
T KOG0316|consen 178 SSD-----------YFGHPITSVSFSKDGN-CSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSG 245 (307)
T ss_pred ehh-----------hcCCcceeEEecCCCC-EEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEec
Confidence 654 4567899999999987 899999999999999 56788899999998888899999999999999
Q ss_pred ECCCcEEEEECCCCCCccccc
Q 002407 762 SEDSYVYVWKYEAESRPSRSK 782 (927)
Q Consensus 762 s~Dg~I~IWdl~s~~~~~~~~ 782 (927)
++||.|++||+..........
T Consensus 246 SEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 246 SEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred cCCceEEEEEeccceeeeeec
Confidence 999999999999876655443
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-28 Score=256.82 Aligned_cols=291 Identities=25% Similarity=0.406 Sum_probs=245.1
Q ss_pred eeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
+..|.|+.|++.||-+.||++|+||||++.|.+..||++.....
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~------------------------------------ 258 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH------------------------------------ 258 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc------------------------------------
Confidence 34467899999999999999999999999999999999753321
Q ss_pred eeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~ 605 (927)
-+...++.+|..+|..+.|+|| .+|++|+.|..+.+||+.++.+...+.
T Consensus 259 ------------------------------~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~ 308 (519)
T KOG0293|consen 259 ------------------------------FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP 308 (519)
T ss_pred ------------------------------eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc
Confidence 1445678899999999999998 889999999999999999999999998
Q ss_pred cC--CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC-CcEEEEEECCCCCEEEEEECCCeEEEEECCCCe
Q 002407 606 HS--DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 606 h~--~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~-~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~ 682 (927)
+. ..+.+++|.| |+..|++|+.|++|..||++....-.|.... ..|.++++++||+++++.+.|..|++|+..+..
T Consensus 309 ~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~ 387 (519)
T KOG0293|consen 309 SGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV 387 (519)
T ss_pred cCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence 54 8999999999 9999999999999999999887776676665 469999999999999999999999999987654
Q ss_pred eeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC--cceEEEEeecCCcceEEEEEec-CCCEEE
Q 002407 683 LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI--DLVHKFKGFRNTNSQISASLTA-NGRYVV 759 (927)
Q Consensus 683 ~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~--~~~~~~~~~~~~~~v~sv~fsp-dg~~La 759 (927)
.... .....+|++++.+.++. ++++.-.+..|++||.. .++.++.++.....++.-||-- +..+++
T Consensus 388 dr~l----------ise~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fia 456 (519)
T KOG0293|consen 388 DRGL----------ISEEQPITSFSISKDGK-LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIA 456 (519)
T ss_pred hhcc----------ccccCceeEEEEcCCCc-EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEE
Confidence 4322 25567899999999987 78888899999999975 4567788888778888888865 458999
Q ss_pred EEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCe--EEEEecCCceeEEeecC
Q 002407 760 SASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDV--SVAIPWPGVGDTWGLQD 815 (927)
Q Consensus 760 sgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v--~vavs~~g~~~i~~~~d 815 (927)
+|++|+.||||+..++.....+.++.....+..+++.+- .+..+-+|++++|+..+
T Consensus 457 SGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 457 SGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999999999988888887777777777653 33344457777777543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-27 Score=272.89 Aligned_cols=284 Identities=25% Similarity=0.434 Sum_probs=238.7
Q ss_pred eEeecC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc--ccceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 450 QEIQAH-NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE--RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 450 q~L~gH-~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~--~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
+.+.+| ...|.|+.|+++|++|++++.|+.+++|++.... ...+ ..+|...|..++|+|++.+++++..+..
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~-----l~~h~~~v~~~~fs~d~~~l~s~s~D~t 226 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRE-----LSGHTRGVSDVAFSPDGSYLLSGSDDKT 226 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcc-----ccccccceeeeEECCCCcEEEEecCCce
Confidence 344444 8899999999999999999999999999996665 2222 2688899999999999999999999988
Q ss_pred eeeecccccccccccccCcccccceEeec-CC-CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEE
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SD-KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKI 603 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~-k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~ 603 (927)
+ ++|++ .. ..+.++.+|...|++++|+|+ .++++|+.|++|+|||+.+++++..
T Consensus 227 i-----------------------riwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 227 L-----------------------RIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred E-----------------------EEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe
Confidence 8 45555 32 678899999999999999999 6899999999999999999999999
Q ss_pred Ee-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc--EEE-eccCCC--cEEEEEECCCCCEEEEEECCCeEEEEE
Q 002407 604 FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--VVD-WNDLHE--MVTAACYTPDGQGALVGSYKGSCHLYN 677 (927)
Q Consensus 604 ~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~--~v~-~~~~~~--~V~sla~spdg~~l~tgs~Dg~I~IwD 677 (927)
+. |...|++++|++ ++++|++++.|+.|+|||+.++. ++. ...+.. .++.++|+|+++++++++.|+.+++||
T Consensus 284 l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~ 362 (456)
T KOG0266|consen 284 LKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWD 362 (456)
T ss_pred eeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEE
Confidence 98 999999999999 99999999999999999999998 333 333333 589999999999999999999999999
Q ss_pred CCCCeeeeecccccccccccCCCC---CeEEEEEcCCCCcEEEEEECCCcEEEEECCcc--eEEEEeecCCcceEEEEEe
Q 002407 678 TSENKLQQKSPINLQNKKKRSHQR---KITGFQFAPGSSSEVLVTSADSRIRVVDGIDL--VHKFKGFRNTNSQISASLT 752 (927)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~---~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~--~~~~~~~~~~~~v~sv~fs 752 (927)
+..+.....+. .|.. .+.+..+.+.+. ++++++.|+.|++||.... +..+.++. ...+..+.++
T Consensus 363 l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~ 431 (456)
T KOG0266|consen 363 LRSGKSVGTYT---------GHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSH 431 (456)
T ss_pred ccCCcceeeec---------ccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccC
Confidence 99888777653 3443 344445566665 8999999999999997644 34444443 6778899999
Q ss_pred cCCCEEEEEE--CCCcEEEEECC
Q 002407 753 ANGRYVVSAS--EDSYVYVWKYE 773 (927)
Q Consensus 753 pdg~~Lasgs--~Dg~I~IWdl~ 773 (927)
+...++++++ .|+.|++|...
T Consensus 432 ~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 432 PTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCcCeeeecCcCCCceEEEecCC
Confidence 9999999998 78999999864
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=250.87 Aligned_cols=309 Identities=18% Similarity=0.280 Sum_probs=257.0
Q ss_pred eEEEccCceEEEEeccCc------ccccceeeeeEeecC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccc
Q 002407 423 VSFHGQERVRVRQYGKSC------KDLTALYKCQEIQAH----NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG 492 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s------~~l~~l~~~q~L~gH----~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~ 492 (927)
++..|..+..-++|++.. .++. +..+..+-++ +..|++++|+.+|.+||+|+.||.++||+... ..+.
T Consensus 193 llasg~~~s~ari~~l~e~~~~~~~q~~-lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-~l~~ 270 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNIGSTQLV-LRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-NLIS 270 (524)
T ss_pred hhhccCCccceeeeeehhhccccchhhh-hhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCc-hhhh
Confidence 567788888888998764 1111 1111111222 35799999999999999999999999999754 3444
Q ss_pred eeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEE
Q 002407 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVL 571 (927)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~ 571 (927)
.+ ..|..+|+.+.|+..+.+|++++.++.+ .+|+. ++...+.|.-|..+-.
T Consensus 271 tl-----~~HkgPI~slKWnk~G~yilS~~vD~tt-----------------------ilwd~~~g~~~q~f~~~s~~~l 322 (524)
T KOG0273|consen 271 TL-----GQHKGPIFSLKWNKKGTYILSGGVDGTT-----------------------ILWDAHTGTVKQQFEFHSAPAL 322 (524)
T ss_pred hh-----hccCCceEEEEEcCCCCEEEeccCCccE-----------------------EEEeccCceEEEeeeeccCCcc
Confidence 43 6788999999999999999999988877 34433 5566777888988889
Q ss_pred EEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCC
Q 002407 572 DLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLH 649 (927)
Q Consensus 572 ~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~ 649 (927)
++.|-.+..+++++.|+.|+|+.+....++.++. |.+.|.+|.|+| .+.+|++++.|++++||......... +..|.
T Consensus 323 DVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs 401 (524)
T KOG0273|consen 323 DVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS 401 (524)
T ss_pred ceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhc
Confidence 9999988999999999999999999999998887 999999999999 99999999999999999987766554 66677
Q ss_pred CcEEEEEECCCC---------CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 650 EMVTAACYTPDG---------QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 650 ~~V~sla~spdg---------~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
..|..+.|+|.| ..+++++.|++|++||+..+.++..+ ..|+.+|++++|+|++. ++++|+
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f---------~kH~~pVysvafS~~g~-ylAsGs 471 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL---------MKHQEPVYSVAFSPNGR-YLASGS 471 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee---------ccCCCceEEEEecCCCc-EEEecC
Confidence 899999999965 46899999999999999999998885 48999999999999987 899999
Q ss_pred CCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 721 ADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 721 ~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
.||.|.||+.... ..++.......|..++|+.+|.+|..+-.|+.+++-|++
T Consensus 472 ~dg~V~iws~~~~-~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 472 LDGCVHIWSTKTG-KLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCeeEeccccch-heeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999996432 233444456779999999999999999999999999875
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-28 Score=252.47 Aligned_cols=268 Identities=18% Similarity=0.349 Sum_probs=220.0
Q ss_pred eeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccce
Q 002407 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (927)
Q Consensus 414 ~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~ 493 (927)
+-|.......+++|..+.+|++|++.+. ++.+.|.||+|+|.|+.| |.+.|++|+.|.+|+|||+.+++.+.+
T Consensus 200 VYClQYDD~kiVSGlrDnTikiWD~n~~-----~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 200 VYCLQYDDEKIVSGLRDNTIKIWDKNSL-----ECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred eEEEEecchhhhcccccCceEEeccccH-----HHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhH
Confidence 4444555566789999999999997644 445677899999999999 556999999999999999998875544
Q ss_pred eecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEE
Q 002407 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (927)
Q Consensus 494 l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l 573 (927)
+-+|...|..+
T Consensus 273 ---------------------------------------------------------------------lihHceaVLhl 283 (499)
T KOG0281|consen 273 ---------------------------------------------------------------------LIHHCEAVLHL 283 (499)
T ss_pred ---------------------------------------------------------------------HhhhcceeEEE
Confidence 34689999999
Q ss_pred EecCCcEEEEEeCCCcEEEEeCCCCcEEEE---E-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cC
Q 002407 574 SWSKSQHLLSSSMDKTVRLWHLSSKTCLKI---F-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DL 648 (927)
Q Consensus 574 ~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~---~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~ 648 (927)
.|+ ++++++++.|.+|.+||+.....+.. + +|...|+.+.| +.++|++++.|.+|++|++.+++.+..+ .|
T Consensus 284 rf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf---d~kyIVsASgDRTikvW~~st~efvRtl~gH 359 (499)
T KOG0281|consen 284 RFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWSTSTCEFVRTLNGH 359 (499)
T ss_pred EEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc---ccceEEEecCCceEEEEeccceeeehhhhcc
Confidence 996 48999999999999999987653322 2 39999999999 4579999999999999999999998755 45
Q ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 649 ~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
+..|.|+.+ .++++++|+.|.+|++||+..|.++..+ .+|..-|.++.|... .+++|+.||+|+||
T Consensus 360 kRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvL---------eGHEeLvRciRFd~k---rIVSGaYDGkikvW 425 (499)
T KOG0281|consen 360 KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL---------EGHEELVRCIRFDNK---RIVSGAYDGKIKVW 425 (499)
T ss_pred cccceehhc--cCeEEEecCCCceEEEEeccccHHHHHH---------hchHHhhhheeecCc---eeeeccccceEEEE
Confidence 567877766 4899999999999999999999988776 489999999999763 79999999999999
Q ss_pred ECCcce---------EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 729 DGIDLV---------HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 729 D~~~~~---------~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
|..... .......+.+.|..+.| |...|++++.|.+|.|||+.++..
T Consensus 426 dl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 426 DLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 954322 22233456677888887 456799999999999999988643
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-26 Score=259.14 Aligned_cols=275 Identities=24% Similarity=0.396 Sum_probs=228.6
Q ss_pred cCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecc
Q 002407 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (927)
Q Consensus 418 ~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~ 497 (927)
.....++.++-..|.|++|+.+-..+. ..+..|.|+|..|+|+|++.+++|||.|-.|+||+..+.+
T Consensus 18 HP~rPwILtslHsG~IQlWDYRM~tli-----~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr-------- 84 (1202)
T KOG0292|consen 18 HPKRPWILTSLHSGVIQLWDYRMGTLI-----DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR-------- 84 (1202)
T ss_pred CCCCCEEEEeecCceeeeehhhhhhHH-----hhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce--------
Confidence 445567788889999999997655443 4568999999999999999999999999999999986644
Q ss_pred cccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC
Q 002407 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (927)
Q Consensus 498 ~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp 577 (927)
++.++.||.+-|..+.|++
T Consensus 85 -------------------------------------------------------------clftL~GHlDYVRt~~FHh 103 (1202)
T KOG0292|consen 85 -------------------------------------------------------------CLFTLLGHLDYVRTVFFHH 103 (1202)
T ss_pred -------------------------------------------------------------ehhhhccccceeEEeeccC
Confidence 3445678999999999999
Q ss_pred C-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc--------------
Q 002407 578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-------------- 641 (927)
Q Consensus 578 d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~-------------- 641 (927)
. ..|+++|.|.||+||+..+++++.++. |..+|.|.+|+| ...++++++.|.+|+|||+..-+
T Consensus 104 eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~ 182 (1202)
T KOG0292|consen 104 EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMR 182 (1202)
T ss_pred CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhh
Confidence 8 999999999999999999999999998 999999999999 89999999999999999984311
Q ss_pred --------------EE-E-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEE
Q 002407 642 --------------VV-D-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG 705 (927)
Q Consensus 642 --------------~v-~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts 705 (927)
++ . ..+|...|+.++|+|.-..|++|+.|..|++|.+...+....-. .++|.+.|.+
T Consensus 183 ~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDt-------crgH~nnVss 255 (1202)
T KOG0292|consen 183 GQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT-------CRGHYNNVSS 255 (1202)
T ss_pred ccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehh-------hhcccCCcce
Confidence 11 1 23455689999999999999999999999999998766543322 2699999999
Q ss_pred EEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 706 FQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 706 l~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
+.|+|... +|++.+.|++|+|||..+.............-+.++-+|..+++++|- |+-+.||.++...
T Consensus 256 vlfhp~q~-lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleREr 324 (1202)
T KOG0292|consen 256 VLFHPHQD-LILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERER 324 (1202)
T ss_pred EEecCccc-eeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcccC
Confidence 99999755 899999999999999755444433334456678889999999888775 6668899998644
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=259.82 Aligned_cols=291 Identities=23% Similarity=0.335 Sum_probs=235.1
Q ss_pred CCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCC-CcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCc
Q 002407 556 SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSS-KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAK 631 (927)
Q Consensus 556 s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t-~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~ 631 (927)
..+.++++.||+..|+++.|.|. .+|+++++|+.|+||++.. +.++++|. |..+|..++|++ ++..|++++.|+.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRF 281 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeeccee
Confidence 34778899999999999999994 6789999999999999986 88999997 999999999999 9999999999999
Q ss_pred EEEEeCCCCcEEEeccCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 632 VRIWSIPERQVVDWNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 632 I~IWDl~t~~~v~~~~~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
|++||+++|+++..+.....++++.|+|++ +.|++|+.|+.|+.||++++++++++. .|.+.|..+.|.+
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd---------~hLg~i~~i~F~~ 352 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD---------RHLGAILDITFVD 352 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH---------hhhhheeeeEEcc
Confidence 999999999999999999999999999998 889999999999999999999888764 7889999999999
Q ss_pred CCCcEEEEEECCCcEEEEECCcce-EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeee
Q 002407 711 GSSSEVLVTSADSRIRVVDGIDLV-HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHS 789 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~VwD~~~~~-~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~ 789 (927)
++. .+++++.|+.++||+..... .++..........++..+|++++++.-+.|+.|.||.+...-+....+..
T Consensus 353 ~g~-rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f----- 426 (503)
T KOG0282|consen 353 EGR-RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRF----- 426 (503)
T ss_pred CCc-eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhh-----
Confidence 987 89999999999999954322 22333333445668899999999999999999999997664443322111
Q ss_pred eeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCcccc
Q 002407 790 YEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISA 869 (927)
Q Consensus 790 ~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~ 869 (927)
+.+... .....+.|||||++|+++. .++.+-
T Consensus 427 -eGh~va--------------------------------------------Gys~~v~fSpDG~~l~SGd----sdG~v~ 457 (503)
T KOG0282|consen 427 -EGHSVA--------------------------------------------GYSCQVDFSPDGRTLCSGD----SDGKVN 457 (503)
T ss_pred -cceecc--------------------------------------------CceeeEEEcCCCCeEEeec----CCccEE
Confidence 101000 1112245999999999987 778888
Q ss_pred ccCchh--hcc-ccccCCCceecccCCCCCcccCCC-CCEEEEEcCCCcEEEee
Q 002407 870 TWPEEK--LVL-TARNRSPRTSLDISNGISSSISAW-GMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 870 ~W~~e~--l~~-~~~~~s~v~s~~~~~~~~~a~S~d-G~vLvTgs~DG~IrvW~ 919 (927)
+|+-.. +.. ...|..++.. +.|+|- -..+||+|+||.|++|.
T Consensus 458 ~wdwkt~kl~~~lkah~~~ci~--------v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 458 FWDWKTTKLVSKLKAHDQPCIG--------VDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EeechhhhhhhccccCCcceEE--------EEecCCCcceeEecccCceeEecC
Confidence 887653 221 3456555554 456664 35789999999999995
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=227.19 Aligned_cols=276 Identities=21% Similarity=0.282 Sum_probs=216.1
Q ss_pred CeEEEccCceEEEEeccCcccccceeeee-Ee-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQ-EI-QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q-~L-~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
.++++++.+.+|++|+....+ .+.++ .| .+|+..|+.++|+|.|+|||+|+.|.++.||.-..++... ....
T Consensus 28 ~ilAscg~Dk~vriw~~~~~~---s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efec---v~~l 101 (312)
T KOG0645|consen 28 VILASCGTDKAVRIWSTSSGD---SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFEC---VATL 101 (312)
T ss_pred eEEEeecCCceEEEEecCCCC---cEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeE---Eeee
Confidence 357888889999999877421 13333 22 4899999999999999999999999999999876543222 1224
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
.+|.+-|.+++|+++|.+||+++.+..+.++.... .-.-..+..|++|...|..+.|+|.
T Consensus 102 EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de-------------------ddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 102 EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE-------------------DDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC-------------------CCcEEEEeeeccccccccEEEEcCCc
Confidence 68899999999999999999999988775443221 1122566788999999999999998
Q ss_pred cEEEEEeCCCcEEEEeCC---CCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEE
Q 002407 579 QHLLSSSMDKTVRLWHLS---SKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTA 654 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~---t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~s 654 (927)
.+|+++++|.+|++|+-. .-++++++. |+..|.+++|+| .|..|++++.|++|+||-..+. -...+...+..
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~ 238 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYD 238 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeeccC---cchhcccceEe
Confidence 899999999999999876 335777776 888999999999 9999999999999999986522 12234467888
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 655 la~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
+.|. ...|++++.|+.|++|.......... +.+..+....|...|++++|.|....+|++++.||.|++|..
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~--~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESDSPDEPS--WNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecCCCCCch--HHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 9998 45799999999999998764322222 122223335788899999999976779999999999999974
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=234.65 Aligned_cols=309 Identities=18% Similarity=0.254 Sum_probs=249.6
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
++|..|+++|.+++.+|+.+++||||.|....||++.+++...++ .+|...|.++.|+.++.+|+++..++.+..
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-----tgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-----TGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-----cCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 456889999999999999999999999999999999999966664 789999999999999999999999998843
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~ 607 (927)
+... ++.....+......|.-|.|+|. ..|+.|+.||.|.+|.+..+...+++. |.
T Consensus 133 ~~~s----------------------tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~ 190 (399)
T KOG0296|consen 133 FKVS----------------------TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHN 190 (399)
T ss_pred EEcc----------------------cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCC
Confidence 3322 23344455556678888999998 779999999999999999977777776 99
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC--CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL--HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~--~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
.++++=.|.| +|+.++++..||+|++|++.+++++..... +...+++.++..+..++.|..++.+++-+..+++.+.
T Consensus 191 ~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 191 SPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred CCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 9999999999 999999999999999999999988764442 3467888999999999999999999999999988776
Q ss_pred ecccccccccccCCCCCeEEEEEcCCCC--cEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEEC
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPGSS--SEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspdg~--~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~ 763 (927)
...- ........+...+.++.+.|-.. .+.++|+-||+|.|||.......... .+...|+.+.|-+ ..+|++++.
T Consensus 270 ~~n~-~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~ 346 (399)
T KOG0296|consen 270 CNNG-TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACA 346 (399)
T ss_pred ecCC-CCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeecc
Confidence 5431 11111234555566666655432 16788999999999997654443333 3567799999998 789999999
Q ss_pred CCcEEEEECCCCCCcccccccceeee
Q 002407 764 DSYVYVWKYEAESRPSRSKSITVTHS 789 (927)
Q Consensus 764 Dg~I~IWdl~s~~~~~~~~~~~~~~~ 789 (927)
+|.|++||.+++.......++.....
T Consensus 347 ~g~v~~wDaRtG~l~~~y~GH~~~Il 372 (399)
T KOG0296|consen 347 NGKVRQWDARTGQLKFTYTGHQMGIL 372 (399)
T ss_pred CceEEeeeccccceEEEEecCchhee
Confidence 99999999999988777666554443
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=244.75 Aligned_cols=290 Identities=22% Similarity=0.313 Sum_probs=234.2
Q ss_pred eeeccccCCCCCCcccCccccCCceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCC
Q 002407 388 SSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD 467 (927)
Q Consensus 388 ~~~~g~k~~~~~~~~~~~~~~~g~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpd 467 (927)
.++..|.+ ..|..+.+..|+.++++..|...++|-...++.++++ ++|.+|..+|..|.||||
T Consensus 218 qil~~htd----EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~-------------~tlvgh~~~V~yi~wSPD 280 (519)
T KOG0293|consen 218 QILQDHTD----EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLK-------------KTLVGHSQPVSYIMWSPD 280 (519)
T ss_pred hhHhhCCC----cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeee-------------eeeecccCceEEEEECCC
Confidence 34444544 4677778888888888888888777766666665443 678999999999999999
Q ss_pred CCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCccc
Q 002407 468 GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMV 547 (927)
Q Consensus 468 G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 547 (927)
.+||++|+.|..+++||+.++.....+.
T Consensus 281 dryLlaCg~~e~~~lwDv~tgd~~~~y~---------------------------------------------------- 308 (519)
T KOG0293|consen 281 DRYLLACGFDEVLSLWDVDTGDLRHLYP---------------------------------------------------- 308 (519)
T ss_pred CCeEEecCchHheeeccCCcchhhhhcc----------------------------------------------------
Confidence 9999999999999999999887544321
Q ss_pred ccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEE
Q 002407 548 VPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFI 624 (927)
Q Consensus 548 ~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~ 624 (927)
.+|...+.+++|.|| ..+++|+.|++|..||+..... .... ....|.+++..+ ||++++
T Consensus 309 ----------------~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~-Dgk~vl 370 (519)
T KOG0293|consen 309 ----------------SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITY-DGKYVL 370 (519)
T ss_pred ----------------cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcC-CCcEEE
Confidence 124567899999999 5699999999999999986542 2222 446799999999 999999
Q ss_pred EEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCC--CC
Q 002407 625 SGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQ--RK 702 (927)
Q Consensus 625 sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~--~~ 702 (927)
+...|..|++|+..+.........+.+|++++++.+++++++.-.+..+++||+...+++.++. +|. ..
T Consensus 371 ~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~---------Ghkq~~f 441 (519)
T KOG0293|consen 371 LVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF---------GHKQGHF 441 (519)
T ss_pred EEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh---------cccccce
Confidence 9999999999999888777777888999999999999999999999999999999877776653 333 34
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEEEEECC--cceEEEEeecCCcceEEEEEecCC-CEEEEEECCCcEEEEECCCC
Q 002407 703 ITGFQFAPGSSSEVLVTSADSRIRVVDGI--DLVHKFKGFRNTNSQISASLTANG-RYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 703 Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~--~~~~~~~~~~~~~~v~sv~fspdg-~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|..-+|.-.+..++++|++|++|+||+.. +++..+.+| ...|.+++|+|.. .++|+|++||+|+||.....
T Consensus 442 iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH--s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH--SKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCC--cceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 55556766665699999999999999954 455566654 6779999999965 57899999999999987653
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-27 Score=242.41 Aligned_cols=290 Identities=21% Similarity=0.365 Sum_probs=234.9
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
.+.+.-+-|..|||||+||++|+.||.|.||++.+++....+.
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk------------------------------------- 252 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK------------------------------------- 252 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhh-------------------------------------
Confidence 3567788999999999999999999999999999887554431
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCc
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDY 609 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~ 609 (927)
.+....|..|.++|.|+.|+.| ..|++|+.||.|++|.+.+|+|++.|. |+..
T Consensus 253 ------------------------YQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkG 308 (508)
T KOG0275|consen 253 ------------------------YQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKG 308 (508)
T ss_pred ------------------------hhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccC
Confidence 0112244568899999999999 889999999999999999999999997 9999
Q ss_pred eEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecc
Q 002407 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 610 V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~ 688 (927)
|+|+.|+. |+..+++++.|.+++|.-+.+|+++. +.+|...|+.+.|++||.++++++.||+|++|+..+..+..++.
T Consensus 309 vt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk 387 (508)
T KOG0275|consen 309 VTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFK 387 (508)
T ss_pred eeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhcc
Confidence 99999999 99999999999999999999999886 45566799999999999999999999999999999999988765
Q ss_pred cccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ceEEEE-eecCCcceEEEEEecCCCEEEEEECCCc
Q 002407 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-LVHKFK-GFRNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~-~~~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
. .+...+|+.+...|.++..++++...++|+|.+... .+..+. +....+...+++++|.|.++.+.++|+.
T Consensus 388 ~-------~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~v 460 (508)
T KOG0275|consen 388 P-------LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGV 460 (508)
T ss_pred C-------CCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcE
Confidence 3 356778999999999988999999999999999543 344443 3344566778899999999999999999
Q ss_pred EEEEECCCCCCcccccccceeeeeeeecCCCeEEE-EecCCceeEE
Q 002407 767 VYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVA-IPWPGVGDTW 811 (927)
Q Consensus 767 I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~va-vs~~g~~~i~ 811 (927)
+|.|.+.++........+.....-..+|+....+| .+-+|...+|
T Consensus 461 lYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 461 LYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLW 506 (508)
T ss_pred EEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhc
Confidence 99999999876555433333333333444433333 3334444444
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-27 Score=249.89 Aligned_cols=265 Identities=20% Similarity=0.317 Sum_probs=220.4
Q ss_pred EEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCcc
Q 002407 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (927)
Q Consensus 424 ~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~ 503 (927)
+.+|+..|.+.+|+-.+=.+. ..+++|..+|++|.|+++|.+++||+.+|.|++|+..-... ..+ ...+.
T Consensus 111 Lltgs~SGEFtLWNg~~fnFE-----tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~----~ahh~ 180 (464)
T KOG0284|consen 111 LLTGSQSGEFTLWNGTSFNFE-----TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-KII----QAHHA 180 (464)
T ss_pred eEeecccccEEEecCceeeHH-----HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-HHh----hHhhh
Confidence 466777788888875332222 23589999999999999999999999999999999754321 111 23445
Q ss_pred ccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEE
Q 002407 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL 582 (927)
Q Consensus 504 ~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~ 582 (927)
..|..++|+|....++++..++.+.++.. ...++...+.||.-.|.+++|+|. ++|+
T Consensus 181 eaIRdlafSpnDskF~t~SdDg~ikiWdf----------------------~~~kee~vL~GHgwdVksvdWHP~kgLia 238 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDF----------------------RMPKEERVLRGHGWDVKSVDWHPTKGLIA 238 (464)
T ss_pred hhhheeccCCCCceeEEecCCCeEEEEec----------------------cCCchhheeccCCCCcceeccCCccceeE
Confidence 78999999999999999999998843322 234666778999999999999998 9999
Q ss_pred EEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECC-
Q 002407 583 SSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTP- 659 (927)
Q Consensus 583 Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~sp- 659 (927)
+++.|..|++||.+++.|+.++. |...|..+.|+| ++++|++++.|..++++|+++.+-+. ...|+..+++++|+|
T Consensus 239 sgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~ 317 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPL 317 (464)
T ss_pred EccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccc
Confidence 99999999999999999999887 999999999999 88999999999999999999655444 556889999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 660 DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 660 dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
...+|.+|+.||.|..|.+...+.+..+. .+|...|++++|+|-|- +|++|+.|.++++|.-
T Consensus 318 ~~~lftsgg~Dgsvvh~~v~~~~p~~~i~--------~AHd~~iwsl~~hPlGh-il~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 318 NESLFTSGGSDGSVVHWVVGLEEPLGEIP--------PAHDGEIWSLAYHPLGH-ILATGSNDRTVRFWTR 379 (464)
T ss_pred cccceeeccCCCceEEEeccccccccCCC--------cccccceeeeeccccce-eEeecCCCcceeeecc
Confidence 55688899999999999998555544433 58999999999999886 8899999999999973
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=235.90 Aligned_cols=302 Identities=15% Similarity=0.173 Sum_probs=250.8
Q ss_pred eecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCC
Q 002407 553 FALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDA 630 (927)
Q Consensus 553 ~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg 630 (927)
|-..-+..+.+.+|.+.|.|+++.|. ..|++|+.|++|+|||+.+++...++. |-..|..+++++ -..||++++.|+
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk 215 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDK 215 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCC
Confidence 33344667788999999999999997 789999999999999999999998888 999999999999 888999999999
Q ss_pred cEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc
Q 002407 631 KVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 631 ~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
.|+.||+...+++. ..+|-..|.+++.+|.-..|++|+.|.++++||+++...+..+ .+|..+|..+.+.
T Consensus 216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l---------~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL---------SGHTNPVASVMCQ 286 (460)
T ss_pred eeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe---------cCCCCcceeEEee
Confidence 99999999999886 5666689999999999999999999999999999998888775 4899999999999
Q ss_pred CCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeee
Q 002407 710 PGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHS 789 (927)
Q Consensus 710 pdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~ 789 (927)
|-++ .+++++.|++|++||............+...+.+++.+|....+|+++.|. |+-|++..+.......++.....
T Consensus 287 ~~dp-qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iin 364 (460)
T KOG0285|consen 287 PTDP-QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIIN 364 (460)
T ss_pred cCCC-ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceee
Confidence 9877 799999999999999887777777777888999999999999999999875 99999999887777666666677
Q ss_pred eeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCcccc
Q 002407 790 YEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISA 869 (927)
Q Consensus 790 ~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~ 869 (927)
......+++.+...-+|....|.-.++.-........++-.+.. -..+...+|-..|..|.++. .|++|+
T Consensus 365 tl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~s------EagI~as~fDktg~rlit~e----adKtIk 434 (460)
T KOG0285|consen 365 TLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLES------EAGIFASCFDKTGSRLITGE----ADKTIK 434 (460)
T ss_pred eeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCcccc------ccceeEEeecccCceEEecc----CCcceE
Confidence 77778888888887778887777655543333222222222211 12334456788888999977 899999
Q ss_pred ccCchhh
Q 002407 870 TWPEEKL 876 (927)
Q Consensus 870 ~W~~e~l 876 (927)
+|.+...
T Consensus 435 ~~keDe~ 441 (460)
T KOG0285|consen 435 MYKEDEH 441 (460)
T ss_pred EEecccc
Confidence 9987644
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=228.50 Aligned_cols=271 Identities=18% Similarity=0.266 Sum_probs=223.0
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..+++|..+..|.+|+.... .. ..-.+++|.++|..+.|.+|++.|+++|.|.+|+.||+++++...
T Consensus 60 s~~aSgG~Dr~I~LWnv~gd-ce---N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r--------- 126 (338)
T KOG0265|consen 60 SCFASGGSDRAIVLWNVYGD-CE---NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR--------- 126 (338)
T ss_pred CeEeecCCcceEEEEecccc-cc---ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeee---------
Confidence 45678888888888974322 11 223467999999999999999999999999999999998876443
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--c
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--Q 579 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~ 579 (927)
.+++|..-|+.+.-+.- .
T Consensus 127 ------------------------------------------------------------k~k~h~~~vNs~~p~rrg~~ 146 (338)
T KOG0265|consen 127 ------------------------------------------------------------KHKGHTSFVNSLDPSRRGPQ 146 (338)
T ss_pred ------------------------------------------------------------hhccccceeeecCccccCCe
Confidence 44578888888873332 4
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEEC
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYT 658 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~s 658 (927)
++.+++.|++++|||+++..+++++...-+++++.|.. .+..+++|+.|+.|++||++...... ..+|.+.|+.+..+
T Consensus 147 lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls 225 (338)
T KOG0265|consen 147 LVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLS 225 (338)
T ss_pred EEEecCCCceEEEEeecccchhhccccceeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEec
Confidence 68899999999999999999999999899999999998 88899999999999999999888776 45667899999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeee----ecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce
Q 002407 659 PDGQGALVGSYKGSCHLYNTSENKLQQ----KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV 734 (927)
Q Consensus 659 pdg~~l~tgs~Dg~I~IwDl~~~~~~~----~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~ 734 (927)
|+|.++++-+.|.++++||++.....+ .++-. ..........++|+|++. .+-+++.|..+++||.....
T Consensus 226 ~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~-----~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~r~ 299 (338)
T KOG0265|consen 226 RYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH-----IHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTSRR 299 (338)
T ss_pred cCCCccccccccceEEEEEecccCCCCceEEEeecc-----hhhhhhhcceeeccCCCC-ccccccccceEEEeeccccc
Confidence 999999999999999999998644322 22210 112233456778999876 79999999999999987767
Q ss_pred EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 735 HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 735 ~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
..++...+...|.++.|+|...+|.+++.|.+|++=.+
T Consensus 300 ~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 300 ILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred EEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 77777778999999999999999999999999997543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=228.89 Aligned_cols=265 Identities=24% Similarity=0.445 Sum_probs=221.9
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
..+++++..++.|.+|+...++ ....+.+|...|..+.|+|++++|++++.||.|++|++.+++....+ .
T Consensus 21 ~~~l~~~~~~g~i~i~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~-----~ 90 (289)
T cd00200 21 GKLLATGSGDGTIKVWDLETGE-----LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL-----T 90 (289)
T ss_pred CCEEEEeecCcEEEEEEeeCCC-----cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE-----e
Confidence 4567778889999999987654 23556789999999999999999999999999999999987655554 2
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecCC-
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~spd- 578 (927)
.+...+.++.+.+++.+++++..++.+ .+|++. .+.+..+..|...|.++.|+|+
T Consensus 91 ~~~~~i~~~~~~~~~~~~~~~~~~~~i-----------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 147 (289)
T cd00200 91 GHTSYVSSVAFSPDGRILSSSSRDKTI-----------------------KVWDVETGKCLTTLRGHTDWVNSVAFSPDG 147 (289)
T ss_pred ccCCcEEEEEEcCCCCEEEEecCCCeE-----------------------EEEECCCcEEEEEeccCCCcEEEEEEcCcC
Confidence 445578889999998888887656665 344443 5667777889999999999997
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAAC 656 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla 656 (927)
.++++++.|+.|++||+.+++.+..+. |...|.++.|+| +++.|++++.++.|++||+..++.+... .+...+.+++
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 226 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA 226 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEE
Confidence 556666669999999999888888776 777999999999 8888999999999999999988887766 6677999999
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 657 YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 657 ~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
|+|++.++++++.++.|++|++.+++....+. .|...|.+++|+|++. .|++++.|+.|++|+
T Consensus 227 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iw~ 289 (289)
T cd00200 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLS---------GHTNSVTSLAWSPDGK-RLASGSADGTIRIWD 289 (289)
T ss_pred EcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc---------ccCCcEEEEEECCCCC-EEEEecCCCeEEecC
Confidence 99998888888889999999999877666542 6777899999999876 899999999999996
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=224.75 Aligned_cols=277 Identities=21% Similarity=0.301 Sum_probs=237.5
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
+++++|...|.+|+|+.+|.+||+|+.|++++||++.......+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~------------------------------------ 57 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE------------------------------------ 57 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh------------------------------------
Confidence 66789999999999999999999999999999999875532211
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEecC
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSHS 607 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~ 607 (927)
....+|.+.|-.++|+|. ..|++++.|++|++||++.++++..+...
T Consensus 58 -------------------------------~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~ 106 (313)
T KOG1407|consen 58 -------------------------------LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK 106 (313)
T ss_pred -------------------------------hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc
Confidence 134689999999999986 78999999999999999999999998877
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
..-.-+.|+| ++.+++.+..|..|.+.|.++.+++........+..++|+-++.+++.....|.|.|.....-+.+..+
T Consensus 107 ~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si 185 (313)
T KOG1407|consen 107 GENINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSI 185 (313)
T ss_pred CcceEEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccccc
Confidence 7777899999 999999999999999999999999988888889999999988888888888899999988876666654
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
+.|.....|+.|+|+|+ ++++|+.|..+.+||..+++..-......-+|..++|+.||++||+|++|..|
T Consensus 186 ---------~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 186 ---------KAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFI 255 (313)
T ss_pred ---------ccCCcceEEEEECCCCc-eEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceE
Confidence 48999999999999998 89999999999999998887776666778899999999999999999999999
Q ss_pred EEEECCCCCCcccccccceeeeeeeecCCCeEEEEecC
Q 002407 768 YVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWP 805 (927)
Q Consensus 768 ~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~ 805 (927)
-|=+++++.+....+.. .......+|++...+|...+
T Consensus 256 DIA~vetGd~~~eI~~~-~~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 256 DIAEVETGDRVWEIPCE-GPTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred EeEecccCCeEEEeecc-CCceeEEecCCCceeeEEec
Confidence 99999998876554322 12233566776666666544
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=269.82 Aligned_cols=270 Identities=17% Similarity=0.276 Sum_probs=212.8
Q ss_pred CCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecC
Q 002407 477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS 556 (927)
Q Consensus 477 DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s 556 (927)
+|.+++|+.........+.......+...|.+++|++++.++++++.++.+..+......... . ..
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~----~----------~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG----R----------DI 522 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc----c----------cc
Confidence 778999998876654444333445678889999999999999999999988665432110000 0 00
Q ss_pred CCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEE
Q 002407 557 DKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVR 633 (927)
Q Consensus 557 ~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~ 633 (927)
..++..+. +...|.+++|++. .+|++++.|++|+|||+.+++.+..+. |...|++++|+|.++.+|++|+.|+.|+
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~ 601 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVK 601 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEE
Confidence 01223333 3467999999874 789999999999999999998888876 9999999999976789999999999999
Q ss_pred EEeCCCCcEEEeccCCCcEEEEEEC-CCCCEEEEEECCCeEEEEECCCCee-eeecccccccccccCCCCCeEEEEEcCC
Q 002407 634 IWSIPERQVVDWNDLHEMVTAACYT-PDGQGALVGSYKGSCHLYNTSENKL-QQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 634 IWDl~t~~~v~~~~~~~~V~sla~s-pdg~~l~tgs~Dg~I~IwDl~~~~~-~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
+||+.++..+..+..+..+.++.|+ +++.+|++|+.||.|++||+++... ... ..+|...|+++.|.+
T Consensus 602 iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~---------~~~h~~~V~~v~f~~- 671 (793)
T PLN00181 602 LWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT---------MIGHSKTVSYVRFVD- 671 (793)
T ss_pred EEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE---------ecCCCCCEEEEEEeC-
Confidence 9999998888777777789999995 5799999999999999999987642 222 147889999999974
Q ss_pred CCcEEEEEECCCcEEEEECCc--------ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 712 SSSEVLVTSADSRIRVVDGID--------LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD~~~--------~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+. .|++++.|++|+|||... .+..+.+ +...+..++|++++.+|++|+.|+.|+||+...
T Consensus 672 ~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g--h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 672 SS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMG--HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred CC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcC--CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 44 799999999999999652 3344444 456678899999999999999999999999764
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=235.00 Aligned_cols=277 Identities=17% Similarity=0.274 Sum_probs=228.8
Q ss_pred cCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEecCcCccccee
Q 002407 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG---RYLASAGEDCVIHVWQVVESERKGEL 494 (927)
Q Consensus 418 ~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG---~~LaSgs~DgtVrVWdv~~~~~~~~l 494 (927)
......+++|..++.+++|+..-+. .+.+.||.++|..++|---. ..|+++|.|.++++|.++.++.+...
T Consensus 112 ~~~~~~IltgsYDg~~riWd~~Gk~------~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~ 185 (423)
T KOG0313|consen 112 KGASKWILTGSYDGTSRIWDLKGKS------IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKA 185 (423)
T ss_pred cccCceEEEeecCCeeEEEecCCce------EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhH
Confidence 3446778999999999999976543 35678999999988885432 36999999999999998776533221
Q ss_pred ecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEE
Q 002407 495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS 574 (927)
Q Consensus 495 ~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~ 574 (927)
+..-.||...|-++.
T Consensus 186 -----------------------------------------------------------------~~~~~GHk~~V~sVs 200 (423)
T KOG0313|consen 186 -----------------------------------------------------------------LKVCRGHKRSVDSVS 200 (423)
T ss_pred -----------------------------------------------------------------HhHhcccccceeEEE
Confidence 112238999999999
Q ss_pred ecCC-cEEEEEeCCCcEEEEeCCC-------------------------CcEEEEEe-cCCceEEEEEccCCCCEEEEEE
Q 002407 575 WSKS-QHLLSSSMDKTVRLWHLSS-------------------------KTCLKIFS-HSDYVTCIQFNPVDDRYFISGS 627 (927)
Q Consensus 575 ~spd-~~L~Sgs~DgtV~lWDl~t-------------------------~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs 627 (927)
..++ .++++|+.|.+|+||+..+ +.++.++. |..+|.++.|++ ...+++++
T Consensus 201 v~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~S 278 (423)
T KOG0313|consen 201 VDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVS 278 (423)
T ss_pred ecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeec
Confidence 9888 7899999999999999321 22333444 999999999986 66899999
Q ss_pred CCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE
Q 002407 628 LDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 628 ~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
.|.+|+.||+.++..+........++++.++|..++|++|+.|..|++||.+++.-.... ..+.+|.+.|.++.
T Consensus 279 wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~------~s~~gH~nwVssvk 352 (423)
T KOG0313|consen 279 WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVS------QSLIGHKNWVSSVK 352 (423)
T ss_pred ccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeE------Eeeecchhhhhhee
Confidence 999999999999999999999999999999999999999999999999999986422111 12359999999999
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCcce-EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 708 FAPGSSSEVLVTSADSRIRVVDGIDLV-HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 708 fspdg~~~Llsgs~Dg~I~VwD~~~~~-~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
|+|...++|++++.|+++++||.+... ..+....|...|.++.|.. +.+|++|+.|.+|+|+.-..
T Consensus 353 wsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 353 WSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred cCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEecccc
Confidence 999999999999999999999988765 6667777888899999974 56999999999999997643
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=220.48 Aligned_cols=232 Identities=21% Similarity=0.360 Sum_probs=199.0
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeec
Q 002407 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~ 531 (927)
|+||+.+|+.|+|+.+|.+|+|++.|.++-||-..+++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe------------------------------------------ 43 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE------------------------------------------ 43 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCc------------------------------------------
Confidence 58999999999999999999999999999999765554
Q ss_pred ccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCce
Q 002407 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYV 610 (927)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V 610 (927)
.+-++.||.+.|+|+....+ .+|+||+.|.+++|||+.+|+++..+....+|
T Consensus 44 ---------------------------rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~V 96 (327)
T KOG0643|consen 44 ---------------------------RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPV 96 (327)
T ss_pred ---------------------------eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCee
Confidence 34466799999999999887 88999999999999999999999999999999
Q ss_pred EEEEEccCCCCEEEEEECC-----CcEEEEeCCC-------Cc-EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEE
Q 002407 611 TCIQFNPVDDRYFISGSLD-----AKVRIWSIPE-------RQ-VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYN 677 (927)
Q Consensus 611 ~~v~fsp~dg~~L~sgs~D-----g~I~IWDl~t-------~~-~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwD 677 (927)
..+.|++ ++++++....+ +.|.++|++. .+ ......+...++.+.|.|-+++|++|..+|.|.+||
T Consensus 97 k~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~d 175 (327)
T KOG0643|consen 97 KRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYD 175 (327)
T ss_pred EEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEE
Confidence 9999999 88887776543 5699999973 33 445666678999999999999999999999999999
Q ss_pred CCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCE
Q 002407 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRY 757 (927)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~ 757 (927)
+++++...... ..|...|+.++++++.. ++++++.|.+-++||...+.. ++.+....++.+++++|...+
T Consensus 176 a~~g~~~v~s~--------~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~tl~v-~Kty~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 176 ARTGKELVDSD--------EEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVRTLEV-LKTYTTERPVNTAAISPLLDH 245 (327)
T ss_pred cccCceeeech--------hhhccccccccccCCcc-eEEecccCccceeeeccceee-EEEeeecccccceecccccce
Confidence 99986554432 47888999999999876 899999999999999765443 344556788999999999888
Q ss_pred EEEEEC
Q 002407 758 VVSASE 763 (927)
Q Consensus 758 Lasgs~ 763 (927)
++.|+.
T Consensus 246 VilgGG 251 (327)
T KOG0643|consen 246 VILGGG 251 (327)
T ss_pred EEecCC
Confidence 888764
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=234.49 Aligned_cols=265 Identities=20% Similarity=0.342 Sum_probs=231.1
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCc
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~ 502 (927)
+.+..+.+.+|++|+..++++. ..|+||+++|..|+|+..|++||+++.|-.+++||..+...... ...+|
T Consensus 122 ~v~~as~d~tikv~D~~tg~~e-----~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k----s~~gh 192 (406)
T KOG0295|consen 122 LVVSASEDATIKVFDTETGELE-----RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK----SLIGH 192 (406)
T ss_pred EEEEecCCceEEEEEccchhhh-----hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH----HhcCc
Confidence 3567778999999999999884 56699999999999999999999999999999999987432222 24678
Q ss_pred cccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCCc-E
Q 002407 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQ-H 580 (927)
Q Consensus 503 ~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd~-~ 580 (927)
...|.++.+-|.+..++++..+..+.. |.. .+-++.+|.+|...|..+..+.|+ .
T Consensus 193 ~h~vS~V~f~P~gd~ilS~srD~tik~-----------------------We~~tg~cv~t~~~h~ewvr~v~v~~DGti 249 (406)
T KOG0295|consen 193 EHGVSSVFFLPLGDHILSCSRDNTIKA-----------------------WECDTGYCVKTFPGHSEWVRMVRVNQDGTI 249 (406)
T ss_pred ccceeeEEEEecCCeeeecccccceeE-----------------------EecccceeEEeccCchHhEEEEEecCCeeE
Confidence 889999999999999999988887733 333 456788999999999999999994 5
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccC--------------CCCEEEEEECCCcEEEEeCCCCcEEE-
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPV--------------DDRYFISGSLDAKVRIWSIPERQVVD- 644 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~--------------dg~~L~sgs~Dg~I~IWDl~t~~~v~- 644 (927)
+++++.|.+|++|-+.+++|...+. |..+|.|++|.|. .+.++.+++.|++|++||+.++.++.
T Consensus 250 ~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred EEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 7899999999999999999988887 9999999999773 13589999999999999999999876
Q ss_pred eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 645 WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
+..|...|..++|+|.|+||+++..|+++++||+++.++..... .|..-++++.|+.+.+ ++++|+-|.+
T Consensus 330 L~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~---------ah~hfvt~lDfh~~~p-~VvTGsVdqt 399 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE---------AHEHFVTSLDFHKTAP-YVVTGSVDQT 399 (406)
T ss_pred EecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC---------CCcceeEEEecCCCCc-eEEeccccce
Confidence 55677899999999999999999999999999999999887753 7889999999999877 8999999999
Q ss_pred EEEEE
Q 002407 725 IRVVD 729 (927)
Q Consensus 725 I~VwD 729 (927)
+++|.
T Consensus 400 ~KvwE 404 (406)
T KOG0295|consen 400 VKVWE 404 (406)
T ss_pred eeeee
Confidence 99996
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=242.32 Aligned_cols=307 Identities=15% Similarity=0.205 Sum_probs=228.2
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
..|++|+..|.++++.|.|-.|+|||.|-+|++||+..................+.+..+.|++.+..+.+.........
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 35689999999999999999999999999999999986543333233334556678889999998776665544444333
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCC-cEEEEEe-
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK-TCLKIFS- 605 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~-~~~~~~~- 605 (927)
..+...........+..+ .-+...+||...++|.+|+|. +.++|++.|+++||||+... +.+++|.
T Consensus 241 ~DRdG~~~~e~~KGDQYI----------~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYI----------RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred EccCCceeeeeeccchhh----------hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee
Confidence 322221111111111111 223456799999999999997 77999999999999999754 4455554
Q ss_pred -----cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE---EE-eccCC--CcEEEEEECCCCCEEEEEECCCeEE
Q 002407 606 -----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV---VD-WNDLH--EMVTAACYTPDGQGALVGSYKGSCH 674 (927)
Q Consensus 606 -----h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~---v~-~~~~~--~~V~sla~spdg~~l~tgs~Dg~I~ 674 (927)
..-+++.++|+| ++++|++|+.||.|.+|+.....+ .. ...|. ..|++|.|++||++|++-+.|++++
T Consensus 311 k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred ccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 334789999999 999999999999999999855322 11 22333 3899999999999999999999999
Q ss_pred EEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE------CCCcEEEEECCcceEEEEeecCCcceEE
Q 002407 675 LYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS------ADSRIRVVDGIDLVHKFKGFRNTNSQIS 748 (927)
Q Consensus 675 IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs------~Dg~I~VwD~~~~~~~~~~~~~~~~v~s 748 (927)
+||++..+........ .....+-+.++|+|+.. +|++|. ..+.+.+||..++...++..-....|..
T Consensus 390 vWDLrq~kkpL~~~tg------L~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~ 462 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTG------LPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVR 462 (641)
T ss_pred eeeccccccchhhhcC------CCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEE
Confidence 9999986543322211 23445678899999876 777764 3478999998888777777777888999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCC
Q 002407 749 ASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 749 v~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+.|+|.=+.|+.++.||+++||-=.+
T Consensus 463 ~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 463 CLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred EeecchhhheeeecCCCceEEEECcc
Confidence 99999988899999999999875444
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=251.27 Aligned_cols=287 Identities=23% Similarity=0.352 Sum_probs=226.6
Q ss_pred eEEEccC-CCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc--EEEEE-ecCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 560 ICSFQGH-LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT--CLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 560 i~~l~gH-~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~--~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
...+.+| ...|.++.|+++ ..|++++.|+.+++|++.... .++.+ .|...|.+++|+| ++.++++++.|++|+|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-CCcEEEEecCCceEEE
Confidence 3444444 788999999999 678999999999999997777 55554 4999999999999 9999999999999999
Q ss_pred EeC-CCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC
Q 002407 635 WSI-PERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 635 WDl-~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
||+ ..+..+. +..|...|++++|+|+|+.+++|+.|++|+|||++++++...+ ..|...|++++|.+++
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l---------~~hs~~is~~~f~~d~ 300 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL---------KGHSDGISGLAFSPDG 300 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee---------eccCCceEEEEECCCC
Confidence 999 4445554 5578899999999999999999999999999999998888776 4899999999999998
Q ss_pred CcEEEEEECCCcEEEEECCcce----EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceee
Q 002407 713 SSEVLVTSADSRIRVVDGIDLV----HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTH 788 (927)
Q Consensus 713 ~~~Llsgs~Dg~I~VwD~~~~~----~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~ 788 (927)
. +|++++.|+.|+|||..... ..+.......++..++|+|++.+|++++.|+.+++|++..+..+.....+...
T Consensus 301 ~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~- 378 (456)
T KOG0266|consen 301 N-LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL- 378 (456)
T ss_pred C-EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc-
Confidence 7 78888999999999976555 23333333226899999999999999999999999999987655443222111
Q ss_pred eeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccc
Q 002407 789 SYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRIS 868 (927)
Q Consensus 789 ~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v 868 (927)
+.. .....+++.+.++.+++ .|..+
T Consensus 379 ---------~~~------------------------------------------~~~~~~~~~~~~i~sg~----~d~~v 403 (456)
T KOG0266|consen 379 ---------VRC------------------------------------------IFSPTLSTGGKLIYSGS----EDGSV 403 (456)
T ss_pred ---------cee------------------------------------------EecccccCCCCeEEEEe----CCceE
Confidence 000 00011467788888876 88999
Q ss_pred cccCchhhc---ccccc-CCCceecccCCCCCcccCCCCCEEEEEc--CCCcEEEeecC
Q 002407 869 ATWPEEKLV---LTARN-RSPRTSLDISNGISSSISAWGMVIVTAG--LRGEIRAYQNF 921 (927)
Q Consensus 869 ~~W~~e~l~---~~~~~-~s~v~s~~~~~~~~~a~S~dG~vLvTgs--~DG~IrvW~~~ 921 (927)
.+|+..... ...+| ...+. .++++|...++++++ .|+.|++|..-
T Consensus 404 ~~~~~~s~~~~~~l~~h~~~~~~--------~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 404 YVWDSSSGGILQRLEGHSKAAVS--------DLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEEeCCccchhhhhcCCCCCcee--------ccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999877332 23445 22222 368899999999999 68999999853
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-25 Score=221.84 Aligned_cols=287 Identities=18% Similarity=0.249 Sum_probs=237.7
Q ss_pred eEeecCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 450 QEIQAHNGSIWSIKFSL---DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 450 q~L~gH~~~I~~vafSp---dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
++..||+.+|..++||| +|-+|++++.|+.-.+-+-+++..+.++ .+|...|+......+....+++..+-.
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-----eghkgavw~~~l~~na~~aasaaadft 82 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-----EGHKGAVWSATLNKNATRAASAAADFT 82 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-----eccCcceeeeecCchhhhhhhhcccch
Confidence 34589999999999986 8889999999999988888888888876 688888988888887776666544432
Q ss_pred eeeecccccccccccccCcccccceEe-ecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc-EEEE
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVF-ALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT-CLKI 603 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~-~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~-~~~~ 603 (927)
- ++| .+++..++.|. |..-|..++|+.| ++|++|+.++.+||||++..+ +...
T Consensus 83 a-----------------------kvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E 138 (334)
T KOG0278|consen 83 A-----------------------KVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKE 138 (334)
T ss_pred h-----------------------hhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchh
Confidence 2 222 33556666665 8889999999998 899999999999999998754 3344
Q ss_pred Ee-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCe
Q 002407 604 FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 604 ~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~ 682 (927)
+. |+..|..+.|.. .++.|++...|++||+||.+++..++.+..+..|+++.++++|.+|.++ ..+.|.+||..+..
T Consensus 139 ~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 139 ISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFG 216 (334)
T ss_pred hcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEecccccc
Confidence 44 999999999998 8888999999999999999999999999999999999999999877665 46789999999988
Q ss_pred eeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEE-eecCCcceEEEEEecCCCEEEEE
Q 002407 683 LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFK-GFRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 683 ~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~-~~~~~~~v~sv~fspdg~~Lasg 761 (927)
++..+. ....|.+..++|+.. .+++|+.|..++.||..+....-. ...+.++|.++.|+|+|...++|
T Consensus 217 ~lKs~k----------~P~nV~SASL~P~k~-~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 217 LLKSYK----------MPCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASG 285 (334)
T ss_pred ceeecc----------CccccccccccCCCc-eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeecc
Confidence 877653 446788999999874 899999999999999554333322 34568899999999999999999
Q ss_pred ECCCcEEEEECCCCCCc
Q 002407 762 SEDSYVYVWKYEAESRP 778 (927)
Q Consensus 762 s~Dg~I~IWdl~s~~~~ 778 (927)
++||+|+||....++..
T Consensus 286 SEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 286 SEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCCceEEEEEecCCCch
Confidence 99999999998776543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-23 Score=215.48 Aligned_cols=290 Identities=21% Similarity=0.355 Sum_probs=216.7
Q ss_pred eeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCC
Q 002407 446 LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (927)
Q Consensus 446 l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~ 525 (927)
+...+.+..-.+.|.+|.|+++|.+|++++.|.+|+|||..+++....+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti------------------------------- 52 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI------------------------------- 52 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-------------------------------
Confidence 3344555667889999999999999999999999999999887655543
Q ss_pred ceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeC--CCcEEEEeCCCCcEEE
Q 002407 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM--DKTVRLWHLSSKTCLK 602 (927)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~--DgtV~lWDl~t~~~~~ 602 (927)
..+.-.|..+.|... ..++.++. |.+||..++.+.+.++
T Consensus 53 --------------------------------------~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylR 94 (311)
T KOG1446|consen 53 --------------------------------------NSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLR 94 (311)
T ss_pred --------------------------------------ecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEE
Confidence 122233444555433 55555555 8999999999999999
Q ss_pred EEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCC
Q 002407 603 IFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 603 ~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~ 681 (927)
.|. |...|+.|..+| -++.+++++.|++|++||++..++...+..... ..++|.|.|-++|++.....|++||++..
T Consensus 95 YF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~IkLyD~Rs~ 172 (311)
T KOG1446|consen 95 YFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELIKLYDLRSF 172 (311)
T ss_pred EcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeEEEEEeccc
Confidence 998 999999999999 668999999999999999998777665544432 35789999999999998889999999875
Q ss_pred eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC--CcceEEEEeecCCcce-EEEEEecCCCEE
Q 002407 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFKGFRNTNSQ-ISASLTANGRYV 758 (927)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~--~~~~~~~~~~~~~~~v-~sv~fspdg~~L 758 (927)
..-....+.+. .......+.+.|+|+|+ .|+.+...+.+++.|. +..+..+..+.....+ ..++|+||++++
T Consensus 173 dkgPF~tf~i~----~~~~~ew~~l~FS~dGK-~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fv 247 (311)
T KOG1446|consen 173 DKGPFTTFSIT----DNDEAEWTDLEFSPDGK-SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFV 247 (311)
T ss_pred CCCCceeEccC----CCCccceeeeEEcCCCC-EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEE
Confidence 32221111111 24567789999999998 7888889999999994 4466667666554422 578999999999
Q ss_pred EEEECCCcEEEEECCCCCCccccccc-ceeeeeeeecCCCeEEEEecCCceeEEe
Q 002407 759 VSASEDSYVYVWKYEAESRPSRSKSI-TVTHSYEHFHCQDVSVAIPWPGVGDTWG 812 (927)
Q Consensus 759 asgs~Dg~I~IWdl~s~~~~~~~~~~-~~~~~~~~~~~~~v~vavs~~g~~~i~~ 812 (927)
++|+.||+|++|+++++.+....++. .....+..|.+.-.. .++.+.....|.
T Consensus 248 l~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~m-f~sa~s~l~fw~ 301 (311)
T KOG1446|consen 248 LSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAM-FVSASSNLVFWL 301 (311)
T ss_pred EEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceee-eeecCceEEEEe
Confidence 99999999999999998877666552 344455556554322 333333334443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-23 Score=227.83 Aligned_cols=339 Identities=15% Similarity=0.225 Sum_probs=259.0
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
...++..+-..|.|.+|+.++..+. +.+.--.-+|++.+|-+.-+++++|+.|..|+||+..+.+++..+
T Consensus 24 tePw~la~LynG~V~IWnyetqtmV-----ksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F----- 93 (794)
T KOG0276|consen 24 TEPWILAALYNGDVQIWNYETQTMV-----KSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF----- 93 (794)
T ss_pred CCceEEEeeecCeeEEEecccceee-----eeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe-----
Confidence 3456678888999999998776655 445667789999999999999999999999999999999998886
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
..|...+.+++..|...++.+++++..+..+.. ...-.+.++|.||..-|.+++|.|.
T Consensus 94 eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~w---------------------e~~wa~~qtfeGH~HyVMqv~fnPkD 152 (794)
T KOG0276|consen 94 EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDW---------------------ENEWACEQTFEGHEHYVMQVAFNPKD 152 (794)
T ss_pred eccccceeeeeecCCCCeEEecCCccEEEEeec---------------------cCceeeeeEEcCcceEEEEEEecCCC
Confidence 578889999999999999999988887743322 1223577899999999999999996
Q ss_pred -cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccC-CCCEEEEEECCCcEEEEeCCCCcEEEecc-CCCcEEE
Q 002407 579 -QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPV-DDRYFISGSLDAKVRIWSIPERQVVDWND-LHEMVTA 654 (927)
Q Consensus 579 -~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~-dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-~~~~V~s 654 (927)
+.+++++-|++|+||.+.+..+..++. |...|+|+.|-+. +..+|++|+.|.+|+|||..+..+++.+. |...|..
T Consensus 153 ~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~ 232 (794)
T KOG0276|consen 153 PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSF 232 (794)
T ss_pred ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceE
Confidence 889999999999999999999998887 9999999999872 23599999999999999999999998665 6689999
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce
Q 002407 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV 734 (927)
Q Consensus 655 la~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~ 734 (927)
++|+|.=..+++|+.||+++||+..+-++...+. ....+|.|++-.+.+. .+++|...|.|.|== .
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn---------~gleRvW~I~~~k~~~-~i~vG~Deg~i~v~l-g--- 298 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN---------YGLERVWCIAAHKGDG-KIAVGFDEGSVTVKL-G--- 298 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcceehhhhhh---------cCCceEEEEeecCCCC-eEEEeccCCcEEEEc-c---
Confidence 9999999999999999999999998887776653 4567899999988765 688888777776521 1
Q ss_pred EEEEeecCCcceEEEEEecCCCEEEEEECC-CcEEEE------ECCCCCCcc-cccc---cceeeeeeeecCCCeEEEEe
Q 002407 735 HKFKGFRNTNSQISASLTANGRYVVSASED-SYVYVW------KYEAESRPS-RSKS---ITVTHSYEHFHCQDVSVAIP 803 (927)
Q Consensus 735 ~~~~~~~~~~~v~sv~fspdg~~Lasgs~D-g~I~IW------dl~s~~~~~-~~~~---~~~~~~~~~~~~~~v~vavs 803 (927)
.. ...+..++.|+.+-+.... ..+.+- ++..++++. ..+. .........+++++-.+++.
T Consensus 299 -------re--eP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vc 369 (794)
T KOG0276|consen 299 -------RE--EPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVC 369 (794)
T ss_pred -------CC--CCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEe
Confidence 11 1223444555544443211 112222 333333221 1111 22222334456778888888
Q ss_pred cCCceeEEe
Q 002407 804 WPGVGDTWG 812 (927)
Q Consensus 804 ~~g~~~i~~ 812 (927)
-+|...+++
T Consensus 370 gdGEyiIyT 378 (794)
T KOG0276|consen 370 GDGEYIIYT 378 (794)
T ss_pred cCccEEEEE
Confidence 888877765
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-25 Score=228.81 Aligned_cols=270 Identities=19% Similarity=0.333 Sum_probs=209.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~ 534 (927)
....|.|+.+. ...+++|..|++|+|||..+-.+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c-------------------------------------------- 229 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLEC-------------------------------------------- 229 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHH--------------------------------------------
Confidence 45689999994 45799999999999999865432
Q ss_pred cccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEE
Q 002407 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCI 613 (927)
Q Consensus 535 ~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v 613 (927)
+..+.||++.|.|+.|.. ..|++|+.|.+|++||+++++++.++- |...|..+
T Consensus 230 -------------------------~~~L~GHtGSVLCLqyd~-rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhl 283 (499)
T KOG0281|consen 230 -------------------------LKILTGHTGSVLCLQYDE-RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHL 283 (499)
T ss_pred -------------------------HHhhhcCCCcEEeeeccc-eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEE
Confidence 334568999999999964 489999999999999999999998875 89999999
Q ss_pred EEccCCCCEEEEEECCCcEEEEeCCCCcEEE----eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccc
Q 002407 614 QFNPVDDRYFISGSLDAKVRIWSIPERQVVD----WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (927)
Q Consensus 614 ~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~----~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i 689 (927)
.|+ ..++++++.|.+|.+||+....-+. ..+|...|+.+.|+ .+++++++.|.+|++|++.++..+..+
T Consensus 284 rf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl-- 356 (499)
T KOG0281|consen 284 RFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTL-- 356 (499)
T ss_pred EEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhh--
Confidence 996 4799999999999999998765332 45677889999886 569999999999999999999988775
Q ss_pred ccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC--CcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 690 NLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 690 ~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~--~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
.+|...|.|+++.. .++++|+.|.+|++||. ..++..+.+| ..-|.++.| |.+.|++|+.||+|
T Consensus 357 -------~gHkRGIAClQYr~---rlvVSGSSDntIRlwdi~~G~cLRvLeGH--EeLvRciRF--d~krIVSGaYDGki 422 (499)
T KOG0281|consen 357 -------NGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRF--DNKRIVSGAYDGKI 422 (499)
T ss_pred -------hcccccceehhccC---eEEEecCCCceEEEEeccccHHHHHHhch--HHhhhheee--cCceeeeccccceE
Confidence 48999999988853 38999999999999995 4566667766 445777777 56789999999999
Q ss_pred EEEECCCCCCcccccccc-----eeee---eeeecCCCeEEEEecCCceeEEeecCCc
Q 002407 768 YVWKYEAESRPSRSKSIT-----VTHS---YEHFHCQDVSVAIPWPGVGDTWGLQDTY 817 (927)
Q Consensus 768 ~IWdl~s~~~~~~~~~~~-----~~~~---~~~~~~~~v~vavs~~g~~~i~~~~d~~ 817 (927)
+|||+..+..+....... ..++ +-.-+.+-..++.+-+.++.+|+..+..
T Consensus 423 kvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 423 KVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred EEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCC
Confidence 999999887663322110 0111 1111223345555566666777655443
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=218.41 Aligned_cols=270 Identities=21% Similarity=0.316 Sum_probs=227.4
Q ss_pred ccccCCceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 002407 405 SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484 (927)
Q Consensus 405 ~~~~~g~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWd 484 (927)
..-+.|..++++..|+...+-.|.. ++.. -++.||++.||...+..+...-|+++.|=+.+|||
T Consensus 24 ~itp~g~flisa~kd~~pmlr~g~t-----------gdwi-----gtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 24 PITPDGYFLISASKDGKPMLRNGDT-----------GDWI-----GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred CCCCCceEEEEeccCCCchhccCCC-----------CCcE-----EeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 3344555555555555554444443 3333 34589999999999999999999999999999999
Q ss_pred cCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec--CCCceEE
Q 002407 485 VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICS 562 (927)
Q Consensus 485 v~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~--s~k~i~~ 562 (927)
..++..+..+ .|...|..++|+.|...|.+++....+ ++|++ ...+...
T Consensus 88 a~tgdelhsf------~hkhivk~~af~~ds~~lltgg~ekll-----------------------rvfdln~p~App~E 138 (334)
T KOG0278|consen 88 AVTGDELHSF------EHKHIVKAVAFSQDSNYLLTGGQEKLL-----------------------RVFDLNRPKAPPKE 138 (334)
T ss_pred hhhhhhhhhh------hhhheeeeEEecccchhhhccchHHHh-----------------------hhhhccCCCCCchh
Confidence 9999887775 466789999999999999998777655 23333 2356678
Q ss_pred EccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 563 FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 563 l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
+.+|.+.|..+.|... +.|++++.|++||+||..++..++.+....+|+++.+++ ++++|.++ ..+.|++||..+-.
T Consensus 139 ~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-dG~ilTia-~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 139 ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-DGRILTIA-YGSSVKFWDAKSFG 216 (334)
T ss_pred hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeecc-CCCEEEEe-cCceeEEecccccc
Confidence 8999999999999875 889999999999999999999999999999999999999 88876554 55789999999999
Q ss_pred EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 642 VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 642 ~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
++...+.+..|.+..++|+...+++|+.|..++.||..++..+..+. ++|.++|.|+.|+|+|. ..++|+.
T Consensus 217 ~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n--------kgh~gpVhcVrFSPdGE-~yAsGSE 287 (334)
T KOG0278|consen 217 LLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN--------KGHFGPVHCVRFSPDGE-LYASGSE 287 (334)
T ss_pred ceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecc--------cCCCCceEEEEECCCCc-eeeccCC
Confidence 99999999999999999999999999999999999999998776642 58999999999999997 8999999
Q ss_pred CCcEEEEEC
Q 002407 722 DSRIRVVDG 730 (927)
Q Consensus 722 Dg~I~VwD~ 730 (927)
||+|+||.+
T Consensus 288 DGTirlWQt 296 (334)
T KOG0278|consen 288 DGTIRLWQT 296 (334)
T ss_pred CceEEEEEe
Confidence 999999984
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-24 Score=242.67 Aligned_cols=257 Identities=18% Similarity=0.313 Sum_probs=213.0
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
..-...|..++|+|.-.+++++-..|+|++||..-+.
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t------------------------------------------- 42 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT------------------------------------------- 42 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhh-------------------------------------------
Confidence 3456678899999999999999999999999985433
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCce
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYV 610 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V 610 (927)
.+..|..|.++|..++|+|+ ..+++|+.|..|++|+..+.+|+.++. |-++|
T Consensus 43 --------------------------li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYV 96 (1202)
T KOG0292|consen 43 --------------------------LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYV 96 (1202)
T ss_pred --------------------------HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccccee
Confidence 23356689999999999998 889999999999999999999998776 99999
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccc
Q 002407 611 TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (927)
Q Consensus 611 ~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i 689 (927)
..+.|++ .-.+|++++.|.+|+||+..+++++.. .+|...|.|..|+|....+++++-|.+|++||+..-+.......
T Consensus 97 Rt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg 175 (1202)
T KOG0292|consen 97 RTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG 175 (1202)
T ss_pred EEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC
Confidence 9999999 889999999999999999999999875 45667999999999999999999999999999975332221111
Q ss_pred --------------------ccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc--eEEEEeecCCcceE
Q 002407 690 --------------------NLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL--VHKFKGFRNTNSQI 747 (927)
Q Consensus 690 --------------------~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~--~~~~~~~~~~~~v~ 747 (927)
.+......+|...|+-++|+|.-+ +|++|+.|..|++|..... -..-....|...|.
T Consensus 176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVs 254 (1202)
T KOG0292|consen 176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVS 254 (1202)
T ss_pred CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcc
Confidence 011122358999999999999877 8999999999999985431 12222334677899
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCCCCccc
Q 002407 748 SASLTANGRYVVSASEDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 748 sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~ 780 (927)
++-|+|...+|++.++|+.|+|||+........
T Consensus 255 svlfhp~q~lIlSnsEDksirVwDm~kRt~v~t 287 (1202)
T KOG0292|consen 255 SVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT 287 (1202)
T ss_pred eEEecCccceeEecCCCccEEEEecccccceee
Confidence 999999999999999999999999987655443
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=236.77 Aligned_cols=252 Identities=17% Similarity=0.229 Sum_probs=185.7
Q ss_pred eEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 450 QEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 450 q~L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
..|.+|.+.|++++|+| ++++||+|+.|++|+|||+.+......
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~----------------------------------- 113 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN----------------------------------- 113 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc-----------------------------------
Confidence 34689999999999999 889999999999999999865421100
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS- 605 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~- 605 (927)
...++..+.+|...|.+++|+|+ +.|++++.|++|+|||+.+++.+..+.
T Consensus 114 ---------------------------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~ 166 (493)
T PTZ00421 114 ---------------------------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC 166 (493)
T ss_pred ---------------------------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence 01345678899999999999997 589999999999999999999888887
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-CCC-cEEEEEECCCCCEEEEEE----CCCeEEEEECC
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHE-MVTAACYTPDGQGALVGS----YKGSCHLYNTS 679 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-~~~-~V~sla~spdg~~l~tgs----~Dg~I~IwDl~ 679 (927)
|...|.+++|+| ++.+|++++.|++|+|||+++++.+.... |.. .+..+.|.+++..+++++ .|+.|++||++
T Consensus 167 h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 167 HSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred CCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 999999999999 99999999999999999999988776444 333 345678899888877654 47899999998
Q ss_pred CCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEECCcceEEEE-eecCCcceEEEEEecCCCE
Q 002407 680 ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS-ADSRIRVVDGIDLVHKFK-GFRNTNSQISASLTANGRY 757 (927)
Q Consensus 680 ~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs-~Dg~I~VwD~~~~~~~~~-~~~~~~~v~sv~fspdg~~ 757 (927)
+........ .......+....|++++. +|++++ .|+.|++||..+....+. ......++..++|.|.-..
T Consensus 246 ~~~~p~~~~-------~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~ 317 (493)
T PTZ00421 246 KMASPYSTV-------DLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSL 317 (493)
T ss_pred CCCCceeEe-------ccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccccc
Confidence 654221110 012234456667889887 566665 699999999754332222 1223445677888874321
Q ss_pred EEEEECCCcEEEEECCC
Q 002407 758 VVSASEDSYVYVWKYEA 774 (927)
Q Consensus 758 Lasgs~Dg~I~IWdl~s 774 (927)
=+ ..--..++|.+..
T Consensus 318 dv--~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 318 DT--RKCEIARFYALTY 332 (493)
T ss_pred cc--cceeeeEEEEecC
Confidence 11 1222346777653
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=232.02 Aligned_cols=284 Identities=23% Similarity=0.311 Sum_probs=239.1
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc--ccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE--RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~--~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
.+..|.+.|..+.|-++...|+||+.|..|++|++...+ .... ..+....+..+.+.+++..+.+.+.++..
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~t-----LaGs~g~it~~d~d~~~~~~iAas~d~~~- 243 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELIST-----LAGSLGNITSIDFDSDNKHVIAASNDKNL- 243 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhh-----hhccCCCcceeeecCCCceEEeecCCCce-
Confidence 357899999999999998899999999999999997665 2222 35666778899999998888877777755
Q ss_pred eecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEec
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSH 606 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h 606 (927)
.+|.. +.+...+|.||.+.|+++.|... ..+++|+.|.+|++||+....|.+++-.
T Consensus 244 ----------------------r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~ 301 (459)
T KOG0288|consen 244 ----------------------RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP 301 (459)
T ss_pred ----------------------eeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc
Confidence 33443 34667889999999999999887 4599999999999999999999998888
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
...+..|..+ ...+++|-.|++|++||+++..+.......+.|+++..++++..|++.+.|.++.++|+++......
T Consensus 302 ~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~ 378 (459)
T KOG0288|consen 302 GSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT 378 (459)
T ss_pred cccccceEec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEE
Confidence 8888888875 4678999999999999999999999888899999999999999999999999999999999988777
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecCCcceEEEEEecCCCEEEEEECC
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANGRYVVSASED 764 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D 764 (927)
+.-.. .......+.+.|+|++. ++++|+.||.|+||+... +...+........|++++|+|.|.+|++++.+
T Consensus 379 ~sA~g-----~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~ 452 (459)
T KOG0288|consen 379 FSAEG-----FKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQ 452 (459)
T ss_pred eeccc-----cccccccceeEECCCCc-eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCC
Confidence 64321 12334589999999987 899999999999999654 44444444444469999999999999999999
Q ss_pred CcEEEEE
Q 002407 765 SYVYVWK 771 (927)
Q Consensus 765 g~I~IWd 771 (927)
+.+.+|.
T Consensus 453 ~~v~lW~ 459 (459)
T KOG0288|consen 453 KAVTLWT 459 (459)
T ss_pred cceEecC
Confidence 9999993
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-24 Score=214.62 Aligned_cols=262 Identities=18% Similarity=0.330 Sum_probs=210.1
Q ss_pred ceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEE
Q 002407 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (927)
Q Consensus 430 ~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpd-G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~ 508 (927)
.|++.+.+.. +-..+..++.+. -.+.+..++|++. .+.+++++.||+++|||+..
T Consensus 37 ~G~L~ile~~--~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------- 92 (311)
T KOG0277|consen 37 NGRLFILEVT--DPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--------------------- 92 (311)
T ss_pred CceEEEEecC--CCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCC---------------------
Confidence 4555555543 122333334433 4678999999995 45888999999999999522
Q ss_pred EccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeC
Q 002407 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSM 586 (927)
Q Consensus 509 v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~ 586 (927)
..+|++.++.|...|.++.|++. ..++++|.
T Consensus 93 -----------------------------------------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW 125 (311)
T KOG0277|consen 93 -----------------------------------------------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSW 125 (311)
T ss_pred -----------------------------------------------CCcchhHHHhhhhheEEeccccccceeEEeecc
Confidence 12577788999999999999986 56888899
Q ss_pred CCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEEeccCCCcEEEEEECC-CCCE
Q 002407 587 DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDWNDLHEMVTAACYTP-DGQG 663 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~~~~~~~~V~sla~sp-dg~~ 663 (927)
|++|+||+...++.+.+|. |...|...+|+|...++|++++.|+++++||++. ++.+.+..|...|.++.|+. +...
T Consensus 126 D~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~v 205 (311)
T KOG0277|consen 126 DGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNV 205 (311)
T ss_pred CCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcE
Confidence 9999999999999999998 9999999999999999999999999999999976 55555666667999999998 6678
Q ss_pred EEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc---ceEEEEee
Q 002407 664 ALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID---LVHKFKGF 740 (927)
Q Consensus 664 l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~---~~~~~~~~ 740 (927)
|++|+.|+.|++||++.-+... +. ..+|.-.|..++|+|....+|++++.|-+++|||... .+.++..
T Consensus 206 l~Tg~vd~~vr~wDir~~r~pl-~e-------L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~- 276 (311)
T KOG0277|consen 206 LATGGVDNLVRGWDIRNLRTPL-FE-------LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH- 276 (311)
T ss_pred EEecCCCceEEEEehhhccccc-ee-------ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc-
Confidence 9999999999999998765321 11 2589999999999999888999999999999999542 3333332
Q ss_pred cCCcceEEEEEec-CCCEEEEEECCCcEEEEEC
Q 002407 741 RNTNSQISASLTA-NGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 741 ~~~~~v~sv~fsp-dg~~Lasgs~Dg~I~IWdl 772 (927)
|...+..+.|++ ++.++|+++.|+.++||+-
T Consensus 277 -HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 277 -HTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -cceEEeccccccccCceeeecccccceeeecc
Confidence 455677788876 5679999999999999983
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-23 Score=241.67 Aligned_cols=269 Identities=20% Similarity=0.375 Sum_probs=222.7
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
...++..+..+.+|++|+...+.. +...|.||.+.|++++|...+.+|++|+.|.+++|||+.+++
T Consensus 217 ~~~~~~~~s~~~tl~~~~~~~~~~----i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~---------- 282 (537)
T KOG0274|consen 217 HDGFFKSGSDDSTLHLWDLNNGYL----ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE---------- 282 (537)
T ss_pred ecCeEEecCCCceeEEeecccceE----EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc----------
Confidence 356788999999999998765433 233489999999999998878899999999999999987664
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCc
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ 579 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~ 579 (927)
+.+.+.+|...|.++...+ .
T Consensus 283 -----------------------------------------------------------C~~~l~gh~stv~~~~~~~-~ 302 (537)
T KOG0274|consen 283 -----------------------------------------------------------CTHSLQGHTSSVRCLTIDP-F 302 (537)
T ss_pred -----------------------------------------------------------EEEEecCCCceEEEEEccC-c
Confidence 3456678999999998754 4
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEE
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACY 657 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~ 657 (927)
.+++|+.|.+|++|++.++.++.++. |..+|.++..+ +.++++|+.|++|++||+.+++++.. ..|...|.++.+
T Consensus 303 ~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~ 379 (537)
T KOG0274|consen 303 LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIV 379 (537)
T ss_pred eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEe
Confidence 67788999999999999999999999 99999999994 78999999999999999999998874 456689999988
Q ss_pred CCCCCEEEEEECCCeEEEEECCCC-eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ce
Q 002407 658 TPDGQGALVGSYKGSCHLYNTSEN-KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LV 734 (927)
Q Consensus 658 spdg~~l~tgs~Dg~I~IwDl~~~-~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~ 734 (927)
.+. ..++.|+.|++|++||+.+. +++..+ ..|..-+..+.+... +|++++.|++|++||..+ ..
T Consensus 380 ~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl---------~~h~~~v~~l~~~~~---~Lvs~~aD~~Ik~WD~~~~~~~ 446 (537)
T KOG0274|consen 380 DSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL---------QGHTSLVSSLLLRDN---FLVSSSADGTIKLWDAEEGECL 446 (537)
T ss_pred cCc-ceEEeeeeccceEeecCCchhhhhhhh---------cCCcccccccccccc---eeEeccccccEEEeecccCcee
Confidence 765 89999999999999999998 666665 478888877776542 899999999999999654 44
Q ss_pred EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccc
Q 002407 735 HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRS 781 (927)
Q Consensus 735 ~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~ 781 (927)
..+... +...+..+++. ...+++++.|+.+++||++++......
T Consensus 447 ~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 447 RTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 444443 45667777665 467899999999999999998765433
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-23 Score=205.29 Aligned_cols=263 Identities=21% Similarity=0.299 Sum_probs=213.2
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
.+.++...+.+|++|+...+. +++++.+|...|..++.+.|...|++||.|..|.+||+.+++
T Consensus 30 nY~ltcGsdrtvrLWNp~rg~-----liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk------------ 92 (307)
T KOG0316|consen 30 NYCLTCGSDRTVRLWNPLRGA-----LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK------------ 92 (307)
T ss_pred CEEEEcCCCceEEeecccccc-----eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe------------
Confidence 455666677899999976554 456779999999999999999999999999999999998775
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~ 580 (927)
.++.|.+|.+.|+.+.|+.+ ..
T Consensus 93 ---------------------------------------------------------v~Rr~rgH~aqVNtV~fNeesSV 115 (307)
T KOG0316|consen 93 ---------------------------------------------------------VDRRFRGHLAQVNTVRFNEESSV 115 (307)
T ss_pred ---------------------------------------------------------eeeecccccceeeEEEecCcceE
Confidence 34456789999999999988 78
Q ss_pred EEEEeCCCcEEEEeCCCC--cEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEE
Q 002407 581 LLSSSMDKTVRLWHLSSK--TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACY 657 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~--~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~ 657 (927)
+++|+.|.++++||-++. ++++++. ..+.|.+|... +..|++|+.||+++.||++.+++.. -....+|++++|
T Consensus 116 v~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~ 191 (307)
T KOG0316|consen 116 VASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSF 191 (307)
T ss_pred EEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeeh-hhcCCcceeEEe
Confidence 999999999999998754 6777776 77889999984 5789999999999999999998654 233568999999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeE--EEEEcCCCCcEEEEEECCCcEEEEECCcceE
Q 002407 658 TPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT--GFQFAPGSSSEVLVTSADSRIRVVDGIDLVH 735 (927)
Q Consensus 658 spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt--sl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~ 735 (927)
++|++..++++.++++++.|-.+++++..+. +|...-+ ..++.... ..+++|++||.|++||+.+...
T Consensus 192 s~d~nc~La~~l~stlrLlDk~tGklL~sYk---------Ghkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 192 SKDGNCSLASSLDSTLRLLDKETGKLLKSYK---------GHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred cCCCCEEEEeeccceeeecccchhHHHHHhc---------ccccceeeeeeeecccc-eeEEeccCCceEEEEEecccee
Confidence 9999999999999999999999999988763 5555433 33455433 4899999999999999766555
Q ss_pred EEEeecCCcc-eEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 736 KFKGFRNTNS-QISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 736 ~~~~~~~~~~-v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
..+...+... +++++++|.-..|+++. ++.+..|.-+
T Consensus 262 ~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~~ 299 (307)
T KOG0316|consen 262 ISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQE 299 (307)
T ss_pred eeeeccCCceeEEeeecccCccceeEec-CCceeceeeh
Confidence 5444444444 78999999888888876 4457777543
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-24 Score=220.97 Aligned_cols=271 Identities=22% Similarity=0.314 Sum_probs=229.6
Q ss_pred CeEEEccCceEEEEeccCcccccceeeee---EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccc
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQ---EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q---~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
.++++|+.+|-|.+|+..++.+.+-...| .|..|..+|.||.||.|...||+|+.||.|+||.+.++.+++.+.
T Consensus 226 qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--- 302 (508)
T KOG0275|consen 226 QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--- 302 (508)
T ss_pred ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh---
Confidence 56899999999999999998887655544 456799999999999999999999999999999999998777651
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd 578 (927)
+.|...|+|+.|+.|
T Consensus 303 -----------------------------------------------------------------rAHtkGvt~l~FSrD 317 (508)
T KOG0275|consen 303 -----------------------------------------------------------------RAHTKGVTCLSFSRD 317 (508)
T ss_pred -----------------------------------------------------------------hhhccCeeEEEEccC
Confidence 258999999999998
Q ss_pred -cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC---CCcEE
Q 002407 579 -QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL---HEMVT 653 (927)
Q Consensus 579 -~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~---~~~V~ 653 (927)
..+++++.|.+|+|.-+.+|++++.|. |...|+...|.+ +|.++++++.||+|++|+..+.+++..+.. ...|+
T Consensus 318 ~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vn 396 (508)
T KOG0275|consen 318 NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVN 396 (508)
T ss_pred cchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccce
Confidence 789999999999999999999999998 999999999999 999999999999999999999998876544 35788
Q ss_pred EEEECC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-
Q 002407 654 AACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI- 731 (927)
Q Consensus 654 sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~- 731 (927)
.+..-| +...++++...++|+|.++. ++.+..+.. .+...+...+.+.+|.|. ++.+.+.|+.++.|...
T Consensus 397 sv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsS------GkREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~s 468 (508)
T KOG0275|consen 397 SVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSS------GKREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVLS 468 (508)
T ss_pred eEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeecc------CCccCCceEEEEecCCCc-EEEEEccCcEEEEEEeec
Confidence 888887 45678899999999999986 455554432 123455667778999987 89999999999999854
Q ss_pred -cceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEE
Q 002407 732 -DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 732 -~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWd 771 (927)
.+...+.. +...++.++-+|..++||+-++||.+++|.
T Consensus 469 G~LE~tl~V--hEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 469 GKLERTLPV--HEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred Cceeeeeec--ccccccccccCcccchhhhhcccchhhhcC
Confidence 44444444 466788999999999999999999999995
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-23 Score=223.74 Aligned_cols=286 Identities=21% Similarity=0.326 Sum_probs=232.8
Q ss_pred CCCCEEEEEEcCCCCE-EEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 455 HNGSIWSIKFSLDGRY-LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 455 H~~~I~~vafSpdG~~-LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
..++|.+++|+|...| +|+++ .-.|.||+..+......+ ......+.++.|-.||.+++++...+.+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~-----srFk~~v~s~~fR~DG~LlaaGD~sG~V------ 92 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTF-----SRFKDVVYSVDFRSDGRLLAAGDESGHV------ 92 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhH-----HhhccceeEEEeecCCeEEEccCCcCcE------
Confidence 4578999999996543 44443 347999998877665554 3445778899999999999999999988
Q ss_pred ccccccccccCcccccceEeecCC-CceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCc
Q 002407 534 RSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDY 609 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~ 609 (927)
.+|+++. ..++.+.+|+.+|..+.|+|+ ..|++|+.|+.+++||+.+......+. |+++
T Consensus 93 -----------------~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY 155 (487)
T KOG0310|consen 93 -----------------KVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY 155 (487)
T ss_pred -----------------EEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce
Confidence 4555333 246678899999999999997 568899999999999999988654444 9999
Q ss_pred eEEEEEccCCCCEEEEEECCCcEEEEeCCCC-cEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecc
Q 002407 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIPER-QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 610 V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~-~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~ 688 (927)
|.|.+|+|.++.++++|+.||+|++||++.. ..+..+.|..+|..+.+-|.|..|++++ ...|++||+.+|.......
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhh
Confidence 9999999988889999999999999999987 7777889999999999999999998886 4579999999665444322
Q ss_pred cccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
..|.+.|||+.+..++. .|++++-|+.|++||..+.... ....-.++|.+++++|+++.++.|-.+|.+.
T Consensus 235 --------~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~~Kvv-~s~~~~~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 235 --------FNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTNYKVV-HSWKYPGPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred --------hcccceEEEEEeecCCc-eEeecccccceEEEEccceEEE-EeeecccceeeEEecCCCceEEEecccceee
Confidence 35999999999999875 8999999999999996554433 3445678999999999999999999999888
Q ss_pred EEECCCCCCccc
Q 002407 769 VWKYEAESRPSR 780 (927)
Q Consensus 769 IWdl~s~~~~~~ 780 (927)
+=+....+++..
T Consensus 305 ~rr~~~k~k~s~ 316 (487)
T KOG0310|consen 305 IRRREVKKKPSK 316 (487)
T ss_pred eehhhcccCCCc
Confidence 776655554433
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-22 Score=235.42 Aligned_cols=257 Identities=13% Similarity=0.188 Sum_probs=193.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~ 534 (927)
|-..|....+++|+..+++++.+..+..|+...+..+..+ ...|. +
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~-----------------~~~G~----------~------- 64 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKH-----------------TDYGK----------L------- 64 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeec-----------------ccccc----------C-------
Confidence 4556777788889888899999999999986543211000 00000 0
Q ss_pred cccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEeCCCCc-------EEEEEe
Q 002407 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-S-QHLLSSSMDKTVRLWHLSSKT-------CLKIFS 605 (927)
Q Consensus 535 ~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp-d-~~L~Sgs~DgtV~lWDl~t~~-------~~~~~~ 605 (927)
. .....+.+|.+.|++++|+| + .+|++++.|++|++||+.++. ++..+.
T Consensus 65 ---------------------~-~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~ 122 (493)
T PTZ00421 65 ---------------------A-SNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ 122 (493)
T ss_pred ---------------------C-CCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec
Confidence 0 11124678999999999999 5 689999999999999997652 344554
Q ss_pred -cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCee
Q 002407 606 -HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (927)
Q Consensus 606 -h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~ 683 (927)
|...|.+++|+|...++|++++.|++|+|||+.+++.+..+ .|...|.+++|+|+|.+|++++.|+.|+|||+++++.
T Consensus 123 gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE
Confidence 99999999999944579999999999999999998877654 4667899999999999999999999999999999887
Q ss_pred eeecccccccccccCCCCC-eEEEEEcCCCCcEEEEEE----CCCcEEEEECCcceEEEEee--cCCcceEEEEEecCCC
Q 002407 684 QQKSPINLQNKKKRSHQRK-ITGFQFAPGSSSEVLVTS----ADSRIRVVDGIDLVHKFKGF--RNTNSQISASLTANGR 756 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~-Vtsl~fspdg~~~Llsgs----~Dg~I~VwD~~~~~~~~~~~--~~~~~v~sv~fspdg~ 756 (927)
+..+. .|... +..+.|.+++. .+++++ .|+.|++||.++....+... .....+....|+++++
T Consensus 203 v~tl~---------~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~ 272 (493)
T PTZ00421 203 VSSVE---------AHASAKSQRCLWAKRKD-LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN 272 (493)
T ss_pred EEEEe---------cCCCCcceEEEEcCCCC-eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC
Confidence 65542 45443 45677888776 455543 47999999976544333222 2233455667899999
Q ss_pred EEEEEE-CCCcEEEEECCCCCC
Q 002407 757 YVVSAS-EDSYVYVWKYEAESR 777 (927)
Q Consensus 757 ~Lasgs-~Dg~I~IWdl~s~~~ 777 (927)
+|++++ .|+.|++||+.++..
T Consensus 273 ~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 273 LLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred EEEEEEeCCCeEEEEEeeCCce
Confidence 999887 599999999987653
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-22 Score=235.08 Aligned_cols=254 Identities=14% Similarity=0.204 Sum_probs=189.9
Q ss_pred ccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCcCcccceeecccccCcccc
Q 002407 427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM 505 (927)
Q Consensus 427 g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpd-G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~ 505 (927)
|...+.|++|+...+ .....|.+|.+.|++|+|+|+ +.+||||+.|++|+||++.++......
T Consensus 50 GG~~gvI~L~~~~r~-----~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~----------- 113 (568)
T PTZ00420 50 GGLIGAIRLENQMRK-----PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE----------- 113 (568)
T ss_pred CCceeEEEeeecCCC-----ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc-----------
Confidence 566788999976533 234678999999999999996 789999999999999998653210000
Q ss_pred EEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-c-EEEE
Q 002407 506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q-HLLS 583 (927)
Q Consensus 506 v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~-~L~S 583 (927)
...++..+.+|...|.+++|+|+ . .|++
T Consensus 114 --------------------------------------------------i~~p~~~L~gH~~~V~sVaf~P~g~~iLaS 143 (568)
T PTZ00420 114 --------------------------------------------------IKDPQCILKGHKKKISIIDWNPMNYYIMCS 143 (568)
T ss_pred --------------------------------------------------cccceEEeecCCCcEEEEEECCCCCeEEEE
Confidence 01234567789999999999998 3 4679
Q ss_pred EeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-CCCcE-----EEEEE
Q 002407 584 SSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEMV-----TAACY 657 (927)
Q Consensus 584 gs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-~~~~V-----~sla~ 657 (927)
++.|++|+|||+.+++.+..+.|...|.+++|+| ++.+|++++.|+.|+|||+++++.+..+. |...+ ....|
T Consensus 144 gS~DgtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~f 222 (568)
T PTZ00420 144 SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGL 222 (568)
T ss_pred EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeE
Confidence 9999999999999999888788888999999999 99999999999999999999998876443 44433 23345
Q ss_pred CCCCCEEEEEECCC----eEEEEECCC-CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc
Q 002407 658 TPDGQGALVGSYKG----SCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID 732 (927)
Q Consensus 658 spdg~~l~tgs~Dg----~I~IwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~ 732 (927)
++++.+|++++.++ .|+|||++. ...+....+ ..+...+..+.. ++...++++|+.|+.|++|+...
T Consensus 223 s~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l-------d~~~~~L~p~~D-~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 223 GGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI-------DNASAPLIPHYD-ESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred cCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-------cCCccceEEeee-CCCCCEEEEEECCCeEEEEEccC
Confidence 68999999988774 799999985 333333221 123333333333 44344888999999999999643
Q ss_pred -ceEEEEeecCCcceEEEEEecCC
Q 002407 733 -LVHKFKGFRNTNSQISASLTANG 755 (927)
Q Consensus 733 -~~~~~~~~~~~~~v~sv~fspdg 755 (927)
....+..+....++..++|.|..
T Consensus 295 ~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 295 GSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CcEEeecccccCCCccceEEcccc
Confidence 33444455566778889999864
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-23 Score=242.69 Aligned_cols=307 Identities=22% Similarity=0.282 Sum_probs=236.0
Q ss_pred cCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEecCcCc----ccce-e--ecccccCccccEEEEccCCCCCeecccccC
Q 002407 454 AHNGSIWSIKFSLDGRYLASAG--EDCVIHVWQVVESE----RKGE-L--LEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs--~DgtVrVWdv~~~~----~~~~-l--~~~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
.|+..|.+|+.+|||..+|||| .||.++||+...-- ...+ + .......|...+.++.|++||.++|+++++
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3566799999999999999999 89999999875321 1111 0 112235788899999999999999999999
Q ss_pred Cceeeeccccccccccccc-CcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEE
Q 002407 525 NHLEKKRRGRSINRKSLSL-DHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK 602 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~-~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~ 602 (927)
..+.++.+........+.. ..... ...-+.+..|.+|...|.+++|+|+ .+|++++.|++|.||+..+.++++
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~-----vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKN-----VESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred ceEEEeeecccCCcccccccccccc-----cceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence 9887776653111111100 00000 1123678899999999999999998 789999999999999999999999
Q ss_pred EEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC-------CCcEEEEEECCCCCEEEEEEC----C
Q 002407 603 IFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-------HEMVTAACYTPDGQGALVGSY----K 670 (927)
Q Consensus 603 ~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~-------~~~V~sla~spdg~~l~tgs~----D 670 (927)
++. |...|..+.|.| -|+||++-+.|++|+||.+.+-.+...+.. ...+..+.|+|||++|++... .
T Consensus 166 vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~ 244 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK 244 (942)
T ss_pred eeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence 887 999999999999 999999999999999999877555443322 246889999999999998633 3
Q ss_pred CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC--------CC--------cEEEEEECCCcEEEEECCcce
Q 002407 671 GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG--------SS--------SEVLVTSADSRIRVVDGIDLV 734 (927)
Q Consensus 671 g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd--------g~--------~~Llsgs~Dg~I~VwD~~~~~ 734 (927)
.++.|.+-.+-+....+ .+|.+++.++.|+|. |. ..+++|+.|++|.||......
T Consensus 245 ~~~~IieR~tWk~~~~L---------vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 245 STIAIIERGTWKVDKDL---------VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred ceeEEEecCCceeeeee---------ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 35777776555444333 499999999999982 11 167889999999999965444
Q ss_pred EEEEeec-CCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 735 HKFKGFR-NTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 735 ~~~~~~~-~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
..+..+. ....|..++|+|||..|+.+|.||+|.+..++..
T Consensus 316 Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 316 PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 3333321 3567999999999999999999999999999864
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=210.47 Aligned_cols=241 Identities=24% Similarity=0.396 Sum_probs=202.1
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeee
Q 002407 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~ 530 (927)
.+++|.++|++++. +|.|+||||.|-+|+|||+.......
T Consensus 38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg-------------------------------------- 77 (362)
T KOG0294|consen 38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG-------------------------------------- 77 (362)
T ss_pred cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc--------------------------------------
Confidence 46899999999999 58999999999999999987654332
Q ss_pred cccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h 606 (927)
.+-.|.+.|+++.|.+. ..|++|+.||.|.+|+.....++..+. |
T Consensus 78 -------------------------------~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H 126 (362)
T KOG0294|consen 78 -------------------------------ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAH 126 (362)
T ss_pred -------------------------------ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccc
Confidence 23358999999999987 489999999999999999999999998 9
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
...|+.|+.+| .+++-++.+.|+.+++||+-.++...........+.+.|+|.|.+++++..+ .|-||.+.+..+...
T Consensus 127 ~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~ 204 (362)
T KOG0294|consen 127 KGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFRE 204 (362)
T ss_pred ccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhh
Confidence 99999999999 9999999999999999999999887777777777779999999999888754 688999988766554
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEE--ecCCCEEEEEECC
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASL--TANGRYVVSASED 764 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~f--spdg~~Lasgs~D 764 (927)
. .....+.++.|...+ .|++|..|+.|.+||............|...|-.+.+ .|++.||++++.|
T Consensus 205 i----------~~~~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSD 272 (362)
T KOG0294|consen 205 I----------ENPKRILCATFLDGS--ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSD 272 (362)
T ss_pred h----------hccccceeeeecCCc--eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccC
Confidence 3 233667788887654 7999999999999997655444444455666777653 5678999999999
Q ss_pred CcEEEEECCCCC
Q 002407 765 SYVYVWKYEAES 776 (927)
Q Consensus 765 g~I~IWdl~s~~ 776 (927)
|.|+|||++...
T Consensus 273 G~I~vWd~~~~~ 284 (362)
T KOG0294|consen 273 GFIKVWDIDMET 284 (362)
T ss_pred ceEEEEEccccc
Confidence 999999998764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-23 Score=222.06 Aligned_cols=296 Identities=22% Similarity=0.333 Sum_probs=237.2
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecc------------cc-cCccccEEEEccCCCCC
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK------------QE-DGHLNMLLLANGSPEPT 516 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~------------~~-~~~~~~v~~v~~spd~~ 516 (927)
+.+..|.-+|.||+++||++++++++.|++|.-|++.++.....+... .. ..|...+.+++.++|+.
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 445789999999999999999999999999999999988754222111 11 27788899999999999
Q ss_pred eecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEe
Q 002407 517 SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH 594 (927)
Q Consensus 517 ~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWD 594 (927)
++++++.+..+. +|.. +.+++..|.+|.+.|.+++|-.. ..|++++.|.+|++|+
T Consensus 216 ylatgg~d~~v~-----------------------Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 216 YLATGGRDRHVQ-----------------------IWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWS 272 (479)
T ss_pred EEEecCCCceEE-----------------------EecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEe
Confidence 999999988873 3333 45778889999999999999876 8899999999999999
Q ss_pred CCCCcEEEEE-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeE
Q 002407 595 LSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSC 673 (927)
Q Consensus 595 l~t~~~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I 673 (927)
++....+.++ .|.+.|..|.... -++.+.+|+.|.++++|++.....+.+..+...+-|++|-.+ ..|++|+.+|.|
T Consensus 273 ~~~~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~I 350 (479)
T KOG0299|consen 273 IDQLSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSI 350 (479)
T ss_pred hhHhHHHHHHhCCccceeeechhc-ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceE
Confidence 9988777654 5999999999886 677777777999999999988777777888889999999765 479999999999
Q ss_pred EEEECCCCeeeeecccccccccc---cCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc---eEEEEeecCCcceE
Q 002407 674 HLYNTSENKLQQKSPINLQNKKK---RSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL---VHKFKGFRNTNSQI 747 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i~~~~~~~---~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~---~~~~~~~~~~~~v~ 747 (927)
.+|++...+.+....+....... ..+...|++++..|... ++++|+.+|.|++|-.... +..+....-.+.|+
T Consensus 351 aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVN 429 (479)
T KOG0299|consen 351 ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVN 429 (479)
T ss_pred EEeeecccCceeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCccccceeeecccccEEE
Confidence 99999998888776654433222 22334899999999655 9999999999999985544 44444445677899
Q ss_pred EEEEecCCCEEEEE-ECCCcEEEEE
Q 002407 748 SASLTANGRYVVSA-SEDSYVYVWK 771 (927)
Q Consensus 748 sv~fspdg~~Lasg-s~Dg~I~IWd 771 (927)
+++|+++|++|++| +....+--|-
T Consensus 430 sl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 430 SLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred EEEEccCCCEEEEecccccccceee
Confidence 99999999976665 3444443343
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-22 Score=221.33 Aligned_cols=460 Identities=16% Similarity=0.174 Sum_probs=286.5
Q ss_pred CCeEEEcc--CceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecCcCcccceeec
Q 002407 421 QDVSFHGQ--ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGELLE 496 (927)
Q Consensus 421 ~~~~~~g~--~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~--DgtVrVWdv~~~~~~~~l~~ 496 (927)
..++++|. ....+++|+...... ..+|..|+-.|+|++|+|.++||++.|. |-.|-+||+.......
T Consensus 90 GryvatGEcG~~pa~kVw~la~h~v-----VAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~a---- 160 (1080)
T KOG1408|consen 90 GRYVATGECGRTPASKVWSLAFHGV-----VAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGA---- 160 (1080)
T ss_pred CcEEEecccCCCccceeeeeccccc-----hhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccc----
Confidence 35677776 556789998765543 3567899999999999999999998775 6678899886543222
Q ss_pred ccccCccccEEEEccCCCCCeecccccCCceeeec-cccccccc------------ccccC--------cccccceEeec
Q 002407 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR-RGRSINRK------------SLSLD--------HMVVPETVFAL 555 (927)
Q Consensus 497 ~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~-~~~~~~~~------------~~~~~--------~~~~~~~v~~~ 555 (927)
.......|..++|+.++.++++.+... +..+. ........ .+... .-...+..|.+
T Consensus 161 --snkiss~Vsav~fsEdgSYfvT~gnrH-vk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfai 237 (1080)
T KOG1408|consen 161 --SNKISSVVSAVAFSEDGSYFVTSGNRH-VKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAI 237 (1080)
T ss_pred --ccccceeEEEEEEccCCceeeeeeeee-EEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEE
Confidence 233446677889999988877764432 21111 11110000 00000 00000000000
Q ss_pred CC----------------------------------------CceEEE-------------------------------c
Q 002407 556 SD----------------------------------------KPICSF-------------------------------Q 564 (927)
Q Consensus 556 s~----------------------------------------k~i~~l-------------------------------~ 564 (927)
+. ..++.| .
T Consensus 238 t~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s 317 (1080)
T KOG1408|consen 238 TAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNS 317 (1080)
T ss_pred ecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhccccccccc
Confidence 00 000000 0
Q ss_pred ----cCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC----cEEEEEecCCceEEEEEccC----------CCCEEEE
Q 002407 565 ----GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK----TCLKIFSHSDYVTCIQFNPV----------DDRYFIS 625 (927)
Q Consensus 565 ----gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~----~~~~~~~h~~~V~~v~fsp~----------dg~~L~s 625 (927)
+---...++.|.+. .+|.....|..|+|||++.- ++-..+.|...|+.|.--|. -...|++
T Consensus 318 ~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~T 397 (1080)
T KOG1408|consen 318 ESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTT 397 (1080)
T ss_pred ccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeE
Confidence 00112456778876 78999999999999999863 44445558888888876551 1235999
Q ss_pred EECCCcEEEEeCCCC---cE-----------------------------------EEeccCCCcEEEEEECCCCCEEEEE
Q 002407 626 GSLDAKVRIWSIPER---QV-----------------------------------VDWNDLHEMVTAACYTPDGQGALVG 667 (927)
Q Consensus 626 gs~Dg~I~IWDl~t~---~~-----------------------------------v~~~~~~~~V~sla~spdg~~l~tg 667 (927)
++.|++|++|++..+ .+ ....+....+.+++++|+|++|++|
T Consensus 398 CSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsG 477 (1080)
T KOG1408|consen 398 CSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASG 477 (1080)
T ss_pred ecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceeccc
Confidence 999999999998652 11 0112233469999999999999999
Q ss_pred ECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC--CCcEEEEEECCCcEEEEECCc---ceEEEEeecC
Q 002407 668 SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG--SSSEVLVTSADSRIRVVDGID---LVHKFKGFRN 742 (927)
Q Consensus 668 s~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd--g~~~Llsgs~Dg~I~VwD~~~---~~~~~~~~~~ 742 (927)
..-|+++||++........+ ..|...|.|+.|+.. +..+|++++.|..|+|||... +++.+. .|
T Consensus 478 Dr~GnlrVy~Lq~l~~~~~~---------eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld--~H 546 (1080)
T KOG1408|consen 478 DRGGNLRVYDLQELEYTCFM---------EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD--GH 546 (1080)
T ss_pred CccCceEEEEehhhhhhhhe---------ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc--cc
Confidence 99999999999887666554 489999999999853 234789999999999999643 334444 45
Q ss_pred CcceEEEEEecCC--CEEEEEECCCcEEEEECCCCCCcccc-cccceeeeeeeecCCCeEEEEecCCceeEEeecCCcee
Q 002407 743 TNSQISASLTANG--RYVVSASEDSYVYVWKYEAESRPSRS-KSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLD 819 (927)
Q Consensus 743 ~~~v~sv~fspdg--~~Lasgs~Dg~I~IWdl~s~~~~~~~-~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~ 819 (927)
...|+++.|.-+| ..+++++.|..|++=-.......... +......... -.-+++...-...+...+|+.++
T Consensus 547 SssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktT-----lYDm~Vdp~~k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 547 SSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTT-----LYDMAVDPTSKLVVTVCQDRNIR 621 (1080)
T ss_pred ccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccce-----EEEeeeCCCcceEEEEecccceE
Confidence 7789999998887 78999999998765433311110000 0000000000 00112222222233344555555
Q ss_pred eccccCCCCCccee-ccCCCcccCcceeeecCCCCeEEEeccccccCccccccCch---hhccccccCCCceecccCCCC
Q 002407 820 EFSTANHPPTPVEE-ISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEE---KLVLTARNRSPRTSLDISNGI 895 (927)
Q Consensus 820 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e---~l~~~~~~~s~v~s~~~~~~~ 895 (927)
.+...++....... ..++++.. .-+..-|.|-|||+.. .|+++.+.+-- -+....+|...++
T Consensus 622 if~i~sgKq~k~FKgs~~~eG~l--IKv~lDPSgiY~atSc----sdktl~~~Df~sgEcvA~m~GHsE~VT-------- 687 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKGSRDHEGDL--IKVILDPSGIYLATSC----SDKTLCFVDFVSGECVAQMTGHSEAVT-------- 687 (1080)
T ss_pred EEeccccceeeeecccccCCCce--EEEEECCCccEEEEee----cCCceEEEEeccchhhhhhcCcchhee--------
Confidence 55554433322211 11112222 2234679999999965 78888777643 2223456766665
Q ss_pred CcccCCCCCEEEEEcCCCcEEEeecCCCcc
Q 002407 896 SSSISAWGMVIVTAGLRGEIRAYQNFGLPV 925 (927)
Q Consensus 896 ~~a~S~dG~vLvTgs~DG~IrvW~~~glP~ 925 (927)
.+.|++|.+.|++++-||.|.||+ ||.
T Consensus 688 G~kF~nDCkHlISvsgDgCIFvW~---lp~ 714 (1080)
T KOG1408|consen 688 GVKFLNDCKHLISVSGDGCIFVWK---LPL 714 (1080)
T ss_pred eeeecccchhheeecCCceEEEEE---Cch
Confidence 368999999999999999999999 664
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-23 Score=212.78 Aligned_cols=214 Identities=21% Similarity=0.349 Sum_probs=179.0
Q ss_pred ceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCC-----------------C-cEEEEE-ecCCceEEEEEccC
Q 002407 559 PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS-----------------K-TCLKIF-SHSDYVTCIQFNPV 618 (927)
Q Consensus 559 ~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t-----------------~-~~~~~~-~h~~~V~~v~fsp~ 618 (927)
....+..|..++.+.+|++| .+++||+.|..|+|.|++. + -.++++ .|.+.|+++.|+|
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP- 182 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP- 182 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-
Confidence 34467789999999999999 6688999999999999871 1 123443 3999999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCcE---EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccc
Q 002407 619 DDRYFISGSLDAKVRIWSIPERQV---VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK 695 (927)
Q Consensus 619 dg~~L~sgs~Dg~I~IWDl~t~~~---v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~ 695 (927)
...+|++++.|++|++||+..... ...+....+|.++.|+|.|.+|++|.....+++||+++.++..... .
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan------P 256 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN------P 256 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC------c
Confidence 999999999999999999976433 2345556799999999999999999999999999999988765433 1
Q ss_pred ccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC--CcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 696 KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 696 ~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~--~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
...|...|+++.+++.+. +.++++.||.|+|||. ..++..+........|.++.|+.+|+||++.+.|..+++|.+.
T Consensus 257 d~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred ccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 257999999999999987 8999999999999995 3455555555567789999999999999999999999999999
Q ss_pred CCCCccc
Q 002407 774 AESRPSR 780 (927)
Q Consensus 774 s~~~~~~ 780 (927)
++..+..
T Consensus 336 t~R~l~~ 342 (430)
T KOG0640|consen 336 TGRMLKE 342 (430)
T ss_pred CCceEEE
Confidence 8765433
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=229.13 Aligned_cols=261 Identities=19% Similarity=0.278 Sum_probs=216.3
Q ss_pred CceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEE
Q 002407 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (927)
Q Consensus 429 ~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~ 508 (927)
....|.+|+..++++..+.. -++..|+++.|+++|.+||.|..+|.|.|||..+.+....
T Consensus 195 lg~~vylW~~~s~~v~~l~~-----~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~--------------- 254 (484)
T KOG0305|consen 195 LGQSVYLWSASSGSVTELCS-----FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT--------------- 254 (484)
T ss_pred ecceEEEEecCCCceEEeEe-----cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc---------------
Confidence 34467888888887655543 3489999999999999999999999999999876654333
Q ss_pred EccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEcc-CCCCEEEEEecCCcEEEEEeCC
Q 002407 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG-HLDDVLDLSWSKSQHLLSSSMD 587 (927)
Q Consensus 509 v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~g-H~~~V~~l~~spd~~L~Sgs~D 587 (927)
+.+ |...|-+++|. ...+.+|+.|
T Consensus 255 ------------------------------------------------------~~~~h~~rvg~laW~-~~~lssGsr~ 279 (484)
T KOG0305|consen 255 ------------------------------------------------------LRGSHASRVGSLAWN-SSVLSSGSRD 279 (484)
T ss_pred ------------------------------------------------------ccCCcCceeEEEecc-CceEEEecCC
Confidence 334 88999999998 5779999999
Q ss_pred CcEEEEeCCCCcEEEE-Ee-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc-EEEeccCCCcEEEEEECC-CCCE
Q 002407 588 KTVRLWHLSSKTCLKI-FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-VVDWNDLHEMVTAACYTP-DGQG 663 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~-~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~-~v~~~~~~~~V~sla~sp-dg~~ 663 (927)
+.|..+|++..+.... +. |...|..+.|++ ++++|++|+.|+.+.|||....+ ++.+..|...|.+++|+| ....
T Consensus 280 ~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~l 358 (484)
T KOG0305|consen 280 GKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGL 358 (484)
T ss_pred CcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCc
Confidence 9999999998765544 44 999999999999 99999999999999999996544 456778889999999999 4556
Q ss_pred EEEE--ECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEE-EECCCcEEEEECCcceEEEEee
Q 002407 664 ALVG--SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV-TSADSRIRVVDGIDLVHKFKGF 740 (927)
Q Consensus 664 l~tg--s~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Lls-gs~Dg~I~VwD~~~~~~~~~~~ 740 (927)
||+| +.|+.|++||+.++..+... .....|+.+.|++..+.++.+ |..+..|.||+...+.......
T Consensus 359 LAsGGGs~D~~i~fwn~~~g~~i~~v----------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~ 428 (484)
T KOG0305|consen 359 LATGGGSADRCIKFWNTNTGARIDSV----------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL 428 (484)
T ss_pred eEEcCCCcccEEEEEEcCCCcEeccc----------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec
Confidence 7775 56899999999999888763 567889999999987644443 3467899999976655555556
Q ss_pred cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 741 RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 741 ~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
.|...|..++++|||..|++|+.|.++++|++-..
T Consensus 429 gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 429 GHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 67788999999999999999999999999999875
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-24 Score=223.52 Aligned_cols=288 Identities=15% Similarity=0.266 Sum_probs=227.6
Q ss_pred EeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 451 EIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG-~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
.|.||.+.|.|++=+|.. ..+|||+.||.|+|||+.+..+...+ ..|.+.|..+.... ..+.+++.+..+
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-----~AH~G~V~Gi~v~~--~~~~tvgdDKtv-- 131 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-----KAHEGLVRGICVTQ--TSFFTVGDDKTV-- 131 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-----ecccCceeeEEecc--cceEEecCCcce--
Confidence 458999999999999976 78999999999999999988877775 45666677666655 344455566555
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~ 607 (927)
..|.+.+.+++++.+. ..++.|.-+.. ..++|++. .|-|||.....++..+. ..
T Consensus 132 ---------------------K~wk~~~~p~~tilg~-s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~ 187 (433)
T KOG0268|consen 132 ---------------------KQWKIDGPPLHTILGK-SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGA 187 (433)
T ss_pred ---------------------eeeeccCCcceeeecc-ccccccccccccccccccCc--eeeecccccCCccceeecCC
Confidence 3445555566666543 45666666554 66777775 48999999999999988 77
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
+.|.++.|+|....+|++|..|+.|.|||+++..++......-.-+.++|+|.+-.|++|..|..++.||++........
T Consensus 188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v 267 (433)
T KOG0268|consen 188 DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV 267 (433)
T ss_pred CceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchh
Confidence 88999999998888899999999999999999998877766777889999998888999999999999999875432221
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEee-cCCcceEEEEEecCCCEEEEEECCCc
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGF-RNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
...|...|.++.|+|.|. .+++|+.|.+|+||........-..| ..-..|.++.|+.|.+|+++|++|++
T Consensus 268 --------~~dhvsAV~dVdfsptG~-EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~n 338 (433)
T KOG0268|consen 268 --------HKDHVSAVMDVDFSPTGQ-EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGN 338 (433)
T ss_pred --------hcccceeEEEeccCCCcc-hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcc
Confidence 258999999999999998 79999999999999854432211111 12356889999999999999999999
Q ss_pred EEEEECCCCCCccc
Q 002407 767 VYVWKYEAESRPSR 780 (927)
Q Consensus 767 I~IWdl~s~~~~~~ 780 (927)
|++|.-...+++..
T Consensus 339 vRlWka~Aseklgv 352 (433)
T KOG0268|consen 339 VRLWKAKASEKLGV 352 (433)
T ss_pred eeeeecchhhhcCC
Confidence 99999887665543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=204.66 Aligned_cols=264 Identities=16% Similarity=0.243 Sum_probs=201.0
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
+++++...+.++.+|--..++.. -++.||++.||||+.+-+.++|+||+.|.+++|||+.+++.+..+.
T Consensus 23 DLlFscaKD~~~~vw~s~nGerl-----Gty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k------ 91 (327)
T KOG0643|consen 23 DLLFSCAKDSTPTVWYSLNGERL-----GTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK------ 91 (327)
T ss_pred cEEEEecCCCCceEEEecCCcee-----eeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee------
Confidence 34555555556666654444433 3457999999999999999999999999999999999998666541
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL 581 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L 581 (927)
-..+|..+.|+.++.+
T Consensus 92 ----------------------------------------------------------------~~~~Vk~~~F~~~gn~ 107 (327)
T KOG0643|consen 92 ----------------------------------------------------------------TNSPVKRVDFSFGGNL 107 (327)
T ss_pred ----------------------------------------------------------------cCCeeEEEeeccCCcE
Confidence 2345667777777554
Q ss_pred EEEeCC------CcEEEEeCC-------CCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE-EEe-
Q 002407 582 LSSSMD------KTVRLWHLS-------SKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-VDW- 645 (927)
Q Consensus 582 ~Sgs~D------gtV~lWDl~-------t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~-v~~- 645 (927)
+..+.| +.|.++|++ ..++...+. +...++.+-|.| -+++|++|..||.|.+||+++++. +..
T Consensus 108 ~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~ 186 (327)
T KOG0643|consen 108 ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSD 186 (327)
T ss_pred EEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEcccCceeeech
Confidence 444433 568899887 455455444 889999999999 999999999999999999999754 443
Q ss_pred ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcE
Q 002407 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI 725 (927)
Q Consensus 646 ~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I 725 (927)
..|...|+.+.+++|..++++++.|.+-++||+.+..++.++ ....+|++.+++|-...+++.|+.+ ..
T Consensus 187 ~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty----------~te~PvN~aaisP~~d~VilgGGqe-A~ 255 (327)
T KOG0643|consen 187 EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY----------TTERPVNTAAISPLLDHVILGGGQE-AM 255 (327)
T ss_pred hhhccccccccccCCcceEEecccCccceeeeccceeeEEEe----------eecccccceecccccceEEecCCce-ee
Confidence 456679999999999999999999999999999999888875 3557899999999776444433333 22
Q ss_pred EE--------------EEC--CcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 726 RV--------------VDG--IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 726 ~V--------------wD~--~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
-| |+. .+.+..++ .|-++|.+++|+|+|+..++|++||.|+|.-++.
T Consensus 256 dVTTT~~r~GKFEArFyh~i~eEEigrvk--GHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 256 DVTTTSTRAGKFEARFYHLIFEEEIGRVK--GHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eeeeecccccchhhhHHHHHHHHHhcccc--ccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 22 221 12223333 3578999999999999999999999999987654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=208.07 Aligned_cols=325 Identities=19% Similarity=0.283 Sum_probs=220.3
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccce-eecccccCccccEEEEc
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE-LLEKQEDGHLNMLLLAN 510 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~-l~~~~~~~~~~~v~~v~ 510 (927)
+.+.|+++...+..-+....|++|.+.|++|+|+.||++|||++.|++|+||++.+...... ... ..-.......+.
T Consensus 62 r~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R--~nve~dhpT~V~ 139 (420)
T KOG2096|consen 62 RNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIR--QNVEYDHPTRVV 139 (420)
T ss_pred chhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhh--ccccCCCceEEE
Confidence 45667666666666666778899999999999999999999999999999999987432111 000 011123456778
Q ss_pred cCCCCCeecc-cccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCC
Q 002407 511 GSPEPTSLSP-KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK 588 (927)
Q Consensus 511 ~spd~~~la~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~Dg 588 (927)
|.||...++. ...+..+......+... .... .... ....+..-+.|.-.|..+-...+ .+|++++.|.
T Consensus 140 FapDc~s~vv~~~~g~~l~vyk~~K~~d-G~~~--~~~v-------~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt 209 (420)
T KOG2096|consen 140 FAPDCKSVVVSVKRGNKLCVYKLVKKTD-GSGS--HHFV-------HIDNLEFERKHQVDIINIGIAGNAKYIMSASLDT 209 (420)
T ss_pred ECCCcceEEEEEccCCEEEEEEeeeccc-CCCC--cccc-------cccccccchhcccceEEEeecCCceEEEEecCCC
Confidence 8998655444 33334443332222111 0000 0000 00111122346677777777666 7899999999
Q ss_pred cEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCC---CC------cEEEeccCCCcEEEEEEC
Q 002407 589 TVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP---ER------QVVDWNDLHEMVTAACYT 658 (927)
Q Consensus 589 tV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~---t~------~~v~~~~~~~~V~sla~s 658 (927)
+|.||++. |+.+..+. ....-+..+.+| +|++|++++.---|++|.+- .| +...+.+|...|..++|+
T Consensus 210 ~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs 287 (420)
T KOG2096|consen 210 KICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS 287 (420)
T ss_pred cEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC
Confidence 99999999 88887776 555667788999 99999999999999999862 22 234567788899999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeeeecccccc--cccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc--e
Q 002407 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ--NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL--V 734 (927)
Q Consensus 659 pdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~--~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~--~ 734 (927)
++...+++.+.||+++|||+.-.-...+-+..+. .............+.++|.+. +++.+....|++|..... .
T Consensus 288 n~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~--~lA~s~gs~l~~~~se~g~~~ 365 (420)
T KOG2096|consen 288 NSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD--SLAVSFGSDLKVFASEDGKDY 365 (420)
T ss_pred CCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc--EEEeecCCceEEEEcccCccc
Confidence 9999999999999999999864322221111000 011123344455899999985 677777888999985432 2
Q ss_pred EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 735 HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 735 ~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
..+. ..+...|.+++|+++|+++++++ |..++++.-..
T Consensus 366 ~~~e-~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntp 403 (420)
T KOG2096|consen 366 PELE-DIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTP 403 (420)
T ss_pred hhHH-HhhcCceeeEEecCCCcEEeeec-ceeeeeecCCC
Confidence 2222 23567899999999999999997 67788876433
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-22 Score=205.01 Aligned_cols=269 Identities=19% Similarity=0.262 Sum_probs=215.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~ 534 (927)
-+..|..|.|+|.+..|+.++.||++++|++...+....+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~---------------------------------------- 51 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF---------------------------------------- 51 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe----------------------------------------
Confidence 4678999999999999999999999999998765332221
Q ss_pred cccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEE
Q 002407 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQ 614 (927)
Q Consensus 535 ~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~ 614 (927)
.|..++++++|.++..+++|+.||.|+++|+.++.....-.|...|.||.
T Consensus 52 ------------------------------~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~ 101 (323)
T KOG1036|consen 52 ------------------------------KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIE 101 (323)
T ss_pred ------------------------------ecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEE
Confidence 38889999999999999999999999999999999988888999999999
Q ss_pred EccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccc
Q 002407 615 FNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK 694 (927)
Q Consensus 615 fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~ 694 (927)
+.+ ....+++|++|++|++||.+....+..+.....|.++... |..|++|+.+..+.+||+++.....+.
T Consensus 102 ~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~------- 171 (323)
T KOG1036|consen 102 YSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQR------- 171 (323)
T ss_pred eec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhh-------
Confidence 999 7788999999999999999987776667777788887765 778999999999999999987654421
Q ss_pred cccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE--ECC----cceEEEEeecC-------CcceEEEEEecCCCEEEEE
Q 002407 695 KKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV--DGI----DLVHKFKGFRN-------TNSQISASLTANGRYVVSA 761 (927)
Q Consensus 695 ~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw--D~~----~~~~~~~~~~~-------~~~v~sv~fspdg~~Lasg 761 (927)
+.......+.++++.|.+. -+++++-||.|.+= |.. ...-.|+.|.. .-+|.+++|+|--..||||
T Consensus 172 reS~lkyqtR~v~~~pn~e-Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTg 250 (323)
T KOG1036|consen 172 RESSLKYQTRCVALVPNGE-GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATG 250 (323)
T ss_pred ccccceeEEEEEEEecCCC-ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEec
Confidence 1134556789999999655 58899999999884 432 22333444432 2467899999999999999
Q ss_pred ECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEec
Q 002407 762 SEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPW 804 (927)
Q Consensus 762 s~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~ 804 (927)
+.||.|.+||+.+.++...............|..++..+|++.
T Consensus 251 GsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 251 GSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred CCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 9999999999999887766655544455566666666666643
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=227.79 Aligned_cols=206 Identities=16% Similarity=0.237 Sum_probs=160.6
Q ss_pred ceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCc--------EEEEEe-cCCceEEEEEccCCCC-EEEEE
Q 002407 559 PICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT--------CLKIFS-HSDYVTCIQFNPVDDR-YFISG 626 (927)
Q Consensus 559 ~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~--------~~~~~~-h~~~V~~v~fsp~dg~-~L~sg 626 (927)
++..+.+|.+.|.+++|+|+ .+|++|+.|++|+|||+.++. ++..+. |...|.+++|+| ++. +|+++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P-~g~~iLaSg 144 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP-MNYYIMCSS 144 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC-CCCeEEEEE
Confidence 45677899999999999996 689999999999999998642 233444 899999999999 665 46789
Q ss_pred ECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEE-
Q 002407 627 SLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG- 705 (927)
Q Consensus 627 s~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts- 705 (927)
+.|++|+|||+.+++.+..+.++..|.+++|+|+|.+|++++.|+.|+|||++++..+..+ ..|...+..
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl---------~gH~g~~~s~ 215 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF---------HIHDGGKNTK 215 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE---------ecccCCceeE
Confidence 9999999999999887766667788999999999999999999999999999998877654 256554433
Q ss_pred ----EEEcCCCCcEEEEEECCC----cEEEEECCc---ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 706 ----FQFAPGSSSEVLVTSADS----RIRVVDGID---LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 706 ----l~fspdg~~~Llsgs~Dg----~I~VwD~~~---~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
..|++++. +|++++.|+ +|+|||.+. .+..+........+......++|.++++|+.|++|++|++..
T Consensus 216 ~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 216 NIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 23457765 677777664 799999764 333333333333333344455689999999999999999976
Q ss_pred C
Q 002407 775 E 775 (927)
Q Consensus 775 ~ 775 (927)
+
T Consensus 295 ~ 295 (568)
T PTZ00420 295 G 295 (568)
T ss_pred C
Confidence 5
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=210.54 Aligned_cols=273 Identities=21% Similarity=0.319 Sum_probs=216.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
-|.+.|.+|... +++++||+.||+++|||..
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~----------------------------------------------- 133 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK----------------------------------------------- 133 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-----------------------------------------------
Confidence 499999999998 7899999999999999963
Q ss_pred ccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC-C---cEEEEEeCCCcEEEEeCCCCcEEEE-----E
Q 002407 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-S---QHLLSSSMDKTVRLWHLSSKTCLKI-----F 604 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp-d---~~L~Sgs~DgtV~lWDl~t~~~~~~-----~ 604 (927)
++.+..+.||.++|..++|.. + ..|+++++|.++++|.++.+..... -
T Consensus 134 -----------------------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~ 190 (423)
T KOG0313|consen 134 -----------------------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCR 190 (423)
T ss_pred -----------------------CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhc
Confidence 245567789999999888853 3 4699999999999999887654321 1
Q ss_pred ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC--------------------------cEEEeccCCCcEEEEEEC
Q 002407 605 SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--------------------------QVVDWNDLHEMVTAACYT 658 (927)
Q Consensus 605 ~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--------------------------~~v~~~~~~~~V~sla~s 658 (927)
+|...|.+|...+ ++..+++|+.|.+|+||+.... .++....|.+.|.++.|+
T Consensus 191 GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~ 269 (423)
T KOG0313|consen 191 GHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS 269 (423)
T ss_pred ccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence 5999999999999 9999999999999999993210 123456777899999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc---ceE
Q 002407 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID---LVH 735 (927)
Q Consensus 659 pdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~---~~~ 735 (927)
+ ...+++++.|.+|+.||+.++...... .....++++..+|... +|++|+.|..|++||.+. -..
T Consensus 270 d-~~v~yS~SwDHTIk~WDletg~~~~~~----------~~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 270 D-ATVIYSVSWDHTIKVWDLETGGLKSTL----------TTNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred C-CCceEeecccceEEEEEeecccceeee----------ecCcceeEeecccccc-eeeecCCCCceeecCCCCCCCcee
Confidence 8 668999999999999999999887763 4567899999999765 899999999999999653 233
Q ss_pred EEEeecCCcceEEEEEecCCC-EEEEEECCCcEEEEECCCCCCcc-cccccceeeeeeeecCCCeEEEEecCCc-eeEEe
Q 002407 736 KFKGFRNTNSQISASLTANGR-YVVSASEDSYVYVWKYEAESRPS-RSKSITVTHSYEHFHCQDVSVAIPWPGV-GDTWG 812 (927)
Q Consensus 736 ~~~~~~~~~~v~sv~fspdg~-~Lasgs~Dg~I~IWdl~s~~~~~-~~~~~~~~~~~~~~~~~~v~vavs~~g~-~~i~~ 812 (927)
.+....|...|.++.|+|... .|++++.|+++++||+++...|. .+. -| ++-.+++-|... ..+.+
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~----------~h-~DKvl~vdW~~~~~IvSG 406 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA----------GH-NDKVLSVDWNEGGLIVSG 406 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec----------cC-CceEEEEeccCCceEEec
Confidence 334444567899999999664 57899999999999999876332 111 11 456778888855 45566
Q ss_pred ecCCceeecc
Q 002407 813 LQDTYLDEFS 822 (927)
Q Consensus 813 ~~d~~i~~~~ 822 (927)
..|.+++.+.
T Consensus 407 GaD~~l~i~~ 416 (423)
T KOG0313|consen 407 GADNKLRIFK 416 (423)
T ss_pred cCcceEEEec
Confidence 7777766654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-21 Score=188.70 Aligned_cols=251 Identities=22% Similarity=0.320 Sum_probs=203.5
Q ss_pred eeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
..++.-+.|++.|.|.+|+|+|.+||||+.|.+|++--+....+...
T Consensus 80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~--------------------------------- 126 (350)
T KOG0641|consen 80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT--------------------------------- 126 (350)
T ss_pred EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc---------------------------------
Confidence 34456678999999999999999999999999999987654321110
Q ss_pred eeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC----cE-EEEE-eCCCcEEEEeCCCCcE
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS----QH-LLSS-SMDKTVRLWHLSSKTC 600 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd----~~-L~Sg-s~DgtV~lWDl~t~~~ 600 (927)
.+-..|..|.+.|.+++|..+ +. |+++ ..|..|++-|..+++.
T Consensus 127 -------------------------------g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 127 -------------------------------GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG 175 (350)
T ss_pred -------------------------------CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc
Confidence 122356679999999999754 33 4444 3577888889999999
Q ss_pred EEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC--------CcEEEEEECCCCCEEEEEECCC
Q 002407 601 LKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH--------EMVTAACYTPDGQGALVGSYKG 671 (927)
Q Consensus 601 ~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~--------~~V~sla~spdg~~l~tgs~Dg 671 (927)
.+.+. |++-|.++--- ++-+|++|+.|.+|++||++-..++...+.. ..|.+++..|.|++|++|-.|.
T Consensus 176 ~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds 253 (350)
T KOG0641|consen 176 FHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS 253 (350)
T ss_pred ceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence 88887 99999887432 6889999999999999999988877654432 4799999999999999999999
Q ss_pred eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc----ceEEEEeecCCcceE
Q 002407 672 SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID----LVHKFKGFRNTNSQI 747 (927)
Q Consensus 672 ~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~----~~~~~~~~~~~~~v~ 747 (927)
.+.+||++.++.++.+ ..|...|.++.|+|.- .++++++.|..|++-|+.. .+.......+...++
T Consensus 254 sc~lydirg~r~iq~f---------~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i 323 (350)
T KOG0641|consen 254 SCMLYDIRGGRMIQRF---------HPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAI 323 (350)
T ss_pred ceEEEEeeCCceeeee---------CCCccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcCceEEEEeccCceE
Confidence 9999999999998876 4899999999999964 5899999999999999532 223333345667788
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECC
Q 002407 748 SASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 748 sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
.+.|+|..--+++.+.|.++.+|-+.
T Consensus 324 ~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 324 QCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEecCccceeeeccCcceEEEeccC
Confidence 99999999999999999999999874
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-21 Score=216.67 Aligned_cols=436 Identities=16% Similarity=0.206 Sum_probs=295.5
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCC---EEEEEeCCCcEEEEecCcCcccceeec
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR---YLASAGEDCVIHVWQVVESERKGELLE 496 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~---~LaSgs~DgtVrVWdv~~~~~~~~l~~ 496 (927)
...+++.|..+..|.+|.-... ......+|.||++.|.+|+|..-+. +|||+|+|..||||.+.-.........
T Consensus 158 ~~~lla~Ggs~~~v~~~s~~~d---~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~ 234 (764)
T KOG1063|consen 158 KTFLLACGGSKFVVDLYSSSAD---SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNER 234 (764)
T ss_pred CcEEEEecCcceEEEEeccCCc---ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccc
Confidence 3344788999999999987755 3445568999999999999987554 899999999999999864432211100
Q ss_pred ccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEec
Q 002407 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (927)
Q Consensus 497 ~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~s 576 (927)
.. ..+..++....... . +..+. -.....+.||.+.|.++.|+
T Consensus 235 e~---------~~t~~~~~~~f~~l----------------------~-----~i~~~--is~eall~GHeDWV~sv~W~ 276 (764)
T KOG1063|consen 235 ED---------SLTTLSNLPVFMIL----------------------E-----EIQYR--ISFEALLMGHEDWVYSVWWH 276 (764)
T ss_pred cc---------ccccccCCceeeee----------------------e-----eEEEE--EehhhhhcCcccceEEEEEc
Confidence 00 00000000000000 0 00000 01112356999999999999
Q ss_pred CCc-EEEEEeCCCcEEEEeCCCCcE--EEEE--e----cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC----cEE
Q 002407 577 KSQ-HLLSSSMDKTVRLWHLSSKTC--LKIF--S----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER----QVV 643 (927)
Q Consensus 577 pd~-~L~Sgs~DgtV~lWDl~t~~~--~~~~--~----h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~----~~v 643 (927)
|.+ .|++++.|+++.+|......- +... + .........|+| +++.+++-+.-|..++|...+. +..
T Consensus 277 p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~ 355 (764)
T KOG1063|consen 277 PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEP 355 (764)
T ss_pred cchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCccceeecc
Confidence 995 799999999999998876532 2222 2 244588999999 9999999999999999983332 122
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC
Q 002407 644 DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (927)
Q Consensus 644 ~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg 723 (927)
..-+|-+.|+.++|.|.|.+|++.+.|.+-|+|-.-..+.. - ....+...|...++|++|-+. +..+++|....
T Consensus 356 ~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~-w----HEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEK 429 (764)
T KOG1063|consen 356 VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE-W----HEIARPQIHGYDLTCLSFVNE-DLQFVSGADEK 429 (764)
T ss_pred ccccccccceeeeecCCCCEEEEeccccceeeecccccccc-e----eeecccccccccceeeehccC-Cceeeecccce
Confidence 34566689999999999999999999999999876522221 1 122334579999999999985 44788888889
Q ss_pred cEEEEECC----------------------------------c-c--------------e--------------------
Q 002407 724 RIRVVDGI----------------------------------D-L--------------V-------------------- 734 (927)
Q Consensus 724 ~I~VwD~~----------------------------------~-~--------------~-------------------- 734 (927)
.+|+|+.. + . .
T Consensus 430 VlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqL 509 (764)
T KOG1063|consen 430 VLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQL 509 (764)
T ss_pred eeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHH
Confidence 99999700 0 0 0
Q ss_pred -------EEEEeecCCcceEEEEEecCCCEEEEEECC-----CcEEEEECCCCCCcccccccceeeeeeeecCCCe-EEE
Q 002407 735 -------HKFKGFRNTNSQISASLTANGRYVVSASED-----SYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDV-SVA 801 (927)
Q Consensus 735 -------~~~~~~~~~~~v~sv~fspdg~~Lasgs~D-----g~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v-~va 801 (927)
..-+.+.|...|.+++.+|+|++||+++.. ..|++|+..+-.....+..+........|++++. .++
T Consensus 510 q~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLs 589 (764)
T KOG1063|consen 510 QQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLS 589 (764)
T ss_pred HHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEE
Confidence 000112355678999999999999999754 3499999999887777888888888888888764 444
Q ss_pred EecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhcc---
Q 002407 802 IPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL--- 878 (927)
Q Consensus 802 vs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~--- 878 (927)
++-+-+..+|..+......+.-.. .......+-.+.|+|++.++|+++ .|+.+.+|.+...+.
T Consensus 590 vsRDRt~sl~~~~~~~~~e~~fa~----------~k~HtRIIWdcsW~pde~~FaTaS----RDK~VkVW~~~~~~d~~i 655 (764)
T KOG1063|consen 590 VSRDRTVSLYEVQEDIKDEFRFAC----------LKAHTRIIWDCSWSPDEKYFATAS----RDKKVKVWEEPDLRDKYI 655 (764)
T ss_pred eecCceEEeeeeecccchhhhhcc----------ccccceEEEEcccCcccceeEEec----CCceEEEEeccCchhhhh
Confidence 666666777776554443333111 111224445567999999999988 899999998875511
Q ss_pred ----ccccCCCceecccCCCCCcccCCCCC-EEEEEcCCCcEEEeecC
Q 002407 879 ----TARNRSPRTSLDISNGISSSISAWGM-VIVTAGLRGEIRAYQNF 921 (927)
Q Consensus 879 ----~~~~~s~v~s~~~~~~~~~a~S~dG~-vLvTgs~DG~IrvW~~~ 921 (927)
...+..+++.+.+. ..+.+... +++.|-+-|.|-+|+-+
T Consensus 656 ~~~a~~~~~~aVTAv~~~----~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 656 SRFACLKFSLAVTAVAYL----PVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hhhchhccCCceeeEEee----ccccccccceEEEEecccEEEEEecc
Confidence 12334444443222 22333333 77888888999999944
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=225.89 Aligned_cols=205 Identities=21% Similarity=0.328 Sum_probs=178.4
Q ss_pred eEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC--cEEEEEe-cCCceEEEEE-ccCCCCEEEEEECCCcEEE
Q 002407 560 ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK--TCLKIFS-HSDYVTCIQF-NPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 560 i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~--~~~~~~~-h~~~V~~v~f-sp~dg~~L~sgs~Dg~I~I 634 (927)
+..++.|.+.|.++....+ +.|+++|.|-+|++|+...+ -|+.++. |.++|.|+++ -+ +..++++|+.|+.|.+
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~Ifl 144 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRKIFL 144 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCCCccEEE
Confidence 4466789999999999887 58999999999999999877 5677776 9999999999 55 8889999999999999
Q ss_pred EeCCCCc--EEE---------ec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCC
Q 002407 635 WSIPERQ--VVD---------WN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (927)
Q Consensus 635 WDl~t~~--~v~---------~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (927)
||+.++. ++. .. ++...|.+++.++.|..|+.|+..+.|++||.++++.+..+ ++|...
T Consensus 145 WDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkL---------rGHTdN 215 (735)
T KOG0308|consen 145 WDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKL---------RGHTDN 215 (735)
T ss_pred EEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeee---------eccccc
Confidence 9999772 221 12 45578999999999999999999999999999998877664 599999
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 703 ITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 703 Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|..+..+++|. .+++++.||+|++||++...+....+.|...++++..+|+-.++++|+.||.|+.=|+.+.
T Consensus 216 Vr~ll~~dDGt-~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 216 VRVLLVNDDGT-RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eEEEEEcCCCC-eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999987 7999999999999998776666666666777999999999999999999999999999985
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=203.12 Aligned_cols=203 Identities=21% Similarity=0.372 Sum_probs=176.2
Q ss_pred EEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceEEEEEccCCCCEEEEEECCCcEEEEe
Q 002407 561 CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWS 636 (927)
Q Consensus 561 ~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWD 636 (927)
+.+++|...|..++|.-+ .+|++++.|+++.+|++.......... |.+.|-.++|+|...++|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 567889999999999998 679999999999999999876555443 9999999999998999999999999999999
Q ss_pred CCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEE
Q 002407 637 IPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEV 716 (927)
Q Consensus 637 l~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~L 716 (927)
++.+++.........-.-++|+|+|++++++..|..|.+.|.++.+.....+ ....+..+.|+-++. ++
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~----------~~~e~ne~~w~~~nd-~F 162 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ----------FKFEVNEISWNNSND-LF 162 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc----------ccceeeeeeecCCCC-EE
Confidence 9999998877777766778999999999999999999999999988877643 345577888886555 78
Q ss_pred EEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 717 LVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 717 lsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+.....|.|.|.....+........|.....++.|+|+|+|+|+|+.|..+-+||++.
T Consensus 163 flt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E 220 (313)
T KOG1407|consen 163 FLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE 220 (313)
T ss_pred EEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH
Confidence 8888889999988666666666666778899999999999999999999999999975
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.9e-22 Score=202.99 Aligned_cols=277 Identities=15% Similarity=0.209 Sum_probs=222.2
Q ss_pred cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcC-cccceeecccccCccccEEEEccCCCCCeecccccCCceeeec
Q 002407 454 AHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVES-ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (927)
Q Consensus 454 gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~-~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~ 531 (927)
.-.+.|.+|+||| ...+|+.++.|++||+|++... .... .....+..+++.++|+.++..++.++.++..
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~----ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~---- 96 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP----KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQA---- 96 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc----hhhhccCCCeEEEEEccCCceEEeeccCCce----
Confidence 4578999999999 5556778999999999999874 3222 3345677899999999999999999888877
Q ss_pred ccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCcEEEEEecCC
Q 002407 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTCLKIFSHSD 608 (927)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~ 608 (927)
++|++....+..+..|.++|..+.|-+. ..|+|||.|++|++||++...++.++....
T Consensus 97 -------------------k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe 157 (347)
T KOG0647|consen 97 -------------------KLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE 157 (347)
T ss_pred -------------------EEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc
Confidence 7888888888999999999999999876 479999999999999999999999999999
Q ss_pred ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE---eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD---WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 609 ~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~---~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
.|+++..- ..+++.+..+..|.+|+++.+.... .-..+-.+.+++..+|....+.|+-+|.+.|..+..+....
T Consensus 158 RvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 158 RVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKD 234 (347)
T ss_pred eeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccC
Confidence 99998873 4588889999999999997764332 22345689999999999999999999999999998864444
Q ss_pred ecccccccccc--cCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEE
Q 002407 686 KSPINLQNKKK--RSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 686 ~~~i~~~~~~~--~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasg 761 (927)
.+.+....... ...-..|++|+|+|.-. .|++.+.||++.+||............+..+|++.+|+.+|.++|-+
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 44433222111 11134578899999755 79999999999999965444444445678899999999999988755
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-22 Score=205.76 Aligned_cols=302 Identities=16% Similarity=0.217 Sum_probs=226.9
Q ss_pred eeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc---cccee----------ecccccCccccEEEEccCC
Q 002407 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE---RKGEL----------LEKQEDGHLNMLLLANGSP 513 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~---~~~~l----------~~~~~~~~~~~v~~v~~sp 513 (927)
+....+..|++++.+.+|+|||.++|||+.|..|+|.|++..- ...++ .....-.|...|..+.|.|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 3345578899999999999999999999999999999997210 11111 1112235678888999999
Q ss_pred CCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEE
Q 002407 514 EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRL 592 (927)
Q Consensus 514 d~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~l 592 (927)
...+|+++..++.+......+... |.....-....+|.+|.|+|. .+|+.|..--++++
T Consensus 183 re~ILiS~srD~tvKlFDfsK~sa--------------------KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSA--------------------KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHH--------------------HHHHHHhhccceeeeEeecCCCceEEEecCCCceeE
Confidence 999999999999884333222111 111112234568999999999 67888888889999
Q ss_pred EeCCCCcEEEEEe----cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC---CCcEEEEEECCCCCEEE
Q 002407 593 WHLSSKTCLKIFS----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL---HEMVTAACYTPDGQGAL 665 (927)
Q Consensus 593 WDl~t~~~~~~~~----h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~---~~~V~sla~spdg~~l~ 665 (927)
||+.+-+|...-. |+..|+++.+++ .+++.++++.||.|+|||--+++++..+.. ...|.++.|..+|++++
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiL 321 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYIL 321 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEe
Confidence 9999998876543 999999999999 999999999999999999888888765432 35899999999999999
Q ss_pred EEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce-EEEEeecCCc
Q 002407 666 VGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV-HKFKGFRNTN 744 (927)
Q Consensus 666 tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~-~~~~~~~~~~ 744 (927)
+.+.|..+++|.+.+++.+..+.-.... +...--+...|+.....+|+---..+.+.-||.++.- ..+....|.+
T Consensus 322 sSG~DS~vkLWEi~t~R~l~~YtGAg~t----grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~ 397 (430)
T KOG0640|consen 322 SSGKDSTVKLWEISTGRMLKEYTGAGTT----GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNG 397 (430)
T ss_pred ecCCcceeeeeeecCCceEEEEecCCcc----cchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCC
Confidence 9999999999999999998876432111 1111123334555544344444456788999966432 2333446788
Q ss_pred ceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 745 SQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 745 ~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
.+..+.-+|.+.-+++++.|-.+++|--+
T Consensus 398 a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 398 AVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CceEEEeCCCCCceeeecccceeeeeeec
Confidence 89999999999999999999999999654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-23 Score=217.83 Aligned_cols=285 Identities=18% Similarity=0.205 Sum_probs=218.1
Q ss_pred CceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 558 KPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
..+..|.||.+.|.||+=+|. ..+++|+.||.|+|||+.+..++.+|. |.+.|..|++.. ..+++++.|.+|+.
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQ 133 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceee
Confidence 456678999999999999998 579999999999999999999999998 999999999964 67889999999999
Q ss_pred EeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 635 WSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 635 WDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
|.+... .+..+.....+..+.-+..+..+++++. .|.|||..-...+..+. -....|.++.|+|....
T Consensus 134 wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sms---------wG~Dti~svkfNpvETs 201 (433)
T KOG0268|consen 134 WKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMS---------WGADSISSVKFNPVETS 201 (433)
T ss_pred eeccCC-cceeeeccccccccccccccccccccCc--eeeecccccCCccceee---------cCCCceeEEecCCCcch
Confidence 998763 5566666677777777777778888764 59999998777776654 34567999999998888
Q ss_pred EEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeec
Q 002407 715 EVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFH 794 (927)
Q Consensus 715 ~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~ 794 (927)
+|++++.|+.|.|||.+.....-+.. ....-..++|+|.+--+++|++|.++|.||++....|... +
T Consensus 202 ILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v------------~ 268 (433)
T KOG0268|consen 202 ILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV------------H 268 (433)
T ss_pred heeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchh------------h
Confidence 88889999999999965432221111 1223457899998888999999999999999876544321 0
Q ss_pred CCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCch
Q 002407 795 CQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEE 874 (927)
Q Consensus 795 ~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e 874 (927)
. .|...+ ..+.|||.|+-+++++ .|++|++++..
T Consensus 269 ~------------------------------dhvsAV------------~dVdfsptG~Efvsgs----yDksIRIf~~~ 302 (433)
T KOG0268|consen 269 K------------------------------DHVSAV------------MDVDFSPTGQEFVSGS----YDKSIRIFPVN 302 (433)
T ss_pred c------------------------------ccceeE------------EEeccCCCcchhcccc----ccceEEEeecC
Confidence 0 111111 2245999999999988 99999999975
Q ss_pred hhccccccCCCceecc-cCCCCCcccCCCCCEEEEEcCCCcEEEeecC
Q 002407 875 KLVLTARNRSPRTSLD-ISNGISSSISAWGMVIVTAGLRGEIRAYQNF 921 (927)
Q Consensus 875 ~l~~~~~~~s~v~s~~-~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~~ 921 (927)
.. |+..+-... +-+-.++.||.|.++|++|++||.||+|+.+
T Consensus 303 ~~-----~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 303 HG-----HSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred CC-----cchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 43 222221111 0111168999999999999999999999965
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=209.40 Aligned_cols=268 Identities=21% Similarity=0.295 Sum_probs=225.4
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
...+.+|..+..+-+|++.+.++.. .|+||...|+.+.|+|+...+++++.|-.|+||.+.....
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~-----~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---------- 295 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILA-----TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---------- 295 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhh-----hccCcceEEEEEEeccchhheeecCCcceEEeeccccccC----------
Confidence 4667899999999999998887654 4589999999999999999999999999999998754331
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-c
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q 579 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~ 579 (927)
......|..+|+.+..+|. .
T Consensus 296 -----------------------------------------------------------~~~~~~h~~~V~~ls~h~tge 316 (506)
T KOG0289|consen 296 -----------------------------------------------------------PTSSRPHEEPVTGLSLHPTGE 316 (506)
T ss_pred -----------------------------------------------------------ccccccccccceeeeeccCCc
Confidence 1123459999999999998 8
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEecC---CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEE
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHS---DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAA 655 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~h~---~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sl 655 (927)
+|++++.|++..+.|+.++.++....+. -.+++++|+| ||.+|.+|..|+.|+|||+..+..+. +..|...|..+
T Consensus 317 YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i 395 (506)
T KOG0289|consen 317 YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAI 395 (506)
T ss_pred EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEE
Confidence 9999999999999999999998888764 3489999999 99999999999999999999887665 45566899999
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC--Ccc
Q 002407 656 CYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDL 733 (927)
Q Consensus 656 a~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~--~~~ 733 (927)
+|+.+|-+|++++.|+.|++||++..+...++++ .....+.++.|.+.|. +|++++.|=+|++++. ...
T Consensus 396 ~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l--------~~~~~v~s~~fD~SGt-~L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 396 SFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL--------DEKKEVNSLSFDQSGT-YLGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred EeccCceEEEEEecCCeEEEEEehhhcccceeec--------cccccceeEEEcCCCC-eEEeecceeEEEEEecccccc
Confidence 9999999999999999999999998887666653 3344799999999987 7888888888888872 233
Q ss_pred eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 734 VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 734 ~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
......+.+.+..+.+.|....+++++++.|..++++.+
T Consensus 467 ~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 467 TEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 343444445567888999999999999999999998865
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.7e-21 Score=217.01 Aligned_cols=434 Identities=15% Similarity=0.146 Sum_probs=305.3
Q ss_pred EEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCcc
Q 002407 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (927)
Q Consensus 424 ~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~ 503 (927)
+..|...|++.+||..++.+. .++++|...|+++.=+|--..+|.|..+|+|.|+++..++.+..+.. ..
T Consensus 175 IvvGs~~G~lql~Nvrt~K~v-----~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~-----d~ 244 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKVV-----YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQ-----DW 244 (910)
T ss_pred EEEeecCCcEEEEEeccCcEE-----EEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEc-----cc
Confidence 788999999999998877653 56689999999999999888999999999999999999998888742 25
Q ss_pred ccEEEEccCCCCCeec-ccccCCceeeecccccccccccccCcccccceEeecCCCceEE--EccCCCCEEEEEecCC-c
Q 002407 504 NMLLLANGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS--FQGHLDDVLDLSWSKS-Q 579 (927)
Q Consensus 504 ~~v~~v~~spd~~~la-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~--l~gH~~~V~~l~~spd-~ 579 (927)
..|..++|.-||..+. ++...+.+ .+|++..+.+.. ...|.+.|..+.|.+. .
T Consensus 245 g~VtslSFrtDG~p~las~~~~G~m-----------------------~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep 301 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASGRSNGDM-----------------------AFWDLEKKKLINVTRNAHYGSVTGATFLPGEP 301 (910)
T ss_pred cceeEEEeccCCCeeEEeccCCceE-----------------------EEEEcCCCeeeeeeeccccCCcccceecCCCc
Confidence 7889999999976554 44444655 567777665543 3479999999999998 8
Q ss_pred EEEEEeCCCcEEEEeCCCCc----EEEEE-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc----EEE------
Q 002407 580 HLLSSSMDKTVRLWHLSSKT----CLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ----VVD------ 644 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~----~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~----~v~------ 644 (927)
.|++++.|+.+++|=.+++. .++.- +|..+..||.|.-..+.++++++.|++++.+++.... +.+
T Consensus 302 Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~ 381 (910)
T KOG1539|consen 302 VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR 381 (910)
T ss_pred eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence 89999999999988666443 22222 3999999999996689999999999999998874321 111
Q ss_pred -----eccC----CCcEEEEEECCC-----CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 645 -----WNDL----HEMVTAACYTPD-----GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 645 -----~~~~----~~~V~sla~spd-----g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
...+ -.+|..+++... .+.+++--.+..++.|++++...-... +...+++.....+++++.++
T Consensus 382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~---L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV---LDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE---ecCccccccCcceEEEEEec
Confidence 1100 135666666532 234555555677999999876552211 11222334567899999999
Q ss_pred CCCcEEEEEECCCcEEEEECCcceEEEEe---ecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccccccccee
Q 002407 711 GSSSEVLVTSADSRIRVVDGIDLVHKFKG---FRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVT 787 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~VwD~~~~~~~~~~---~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~ 787 (927)
-|+ +.++|...|.|-+|+....+..-.. ..+..+|+.++...-++.+++++.+|.+++|++.........+- ...
T Consensus 459 CGN-F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~ 536 (910)
T KOG1539|consen 459 CGN-FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSS 536 (910)
T ss_pred cCc-eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCC
Confidence 876 8999999999999998776655444 46788999999999999999999999999999998664333221 111
Q ss_pred eeeeeecCCCeEEEEecC-CceeEEeecCCc-eeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccC
Q 002407 788 HSYEHFHCQDVSVAIPWP-GVGDTWGLQDTY-LDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFD 865 (927)
Q Consensus 788 ~~~~~~~~~~v~vavs~~-g~~~i~~~~d~~-i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d 865 (927)
.....+|-..-.+++..+ -.+.+++..-.. .+++ .+|. .-++.++|||||++|++++ .|
T Consensus 537 ~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f---~gh~------------nritd~~FS~DgrWlisas----mD 597 (910)
T KOG1539|consen 537 ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF---WGHG------------NRITDMTFSPDGRWLISAS----MD 597 (910)
T ss_pred cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh---hccc------------cceeeeEeCCCCcEEEEee----cC
Confidence 222223322222233322 222333322221 1222 2222 2234567999999999998 88
Q ss_pred ccccccCchhhcccc--ccCCCceecccCCCCCcccCCCCCEEEEEcCC-CcEEEeecCC
Q 002407 866 RISATWPEEKLVLTA--RNRSPRTSLDISNGISSSISAWGMVIVTAGLR-GEIRAYQNFG 922 (927)
Q Consensus 866 ~~v~~W~~e~l~~~~--~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~D-G~IrvW~~~g 922 (927)
.++++|+........ ....+.. .+.|||+|.+|||+..| .-|-+|-|-.
T Consensus 598 ~tIr~wDlpt~~lID~~~vd~~~~--------sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 598 STIRTWDLPTGTLIDGLLVDSPCT--------SLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CcEEEEeccCcceeeeEecCCcce--------eeEECCCCCEEEEEEecCceEEEEEchh
Confidence 999999975332211 1112222 47999999999999999 7799998743
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=227.55 Aligned_cols=272 Identities=19% Similarity=0.330 Sum_probs=215.6
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
.|...|.+..|. ..++++++.|.+|++|+..++..+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i------------------------------------------ 241 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLI------------------------------------------ 241 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEE------------------------------------------
Confidence 367788999998 558999999999999998665322
Q ss_pred ccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC-CcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceE
Q 002407 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-SQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVT 611 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp-d~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~ 611 (927)
...+.||.+.|+++++.. +.+|++|+.|.++++||..+++|..++. |...|.
T Consensus 242 --------------------------~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~ 295 (537)
T KOG0274|consen 242 --------------------------LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVR 295 (537)
T ss_pred --------------------------EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEE
Confidence 123679999999999976 4899999999999999999999999998 999999
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccc
Q 002407 612 CIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN 690 (927)
Q Consensus 612 ~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~ 690 (927)
++... ..++++|+.|.+|++|++.++.++..+. |...|.++.+. +.++++|+.|++|++||+.+++++..+
T Consensus 296 ~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl--- 367 (537)
T KOG0274|consen 296 CLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSL--- 367 (537)
T ss_pred EEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeee---
Confidence 99985 4778889999999999999999999887 88999999998 889999999999999999999998886
Q ss_pred cccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc-eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEE
Q 002407 691 LQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL-VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYV 769 (927)
Q Consensus 691 ~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~-~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~I 769 (927)
.+|...|+++.+.+. ..+++|+.|++|++||.... ........+..-+..+ ...+++|++++.|+.|++
T Consensus 368 ------~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l--~~~~~~Lvs~~aD~~Ik~ 437 (537)
T KOG0274|consen 368 ------SGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL--LLRDNFLVSSSADGTIKL 437 (537)
T ss_pred ------cCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc--ccccceeEeccccccEEE
Confidence 489999999988874 38999999999999997655 3333333334444333 356789999999999999
Q ss_pred EECCCCCCccccccc-ceeeeeeeecCCCeEEEEecCCceeEEeec
Q 002407 770 WKYEAESRPSRSKSI-TVTHSYEHFHCQDVSVAIPWPGVGDTWGLQ 814 (927)
Q Consensus 770 Wdl~s~~~~~~~~~~-~~~~~~~~~~~~~v~vavs~~g~~~i~~~~ 814 (927)
||..+++........ ........+. +...++..-++...+|...
T Consensus 438 WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 438 WDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred eecccCceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecc
Confidence 999998776655442 1111211111 2334444455555555443
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-22 Score=215.24 Aligned_cols=299 Identities=17% Similarity=0.227 Sum_probs=213.3
Q ss_pred CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcE----EEEEe--cCCceEEEEEccCCCCEEEEEECC
Q 002407 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC----LKIFS--HSDYVTCIQFNPVDDRYFISGSLD 629 (927)
Q Consensus 557 ~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~----~~~~~--h~~~V~~v~fsp~dg~~L~sgs~D 629 (927)
......+.+|+..|.++++.|. -+|++|+.|-+|++||+..... .+.+. ....|.+++|++ ++..|++.+..
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGS 235 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecC
Confidence 3445678899999999999998 6899999999999999975422 22222 567899999999 88888888888
Q ss_pred CcEEEEeCCCCcEEEe-------------ccCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCCeeeeeccccccccc
Q 002407 630 AKVRIWSIPERQVVDW-------------NDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK 695 (927)
Q Consensus 630 g~I~IWDl~t~~~v~~-------------~~~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~ 695 (927)
...+|+|-...+++.. .+|-..+++.+|+|+. ..|++++.||+++|||+...+...... ..+.
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi---k~k~ 312 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI---KTKP 312 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE---eecc
Confidence 9999999776555433 3344679999999965 468999999999999998765433221 1111
Q ss_pred ccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-----ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEE
Q 002407 696 KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-----LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVW 770 (927)
Q Consensus 696 ~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-----~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IW 770 (927)
..+..-.++.++|+++++ +|++|+.||.|.+|+.+. ....-..|.....|+++.||+||++|++-+.|+++++|
T Consensus 313 ~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVW 391 (641)
T ss_pred CCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeee
Confidence 234556789999999998 699999999999999432 23344455556689999999999999999999999999
Q ss_pred ECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecC
Q 002407 771 KYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSP 850 (927)
Q Consensus 771 dl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSP 850 (927)
||+...++.... . +-+.+ ...+.++|||
T Consensus 392 DLrq~kkpL~~~----------------------t--------------------gL~t~----------~~~tdc~FSP 419 (641)
T KOG0772|consen 392 DLRQFKKPLNVR----------------------T--------------------GLPTP----------FPGTDCCFSP 419 (641)
T ss_pred eccccccchhhh----------------------c--------------------CCCcc----------CCCCccccCC
Confidence 999866543210 0 00111 2234567999
Q ss_pred CCCeEEEeccccccC--ccccccCchhhccccccCCCceecccCCCC--CcccCCCCCEEEEEcCCCcEEEee
Q 002407 851 LNGTISSATNSYFFD--RISATWPEEKLVLTARNRSPRTSLDISNGI--SSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 851 dg~~Lasas~~~~~d--~~v~~W~~e~l~~~~~~~s~v~s~~~~~~~--~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
+.++|+++...-... +.+.+++.-++.. +..+++.... .+.|+|-=+.|..|+.||+++||.
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~-------v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDT-------VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CceEEEecccccCCCCCceEEEEeccceee-------EEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 999999977322221 2233333322211 1111111111 578999888888888899999986
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-19 Score=205.00 Aligned_cols=459 Identities=16% Similarity=0.146 Sum_probs=288.5
Q ss_pred eeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccce
Q 002407 415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (927)
Q Consensus 415 sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~-~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~ 493 (927)
.|.......++.+..++.|.+|+... ..++...|.+|+ +.|-.++|+ ++..|++.+.+|.|.-||+.+.+.+..
T Consensus 31 lA~s~kS~~lAvsRt~g~IEiwN~~~----~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~ 105 (691)
T KOG2048|consen 31 LAYSHKSNQLAVSRTDGNIEIWNLSN----NWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYN 105 (691)
T ss_pred EEEeccCCceeeeccCCcEEEEccCC----CceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEE
Confidence 33333344578899999999999876 445556777774 689999999 455788999999999999999987776
Q ss_pred eecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEE
Q 002407 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (927)
Q Consensus 494 l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l 573 (927)
+ ......+++++.+|....++.+..++.+.....+. +.+ ..-..|.-.++.|.++
T Consensus 106 ~-----d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p---------~~I-----------~~~r~l~rq~sRvLsl 160 (691)
T KOG2048|consen 106 I-----DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGP---------DKI-----------TYKRSLMRQKSRVLSL 160 (691)
T ss_pred e-----cCCCcceeEEEeCCccceEEeecCCceEEEEecCC---------ceE-----------EEEeecccccceEEEE
Confidence 5 45668899999999999999987777553222111 000 1122344557899999
Q ss_pred EecCCcE-EEEEeCCCcEEEEeCCCCcEEEEEe---------cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE
Q 002407 574 SWSKSQH-LLSSSMDKTVRLWHLSSKTCLKIFS---------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (927)
Q Consensus 574 ~~spd~~-L~Sgs~DgtV~lWDl~t~~~~~~~~---------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v 643 (927)
+|+|++. |++|+.||.|++||+..+..+.... ..--|+++.|-. ...|++|..-|+|.+||...+.++
T Consensus 161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTLI 238 (691)
T ss_pred EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCcchh
Confidence 9999954 9999999999999999998877332 223578888874 557999999999999999999988
Q ss_pred Ee-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC
Q 002407 644 DW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (927)
Q Consensus 644 ~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D 722 (927)
+. .-|...|.+++..+++.++++++.|+.|..|...++.... .....+..|...|.+++..++ .+++|+.|
T Consensus 239 qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~w-----v~~~~r~~h~hdvrs~av~~~---~l~sgG~d 310 (691)
T KOG2048|consen 239 QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEW-----VINSRRDLHAHDVRSMAVIEN---ALISGGRD 310 (691)
T ss_pred hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccce-----eeeccccCCcccceeeeeecc---eEEeccee
Confidence 74 4456799999999999999999999999999887765421 122334688899999999885 79999999
Q ss_pred CcEEEEECCcceEEEEeecCCcceEE-EEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEE
Q 002407 723 SRIRVVDGIDLVHKFKGFRNTNSQIS-ASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVA 801 (927)
Q Consensus 723 g~I~VwD~~~~~~~~~~~~~~~~v~s-v~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~va 801 (927)
..+.+-................+..+ +...+. ++|+.-=.+..+.+|.+.+..................-+..-...+
T Consensus 311 ~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~-~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~a 389 (691)
T KOG2048|consen 311 FTLAICSSREFKNMDHRQKNLFPASDRVSVAPE-NRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAA 389 (691)
T ss_pred eEEEEccccccCchhhhccccccccceeecCcc-ceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeec
Confidence 99998764431111111111111111 222333 3444444566688888877633322111111111111111122334
Q ss_pred EecCCceeEEe-ecCCceeeccccCCCCCcceeccCC-CcccCcceeeecCCCCeEEEeccccccCccccccCchhhcc-
Q 002407 802 IPWPGVGDTWG-LQDTYLDEFSTANHPPTPVEEISGN-EDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL- 878 (927)
Q Consensus 802 vs~~g~~~i~~-~~d~~i~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~- 878 (927)
++.+|....+. +..-.++.+.... ...+..+... .....+..+.|+-|+..++..+. ......+..+++...
T Consensus 390 iSPdg~~Ia~st~~~~~iy~L~~~~--~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~---~~~~le~~el~~ps~k 464 (691)
T KOG2048|consen 390 ISPDGNLIAISTVSRTKIYRLQPDP--NVKVINVDDVPLALLDASAISFTIDKNKLFLVSK---NIFSLEEFELETPSFK 464 (691)
T ss_pred cCCCCCEEEEeeccceEEEEeccCc--ceeEEEeccchhhhccceeeEEEecCceEEEEec---ccceeEEEEecCcchh
Confidence 44445443332 2222222222111 0000000000 11134445678888887777651 111122222221100
Q ss_pred -ccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeecCC
Q 002407 879 -TARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNFG 922 (927)
Q Consensus 879 -~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~~g 922 (927)
+...+.....-.++ .++.|+||++||.++.+|.|.+|.--+
T Consensus 465 el~~~~~~~~~~~I~---~l~~SsdG~yiaa~~t~g~I~v~nl~~ 506 (691)
T KOG2048|consen 465 ELKSIQSQAKCPSIS---RLVVSSDGNYIAAISTRGQIFVYNLET 506 (691)
T ss_pred hhhccccccCCCcce---eEEEcCCCCEEEEEeccceEEEEEccc
Confidence 11111111111122 589999999999999999999998544
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=211.05 Aligned_cols=325 Identities=20% Similarity=0.249 Sum_probs=240.6
Q ss_pred CCeEEEccCceEEEEeccCcccccc----------------eeee----------eEeecCCCCEEEEEEcCCCCEEEEE
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTA----------------LYKC----------QEIQAHNGSIWSIKFSLDGRYLASA 474 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~----------------l~~~----------q~L~gH~~~I~~vafSpdG~~LaSg 474 (927)
..+++++++|..||+|...-+.... .... .-+.||++.|.++.|+|.+..|+++
T Consensus 206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSA 285 (764)
T KOG1063|consen 206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSA 285 (764)
T ss_pred cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheec
Confidence 4567889999999999875544111 0111 1245999999999999999999999
Q ss_pred eCCCcEEEEecCcCcccc--eeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceE
Q 002407 475 GEDCVIHVWQVVESERKG--ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETV 552 (927)
Q Consensus 475 s~DgtVrVWdv~~~~~~~--~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v 552 (927)
+.|.++.||.-.+...+. .+..+...+.....+...|+|++..+++-+..+.+..++.... ..
T Consensus 286 SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~---------------~~ 350 (764)
T KOG1063|consen 286 SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK---------------TF 350 (764)
T ss_pred ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc---------------cc
Confidence 999999999877653322 2223333455666788899999888877777776644431000 00
Q ss_pred eecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC-cEEEEEe----cCCceEEEEEccCCCCEEEEE
Q 002407 553 FALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK-TCLKIFS----HSDYVTCIQFNPVDDRYFISG 626 (927)
Q Consensus 553 ~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~-~~~~~~~----h~~~V~~v~fsp~dg~~L~sg 626 (927)
| .....+.||.+.|.+++|+|. .+|++.+.|.|-|||-.-.. +.-+.+. |...++|++|-+ ....|++|
T Consensus 351 w----~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSg 425 (764)
T KOG1063|consen 351 W----TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSG 425 (764)
T ss_pred e----eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeec
Confidence 0 223346799999999999998 78999999999999876522 2223332 888999999987 67788899
Q ss_pred ECCCcEEEEeCCCC-------------------------------------------cE---------------------
Q 002407 627 SLDAKVRIWSIPER-------------------------------------------QV--------------------- 642 (927)
Q Consensus 627 s~Dg~I~IWDl~t~-------------------------------------------~~--------------------- 642 (927)
.....+|+|+.+.. ..
T Consensus 426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 88888999986310 00
Q ss_pred -------------EEeccCCCcEEEEEECCCCCEEEEEECCC-----eEEEEECCCCeeeeecccccccccccCCCCCeE
Q 002407 643 -------------VDWNDLHEMVTAACYTPDGQGALVGSYKG-----SCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704 (927)
Q Consensus 643 -------------v~~~~~~~~V~sla~spdg~~l~tgs~Dg-----~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt 704 (927)
...++|...|.+++.+|+++++++++... .|++|+..+-.....+ ..|.-.|+
T Consensus 506 EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L---------~~HsLTVT 576 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL---------EGHSLTVT 576 (764)
T ss_pred HHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee---------cccceEEE
Confidence 01234556799999999999999987643 4999998876555433 48999999
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECCcc-eEEEE---eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 705 GFQFAPGSSSEVLVTSADSRIRVVDGIDL-VHKFK---GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I~VwD~~~~-~~~~~---~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
.++|+|++. +|++.+.|.++.+|...+. ...+. ...|...|.++.|+|++++++|+|.|..|+||.....
T Consensus 577 ~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 577 RLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEECCCCc-EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 999999987 8999999999999984321 11111 3345667889999999999999999999999999876
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=211.06 Aligned_cols=255 Identities=20% Similarity=0.327 Sum_probs=203.4
Q ss_pred ecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeec
Q 002407 453 QAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG-~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~ 531 (927)
.-|.+.|+.+.+-|.. ..+||.+..+.|.|||..+........ +
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-------------------------~---------- 165 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-------------------------G---------- 165 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-------------------------c----------
Confidence 3599999999999965 477778889999999986543221110 0
Q ss_pred ccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcE-------EE
Q 002407 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTC-------LK 602 (927)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~-------~~ 602 (927)
.-.|-..|.||.+.-+.|+|++. +.|++++.|++|++||+..... ..
T Consensus 166 ------------------------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~ 221 (422)
T KOG0264|consen 166 ------------------------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKT 221 (422)
T ss_pred ------------------------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceE
Confidence 11445577899998899999987 8899999999999999975432 23
Q ss_pred EEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC--CcEE-EeccCCCcEEEEEECC-CCCEEEEEECCCeEEEEE
Q 002407 603 IFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE--RQVV-DWNDLHEMVTAACYTP-DGQGALVGSYKGSCHLYN 677 (927)
Q Consensus 603 ~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t--~~~v-~~~~~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwD 677 (927)
.+. |...|..++|+|.+..+|++++.|+.+.|||+++ .+.. ....|...|++++|+| ++..||+|+.|++|.+||
T Consensus 222 ~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwD 301 (422)
T KOG0264|consen 222 IFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWD 301 (422)
T ss_pred EeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEee
Confidence 344 9999999999999999999999999999999995 3332 3456678999999999 556788899999999999
Q ss_pred CCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc--------------eEEEEeecCC
Q 002407 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL--------------VHKFKGFRNT 743 (927)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~--------------~~~~~~~~~~ 743 (927)
+++..... ....+|...|..+.|+|....+|++++.|+.+.|||.... ...|..-.|.
T Consensus 302 lRnL~~~l--------h~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~ 373 (422)
T KOG0264|consen 302 LRNLNKPL--------HTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHT 373 (422)
T ss_pred chhcccCc--------eeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcc
Confidence 99765421 1235899999999999999999999999999999994322 2234445667
Q ss_pred cceEEEEEecCCCE-EEEEECCCcEEEEECCC
Q 002407 744 NSQISASLTANGRY-VVSASEDSYVYVWKYEA 774 (927)
Q Consensus 744 ~~v~sv~fspdg~~-Lasgs~Dg~I~IWdl~s 774 (927)
..|..+.|+|+..+ |++.++|+.+.||++..
T Consensus 374 ~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 374 AKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 88999999998875 66788999999999874
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=216.86 Aligned_cols=278 Identities=19% Similarity=0.325 Sum_probs=214.7
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEE-EccC-CCCCeecccccCCc
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL-ANGS-PEPTSLSPKHLDNH 526 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~-v~~s-pd~~~la~~~~~~~ 526 (927)
.++|.||...|..+++.++. .++++|.||+++||+-...+...... ..++.+.+.. +.+. .+.-.+..++.+..
T Consensus 7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~---~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHA---FEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCccccccee---cccCcceeeccceeccccCcceEeecccce
Confidence 36789999999999987655 89999999999999976665444221 1223333332 3332 34444556666665
Q ss_pred eeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEE-
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF- 604 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~- 604 (927)
+. +|.. ...|+.+|.||...|.+++...++.|++||.|.++++|-+.. +...+
T Consensus 83 i~-----------------------v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~--l~~~l~ 137 (745)
T KOG0301|consen 83 II-----------------------VFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE--LVYSLQ 137 (745)
T ss_pred EE-----------------------EEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh--hhcccC
Confidence 52 3333 457899999999999999988888899999999999998754 33334
Q ss_pred ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCee
Q 002407 605 SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (927)
Q Consensus 605 ~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~ 683 (927)
.|+..|+++++.| .+ .++||+.|.+|++|.- ++++. +..|.+.|..+++-+++ .|++++.||.|++|++ ++..
T Consensus 138 gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~ 211 (745)
T KOG0301|consen 138 GHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEV 211 (745)
T ss_pred CcchheeeeeecC-CC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCce
Confidence 4999999999998 55 8999999999999985 45544 55677899999999876 5889999999999999 5555
Q ss_pred eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEEC
Q 002407 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~ 763 (927)
+..+ .+|..-|+++....++. .++++++|++++||+...+.+.+... ...++++.+-++|. |++|+.
T Consensus 212 l~~~---------~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 212 LLEM---------HGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKDECVQVITLP--TTSIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred eeee---------eccceEEEEEEecCCCC-eEEEecCCceEEEeecCceEEEEecC--ccceEEEEEeeCCC-EEEecc
Confidence 5554 48999999999655544 89999999999999988777776654 55788888888885 677788
Q ss_pred CCcEEEEECCC
Q 002407 764 DSYVYVWKYEA 774 (927)
Q Consensus 764 Dg~I~IWdl~s 774 (927)
||.||||....
T Consensus 279 DG~VrVfT~~k 289 (745)
T KOG0301|consen 279 DGRVRVFTVDK 289 (745)
T ss_pred CceEEEEEecc
Confidence 99999999874
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-21 Score=209.21 Aligned_cols=255 Identities=20% Similarity=0.297 Sum_probs=208.6
Q ss_pred CceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEE
Q 002407 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (927)
Q Consensus 429 ~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~ 508 (927)
...+|.+|+..+....+. +.-.+..|.++.|-.||++||.|+..|.|+|+|+.+...+..+ ..|..++..
T Consensus 46 ~S~rvqly~~~~~~~~k~-----~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~-----~ah~apv~~ 115 (487)
T KOG0310|consen 46 SSVRVQLYSSVTRSVRKT-----FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL-----YAHQAPVHV 115 (487)
T ss_pred cccEEEEEecchhhhhhh-----HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH-----hhccCceeE
Confidence 345677888766655443 3456788999999999999999999999999996654344443 577889999
Q ss_pred EccCCCC-CeecccccCCceeeecccccccccccccCcccccceEeecCCCceE-EEccCCCCEEEEEecCC--cEEEEE
Q 002407 509 ANGSPEP-TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC-SFQGHLDDVLDLSWSKS--QHLLSS 584 (927)
Q Consensus 509 v~~spd~-~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~-~l~gH~~~V~~l~~spd--~~L~Sg 584 (927)
..|+|+. +.+++++++..+ .+|+++...+. .+.+|++.|.|.+|+|. ..++||
T Consensus 116 ~~f~~~d~t~l~s~sDd~v~-----------------------k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtG 172 (487)
T KOG0310|consen 116 TKFSPQDNTMLVSGSDDKVV-----------------------KYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTG 172 (487)
T ss_pred EEecccCCeEEEecCCCceE-----------------------EEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEec
Confidence 9999974 555555555544 56666655554 78999999999999996 579999
Q ss_pred eCCCcEEEEeCCCC-cEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC-cEEE-eccCCCcEEEEEECCCC
Q 002407 585 SMDKTVRLWHLSSK-TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-QVVD-WNDLHEMVTAACYTPDG 661 (927)
Q Consensus 585 s~DgtV~lWDl~t~-~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~-~~v~-~~~~~~~V~sla~spdg 661 (927)
+.||+|++||++.. ..+..+.|..+|..+.|-| .+.+|++++. ..|++||+.+| +.+. ...|+..|+|+.+..++
T Consensus 173 sYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 173 SYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDS 250 (487)
T ss_pred CCCceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCC
Confidence 99999999999987 7788889999999999999 8888988875 57999999854 4444 44488999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 662 QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 662 ~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
..|++|+-|+.+++||+.+.+.+..+ .-.++|.+++.+|++. .+++|..+|.+.+-+
T Consensus 251 ~rLlS~sLD~~VKVfd~t~~Kvv~s~----------~~~~pvLsiavs~dd~-t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 251 TRLLSGSLDRHVKVFDTTNYKVVHSW----------KYPGPVLSIAVSPDDQ-TVVIGMSNGLVSIRR 307 (487)
T ss_pred ceEeecccccceEEEEccceEEEEee----------ecccceeeEEecCCCc-eEEEecccceeeeeh
Confidence 99999999999999998888887775 4568899999999876 799999999887763
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-19 Score=196.88 Aligned_cols=420 Identities=14% Similarity=0.140 Sum_probs=285.7
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcC--CCCEEEEE--eCCCcEEEEecCcCcccceeecccccCccccEE
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--DGRYLASA--GEDCVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp--dG~~LaSg--s~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~ 507 (927)
.|++|+.. .+..|+ .|-.-...|.|++||+ .|.+|+.- +.+..+.|||+..+....+. ......++
T Consensus 135 hvriWdsv--~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~v-----k~sne~v~ 204 (626)
T KOG2106|consen 135 HVRIWDSV--TLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPV-----KTSNEVVF 204 (626)
T ss_pred eeeecccc--cceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcc-----eeccceEE
Confidence 48889732 333333 3445677899999998 45666664 45678999999887766554 33456788
Q ss_pred EEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCC-CCEEEEEecCCcEEEEEeC
Q 002407 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL-DDVLDLSWSKSQHLLSSSM 586 (927)
Q Consensus 508 ~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~-~~V~~l~~spd~~L~Sgs~ 586 (927)
.+.|.|...-+......+++.++........ +....|.++. ..|.|++|.+++.++||..
T Consensus 205 ~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~-------------------k~~~~fek~ekk~Vl~v~F~engdviTgDS 265 (626)
T KOG2106|consen 205 LATFHPTDPNLIITCGKGHLYFWTLRGGSLV-------------------KRQGIFEKREKKFVLCVTFLENGDVITGDS 265 (626)
T ss_pred EEEeccCCCcEEEEeCCceEEEEEccCCceE-------------------EEeeccccccceEEEEEEEcCCCCEEeecC
Confidence 8999997555444445555544422211100 1122233332 5699999999999999999
Q ss_pred CCcEEEEeCCCCcEEEEE-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc--EEEeccCCCcEEEEEECCCCCE
Q 002407 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--VVDWNDLHEMVTAACYTPDGQG 663 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~--~v~~~~~~~~V~sla~spdg~~ 663 (927)
+|.|.||+..+.+..+.. .|.+.|.+++... ++. |++|+.|..|..||-.-.+ .+...+..+.|..++-... -
T Consensus 266 ~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr-~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~--d 341 (626)
T KOG2106|consen 266 GGNILIWSKGTNRISKQVHAHDGGVFSLCMLR-DGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKG--D 341 (626)
T ss_pred CceEEEEeCCCceEEeEeeecCCceEEEEEec-Ccc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCC--c
Confidence 999999999887766544 4999999999987 665 5669999999999932222 2223333457777764433 3
Q ss_pred EEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCC
Q 002407 664 ALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNT 743 (927)
Q Consensus 664 l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~ 743 (927)
|++|+..+.|..=.++++-.+.. .+|......++.+|+.+ ++++++.|+.+++|+..+++-... -.
T Consensus 342 i~vGTtrN~iL~Gt~~~~f~~~v----------~gh~delwgla~hps~~-q~~T~gqdk~v~lW~~~k~~wt~~---~~ 407 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGFTLTV----------QGHGDELWGLATHPSKN-QLLTCGQDKHVRLWNDHKLEWTKI---IE 407 (626)
T ss_pred EEEeeccceEEEeeecCCceEEE----------EecccceeeEEcCCChh-heeeccCcceEEEccCCceeEEEE---ec
Confidence 88898888887777776654443 37888999999999876 899999999999999443333222 24
Q ss_pred cceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEec-CCceeEEeecCCceeecc
Q 002407 744 NSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPW-PGVGDTWGLQDTYLDEFS 822 (927)
Q Consensus 744 ~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~-~g~~~i~~~~d~~i~~~~ 822 (927)
.++.++.|+|.| .||.|...|...+.|.++......... ....+...|.+++..+|+.. ++.++++.+.........
T Consensus 408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r 485 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR 485 (626)
T ss_pred CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE
Confidence 567899999999 999999999999999999655544433 44556678888888777654 566777765544322221
Q ss_pred ccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccccccCCCceeccc-----------
Q 002407 823 TANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTARNRSPRTSLDI----------- 891 (927)
Q Consensus 823 ~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~~~~~s~v~s~~~----------- 891 (927)
....+ + .+++.+.||+|+++|.+-+ .|--+..|....... ..++..+.+
T Consensus 486 ~~k~~-----------g-s~ithLDwS~Ds~~~~~~S----~d~eiLyW~~~~~~~----~ts~kDvkW~t~~c~lGF~v 545 (626)
T KOG2106|consen 486 VGKCS-----------G-SPITHLDWSSDSQFLVSNS----GDYEILYWKPSECKQ----ITSVKDVKWATYTCTLGFEV 545 (626)
T ss_pred eeeec-----------C-ceeEEeeecCCCceEEecc----CceEEEEEccccCcc----cceecceeeeeeEEEEEEEE
Confidence 11111 1 4456677999999999976 565666774321100 000111111
Q ss_pred ------CCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 892 ------SNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 892 ------~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
....+++.|.+.++|++|.+-|.|++|++
T Consensus 546 ~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y 580 (626)
T KOG2106|consen 546 FGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY 580 (626)
T ss_pred ecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence 11116788999999999999999999993
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=196.92 Aligned_cols=249 Identities=18% Similarity=0.292 Sum_probs=199.3
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
..|++.|..+...--|+.||||+.|++|+|+.+.....
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------------------------ 45 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------------------------ 45 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------------------------
Confidence 57999999999988999999999999999999865431
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEec-CC--cEEEEEeCCCcEEEEeCCCCcEEEEEe---c
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS-KS--QHLLSSSMDKTVRLWHLSSKTCLKIFS---H 606 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~s-pd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~---h 606 (927)
.+++.+|.||.++|+.++|. |. ..|++++.||.|.||.-.+++-.+... |
T Consensus 46 ------------------------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h 101 (299)
T KOG1332|consen 46 ------------------------SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAH 101 (299)
T ss_pred ------------------------ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhh
Confidence 14466889999999999995 44 679999999999999999886555443 8
Q ss_pred CCceEEEEEccCC-CCEEEEEECCCcEEEEeCCCC-c---EEEeccCCCcEEEEEECCC---C-----------CEEEEE
Q 002407 607 SDYVTCIQFNPVD-DRYFISGSLDAKVRIWSIPER-Q---VVDWNDLHEMVTAACYTPD---G-----------QGALVG 667 (927)
Q Consensus 607 ~~~V~~v~fsp~d-g~~L~sgs~Dg~I~IWDl~t~-~---~v~~~~~~~~V~sla~spd---g-----------~~l~tg 667 (927)
...|++|+|.|.+ +-.|++++.||.|.|.+.+.. . ..-...|.-.|++++|.|- | +.|++|
T Consensus 102 ~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSg 181 (299)
T KOG1332|consen 102 SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSG 181 (299)
T ss_pred cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeecc
Confidence 9999999999943 556889999999999988764 1 1124566778999999985 4 569999
Q ss_pred ECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC---CcEEEEEECCCcEEEEECCcceEEEE---eec
Q 002407 668 SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS---SSEVLVTSADSRIRVVDGIDLVHKFK---GFR 741 (927)
Q Consensus 668 s~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg---~~~Llsgs~Dg~I~VwD~~~~~~~~~---~~~ 741 (927)
+.|..|+||+...+....... +..|...|..++|.|.- ...|++++.||++.||.........+ .+.
T Consensus 182 GcDn~VkiW~~~~~~w~~e~~-------l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~ 254 (299)
T KOG1332|consen 182 GCDNLVKIWKFDSDSWKLERT-------LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE 254 (299)
T ss_pred CCccceeeeecCCcchhhhhh-------hhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc
Confidence 999999999998874433322 36899999999999964 34799999999999998442211111 112
Q ss_pred CCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 742 NTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 742 ~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
....+..++|+..|++|+.++.|+.|.+|.-..
T Consensus 255 f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 255 FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 345688999999999999999999999997654
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-21 Score=198.32 Aligned_cols=311 Identities=15% Similarity=0.246 Sum_probs=238.8
Q ss_pred eeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 448 ~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
..++|.||++.||.++.......+.+++.|.+.+||.++++.++.++ .+|.+.|.++.|++.+.+++++..+...
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-----~GH~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-----TGHTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-----cccccceeeEEeccccceEEEccCCcch
Confidence 34677899999999999888889999999999999999999998885 7899999999999999999988877654
Q ss_pred eeecccccccc------cccccCccc--ccceEeec----------CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCC
Q 002407 528 EKKRRGRSINR------KSLSLDHMV--VPETVFAL----------SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK 588 (927)
Q Consensus 528 ~~~~~~~~~~~------~~~~~~~~~--~~~~v~~~----------s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~Dg 588 (927)
-++...-.+.. ...+...-. ..+...+. -..|+..|.+|.+.|.+..|... +.+++++.|.
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence 33331111111 001000000 00000000 12578889999999999999887 7899999999
Q ss_pred cEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC--cEEEeccCCCcEEEEEECCCCCEEE
Q 002407 589 TVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--QVVDWNDLHEMVTAACYTPDGQGAL 665 (927)
Q Consensus 589 tV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--~~v~~~~~~~~V~sla~spdg~~l~ 665 (927)
+..+||+++++.+..+. |....+.++-+| ..+++++.+.|-+.++||++.. .+-.+.+|.+.|+++.|.-+. .++
T Consensus 295 TAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vV 372 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVV 372 (481)
T ss_pred cceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-cee
Confidence 99999999999999987 999999999999 9999999999999999999853 223466778999999998766 589
Q ss_pred EEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ceEE---EEeec
Q 002407 666 VGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-LVHK---FKGFR 741 (927)
Q Consensus 666 tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~---~~~~~ 741 (927)
+|+.|.+|++||+++....... .....+++.++.+..++ +|+.--.+.+|++||+.. .+.. .....
T Consensus 373 SgSDDrTvKvWdLrNMRsplAT---------IRtdS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqg 442 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMRSPLAT---------IRTDSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNRLARLPRTSRQG 442 (481)
T ss_pred ecCCCceEEEeeeccccCccee---------eecCCccceeEeecCCc-eEEeccCCceEEEEecCCCccccCCcccccc
Confidence 9999999999999876533221 14456788888888665 777888889999999532 1111 12334
Q ss_pred CCcceEEEEEecCC--CEEEEEECCCcEEEEECCCC
Q 002407 742 NTNSQISASLTANG--RYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 742 ~~~~v~sv~fspdg--~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|...|.+++|..+- .-|++++-|..+.=|++...
T Consensus 443 HrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 443 HRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 56778999997653 34788999999999999764
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=222.89 Aligned_cols=243 Identities=17% Similarity=0.285 Sum_probs=192.1
Q ss_pred EEEc-cCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCC--------------------------------C--------
Q 002407 561 CSFQ-GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS--------------------------------K-------- 598 (927)
Q Consensus 561 ~~l~-gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t--------------------------------~-------- 598 (927)
+.+. .|.+.|++|.|++| .+||+|+.|+.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3445 89999999999999 7899999999999998754 0
Q ss_pred --------------------cEEEEE-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEE
Q 002407 599 --------------------TCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACY 657 (927)
Q Consensus 599 --------------------~~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~ 657 (927)
+++..| +|.+.|.+|.|+. .++|++++.|.+|+||++...+++..+.|.+.|+|++|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaF 417 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAF 417 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEe
Confidence 001111 3889999999995 77999999999999999999999999999999999999
Q ss_pred CC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEE
Q 002407 658 TP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHK 736 (927)
Q Consensus 658 sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~ 736 (927)
+| |.+||++|+-||.|+||++...+...... ...-|++++|.|+|+ ..++|+.+|.+++|++..+...
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D----------l~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWND----------LRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehh----------hhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCeEE
Confidence 99 88999999999999999999988877643 347799999999987 8999999999999997654333
Q ss_pred EEee--cC------CcceEEEEEecCC-CEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCc
Q 002407 737 FKGF--RN------TNSQISASLTANG-RYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGV 807 (927)
Q Consensus 737 ~~~~--~~------~~~v~sv~fspdg-~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~ 807 (927)
...+ .+ ...|+.+.|.|.. ..|++.+.|..|+|||++......+.++.....+ .+.+.+.-+|.
T Consensus 487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S-------Q~~Asfs~Dgk 559 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS-------QISASFSSDGK 559 (712)
T ss_pred EeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc-------ceeeeEccCCC
Confidence 3222 11 2369999998754 3577778999999999987776666665433322 23334455677
Q ss_pred eeEEeecCCceeeccc
Q 002407 808 GDTWGLQDTYLDEFST 823 (927)
Q Consensus 808 ~~i~~~~d~~i~~~~~ 823 (927)
..+.+..|..++.|..
T Consensus 560 ~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 560 HIVSASEDSWVYIWKN 575 (712)
T ss_pred EEEEeecCceEEEEeC
Confidence 6777777777777764
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8e-21 Score=214.16 Aligned_cols=279 Identities=22% Similarity=0.299 Sum_probs=227.5
Q ss_pred ceeeeeccccCCCCCCcccCccccCCceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEE-EE
Q 002407 385 TVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWS-IK 463 (927)
Q Consensus 385 ~~~~~~~g~k~~~~~~~~~~~~~~~g~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~-va 463 (927)
.+.+.+.||+.+. +.+..++. ..+.+++.++++++|.+..++.... ..+.+|.+.|.+ ++
T Consensus 5 ~ls~~l~gH~~DV--------------r~v~~~~~--~~i~s~sRd~t~~vw~~~~~~~l~~---~~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDV--------------RAVAVTDG--VCIISGSRDGTVKVWAKKGKQYLET---HAFEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccch--------------heeEecCC--eEEeecCCCCceeeeeccCcccccc---eecccCcceeeccce
Confidence 3677788887652 11222222 2578899999999999887766543 456889999988 88
Q ss_pred EcC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccc
Q 002407 464 FSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLS 542 (927)
Q Consensus 464 fSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~ 542 (927)
|-+ ++..|++|+.|.+|.||..........+ .+|...|.++....++. +++++.+.....|..
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L-----kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~---------- 129 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL-----KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI---------- 129 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhh-----hccccceeeeecCCcCc-eEecccccceEEecc----------
Confidence 886 5557999999999999999988877775 68889999999888888 667777776644432
Q ss_pred cCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCC
Q 002407 543 LDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDR 621 (927)
Q Consensus 543 ~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~ 621 (927)
++....+.+|+..|+++...|.+.++|||.|++|++|.- ++++++|. |++.|..+++-+ +.
T Consensus 130 --------------~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~--~~ 191 (745)
T KOG0301|consen 130 --------------GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD--DS 191 (745)
T ss_pred --------------hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEec--CC
Confidence 244556899999999999999999999999999999986 77888887 999999999986 45
Q ss_pred EEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCC
Q 002407 622 YFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQR 701 (927)
Q Consensus 622 ~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~ 701 (927)
.|++++.||.|++|++....+.....|...+.+++..+++..+++++.|++++||+.. .+.+.+. -...
T Consensus 192 ~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~---------lPtt 260 (745)
T KOG0301|consen 192 HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT---------LPTT 260 (745)
T ss_pred CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe---------cCcc
Confidence 6899999999999999777777889999999999988888999999999999999987 4555432 2344
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 702 KITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
.|.++.+.++|. |++|+.||.||||.
T Consensus 261 siWsa~~L~NgD--Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 261 SIWSAKVLLNGD--IVVGGSDGRVRVFT 286 (745)
T ss_pred ceEEEEEeeCCC--EEEeccCceEEEEE
Confidence 799999998885 99999999999997
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=198.18 Aligned_cols=317 Identities=19% Similarity=0.240 Sum_probs=232.2
Q ss_pred eeeeeecCCCCe-EEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcc
Q 002407 412 RSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER 490 (927)
Q Consensus 412 ~~~sa~~d~~~~-~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~ 490 (927)
..+.+.....+. +++|..+|.|.+|++....+.+ +. .+|.+.|.+++.-.+|.+| ||+.|..|..|| ..-+.
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k----~~-~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd-~~y~k 319 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISK----QV-HAHDGGVFSLCMLRDGTLL-SGGKDRKIILWD-DNYRK 319 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEe----Ee-eecCCceEEEEEecCccEe-ecCccceEEecc-ccccc
Confidence 344444444333 6899999999999986554443 33 4999999999999999755 599999999999 33333
Q ss_pred cceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCE
Q 002407 491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570 (927)
Q Consensus 491 ~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V 570 (927)
..+.. .......+..++-.... + ..+...+.+. .-.++........+|....
T Consensus 320 ~r~~e---lPe~~G~iRtv~e~~~d-i-~vGTtrN~iL-----------------------~Gt~~~~f~~~v~gh~del 371 (626)
T KOG2106|consen 320 LRETE---LPEQFGPIRTVAEGKGD-I-LVGTTRNFIL-----------------------QGTLENGFTLTVQGHGDEL 371 (626)
T ss_pred ccccc---CchhcCCeeEEecCCCc-E-EEeeccceEE-----------------------EeeecCCceEEEEecccce
Confidence 33322 22333444444433322 2 2222222221 1122334455677899999
Q ss_pred EEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC
Q 002407 571 LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH 649 (927)
Q Consensus 571 ~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~ 649 (927)
+.++.+|+ .+++|++.|+.|+||+ ..+++.......++.|+.|+| .+ .++.|...|...+.|..+..++......
T Consensus 372 wgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~ 447 (626)
T KOG2106|consen 372 WGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTDN 447 (626)
T ss_pred eeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEecC
Confidence 99999998 8899999999999999 666777767889999999999 77 9999999999999999998888876668
Q ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
.+++++.|+|+|.+||+|+.|+.|+||-+..+....... .+.+..+|+.+.|++|++ +|.+-+.|-.|..|.
T Consensus 448 ~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~-------~k~~gs~ithLDwS~Ds~-~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 448 EQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV-------GKCSGSPITHLDWSSDSQ-FLVSNSGDYEILYWK 519 (626)
T ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe-------eeecCceeEEeeecCCCc-eEEeccCceEEEEEc
Confidence 899999999999999999999999999987655443321 124458999999999987 888999999999997
Q ss_pred CCcce----------------EEEE--eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 730 GIDLV----------------HKFK--GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 730 ~~~~~----------------~~~~--~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
..... .-|. +-.+...+..++-+.+.+++|+|.+.|.|+||...-.
T Consensus 520 ~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~ 583 (626)
T KOG2106|consen 520 PSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCS 583 (626)
T ss_pred cccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccC
Confidence 32111 1111 1123344555666788899999999999999988643
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-21 Score=210.26 Aligned_cols=283 Identities=19% Similarity=0.311 Sum_probs=231.4
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
-.|..-|.++.+|...+++.||| .|.|+|||+.......-+.........+.+..+...||+..|++++....+.
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastls---- 490 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS---- 490 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceee----
Confidence 36999999999999999999998 5789999998664333222222233456788999999999988887766653
Q ss_pred cccccccccccCcccccceEeecCC---CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSD---KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~---k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~ 607 (927)
+|++.. .....+..-.-...+|+.+|| +..+++..||.|.|||+.....++.|. |+
T Consensus 491 -------------------iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 491 -------------------IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred -------------------eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC
Confidence 333322 111223333345678899999 778899999999999999999999998 99
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
+.+.||.+++ +|..|-+|+.|.+|+-||+++++.+...+....|.++.++|.+.+|++|-.++.+.|......+..+.
T Consensus 552 DGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyql- 629 (705)
T KOG0639|consen 552 DGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQL- 629 (705)
T ss_pred CCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceee-
Confidence 9999999999 99999999999999999999999888888889999999999999999999999999888765443222
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
..|..-|.++.|.+-|+ ++++++.|..+..|.+.-....|... ....|.++.++.|.+||+||+.|...
T Consensus 630 ---------hlheScVLSlKFa~cGk-wfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkA 698 (705)
T KOG0639|consen 630 ---------HLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKA 698 (705)
T ss_pred ---------cccccEEEEEEecccCc-eeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcce
Confidence 46888999999999987 89999999999999976556666554 56789999999999999999999998
Q ss_pred EEEEC
Q 002407 768 YVWKY 772 (927)
Q Consensus 768 ~IWdl 772 (927)
.||.+
T Consensus 699 TVYeV 703 (705)
T KOG0639|consen 699 TVYEV 703 (705)
T ss_pred EEEEE
Confidence 88875
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=201.92 Aligned_cols=238 Identities=18% Similarity=0.273 Sum_probs=201.7
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccc
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~ 535 (927)
.-.|.++...|....++||+.|..+.++|....+
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q---------------------------------------------- 252 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ---------------------------------------------- 252 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhh----------------------------------------------
Confidence 3578889998887899999999999999975543
Q ss_pred ccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEE
Q 002407 536 INRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCI 613 (927)
Q Consensus 536 ~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v 613 (927)
.+..|.||...|+.+.++++ ..+++++.|..|+||......+..... |..+|+.+
T Consensus 253 -----------------------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~l 309 (506)
T KOG0289|consen 253 -----------------------ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGL 309 (506)
T ss_pred -----------------------hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceee
Confidence 23467899999999999999 779999999999999998776655554 99999999
Q ss_pred EEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC---CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccc
Q 002407 614 QFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH---EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN 690 (927)
Q Consensus 614 ~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~---~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~ 690 (927)
..+| .+.||++++.|++..+.|++++..+....++ -.+++++|+|||..|.+|..|+.|+|||+........+
T Consensus 310 s~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F--- 385 (506)
T KOG0289|consen 310 SLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF--- 385 (506)
T ss_pred eecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC---
Confidence 9999 9999999999999999999999887655553 36999999999999999999999999999988866655
Q ss_pred cccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce--EEEEeecCCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 691 LQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV--HKFKGFRNTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 691 ~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~--~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
.+|.++|..++|+.+| ++|++++.|+.|++||+++.. ..+... ....+.+++|.+.|.+|+.++.|=.||
T Consensus 386 ------pght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 386 ------PGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGTYLGIAGSDLQVY 457 (506)
T ss_pred ------CCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeecc-ccccceeEEEcCCCCeEEeecceeEEE
Confidence 4899999999999976 589999999999999987654 233332 233688999999999999998877777
Q ss_pred EEECCC
Q 002407 769 VWKYEA 774 (927)
Q Consensus 769 IWdl~s 774 (927)
+++-.+
T Consensus 458 ~~~k~~ 463 (506)
T KOG0289|consen 458 ICKKKT 463 (506)
T ss_pred EEeccc
Confidence 776443
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-21 Score=194.90 Aligned_cols=239 Identities=16% Similarity=0.303 Sum_probs=195.4
Q ss_pred ceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCc
Q 002407 411 RRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESE 489 (927)
Q Consensus 411 ~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~ 489 (927)
-.-++-.......+++...+|.+++|+...+ -.+++.++.|+..|.++.|++ ++..+++++.|++|++|+..-.
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~----s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~- 137 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMP----SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP- 137 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCC----CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-
Confidence 3345555566677888899999999994433 235677899999999999998 5667888899999999986422
Q ss_pred ccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCC
Q 002407 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDD 569 (927)
Q Consensus 490 ~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~ 569 (927)
+.+++|.||..-
T Consensus 138 --------------------------------------------------------------------~Sv~Tf~gh~~~ 149 (311)
T KOG0277|consen 138 --------------------------------------------------------------------NSVQTFNGHNSC 149 (311)
T ss_pred --------------------------------------------------------------------cceEeecCCccE
Confidence 345678899999
Q ss_pred EEEEEecCC--cEEEEEeCCCcEEEEeCCC-CcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc--EEE
Q 002407 570 VLDLSWSKS--QHLLSSSMDKTVRLWHLSS-KTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--VVD 644 (927)
Q Consensus 570 V~~l~~spd--~~L~Sgs~DgtV~lWDl~t-~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~--~v~ 644 (927)
|...+|+|. +.++++|.|+++++||++. ++.+.+..|...|.|+.|+..+.+.|++|+.|+.|++||++.-+ +..
T Consensus 150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e 229 (311)
T KOG0277|consen 150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE 229 (311)
T ss_pred EEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccccee
Confidence 999999997 8899999999999999985 44555444999999999999899999999999999999998754 234
Q ss_pred eccCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC
Q 002407 645 WNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg 723 (927)
+..|.-.|..+.|+|.. ..|++++.|-+++|||...+....... ..|..-+..+.|++..+.+++.++.|.
T Consensus 230 L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~--------~~HtEFv~g~Dws~~~~~~vAs~gWDe 301 (311)
T KOG0277|consen 230 LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV--------DHHTEFVCGLDWSLFDPGQVASTGWDE 301 (311)
T ss_pred ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhh--------hccceEEeccccccccCceeeeccccc
Confidence 56777899999999954 578899999999999998554333211 368888999999998777999999999
Q ss_pred cEEEEEC
Q 002407 724 RIRVVDG 730 (927)
Q Consensus 724 ~I~VwD~ 730 (927)
.++||+.
T Consensus 302 ~l~Vw~p 308 (311)
T KOG0277|consen 302 LLYVWNP 308 (311)
T ss_pred ceeeecc
Confidence 9999983
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-19 Score=196.91 Aligned_cols=277 Identities=15% Similarity=0.174 Sum_probs=197.9
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~L-aSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
+++++..++.|.+|+..+++.. +.+..|.. +.+++|+|+|++| ++++.++.|++||+.+++....+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~-----~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~------- 69 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVT-----RTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL------- 69 (300)
T ss_pred EEEEecCCCEEEEEECCCCceE-----EEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec-------
Confidence 4566778889999998765432 34455544 6789999999976 56778999999998765422211
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~ 580 (927)
..+. .+..++|+|+ +.
T Consensus 70 --------------------------------------------------------------~~~~-~~~~~~~~~~g~~ 86 (300)
T TIGR03866 70 --------------------------------------------------------------PSGP-DPELFALHPNGKI 86 (300)
T ss_pred --------------------------------------------------------------cCCC-CccEEEECCCCCE
Confidence 1111 2345788888 44
Q ss_pred EE-EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC-cEEEEeCCCCcEEEeccCCCcEEEEEEC
Q 002407 581 LL-SSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA-KVRIWSIPERQVVDWNDLHEMVTAACYT 658 (927)
Q Consensus 581 L~-Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg-~I~IWDl~t~~~v~~~~~~~~V~sla~s 658 (927)
++ ++..++.|++||+.+.+.+..+.+...+.+++|+| ++.+++++..++ .+.+||..+++.+........+..++|+
T Consensus 87 l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s 165 (300)
T TIGR03866 87 LYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFT 165 (300)
T ss_pred EEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEEC
Confidence 54 44568999999999988888887666688999999 999999888775 4677899888776654445567889999
Q ss_pred CCCCEEEEEE-CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEE
Q 002407 659 PDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF 737 (927)
Q Consensus 659 pdg~~l~tgs-~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~ 737 (927)
|++++|++++ .++.|++||+.+++....+...... ..........++|+|++...+++...++.|.+||........
T Consensus 166 ~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 166 ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPG--VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccc--cccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 9999886654 5899999999998766554321100 001112345788999998545555667789999975433221
Q ss_pred EeecCCcceEEEEEecCCCEEEEE-ECCCcEEEEECCCCCCcc
Q 002407 738 KGFRNTNSQISASLTANGRYVVSA-SEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 738 ~~~~~~~~v~sv~fspdg~~Lasg-s~Dg~I~IWdl~s~~~~~ 779 (927)
. ......+.+++|+|+|++|+++ ..++.|+|||+++++...
T Consensus 244 ~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 244 Y-LLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIK 285 (300)
T ss_pred E-EEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 1 1223468899999999999886 468999999999866433
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-21 Score=206.25 Aligned_cols=267 Identities=18% Similarity=0.256 Sum_probs=215.7
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
.+.+++|..+..|++|+..... .-..++|.|-.+.|+.++|.++++++++++.|+.+++|++...+...++ .
T Consensus 187 sdtlatgg~Dr~Ik~W~v~~~k---~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL-----s 258 (459)
T KOG0288|consen 187 SDTLATGGSDRIIKLWNVLGEK---SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL-----S 258 (459)
T ss_pred cchhhhcchhhhhhhhhcccch---hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh-----c
Confidence 3567899999999999987554 3345778899999999999999999999999999999999998887776 6
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcE
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQH 580 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~ 580 (927)
+|...|.++.+......++.+..+..+..+...+....+ + .-....+.+|... ...
T Consensus 259 GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~k----------------------t-~l~~S~cnDI~~~-~~~ 314 (459)
T KOG0288|consen 259 GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSK----------------------T-VLPGSQCNDIVCS-ISD 314 (459)
T ss_pred ccccceeeehhhccccceeeccccchhhhhhhhhhheec----------------------c-ccccccccceEec-cee
Confidence 799999999988877767777777766433332211110 0 0112233344433 345
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC-----CcEEEE
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH-----EMVTAA 655 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~-----~~V~sl 655 (927)
+++|-.|++|++||+++..+.......+.|+++..++ ++..|++++.|.++.+.|+++.++...+... ...+.+
T Consensus 315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrv 393 (459)
T KOG0288|consen 315 VISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRV 393 (459)
T ss_pred eeecccccceEEEeccCCceeeEeecCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeecccccccccccee
Confidence 7889999999999999999999999778999999999 9999999999999999999999887654432 458999
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 656 CYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 656 a~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
.|+|++.|+++|+.||.|+||++.++++...... ......|+++.|+|.|. .+++++.++.+.+|
T Consensus 394 vfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-------s~s~~aI~s~~W~~sG~-~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 394 VFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL-------STSNAAITSLSWNPSGS-GLLSADKQKAVTLW 458 (459)
T ss_pred EECCCCceeeeccCCCcEEEEEccCceEEEEecc-------CCCCcceEEEEEcCCCc-hhhcccCCcceEec
Confidence 9999999999999999999999999998877653 12223799999999987 79999999999998
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-20 Score=209.81 Aligned_cols=346 Identities=18% Similarity=0.218 Sum_probs=267.5
Q ss_pred eeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccc
Q 002407 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG 492 (927)
Q Consensus 413 ~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~ 492 (927)
..+...|+..++++|...|.+-+||+..+.+... ...+|.+.|..+.|.|....|+|++.|..+++|=.+++....
T Consensus 249 slSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v----~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~p 324 (910)
T KOG1539|consen 249 SLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV----TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVP 324 (910)
T ss_pred EEEeccCCCeeEEeccCCceEEEEEcCCCeeeee----eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcc
Confidence 4567788888999999999999999987766543 336899999999999999999999999999999888766555
Q ss_pred eeecccccCccccEEEEccC-CCCCeecccccCCceeeecccc-----------------ccccc---ccccCccc----
Q 002407 493 ELLEKQEDGHLNMLLLANGS-PEPTSLSPKHLDNHLEKKRRGR-----------------SINRK---SLSLDHMV---- 547 (927)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~s-pd~~~la~~~~~~~i~~~~~~~-----------------~~~~~---~~~~~~~~---- 547 (927)
.++. ...+|..+..++.+. ..+..+.+...+..+....... .+... ......+.
T Consensus 325 R~LR-~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 325 RLLR-SRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred hhee-eccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 4432 235777777777776 5677777777766432221110 00000 00000000
Q ss_pred ------------------ccceEeecCCCceEE-EccCC------CCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEE
Q 002407 548 ------------------VPETVFALSDKPICS-FQGHL------DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL 601 (927)
Q Consensus 548 ------------------~~~~v~~~s~k~i~~-l~gH~------~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~ 601 (927)
...+.|....+.+.. .-.+. ..+++++.++. ++.+.|+..|+|-+|++++|-..
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence 012344444443311 11233 67889999888 67788899999999999999988
Q ss_pred EEE----ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEE
Q 002407 602 KIF----SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYN 677 (927)
Q Consensus 602 ~~~----~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwD 677 (927)
..| .|..+|+.++... .++.+++++.+|.+++||...+.++........++++.++.....++++..|-.|+++|
T Consensus 484 ~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 484 KSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred cccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEE
Confidence 888 3999999999987 78899999999999999999999888888889999999999999999999999999999
Q ss_pred CCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCE
Q 002407 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRY 757 (927)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~ 757 (927)
+.+.+....+ .+|...|++++|+|+|+ +|++++.|++|++||...... +....-..+++++.|+|+|.+
T Consensus 563 ~~t~kvvR~f---------~gh~nritd~~FS~Dgr-WlisasmD~tIr~wDlpt~~l-ID~~~vd~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 563 VVTRKVVREF---------WGHGNRITDMTFSPDGR-WLISASMDSTIRTWDLPTGTL-IDGLLVDSPCTSLSFSPNGDF 631 (910)
T ss_pred chhhhhhHHh---------hccccceeeeEeCCCCc-EEEEeecCCcEEEEeccCcce-eeeEecCCcceeeEECCCCCE
Confidence 9998887765 48999999999999998 899999999999999654332 233334677899999999999
Q ss_pred EEEEECC-CcEEEEECCCC
Q 002407 758 VVSASED-SYVYVWKYEAE 775 (927)
Q Consensus 758 Lasgs~D-g~I~IWdl~s~ 775 (927)
||+...| .-|++|--.+.
T Consensus 632 LAT~Hvd~~gIylWsNksl 650 (910)
T KOG1539|consen 632 LATVHVDQNGIYLWSNKSL 650 (910)
T ss_pred EEEEEecCceEEEEEchhH
Confidence 9999988 55999986653
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-20 Score=210.39 Aligned_cols=274 Identities=17% Similarity=0.249 Sum_probs=214.2
Q ss_pred EEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc--
Q 002407 571 LDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-- 647 (927)
Q Consensus 571 ~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-- 647 (927)
.-+.|+..+.|+.+. ...|++|+..++....... +...|+++.|++ ++.+|++|..+|.|.|||..+.+.+..+.
T Consensus 181 nlldWss~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 181 NLLDWSSANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred hHhhcccCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 346788656666554 4679999999999777776 489999999999 99999999999999999998877666444
Q ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
|...|.+++|. +..+.+|+.++.|.++|++..+..... ...|...|..+.|++++. ++++|+.|+.+.|
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~--------~~~H~qeVCgLkws~d~~-~lASGgnDN~~~I 327 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST--------LQGHRQEVCGLKWSPDGN-QLASGGNDNVVFI 327 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh--------hhcccceeeeeEECCCCC-eeccCCCccceEe
Confidence 46799999998 678999999999999999987655441 258999999999999987 8999999999999
Q ss_pred EECCcceEEEEeecCCcceEEEEEecC-CCEEEEEE--CCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEec
Q 002407 728 VDGIDLVHKFKGFRNTNSQISASLTAN-GRYVVSAS--EDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPW 804 (927)
Q Consensus 728 wD~~~~~~~~~~~~~~~~v~sv~fspd-g~~Lasgs--~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~ 804 (927)
||......++....|...|..++|+|- ..+||+|+ .|+.|++||..++........ .
T Consensus 328 wd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt------------g-------- 387 (484)
T KOG0305|consen 328 WDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT------------G-------- 387 (484)
T ss_pred ccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc------------C--------
Confidence 998777777777778899999999994 56888875 699999999987654332210 0
Q ss_pred CCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhc---cccc
Q 002407 805 PGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLV---LTAR 881 (927)
Q Consensus 805 ~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~---~~~~ 881 (927)
.++..+.||+..+-|+++- ++.+..+.+|....+. ...+
T Consensus 388 ------------------------------------sQVcsL~Wsk~~kEi~sth--G~s~n~i~lw~~ps~~~~~~l~g 429 (484)
T KOG0305|consen 388 ------------------------------------SQVCSLIWSKKYKELLSTH--GYSENQITLWKYPSMKLVAELLG 429 (484)
T ss_pred ------------------------------------CceeeEEEcCCCCEEEEec--CCCCCcEEEEeccccceeeeecC
Confidence 1122234666666555543 2445567778764332 2457
Q ss_pred cCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeecCCC
Q 002407 882 NRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNFGL 923 (927)
Q Consensus 882 ~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~~gl 923 (927)
|...+. .+++||||..||||+.|.++|+|+.|+.
T Consensus 430 H~~RVl--------~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 430 HTSRVL--------YLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CcceeE--------EEEECCCCCEEEEecccCcEEeccccCC
Confidence 777665 3689999999999999999999999984
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-20 Score=204.84 Aligned_cols=321 Identities=15% Similarity=0.244 Sum_probs=244.4
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCC-----------CCEEEEEeCCCcEEEEecCcC
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-----------GRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpd-----------G~~LaSgs~DgtVrVWdv~~~ 488 (927)
....+.+--.+..+.+|+.. +..+.-++..+--|...||.|.--|. -..++|++.|++||+|++..+
T Consensus 335 t~~klscVYndhSlYvWDvr--D~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~c 412 (1080)
T KOG1408|consen 335 TTDKLSCVYNDHSLYVWDVR--DVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFC 412 (1080)
T ss_pred CCceEEEEEcCceEEEEecc--ccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccc
Confidence 44556666677778888764 44455555666779999999987762 126899999999999999763
Q ss_pred cccce----eec----------------------------ccccCccccEEEEccCCCCCeecccccCCceeeecccccc
Q 002407 489 ERKGE----LLE----------------------------KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (927)
Q Consensus 489 ~~~~~----l~~----------------------------~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~ 536 (927)
..-.. ++. ...-+....+.+++.+|++..|+++...+.+.
T Consensus 413 tnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnlr-------- 484 (1080)
T KOG1408|consen 413 TNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLR-------- 484 (1080)
T ss_pred cccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceE--------
Confidence 21111 000 00012345678999999999999998888773
Q ss_pred cccccccCcccccceEeecCC-CceEEEccCCCCEEEEEecCC----cEEEEEeCCCcEEEEeCCCC-cEEEEEe-cCCc
Q 002407 537 NRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLDLSWSKS----QHLLSSSMDKTVRLWHLSSK-TCLKIFS-HSDY 609 (927)
Q Consensus 537 ~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~~~V~~l~~spd----~~L~Sgs~DgtV~lWDl~t~-~~~~~~~-h~~~ 609 (927)
++++.. .....+..|...|.||.|+.- .+|++++.|..|.|+|+... .+++++. |...
T Consensus 485 ---------------Vy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss 549 (1080)
T KOG1408|consen 485 ---------------VYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS 549 (1080)
T ss_pred ---------------EEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc
Confidence 344432 445567889999999999863 67999999999999999765 3445555 9999
Q ss_pred eEEEEEccCCC--CEEEEEECCCcEEEEeCCC----CcEEE---eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Q 002407 610 VTCIQFNPVDD--RYFISGSLDAKVRIWSIPE----RQVVD---WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 610 V~~v~fsp~dg--~~L~sgs~Dg~I~IWDl~t----~~~v~---~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~ 680 (927)
|++|.|.. .+ ..+++++.|..|. |+... +.+.. ..-.+..+..++..|..+++++++.|..|+||++..
T Consensus 550 ITsvKFa~-~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s 627 (1080)
T KOG1408|consen 550 ITSVKFAC-NGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES 627 (1080)
T ss_pred eeEEEEee-cCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccc
Confidence 99999987 54 6689999998775 34332 22221 111235788999999999999999999999999999
Q ss_pred CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEE
Q 002407 681 NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVS 760 (927)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Las 760 (927)
++....+.- ...|.+....+...|.|- +|++...|.++.++|............|...|+.+.|.+|-++|++
T Consensus 628 gKq~k~FKg------s~~~eG~lIKv~lDPSgi-Y~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlIS 700 (1080)
T KOG1408|consen 628 GKQVKSFKG------SRDHEGDLIKVILDPSGI-YLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLIS 700 (1080)
T ss_pred cceeeeecc------cccCCCceEEEEECCCcc-EEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhhee
Confidence 998887653 246778888999999886 8999999999999997665555566667888999999999999999
Q ss_pred EECCCcEEEEECCC
Q 002407 761 ASEDSYVYVWKYEA 774 (927)
Q Consensus 761 gs~Dg~I~IWdl~s 774 (927)
.+.||.|.||.+..
T Consensus 701 vsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 701 VSGDGCIFVWKLPL 714 (1080)
T ss_pred ecCCceEEEEECch
Confidence 99999999999975
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=192.09 Aligned_cols=278 Identities=18% Similarity=0.261 Sum_probs=210.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccc
Q 002407 459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR 538 (927)
Q Consensus 459 I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~ 538 (927)
-.|+.|++.|.+||.|+.||.|.|||+.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------------------------------------ 57 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------------------------------------ 57 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch------------------------------------------------
Confidence 78999999999999999999999999876431
Q ss_pred cccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEcc
Q 002407 539 KSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNP 617 (927)
Q Consensus 539 ~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp 617 (927)
-..+.+|..+|++++|+++ .+|+|+|.|..|.+||+..|.+++.+....+|+.++|+|
T Consensus 58 ---------------------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp 116 (405)
T KOG1273|consen 58 ---------------------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHP 116 (405)
T ss_pred ---------------------hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeecc
Confidence 1235679999999999999 679999999999999999999999999999999999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCcEEEe--ccC---CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccc
Q 002407 618 VDDRYFISGSLDAKVRIWSIPERQVVDW--NDL---HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ 692 (927)
Q Consensus 618 ~dg~~L~sgs~Dg~I~IWDl~t~~~v~~--~~~---~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~ 692 (927)
.+.+.+++.-.+..-.+-++..++-..+ ... .....+..|.+.|+++++|...|.+.+||..+.+++..+.+
T Consensus 117 ~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri--- 193 (405)
T KOG1273|consen 117 RKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI--- 193 (405)
T ss_pred ccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeee---
Confidence 7777777776666666666655332211 111 12233446899999999999999999999999988877653
Q ss_pred cccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce-----------EEEEeecCCcceEEEEEecCCCEEEEE
Q 002407 693 NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV-----------HKFKGFRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 693 ~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~-----------~~~~~~~~~~~v~sv~fspdg~~Lasg 761 (927)
.....|..+.|+..+. .|++-+.|..||.|+..++. ++++...+...-.+++|+.+|.|++.+
T Consensus 194 -----ts~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~ 267 (405)
T KOG1273|consen 194 -----TSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAG 267 (405)
T ss_pred -----chheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEec
Confidence 2246788889988876 89999999999999954332 222233344555689999999999888
Q ss_pred EC-CCcEEEEECCCCCCcccccccc-eeeeeeeecCCCeEEEEecCCceeEEeec
Q 002407 762 SE-DSYVYVWKYEAESRPSRSKSIT-VTHSYEHFHCQDVSVAIPWPGVGDTWGLQ 814 (927)
Q Consensus 762 s~-Dg~I~IWdl~s~~~~~~~~~~~-~~~~~~~~~~~~v~vavs~~g~~~i~~~~ 814 (927)
+. -..+|||.-..+.....+.+.. .......+|+-...++.-..|.+++|...
T Consensus 268 s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~ 322 (405)
T KOG1273|consen 268 SARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVV 322 (405)
T ss_pred cccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEee
Confidence 74 4559999999988766554433 22222334544444454466778888744
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.3e-20 Score=189.38 Aligned_cols=264 Identities=17% Similarity=0.248 Sum_probs=208.3
Q ss_pred CCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccc
Q 002407 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 419 d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
.....++.++.++.+++|+....++...+ -|..+|.+++|.++ ..+++|+.||.|+++|+.++..
T Consensus 23 ~~~~~LLvssWDgslrlYdv~~~~l~~~~------~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-------- 87 (323)
T KOG1036|consen 23 PSSSDLLVSSWDGSLRLYDVPANSLKLKF------KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-------- 87 (323)
T ss_pred CcCCcEEEEeccCcEEEEeccchhhhhhe------ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc--------
Confidence 34455677789999999998877665544 49999999999975 5799999999999999976541
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd 578 (927)
..+..|...|.||.+++-
T Consensus 88 --------------------------------------------------------------~~igth~~~i~ci~~~~~ 105 (323)
T KOG1036|consen 88 --------------------------------------------------------------DQIGTHDEGIRCIEYSYE 105 (323)
T ss_pred --------------------------------------------------------------eeeccCCCceEEEEeecc
Confidence 123459999999999986
Q ss_pred -cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE---eccCCCcEEE
Q 002407 579 -QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD---WNDLHEMVTA 654 (927)
Q Consensus 579 -~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~---~~~~~~~V~s 654 (927)
+.+++|+.|++|++||.+...+...+.....|.++.. .++.|++|+.+..|.+||+++..... .-..+..+.+
T Consensus 106 ~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~ 182 (323)
T KOG1036|consen 106 VGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRC 182 (323)
T ss_pred CCeEEEcccCccEEEEeccccccccccccCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEE
Confidence 9999999999999999998777777777779999987 56889999999999999999865443 3445578999
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccc--cc--ccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL--QN--KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 655 la~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~--~~--~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
+++.|++..+++++-+|.|.+=.++...........+ +. .+......+|++|+|+|--. .|++|+.||.|.+||.
T Consensus 183 v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 183 VALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDL 261 (323)
T ss_pred EEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccC
Confidence 9999999999999999998876665542222211111 11 11122335799999999744 7999999999999998
Q ss_pred CcceEEEEeecCCcceEEEEEecCCCEEEEEEC
Q 002407 731 IDLVHKFKGFRNTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 731 ~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~ 763 (927)
.........+.....|.+++|+.+|..||+++.
T Consensus 262 ~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 262 FNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 766666666666778999999999999999974
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-21 Score=212.34 Aligned_cols=278 Identities=18% Similarity=0.280 Sum_probs=225.2
Q ss_pred CCeEEEccCceEEEEeccCccccc-ceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLT-ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~-~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
..++++|..++.|+.|+.....-. .......++.|.+.|..|....+|+.|+++|.|-+|++|+...+. .
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~---~------ 107 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN---T------ 107 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc---c------
Confidence 347899999999999986533221 112356788999999999999999999999999999999975431 0
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEe-cCC
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW-SKS 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~-spd 578 (927)
-++.++..|.+-|.||++ -++
T Consensus 108 ----------------------------------------------------------~c~stir~H~DYVkcla~~ak~ 129 (735)
T KOG0308|consen 108 ----------------------------------------------------------FCMSTIRTHKDYVKCLAYIAKN 129 (735)
T ss_pred ----------------------------------------------------------hhHhhhhcccchheeeeecccC
Confidence 122345679999999999 555
Q ss_pred -cEEEEEeCCCcEEEEeCCCCc--EEEEE----------ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE-EE
Q 002407 579 -QHLLSSSMDKTVRLWHLSSKT--CLKIF----------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-VD 644 (927)
Q Consensus 579 -~~L~Sgs~DgtV~lWDl~t~~--~~~~~----------~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~-v~ 644 (927)
..+++|+.|+.|.|||+.++. .+..+ ++...|++++.++ .+..|++|+..+.|++||.++++. +.
T Consensus 130 ~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimk 208 (735)
T KOG0308|consen 130 NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMK 208 (735)
T ss_pred ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceee
Confidence 778999999999999999872 33322 2677899999999 889999999999999999999764 45
Q ss_pred eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 645 WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
+.+|.+.|.++..++||..+++++.||+|++||+...+++.++. .|...|.+++.+|+-. .+.+|+.|+.
T Consensus 209 LrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~---------vH~e~VWaL~~~~sf~-~vYsG~rd~~ 278 (735)
T KOG0308|consen 209 LRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI---------VHKEGVWALQSSPSFT-HVYSGGRDGN 278 (735)
T ss_pred eeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE---------eccCceEEEeeCCCcc-eEEecCCCCc
Confidence 67888999999999999999999999999999999999988864 6888899999999776 8999999999
Q ss_pred EEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 725 IRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 725 I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
|..-|+++............++..+..+...+-+-+++.|+.|+-|..+...
T Consensus 279 i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~ 330 (735)
T KOG0308|consen 279 IYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI 330 (735)
T ss_pred EEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcccc
Confidence 9999977654444444556677777776555555777889999999887543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-18 Score=192.14 Aligned_cols=425 Identities=14% Similarity=0.152 Sum_probs=274.3
Q ss_pred ceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccC
Q 002407 445 ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 445 ~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
..+.++-+.--...|.+|+|+.+.+.||.+-.||.|.||++...-........ +....+-.++|.+.+.++..+ .+
T Consensus 14 ~vhrcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g---~~drsIE~L~W~e~~RLFS~g-~s 89 (691)
T KOG2048|consen 14 QVHRCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG---PEDRSIESLAWAEGGRLFSSG-LS 89 (691)
T ss_pred EEEEEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec---CCCCceeeEEEccCCeEEeec-CC
Confidence 34444445556789999999999999999999999999999886544444332 444567778888666665554 44
Q ss_pred CceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEE
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK 602 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~ 602 (927)
+.+. -|++ +.++...+....+.|++++.+|. ..++.|+.||.+.++++..++...
T Consensus 90 g~i~-----------------------EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~ 146 (691)
T KOG2048|consen 90 GSIT-----------------------EWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY 146 (691)
T ss_pred ceEE-----------------------EEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE
Confidence 4442 2232 45777778888899999999998 778999999988888888887654
Q ss_pred EEe---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-----eccC----CCcEEEEEECCCCCEEEEEECC
Q 002407 603 IFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-----WNDL----HEMVTAACYTPDGQGALVGSYK 670 (927)
Q Consensus 603 ~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-----~~~~----~~~V~sla~spdg~~l~tgs~D 670 (927)
... .++.|.++.|+| ++..|++|+.||.|++||...+..+. .... ...|+++.|-.++ .|++|...
T Consensus 147 ~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~ 224 (691)
T KOG2048|consen 147 KRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSA 224 (691)
T ss_pred EeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCC
Confidence 432 568999999999 99999999999999999999887655 2222 2357888888665 69999999
Q ss_pred CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc----ceEEEEeecCCcce
Q 002407 671 GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID----LVHKFKGFRNTNSQ 746 (927)
Q Consensus 671 g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~----~~~~~~~~~~~~~v 746 (927)
|+|.+||...+.+.+.+ ..|...|.+++..+++. .+++++.|++|..|.... .+.......|...+
T Consensus 225 G~V~FWd~~~gTLiqS~---------~~h~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdv 294 (691)
T KOG2048|consen 225 GTVTFWDSIFGTLIQSH---------SCHDADVLALAVADNED-RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDV 294 (691)
T ss_pred ceEEEEcccCcchhhhh---------hhhhcceeEEEEcCCCC-eEEEccCCCceEEEEecCCccceeeeccccCCcccc
Confidence 99999999999888775 47899999999999866 799999999998887332 22322333455668
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEec-CCceeEEeecCCceeeccccC
Q 002407 747 ISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPW-PGVGDTWGLQDTYLDEFSTAN 825 (927)
Q Consensus 747 ~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~-~g~~~i~~~~d~~i~~~~~~~ 825 (927)
.+++..++ .|++|+.|..+.+=.............................+.+.| ...+.+|........- . ..
T Consensus 295 rs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g-~-~~ 370 (691)
T KOG2048|consen 295 RSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQG-E-YN 370 (691)
T ss_pred eeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCccccc-c-cC
Confidence 88888776 899999999999877665333222111111111111112222334555 3444555433221100 0 00
Q ss_pred CCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccccccCCCceecccCCCCCcccCCCCCE
Q 002407 826 HPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTARNRSPRTSLDISNGISSSISAWGMV 905 (927)
Q Consensus 826 ~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~~~~~s~v~s~~~~~~~~~a~S~dG~v 905 (927)
...+....+ ..-.....++.||+|.+||-..- ..-+..++-+............+....+.+ .+.|+-|+..
T Consensus 371 ~~~Llkl~~---k~~~nIs~~aiSPdg~~Ia~st~--~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~---~i~ftid~~k 442 (691)
T KOG2048|consen 371 YIHLLKLFT---KEKENISCAAISPDGNLIAISTV--SRTKIYRLQPDPNVKVINVDDVPLALLDAS---AISFTIDKNK 442 (691)
T ss_pred hhhheeeec---CCccceeeeccCCCCCEEEEeec--cceEEEEeccCcceeEEEeccchhhhccce---eeEEEecCce
Confidence 000001111 11133444568999999998651 111122222211110111111111111111 4677878877
Q ss_pred EEEEc-CCCcEEEeec
Q 002407 906 IVTAG-LRGEIRAYQN 920 (927)
Q Consensus 906 LvTgs-~DG~IrvW~~ 920 (927)
++-++ .++.+.+++.
T Consensus 443 ~~~~s~~~~~le~~el 458 (691)
T KOG2048|consen 443 LFLVSKNIFSLEEFEL 458 (691)
T ss_pred EEEEecccceeEEEEe
Confidence 77777 6677777664
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=195.74 Aligned_cols=259 Identities=22% Similarity=0.295 Sum_probs=201.5
Q ss_pred ecCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeee
Q 002407 453 QAHNGSIWSIKFSLDG--RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG--~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~ 530 (927)
.+|.+.|+.+.-++-| .+.|+-++.|.|.||++...-. .+. ..+.
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~--~l~---------------------------~~~~---- 194 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN--ALS---------------------------EPGL---- 194 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhh--hhc---------------------------Cccc----
Confidence 5688999999888755 4777888999999999854211 000 0000
Q ss_pred cccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEE----EE
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLK----IF 604 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~----~~ 604 (927)
.+-....+++.++.+|...-+.|+|||- +.|++|..-+.|++|...++.-.. ..
T Consensus 195 --------------------~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~ 254 (440)
T KOG0302|consen 195 --------------------EVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFT 254 (440)
T ss_pred --------------------cccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCcccc
Confidence 0001234789999999999999999995 889999999999999999875432 22
Q ss_pred ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC---cEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCC
Q 002407 605 SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER---QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 605 ~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~---~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~ 681 (927)
.|+..|-.++|+|.....|++|+.||+|+|||++.+ .++....|...|+.|.|+....+|++|+.||+++|||++..
T Consensus 255 gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~ 334 (440)
T KOG0302|consen 255 GHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQF 334 (440)
T ss_pred ccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhc
Confidence 399999999999988899999999999999999988 56667888899999999999889999999999999999876
Q ss_pred eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc------------------ceEEEEeecCC
Q 002407 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID------------------LVHKFKGFRNT 743 (927)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~------------------~~~~~~~~~~~ 743 (927)
+.... ...++.|..+|+++.|+|.....|++++.|.+|.|||+.. .-+.+-.|...
T Consensus 335 ~~~~p------VA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ 408 (440)
T KOG0302|consen 335 KSGQP------VATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ 408 (440)
T ss_pred cCCCc------ceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecch
Confidence 54311 1223589999999999998888999999999999999311 11223334455
Q ss_pred cceEEEEEecCC-CEEEEEECCCcEEEEE
Q 002407 744 NSQISASLTANG-RYVVSASEDSYVYVWK 771 (927)
Q Consensus 744 ~~v~sv~fspdg-~~Lasgs~Dg~I~IWd 771 (927)
..+..+.|++.- -+|++.+.|| +.||.
T Consensus 409 ke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 409 KEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 667778898863 4788888888 66665
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-21 Score=215.67 Aligned_cols=248 Identities=19% Similarity=0.296 Sum_probs=201.6
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccc
Q 002407 458 SIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (927)
Q Consensus 458 ~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~ 536 (927)
.+..|+|.. +.++|||++..|.|.+||+....
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~----------------------------------------------- 121 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI----------------------------------------------- 121 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc-----------------------------------------------
Confidence 345677764 56799999999999999986421
Q ss_pred cccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEE
Q 002407 537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCI 613 (927)
Q Consensus 537 ~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v 613 (927)
..+.+..|..|...|+++.|++. .+|++|+.||+|++||++..+...++. ....|..|
T Consensus 122 -------------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV 182 (839)
T KOG0269|consen 122 -------------------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDV 182 (839)
T ss_pred -------------------cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhce
Confidence 11334567789999999999987 789999999999999999988877776 77889999
Q ss_pred EEccCCCCEEEEEECCCcEEEEeCCCCcE--EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccc
Q 002407 614 QFNPVDDRYFISGSLDAKVRIWSIPERQV--VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL 691 (927)
Q Consensus 614 ~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~--v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~ 691 (927)
+|+|..+++|+++...|.|++||++.... .++..|.+.|.++.|+|++.+||+|+.|+.|+|||+.+.+......+
T Consensus 183 ~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-- 260 (839)
T KOG0269|consen 183 KFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-- 260 (839)
T ss_pred eeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE--
Confidence 99998899999999999999999987543 35778889999999999999999999999999999987765544432
Q ss_pred ccccccCCCCCeEEEEEcCCCCcEEEEEE--CCCcEEEEECCcceEEE-EeecCCcceEEEEEec-CCCEEEEEECCCcE
Q 002407 692 QNKKKRSHQRKITGFQFAPGSSSEVLVTS--ADSRIRVVDGIDLVHKF-KGFRNTNSQISASLTA-NGRYVVSASEDSYV 767 (927)
Q Consensus 692 ~~~~~~~h~~~Vtsl~fspdg~~~Llsgs--~Dg~I~VwD~~~~~~~~-~~~~~~~~v~sv~fsp-dg~~Lasgs~Dg~I 767 (927)
....+|.++.|-|..+++|++++ .|..|+|||.+.....+ ....|...++.++|.. |-..|.+++.||.|
T Consensus 261 ------nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 261 ------NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred ------eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHH
Confidence 45678999999999988888875 68899999976544333 3334566677888865 45678999999999
Q ss_pred EEEECCCCCCcc
Q 002407 768 YVWKYEAESRPS 779 (927)
Q Consensus 768 ~IWdl~s~~~~~ 779 (927)
..-.+++...+.
T Consensus 335 ~qh~~knat~pi 346 (839)
T KOG0269|consen 335 LQHLFKNATTPI 346 (839)
T ss_pred HHhhhhcccChh
Confidence 888777765543
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-20 Score=199.89 Aligned_cols=250 Identities=16% Similarity=0.276 Sum_probs=190.7
Q ss_pred CCeEEEccCceEEEEeccCccccc-----ceeeeeEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcCccccee
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLT-----ALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGEL 494 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~-----~l~~~q~L~gH~~~I~~vafSpdG-~~LaSgs~DgtVrVWdv~~~~~~~~l 494 (927)
..+++++...+.|.+|+...-.-. ....-..|.||++.=..|+|++.. -+|++++.|++|++||+........
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~- 215 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDK- 215 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCc-
Confidence 345667777778888876432111 112223789999988899999954 3899999999999999865432100
Q ss_pred ecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEE
Q 002407 495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS 574 (927)
Q Consensus 495 ~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~ 574 (927)
.-.+...+.+|...|.+++
T Consensus 216 -------------------------------------------------------------~~~p~~~~~~h~~~VeDV~ 234 (422)
T KOG0264|consen 216 -------------------------------------------------------------VVDPKTIFSGHEDVVEDVA 234 (422)
T ss_pred -------------------------------------------------------------cccceEEeecCCcceehhh
Confidence 0145567889999999999
Q ss_pred ecCC--cEEEEEeCCCcEEEEeCCC--CcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC--cEEEecc
Q 002407 575 WSKS--QHLLSSSMDKTVRLWHLSS--KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--QVVDWND 647 (927)
Q Consensus 575 ~spd--~~L~Sgs~DgtV~lWDl~t--~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--~~v~~~~ 647 (927)
|++- ..|++++.|+.+.|||+++ .++.+... |...|+|++|+|.++.+|++|+.|++|++||+++. .+..+..
T Consensus 235 ~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~ 314 (422)
T KOG0264|consen 235 WHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG 314 (422)
T ss_pred ccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC
Confidence 9986 7899999999999999995 44444444 99999999999999999999999999999999874 3456777
Q ss_pred CCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCCeeeeecc--cccc---cccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 648 LHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSP--INLQ---NKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 648 ~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~--i~~~---~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
|...|..|.|+|+. ..|++++.|+.+.+||+..-...+... -..+ .-...+|...|..+.|+|..+..|++.+.
T Consensus 315 H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae 394 (422)
T KOG0264|consen 315 HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE 394 (422)
T ss_pred CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC
Confidence 88999999999964 578888999999999997532221100 0000 00114899999999999999988999999
Q ss_pred CCcEEEEECCc
Q 002407 722 DSRIRVVDGID 732 (927)
Q Consensus 722 Dg~I~VwD~~~ 732 (927)
|+.+.||....
T Consensus 395 DN~LqIW~~s~ 405 (422)
T KOG0264|consen 395 DNILQIWQMAE 405 (422)
T ss_pred CceEEEeeccc
Confidence 99999998543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-20 Score=202.98 Aligned_cols=305 Identities=17% Similarity=0.308 Sum_probs=222.7
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCC--CeecccccCCc
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP--TSLSPKHLDNH 526 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~--~~la~~~~~~~ 526 (927)
...+.||++.|.||...|.|.+||+|+.||+|+||.+.++.++..+.. ...|.+++|+|.+ .+|+++.....
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~------d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF------DSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee------cceeEEEEecCCCCceeEEEEecCce
Confidence 345789999999999999999999999999999999999999988752 2478899999874 34444433332
Q ss_pred eeee-cccccccc---cc-c-ccCcccc---cceEeecC-----CCceEEEccCCCCEEEEEecCC-cEEEEEeCC---C
Q 002407 527 LEKK-RRGRSINR---KS-L-SLDHMVV---PETVFALS-----DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---K 588 (927)
Q Consensus 527 i~~~-~~~~~~~~---~~-~-~~~~~~~---~~~v~~~s-----~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~D---g 588 (927)
+... ..+..+.. .. + ....... ....|.-. .+-++..-.|...|..|.|+.. .+|++...+ .
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 1111 11100000 00 0 0000000 01122221 2335666779999999999998 778877654 5
Q ss_pred cEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEE
Q 002407 589 TVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALV 666 (927)
Q Consensus 589 tV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~t 666 (927)
.|.|.++........|. ..+.|.++.|+| ...+|++++. ..|+|||+..+.++. ....-..|..++++|.|..|++
T Consensus 547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred eEEEEecccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 69999998877776665 678899999999 7777777665 679999998877665 4455578999999999999999
Q ss_pred EECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC--------c---ceE
Q 002407 667 GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI--------D---LVH 735 (927)
Q Consensus 667 gs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~--------~---~~~ 735 (927)
|+.|+.+..||+.-...... ..+.|...+++++|++.-+ ++++++.||++.||... . .+.
T Consensus 625 gs~d~k~~WfDldlsskPyk--------~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK 695 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYK--------TLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLK 695 (733)
T ss_pred ecCCCeeEEEEcccCcchhH--------Hhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeee
Confidence 99999999999976533222 2357899999999999876 89999999999998721 1 233
Q ss_pred EEEeecC--CcceEEEEEecCCCEEEEEECCCcEEEE
Q 002407 736 KFKGFRN--TNSQISASLTANGRYVVSASEDSYVYVW 770 (927)
Q Consensus 736 ~~~~~~~--~~~v~sv~fspdg~~Lasgs~Dg~I~IW 770 (927)
.+.+|.. ...|..+.|+|...+|++++.||+|++|
T Consensus 696 ~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 696 RLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 4444432 2447888999999999999999999998
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-19 Score=195.06 Aligned_cols=271 Identities=18% Similarity=0.298 Sum_probs=205.6
Q ss_pred eEEEccCceEEEEeccCccccc-ce-----------eeeeEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc
Q 002407 423 VSFHGQERVRVRQYGKSCKDLT-AL-----------YKCQEI-QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~-~l-----------~~~q~L-~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~ 489 (927)
+.++++.++.|.-|+..++.-. .. ...+.- ++|...|.+++.|+||+|||||+.|..|.||+..+.+
T Consensus 156 ~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e 235 (479)
T KOG0299|consen 156 RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE 235 (479)
T ss_pred ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccc
Confidence 5677777778877776655422 00 011111 3899999999999999999999999999999999988
Q ss_pred ccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCC-CceEEEccCCC
Q 002407 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLD 568 (927)
Q Consensus 490 ~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~~ 568 (927)
.+..+ .+|...|..++|.....-+.+++.+..+ .+|.+.. ..+.++.||.+
T Consensus 236 hv~~~-----~ghr~~V~~L~fr~gt~~lys~s~Drsv-----------------------kvw~~~~~s~vetlyGHqd 287 (479)
T KOG0299|consen 236 HVKVF-----KGHRGAVSSLAFRKGTSELYSASADRSV-----------------------KVWSIDQLSYVETLYGHQD 287 (479)
T ss_pred hhhcc-----cccccceeeeeeecCccceeeeecCCce-----------------------EEEehhHhHHHHHHhCCcc
Confidence 77764 6888999999998887777777677666 3444332 34567889999
Q ss_pred CEEEEEecCCcEEEEEe-CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc
Q 002407 569 DVLDLSWSKSQHLLSSS-MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND 647 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs-~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~ 647 (927)
.|..|....-.+++|.+ .|.++++|++.....+....+...+.|++|- +...|++|+.+|.|.+|++...+++....
T Consensus 288 ~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 288 GVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred ceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecccCceeEee
Confidence 99999887776666655 9999999999665555555688999999997 57789999999999999998887764321
Q ss_pred --C-----------CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 648 --L-----------HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 648 --~-----------~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
| +.+|++++..|...++++|+.+|.|++|-+..+-........ ....+-|++++|+++|..
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~------ls~~GfVNsl~f~~sgk~ 439 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYS------LSLVGFVNSLAFSNSGKR 439 (479)
T ss_pred ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeee------cccccEEEEEEEccCCCE
Confidence 1 138999999999999999999999999999987322211111 245678999999999985
Q ss_pred EEEEEECCCcEEEEE
Q 002407 715 EVLVTSADSRIRVVD 729 (927)
Q Consensus 715 ~Llsgs~Dg~I~VwD 729 (927)
+++..+....+--|-
T Consensus 440 ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 440 IVAGIGKEHRLGRWW 454 (479)
T ss_pred EEEecccccccceee
Confidence 455445555554453
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-18 Score=176.76 Aligned_cols=276 Identities=20% Similarity=0.207 Sum_probs=207.9
Q ss_pred eecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecCcCcccce
Q 002407 416 ATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGE 493 (927)
Q Consensus 416 a~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~--DgtVrVWdv~~~~~~~~ 493 (927)
.-++....+.+.+.+-.+++|+...+... +++..++-.|..++|......++.++. |.+||.-++.+.
T Consensus 21 ~fs~~G~~litss~dDsl~LYd~~~g~~~-----~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN----- 90 (311)
T KOG1446|consen 21 DFSDDGLLLITSSEDDSLRLYDSLSGKQV-----KTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN----- 90 (311)
T ss_pred EecCCCCEEEEecCCCeEEEEEcCCCcee-----eEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC-----
Confidence 33444455556666778889987665443 455666778889999877777776665 778887776443
Q ss_pred eecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEE
Q 002407 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (927)
Q Consensus 494 l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l 573 (927)
+.++.|.||...|+.|
T Consensus 91 ----------------------------------------------------------------kylRYF~GH~~~V~sL 106 (311)
T KOG1446|consen 91 ----------------------------------------------------------------KYLRYFPGHKKRVNSL 106 (311)
T ss_pred ----------------------------------------------------------------ceEEEcCCCCceEEEE
Confidence 4567788999999999
Q ss_pred EecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC--cEEEec----
Q 002407 574 SWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--QVVDWN---- 646 (927)
Q Consensus 574 ~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--~~v~~~---- 646 (927)
+.+|- ..+++++.|++|++||++..+|...+... .-..++|.| .|-+++++.....|++||++.- .+...+
T Consensus 107 ~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~ 184 (311)
T KOG1446|consen 107 SVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GRPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITD 184 (311)
T ss_pred EecCCCCeEEecccCCeEEeeEecCCCCceEEecC-CCcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCC
Confidence 99996 88999999999999999998888776532 234578999 9999999988889999999863 122211
Q ss_pred cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 647 ~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
......+.+.|+|||++++.++..+.+++.|.-+|..+..+.... ....--....|.|+++ ++++|+.||+|.
T Consensus 185 ~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~------~~~~~~~~a~ftPds~-Fvl~gs~dg~i~ 257 (311)
T KOG1446|consen 185 NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP------NAGNLPLSATFTPDSK-FVLSGSDDGTIH 257 (311)
T ss_pred CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc------CCCCcceeEEECCCCc-EEEEecCCCcEE
Confidence 334689999999999999999999999999999999887765421 1111225678999987 899999999999
Q ss_pred EEECCcceEEEEeec-CCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 727 VVDGIDLVHKFKGFR-NTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 727 VwD~~~~~~~~~~~~-~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
+|+............ +..++.++.|+|.-..++++ +..+.+|=.....
T Consensus 258 vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 258 VWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDEDA 306 (311)
T ss_pred EEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccccc
Confidence 999765444443333 57788899999976666655 5678889766443
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.8e-19 Score=202.92 Aligned_cols=251 Identities=18% Similarity=0.282 Sum_probs=199.8
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
.+|++.-+.|+|.|+|.+|++++.||.|++|+........+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t-------------------------------------- 51 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET-------------------------------------- 51 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch--------------------------------------
Confidence 479999999999999999999999999999997654211110
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceE
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVT 611 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~ 611 (927)
+.-+...|.+++... ++|++++.+++|.+|.+..++.-..+. .+-++.
T Consensus 52 ------------------------------i~~~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r 100 (933)
T KOG1274|consen 52 ------------------------------IDISGELVSSIACYS-NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIR 100 (933)
T ss_pred ------------------------------hhccCceeEEEeecc-cceEEeeccceEEEeeCCCCCccceeeeeeccce
Confidence 001445566665432 589999999999999999988765554 788999
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEeCCCCcE-EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccc
Q 002407 612 CIQFNPVDDRYFISGSLDAKVRIWSIPERQV-VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN 690 (927)
Q Consensus 612 ~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~-v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~ 690 (927)
+++|+. +|++++.|+.|-.|++.++.+... .....|..+|.++.|+|.+++||+.+-||.|+|||+.++.+...+...
T Consensus 101 ~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v 179 (933)
T KOG1274|consen 101 DLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGV 179 (933)
T ss_pred EEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccC
Confidence 999998 999999999999999999987654 456778899999999999999999999999999999998877665421
Q ss_pred cccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEe--ecCCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 691 LQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKG--FRNTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 691 ~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~--~~~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
.. .........++.++|+|++. .+++...|+.|.+|+.......+.. ..+...+..+.|+|+|+|||+++.||.|.
T Consensus 180 ~k-~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~ 257 (933)
T KOG1274|consen 180 DK-DNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQIL 257 (933)
T ss_pred Cc-cccccccceeeeeeecCCCC-eEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEE
Confidence 11 11112245677889999977 6888899999999996655544443 33344488999999999999999999999
Q ss_pred EEECCCC
Q 002407 769 VWKYEAE 775 (927)
Q Consensus 769 IWdl~s~ 775 (927)
|||.++-
T Consensus 258 vWnv~t~ 264 (933)
T KOG1274|consen 258 VWNVDTH 264 (933)
T ss_pred EEecccc
Confidence 9999973
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=185.87 Aligned_cols=278 Identities=18% Similarity=0.282 Sum_probs=206.6
Q ss_pred cCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC------cCccc
Q 002407 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV------ESERK 491 (927)
Q Consensus 418 ~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~------~~~~~ 491 (927)
+..+.++.+.+.+-+-++|...++. |..++.||.+.|++|+|++.+.+++|++.|++.+||... .....
T Consensus 157 ~~tqpi~gtASADhTA~iWs~Esg~-----CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~ 231 (481)
T KOG0300|consen 157 DSTQPICGTASADHTARIWSLESGA-----CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAP 231 (481)
T ss_pred hcCCcceeecccccceeEEeecccc-----ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCC
Confidence 4445577778888899999877664 345568999999999999999999999999999999831 10000
Q ss_pred c------ee-----------------------ecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccc
Q 002407 492 G------EL-----------------------LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLS 542 (927)
Q Consensus 492 ~------~l-----------------------~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~ 542 (927)
. +. ......+|...|.++.|...+..++++..+...
T Consensus 232 ~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA--------------- 296 (481)
T KOG0300|consen 232 SDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA--------------- 296 (481)
T ss_pred CCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc---------------
Confidence 0 00 000112333333444444444444333333221
Q ss_pred cCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC-cEEEEEe-cCCceEEEEEccC
Q 002407 543 LDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK-TCLKIFS-HSDYVTCIQFNPV 618 (927)
Q Consensus 543 ~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~-~~~~~~~-h~~~V~~v~fsp~ 618 (927)
.+|+. .+.++..+.||....+.++-+|. .++++++.|.+.++||++.. +.+..|. |++.|+++.|.-
T Consensus 297 --------nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~- 367 (481)
T KOG0300|consen 297 --------NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT- 367 (481)
T ss_pred --------eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec-
Confidence 45554 56888999999999999999998 66889999999999999843 3455666 999999999985
Q ss_pred CCCEEEEEECCCcEEEEeCCCC-cEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccccc
Q 002407 619 DDRYFISGSLDAKVRIWSIPER-QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKR 697 (927)
Q Consensus 619 dg~~L~sgs~Dg~I~IWDl~t~-~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~ 697 (927)
+..+++|+.|.+|++||+++. ..+..+.....++.++++..++.|+.-..+..|++||++...+... +.....
T Consensus 368 -dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl-----PrtsRq 441 (481)
T KOG0300|consen 368 -DDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL-----PRTSRQ 441 (481)
T ss_pred -CCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccC-----Cccccc
Confidence 567999999999999999885 4566777888999999999999999999999999999987765432 122346
Q ss_pred CCCCCeEEEEEcCCCC-cEEEEEECCCcEEEEEC
Q 002407 698 SHQRKITGFQFAPGSS-SEVLVTSADSRIRVVDG 730 (927)
Q Consensus 698 ~h~~~Vtsl~fspdg~-~~Llsgs~Dg~I~VwD~ 730 (927)
+|...|+|++|..+-+ .-|++++.|..+.-|..
T Consensus 442 gHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 442 GHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred ccceeeeeeeccccCcccccccccccceeeeeEe
Confidence 8999999999986532 24889999999999974
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.1e-19 Score=182.49 Aligned_cols=234 Identities=21% Similarity=0.264 Sum_probs=190.1
Q ss_pred eeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEecCcCcc
Q 002407 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR--YLASAGEDCVIHVWQVVESER 490 (927)
Q Consensus 413 ~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~--~LaSgs~DgtVrVWdv~~~~~ 490 (927)
.+++..-...++++|+.+-+|++|+.+.+. ..+.|-.|.+.|+++.|.++-. .|++|+.||.|.+|++...
T Consensus 45 sitavAVs~~~~aSGssDetI~IYDm~k~~-----qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-- 117 (362)
T KOG0294|consen 45 SITALAVSGPYVASGSSDETIHIYDMRKRK-----QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-- 117 (362)
T ss_pred ceeEEEecceeEeccCCCCcEEEEeccchh-----hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe--
Confidence 355566667789999999999999976443 3356678999999999999765 8999999999999997543
Q ss_pred cceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCE
Q 002407 491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570 (927)
Q Consensus 491 ~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V 570 (927)
..+..+++|.+.|
T Consensus 118 -------------------------------------------------------------------~~~~slK~H~~~V 130 (362)
T KOG0294|consen 118 -------------------------------------------------------------------ELLKSLKAHKGQV 130 (362)
T ss_pred -------------------------------------------------------------------EEeeeeccccccc
Confidence 2345678899999
Q ss_pred EEEEecCCcE-EEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC
Q 002407 571 LDLSWSKSQH-LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH 649 (927)
Q Consensus 571 ~~l~~spd~~-L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~ 649 (927)
+.|+.+|.+. -++.+.|+.+++||+-.|+.-.........+.|.|+| .|.+|+.+..+ .|-+|.+.+..+......+
T Consensus 131 t~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~-~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~ 208 (362)
T KOG0294|consen 131 TDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP-QGDHFVVSGRN-KIDIYQLDNASVFREIENP 208 (362)
T ss_pred ceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC-CCCEEEEEecc-EEEEEecccHhHhhhhhcc
Confidence 9999999955 5688999999999999998877777666666799999 88888877764 5899999988877766666
Q ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC-CCcEEEEEECCCcEEEE
Q 002407 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG-SSSEVLVTSADSRIRVV 728 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd-g~~~Llsgs~Dg~I~Vw 728 (927)
..+.++.|. ++..|++|..++.|.+||.........+ .+|..+|.++.+..+ ...+|++++.||.|+||
T Consensus 209 ~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~---------~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vW 278 (362)
T KOG0294|consen 209 KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEF---------LAHENRVKDIASYTNPEHEYLVTASSDGFIKVW 278 (362)
T ss_pred ccceeeeec-CCceEEEecCCceEEEeccCCCccceee---------ecchhheeeeEEEecCCceEEEEeccCceEEEE
Confidence 777777775 4668999999999999999986666554 589999999984432 33589999999999999
Q ss_pred ECCc
Q 002407 729 DGID 732 (927)
Q Consensus 729 D~~~ 732 (927)
|...
T Consensus 279 d~~~ 282 (362)
T KOG0294|consen 279 DIDM 282 (362)
T ss_pred Eccc
Confidence 9543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-19 Score=191.24 Aligned_cols=278 Identities=13% Similarity=0.211 Sum_probs=202.2
Q ss_pred CCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc--EEEEEe-cCCceEEEEEccCCCC-EEEEEECCCcEEEEeCCCCc
Q 002407 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT--CLKIFS-HSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 567 ~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~--~~~~~~-h~~~V~~v~fsp~dg~-~L~sgs~Dg~I~IWDl~t~~ 641 (927)
.+.|+++.|+|. ..|++++.|++++||.+.... .++.+. ...+|.+..|.| +|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC-CCceEEEecccceEEEEeeccccc
Confidence 468999999999 889999999999999987543 334333 678999999999 777 89999999999999999987
Q ss_pred EEEeccC----CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEE
Q 002407 642 VVDWNDL----HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (927)
Q Consensus 642 ~v~~~~~----~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Ll 717 (927)
+..+... +..+....++|++++|++.+..|.|.+....++.++..+. ..+.|..++|+.++. .|+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K----------ieG~v~~~~fsSdsk-~l~ 360 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK----------IEGVVSDFTFSSDSK-ELL 360 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee----------eccEEeeEEEecCCc-EEE
Confidence 6653322 2367788899999999999999999999999998887753 457799999999886 888
Q ss_pred EEECCCcEEEEECCcc--eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecC
Q 002407 718 VTSADSRIRVVDGIDL--VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHC 795 (927)
Q Consensus 718 sgs~Dg~I~VwD~~~~--~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~ 795 (927)
+++.+|.|.+||++.. +..+... ....-+++|.++++.|||+|+..|.|.|||.++.......+++....
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d------- 432 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD------- 432 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh-------
Confidence 8999999999997654 3333332 22344678889999999999999999999987632211111110000
Q ss_pred CCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccc---------cCc
Q 002407 796 QDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYF---------FDR 866 (927)
Q Consensus 796 ~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~---------~d~ 866 (927)
+.+ ..++.++|+||+.+||.++..-- ...
T Consensus 433 -NLt-----------------------------------------t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T 470 (514)
T KOG2055|consen 433 -NLT-----------------------------------------TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT 470 (514)
T ss_pred -hhh-----------------------------------------eeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence 000 11233456777777666552100 001
Q ss_pred cccccCchhhccccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 867 ISATWPEEKLVLTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 867 ~v~~W~~e~l~~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
+..-||+... .+.+..|++|||.|-+++.|..+|++.+|+
T Consensus 471 VFsNfP~~n~-------------~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 471 VFSNFPTSNT-------------KVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred eeccCCCCCC-------------cccceEEEEecCCCceEEeecCCCceeeEe
Confidence 2334554321 112222689999999999999999999998
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=189.36 Aligned_cols=204 Identities=20% Similarity=0.296 Sum_probs=170.7
Q ss_pred CCCCEEEEEecCCcEEEEEe-CCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC----
Q 002407 566 HLDDVLDLSWSKSQHLLSSS-MDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE---- 639 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs-~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t---- 639 (927)
-.++|.+++-+|.++++.++ ..+.|++|.+.+|..+.++. |-..|+|+.|+- |+.+|++|+.||.|.+|.+..
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeeccc
Confidence 46789999999996655555 99999999999999998887 999999999998 999999999999999998732
Q ss_pred -----CcE-EEeccCCCcEEEEEECCC--CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 640 -----RQV-VDWNDLHEMVTAACYTPD--GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 640 -----~~~-v~~~~~~~~V~sla~spd--g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
-+. ..+..|.-.|+.+...+. ..+|++++.|.+|++||+..+.++..+ .....+++++..|.
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti----------~fp~si~av~lDpa 228 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI----------TFPSSIKAVALDPA 228 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE----------ecCCcceeEEEccc
Confidence 122 245666678999988765 468999999999999999999988875 34567999999997
Q ss_pred CCcEEEEEECCCcEEEEECC------------------cceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 712 SSSEVLVTSADSRIRVVDGI------------------DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD~~------------------~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
.. .+.+|+.+|.|.+.+.. +....+.++.+...|++++++-||.+|++|+.||.|+|||+.
T Consensus 229 e~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 229 ER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred cc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 65 89999999999998722 234456667666799999999999999999999999999998
Q ss_pred CCCCcccc
Q 002407 774 AESRPSRS 781 (927)
Q Consensus 774 s~~~~~~~ 781 (927)
+.+...+.
T Consensus 308 S~Q~iRtl 315 (476)
T KOG0646|consen 308 SKQCIRTL 315 (476)
T ss_pred hHHHHHHH
Confidence 86655443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-18 Score=203.75 Aligned_cols=246 Identities=22% Similarity=0.333 Sum_probs=195.5
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCccccee--------------ecccccCccccEEEEccCCCCC
Q 002407 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL--------------LEKQEDGHLNMLLLANGSPEPT 516 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l--------------~~~~~~~~~~~v~~v~~spd~~ 516 (927)
+...|.+.|+|+.|+|||+|||+|++|+.|.||+.... ..... ......+|...|.-+.|+|++.
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS 142 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeeccc-CCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence 34679999999999999999999999999999998741 00000 0112356888899999999999
Q ss_pred eecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeC
Q 002407 517 SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL 595 (927)
Q Consensus 517 ~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl 595 (927)
++++++.++.+..+.. .+.+.+..+.+|.+.|..+.|.|- .+|++-+.|++|+||++
T Consensus 143 ~lvS~s~DnsViiwn~----------------------~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt 200 (942)
T KOG0973|consen 143 LLVSVSLDNSVIIWNA----------------------KTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRT 200 (942)
T ss_pred EEEEecccceEEEEcc----------------------ccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEc
Confidence 9999999988743321 123678889999999999999998 78999999999999998
Q ss_pred CCCcEEEEEe-------cCCceEEEEEccCCCCEEEEEEC----CCcEEEEeCCCCc-EEEeccCCCcEEEEEECCC---
Q 002407 596 SSKTCLKIFS-------HSDYVTCIQFNPVDDRYFISGSL----DAKVRIWSIPERQ-VVDWNDLHEMVTAACYTPD--- 660 (927)
Q Consensus 596 ~t~~~~~~~~-------h~~~V~~v~fsp~dg~~L~sgs~----Dg~I~IWDl~t~~-~v~~~~~~~~V~sla~spd--- 660 (927)
....+.+.+. ....+.-+.|+| ||++|++.-. -..+.|.+-.+-+ -..+.+|..++.++.|+|.
T Consensus 201 ~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe 279 (942)
T KOG0973|consen 201 SDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFE 279 (942)
T ss_pred ccceeeEeeccchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhc
Confidence 8777776664 345688999999 9999998643 2347787766655 3457889999999999981
Q ss_pred --CC------------EEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 661 --GQ------------GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 661 --g~------------~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
.+ .+|+|+.|++|.||.....+.+.... .-....|..++|+|+|- .|++++.||+|.
T Consensus 280 ~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~--------~lf~~SI~DmsWspdG~-~LfacS~DGtV~ 350 (942)
T KOG0973|consen 280 RNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH--------NLFNKSIVDMSWSPDGF-SLFACSLDGTVA 350 (942)
T ss_pred cccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh--------hhhcCceeeeeEcCCCC-eEEEEecCCeEE
Confidence 11 68899999999999987666554432 24567899999999987 799999999999
Q ss_pred EEE
Q 002407 727 VVD 729 (927)
Q Consensus 727 VwD 729 (927)
++.
T Consensus 351 ~i~ 353 (942)
T KOG0973|consen 351 LIH 353 (942)
T ss_pred EEE
Confidence 987
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.5e-19 Score=191.05 Aligned_cols=243 Identities=19% Similarity=0.269 Sum_probs=192.3
Q ss_pred eeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCccc
Q 002407 412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERK 491 (927)
Q Consensus 412 ~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~ 491 (927)
..+.+.+....+++.|...+.+.+|...++.+...+ .+|-..|+|+.|+-||.+|+|||.||.|.+|.+..--
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-----~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv-- 156 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-----SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV-- 156 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-----HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec--
Confidence 334444555567788889999999999999876554 7999999999999999999999999999999874311
Q ss_pred ceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEE
Q 002407 492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL 571 (927)
Q Consensus 492 ~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~ 571 (927)
....+ ...++++.|..|.-+|+
T Consensus 157 ----------------------------~a~~~------------------------------~~~~p~~~f~~HtlsIT 178 (476)
T KOG0646|consen 157 ----------------------------SADND------------------------------HSVKPLHIFSDHTLSIT 178 (476)
T ss_pred ----------------------------ccccC------------------------------CCccceeeeccCcceeE
Confidence 00000 03378889999999999
Q ss_pred EEEecCC---cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc-------
Q 002407 572 DLSWSKS---QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ------- 641 (927)
Q Consensus 572 ~l~~spd---~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~------- 641 (927)
++...+. .+|+|+|.|.++++||+..+..+..+.....+.+++..| .+..++.|+.+|.|.+.++..-.
T Consensus 179 Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~ 257 (476)
T KOG0646|consen 179 DLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVN 257 (476)
T ss_pred EEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCccccccc
Confidence 9998764 789999999999999999999999999999999999999 99999999999999988774321
Q ss_pred ----------EEEeccCCC--cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc
Q 002407 642 ----------VVDWNDLHE--MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 642 ----------~v~~~~~~~--~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
......|.+ .|+|++++-||..|++|+.||.+.|||+...+++.+.. ...++|+.+++.
T Consensus 258 ~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~---------~~kgpVtnL~i~ 328 (476)
T KOG0646|consen 258 QKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ---------TSKGPVTNLQIN 328 (476)
T ss_pred ccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh---------hhccccceeEee
Confidence 122445555 89999999999999999999999999999988887753 256789999886
Q ss_pred CCCCcEEEEEECCCcEEEEE
Q 002407 710 PGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 710 pdg~~~Llsgs~Dg~I~VwD 729 (927)
|--+..++.-.....+-.|+
T Consensus 329 ~~~~~~~l~~~~~ps~~~~~ 348 (476)
T KOG0646|consen 329 PLERGIILFEHKQPSLPNPH 348 (476)
T ss_pred ccccceecccccCccCCchH
Confidence 64332233333333344444
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=182.51 Aligned_cols=274 Identities=12% Similarity=0.094 Sum_probs=184.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEE-EEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYF-ISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACY 657 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L-~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~ 657 (927)
..+++++.|+.|++||+.+++++..+.+...+.+++|+| ++..+ ++++.++.|++||+.+++.+..+.....+..++|
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL 80 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence 357889999999999999999988888656678899999 88766 5677889999999999888765555555678999
Q ss_pred CCCCCEEEEE-ECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC-cEEEEECCcceE
Q 002407 658 TPDGQGALVG-SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS-RIRVVDGIDLVH 735 (927)
Q Consensus 658 spdg~~l~tg-s~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg-~I~VwD~~~~~~ 735 (927)
+|+++.++++ ..++.|++||+.+.+.+..+. ....+.+++|+|++. +++++..++ .+.+||......
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~----------~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIETRKVLAEIP----------VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYEI 149 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCeEEeEee----------CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCeE
Confidence 9999987665 458999999999877655432 223467899999987 666666654 577789654333
Q ss_pred EEEeecCCcceEEEEEecCCCEEEEE-ECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeec
Q 002407 736 KFKGFRNTNSQISASLTANGRYVVSA-SEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQ 814 (927)
Q Consensus 736 ~~~~~~~~~~v~sv~fspdg~~Lasg-s~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~ 814 (927)
..... .......++|++++++|+.+ ..++.|++||+.+++..... .+... +.
T Consensus 150 ~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~----------~~~~~---------~~------- 202 (300)
T TIGR03866 150 VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKI----------TFEIP---------GV------- 202 (300)
T ss_pred EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeee----------eeccc---------cc-------
Confidence 22211 22345678999999988655 46899999999875422111 00000 00
Q ss_pred CCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccccccCCCceecccCCC
Q 002407 815 DTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTARNRSPRTSLDISNG 894 (927)
Q Consensus 815 d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~~~~~s~v~s~~~~~~ 894 (927)
++. ......+.|+|++++++.+. ..+..+.+|+.+......... .. ...
T Consensus 203 ------------~~~----------~~~~~~i~~s~dg~~~~~~~---~~~~~i~v~d~~~~~~~~~~~--~~--~~~-- 251 (300)
T TIGR03866 203 ------------HPE----------AVQPVGIKLTKDGKTAFVAL---GPANRVAVVDAKTYEVLDYLL--VG--QRV-- 251 (300)
T ss_pred ------------ccc----------cCCccceEECCCCCEEEEEc---CCCCeEEEEECCCCcEEEEEE--eC--CCc--
Confidence 000 01111245899999866543 123467888865432211000 00 001
Q ss_pred CCcccCCCCCEEEEE-cCCCcEEEeecCC
Q 002407 895 ISSSISAWGMVIVTA-GLRGEIRAYQNFG 922 (927)
Q Consensus 895 ~~~a~S~dG~vLvTg-s~DG~IrvW~~~g 922 (927)
.+++|+|+|+.|+++ +.+|+|++|+.-+
T Consensus 252 ~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 252 WQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred ceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 157899999998876 5799999999543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-18 Score=186.25 Aligned_cols=287 Identities=16% Similarity=0.207 Sum_probs=213.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCC-eecccccCCceeeecccc
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKKRRGR 534 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~-~la~~~~~~~i~~~~~~~ 534 (927)
.+.|++|.|+|.-.+|++||.|++++||.+...... .+.. ..-...++.++.|.|+|. .+++++....+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS--~~l~~fPi~~a~f~p~G~~~i~~s~rrky~y------ 283 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQS--IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLY------ 283 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-hhee--eeeccCccceeeecCCCceEEEecccceEEE------
Confidence 578999999999999999999999999998754322 1111 122346788899999988 666665554442
Q ss_pred cccccccccCcccccceEeecCCC---ceEEEccCC-CCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCc
Q 002407 535 SINRKSLSLDHMVVPETVFALSDK---PICSFQGHL-DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY 609 (927)
Q Consensus 535 ~~~~~~~~~~~~~~~~~v~~~s~k---~i~~l~gH~-~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~ 609 (927)
.|++... .+..+.|+. ..+.....+++ ++|+..+..|.|.|....+++.+..+...+.
T Consensus 284 -----------------syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~ 346 (514)
T KOG2055|consen 284 -----------------SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV 346 (514)
T ss_pred -----------------EeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccE
Confidence 2333222 222233443 34566677887 8899999999999999999999999999999
Q ss_pred eEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCc--EEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM--VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 610 V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~--V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
|..++|+. +++.|++++.+|.|.+||++...++..+...+. -+++|.++++.+||+|+..|.|.|||..+.......
T Consensus 347 v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P 425 (514)
T KOG2055|consen 347 VSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP 425 (514)
T ss_pred EeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCC
Confidence 99999998 999999999999999999999988876655554 467888899999999999999999997653221111
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEE--CCCcEEEEECCcce--EEEEe-ecCCcceEEEEEecCCCEEEEEE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS--ADSRIRVVDGIDLV--HKFKG-FRNTNSQISASLTANGRYVVSAS 762 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs--~Dg~I~VwD~~~~~--~~~~~-~~~~~~v~sv~fspdg~~Lasgs 762 (927)
.+.+........|+.++|+++.. +|+.++ .+..+++.....+. ..+.. ...-+.+++++|+|.+-+||.|.
T Consensus 426 ---kPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 426 ---KPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred ---CchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 11112234567899999999986 666665 46778887743321 11111 12345689999999999999999
Q ss_pred CCCcEEEEECC
Q 002407 763 EDSYVYVWKYE 773 (927)
Q Consensus 763 ~Dg~I~IWdl~ 773 (927)
.+|.|.+|.+.
T Consensus 502 e~grv~l~kL~ 512 (514)
T KOG2055|consen 502 EAGRVHLFKLH 512 (514)
T ss_pred CCCceeeEeec
Confidence 99999999874
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-19 Score=191.97 Aligned_cols=207 Identities=20% Similarity=0.290 Sum_probs=165.1
Q ss_pred EccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC
Q 002407 563 FQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE 639 (927)
Q Consensus 563 l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t 639 (927)
-.+|++.|.+|+|... +.|++||.|++|++||+.++++..++. |...|.++.|+|....+|++|+.|++|.+.|.+.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 4579999999999987 789999999999999999999999999 8999999999999999999999999999999985
Q ss_pred Cc-EEEeccCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCC-eeeeecccccccccccCCCCCeEEEEEcCCCCcEE
Q 002407 640 RQ-VVDWNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSEN-KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEV 716 (927)
Q Consensus 640 ~~-~v~~~~~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~-~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~L 716 (927)
.. .-......+.|-.++|.|.. ..+++++.||+|+-+|++.. +.+.+. +.|...|.++.+++..+.++
T Consensus 319 ~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~---------~AHd~~ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 319 PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL---------KAHDDEISGLSVNIQTPGLL 389 (463)
T ss_pred ccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE---------EeccCCcceEEecCCCCcce
Confidence 22 22234456789999999955 56888889999999999986 444443 58999999999999988899
Q ss_pred EEEECCCcEEEEECCcceE-EEEeec-CCcceEEEEEecCCC-EEEEEECCCcEEEEECCCCCCc
Q 002407 717 LVTSADSRIRVVDGIDLVH-KFKGFR-NTNSQISASLTANGR-YVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 717 lsgs~Dg~I~VwD~~~~~~-~~~~~~-~~~~v~sv~fspdg~-~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
++++.|+.|++|+...-.. ....+. .-+...|+++.|+-. +|+.|+..+.++|||+.+....
T Consensus 390 ~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 390 STASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 9999999999999432111 111110 112245666667654 5677888888999999886543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.9e-18 Score=173.92 Aligned_cols=249 Identities=20% Similarity=0.314 Sum_probs=185.0
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
.+|.+-|.|+.|.+-|+.+|||+.|++|+|||........
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W---------------------------------------- 49 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTW---------------------------------------- 49 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCce----------------------------------------
Confidence 5899999999999999999999999999999975432111
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC-C--cEEEEEeCCCcEEEEeCCCC-------c--E
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-S--QHLLSSSMDKTVRLWHLSSK-------T--C 600 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp-d--~~L~Sgs~DgtV~lWDl~t~-------~--~ 600 (927)
......+.|.+.|..+.|.+ . +.+++++.|++|.||.-... + .
T Consensus 50 -------------------------~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~ 104 (361)
T KOG2445|consen 50 -------------------------SCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVR 104 (361)
T ss_pred -------------------------EEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEE
Confidence 12234567999999999965 4 56899999999999975211 1 1
Q ss_pred EEEEe-cCCceEEEEEccC-CCCEEEEEECCCcEEEEeCCCCcEE-E-----ec--------cCCCcEEEEEECC---CC
Q 002407 601 LKIFS-HSDYVTCIQFNPV-DDRYFISGSLDAKVRIWSIPERQVV-D-----WN--------DLHEMVTAACYTP---DG 661 (927)
Q Consensus 601 ~~~~~-h~~~V~~v~fsp~-dg~~L~sgs~Dg~I~IWDl~t~~~v-~-----~~--------~~~~~V~sla~sp---dg 661 (927)
..++. ....|+.|+|.|. -|-.|++++.||.||||+.....-+ . .+ .++....|+.|+| ..
T Consensus 105 ~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~ 184 (361)
T KOG2445|consen 105 RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHE 184 (361)
T ss_pred EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccC
Confidence 22222 6788999999994 3667999999999999987653211 1 11 2345778999997 35
Q ss_pred CEEEEEECC-----CeEEEEECCCCe--eeeecccccccccccCCCCCeEEEEEcCCCC---cEEEEEECCCcEEEEECC
Q 002407 662 QGALVGSYK-----GSCHLYNTSENK--LQQKSPINLQNKKKRSHQRKITGFQFAPGSS---SEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 662 ~~l~tgs~D-----g~I~IwDl~~~~--~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~---~~Llsgs~Dg~I~VwD~~ 731 (927)
.+|++|+.+ +.++||....+. ...... ...|..+|+.++|.|.-. .+|++++.|| |+||...
T Consensus 185 p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~-------L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 185 PLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE-------LPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVK 256 (361)
T ss_pred ceEEEEcccCCccccceEEEEecCCcceeeeehh-------cCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEe
Confidence 689998876 578888776543 222222 248999999999999632 3788899999 9999843
Q ss_pred c-------------------ceEEEE-eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 732 D-------------------LVHKFK-GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 732 ~-------------------~~~~~~-~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
. .+.++. ...|...+..+.|+-.|..|++.+.||.|++|...-
T Consensus 257 ~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 257 VARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred eccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 1 122222 234567899999999999999999999999998643
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-18 Score=174.51 Aligned_cols=267 Identities=19% Similarity=0.213 Sum_probs=205.5
Q ss_pred CccccEEEEccCC-CCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 501 GHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 501 ~~~~~v~~v~~sp-d~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
.....|..++|+| ...++++++.++.+..+...... .. .+ .....|.++|.+++|+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g---------~~----------~~-ka~~~~~~PvL~v~Wsddg 84 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG---------QL----------VP-KAQQSHDGPVLDVCWSDDG 84 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCC---------cc----------cc-hhhhccCCCeEEEEEccCC
Confidence 3456788999999 46677788888888555432210 00 01 233568999999999999
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCC--EEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDR--YFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAAC 656 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~--~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla 656 (927)
..+++|+.|+.+++||+.+++..++-.|..+|.++.|-+ ... .|++|+.|.+|+.||.+....+.....++.+.++.
T Consensus 85 skVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~D 163 (347)
T KOG0647|consen 85 SKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAAD 163 (347)
T ss_pred ceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehh
Confidence 789999999999999999998888888999999999987 555 79999999999999999999999999999988876
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC----c
Q 002407 657 YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI----D 732 (927)
Q Consensus 657 ~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~----~ 732 (927)
.- ..+++++..+..|.+|+++++....... .......+.|++..++.. ..+.|+-+|.+.|.... .
T Consensus 164 v~--~pm~vVata~r~i~vynL~n~~te~k~~-------~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~~~~~ 233 (347)
T KOG0647|consen 164 VL--YPMAVVATAERHIAVYNLENPPTEFKRI-------ESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQYIDDPNPK 233 (347)
T ss_pred cc--CceeEEEecCCcEEEEEcCCCcchhhhh-------cCcccceeeEEEEEecCC-ceEeeeecceEEEEecCCCCcc
Confidence 54 4589999999999999998765443321 123445688999998877 46999999999987643 2
Q ss_pred ceEEEEeecC-------CcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCe
Q 002407 733 LVHKFKGFRN-------TNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDV 798 (927)
Q Consensus 733 ~~~~~~~~~~-------~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v 798 (927)
..-.|+.|.. --.|.+++|+|.-..|+|++.||++.+||-+...++.....+.....+-.|+.++.
T Consensus 234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGS 306 (347)
T ss_pred CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCC
Confidence 3445666653 22466899999999999999999999999887766665555555555555555443
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-17 Score=160.92 Aligned_cols=264 Identities=14% Similarity=0.143 Sum_probs=194.6
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
.....|.+++|+|.|.+.|.|+...+.+|-....-..+.. .|....
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~-------~hea~~--------------------------- 75 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRH-------AHEAAK--------------------------- 75 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCccc-------cccccc---------------------------
Confidence 3566899999999999999999999999876533211110 000000
Q ss_pred ccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEE-----EEEe-c
Q 002407 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL-----KIFS-H 606 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~-----~~~~-h 606 (927)
..|. .....-+.|.+.|.|.+|+|+ .+|++|+.|++|++.-+....+. ..|. |
T Consensus 76 -------------~pp~-------v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmh 135 (350)
T KOG0641|consen 76 -------------QPPS-------VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMH 135 (350)
T ss_pred -------------CCCe-------EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeec
Confidence 0000 011223468999999999999 77899999999999876644332 2233 9
Q ss_pred CCceEEEEEccC---CCCEEEEEE-CCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCC
Q 002407 607 SDYVTCIQFNPV---DDRYFISGS-LDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 607 ~~~V~~v~fsp~---dg~~L~sgs-~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~ 681 (927)
.+.|..++|... .+.+|++++ .|..|++-|...++... ...|.+.|.++ ++-+|-++++|+.|.+|++||++-.
T Consensus 136 dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~ 214 (350)
T KOG0641|consen 136 DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVN 214 (350)
T ss_pred CCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeecc
Confidence 999999999641 245666654 36677777888888766 44555666655 4556889999999999999999988
Q ss_pred eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEE
Q 002407 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasg 761 (927)
.++......... .--....|.+++..|.|. +|++|-.|....+||.+........+.+...|.++.|+|...||+++
T Consensus 215 ~~v~~l~~~~~~--~glessavaav~vdpsgr-ll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~ 291 (350)
T KOG0641|consen 215 SCVNTLDNDFHD--GGLESSAVAAVAVDPSGR-LLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC 291 (350)
T ss_pred ceeeeccCcccC--CCcccceeEEEEECCCcc-eeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe
Confidence 877765432211 011236799999999987 89999999999999977666666667788899999999999999999
Q ss_pred ECCCcEEEEECCCC
Q 002407 762 SEDSYVYVWKYEAE 775 (927)
Q Consensus 762 s~Dg~I~IWdl~s~ 775 (927)
+.|..|++=|+...
T Consensus 292 syd~~ikltdlqgd 305 (350)
T KOG0641|consen 292 SYDMKIKLTDLQGD 305 (350)
T ss_pred cccceEEEeecccc
Confidence 99999999999764
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-20 Score=207.98 Aligned_cols=236 Identities=24% Similarity=0.431 Sum_probs=203.4
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
+++.+|...|.|+..-..++.+++|+.|..+-+|.+...
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp----------------------------------------- 60 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP----------------------------------------- 60 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCC-----------------------------------------
Confidence 445689999999999778899999999999999976432
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~ 607 (927)
..+..|.+|..+|.+|.|++. .+|++|+.+|+|++||++..+.++++. |.
T Consensus 61 ----------------------------~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~ 112 (825)
T KOG0267|consen 61 ----------------------------NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHL 112 (825)
T ss_pred ----------------------------chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccc
Confidence 122247789999999999998 778899999999999999999888776 99
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
..+..++|+| -+.|+++|+.|..+++||++..-+... ..|...+..+.|+|+|++++.|+.|..++|||+..+++...
T Consensus 113 ~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e 191 (825)
T KOG0267|consen 113 LNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE 191 (825)
T ss_pred cCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccc
Confidence 9999999999 899999999999999999996655554 44567788999999999999999999999999999998887
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS 765 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg 765 (927)
+ ..|...+..+.|+|.. .++..|+.|++|++||+.+....-.+......|.+..|+|+++.+++|....
T Consensus 192 f---------~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 192 F---------KSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred c---------ccccccccccccCchh-hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 6 4799999999999965 4788899999999999887766666666678899999999999999886554
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-18 Score=175.75 Aligned_cols=276 Identities=15% Similarity=0.205 Sum_probs=187.4
Q ss_pred eEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc-----EEEEEecCCceEEEEEccCCCCEEEEEECCCcEE
Q 002407 560 ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT-----CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVR 633 (927)
Q Consensus 560 i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~-----~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~ 633 (927)
+..|++|.+.|++++|+.+ .+|+|++.|++|+||+++... +++.--.-+..+.+.|.|....+++++-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4467899999999999999 789999999999999998532 2222223346788999994455566666667799
Q ss_pred EEeCCCCc---E----EEec------cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCC
Q 002407 634 IWSIPERQ---V----VDWN------DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQ 700 (927)
Q Consensus 634 IWDl~t~~---~----v~~~------~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~ 700 (927)
+|.+...+ . +.+- .|.-.+..+-.-..+++|++++.|..|.||++. |+.+..+. ...
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id---------tnq 228 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID---------TNQ 228 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec---------ccc
Confidence 99874321 1 1111 122356667777788999999999999999999 66665542 344
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCcEEEEE--------CCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 701 RKITGFQFAPGSSSEVLVTSADSRIRVVD--------GIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 701 ~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD--------~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
..-+..+.+|+|. +|++++.--.|+||. ..+....+....|...|..++|+++...+++.+.||.++|||+
T Consensus 229 ~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 229 SSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 4566778999997 889999999999998 2344556666677888999999999999999999999999998
Q ss_pred CCCCC----cccccccc-------eeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCccc
Q 002407 773 EAESR----PSRSKSIT-------VTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCR 841 (927)
Q Consensus 773 ~s~~~----~~~~~~~~-------~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~ 841 (927)
+-..+ |..++... ....-....+++..+|++......++...+ +...+..+-.+. -
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~----------g~~~~~~e~~h~---~ 374 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED----------GKDYPELEDIHS---T 374 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc----------CccchhHHHhhc---C
Confidence 75322 22221110 001112233444444554444433333333 332322221111 3
Q ss_pred CcceeeecCCCCeEEEec
Q 002407 842 SATGYTNSPLNGTISSAT 859 (927)
Q Consensus 842 ~~~~~~fSPdg~~Lasas 859 (927)
.++.++|+|+|+++++.+
T Consensus 375 ~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 375 TISSISYSSDGKYIATCG 392 (420)
T ss_pred ceeeEEecCCCcEEeeec
Confidence 345567999999999976
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-18 Score=175.41 Aligned_cols=251 Identities=20% Similarity=0.250 Sum_probs=194.0
Q ss_pred ccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCc----------EEEEE------ecCCceEEEEEccCCCCEEEE
Q 002407 564 QGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT----------CLKIF------SHSDYVTCIQFNPVDDRYFIS 625 (927)
Q Consensus 564 ~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~----------~~~~~------~h~~~V~~v~fsp~dg~~L~s 625 (927)
..|.+.|+.|...+. .++++|+.||.|.+||++.-. .+..+ .|.-.|..+.|-|.|..+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 458899999999886 679999999999999997532 11111 277789999999999999999
Q ss_pred EECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCC---CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCC
Q 002407 626 GSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPD---GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (927)
Q Consensus 626 gs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spd---g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (927)
++.|.++++||..+.+....+..++.|.+-+++|- ..++++|..+-.|++.|+..|...+.+ .+|...
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L---------sGHr~~ 190 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL---------SGHRDG 190 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee---------ccccCc
Confidence 99999999999999999999999999999999983 457888888999999999999988876 499999
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEEEEECCcc---eEEEE------------eecCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 703 ITGFQFAPGSSSEVLVTSADSRIRVVDGIDL---VHKFK------------GFRNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 703 Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~---~~~~~------------~~~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
|.++.|+|....+|++|+.||.|++||.+.. ...+. ...+.+.+..++|+.++.++++++.|..+
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI 270 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce
Confidence 9999999999989999999999999995432 22222 22356678899999999999999999999
Q ss_pred EEEECCCCCCcccccc---cceee---eeeeecCCCeEEEEecCCceeEEee-cCCceeeccc
Q 002407 768 YVWKYEAESRPSRSKS---ITVTH---SYEHFHCQDVSVAIPWPGVGDTWGL-QDTYLDEFST 823 (927)
Q Consensus 768 ~IWdl~s~~~~~~~~~---~~~~~---~~~~~~~~~v~vavs~~g~~~i~~~-~d~~i~~~~~ 823 (927)
++|+..++....+.-+ ..... ....--+.++.+.++.++...+.+. .+..+..|+.
T Consensus 271 r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~ 333 (397)
T KOG4283|consen 271 RVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLST 333 (397)
T ss_pred EEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeec
Confidence 9999998764322211 10000 0111224466667777766666553 3444555553
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-18 Score=192.13 Aligned_cols=285 Identities=15% Similarity=0.195 Sum_probs=203.9
Q ss_pred ecCCCCeEEEccCceEEEEeccCccccc-ceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceee
Q 002407 417 TDDSQDVSFHGQERVRVRQYGKSCKDLT-ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495 (927)
Q Consensus 417 ~~d~~~~~~~g~~~~~V~i~~~~s~~l~-~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~ 495 (927)
......+++.+.++|.|.+|+.....+. .-...+...+|.+.|..+.|-|....|++++.|.++++||+.+......
T Consensus 60 ~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~-- 137 (720)
T KOG0321|consen 60 APNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG-- 137 (720)
T ss_pred CCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc--
Confidence 3444567899999999999998877665 1222355679999999999999667999999999999999987653221
Q ss_pred cccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEe
Q 002407 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW 575 (927)
Q Consensus 496 ~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~ 575 (927)
..+.||...|.+++|
T Consensus 138 -----------------------------------------------------------------~~~~GH~~SvkS~cf 152 (720)
T KOG0321|consen 138 -----------------------------------------------------------------RLNLGHTGSVKSECF 152 (720)
T ss_pred -----------------------------------------------------------------eeecccccccchhhh
Confidence 135689999999999
Q ss_pred cCC--cEEEEEeCCCcEEEEeCCCCc--------------------EEEEE--------ecCC----ceEEEEEccCCCC
Q 002407 576 SKS--QHLLSSSMDKTVRLWHLSSKT--------------------CLKIF--------SHSD----YVTCIQFNPVDDR 621 (927)
Q Consensus 576 spd--~~L~Sgs~DgtV~lWDl~t~~--------------------~~~~~--------~h~~----~V~~v~fsp~dg~ 621 (927)
.+. ..|++|+.||.|.|||++... ..+.. .+.. .|+.+.| . |..
T Consensus 153 ~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-k-De~ 230 (720)
T KOG0321|consen 153 MPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-K-DES 230 (720)
T ss_pred ccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-e-ccc
Confidence 997 679999999999999987432 00000 0222 3455555 4 888
Q ss_pred EEEEEEC-CCcEEEEeCCCCcEEE---------eccC---CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecc
Q 002407 622 YFISGSL-DAKVRIWSIPERQVVD---------WNDL---HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 622 ~L~sgs~-Dg~I~IWDl~t~~~v~---------~~~~---~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~ 688 (927)
.|++++. |+.|+|||++...... +..+ ...+.+++....|.+|++.+.|+.|++|++..........
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~ 310 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAE 310 (720)
T ss_pred eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhh
Confidence 9999888 9999999998754321 1112 2367888888899999999999999999998755433322
Q ss_pred cccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEE-EeecCCcceEEEEEecCC-CEEEEEECCCc
Q 002407 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF-KGFRNTNSQISASLTANG-RYVVSASEDSY 766 (927)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~-~~~~~~~~v~sv~fspdg-~~Lasgs~Dg~ 766 (927)
+... ......| .-..+|++. .|++|+.|...++|.+....... ....|...|++++|.|.. .-++++++|..
T Consensus 311 ~sg~----~~~sf~v-ks~lSpd~~-~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~ 384 (720)
T KOG0321|consen 311 FSGK----LNSSFYV-KSELSPDDC-SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFR 384 (720)
T ss_pred ccCc----ccceeee-eeecCCCCc-eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcc
Confidence 1100 0111112 224678877 89999999999999965443222 222356778899998743 34777799999
Q ss_pred EEEEECCCCC
Q 002407 767 VYVWKYEAES 776 (927)
Q Consensus 767 I~IWdl~s~~ 776 (927)
++||++.++-
T Consensus 385 ~kiW~l~~~l 394 (720)
T KOG0321|consen 385 VKIWRLSNGL 394 (720)
T ss_pred eEEEeccCch
Confidence 9999997653
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-18 Score=173.39 Aligned_cols=231 Identities=17% Similarity=0.278 Sum_probs=177.2
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp--dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
.+++.+.++.|++|....... .....+|.||.++|+.++|.. -|.+||+++.||.|.||.-.++.-
T Consensus 25 rlATcsSD~tVkIf~v~~n~~--s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w---------- 92 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNNGQ--SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW---------- 92 (299)
T ss_pred eeeeecCCccEEEEEEcCCCC--ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch----------
Confidence 345555666788887765543 345578999999999999976 899999999999999998765521
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-- 578 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-- 578 (927)
.....+..|...|++++|.|.
T Consensus 93 ---------------------------------------------------------~k~~e~~~h~~SVNsV~waphey 115 (299)
T KOG1332|consen 93 ---------------------------------------------------------TKAYEHAAHSASVNSVAWAPHEY 115 (299)
T ss_pred ---------------------------------------------------------hhhhhhhhhcccceeeccccccc
Confidence 112234569999999999997
Q ss_pred c-EEEEEeCCCcEEEEeCCCC-c-EE-EE-EecCCceEEEEEccCC--C-----------CEEEEEECCCcEEEEeCCCC
Q 002407 579 Q-HLLSSSMDKTVRLWHLSSK-T-CL-KI-FSHSDYVTCIQFNPVD--D-----------RYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 579 ~-~L~Sgs~DgtV~lWDl~t~-~-~~-~~-~~h~~~V~~v~fsp~d--g-----------~~L~sgs~Dg~I~IWDl~t~ 640 (927)
+ .|++++.||.|.|.+++.. . .. ++ +.|.-.|+++.|.|.. + +.|++|+.|..|+||+...+
T Consensus 116 gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 116 GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence 3 4889999999999998764 2 22 22 2399999999999831 2 56999999999999999886
Q ss_pred cEE---EeccCCCcEEEEEECCCC----CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 641 QVV---DWNDLHEMVTAACYTPDG----QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 641 ~~v---~~~~~~~~V~sla~spdg----~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
+-+ .+..|.+.|..++|.|.- .+|++++.||+|.||-........+..+ .......+..+.|+..|.
T Consensus 196 ~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tl------l~~f~~~~w~vSWS~sGn 269 (299)
T KOG1332|consen 196 SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTL------LEEFPDVVWRVSWSLSGN 269 (299)
T ss_pred chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccc------cccCCcceEEEEEecccc
Confidence 432 256778899999999954 5799999999999998763222111111 124556799999999887
Q ss_pred cEEEEEECCCcEEEEE
Q 002407 714 SEVLVTSADSRIRVVD 729 (927)
Q Consensus 714 ~~Llsgs~Dg~I~VwD 729 (927)
+|++++.|+.|.+|.
T Consensus 270 -~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 270 -ILAVSGGDNKVTLWK 284 (299)
T ss_pred -EEEEecCCcEEEEEE
Confidence 899999999999997
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8e-18 Score=173.23 Aligned_cols=290 Identities=17% Similarity=0.264 Sum_probs=205.4
Q ss_pred ecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcc--c--------ceeecccccCccccEEEEccCCC-CCeecc
Q 002407 453 QAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESER--K--------GELLEKQEDGHLNMLLLANGSPE-PTSLSP 520 (927)
Q Consensus 453 ~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~--~--------~~l~~~~~~~~~~~v~~v~~spd-~~~la~ 520 (927)
..|.+.|+++.+.+ .|+|+++|+.||.|.|||+++... . ..+......+|...|..+.|.|- .-.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46999999999988 799999999999999999986541 1 11112334567777888888874 334444
Q ss_pred cccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC----cEEEEEeCCCcEEEEeCC
Q 002407 521 KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS----QHLLSSSMDKTVRLWHLS 596 (927)
Q Consensus 521 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd----~~L~Sgs~DgtV~lWDl~ 596 (927)
+..+..+ ++|+.+.-....--...+.|..-+|+|- -++++|..|-.|++-|+.
T Consensus 120 sSFDhtl-----------------------KVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 120 SSFDHTL-----------------------KVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ccccceE-----------------------EEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 5555555 4454443332222235677888888884 457788888999999999
Q ss_pred CCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC--cEE-------------E-eccCCCcEEEEEECC
Q 002407 597 SKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--QVV-------------D-WNDLHEMVTAACYTP 659 (927)
Q Consensus 597 t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--~~v-------------~-~~~~~~~V~sla~sp 659 (927)
+|.+-+++. |.+.|.++.|+|...-.|++|+.||.|++||++.- ... + ...|.+.++.++|+.
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 999999997 99999999999966667899999999999999753 111 1 233456899999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEE
Q 002407 660 DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKF 737 (927)
Q Consensus 660 dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~ 737 (927)
++.++++.+.|..+++|+...|........+....+ +.+ ..+. +. +-+.. .++.--.++.+.++.... .+..+
T Consensus 257 d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~-~~~-~~~~-~~-~~~s~-vfv~~p~~~~lall~~~sgs~ir~l 331 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQ-TTS-FAVH-IQ-SMDSD-VFVLFPNDGSLALLNLLEGSFVRRL 331 (397)
T ss_pred cchhhhhccCccceEEeecccCcccccccccccccc-ccc-ceEE-Ee-ecccc-eEEEEecCCeEEEEEccCceEEEee
Confidence 999999999999999999998875443221111100 011 1111 22 11222 344444557788887543 44444
Q ss_pred EeecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 738 KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 738 ~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
..+ ...+.+..+.|+-+.+.++..|++|+.|-.
T Consensus 332 ~~h--~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 332 STH--LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ecc--cceeeEEeecCchhhhhccccCCccccccc
Confidence 444 667888999999999999999999999987
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-18 Score=190.17 Aligned_cols=255 Identities=16% Similarity=0.260 Sum_probs=182.3
Q ss_pred eEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEE---EecCCceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 560 ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKI---FSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 560 i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~---~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
+..+..|...|.++.|.|. ..|++++.|.++++||+.+.+++.. ++|...|.+++|.|.+...|++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 3455679999999999997 6799999999999999999988765 45999999999999889999999999999999
Q ss_pred eCCCCcE----------------------------EEeccCCCcEEE---EEECCCCCEEEEEEC-CCeEEEEECCCCee
Q 002407 636 SIPERQV----------------------------VDWNDLHEMVTA---ACYTPDGQGALVGSY-KGSCHLYNTSENKL 683 (927)
Q Consensus 636 Dl~t~~~----------------------------v~~~~~~~~V~s---la~spdg~~l~tgs~-Dg~I~IwDl~~~~~ 683 (927)
|++-... ..+..+...|.. +.+..|...||+++. |+.|+|||++....
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 9864321 011122223444 555567888888887 99999999998765
Q ss_pred eeecccccccccccCC---CCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc----ceEEEEeecCCcceEEEEEecCCC
Q 002407 684 QQKSPINLQNKKKRSH---QRKITGFQFAPGSSSEVLVTSADSRIRVVDGID----LVHKFKGFRNTNSQISASLTANGR 756 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h---~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~----~~~~~~~~~~~~~v~sv~fspdg~ 756 (927)
....+- ........+ ...++++.....|. +|++.+.|+.|+.|++.. ....+.++.....-..-..+|++.
T Consensus 253 ~~r~ep-~~~~~~~t~skrs~G~~nL~lDssGt-~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~ 330 (720)
T KOG0321|consen 253 AYRQEP-RGSDKYPTHSKRSVGQVNLILDSSGT-YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC 330 (720)
T ss_pred ccccCC-CcccCccCcccceeeeEEEEecCCCC-eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc
Confidence 544321 111112223 34577888888777 566666699999999643 333444444443344457789999
Q ss_pred EEEEEECCCcEEEEECCCCCCccc-ccccceeeeeeeecCCCe--EEEEecCCceeEEeecCC
Q 002407 757 YVVSASEDSYVYVWKYEAESRPSR-SKSITVTHSYEHFHCQDV--SVAIPWPGVGDTWGLQDT 816 (927)
Q Consensus 757 ~Lasgs~Dg~I~IWdl~s~~~~~~-~~~~~~~~~~~~~~~~~v--~vavs~~g~~~i~~~~d~ 816 (927)
+|++|+.|...+||.+.+.+.+.. +.++.....+..+.+..+ .++.+-+-...+|.+.++
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999999999999999999776543 345555566666554332 233355666788877544
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-18 Score=185.62 Aligned_cols=282 Identities=16% Similarity=0.213 Sum_probs=225.5
Q ss_pred CCceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC
Q 002407 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 409 ~g~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~ 488 (927)
|+...+++.......+|+|.. +-|++|+.....-..-...-...--...|.++.+.|||+.|++||+-.+|.|||+...
T Consensus 419 GEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAap 497 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAP 497 (705)
T ss_pred CcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCC
Confidence 344445555555667787754 5689999865422211111112235678999999999999999999999999999865
Q ss_pred cccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCC-CceEEEccCC
Q 002407 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHL 567 (927)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~ 567 (927)
...... ...........++.+||.++..++..++.| .+|++.. ..++.|+||.
T Consensus 498 Tprika---eltssapaCyALa~spDakvcFsccsdGnI-----------------------~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 498 TPRIKA---ELTSSAPACYALAISPDAKVCFSCCSDGNI-----------------------AVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred Ccchhh---hcCCcchhhhhhhcCCccceeeeeccCCcE-----------------------EEEEcccceeeecccCCC
Confidence 432211 112222445678899999988888888877 5666654 4678899999
Q ss_pred CCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec
Q 002407 568 DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN 646 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~ 646 (927)
+.+.||..+++ ..|.||+-|.+||.||++++..+........|.++.++| ++.+|+.|-..+.+-|......+..+..
T Consensus 552 DGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~kyqlh 630 (705)
T KOG0639|consen 552 DGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPEKYQLH 630 (705)
T ss_pred CCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCC-CccceeeecccCcEEEEecCCccceeec
Confidence 99999999999 569999999999999999999888878889999999999 9999999999999999998888888888
Q ss_pred cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 647 ~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
.|+..|.++.|.+.|+++++.+.|+.+..|.+.-+..+... .....|.++.++.+++ +|++|+.|....
T Consensus 631 lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs----------kE~SsVlsCDIS~ddk-yIVTGSGdkkAT 699 (705)
T KOG0639|consen 631 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----------KESSSVLSCDISFDDK-YIVTGSGDKKAT 699 (705)
T ss_pred ccccEEEEEEecccCceeeecCchhhhhhccCccccceeec----------cccCcceeeeeccCce-EEEecCCCcceE
Confidence 88899999999999999999999999999999888776552 4567899999998876 899999998888
Q ss_pred EEE
Q 002407 727 VVD 729 (927)
Q Consensus 727 VwD 729 (927)
||.
T Consensus 700 VYe 702 (705)
T KOG0639|consen 700 VYE 702 (705)
T ss_pred EEE
Confidence 875
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=180.39 Aligned_cols=286 Identities=15% Similarity=0.196 Sum_probs=209.1
Q ss_pred ceeeeeEeecCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccc
Q 002407 445 ALYKCQEIQAHNGSIWSIKFSLDG--RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH 522 (927)
Q Consensus 445 ~l~~~q~L~gH~~~I~~vafSpdG--~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~ 522 (927)
.+...+.++-|.+.|++++|+|.. +++|+|..-|.|-+||+.+.+...
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~------------------------------ 224 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK------------------------------ 224 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc------------------------------
Confidence 344556678899999999999954 588999999999999996322111
Q ss_pred cCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcE
Q 002407 523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTC 600 (927)
Q Consensus 523 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~ 600 (927)
.-+..+..|..+|.+|.|+|. .++++.|+||+|++-|++....
T Consensus 225 -----------------------------------d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~ 269 (498)
T KOG4328|consen 225 -----------------------------------DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNIS 269 (498)
T ss_pred -----------------------------------CceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhh
Confidence 123456789999999999996 7899999999999999998754
Q ss_pred EEEEe---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE--EEeccCCCcEEEEEECCCC-CEEEEEECCCeEE
Q 002407 601 LKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV--VDWNDLHEMVTAACYTPDG-QGALVGSYKGSCH 674 (927)
Q Consensus 601 ~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~--v~~~~~~~~V~sla~spdg-~~l~tgs~Dg~I~ 674 (927)
-..+. ....+..++|+. +...++.+..=|.+.+||+++... ..+.-|...|+.++++|-. .+|++++.|++.+
T Consensus 270 e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~k 348 (498)
T KOG4328|consen 270 EEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAK 348 (498)
T ss_pred HHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCccee
Confidence 44443 344577888888 666677777777999999988654 3355566799999999954 5789999999999
Q ss_pred EEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC----cceE-EEEeecC----Ccc
Q 002407 675 LYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI----DLVH-KFKGFRN----TNS 745 (927)
Q Consensus 675 IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~----~~~~-~~~~~~~----~~~ 745 (927)
|||++.-...... ......|...|.+..|+|.+.. |++++.|..|+|||.. .... ....|.+ ...
T Consensus 349 IWD~R~l~~K~sp-----~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT 422 (498)
T KOG4328|consen 349 IWDLRQLRGKASP-----FLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLT 422 (498)
T ss_pred eeehhhhcCCCCc-----ceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCccccccc
Confidence 9999864433320 1112478999999999999885 9999999999999963 1111 1111211 122
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCCCccccc--ccceeeeeeeecCCCeEEEE
Q 002407 746 QISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSK--SITVTHSYEHFHCQDVSVAI 802 (927)
Q Consensus 746 v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~--~~~~~~~~~~~~~~~v~vav 802 (927)
...+.|.|+..+|++|-.-..|-|+|-+.++...... ..........+|+-+..++.
T Consensus 423 ~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~a 481 (498)
T KOG4328|consen 423 PFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAA 481 (498)
T ss_pred chhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceec
Confidence 3467999999999999999999999998876433321 22233455667776664443
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=191.16 Aligned_cols=200 Identities=18% Similarity=0.325 Sum_probs=160.5
Q ss_pred EEEEEecCC--cEEEEEeCCCcEEEEeCCC---CcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE
Q 002407 570 VLDLSWSKS--QHLLSSSMDKTVRLWHLSS---KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (927)
Q Consensus 570 V~~l~~spd--~~L~Sgs~DgtV~lWDl~t---~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v 643 (927)
+.++.|..- ++|+|++..|.|.+||+.. .+.+..|. |+..|+++.|++...++|++|+.||.|++||++..+-.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 456778742 8899999999999999987 45555665 99999999999989999999999999999999987766
Q ss_pred Ee-ccCCCcEEEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 644 DW-NDLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 644 ~~-~~~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
.. ....+.|..|.|+| .+.+|+++...|.+.+||++....... ++.+|.++|.|+.|+|+. .+|++|+.
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~--------k~~AH~GpV~c~nwhPnr-~~lATGGR 240 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK--------KLTAHNGPVLCLNWHPNR-EWLATGGR 240 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH--------HhhcccCceEEEeecCCC-ceeeecCC
Confidence 54 34457899999999 577899999999999999987553322 236999999999999955 49999999
Q ss_pred CCcEEEEECCc-ceEEEEeecCCcceEEEEEecCCCE-EEEEE--CCCcEEEEECCCCCCc
Q 002407 722 DSRIRVVDGID-LVHKFKGFRNTNSQISASLTANGRY-VVSAS--EDSYVYVWKYEAESRP 778 (927)
Q Consensus 722 Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~-Lasgs--~Dg~I~IWdl~s~~~~ 778 (927)
|++|+|||... ............++..+.|-|...+ |++++ .|-.|+|||++....|
T Consensus 241 DK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 241 DKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred CccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 99999999652 2222222334577889999998765 66655 4788999999876554
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.2e-19 Score=199.05 Aligned_cols=214 Identities=20% Similarity=0.386 Sum_probs=184.2
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
.++.+|..+.++-+|... +......|.+|..+|.||.|+++..+|++|+.+|+|++||+++.+
T Consensus 41 r~~~~Gg~~~k~~L~~i~-----kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk------------ 103 (825)
T KOG0267|consen 41 RSLVTGGEDEKVNLWAIG-----KPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK------------ 103 (825)
T ss_pred eeeccCCCceeecccccc-----CCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh------------
Confidence 456788888889888743 223334588999999999999999999999999999999997543
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~ 580 (927)
.+++|.||...+..+.|+|- .+
T Consensus 104 ---------------------------------------------------------~vrtLtgh~~~~~sv~f~P~~~~ 126 (825)
T KOG0267|consen 104 ---------------------------------------------------------IVRTLTGHLLNITSVDFHPYGEF 126 (825)
T ss_pred ---------------------------------------------------------hhhhhhccccCcceeeeccceEE
Confidence 34466789999999999998 67
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-CCCcEEEEEEC
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEMVTAACYT 658 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-~~~~V~sla~s 658 (927)
.+.|+.|..+++||++..-|.+.+. |...|.++.|+| +|++++.++.|..++|||+..|++...+. |...+..+.|+
T Consensus 127 ~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~h 205 (825)
T KOG0267|consen 127 FASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFH 205 (825)
T ss_pred eccccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccC
Confidence 8899999999999999999999998 999999999999 99999999999999999999999987665 77899999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 659 pdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
|..-.++.|+.|+++++||+++...+... ......|.+.+|.|++. .+++|.
T Consensus 206 p~e~Lla~Gs~d~tv~f~dletfe~I~s~---------~~~~~~v~~~~fn~~~~-~~~~G~ 257 (825)
T KOG0267|consen 206 PLEVLLAPGSSDRTVRFWDLETFEVISSG---------KPETDGVRSLAFNPDGK-IVLSGE 257 (825)
T ss_pred chhhhhccCCCCceeeeeccceeEEeecc---------CCccCCceeeeecCCce-eeecCc
Confidence 99999999999999999999988777654 24578899999999985 444443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-17 Score=176.11 Aligned_cols=237 Identities=19% Similarity=0.276 Sum_probs=174.8
Q ss_pred CCeEEEccCceEEEEeccCcc-----------cccceeeeeEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCcC
Q 002407 421 QDVSFHGQERVRVRQYGKSCK-----------DLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~-----------~l~~l~~~q~L~gH~~~I~~vafSpd-G~~LaSgs~DgtVrVWdv~~~ 488 (927)
..+.++-+..|+|.+|+.... .......+.++.+|.+.=+.|+|||- ...|+||.--+.|++|...++
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g 244 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG 244 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC
Confidence 344566678889999986321 11223344567899999999999992 225888888889999988764
Q ss_pred cccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCC
Q 002407 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568 (927)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~ 568 (927)
.-.. . ...|.+|+.
T Consensus 245 ~W~v---------------------------------------------------------------d---~~Pf~gH~~ 258 (440)
T KOG0302|consen 245 SWKV---------------------------------------------------------------D---QRPFTGHTK 258 (440)
T ss_pred ceee---------------------------------------------------------------c---Ccccccccc
Confidence 3111 0 113557999
Q ss_pred CEEEEEecCC--cEEEEEeCCCcEEEEeCCCC---cEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC---
Q 002407 569 DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK---TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--- 640 (927)
Q Consensus 569 ~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~---~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--- 640 (927)
.|-+|+|+|. +.|++||.|++|+|||++.+ .++.+-.|...|+.|.|+. ...+|++|+.||+++|||+++-
T Consensus 259 SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~ 337 (440)
T KOG0302|consen 259 SVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSG 337 (440)
T ss_pred chhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCC
Confidence 9999999997 88999999999999999988 5555555999999999998 6669999999999999999874
Q ss_pred cEE-EeccCCCcEEEEEECCC-CCEEEEEECCCeEEEEECCCCeeee-------ecccccccccccCC--CCCeEEEEEc
Q 002407 641 QVV-DWNDLHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQ-------KSPINLQNKKKRSH--QRKITGFQFA 709 (927)
Q Consensus 641 ~~v-~~~~~~~~V~sla~spd-g~~l~tgs~Dg~I~IwDl~~~~~~~-------~~~i~~~~~~~~~h--~~~Vtsl~fs 709 (927)
+.+ .+..|..+|+++.|+|. ...|++++.|..|.|||+....-.. .....++..-...| .+.|..+.|+
T Consensus 338 ~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH 417 (440)
T KOG0302|consen 338 QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWH 417 (440)
T ss_pred CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheec
Confidence 334 45667789999999994 4678888999999999986432200 00001111111223 4568889999
Q ss_pred CCCCcEEEEEECCCc
Q 002407 710 PGSSSEVLVTSADSR 724 (927)
Q Consensus 710 pdg~~~Llsgs~Dg~ 724 (927)
++-+.+|++++.||-
T Consensus 418 ~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 418 RQIPGLLVSTAIDGF 432 (440)
T ss_pred cCCCCeEEEecccce
Confidence 998888999888874
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-16 Score=182.82 Aligned_cols=266 Identities=16% Similarity=0.200 Sum_probs=206.7
Q ss_pred eecCCCCeEEEccCceEEEEeccCcc-cccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCccccee
Q 002407 416 ATDDSQDVSFHGQERVRVRQYGKSCK-DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494 (927)
Q Consensus 416 a~~d~~~~~~~g~~~~~V~i~~~~s~-~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l 494 (927)
+.+....++.+...++.|++|+..+. +.... +.-|...|.+++. ++.+|++|+.+++|.+|.+.+++.-..
T Consensus 20 ~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t-----i~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~i- 91 (933)
T KOG1274|consen 20 CYDPDGEFICTCGSDGDIRKWKTNSDEEEPET-----IDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTI- 91 (933)
T ss_pred EEcCCCCEEEEecCCCceEEeecCCcccCCch-----hhccCceeEEEee--cccceEEeeccceEEEeeCCCCCccce-
Confidence 33444458888888999999987765 33322 2237888888876 455999999999999999876642111
Q ss_pred ecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEE
Q 002407 495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS 574 (927)
Q Consensus 495 ~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~ 574 (927)
+...+-++.+++
T Consensus 92 --------------------------------------------------------------------L~Rftlp~r~~~ 103 (933)
T KOG1274|consen 92 --------------------------------------------------------------------LARFTLPIRDLA 103 (933)
T ss_pred --------------------------------------------------------------------eeeeeccceEEE
Confidence 112345788999
Q ss_pred ecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC----
Q 002407 575 WSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL---- 648 (927)
Q Consensus 575 ~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~---- 648 (927)
|+.+ .+++.|+.|-.|++-++......+.+. |..+|.+|.|+| .+++|++.+.||.|++||+.++.+......
T Consensus 104 v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~ 182 (933)
T KOG1274|consen 104 VSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD 182 (933)
T ss_pred EecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCcc
Confidence 9988 678999999999999999887777766 999999999999 999999999999999999999876543221
Q ss_pred -----CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC
Q 002407 649 -----HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (927)
Q Consensus 649 -----~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg 723 (927)
...+..++|+|+|..+++...|+.|++|+..+......+.. ..+...+..++|+|.|. +|++++.+|
T Consensus 183 n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~-------~~~ss~~~~~~wsPnG~-YiAAs~~~g 254 (933)
T KOG1274|consen 183 NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD-------KLSSSKFSDLQWSPNGK-YIAASTLDG 254 (933)
T ss_pred ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc-------cccccceEEEEEcCCCc-EEeeeccCC
Confidence 24678899999998999999999999999998887766542 23444599999999987 899999999
Q ss_pred cEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEE
Q 002407 724 RIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVW 770 (927)
Q Consensus 724 ~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IW 770 (927)
.|.|||..+. ..|.....|.+++|.|+..-|-.-...|...+|
T Consensus 255 ~I~vWnv~t~----~~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 255 QILVWNVDTH----ERHEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cEEEEecccc----hhccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999997762 225566778999999998876555555554444
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-17 Score=175.92 Aligned_cols=207 Identities=16% Similarity=0.246 Sum_probs=169.7
Q ss_pred ceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCc----EEEEEe-cCCceEEEEEccCCCCEEEEEECCC
Q 002407 559 PICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKT----CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDA 630 (927)
Q Consensus 559 ~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~----~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg 630 (927)
.....+-|...|++++|+|. ..+++|..-|+|-+||+.+.+ -+..+. |..+|.+|.|+|.+...+++.+.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 34456678899999999997 568899999999999996332 233343 9999999999999999999999999
Q ss_pred cEEEEeCCCCcEEEecc---CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE
Q 002407 631 KVRIWSIPERQVVDWND---LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 631 ~I~IWDl~t~~~v~~~~---~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
+|++-|+.......... ....+..+.|+.+...++.+..=|...+||++++...... ..-|...|++++
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~--------~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN--------LRLHKKKITSVA 329 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh--------hhhhhcccceee
Confidence 99999998865433322 3457788889988888999988889999999987654332 146777999999
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCcceE----EEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 708 FAPGSSSEVLVTSADSRIRVVDGIDLVH----KFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 708 fspdg~~~Llsgs~Dg~I~VwD~~~~~~----~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
++|..+.+|++++.|++.+|||.+.+.. .+....|...|.++.|||.+-.|+|.+.|..|+|||..
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 9999999999999999999999765433 34455678889999999998889999999999999985
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.9e-17 Score=172.78 Aligned_cols=252 Identities=21% Similarity=0.314 Sum_probs=188.9
Q ss_pred EeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 451 EIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 451 ~L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
.+.||+++|..++|+| +...|||||+|.+|.||++..+.....+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l----------------------------------- 120 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL----------------------------------- 120 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc-----------------------------------
Confidence 3479999999999999 5668999999999999998765433221
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEecC
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSHS 607 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~ 607 (927)
.+++..|.||...|--++|+|. +.|++++.|.+|.+||+.+++.+.++.|.
T Consensus 121 ---------------------------tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hp 173 (472)
T KOG0303|consen 121 ---------------------------TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHP 173 (472)
T ss_pred ---------------------------ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCC
Confidence 2677889999999999999997 88999999999999999999999999999
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCC-CcEEEEEECCCCCEEEEEE---CCCeEEEEECCCCe
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLH-EMVTAACYTPDGQGALVGS---YKGSCHLYNTSENK 682 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~-~~V~sla~spdg~~l~tgs---~Dg~I~IwDl~~~~ 682 (927)
+.|+++.|+- +|.+|++.+.|.+|+|||.++++++... .|. .....+.|-.+|..+-+|. .+..+-+||..+-.
T Consensus 174 d~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 174 DMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLE 252 (472)
T ss_pred CeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCccccc
Confidence 9999999999 9999999999999999999999998755 333 2445666788888665553 35779999876543
Q ss_pred eeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc---ceEEEEeecCCcceEEEEEecCCCEEE
Q 002407 683 LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID---LVHKFKGFRNTNSQISASLTANGRYVV 759 (927)
Q Consensus 683 ~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~---~~~~~~~~~~~~~v~sv~fspdg~~La 759 (927)
....++ .......|.---|.++..-+.++|-.|+.||.|.... .++-+..+....+...+.|-|.-- +
T Consensus 253 eP~~~~-------elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKRG--l 323 (472)
T KOG0303|consen 253 EPIALQ-------ELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRG--L 323 (472)
T ss_pred CcceeE-------EeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccccc--c
Confidence 221111 0133445555567888776677778999999998533 355555555666677777766432 2
Q ss_pred EEECCCcEEEEECCC
Q 002407 760 SASEDSYVYVWKYEA 774 (927)
Q Consensus 760 sgs~Dg~I~IWdl~s 774 (927)
-.+..-..++|.+.+
T Consensus 324 ~Vs~cEI~rfyKl~~ 338 (472)
T KOG0303|consen 324 DVSKCEIARFYKLHE 338 (472)
T ss_pred cchHHHHHHHHHhhc
Confidence 222333344555443
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-14 Score=157.04 Aligned_cols=367 Identities=23% Similarity=0.338 Sum_probs=241.6
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc-ccceeecccccCccccEEEEcc-CCCCC-eeccccc-CCc
Q 002407 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE-RKGELLEKQEDGHLNMLLLANG-SPEPT-SLSPKHL-DNH 526 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~-~~~~l~~~~~~~~~~~v~~v~~-spd~~-~la~~~~-~~~ 526 (927)
.+..|...|.++.|.+.+..++.++.|+.+.+|+..... ....+..... ..+..+.. .+++. .+..... ++.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~ 135 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD----SSVSKLALSSPDGNSILLASSSLDGT 135 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC----CceeeEEEECCCcceEEeccCCCCcc
Confidence 457899999999999999999999999999999998876 3333321111 22333333 55544 2222222 333
Q ss_pred eeeecccccccccccccCcccccceEeecCC--CceEEEccCCCCEEEEEecCCc-EEEEEeC-CCcEEEEeCCCCcEEE
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSD--KPICSFQGHLDDVLDLSWSKSQ-HLLSSSM-DKTVRLWHLSSKTCLK 602 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~--k~i~~l~gH~~~V~~l~~spd~-~L~Sgs~-DgtV~lWDl~t~~~~~ 602 (927)
+ .+|+... .....+..|...|..++|+|++ .+++++. |+.+++|++..+..+.
T Consensus 136 ~-----------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (466)
T COG2319 136 V-----------------------KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192 (466)
T ss_pred E-----------------------EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE
Confidence 3 4555553 7778899999999999999994 6777775 9999999999988887
Q ss_pred EEe-cCCceEEEEEccCCCC-EEEEEECCCcEEEEeCCCCcEEE--eccCCCcEEEEEECCCCCEEEEEECCCeEEEEEC
Q 002407 603 IFS-HSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQVVD--WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNT 678 (927)
Q Consensus 603 ~~~-h~~~V~~v~fsp~dg~-~L~sgs~Dg~I~IWDl~t~~~v~--~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl 678 (927)
.+. |...|.+++|+| ++. ++++++.|+.|++||...+..+. ...+.... ...|+|++.++++++.++.+++|++
T Consensus 193 ~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~ 270 (466)
T COG2319 193 TLAGHTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDL 270 (466)
T ss_pred eeccCCCceEEEEEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeee
Confidence 777 899999999998 776 55555999999999998777776 33344443 3389999999999999999999999
Q ss_pred CCCee-eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEee--cCCcceEEEEEecCC
Q 002407 679 SENKL-QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGF--RNTNSQISASLTANG 755 (927)
Q Consensus 679 ~~~~~-~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~--~~~~~v~sv~fspdg 755 (927)
..... .... ..|...|.++.|.|++. .+++++.|+.+.+||........... .+...+..+.|.+++
T Consensus 271 ~~~~~~~~~~---------~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
T COG2319 271 RSSSSLLRTL---------SGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDG 340 (466)
T ss_pred cCCCcEEEEE---------ecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCC
Confidence 87665 2221 26688999999999766 56668888889999865443322222 344467888884343
Q ss_pred CEEEEE-ECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEE-EecCCceeEEeecCCceeeccccCCCCCccee
Q 002407 756 RYVVSA-SEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVA-IPWPGVGDTWGLQDTYLDEFSTANHPPTPVEE 833 (927)
Q Consensus 756 ~~Lasg-s~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~va-vs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~ 833 (927)
..++.+ ..|+.+++|++.............. .....+........ ..-++...+|...............
T Consensus 341 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 412 (466)
T COG2319 341 SLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT------- 412 (466)
T ss_pred CEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECCCCCEEEEecCCCceEEEecccCeeeeeccCCC-------
Confidence 556555 6889999999988661111111110 11112222111111 2233444455433332211111000
Q ss_pred ccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchh
Q 002407 834 ISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEK 875 (927)
Q Consensus 834 l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~ 875 (927)
.......+++++..+++.+ .+..+..|....
T Consensus 413 -------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 443 (466)
T COG2319 413 -------SRVTSLDFSPDGKSLASGS----SDNTIRLWDLKT 443 (466)
T ss_pred -------CcEEEEEECCCCcEEEEec----CCCcEEEEeccC
Confidence 1223345888998888744 566777887654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.8e-17 Score=175.13 Aligned_cols=270 Identities=14% Similarity=0.203 Sum_probs=196.5
Q ss_pred CcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecc-cccCCceeeecccccccccccccCcccccceEeecC
Q 002407 478 CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSP-KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS 556 (927)
Q Consensus 478 gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s 556 (927)
..++|||+...+...++... .....++.+.|.....+++. ...+..+..+.+......
T Consensus 12 d~~kl~D~s~~~~~~~~~~~---t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~------------------ 70 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQ---TAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPE------------------ 70 (673)
T ss_pred CceEEeecccccCccccccC---CCCCcceeeeccccceEEEeecCCceeEEEecccCCCCc------------------
Confidence 36999999988776665422 12233778888877653333 233333333222211000
Q ss_pred CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 557 ~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
-..+..+.+. .-.|++.... -++++|+..+.|+|||++...+.+.+. |...|+++.++- .+.||++++..|.|.|
T Consensus 71 Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiii 147 (673)
T KOG4378|consen 71 VPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIII 147 (673)
T ss_pred cceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEE
Confidence 0111122222 2334433333 689999999999999999777777666 999999999998 8899999999999999
Q ss_pred EeCCCCcEEEeccCC--CcEEEEEECCCCCE-EEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 635 WSIPERQVVDWNDLH--EMVTAACYTPDGQG-ALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 635 WDl~t~~~v~~~~~~--~~V~sla~spdg~~-l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
..+.++.....+.+. ..|.-+.|+|..++ |.+++.+|.|.+||+........+. ..|..+...|+|+|.
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~--------~~HsAP~~gicfsps 219 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS--------EAHSAPCRGICFSPS 219 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh--------hhccCCcCcceecCC
Confidence 999998877666655 45678999997765 5668899999999998876665543 589999999999999
Q ss_pred CCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccc
Q 002407 712 SSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~ 780 (927)
+..+|++.+.|..|.+||.+..... .......+...++|.++|.+|+.|...|.|+.||++..+.|..
T Consensus 220 ne~l~vsVG~Dkki~~yD~~s~~s~-~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~ 287 (673)
T KOG4378|consen 220 NEALLVSVGYDKKINIYDIRSQAST-DRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA 287 (673)
T ss_pred ccceEEEecccceEEEeeccccccc-ceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCce
Confidence 9988999999999999996532221 1222356788999999999999999999999999998766643
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=169.73 Aligned_cols=264 Identities=19% Similarity=0.255 Sum_probs=188.4
Q ss_pred ceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccC
Q 002407 445 ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 445 ~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
+-++.+.+.+|.+.|.+|.|+.++++||+||.|..++||.+...-...
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k-------------------------------- 92 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK-------------------------------- 92 (609)
T ss_pred cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc--------------------------------
Confidence 345557788999999999999999999999999999999985421000
Q ss_pred CceeeecccccccccccccCcccccceEeecCCCceEEEc-cCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEE
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK 602 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~-gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~ 602 (927)
..||+.... .|...|.||+|.-. .+|++|..+++|.+.|+++.+.+.
T Consensus 93 -------------------------------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~ 141 (609)
T KOG4227|consen 93 -------------------------------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIY 141 (609)
T ss_pred -------------------------------CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeee
Confidence 113333332 36689999999876 779999999999999999999999
Q ss_pred EEecCC---ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc----EEEeccCCCcEEEEEECCCC-CEEEEEECCCeEE
Q 002407 603 IFSHSD---YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ----VVDWNDLHEMVTAACYTPDG-QGALVGSYKGSCH 674 (927)
Q Consensus 603 ~~~h~~---~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~----~v~~~~~~~~V~sla~spdg-~~l~tgs~Dg~I~ 674 (927)
++.|.. .|+.+..+| ..+.|++.+.++.|.+||++..+ ++...........+.|+|.. .+|++.+..+-+-
T Consensus 142 V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~ 220 (609)
T KOG4227|consen 142 VANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPN 220 (609)
T ss_pred eecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCC
Confidence 998766 899999999 68899999999999999998754 44445556678889999965 5677888889999
Q ss_pred EEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ceEEEEe------ecCCcceE
Q 002407 675 LYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-LVHKFKG------FRNTNSQI 747 (927)
Q Consensus 675 IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~~------~~~~~~v~ 747 (927)
+||++....... +... .+........-.++.|+|.|. .+++--....-.+||... ....++. .-+...+.
T Consensus 221 ~~D~R~~~~~~~-~~~~-~~~L~~~~~~~M~~~~~~~G~-Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~K 297 (609)
T KOG4227|consen 221 VFDRRMQARPVY-QRSM-FKGLPQENTEWMGSLWSPSGN-QFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIK 297 (609)
T ss_pred ceeeccccchHH-hhhc-cccCcccchhhhheeeCCCCC-eehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeee
Confidence 999986442211 1000 000111122336778999987 455544444445566332 1222222 11233455
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 748 SASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 748 sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
+++|..|- .+++|+.+-.|+||.+....
T Consensus 298 S~~F~~D~-~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 298 SMTFIDDY-TVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred eeeeecce-eeeccCcccceEEEecCCCc
Confidence 77886654 49999999999999996543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.1e-17 Score=169.92 Aligned_cols=279 Identities=18% Similarity=0.299 Sum_probs=198.9
Q ss_pred EeecCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCC----CCeeccc
Q 002407 451 EIQAHNGSIWSIKFSL-----DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE----PTSLSPK 521 (927)
Q Consensus 451 ~L~gH~~~I~~vafSp-----dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd----~~~la~~ 521 (927)
....|+.+|..++|.+ +-..+||+|. ..|.||+......+..++......+....+.++|..+ ..+++.+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3468999999999985 2346777774 4789998876654454443334455666667777654 3456666
Q ss_pred ccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCc
Q 002407 522 HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT 599 (927)
Q Consensus 522 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~ 599 (927)
+.-+.|.. +.-.+++....+.+|...|+.|.++|+ ++|+++|.|.+||+|++++..
T Consensus 112 G~~GvIrV----------------------id~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~ 169 (385)
T KOG1034|consen 112 GYLGVIRV----------------------IDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV 169 (385)
T ss_pred cceeEEEE----------------------EecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe
Confidence 55555522 222355677788999999999999998 699999999999999999999
Q ss_pred EEEEEe----cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEE
Q 002407 600 CLKIFS----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675 (927)
Q Consensus 600 ~~~~~~----h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~I 675 (927)
|+.+|. |.+.|.++.|++ ++.+|++++.|.+|++|++...+....+.. +..|+|++...-.- .-.+.+
T Consensus 170 Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~-----s~~~~~~~t~~pfp--t~~~~f 241 (385)
T KOG1034|consen 170 CVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLEL-----SITYSPNKTTRPFP--TPKTHF 241 (385)
T ss_pred EEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhh-----hcccCCCCccCcCC--cccccc
Confidence 999996 999999999999 999999999999999999987654332221 24566665431100 112233
Q ss_pred EECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceE----------------EEEe
Q 002407 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH----------------KFKG 739 (927)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~----------------~~~~ 739 (927)
.+..+ ..-|...|-|+.|.-+ ++++=+-++.|..|...++.. .+..
T Consensus 242 p~fst---------------~diHrnyVDCvrw~gd---~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~ 303 (385)
T KOG1034|consen 242 PDFST---------------TDIHRNYVDCVRWFGD---FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY 303 (385)
T ss_pred ccccc---------------cccccchHHHHHHHhh---heeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc
Confidence 33221 1368888999998863 788888899999998533221 2222
Q ss_pred ecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 740 FRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 740 ~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
......-...+|.+-+++||.|...|.|++||++..+++
T Consensus 304 ~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 304 PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence 222223345677788999999999999999999987765
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.1e-16 Score=171.29 Aligned_cols=127 Identities=22% Similarity=0.316 Sum_probs=104.7
Q ss_pred cEEEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 651 MVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 651 ~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
.|+.+.|.| |...|++++.||.|+||.+..+.+..... .+......|...|+++.|+|--..+|++++.|.+|++||
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~--tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM--TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC--CcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 477888888 67789999999999999998765443221 122334689999999999997767899999999999999
Q ss_pred CCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 730 GIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 730 ~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
+...........|...|..++|+|+|+.+|+.+.||+|++|+-+..+.+.
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV 756 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc
Confidence 87766666666678889999999999999999999999999998876554
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=173.48 Aligned_cols=234 Identities=17% Similarity=0.225 Sum_probs=183.0
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeE------------------eecCCCCEEEEEEcCCC-CEEEEEeCCCcEE
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQE------------------IQAHNGSIWSIKFSLDG-RYLASAGEDCVIH 481 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~------------------L~gH~~~I~~vafSpdG-~~LaSgs~DgtVr 481 (927)
..+++.|..+..|.+|++.-.+ .++++-. -.+|+..|..|+|...- ..|||||.|.+|+
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d--~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVD--AVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred cceEEEeccCceeEEecccccc--ccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 3578889999999999875432 1122222 23799999999998754 4899999999999
Q ss_pred EEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceE
Q 002407 482 VWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC 561 (927)
Q Consensus 482 VWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~ 561 (927)
+||+.++++. .
T Consensus 270 lWD~~~g~p~---------------------------------------------------------------------~ 280 (463)
T KOG0270|consen 270 LWDVDTGKPK---------------------------------------------------------------------S 280 (463)
T ss_pred EEEcCCCCcc---------------------------------------------------------------------e
Confidence 9999877533 3
Q ss_pred EEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCC-cEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCC
Q 002407 562 SFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK-TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (927)
Q Consensus 562 ~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~-~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~ 638 (927)
++..|.+.|.++.|+|. ..|++|+.|++|.|.|.+.. ..-..+...+.|-.++|.|.....++++..||+|+-+|++
T Consensus 281 s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 281 SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR 360 (463)
T ss_pred ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence 44568999999999997 78999999999999999853 3334455788999999999888899999999999999998
Q ss_pred CC-cEE-EeccCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 639 ER-QVV-DWNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 639 t~-~~v-~~~~~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
.. +++ ....|.+.|.++++++.- .++++++.++.+++|++..........- .-.-+...|+++.|+-...
T Consensus 361 ~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~-------~~~~~rl~c~~~~~~~a~~ 433 (463)
T KOG0270|consen 361 NPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH-------SFKLGRLHCFALDPDVAFT 433 (463)
T ss_pred CCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc-------cccccceeecccCCCcceE
Confidence 85 554 456777899999999854 4688899999999999876544322111 1122347788999998888
Q ss_pred EEEEECCCcEEEEECCc
Q 002407 716 VLVTSADSRIRVVDGID 732 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~ 732 (927)
+++|+..+.++|||..+
T Consensus 434 la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 434 LAFGGEKAVLRVWDIFT 450 (463)
T ss_pred EEecCccceEEEeeccc
Confidence 99999999999999644
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-16 Score=162.33 Aligned_cols=276 Identities=14% Similarity=0.215 Sum_probs=195.7
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
..+++.|..+|+|-+|+..+..+. +.|.+|..+|++++||+||+.|+|++.|..|.+||+..+..+.++.
T Consensus 35 G~~lAvGc~nG~vvI~D~~T~~ia-----r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir----- 104 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFDTFRIA-----RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR----- 104 (405)
T ss_pred cceeeeeccCCcEEEEEccccchh-----hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-----
Confidence 356889999999999997766544 4568999999999999999999999999999999998877555431
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-- 578 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-- 578 (927)
...+|+...|+|.
T Consensus 105 -----------------------------------------------------------------f~spv~~~q~hp~k~ 119 (405)
T KOG1273|consen 105 -----------------------------------------------------------------FDSPVWGAQWHPRKR 119 (405)
T ss_pred -----------------------------------------------------------------ccCccceeeeccccC
Confidence 3456666777764
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe------cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC--C
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH--E 650 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~--~ 650 (927)
+..++.-.+..-.+-++..+.. ..+. ......+..|.+ .|++|++|...|.+.++|..+.+++..+... .
T Consensus 120 n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~rits~~ 197 (405)
T KOG1273|consen 120 NKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVASFRITSVQ 197 (405)
T ss_pred CeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecchheeeeeeeechhe
Confidence 4455555555455555543211 1111 111223346888 9999999999999999999999998766544 5
Q ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec-cccc-ccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS-PINL-QNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~-~i~~-~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
.|..+-++..|..|++-+.|..|+.|+++.-.....- .+.. +.....-....-.+++|+.+|.++++.+.....++||
T Consensus 198 ~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIW 277 (405)
T KOG1273|consen 198 AIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIW 277 (405)
T ss_pred eeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEE
Confidence 7899999999999999999999999998732111000 0000 0000011223345788999988555555567889999
Q ss_pred E--CCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 729 D--GIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 729 D--~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
. .+.++..+.+.+. .....+.|+|-...|++- ..|.|+||.....
T Consensus 278 E~~~GsLVKILhG~kg-E~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 278 EKSIGSLVKILHGTKG-EELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ecCCcceeeeecCCch-hheeecccccceeeeeec-cCCceEEEEeecc
Confidence 8 4567777766532 456788999988888887 7899999987653
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-15 Score=158.84 Aligned_cols=211 Identities=18% Similarity=0.269 Sum_probs=154.4
Q ss_pred ccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc----EEEEEe-cCCceEEEEEcc-CCCCEEEEEECCCcEEEEe
Q 002407 564 QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT----CLKIFS-HSDYVTCIQFNP-VDDRYFISGSLDAKVRIWS 636 (927)
Q Consensus 564 ~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~----~~~~~~-h~~~V~~v~fsp-~dg~~L~sgs~Dg~I~IWD 636 (927)
.+|.+-|.++.|.+- .++++|+.|++|+|||..... +..... |.+.|..|.|.+ .-|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 478899999999987 679999999999999975432 333333 999999999954 4588999999999999997
Q ss_pred CCCC----------cEEEeccCCCcEEEEEECC--CCCEEEEEECCCeEEEEECCCCeeeeecccccc----cccccCCC
Q 002407 637 IPER----------QVVDWNDLHEMVTAACYTP--DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ----NKKKRSHQ 700 (927)
Q Consensus 637 l~t~----------~~v~~~~~~~~V~sla~sp--dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~----~~~~~~h~ 700 (927)
-... ++..+.+....|+.++|.| -|-.+++++.||.++||+.-....+...++... ......+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 5211 1123445567899999999 567899999999999998765433332222111 11122456
Q ss_pred CCeEEEEEcCCC--CcEEEEEECC-----CcEEEEEC----CcceEEEEeecCCcceEEEEEecC----CCEEEEEECCC
Q 002407 701 RKITGFQFAPGS--SSEVLVTSAD-----SRIRVVDG----IDLVHKFKGFRNTNSQISASLTAN----GRYVVSASEDS 765 (927)
Q Consensus 701 ~~Vtsl~fspdg--~~~Llsgs~D-----g~I~VwD~----~~~~~~~~~~~~~~~v~sv~fspd----g~~Lasgs~Dg 765 (927)
....|+.|+|.. ..+|++|+.+ +.++||.. ++....-....+..+|..++|.|+ -.+||+++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 677899998742 2367777655 57888873 344444455567889999999996 35799999999
Q ss_pred cEEEEECCCC
Q 002407 766 YVYVWKYEAE 775 (927)
Q Consensus 766 ~I~IWdl~s~ 775 (927)
|+||++...
T Consensus 250 -v~I~~v~~~ 258 (361)
T KOG2445|consen 250 -VRIFKVKVA 258 (361)
T ss_pred -EEEEEEeec
Confidence 999999763
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=166.77 Aligned_cols=279 Identities=14% Similarity=0.232 Sum_probs=192.3
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp--dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
..++++...+.|++|++.++.+. +++++|...+..|.|.. ....+.+|+.||+|++||+........+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l-----~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~---- 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL-----EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS---- 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh-----heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee----
Confidence 34677888999999999875543 56689999999999987 45689999999999999997765443321
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCC-CCEEEEEecCC
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL-DDVLDLSWSKS 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~-~~V~~l~~spd 578 (927)
+.+|. .+..+++..-.
T Consensus 112 ---------------------------------------------------------------~~~~~~~~f~~ld~nck 128 (376)
T KOG1188|consen 112 ---------------------------------------------------------------WTQQSGTPFICLDLNCK 128 (376)
T ss_pred ---------------------------------------------------------------ccCCCCCcceEeeccCc
Confidence 12222 33445554433
Q ss_pred -cEEEEEe----CCCcEEEEeCCCCcE-EEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC----cEEEec
Q 002407 579 -QHLLSSS----MDKTVRLWHLSSKTC-LKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER----QVVDWN 646 (927)
Q Consensus 579 -~~L~Sgs----~DgtV~lWDl~t~~~-~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~----~~v~~~ 646 (927)
+.+++|. .+-.|.+||++..+. +..+. |.+.|++|+|+|.+.++|++|+.||.|.|||+... .++..+
T Consensus 129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi 208 (376)
T KOG1188|consen 129 KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI 208 (376)
T ss_pred CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh
Confidence 4445443 255699999998766 55554 99999999999999999999999999999998754 345567
Q ss_pred cCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCCeeeeecccccc---cccccCCCCCeEEEEEcCCCCcEEEEEEC-
Q 002407 647 DLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQ---NKKKRSHQRKITGFQFAPGSSSEVLVTSA- 721 (927)
Q Consensus 647 ~~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~---~~~~~~h~~~Vtsl~fspdg~~~Llsgs~- 721 (927)
.+...|..+.|..++ +.|.+-+......+|+++.+.....+..+.. ..+.......+... .+|.+...+++++.
T Consensus 209 N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~ 287 (376)
T KOG1188|consen 209 NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTD 287 (376)
T ss_pred cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccc
Confidence 777889999999877 5588888999999999998875544332200 00011111122222 23443334444443
Q ss_pred CCcEEEEEC--------CcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 722 DSRIRVVDG--------IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 722 Dg~I~VwD~--------~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
-+...++-. .+....+.+. +..-|.++.|...+.++.||++||.+.+|....
T Consensus 288 ~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 288 SNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred cCceeEEEeeecccccccCccccccCC-cHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 455555431 1223333332 445567788888899999999999999999744
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=174.51 Aligned_cols=249 Identities=16% Similarity=0.218 Sum_probs=188.8
Q ss_pred EEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccc
Q 002407 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN 504 (927)
Q Consensus 425 ~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~ 504 (927)
..-..+..+++|.|.-+ +..+.....+.+. .-.|++......|+++||..+.|+|||+... .+..+ ..+|..
T Consensus 51 as~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-l~hr~----lkdh~s 122 (673)
T KOG4378|consen 51 ASMAGDKVMRIKEKDGK-TPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAK-LIHRF----LKDHQS 122 (673)
T ss_pred eecCCceeEEEecccCC-CCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHH-HHhhh----ccCCcc
Confidence 44456777888876544 2222222223332 3345554445589999999999999999843 33322 467889
Q ss_pred cEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccC-CCCEEEEEecCC--cEE
Q 002407 505 MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH-LDDVLDLSWSKS--QHL 581 (927)
Q Consensus 505 ~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH-~~~V~~l~~spd--~~L 581 (927)
.|.++.+.....+||+...++.+....... ......|... ...|.-+.|++. .+|
T Consensus 123 tvt~v~YN~~DeyiAsvs~gGdiiih~~~t----------------------~~~tt~f~~~sgqsvRll~ys~skr~lL 180 (673)
T KOG4378|consen 123 TVTYVDYNNTDEYIASVSDGGDIIIHGTKT----------------------KQKTTTFTIDSGQSVRLLRYSPSKRFLL 180 (673)
T ss_pred eeEEEEecCCcceeEEeccCCcEEEEeccc----------------------CccccceecCCCCeEEEeecccccceee
Confidence 999999999999999988888774332211 1112223322 345668999997 457
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECC
Q 002407 582 LSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTP 659 (927)
Q Consensus 582 ~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~sp 659 (927)
.+++.+|.|.+||+....++..+. |..+...|+|+|.+..+|++.+.|..|.+||+........+....+...++|.+
T Consensus 181 ~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~ 260 (673)
T KOG4378|consen 181 SIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSE 260 (673)
T ss_pred EeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecC
Confidence 889999999999999888887765 999999999999889999999999999999999988888888888999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 660 DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 660 dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
+|.+|++|...|.|..||++..+..... ...|...|++++|-|.
T Consensus 261 ~G~~L~aG~s~G~~i~YD~R~~k~Pv~v--------~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 261 CGTYLCAGNSKGELIAYDMRSTKAPVAV--------RSAHDASVTRVAFQPS 304 (673)
T ss_pred CceEEEeecCCceEEEEecccCCCCceE--------eeecccceeEEEeeec
Confidence 9999999999999999999876533222 2478888999999885
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.1e-15 Score=170.71 Aligned_cols=322 Identities=15% Similarity=0.194 Sum_probs=212.6
Q ss_pred ccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEecCcCcccceeecccccCcc
Q 002407 427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG---RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (927)
Q Consensus 427 g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG---~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~ 503 (927)
......|.+|...+++... .|.+|..+++.+.+.|.. .|+++++.||.|++||...+..+..+.... +.
T Consensus 33 ~~~~~~V~VyS~~Tg~~i~-----~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~---~v 104 (792)
T KOG1963|consen 33 LCTGNFVKVYSTATGECIT-----SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL---PV 104 (792)
T ss_pred EeeCCEEEEEecchHhhhh-----hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC---ce
Confidence 3455678889877776554 668999999999998854 488899999999999999998777763211 11
Q ss_pred ccEEE-EccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEE
Q 002407 504 NMLLL-ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLL 582 (927)
Q Consensus 504 ~~v~~-v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~ 582 (927)
..... .++......+.....+..+..... ...........+-.........+.+|.. -.+|.+++.+.+.
T Consensus 105 ~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s--------~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~ 175 (792)
T KOG1963|consen 105 HALVYKPAQADISANVYVSVEDYSILTTFS--------KKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFK 175 (792)
T ss_pred eEEEechhHhCccceeEeecccceeeeecc--------cccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEE
Confidence 11111 111111111111111111110000 0000000000011111122222333333 3567777777788
Q ss_pred EEeCCCcEEEEeCCCCcEEEEE------ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-----CcEEEeccCCCc
Q 002407 583 SSSMDKTVRLWHLSSKTCLKIF------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-----RQVVDWNDLHEM 651 (927)
Q Consensus 583 Sgs~DgtV~lWDl~t~~~~~~~------~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-----~~~v~~~~~~~~ 651 (927)
....+..+.+|....+. ..+. .|...++|.+++| ++++++++..||.|.+|.--. ..+..+.-|+..
T Consensus 176 ~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~ 253 (792)
T KOG1963|consen 176 GIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE 253 (792)
T ss_pred EEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccc
Confidence 88888899999998765 2111 2777799999999 999999999999999995322 233445667889
Q ss_pred EEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 002407 652 VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 652 V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~ 731 (927)
|++++|+++|.+|++|+..+.+.+|.+.+++.... ..-..+|..+.++||+. ..+....|.+|.+....
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfL----------PRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFL----------PRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKAS 322 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEeecCCCcccc----------cccCCeeEEEEEcCCCC-eEEEEecCceEEEEecc
Confidence 99999999999999999999999999999883221 35678899999999987 67777889999998853
Q ss_pred cceEE--EEeec---------CCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 732 DLVHK--FKGFR---------NTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 732 ~~~~~--~~~~~---------~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
++..+ ..+.. ...-.+.++++|--+.++-.+..|.|.+||+-+....
T Consensus 323 dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 323 DLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred chhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 32211 11111 1233456888997777888889999999999887654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.1e-16 Score=170.84 Aligned_cols=299 Identities=17% Similarity=0.162 Sum_probs=206.4
Q ss_pred cCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEE
Q 002407 555 LSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVR 633 (927)
Q Consensus 555 ~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~ 633 (927)
+...+-..+.||++.|.+|...|. ..|++|+.||+|+||.+.++.|++++.....|.||+|+|....-+++......+.
T Consensus 388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceE
Confidence 344556678999999999999998 7899999999999999999999999999999999999995444455544444444
Q ss_pred EEeCCCC-----------------------c---------------EEEeccCCCcEEEEEECCCCCEEEEEECC---Ce
Q 002407 634 IWSIPER-----------------------Q---------------VVDWNDLHEMVTAACYTPDGQGALVGSYK---GS 672 (927)
Q Consensus 634 IWDl~t~-----------------------~---------------~v~~~~~~~~V~sla~spdg~~l~tgs~D---g~ 672 (927)
|.+..-| + +...+.+...|..+.|+..|.||++...+ ..
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence 4432111 0 11234556789999999999999997664 46
Q ss_pred EEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEe
Q 002407 673 CHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLT 752 (927)
Q Consensus 673 I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fs 752 (927)
|.|+++.....+..+ ....+.|.++.|+|.... |+++ ....|+|||+......-+.......|..++++
T Consensus 548 VliHQLSK~~sQ~PF---------~kskG~vq~v~FHPs~p~-lfVa-Tq~~vRiYdL~kqelvKkL~tg~kwiS~msih 616 (733)
T KOG0650|consen 548 VLIHQLSKRKSQSPF---------RKSKGLVQRVKFHPSKPY-LFVA-TQRSVRIYDLSKQELVKKLLTGSKWISSMSIH 616 (733)
T ss_pred EEEEecccccccCch---------hhcCCceeEEEecCCCce-EEEE-eccceEEEehhHHHHHHHHhcCCeeeeeeeec
Confidence 999999876655333 345677999999998774 3333 35679999965433322333456678899999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCCCcc-cccccceeeeeeeecCCCeEEE-EecCCceeEEeecCCceeeccccCCCCCc
Q 002407 753 ANGRYVVSASEDSYVYVWKYEAESRPS-RSKSITVTHSYEHFHCQDVSVA-IPWPGVGDTWGLQDTYLDEFSTANHPPTP 830 (927)
Q Consensus 753 pdg~~Lasgs~Dg~I~IWdl~s~~~~~-~~~~~~~~~~~~~~~~~~v~va-vs~~g~~~i~~~~d~~i~~~~~~~~~~~~ 830 (927)
|.|.-|+.++.|+.+..||+.-...+- .++.+........||..=-..+ .+-+|+..++- +.++.--..+....|
T Consensus 617 p~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh---g~VY~Dl~qnpliVP 693 (733)
T KOG0650|consen 617 PNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH---GMVYNDLLQNPLIVP 693 (733)
T ss_pred CCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe---eeeehhhhcCCceEe
Confidence 999999999999999999998876553 2333333334445554422223 33346654432 111111122333455
Q ss_pred ceeccCCCcc--cCcceeeecCCCCeEEEeccccccCcccccc
Q 002407 831 VEEISGNEDC--RSATGYTNSPLNGTISSATNSYFFDRISATW 871 (927)
Q Consensus 831 ~~~l~~~~~~--~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W 871 (927)
+..+.+|... ..+..+.|.|.--+|++++ +|+++++|
T Consensus 694 lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAG----Ad~tirlf 732 (733)
T KOG0650|consen 694 LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAG----ADGTIRLF 732 (733)
T ss_pred eeeccCceeecccceEeecccCCCceEEecC----CCceEEee
Confidence 5556666444 3334457999999999998 88888877
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.4e-16 Score=164.57 Aligned_cols=308 Identities=21% Similarity=0.309 Sum_probs=215.7
Q ss_pred CCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCcCcccc---ee-ecccccCccccEEEEccCCCCCeecccccCCceeee
Q 002407 456 NGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKG---EL-LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (927)
Q Consensus 456 ~~~I~~vafSpdG~-~LaSgs~DgtVrVWdv~~~~~~~---~l-~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~ 530 (927)
..+|..+.|.+... .|||||.|..|+||.+....... .+ .......|...+..+.|+|+|.+++++++++.+..+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45799999999776 99999999999999987655333 22 244567889999999999999999999999998877
Q ss_pred cccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCC
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSD 608 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~ 608 (927)
........ +.-. +.......-.....+.+|...|..++|+|+ .++++++.|.++++||+..|+.+..+. |..
T Consensus 93 k~~~~~~~-----~~d~-e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 93 KQGDVRIF-----DADT-EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred EecCcCCc-----cccc-hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence 66531000 0000 111111222445678899999999999999 779999999999999999999999887 999
Q ss_pred ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc--------------------C----CCcEEEEEECCCCCEE
Q 002407 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND--------------------L----HEMVTAACYTPDGQGA 664 (927)
Q Consensus 609 ~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~--------------------~----~~~V~sla~spdg~~l 664 (927)
.|..++|.| ..+++++-+.|...+.+.+...+++.... | +.-...++|+|+|..+
T Consensus 167 yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll 245 (434)
T KOG1009|consen 167 YVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL 245 (434)
T ss_pred ccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEE
Confidence 999999999 89999999999877777765543322111 0 1234568899999999
Q ss_pred EEEEC----CC-----eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC-------C---------CcEEEEE
Q 002407 665 LVGSY----KG-----SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG-------S---------SSEVLVT 719 (927)
Q Consensus 665 ~tgs~----Dg-----~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd-------g---------~~~Llsg 719 (927)
++... .+ ..++|+-.. +... .............+.|+|- . -.++++-
T Consensus 246 vtPag~~~~g~~~~~n~tYvfsrk~---l~rP-----~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfai 317 (434)
T KOG1009|consen 246 VTPAGLFKVGGGVFRNTSYVFSRKD---LKRP-----AARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAI 317 (434)
T ss_pred EcccceeeeCCceeeceeEeecccc---ccCc-----eeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEE
Confidence 88532 12 223343221 1110 0111234445555555541 0 0134444
Q ss_pred ECCCcEEEEECCcceEEEE-eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 720 SADSRIRVVDGIDLVHKFK-GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 720 s~Dg~I~VwD~~~~~~~~~-~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
.....|+|||+......+. ...|...++.++|++||.+|+..+.||..-+-.++..+.-
T Consensus 318 At~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 318 ATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred eecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 5567899999776433222 1235678999999999999999999999888888776543
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=159.39 Aligned_cols=202 Identities=21% Similarity=0.338 Sum_probs=152.8
Q ss_pred CCEEEEEec-------CC-cEEEEEeCCCcEEEEeCCCCcEEEEEe---cCCc---eEEEEEccCCCCEEEEEECCCcEE
Q 002407 568 DDVLDLSWS-------KS-QHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDY---VTCIQFNPVDDRYFISGSLDAKVR 633 (927)
Q Consensus 568 ~~V~~l~~s-------pd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~---h~~~---V~~v~fsp~dg~~L~sgs~Dg~I~ 633 (927)
..|...+|- |+ .++++.+.+.-|++||.-+|+....+. |.+. ..+++|+| ||.+|++|. ...|+
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy-krcir 182 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIR 182 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc-cceEE
Confidence 346666664 34 688999999999999999999887765 5544 46899999 999988765 57899
Q ss_pred EEeC-CCCcE---EEe-----ccCCCcEEEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCe
Q 002407 634 IWSI-PERQV---VDW-----NDLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 634 IWDl-~t~~~---v~~-----~~~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
+||+ +.|.- ... +...+.|.+++|+| +.+.+++|+.-..+-||.-.....+... .+|.+.|
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll---------ggh~gGv 253 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL---------GGHGGGV 253 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee---------cccCCCe
Confidence 9999 44432 112 22346899999999 5568999999999999988877776654 4899999
Q ss_pred EEEEEcCCCCcEEEEE-ECCCcEEEEECCcce---EEEEeecC-CcceEEEEEecCCCEEEEEECCCcEEEEECCC-CCC
Q 002407 704 TGFQFAPGSSSEVLVT-SADSRIRVVDGIDLV---HKFKGFRN-TNSQISASLTANGRYVVSASEDSYVYVWKYEA-ESR 777 (927)
Q Consensus 704 tsl~fspdg~~~Llsg-s~Dg~I~VwD~~~~~---~~~~~~~~-~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s-~~~ 777 (927)
+.++|.++|. .|++| -.|..|..||.+... -.+..+.. ...-+-+.+.|++++|++|+.||.|++||++. +..
T Consensus 254 ThL~~~edGn-~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 254 THLQWCEDGN-KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred eeEEeccCcC-eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc
Confidence 9999999998 56666 468899999976433 23333333 33444567789999999999999999999998 443
Q ss_pred cccc
Q 002407 778 PSRS 781 (927)
Q Consensus 778 ~~~~ 781 (927)
+...
T Consensus 333 ~sv~ 336 (406)
T KOG2919|consen 333 VSVT 336 (406)
T ss_pred cccc
Confidence 4433
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8e-17 Score=191.57 Aligned_cols=293 Identities=16% Similarity=0.174 Sum_probs=213.7
Q ss_pred EEEEcCCCC-EEEEE----------eCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCe----ecccccCC
Q 002407 461 SIKFSLDGR-YLASA----------GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTS----LSPKHLDN 525 (927)
Q Consensus 461 ~vafSpdG~-~LaSg----------s~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~----la~~~~~~ 525 (927)
.++|+|++. +||+| +.+.++-||.+........+..............+.|.+.+.. |+.+..++
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 478999887 66654 3355677777654433322221112223344556777776554 78888888
Q ss_pred ceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEE
Q 002407 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKI 603 (927)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~ 603 (927)
.+..+.....+ -......+.++..|.+.|..|.|++. +.|++|+.||.|.|||+...+.-..
T Consensus 91 ~I~ly~p~~~~----------------~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~ 154 (1049)
T KOG0307|consen 91 NIVLYDPASII----------------ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFT 154 (1049)
T ss_pred ceEEecchhhc----------------cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCC
Confidence 87655433211 11223456677889999999999997 5899999999999999987554444
Q ss_pred Ee---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCC--CcEEEEEECCCCC-EEEEEECCC---eE
Q 002407 604 FS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLH--EMVTAACYTPDGQ-GALVGSYKG---SC 673 (927)
Q Consensus 604 ~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~--~~V~sla~spdg~-~l~tgs~Dg---~I 673 (927)
+. ....|.+++|+......|++++.+|.+.|||++..+.+- +..+. ..+..++|+|+.. .|++++.|. .|
T Consensus 155 ~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pvi 234 (1049)
T KOG0307|consen 155 PGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVI 234 (1049)
T ss_pred CCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCcee
Confidence 42 567899999998778889999999999999999876553 33332 3588999999764 566666654 49
Q ss_pred EEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEec
Q 002407 674 HLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTA 753 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fsp 753 (927)
.+||++.-..-... ...|...|.++.|++.+..+|++++.|++|.+|+..+............++..+.|.|
T Consensus 235 qlWDlR~assP~k~--------~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~p 306 (1049)
T KOG0307|consen 235 QLWDLRFASSPLKI--------LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCP 306 (1049)
T ss_pred EeecccccCCchhh--------hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecC
Confidence 99998764332221 2489999999999999988999999999999999877655555555677899999999
Q ss_pred CCC-EEEEEECCCcEEEEECCCCCC
Q 002407 754 NGR-YVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 754 dg~-~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
... .|++++-||.|-||.+.+...
T Consensus 307 r~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 307 RNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred CCcchhhhheeccceeeeeeecCCc
Confidence 766 788889999999999988653
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.7e-13 Score=147.63 Aligned_cols=318 Identities=24% Similarity=0.406 Sum_probs=227.6
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCC-CCEEEEEE-cCCCC-EEEEEeC-CCcEEEEecCc-Cccccee
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKF-SLDGR-YLASAGE-DCVIHVWQVVE-SERKGEL 494 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~-~~I~~vaf-SpdG~-~LaSgs~-DgtVrVWdv~~-~~~~~~l 494 (927)
....+..+..++.+.+|+..... .....+.++. ..+..+.+ ++++. +++..+. |+.+++|++.. ......+
T Consensus 76 ~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 151 (466)
T COG2319 76 DGELLLSGSSDGTIKLWDLDNGE----KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL 151 (466)
T ss_pred CCcEEEEecCCCcEEEEEcCCCc----eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEE
Confidence 34445666688899999877664 1223445533 47888888 88888 5555455 99999999987 4333332
Q ss_pred ecccccCccccEEEEccCCCCCeeccccc-CCceeeecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEE
Q 002407 495 LEKQEDGHLNMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLD 572 (927)
Q Consensus 495 ~~~~~~~~~~~v~~v~~spd~~~la~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~ 572 (927)
..+...+..+.+++++..++.+.. ++.+ .+|... .+.+..+.+|...|.+
T Consensus 152 -----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 152 -----EGHSESVTSLAFSPDGKLLASGSSLDGTI-----------------------KLWDLRTGKPLSTLAGHTDPVSS 203 (466)
T ss_pred -----ecCcccEEEEEECCCCCEEEecCCCCCce-----------------------EEEEcCCCceEEeeccCCCceEE
Confidence 456677779999999876666653 5544 344443 4677788889999999
Q ss_pred EEecCCc--EEEEEeCCCcEEEEeCCCCcEEE-EEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE-EE-ec
Q 002407 573 LSWSKSQ--HLLSSSMDKTVRLWHLSSKTCLK-IFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-VD-WN 646 (927)
Q Consensus 573 l~~spd~--~L~Sgs~DgtV~lWDl~t~~~~~-~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~-v~-~~ 646 (927)
++|+|++ .+++++.|+.|++||...+..+. .+. |...+ ...|+| ++.++++++.|+.+++|++..... +. ..
T Consensus 204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 281 (466)
T COG2319 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281 (466)
T ss_pred EEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEe
Confidence 9999885 44555999999999999888777 454 76665 448999 778899999999999999987653 33 33
Q ss_pred cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE-ECCCcE
Q 002407 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT-SADSRI 725 (927)
Q Consensus 647 ~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg-s~Dg~I 725 (927)
.+...+.++.|.|++..+++++.|+.+.+|++.......... ...|...+..+.| +.....++.+ ..|+.+
T Consensus 282 ~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-------LKGHEGPVSSLSF-SPDGSLLVSGGSDDGTI 353 (466)
T ss_pred cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-------ecccCCceEEEEE-CCCCCEEEEeecCCCcE
Confidence 556899999999998888889999889999988877655532 1256667999999 4331245555 688999
Q ss_pred EEEECCcceEEEEeecCCcceEEEEEecCCCEEEE-EECCCcEEEEECCCCCCcccc
Q 002407 726 RVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVS-ASEDSYVYVWKYEAESRPSRS 781 (927)
Q Consensus 726 ~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Las-gs~Dg~I~IWdl~s~~~~~~~ 781 (927)
.+|+..... ..........+..+.+.+ ...++. +..++.+.+|+..........
T Consensus 354 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (466)
T COG2319 354 RLWDLRTGK-PLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNL 408 (466)
T ss_pred EeeecCCCc-eeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeec
Confidence 999966554 222222222277888888 544444 688999999999887654333
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-16 Score=175.42 Aligned_cols=260 Identities=20% Similarity=0.294 Sum_probs=190.1
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeee
Q 002407 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~ 530 (927)
++..|...|+.++|.|-...|++|+.||+|++|++...... .
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s-------------------------------~------- 330 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS-------------------------------A------- 330 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc-------------------------------c-------
Confidence 56789999999999999999999999999999998331100 0
Q ss_pred cccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC----------c
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK----------T 599 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~----------~ 599 (927)
...-+++.+|.+|.++|.|+++.++ ..+++|+.||+|+.|++... .
T Consensus 331 -----------------------~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~v 387 (577)
T KOG0642|consen 331 -----------------------EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSV 387 (577)
T ss_pred -----------------------ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcch
Confidence 0122788899999999999999998 78999999999999966521 1
Q ss_pred EEEE-EecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec--cCCCcEEEEEECCCC-CEEEEEECCCeEEE
Q 002407 600 CLKI-FSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--DLHEMVTAACYTPDG-QGALVGSYKGSCHL 675 (927)
Q Consensus 600 ~~~~-~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~--~~~~~V~sla~spdg-~~l~tgs~Dg~I~I 675 (927)
...+ .+|++.|+.+++++ ....|++++.||++++|+........+. .-+...+++.+.... .+.++...-+.-.+
T Consensus 388 l~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~ 466 (577)
T KOG0642|consen 388 LSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSI 466 (577)
T ss_pred hccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccc
Confidence 1122 24999999999999 8888999999999999998776662222 223455666665433 23333333333344
Q ss_pred EECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCC
Q 002407 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANG 755 (927)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg 755 (927)
+++........+.... .........+.-+.++|..+ +.+++..|+.|+++|.......+....+...++++++.|+|
T Consensus 467 ~~~ev~s~~~~~~s~~--~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng 543 (577)
T KOG0642|consen 467 DDMEVVSDLLIFESSA--SPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNG 543 (577)
T ss_pred hhhhhhhheeeccccC--CCcccccCccceEEecCCCC-eeEecccCCceecccccccccchheeeccceecceeecCCC
Confidence 4444433332222110 01112235577888999886 89999999999999977666666666677889999999999
Q ss_pred CEEEEEECCCcEEEEECCCC
Q 002407 756 RYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 756 ~~Lasgs~Dg~I~IWdl~s~ 775 (927)
-+|++++.|+.|++|.+...
T Consensus 544 ~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 544 PYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ceEEeecCCceeehhhccch
Confidence 99999999999999999753
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-15 Score=165.93 Aligned_cols=272 Identities=16% Similarity=0.254 Sum_probs=210.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccccc
Q 002407 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (927)
Q Consensus 458 ~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~ 537 (927)
.|..++|-|||..|+.+. +..+.|||..++..+.++ .+|...|.+++++.+|..+++++.+..+..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtL-----KgHKDtVycVAys~dGkrFASG~aDK~VI~-------- 79 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPL-----KGHKDTVYCVAYAKDGKRFASGSADKSVII-------- 79 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccccccc-----ccccceEEEEEEccCCceeccCCCceeEEE--------
Confidence 799999999999888775 457999999999988875 789999999999999999999988887633
Q ss_pred ccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEc
Q 002407 538 RKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFN 616 (927)
Q Consensus 538 ~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fs 616 (927)
|...-+-+..+ .|.+.|.||.|.|- ..|++++-. ..-+|....... ........|.+.+|.
T Consensus 80 ---------------W~~klEG~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K~kss~R~~~CsWt 141 (1081)
T KOG1538|consen 80 ---------------WTSKLEGILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV-SKHKSSSRIICCSWT 141 (1081)
T ss_pred ---------------ecccccceeee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH-HhhhhheeEEEeeec
Confidence 33222222222 49999999999997 667777653 466888765433 223355678999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCcEEEecc---CCCcEEEEEECCCC-----CEEEEEECCCeEEEEECCCCeeeeecc
Q 002407 617 PVDDRYFISGSLDAKVRIWSIPERQVVDWND---LHEMVTAACYTPDG-----QGALVGSYKGSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 617 p~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~---~~~~V~sla~spdg-----~~l~tgs~Dg~I~IwDl~~~~~~~~~~ 688 (927)
. ||.+|+.|-.+|+|.|-+-...+.+.... .+.+|.+++|+|.. ..+++.....++.+|.+....+-..
T Consensus 142 n-DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~-- 218 (1081)
T KOG1538|consen 142 N-DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKD-- 218 (1081)
T ss_pred C-CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccc--
Confidence 8 99999999999999998765544444333 45799999999953 4788888899999998875443322
Q ss_pred cccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
+.......|+.+.++|. +++.|+.|+.+.+|.- +.+..-.......+|+.++..|++++++.|+.||+|-
T Consensus 219 --------r~L~FdP~CisYf~NGE-y~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 219 --------RALNFDPCCISYFTNGE-YILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred --------ccCCCCchhheeccCCc-EEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCeee
Confidence 24445677899999988 8999999999999973 3333222233577899999999999999999999999
Q ss_pred EEECCC
Q 002407 769 VWKYEA 774 (927)
Q Consensus 769 IWdl~s 774 (927)
.|++-.
T Consensus 289 CyNl~f 294 (1081)
T KOG1538|consen 289 CYNLIF 294 (1081)
T ss_pred hhhhHH
Confidence 999864
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.1e-16 Score=184.81 Aligned_cols=233 Identities=16% Similarity=0.231 Sum_probs=185.6
Q ss_pred CeEEEccCceEEEEeccCcc-cccceeeeeEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 422 DVSFHGQERVRVRQYGKSCK-DLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~-~l~~l~~~q~L~gH~~~I~~vafSpdG~-~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
.+++.|..+|.|-+|+...- .-.....+.++..|+|.|..+.|++... +||+|+.||.|.|||+.+.+....+.
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---- 156 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---- 156 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC----
Confidence 46788999999999987641 1112223345678999999999999655 99999999999999997644222210
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
-..-.+.|.+|+|...
T Consensus 157 ---------------------------------------------------------------~~~~~~eI~~lsWNrkv 173 (1049)
T KOG0307|consen 157 ---------------------------------------------------------------SQAPPSEIKCLSWNRKV 173 (1049)
T ss_pred ---------------------------------------------------------------CCCCcccceEeccchhh
Confidence 0113567999999986
Q ss_pred -cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC--CceEEEEEccCCCCEEEEEECCCc---EEEEeCCCCc-EEEe-ccCC
Q 002407 579 -QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS--DYVTCIQFNPVDDRYFISGSLDAK---VRIWSIPERQ-VVDW-NDLH 649 (927)
Q Consensus 579 -~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~--~~V~~v~fsp~dg~~L~sgs~Dg~---I~IWDl~t~~-~v~~-~~~~ 649 (927)
..|++++.+|.+.|||++..+.+-.+. +. ..+..|+|+|.+-..|++++.|.. |.+||++.-. .++. ..|.
T Consensus 174 qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~ 253 (1049)
T KOG0307|consen 174 SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQ 253 (1049)
T ss_pred hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccc
Confidence 668999999999999999988777776 22 347899999977777888887654 9999987642 3333 4677
Q ss_pred CcEEEEEECCCC-CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 650 EMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 650 ~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
..|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+. .....+..+.|+|..+.++++++.||.|.||
T Consensus 254 ~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p---------~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 254 RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP---------AQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC---------CCCcceeeeeecCCCcchhhhheeccceeee
Confidence 899999999965 889999999999999999999988764 5678899999999999899999999999999
Q ss_pred EC
Q 002407 729 DG 730 (927)
Q Consensus 729 D~ 730 (927)
..
T Consensus 325 sl 326 (1049)
T KOG0307|consen 325 SL 326 (1049)
T ss_pred ee
Confidence 84
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-15 Score=158.85 Aligned_cols=204 Identities=18% Similarity=0.288 Sum_probs=163.4
Q ss_pred EEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCc-------EEEEE-ecCCceEEEEEccCCCCEEEEEECCCc
Q 002407 562 SFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT-------CLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAK 631 (927)
Q Consensus 562 ~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~-------~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~ 631 (927)
.+.||+++|.+++|+|- ..|++||.|.+|.||++..+. ++..+ .|...|--|+|+|.-.+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 46799999999999984 789999999999999987543 33333 499999999999988999999999999
Q ss_pred EEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCC-CeEEEEEcC
Q 002407 632 VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQR-KITGFQFAP 710 (927)
Q Consensus 632 I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~-~Vtsl~fsp 710 (927)
|.+|++.+++.+-.+.|.+.|.+++|+.||.+|++.+.|..|+|||.++++.+.... .|.+ .-..+.|..
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~---------~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV---------AHEGAKPARAIFLA 226 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc---------cccCCCcceeEEec
Confidence 999999999988878899999999999999999999999999999999999887742 3432 344566777
Q ss_pred CCCcEEEEEE----CCCcEEEEECCcceEEE--EeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCCC
Q 002407 711 GSSSEVLVTS----ADSRIRVVDGIDLVHKF--KGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAES 776 (927)
Q Consensus 711 dg~~~Llsgs----~Dg~I~VwD~~~~~~~~--~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~~ 776 (927)
++. +++++ .+.++-+||..++.... ........|.---|.+|...|..++ .|+.|+-|.+.+..
T Consensus 227 ~g~--i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 227 SGK--IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCc--eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 775 55543 57889999965543332 2222334455556788888876655 69999999998764
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-13 Score=153.80 Aligned_cols=277 Identities=13% Similarity=0.191 Sum_probs=174.7
Q ss_pred EEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCcCcccceeecccccCcc
Q 002407 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKGELLEKQEDGHL 503 (927)
Q Consensus 425 ~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs-~DgtVrVWdv~~~~~~~~l~~~~~~~~~ 503 (927)
++...++.|.+|+..+. ..+...+.+. +.+....|+|+|++++|+.++ .++.|.+|++.....+...
T Consensus 6 ~~~~~~~~I~~~~~~~~--g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~--------- 73 (330)
T PRK11028 6 IASPESQQIHVWNLNHE--GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA--------- 73 (330)
T ss_pred EEcCCCCCEEEEEECCC--CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe---------
Confidence 33456788999988532 1223334444 346677899999999987764 5788999998622111100
Q ss_pred ccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEE
Q 002407 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL 582 (927)
Q Consensus 504 ~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~ 582 (927)
... ...+....++|+|+ ++|+
T Consensus 74 ---------------------------------------------------------~~~-~~~~~p~~i~~~~~g~~l~ 95 (330)
T PRK11028 74 ---------------------------------------------------------AES-PLPGSPTHISTDHQGRFLF 95 (330)
T ss_pred ---------------------------------------------------------eee-cCCCCceEEEECCCCCEEE
Confidence 000 01123457889998 5566
Q ss_pred EEe-CCCcEEEEeCCCC----cEEEEEecCCceEEEEEccCCCCEEEEE-ECCCcEEEEeCCCCcEEE-------eccCC
Q 002407 583 SSS-MDKTVRLWHLSSK----TCLKIFSHSDYVTCIQFNPVDDRYFISG-SLDAKVRIWSIPERQVVD-------WNDLH 649 (927)
Q Consensus 583 Sgs-~DgtV~lWDl~t~----~~~~~~~h~~~V~~v~fsp~dg~~L~sg-s~Dg~I~IWDl~t~~~v~-------~~~~~ 649 (927)
+++ .++.|.+|++.+. +.+..+.+.....+++|+| ++++++++ ..++.|.+||+.+...+. .....
T Consensus 96 v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g 174 (330)
T PRK11028 96 SASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG 174 (330)
T ss_pred EEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC
Confidence 655 4889999999742 2333333445577889999 88877554 456899999997632221 11223
Q ss_pred CcEEEEEECCCCCEEEEEEC-CCeEEEEECCC--CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE-ECCCcE
Q 002407 650 EMVTAACYTPDGQGALVGSY-KGSCHLYNTSE--NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT-SADSRI 725 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~-Dg~I~IwDl~~--~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg-s~Dg~I 725 (927)
..+..+.|+|+|++++++.. ++.|.+|++.. +.......+...... .........+.|+|+++ +++++ ..++.|
T Consensus 175 ~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~i~~~pdg~-~lyv~~~~~~~I 252 (330)
T PRK11028 175 AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD-FSDTRWAADIHITPDGR-HLYACDRTASLI 252 (330)
T ss_pred CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc-CCCCccceeEEECCCCC-EEEEecCCCCeE
Confidence 45678999999999988876 89999999973 332221111110000 01222344688999987 45555 457899
Q ss_pred EEEECCc--ceEEEEee-cCCcceEEEEEecCCCEEEEEEC-CCcEEEEECCC
Q 002407 726 RVVDGID--LVHKFKGF-RNTNSQISASLTANGRYVVSASE-DSYVYVWKYEA 774 (927)
Q Consensus 726 ~VwD~~~--~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~-Dg~I~IWdl~s 774 (927)
.+|+... ....+..+ ........+.|+|+|++|+++.. +++|.||+++.
T Consensus 253 ~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 253 SVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 9998522 11122222 11223457899999999998775 88999999864
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-14 Score=153.70 Aligned_cols=191 Identities=16% Similarity=0.216 Sum_probs=151.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccC-CCCEEEEEECCCcEEEEeCCCCcEE---EeccCC-CcE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPV-DDRYFISGSLDAKVRIWSIPERQVV---DWNDLH-EMV 652 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~-dg~~L~sgs~Dg~I~IWDl~t~~~v---~~~~~~-~~V 652 (927)
..++++...|+|++||..+++.+..|. +...++.+.|... ....+++|+.||+|++||++..... .+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 468899999999999999999999998 8888889999763 3577999999999999999886433 333333 467
Q ss_pred EEEEECCCCCEEEEEEC----CCeEEEEECCCCee-eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 653 TAACYTPDGQGALVGSY----KGSCHLYNTSENKL-QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 653 ~sla~spdg~~l~tgs~----Dg~I~IwDl~~~~~-~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
.+++..-.++.+++|+. +-.|.+||++..+. +..+. ..|...|++++|+|.++++|++|+.||.|.|
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~--------eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnl 192 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN--------ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNL 192 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh--------hhccCcceeEEecCCCCCeEEeecccceEEe
Confidence 77777777888888864 56799999998776 33322 5899999999999999999999999999999
Q ss_pred EECCcc---eEEEEeecCCcceEEEEEecCC-CEEEEEECCCcEEEEECCCCCC
Q 002407 728 VDGIDL---VHKFKGFRNTNSQISASLTANG-RYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 728 wD~~~~---~~~~~~~~~~~~v~sv~fspdg-~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
||+... -..+....+...|..+.|..++ +.|.+-+.....++|+++.+..
T Consensus 193 fD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 193 FDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred eecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 996432 1122223345678899999877 4588888999999999998764
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-15 Score=156.67 Aligned_cols=231 Identities=19% Similarity=0.349 Sum_probs=175.5
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcCcccceeeccc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG-~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
+..+++.|...|.|++.+..++++. ..+.+|.++|+.|.|.|+. ++|++|+.|.+||+|++.+..++..+
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~~-----~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf---- 174 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQCS-----KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF---- 174 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhhc-----cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe----
Confidence 3456777779999999998877665 4558999999999999964 69999999999999999887654432
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd 578 (927)
.-+.||.+.|.++.|+.+
T Consensus 175 --------------------------------------------------------------GG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 175 --------------------------------------------------------------GGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred --------------------------------------------------------------cccccccCcEEEEEEcCC
Confidence 123579999999999998
Q ss_pred -cEEEEEeCCCcEEEEeCCCCcE-------------------------EEEE----ecCCceEEEEEccCCCCEEEEEEC
Q 002407 579 -QHLLSSSMDKTVRLWHLSSKTC-------------------------LKIF----SHSDYVTCIQFNPVDDRYFISGSL 628 (927)
Q Consensus 579 -~~L~Sgs~DgtV~lWDl~t~~~-------------------------~~~~----~h~~~V~~v~fsp~dg~~L~sgs~ 628 (927)
.+|+++++|.+|++|++...+. ...| -|..+|.|+.|- ++++++-+-
T Consensus 193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSksc 269 (385)
T KOG1034|consen 193 GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSC 269 (385)
T ss_pred CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeeccc
Confidence 7899999999999999983211 1111 188889999985 589999999
Q ss_pred CCcEEEEeCCC-Cc-------------EEEeccCC-CcE--EEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccc
Q 002407 629 DAKVRIWSIPE-RQ-------------VVDWNDLH-EMV--TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL 691 (927)
Q Consensus 629 Dg~I~IWDl~t-~~-------------~v~~~~~~-~~V--~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~ 691 (927)
++.|..|..-. ++ ++..+..+ ..| ...+|.|-+++||.|...|.|++||++........++.
T Consensus 270 enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~- 348 (385)
T KOG1034|consen 270 ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT- 348 (385)
T ss_pred CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE-
Confidence 99999998621 11 11112222 233 34566788899999999999999999987664222211
Q ss_pred ccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 692 QNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 692 ~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
.......|...+|+.++. +|+....|++|.-||.
T Consensus 349 ----~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 349 ----HSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDR 382 (385)
T ss_pred ----eccccceeeeeeecccCc-EEEEEeCCCcEEEEEe
Confidence 123456789999999987 8888999999999983
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.6e-14 Score=163.84 Aligned_cols=266 Identities=13% Similarity=0.141 Sum_probs=191.3
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEc
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLAN 510 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~ 510 (927)
.+.+|+...+. ...+. -.-...|+|++|+| +..+||.|..+|.|.+||+..+......
T Consensus 223 ~~~vW~~~~p~-~Pe~~----~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s---------------- 281 (555)
T KOG1587|consen 223 VLLVWSLKNPN-TPELV----LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS---------------- 281 (555)
T ss_pred eEEEEecCCCC-CceEE----EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc----------------
Confidence 68889887762 22111 22467899999999 5678888999999999999766432100
Q ss_pred cCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEEEeCC
Q 002407 511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMD 587 (927)
Q Consensus 511 ~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~D 587 (927)
..-.....|..+|+.+.|..+ ..+++++.|
T Consensus 282 -----------------------------------------------~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD 314 (555)
T KOG1587|consen 282 -----------------------------------------------GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD 314 (555)
T ss_pred -----------------------------------------------ccccccccCCcCeEEEEEeccCCCCceEEEecC
Confidence 000112358999999999876 349999999
Q ss_pred CcEEEEeCCCCcE-E-----EEE-------ecCCceEEEEEccCCCCEEEEEECCCcEEEEe---CCCCc------EEEe
Q 002407 588 KTVRLWHLSSKTC-L-----KIF-------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWS---IPERQ------VVDW 645 (927)
Q Consensus 588 gtV~lWDl~t~~~-~-----~~~-------~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWD---l~t~~------~v~~ 645 (927)
|.|..|+++.-.. . ... .....++++.|.+.+...|+.|+.+|.|..=+ ..... ....
T Consensus 315 G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~ 394 (555)
T KOG1587|consen 315 GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTF 394 (555)
T ss_pred CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccc
Confidence 9999998874322 1 111 12356899999998999999999999987733 22222 1134
Q ss_pred ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECC-CCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS-ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 646 ~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~-~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
..|.+.|.++.++|-+..++..+.|.+++||... ....+..+ ..+...|++++|+|..+.+++++..||.
T Consensus 395 ~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~---------~~~~~~v~~vaWSptrpavF~~~d~~G~ 465 (555)
T KOG1587|consen 395 ITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL---------DSSPDYVTDVAWSPTRPAVFATVDGDGN 465 (555)
T ss_pred cccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh---------hhccceeeeeEEcCcCceEEEEEcCCCc
Confidence 5566899999999977666666669999999877 43333332 3566679999999998889999999999
Q ss_pred EEEEECCc--ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 725 IRVVDGID--LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 725 I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
|.|||+.. ................+.|+++|+.|++|...|++++|++..
T Consensus 466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 99999532 111111112244456778888999999999999999999974
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-14 Score=159.14 Aligned_cols=251 Identities=17% Similarity=0.262 Sum_probs=190.4
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEc
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLAN 510 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~ 510 (927)
.++.+|+...+.+ .|+|+||++.|.|++|+.||+.+|+|+.|..|.||.-.-.. .+ .-.|...+.++.
T Consensus 33 ~rlliyD~ndG~l-----lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~L----kYSH~D~IQCMs 100 (1081)
T KOG1538|consen 33 SRLLVYDTSDGTL-----LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---IL----KYSHNDAIQCMS 100 (1081)
T ss_pred CEEEEEeCCCccc-----ccccccccceEEEEEEccCCceeccCCCceeEEEecccccc---ee----eeccCCeeeEee
Confidence 3677888765543 47889999999999999999999999999999999854222 11 245778899999
Q ss_pred cCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCc
Q 002407 511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKT 589 (927)
Q Consensus 511 ~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~Dgt 589 (927)
|+|-...++++..... .+|....+.+...+ -...|.+++|..| .+|+.|-.+|+
T Consensus 101 FNP~~h~LasCsLsdF------------------------glWS~~qK~V~K~k-ss~R~~~CsWtnDGqylalG~~nGT 155 (1081)
T KOG1538|consen 101 FNPITHQLASCSLSDF------------------------GLWSPEQKSVSKHK-SSSRIICCSWTNDGQYLALGMFNGT 155 (1081)
T ss_pred cCchHHHhhhcchhhc------------------------cccChhhhhHHhhh-hheeEEEeeecCCCcEEEEeccCce
Confidence 9999888887754332 12333333333222 2456889999999 67899999999
Q ss_pred EEEEeCCCCcEEEEEe---cCCceEEEEEccCC----CCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCC
Q 002407 590 VRLWHLSSKTCLKIFS---HSDYVTCIQFNPVD----DRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQ 662 (927)
Q Consensus 590 V~lWDl~t~~~~~~~~---h~~~V~~v~fsp~d----g~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~ 662 (927)
|.|-+-...+.+.+-. ...+|++|+|+|.. ...+++..+..++.+|.+....+-..........|+.+.++|.
T Consensus 156 IsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGE 235 (1081)
T KOG1538|consen 156 ISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGE 235 (1081)
T ss_pred EEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCc
Confidence 9999765544444443 67899999999943 3578888888889998887655544555666788999999999
Q ss_pred EEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 663 GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 663 ~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
++++|+.|+.+++|--. |-.+.+. ......|..++..|++. .++.|+.||+|.-|+
T Consensus 236 y~LiGGsdk~L~~fTR~-GvrLGTv---------g~~D~WIWtV~~~PNsQ-~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFTRD-GVRLGTV---------GEQDSWIWTVQAKPNSQ-YVVVGCQDGTIACYN 291 (1081)
T ss_pred EEEEccCCCceEEEeec-CeEEeec---------cccceeEEEEEEccCCc-eEEEEEccCeeehhh
Confidence 99999999999999644 4444332 23567899999999886 799999999999987
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=174.89 Aligned_cols=287 Identities=16% Similarity=0.273 Sum_probs=219.6
Q ss_pred ceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccC
Q 002407 445 ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 445 ~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
....++.|.+|..+|.|+.|...|.|++||+.|..|+||..++..++... .+|...+.-++.+.+..++++++.+
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-----rGhs~ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-----RGHSGDITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-----CCCccccchhccchhhhhhhhcccC
Confidence 44455678899999999999999999999999999999999888877764 6788888888888888888888888
Q ss_pred CceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEE
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKI 603 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~ 603 (927)
..|. +|.+ .+.++..+.||++.|++|+|+|-. +.+.||++++||.+ ...+..
T Consensus 254 ~vIr-----------------------vWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r-~~~~~y 306 (1113)
T KOG0644|consen 254 KVIR-----------------------VWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR-LEPRIY 306 (1113)
T ss_pred ceEE-----------------------EEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEecccc-cccccc
Confidence 7773 4444 467888899999999999999954 88899999999988 111111
Q ss_pred ------EecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCC-CCEEEEEECCCeEEEE
Q 002407 604 ------FSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPD-GQGALVGSYKGSCHLY 676 (927)
Q Consensus 604 ------~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spd-g~~l~tgs~Dg~I~Iw 676 (927)
+.....+..+.|.. ++..+++++.|+.-..|.+...... ...+.-+.++.+ ..+.+++-.+-.+.+|
T Consensus 307 ~prp~~~~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~~~-----~~~lif~t~ssd~~~~~~~ar~~~~~~vw 380 (1113)
T KOG0644|consen 307 VPRPLKFTEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQLAWR-----SNLLIFVTRSSDLSSIVVTARNDHRLCVW 380 (1113)
T ss_pred CCCCCCcccccceeeeeccc-cccccccccCCcccccchhhHhhhh-----ccceEEEeccccccccceeeeeeeEeeee
Confidence 12445677788877 8888999999999988876432211 111111112211 2466677778889999
Q ss_pred ECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCC
Q 002407 677 NTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGR 756 (927)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~ 756 (927)
++.++.+.+.. .+|...+..+.++|-++...++++.||.+.|||....+..-........+....|++||.
T Consensus 381 nl~~g~l~H~l---------~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgt 451 (1113)
T KOG0644|consen 381 NLYTGQLLHNL---------MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGT 451 (1113)
T ss_pred ecccchhhhhh---------cccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCc
Confidence 99999877664 488899999999999988888999999999999654332222223356677889999999
Q ss_pred EEEEEECCCcEEEEECCCCCCc
Q 002407 757 YVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 757 ~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
.++....-|.++|.....++..
T Consensus 452 s~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 452 SIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred eEecCCCCCceEEeccCCCccc
Confidence 9999999999999987665443
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.9e-15 Score=163.67 Aligned_cols=245 Identities=16% Similarity=0.200 Sum_probs=178.7
Q ss_pred cCCCCeEEEccCceEEEEeccC---cccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCccccee
Q 002407 418 DDSQDVSFHGQERVRVRQYGKS---CKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494 (927)
Q Consensus 418 ~d~~~~~~~g~~~~~V~i~~~~---s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l 494 (927)
......++++..++++.+|+++ ......+..+-+|.+|.++|.|+++.+.+.++++||.||+|+.|++.........
T Consensus 303 ~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds 382 (577)
T KOG0642|consen 303 HPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDS 382 (577)
T ss_pred CCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccc
Confidence 3445667899999999999982 2223345566789999999999999999999999999999999987522100000
Q ss_pred ecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEE
Q 002407 495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS 574 (927)
Q Consensus 495 ~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~ 574 (927)
.+ .......|.||.+.|+.++
T Consensus 383 ------------------~d-----------------------------------------p~vl~~~l~Ghtdavw~l~ 403 (577)
T KOG0642|consen 383 ------------------YD-----------------------------------------PSVLSGTLLGHTDAVWLLA 403 (577)
T ss_pred ------------------cC-----------------------------------------cchhccceeccccceeeee
Confidence 00 0012346789999999999
Q ss_pred ecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC--
Q 002407 575 WSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-- 648 (927)
Q Consensus 575 ~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~-- 648 (927)
+|.. .+|++++.||+|++|+.....+ .+|. ....-+.+.|-.....+.++...-+.--++++.....+.++..
T Consensus 404 ~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~ 482 (577)
T KOG0642|consen 404 LSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSA 482 (577)
T ss_pred ecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccC
Confidence 9998 7899999999999999887766 4443 3445566666541212333322222223333333333332221
Q ss_pred ------CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC
Q 002407 649 ------HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (927)
Q Consensus 649 ------~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D 722 (927)
...+..+.++|.+.+.+++..|+.|+++|..++.++... ..|...++++++.|++. +|++++.|
T Consensus 483 ~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~---------~a~~~svtslai~~ng~-~l~s~s~d 552 (577)
T KOG0642|consen 483 SPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM---------VAHKDSVTSLAIDPNGP-YLMSGSHD 552 (577)
T ss_pred CCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe---------eeccceecceeecCCCc-eEEeecCC
Confidence 145778889999999999999999999999999988775 37889999999999988 89999999
Q ss_pred CcEEEEECCc
Q 002407 723 SRIRVVDGID 732 (927)
Q Consensus 723 g~I~VwD~~~ 732 (927)
+.+++|....
T Consensus 553 ~sv~l~kld~ 562 (577)
T KOG0642|consen 553 GSVRLWKLDV 562 (577)
T ss_pred ceeehhhccc
Confidence 9999998543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-13 Score=164.07 Aligned_cols=258 Identities=13% Similarity=0.201 Sum_probs=176.9
Q ss_pred eEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 450 QEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG-~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
..|..|...|..++.+++. .+++|||.||+|+||+..+-.....
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~----------------------------------- 1086 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG----------------------------------- 1086 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc-----------------------------------
Confidence 4567899999999988754 9999999999999999865321100
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc-------E
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT-------C 600 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~-------~ 600 (927)
..+...++..-...+.++...+. ..+|.++.||.|++.+++... +
T Consensus 1087 ---------------------------s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~ 1139 (1431)
T KOG1240|consen 1087 ---------------------------SARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQ 1139 (1431)
T ss_pred ---------------------------eeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeee
Confidence 00112233334567788888877 789999999999999998621 1
Q ss_pred EEEEe--cCC-ceEEEEEccCCCC-EEEEEECCCcEEEEeCCCCcEEEe---ccCCCcEEEEEECCCCCEEEEEECCCeE
Q 002407 601 LKIFS--HSD-YVTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQVVDW---NDLHEMVTAACYTPDGQGALVGSYKGSC 673 (927)
Q Consensus 601 ~~~~~--h~~-~V~~v~fsp~dg~-~L~sgs~Dg~I~IWDl~t~~~v~~---~~~~~~V~sla~spdg~~l~tgs~Dg~I 673 (927)
..... ..+ .|..-+|...... .|+.+..-+.|..||++....... ...++.|++++.+|.+.++++|+..|.+
T Consensus 1140 ~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l 1219 (1431)
T KOG1240|consen 1140 VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQL 1219 (1431)
T ss_pred eecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceE
Confidence 11111 222 3344455543444 677888889999999988654433 3345789999999999999999999999
Q ss_pred EEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC--cEEEEE-E-CCCcEEEEECCcceEEEEeecC-------
Q 002407 674 HLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS--SEVLVT-S-ADSRIRVVDGIDLVHKFKGFRN------- 742 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~--~~Llsg-s-~Dg~I~VwD~~~~~~~~~~~~~------- 742 (927)
.+||++=+..+.... ..+..+|+.+..+|-.+ ...+++ + ..+.|.+|+.............
T Consensus 1220 ~lWDLRF~~~i~sw~--------~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls 1291 (1431)
T KOG1240|consen 1220 VLWDLRFRVPILSWE--------HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILS 1291 (1431)
T ss_pred EEEEeecCceeeccc--------CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchh
Confidence 999999887776654 24557777777766433 344444 4 5788999995433322222111
Q ss_pred ------------CcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 743 ------------TNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 743 ------------~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
.......++..-+.++++|+.|..|+.||......
T Consensus 1292 ~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1292 YALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred hhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 11222344445567899999999999999987654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.3e-15 Score=160.22 Aligned_cols=305 Identities=20% Similarity=0.238 Sum_probs=218.9
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCC--CCeecccccCCc
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE--PTSLSPKHLDNH 526 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd--~~~la~~~~~~~ 526 (927)
...|..|.|.|..|.|...|..|+||+.|..|.+||+..+..+..+ ..+|...++...|-|. ..-++..+.++.
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f----~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF----ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc----ccccccchhhhhccCCCCCcCceeccccCc
Confidence 3567899999999999999999999999999999999988776665 5788888887777774 344555556665
Q ss_pred eeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEE
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIF 604 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~ 604 (927)
+......... .-+....+..|.++|..++.-|+ ..|++++.|+.|.-+|+.+..+...+
T Consensus 211 vr~s~i~~t~-------------------~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~ 271 (559)
T KOG1334|consen 211 VRVSEILETG-------------------YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF 271 (559)
T ss_pred eeeeeecccc-------------------ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee
Confidence 5322111100 00123345679999999999997 67999999999999999988765554
Q ss_pred e----cCC---ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE-------Eec------cCCCcEEEEEECCCCCEE
Q 002407 605 S----HSD---YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-------DWN------DLHEMVTAACYTPDGQGA 664 (927)
Q Consensus 605 ~----h~~---~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v-------~~~------~~~~~V~sla~spdg~~l 664 (927)
. +.. ....|+.+|.+..+|++++.|..+++||.+.-... .+. ..+-.|++++|+.++.-|
T Consensus 272 ~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 272 VCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 3 333 57889999977789999999999999998653211 111 223479999999999999
Q ss_pred EEEECCCeEEEEECCCCeeeeecccc---ccccc-ccCCC--CCeEEEEEcCCCCcEEEEEECCCcEEEEECC--cceEE
Q 002407 665 LVGSYKGSCHLYNTSENKLQQKSPIN---LQNKK-KRSHQ--RKITGFQFAPGSSSEVLVTSADSRIRVVDGI--DLVHK 736 (927)
Q Consensus 665 ~tgs~Dg~I~IwDl~~~~~~~~~~i~---~~~~~-~~~h~--~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~--~~~~~ 736 (927)
+++..|-.|+++.-..+.-....... ...+. .++|. ..|.++-|.--...++++|+.-|.|.||+.. .++..
T Consensus 352 LaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~ 431 (559)
T KOG1334|consen 352 LASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRF 431 (559)
T ss_pred eeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHH
Confidence 99999999999954433221110000 00011 23443 3477777653334488999999999999943 34444
Q ss_pred EEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 737 FKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 737 ~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
+.+-.+ -|.|+.-+|--..||+.+-|..|+||--.+.+..
T Consensus 432 MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~ 471 (559)
T KOG1334|consen 432 MEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERA 471 (559)
T ss_pred hhcccc--eEeccCCCCCCchhhccCCccceeeecCCccccc
Confidence 444433 6888888999999999999999999988655443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.9e-14 Score=148.70 Aligned_cols=209 Identities=14% Similarity=0.219 Sum_probs=165.2
Q ss_pred EEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCC------CCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcE
Q 002407 562 SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS------SKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKV 632 (927)
Q Consensus 562 ~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~------t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I 632 (927)
.+.+|.+.|.+|.|+.+ .+|++|+.|..++||++. +.+++.... |...|.|++|.. ...+|++|..+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence 45789999999999987 779999999999999986 346666665 668999999998 88899999999999
Q ss_pred EEEeCCCCcEEEeccCCC---cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc
Q 002407 633 RIWSIPERQVVDWNDLHE---MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 633 ~IWDl~t~~~v~~~~~~~---~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
.+.|+.+.+.+..+.+.. .|..+..+|-.+.|++.+.++.|.+||.+.......... ..........+.|+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~------~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL------PANSGKNFYTAEFH 203 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee------ecCCCccceeeeec
Confidence 999999999988887775 899999999999999999999999999987652111111 02445667889999
Q ss_pred CCCCcEEEEEECCCcEEEEECCcceEEE------Eeec-CCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 710 PGSSSEVLVTSADSRIRVVDGIDLVHKF------KGFR-NTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 710 pdg~~~Llsgs~Dg~I~VwD~~~~~~~~------~~~~-~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
|..+.+|++.+..+-+-+||.+.....+ ++.. .....+.+.|+|+|..|++--....-.+||+-+...
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc
Confidence 9999899999999999999965433221 1111 122346788999999988876666667788876443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-13 Score=159.55 Aligned_cols=305 Identities=16% Similarity=0.187 Sum_probs=207.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEc--cCCCCCeecccccCCceeeec
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLAN--GSPEPTSLSPKHLDNHLEKKR 531 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~--~spd~~~la~~~~~~~i~~~~ 531 (927)
+....-..+.|+|-...++++...-.|+|||.+.++....+...... ...|..+. ...|..++.++..++.+..++
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~--~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP--DTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCC--CCccceeeeecccchhheeeeccCceEEEec
Confidence 33446677899998889999987889999999998877666433221 12232222 233566777888888887776
Q ss_pred ccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCC
Q 002407 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSD 608 (927)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~ 608 (927)
.......+. .++ .....+++ .+.+-.+.-.-+.|... ++|++++.-..|+|||....+++.-+. ...
T Consensus 1140 ~y~~~~~~~----eLV--Taw~~Ls~----~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t 1209 (1387)
T KOG1517|consen 1140 DYADKWKKP----ELV--TAWSSLSD----QLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSST 1209 (1387)
T ss_pred ccccccCCc----eeE--Eeeccccc----cCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCc
Confidence 543221000 000 00001111 01111222244678766 889999889999999999988887776 556
Q ss_pred ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE----EEeccCCCc--EEEEEECCCCCE-EEEEECCCeEEEEECCCC
Q 002407 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV----VDWNDLHEM--VTAACYTPDGQG-ALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 609 ~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~----v~~~~~~~~--V~sla~spdg~~-l~tgs~Dg~I~IwDl~~~ 681 (927)
.|+++.-+-..++.|++|..||.|++||.+.... -.+..|... |..+.+.+.|-. |++|+.+|.|++||++..
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 7888877665789999999999999999876432 235556555 999999997755 999999999999999986
Q ss_pred eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-cceEEEEee-----cCCcceEEEEEecCC
Q 002407 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-DLVHKFKGF-----RNTNSQISASLTANG 755 (927)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-~~~~~~~~~-----~~~~~v~sv~fspdg 755 (927)
.......+... ......++++..+++.+ .+++|+. +.|+||+.. +.+..++.. .....+.+++|+|-.
T Consensus 1290 ~~e~~~~iv~~----~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1290 SKETFLTIVAH----WEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred cccccceeeec----cccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchh
Confidence 33333222110 11133599999999876 6777777 999999943 222222211 124567899999999
Q ss_pred CEEEEEECCCcEEEEECCCCC
Q 002407 756 RYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 756 ~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
-+||+|+.|..|.||......
T Consensus 1364 ~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1364 LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred HhhhhccCCceEEEeecCCcC
Confidence 999999999999999987654
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.4e-13 Score=154.56 Aligned_cols=281 Identities=17% Similarity=0.191 Sum_probs=191.4
Q ss_pred CceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEE
Q 002407 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (927)
Q Consensus 429 ~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~ 508 (927)
...++.+|....+. ........-..|.-.++|.++||+++++|+|..||.|.||.--..+.
T Consensus 179 ~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~------------------ 239 (792)
T KOG1963|consen 179 HMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD------------------ 239 (792)
T ss_pred EeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc------------------
Confidence 34455666655433 11111112245777899999999999999999999999996321100
Q ss_pred EccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCC
Q 002407 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD 587 (927)
Q Consensus 509 v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~D 587 (927)
.....+.++-|.+.|++++|+++ .+|++|+..
T Consensus 240 -----------------------------------------------~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E 272 (792)
T KOG1963|consen 240 -----------------------------------------------DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE 272 (792)
T ss_pred -----------------------------------------------ccccceEEEecccccceeEEecCCceEeecccc
Confidence 00123345669999999999999 789999999
Q ss_pred CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc------------CCCcEEEE
Q 002407 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND------------LHEMVTAA 655 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~------------~~~~V~sl 655 (927)
+.+.+|.+.+++....-....+|..+.++| ++.+.+....|..|.+....+........ ...-.+.+
T Consensus 273 ~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~ 351 (792)
T KOG1963|consen 273 GVLVLWQLETGKKQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGV 351 (792)
T ss_pred eEEEEEeecCCCcccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeE
Confidence 999999999999333334889999999999 99999999999999999876654332111 13456788
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccc-c-CCCCCeEEEEEcCCCCcEEEEEE--------CC--C
Q 002407 656 CYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKK-R-SHQRKITGFQFAPGSSSEVLVTS--------AD--S 723 (927)
Q Consensus 656 a~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~-~-~h~~~Vtsl~fspdg~~~Llsgs--------~D--g 723 (927)
+++|.-+.++..+..|.|.+||+.+...+..+.+....... . .+.-.++.++.+-.|. ++++.- .| -
T Consensus 352 ~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs-~maT~E~~~d~~~~~~~e~ 430 (792)
T KOG1963|consen 352 SIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGS-WMATLEARIDKFNFFDGEV 430 (792)
T ss_pred EEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccce-EEEEeeeeehhhhccCceE
Confidence 99997778888889999999999988877666543322111 1 2334577777777754 566542 33 3
Q ss_pred cEEEEECCc------ceEEEEeecCCcceEEEEEe-cCCC-EEEEEECCCcEEEEECCCCCCc
Q 002407 724 RIRVVDGID------LVHKFKGFRNTNSQISASLT-ANGR-YVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 724 ~I~VwD~~~------~~~~~~~~~~~~~v~sv~fs-pdg~-~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
.+++|-... +..... ..|.......+|. +... .+++++.||.++||-+...+..
T Consensus 431 ~LKFW~~n~~~kt~~L~T~I~-~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~ 492 (792)
T KOG1963|consen 431 SLKFWQYNPNSKTFILNTKIN-NPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI 492 (792)
T ss_pred EEEEEEEcCCcceeEEEEEEe-cCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc
Confidence 467786322 222222 2233334444443 3333 7999999999999999776543
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-13 Score=140.98 Aligned_cols=246 Identities=14% Similarity=0.221 Sum_probs=177.5
Q ss_pred ecCCCCEEEEEEcCCCC-----EEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 453 QAHNGSIWSIKFSLDGR-----YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~-----~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
..|.-+++.+.|.|+.. +|||.+ -.+|||.+...+....+..
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~------------------------------- 139 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQS------------------------------- 139 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhh-------------------------------
Confidence 46999999999999863 677765 3799999875322111100
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCc----EE
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT----CL 601 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~----~~ 601 (927)
+.. ...-..+..++++..|..- .+|.+++-|-+..|||++++. ..
T Consensus 140 ------------------------~L~-----~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT 190 (364)
T KOG0290|consen 140 ------------------------VLN-----NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT 190 (364)
T ss_pred ------------------------hhc-----cCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee
Confidence 000 0011236778999999874 789999999999999999973 34
Q ss_pred EEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc---EEEeccC-CCcEEEEEECCC-CCEEEEEECC-CeEEE
Q 002407 602 KIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ---VVDWNDL-HEMVTAACYTPD-GQGALVGSYK-GSCHL 675 (927)
Q Consensus 602 ~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~---~v~~~~~-~~~V~sla~spd-g~~l~tgs~D-g~I~I 675 (927)
+.+.|...|..|+|....-+.|++.+.||.||+||++..+ ++..-.. ......++|++. -+++++-..| ..|.|
T Consensus 191 QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i 270 (364)
T KOG0290|consen 191 QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI 270 (364)
T ss_pred EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence 5566999999999998556789999999999999998754 2222222 467888999984 4567765555 45999
Q ss_pred EECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceE-----EEEeecCCcceEEEE
Q 002407 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH-----KFKGFRNTNSQISAS 750 (927)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~-----~~~~~~~~~~v~sv~ 750 (927)
.|++...... .+.+.|...|++++|.|.....|++++.|.++.|||...... .+........|..+.
T Consensus 271 LDiR~P~tpv--------a~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~ 342 (364)
T KOG0290|consen 271 LDIRVPCTPV--------ARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQ 342 (364)
T ss_pred EEecCCCcce--------ehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeee
Confidence 9998654221 123689999999999999998999999999999999543322 222334567789999
Q ss_pred Eec-CCCEEEEEECCCcEEE
Q 002407 751 LTA-NGRYVVSASEDSYVYV 769 (927)
Q Consensus 751 fsp-dg~~Lasgs~Dg~I~I 769 (927)
|++ .+.+|+.+.. ..+.|
T Consensus 343 Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 343 WSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred ecccCCCEEEEEec-CeeeE
Confidence 995 4567777653 33443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-12 Score=147.22 Aligned_cols=279 Identities=14% Similarity=0.181 Sum_probs=174.8
Q ss_pred EEEEeCCCcEEEEeCCC-Cc--EEEEEecCCceEEEEEccCCCCEEEEEE-CCCcEEEEeCC-CCcE--EEeccCCCcEE
Q 002407 581 LLSSSMDKTVRLWHLSS-KT--CLKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIP-ERQV--VDWNDLHEMVT 653 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t-~~--~~~~~~h~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~-t~~~--v~~~~~~~~V~ 653 (927)
+++...++.|.+|++.+ ++ .+..+.+......++++| ++++|++++ .++.|.+|++. ++++ +........+.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 44557799999999964 33 455565667788999999 898887664 47889999997 3443 23333345678
Q ss_pred EEEECCCCCEEEEEEC-CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc
Q 002407 654 AACYTPDGQGALVGSY-KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID 732 (927)
Q Consensus 654 sla~spdg~~l~tgs~-Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~ 732 (927)
.++|+|++++|++++. ++.|.+|++.+........ . ...+.....+++++|+++.++++...++.|.+||...
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~-~-----~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPI-Q-----IIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCce-e-----eccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 8999999999888764 7899999997432111100 0 0112234677889999986556667789999999643
Q ss_pred ceE-------EEEeecCCcceEEEEEecCCCEEEEEEC-CCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEec
Q 002407 733 LVH-------KFKGFRNTNSQISASLTANGRYVVSASE-DSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPW 804 (927)
Q Consensus 733 ~~~-------~~~~~~~~~~v~sv~fspdg~~Lasgs~-Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~ 804 (927)
... ..... .......+.|+|+|++|+++.. ++.|.+|+++..... . ....... .+
T Consensus 158 ~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~--~---~~~~~~~---------~~-- 220 (330)
T PRK11028 158 DGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE--I---ECVQTLD---------MM-- 220 (330)
T ss_pred CCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC--E---EEEEEEe---------cC--
Confidence 111 01111 1233567899999999988876 899999999743110 0 0000000 00
Q ss_pred CCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhc---cccc
Q 002407 805 PGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLV---LTAR 881 (927)
Q Consensus 805 ~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~---~~~~ 881 (927)
+.. ..++ .....+.|+|++++|+.+. ..+..+.+|+.+... ....
T Consensus 221 p~~----------------~~~~-------------~~~~~i~~~pdg~~lyv~~---~~~~~I~v~~i~~~~~~~~~~~ 268 (330)
T PRK11028 221 PAD----------------FSDT-------------RWAADIHITPDGRHLYACD---RTASLISVFSVSEDGSVLSFEG 268 (330)
T ss_pred CCc----------------CCCC-------------ccceeEEECCCCCEEEEec---CCCCeEEEEEEeCCCCeEEEeE
Confidence 000 0000 0112355899999999974 345677778653210 1111
Q ss_pred cCCCceecccCCCCCcccCCCCCEEEEEcC-CCcEEEeec
Q 002407 882 NRSPRTSLDISNGISSSISAWGMVIVTAGL-RGEIRAYQN 920 (927)
Q Consensus 882 ~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~-DG~IrvW~~ 920 (927)
+... ...+. .++++|||++|+++.. +++|.+|+.
T Consensus 269 ~~~~---~~~p~--~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 269 HQPT---ETQPR--GFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred EEec---cccCC--ceEECCCCCEEEEEEccCCcEEEEEE
Confidence 1110 00111 5789999999998876 899999984
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-14 Score=158.34 Aligned_cols=244 Identities=21% Similarity=0.333 Sum_probs=163.9
Q ss_pred cceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeeccccc
Q 002407 444 TALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL 523 (927)
Q Consensus 444 ~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~ 523 (927)
.++-..++|.||+|.|+|++|+.+|.+||+|+.|-.+.|||.-..+.+..
T Consensus 38 rrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs------------------------------ 87 (758)
T KOG1310|consen 38 RRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS------------------------------ 87 (758)
T ss_pred hhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee------------------------------
Confidence 34455578999999999999999999999999999999999753322211
Q ss_pred CCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCC---
Q 002407 524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSS--- 597 (927)
Q Consensus 524 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t--- 597 (927)
.-.||...|.++.|-|. ..+++|..|+.|+|+|+..
T Consensus 88 --------------------------------------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~ 129 (758)
T KOG1310|consen 88 --------------------------------------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKE 129 (758)
T ss_pred --------------------------------------eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccc
Confidence 22479999999999884 6789999999999999984
Q ss_pred -------CcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE-----------EeccCCCcEEEEEEC
Q 002407 598 -------KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-----------DWNDLHEMVTAACYT 658 (927)
Q Consensus 598 -------~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v-----------~~~~~~~~V~sla~s 658 (927)
.+....+. |...|..|+..|...+.|.+++.||+|+-+|++....- .....--...++.++
T Consensus 130 ~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltis 209 (758)
T KOG1310|consen 130 GGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTIS 209 (758)
T ss_pred cccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeec
Confidence 12233334 89999999999955599999999999999999873211 111111357789999
Q ss_pred CC-CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE-EcCCCCcEEEEEECCCcEEEEECCcceEE
Q 002407 659 PD-GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ-FAPGSSSEVLVTSADSRIRVVDGIDLVHK 736 (927)
Q Consensus 659 pd-g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~-fspdg~~~Llsgs~Dg~I~VwD~~~~~~~ 736 (927)
|. ..+|++|+.|-..++||.+.......-. ............|+. |+|.. + ...+|.+..
T Consensus 210 p~rp~~laVGgsdpfarLYD~Rr~lks~~s~----~~~~~~pp~~~~cv~yf~p~h---l--kn~~gn~~~--------- 271 (758)
T KOG1310|consen 210 PSRPYYLAVGGSDPFARLYDRRRVLKSFRSD----GTMNTCPPKDCRCVRYFSPGH---L--KNSQGNLDR--------- 271 (758)
T ss_pred CCCCceEEecCCCchhhhhhhhhhccCCCCC----ccccCCCCcccchhheecCcc---c--cCccccccc---------
Confidence 94 5689999999999999964322111000 000001112222332 44432 1 111111110
Q ss_pred EEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 737 FKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 737 ~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
...-++-+.|+|+|.-|+..-..-.||++|+..++.+
T Consensus 272 -----~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 272 -----YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred -----ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 0112456789999877666655567999999876544
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.1e-14 Score=156.01 Aligned_cols=255 Identities=15% Similarity=0.186 Sum_probs=174.7
Q ss_pred cCceEEEEeccCc-ccccceeeeeEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCcccc
Q 002407 428 QERVRVRQYGKSC-KDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM 505 (927)
Q Consensus 428 ~~~~~V~i~~~~s-~~l~~l~~~q~L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~ 505 (927)
...|.|-+|...- +.+....+ -.|. ....|+.+.|.| |...||.++.||.|+||.+..+.....
T Consensus 600 g~gG~iai~el~~PGrLPDgv~-p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~------------ 665 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVM-PGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN------------ 665 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccc-cccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc------------
Confidence 4568888997653 22222221 1111 456799999999 788999999999999999876532111
Q ss_pred EEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEE
Q 002407 506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLS 583 (927)
Q Consensus 506 v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~S 583 (927)
...+...+.+|...|+.|.|+|= +.|++
T Consensus 666 --------------------------------------------------~~tPe~~lt~h~eKI~slRfHPLAadvLa~ 695 (1012)
T KOG1445|consen 666 --------------------------------------------------EMTPEKILTIHGEKITSLRFHPLAADVLAV 695 (1012)
T ss_pred --------------------------------------------------cCCcceeeecccceEEEEEecchhhhHhhh
Confidence 12445567889999999999995 88999
Q ss_pred EeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE-EeccC--CCcEEEEEECC
Q 002407 584 SSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDL--HEMVTAACYTP 659 (927)
Q Consensus 584 gs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v-~~~~~--~~~V~sla~sp 659 (927)
++.|-+|+|||+.+++....+. |++.|..++|+| +|+.+++.+.||+|++|..+.++.. ..-.. ...-..+.|.-
T Consensus 696 asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac 774 (1012)
T KOG1445|consen 696 ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC 774 (1012)
T ss_pred hhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe
Confidence 9999999999999988766665 999999999999 9999999999999999998876532 21111 13345677888
Q ss_pred CCCEEEEEECCC----eEEEEECCCCee--eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC--
Q 002407 660 DGQGALVGSYKG----SCHLYNTSENKL--QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-- 731 (927)
Q Consensus 660 dg~~l~tgs~Dg----~I~IwDl~~~~~--~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-- 731 (927)
+|.++++.+.|. .|.+||..+-.. +.+..+... ..+.--.+.+|...++++|-.|..|.+|...
T Consensus 775 dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva--------ps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 775 DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA--------PSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred cCcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc--------CccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 999988887764 588888765432 222111110 0111112456666688888899999999843
Q ss_pred -cceEEEEeecCCcceEEEEEecCC
Q 002407 732 -DLVHKFKGFRNTNSQISASLTANG 755 (927)
Q Consensus 732 -~~~~~~~~~~~~~~v~sv~fspdg 755 (927)
..+..+..+.....-..++|.+..
T Consensus 847 sPy~lpl~~f~sp~~hqGl~fl~K~ 871 (1012)
T KOG1445|consen 847 SPYLLPLAPFMSPVGHQGLAFLQKL 871 (1012)
T ss_pred CceeeecccccCCCcccceeeeccc
Confidence 223333333333333345555543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-14 Score=143.90 Aligned_cols=281 Identities=16% Similarity=0.210 Sum_probs=179.9
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeee
Q 002407 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~ 530 (927)
.|++|.+.|+++.|..+++ |.+|..-|.|++|.+.+......+. ..+...+..+..-|.+ .+.+.+.+..+
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r----~~g~~~it~lq~~p~d-~l~tqgRd~~L--- 79 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIR----LFGRLFITNLQSIPND-SLDTQGRDPLL--- 79 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhh----hhccceeeceeecCCc-chhhcCCCceE---
Confidence 3568999999999988775 9999999999999998876554432 1122333333333332 22233333333
Q ss_pred cccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcE----------EEEEeCCC-cEEEEeCCCCc
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQH----------LLSSSMDK-TVRLWHLSSKT 599 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~----------L~Sgs~Dg-tV~lWDl~t~~ 599 (927)
.+|.+...... .-|.-.++.+.|.+..+ ++.-+... .+.+-|.....
T Consensus 80 --------------------~lw~ia~s~~i--~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t 137 (323)
T KOG0322|consen 80 --------------------ILWTIAYSAFI--SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT 137 (323)
T ss_pred --------------------EEEEccCcceE--EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc
Confidence 45555553333 23445555666654211 11111100 02222222222
Q ss_pred EEEEEe-----cCCceEEEEEccCCCC--EEEEEECCCcEEEEeCCCCcEE-----------EeccCCCcEEEEEECCCC
Q 002407 600 CLKIFS-----HSDYVTCIQFNPVDDR--YFISGSLDAKVRIWSIPERQVV-----------DWNDLHEMVTAACYTPDG 661 (927)
Q Consensus 600 ~~~~~~-----h~~~V~~v~fsp~dg~--~L~sgs~Dg~I~IWDl~t~~~v-----------~~~~~~~~V~sla~spdg 661 (927)
.+.... ..+.+.|..+...++. ++++|..+|.+.+||+.++..+ ....|..+|.++.|.+.-
T Consensus 138 qv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~ 217 (323)
T KOG0322|consen 138 QVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC 217 (323)
T ss_pred eeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh
Confidence 222221 4456777765443333 4678889999999999986322 244567899999999876
Q ss_pred CEEEEEECCCeEEEEECCCC--eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEE
Q 002407 662 QGALVGSYKGSCHLYNTSEN--KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKF 737 (927)
Q Consensus 662 ~~l~tgs~Dg~I~IwDl~~~--~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~ 737 (927)
..=++|+.+..+..|.+... .+.....+ .-....|..+.+-||++ .+++++.|+.||||.-++ .+..+
T Consensus 218 ~rGisgga~dkl~~~Sl~~s~gslq~~~e~-------~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLAVL 289 (323)
T KOG0322|consen 218 DRGISGGADDKLVMYSLNHSTGSLQIRKEI-------TLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLAVL 289 (323)
T ss_pred cCCcCCCccccceeeeeccccCcccccceE-------EecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCchhhh
Confidence 66778888888999988653 22221111 12344578888999987 899999999999998544 45555
Q ss_pred EeecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 738 KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 738 ~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
+.| ...|.+++|+|+..++|+++.|+.|-+|++
T Consensus 290 kyH--sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 290 KYH--SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhh--hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 655 477999999999999999999999999986
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-12 Score=131.31 Aligned_cols=280 Identities=16% Similarity=0.219 Sum_probs=187.6
Q ss_pred eeeecCCCCeEEEccCceEEEEeccCcc-----cccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC
Q 002407 414 SSATDDSQDVSFHGQERVRVRQYGKSCK-----DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 414 ~sa~~d~~~~~~~g~~~~~V~i~~~~s~-----~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~ 488 (927)
+.+......+++.|...|.|.++.+.+- +-......-..++|.++|+.|+|. ..+|++|+ ||.|+=|.+.+.
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~ 91 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEE 91 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhh
Confidence 3344555667788888888888765431 111222233458999999999998 34788887 699999998654
Q ss_pred cccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCC
Q 002407 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568 (927)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~ 568 (927)
....... .+|... .|.++-.-.-.
T Consensus 92 ~es~~~K-------------------------------------------------------~lwe~~-~P~~~~~~evP 115 (325)
T KOG0649|consen 92 EESLATK-------------------------------------------------------RLWEVK-IPMQVDAVEVP 115 (325)
T ss_pred hhhccch-------------------------------------------------------hhhhhc-CccccCcccCC
Confidence 3211000 000000 00000011234
Q ss_pred CEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec
Q 002407 569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN 646 (927)
Q Consensus 569 ~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~ 646 (927)
.|++|...|. +-+++++.|+.++-||+++|+..+++. |+++|.++.--. ....+++|+.||+++|||.++++.+..+
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEe
Confidence 6888988887 778888899999999999999999998 999999999855 4557899999999999999999887755
Q ss_pred cCC-----------CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 647 DLH-----------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 647 ~~~-----------~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
... ..|.+++. +..++++|+ ...+.+|.++..+....+++ ..++..+.|..+ .
T Consensus 195 e~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpi----------pa~v~~v~F~~d---~ 258 (325)
T KOG0649|consen 195 EPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPI----------PARVHLVDFVDD---C 258 (325)
T ss_pred ccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEec----------ccceeEeeeecc---e
Confidence 432 24555554 455777775 45799999999988887654 355777778765 6
Q ss_pred EEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecC-CCEEEEEECCCcEEEE
Q 002407 716 VLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTAN-GRYVVSASEDSYVYVW 770 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspd-g~~Lasgs~Dg~I~IW 770 (927)
+++++....|.-|.....+...... ......+..|+-. -++|-.++....+.|+
T Consensus 259 vl~~G~g~~v~~~~l~Gvl~a~ip~-~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 259 VLIGGEGNHVQSYTLNGVLQANIPV-ESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred EEEeccccceeeeeeccEEEEeccC-CccceeeecccCCceEEEEecccceeeeee
Confidence 8888888889999865444433222 1222344444332 2445555666666665
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=137.02 Aligned_cols=205 Identities=18% Similarity=0.260 Sum_probs=151.3
Q ss_pred EEEEEecCC-cEEEEEeCCCcEEEEeCCCC--------------cEEEEEecCCceEEEEEc-------cCCCCEEEEEE
Q 002407 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSK--------------TCLKIFSHSDYVTCIQFN-------PVDDRYFISGS 627 (927)
Q Consensus 570 V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~--------------~~~~~~~h~~~V~~v~fs-------p~dg~~L~sgs 627 (927)
...+.|+|| ..|++-+.|..+.+|++... .....+.....|..-+|- | +.+++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC-ccceeeecc
Confidence 345789999 67999999999999998621 111122245567777774 5 678999999
Q ss_pred CCCcEEEEeCCCCcEEEe---ccCCC---cEEEEEECCCCCEEEEEECCCeEEEEEC-CCCeeeeecccccccccccCCC
Q 002407 628 LDAKVRIWSIPERQVVDW---NDLHE---MVTAACYTPDGQGALVGSYKGSCHLYNT-SENKLQQKSPINLQNKKKRSHQ 700 (927)
Q Consensus 628 ~Dg~I~IWDl~t~~~v~~---~~~~~---~V~sla~spdg~~l~tgs~Dg~I~IwDl-~~~~~~~~~~i~~~~~~~~~h~ 700 (927)
.+.-|++||.-++++... .++.+ ...+++|+|||..|++|. ...|++||+ +.+........ ..+.+.+..
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t--~~~~k~gq~ 207 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT--VTKGKFGQK 207 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh--hhccccccc
Confidence 999999999999987643 33333 457899999999998875 678999999 55554333321 112234567
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEEC-CCcEEEEECCCCCCc
Q 002407 701 RKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASE-DSYVYVWKYEAESRP 778 (927)
Q Consensus 701 ~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~-Dg~I~IWdl~s~~~~ 778 (927)
+.|.+++|+|.....+++++....+-||.-......+..+.+.+.|+.++|.++|+.|.+|.. |-.|..||++....+
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 789999999988878999998888777653333333333456778999999999999999874 778999999875443
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.1e-13 Score=139.39 Aligned_cols=316 Identities=15% Similarity=0.204 Sum_probs=187.6
Q ss_pred CEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCC-CEEEEEECCCcEEEEeCCCCcEEE
Q 002407 569 DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDD-RYFISGSLDAKVRIWSIPERQVVD 644 (927)
Q Consensus 569 ~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg-~~L~sgs~Dg~I~IWDl~t~~~v~ 644 (927)
.|.-|.|..+ -.|.....|+.|.+|++...+-...+. ....+..+.|+| ++ .+|.+...+-.|.+|.+.+.+...
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECC-CcceEeeeecceeEEEEEEeccceeEE
Confidence 3555677766 335566788999999999888777776 778899999999 77 556677778999999999988877
Q ss_pred eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 645 WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
....+..+..++|+|||++.+..+.......+++...+.- .-.+.+...+-..+++.|+|+|. .
T Consensus 129 ~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W------~ll~~f~~dT~DltgieWsPdg~-~--------- 192 (447)
T KOG4497|consen 129 LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW------ILLKEFKLDTIDLTGIEWSPDGN-W--------- 192 (447)
T ss_pred ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH------HHHHhcCCCcccccCceECCCCc-E---------
Confidence 6666777899999999999988876533222222211100 00111234556788999999986 2
Q ss_pred EEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccc------c-------------cccc
Q 002407 725 IRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSR------S-------------KSIT 785 (927)
Q Consensus 725 I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~------~-------------~~~~ 785 (927)
+.|||.--....+. ......+..+.|+|.+++|+.|+.|+.++|-+--+-+.-.. . ....
T Consensus 193 laVwd~~Leykv~a-Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q 271 (447)
T KOG4497|consen 193 LAVWDNVLEYKVYA-YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ 271 (447)
T ss_pred EEEecchhhheeee-eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence 55777432222222 22334577899999999999999999998755433211100 0 0011
Q ss_pred eeeeeeeecCCCeEEEEecCCceeEEeecCCce--eeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccc
Q 002407 786 VTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYL--DEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYF 863 (927)
Q Consensus 786 ~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~ 863 (927)
....+..|.+.+.- +-.|.....++..+...+ ..+......+.|. ..+..++||+|+.|+|+-++.
T Consensus 272 l~~~cLsf~p~~~~-a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk---------~g~g~lafs~Ds~y~aTrnd~-- 339 (447)
T KOG4497|consen 272 LLHHCLSFTPTDLE-AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPK---------CGAGKLAFSCDSTYAATRNDK-- 339 (447)
T ss_pred hcccccccCCCccc-cCccccchhhhhhhhcceeeecccCCCCCCCcc---------cccceeeecCCceEEeeecCC--
Confidence 11222222222221 222322222222221111 1111112222222 233446899999999995521
Q ss_pred cCccccccCchhhcccc--ccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeecCC
Q 002407 864 FDRISATWPEEKLVLTA--RNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNFG 922 (927)
Q Consensus 864 ~d~~v~~W~~e~l~~~~--~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~~g 922 (927)
....+=+|+.+++.... -...|+. +..|.|....||.....-++-+|--.|
T Consensus 340 ~PnalW~Wdlq~l~l~avLiQk~pir--------af~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 340 YPNALWLWDLQNLKLHAVLIQKHPIR--------AFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred CCceEEEEechhhhhhhhhhhcccee--------EEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 23556688887653311 1122332 467888777776665555677776544
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.5e-13 Score=138.34 Aligned_cols=266 Identities=18% Similarity=0.253 Sum_probs=185.3
Q ss_pred eeeEeecCCCCEEEEEEcC-CCCEEEEEeCC-------CcEEEEecCcCcccc-----eeecccccCccccEEEEccCCC
Q 002407 448 KCQEIQAHNGSIWSIKFSL-DGRYLASAGED-------CVIHVWQVVESERKG-----ELLEKQEDGHLNMLLLANGSPE 514 (927)
Q Consensus 448 ~~q~L~gH~~~I~~vafSp-dG~~LaSgs~D-------gtVrVWdv~~~~~~~-----~l~~~~~~~~~~~v~~v~~spd 514 (927)
..+.|..|.+.||.|+-+| +.+.|+|+-.+ ..+-||.+.+..... +............+.++.|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 3466788999999999999 55677776442 247899987654331 1112223345567889999999
Q ss_pred CCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEE
Q 002407 515 PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRL 592 (927)
Q Consensus 515 ~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~l 592 (927)
+..+++-. +..+..+......... ..+ +...-.+|....+.-+|+|. +..+....|++++.
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~v----aev------------~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~ 197 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIV----AEV------------LSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQF 197 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchh----eee------------cccccccccceecccccCCCCccceEEEeCCCcEEE
Confidence 88887764 4444333222211100 000 00011236677888899994 66677778999999
Q ss_pred EeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc-E-EEeccCCCcEEEEEECC-CCCEEEEE
Q 002407 593 WHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-V-VDWNDLHEMVTAACYTP-DGQGALVG 667 (927)
Q Consensus 593 WDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~-~-v~~~~~~~~V~sla~sp-dg~~l~tg 667 (927)
||+++..+...+. |...|..+.|+|+...+|++|+.||.|+|||.+..+ . .....|...|.++-|+| ..++|++|
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEec
Confidence 9999988887776 999999999999667789999999999999998754 3 34566778999999999 45788899
Q ss_pred ECCCeEEEEECCCCeeeeeccc--------------------ccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 668 SYKGSCHLYNTSENKLQQKSPI--------------------NLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 668 s~Dg~I~IwDl~~~~~~~~~~i--------------------~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
+.|..|.+|....-.....++. .........|...|++++|+...+..+++-+.||.+.|
T Consensus 278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 9999999998654221111100 00011234688899999999999988888899999988
Q ss_pred EEC
Q 002407 728 VDG 730 (927)
Q Consensus 728 wD~ 730 (927)
=..
T Consensus 358 s~V 360 (370)
T KOG1007|consen 358 SSV 360 (370)
T ss_pred ecC
Confidence 653
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-11 Score=129.33 Aligned_cols=279 Identities=16% Similarity=0.203 Sum_probs=183.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccc
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~ 535 (927)
...|..+.|..|...|..|+.|| -++|.......... .......|.-+-|+..-..++.......+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~-----~~~~~~~IvEmLFSSSLvaiV~~~qpr~L-------- 70 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS-----KDTEGVSIVEMLFSSSLVAIVSIKQPRKL-------- 70 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc-----ccCCCeEEEEeecccceeEEEecCCCceE--------
Confidence 44677788999999999999997 57777765443111 11122333344444443333332111111
Q ss_pred ccccccccCcccccceEeecCC-CceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe----cCCce
Q 002407 536 INRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS----HSDYV 610 (927)
Q Consensus 536 ~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~----h~~~V 610 (927)
++..... ..++.+. ....|.++.+..+ +|+++-.+. |+|||+.+.+.++++. +...+
T Consensus 71 ---------------kv~~~Kk~~~ICe~~-fpt~IL~VrmNr~-RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl 132 (391)
T KOG2110|consen 71 ---------------KVVHFKKKTTICEIF-FPTSILAVRMNRK-RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGL 132 (391)
T ss_pred ---------------EEEEcccCceEEEEe-cCCceEEEEEccc-eEEEEEccc-EEEEecccceeehhhhccCCCccce
Confidence 1222211 2222222 4567888888654 455555544 9999999999998886 44456
Q ss_pred EEEEEccCCCCEEEEE--ECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCe-EEEEECCCCeeeee
Q 002407 611 TCIQFNPVDDRYFISG--SLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGS-CHLYNTSENKLQQK 686 (927)
Q Consensus 611 ~~v~fsp~dg~~L~sg--s~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~-I~IwDl~~~~~~~~ 686 (927)
.++.+++ .+.+|+-= ...|.|.|||+.+-+.+. +..|++.+.+++|+++|.+||+++..|+ ||+|.+.+++.+.+
T Consensus 133 ~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 133 CALSPNN-ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred EeeccCC-CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 6666666 56677643 235889999999887765 4567789999999999999999999998 79999999998887
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce--------------------------------
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV-------------------------------- 734 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~-------------------------------- 734 (927)
+.- -.....|++++|+|+++ +|.+.+..++|+||.+.+..
T Consensus 212 FRR-------G~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~ 283 (391)
T KOG2110|consen 212 FRR-------GTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSV 283 (391)
T ss_pred eeC-------CceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhh
Confidence 642 12356799999999987 88889999999999721100
Q ss_pred ----EEEEee-cCCcce-EEEEEe--cCCCEEEEEECCCcEEEEECCCC
Q 002407 735 ----HKFKGF-RNTNSQ-ISASLT--ANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 735 ----~~~~~~-~~~~~v-~sv~fs--pdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
+.|... ...... ..+.+. +...++..++.||.++.|.+...
T Consensus 284 ~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 284 LDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred hhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 001000 001111 223333 46788999999999999999763
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.4e-13 Score=147.10 Aligned_cols=188 Identities=16% Similarity=0.302 Sum_probs=143.6
Q ss_pred cCCCceEEEccCCCCEEEEEecCCc-EEEEEeCCCcEEEEeCCCCcEEEEE-ecCCceEEEEEccCCCCEEEEEECCCcE
Q 002407 555 LSDKPICSFQGHLDDVLDLSWSKSQ-HLLSSSMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKV 632 (927)
Q Consensus 555 ~s~k~i~~l~gH~~~V~~l~~spd~-~L~Sgs~DgtV~lWDl~t~~~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I 632 (927)
..++.......|.+.|.+-.|+|++ -|++++.||.|++|.-. |....++ ....+|.|++|.|...+.+++.+ +.+
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~ 168 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHI 168 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecC--CeE
Confidence 3445566678899999999999994 59999999999999854 3332222 36788999999994444444433 456
Q ss_pred EEEeCC-CCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 633 RIWSIP-ERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 633 ~IWDl~-t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
.|=.+. +.++++|..|.+.|.++.|++....+++|+.|-..+|||-....+... ..|..+|++++|.|+
T Consensus 169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S----------~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS----------AAEEYAITSVAFNPE 238 (737)
T ss_pred EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccC----------Chhccceeeeeeccc
Confidence 665554 357789999999999999999999999999999999999875544332 478899999999998
Q ss_pred CCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEE
Q 002407 712 SSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYV 769 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~I 769 (927)
. .++.++.. ++| +. ....+.|..++|++||..+++|+..|.+.+
T Consensus 239 -~-~~~v~S~n-t~R----------~~-~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 239 -K-DYLLWSYN-TAR----------FS-SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred -c-ceeeeeee-eee----------ec-CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 3 45555432 232 22 235678999999999999999999888654
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-13 Score=138.02 Aligned_cols=292 Identities=11% Similarity=0.157 Sum_probs=191.1
Q ss_pred CceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 558 KPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
.|...+++|.+.|+++.|-.+++|++|..-|.|++|++.+...+..+. +...|+.++-.| + ..+.+-+.|..+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEE
Confidence 567788899999999999999999999999999999999998887776 788999999998 4 668899999999999
Q ss_pred eCCCCcEEEeccCCCcEEEEEECC-----CCC----EEEEEECCC-eEEEEECCCCeeeeecccccccccccCCCCCeEE
Q 002407 636 SIPERQVVDWNDLHEMVTAACYTP-----DGQ----GALVGSYKG-SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG 705 (927)
Q Consensus 636 Dl~t~~~v~~~~~~~~V~sla~sp-----dg~----~l~tgs~Dg-~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts 705 (927)
++.....+.... -.++++.|.+ .++ .++.-+... .+++-|..... ++...........+.+++
T Consensus 83 ~ia~s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t-----qv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 83 TIAYSAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-----QVQIADDSERSKLGSVMC 155 (323)
T ss_pred EccCcceEEEee--eeccccccccceeccCCCcchhheecCCcccchhhhhccCccc-----eeEccCchhccccCceee
Confidence 998866554322 2233333332 221 111111100 02222221111 111122222455667777
Q ss_pred EEEcCC-C-CcEEEEEECCCcEEEEECCcce----------EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 706 FQFAPG-S-SSEVLVTSADSRIRVVDGIDLV----------HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 706 l~fspd-g-~~~Llsgs~Dg~I~VwD~~~~~----------~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
..+.-. + ..++++|.++|.+.+||..... .......+..++.++.+.+.-..=++|+.+-.+..|.+.
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLN 235 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeec
Confidence 764332 2 2356777889999999965431 122233456778888888766666777778888888886
Q ss_pred CCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCC
Q 002407 774 AESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNG 853 (927)
Q Consensus 774 s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~ 853 (927)
......... .... +- + .....+..-||++
T Consensus 236 ~s~gslq~~---~e~~------------lk----------------------n--------------pGv~gvrIRpD~K 264 (323)
T KOG0322|consen 236 HSTGSLQIR---KEIT------------LK----------------------N--------------PGVSGVRIRPDGK 264 (323)
T ss_pred cccCccccc---ceEE------------ec----------------------C--------------CCccceEEccCCc
Confidence 542111110 0000 00 0 1111223579999
Q ss_pred eEEEeccccccCccccccCchh---hccccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeecC
Q 002407 854 TISSATNSYFFDRISATWPEEK---LVLTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNF 921 (927)
Q Consensus 854 ~Lasas~~~~~d~~v~~W~~e~---l~~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~~ 921 (927)
.+|+|+ +|+.++++.-.+ +..+..|...+. +++|+|+..++|.|+.|++|-+|.-|
T Consensus 265 IlATAG----WD~RiRVyswrtl~pLAVLkyHsagvn--------~vAfspd~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 265 ILATAG----WDHRIRVYSWRTLNPLAVLKYHSAGVN--------AVAFSPDCELMAAASKDARISLWKLY 323 (323)
T ss_pred EEeecc----cCCcEEEEEeccCCchhhhhhhhccee--------EEEeCCCCchhhhccCCceEEeeecC
Confidence 999999 998888766543 333556665554 57999999999999999999999866
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-13 Score=146.84 Aligned_cols=190 Identities=22% Similarity=0.324 Sum_probs=146.6
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccccccc
Q 002407 460 WSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK 539 (927)
Q Consensus 460 ~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~ 539 (927)
.+|+|+++|..|++|+.||++|||++.....+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l----------------------------------------------- 180 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL----------------------------------------------- 180 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh-----------------------------------------------
Confidence 689999999999999999999999976543221
Q ss_pred ccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceEEEEE
Q 002407 540 SLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQF 615 (927)
Q Consensus 540 ~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~---h~~~V~~v~f 615 (927)
.+..|.+.|.+|.|+|| ..|++-+.| ..+||++.++.++.... .......+.|
T Consensus 181 ----------------------~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF 237 (398)
T KOG0771|consen 181 ----------------------EEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRF 237 (398)
T ss_pred ----------------------hhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhcee
Confidence 23458899999999999 578899999 99999999997766554 3345667778
Q ss_pred ccCCC---CEEEEE--ECCCcEEEEeCCCC------cEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeee
Q 002407 616 NPVDD---RYFISG--SLDAKVRIWSIPER------QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 616 sp~dg---~~L~sg--s~Dg~I~IWDl~t~------~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
+. ++ .+++.+ ..-+.|+.|++... +..+.......|++++.+++|++++.|+.+|.|-||+..+.+..
T Consensus 238 ~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~ 316 (398)
T KOG0771|consen 238 SV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL 316 (398)
T ss_pred cc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeee
Confidence 76 54 333332 33455777665331 22233344568999999999999999999999999999887777
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
+..+ +.|...|+.+.|+|+.. .++..+.+..+.|..
T Consensus 317 ~~vk--------~aH~~~VT~ltF~Pdsr-~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 317 QYVK--------EAHLGFVTGLTFSPDSR-YLASVSSDNEAAVTK 352 (398)
T ss_pred Eeeh--------hhheeeeeeEEEcCCcC-cccccccCCceeEEE
Confidence 6543 68999999999999876 678888888888765
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-12 Score=139.29 Aligned_cols=152 Identities=20% Similarity=0.373 Sum_probs=124.5
Q ss_pred CCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcE------E---EEEe-cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 567 LDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTC------L---KIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 567 ~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~------~---~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
..+|..+.|.++ ++|+||+.|..|+||.+..... + ..+. |...|+++.|+| ++++|++|+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence 457889999887 5899999999999998864322 2 2222 999999999999 9999999999999999
Q ss_pred EeCC--------C-----C---cE-EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccccc
Q 002407 635 WSIP--------E-----R---QV-VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKR 697 (927)
Q Consensus 635 WDl~--------t-----~---~~-v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~ 697 (927)
|... + . .+ .....|...|..++|+|++.++++++.|..+++||+..+++.... .
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~---------~ 162 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL---------D 162 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec---------c
Confidence 9765 2 1 01 123346678999999999999999999999999999999988765 4
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 698 SHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 698 ~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
.|...+..++|.|-++ ++++-+.|...+++.
T Consensus 163 dh~~yvqgvawDpl~q-yv~s~s~dr~~~~~~ 193 (434)
T KOG1009|consen 163 DHEHYVQGVAWDPLNQ-YVASKSSDRHPEGFS 193 (434)
T ss_pred ccccccceeecchhhh-hhhhhccCcccceee
Confidence 8999999999999876 788878887666655
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-11 Score=124.34 Aligned_cols=247 Identities=13% Similarity=0.131 Sum_probs=173.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccc
Q 002407 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (927)
Q Consensus 457 ~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~ 536 (927)
..|.+-+++|.++||+.|..+|.|.|..+.+-..... .
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa------------------~------------------------ 48 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA------------------E------------------------ 48 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc------------------C------------------------
Confidence 3567778999999999999999999998764311000 0
Q ss_pred cccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcE-------EEEE-e-cC
Q 002407 537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTC-------LKIF-S-HS 607 (927)
Q Consensus 537 ~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~-------~~~~-~-h~ 607 (927)
.....++..+++|.++|+.++|+ +.+|++++ ||.|+-|....... .... . |.
T Consensus 49 -----------------~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~ 109 (325)
T KOG0649|consen 49 -----------------PPGKLKIVPEQAHDGPIYYLAFH-DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQV 109 (325)
T ss_pred -----------------CCCCcceeeccccCCCeeeeeee-hhheeecc-CceEEEeeehhhhhhccchhhhhhcCcccc
Confidence 00123455668999999999998 45566655 49999997653221 1111 1 22
Q ss_pred -----CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCC
Q 002407 608 -----DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 608 -----~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~ 681 (927)
..|+++-..| ..+-++.++.|+.++-||+++|++... ..|.+.|.++.--.....+++|+.||++++||++++
T Consensus 110 ~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~ 188 (325)
T KOG0649|consen 110 DAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQ 188 (325)
T ss_pred CcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEecccc
Confidence 4688999999 555566666899999999999998875 456678999888565667999999999999999999
Q ss_pred eeeeecccccccccccCC-CCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecCCcceEEEEEecCCCEE
Q 002407 682 KLQQKSPINLQNKKKRSH-QRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANGRYV 758 (927)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h-~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~L 758 (927)
+.+..+...-.....+.| ...|.+++.+.+ .++++....+.+|+++. ..+.|.. ...+..+.|-. +.+
T Consensus 189 k~v~~ie~yk~~~~lRp~~g~wigala~~ed----WlvCGgGp~lslwhLrsse~t~vfpi---pa~v~~v~F~~--d~v 259 (325)
T KOG0649|consen 189 KHVSMIEPYKNPNLLRPDWGKWIGALAVNED----WLVCGGGPKLSLWHLRSSESTCVFPI---PARVHLVDFVD--DCV 259 (325)
T ss_pred ceeEEeccccChhhcCcccCceeEEEeccCc----eEEecCCCceeEEeccCCCceEEEec---ccceeEeeeec--ceE
Confidence 988876543332222333 345777776653 44556667899999654 4444443 34566677754 468
Q ss_pred EEEECCCcEEEEECCC
Q 002407 759 VSASEDSYVYVWKYEA 774 (927)
Q Consensus 759 asgs~Dg~I~IWdl~s 774 (927)
++++....|.-|.+..
T Consensus 260 l~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 260 LIGGEGNHVQSYTLNG 275 (325)
T ss_pred EEeccccceeeeeecc
Confidence 8888888899998864
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.7e-12 Score=139.93 Aligned_cols=286 Identities=17% Similarity=0.156 Sum_probs=198.2
Q ss_pred eeEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~L-aSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
+|.| .|...-+.|..+|||+|| |||-.--.|++||+.+.....+- .-....|.+.-.+.|-..++....+..|
T Consensus 45 iQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER-----hlDae~V~feiLsDD~SK~v~L~~DR~I 118 (703)
T KOG2321|consen 45 IQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER-----HLDAEVVDFEILSDDYSKSVFLQNDRTI 118 (703)
T ss_pred HHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee-----cccccceeEEEeccchhhheEeecCcee
Confidence 3443 488889999999999986 56667889999999876544331 1112233333334443333333333333
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC-CcEEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-SQHLLSSSMDKTVRLWHLSSKTCLKIFS- 605 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp-d~~L~Sgs~DgtV~lWDl~t~~~~~~~~- 605 (927)
.+......- ..++ -...-.+|+++. .--|+.++....|+-++++.|..+..|.
T Consensus 119 efHak~G~h------------------------y~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~ 173 (703)
T KOG2321|consen 119 EFHAKYGRH------------------------YRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET 173 (703)
T ss_pred eehhhcCee------------------------eeee-cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc
Confidence 322211100 0000 111224455553 3346666666789999999999999988
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC-------C-----cEEEEEECCCCCEEEEEECCCeE
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH-------E-----MVTAACYTPDGQGALVGSYKGSC 673 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~-------~-----~V~sla~spdg~~l~tgs~Dg~I 673 (927)
....+++|..++ ...+|++|+.+|.|-.||.++...+..+... . .|+++.|+.+|-.+++|+.+|.+
T Consensus 174 ~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v 252 (703)
T KOG2321|consen 174 DSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSV 252 (703)
T ss_pred ccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcE
Confidence 558999999999 7778999999999999999987665433322 2 49999999999999999999999
Q ss_pred EEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEec
Q 002407 674 HLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTA 753 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fsp 753 (927)
.|||++..+.+.... .....+|..+.|.+.+..-.+++.....++|||-.+... +........+..+|+-|
T Consensus 253 ~iyDLRa~~pl~~kd--------h~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~-~asiEpt~~lND~C~~p 323 (703)
T KOG2321|consen 253 LIYDLRASKPLLVKD--------HGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP-MASIEPTSDLNDFCFVP 323 (703)
T ss_pred EEEEcccCCceeecc--------cCCccceeeecccccCCCceEEecchHHhhhcccccCCc-eeeccccCCcCceeeec
Confidence 999999988765532 345567899999887554566677778899999543322 22333456688899999
Q ss_pred CCCEEEEEECCCcEEEEECCCC
Q 002407 754 NGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 754 dg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
++-+++++-+++.+..|=+..-
T Consensus 324 ~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 324 GSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CCceEEEecCCCcceeEEcccc
Confidence 9999999999998888877653
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.3e-12 Score=131.05 Aligned_cols=248 Identities=17% Similarity=0.266 Sum_probs=178.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~ 534 (927)
-..+|+|.+|++|+..+|.+-....|.||.....+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-------------------------------------------- 44 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-------------------------------------------- 44 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------------------------------------
Confidence 357899999999999999999999999998643320
Q ss_pred cccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeC-CCCcE---EEEEecCCc
Q 002407 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL-SSKTC---LKIFSHSDY 609 (927)
Q Consensus 535 ~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl-~t~~~---~~~~~h~~~ 609 (927)
-++.+++..|...|+.++|.|. ++|++++.|..-+||.. ..++- +..+.+...
T Consensus 45 ----------------------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrA 102 (361)
T KOG1523|consen 45 ----------------------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRA 102 (361)
T ss_pred ----------------------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccc
Confidence 1456678889999999999998 89999999999999998 44332 334459999
Q ss_pred eEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE-----EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeee
Q 002407 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-----DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 610 V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v-----~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
+++|.|+| .++.|++|+.-..|.||-++...-- -...+...|+++.|+|++-+|++|+.|+.+++|..--....
T Consensus 103 At~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vd 181 (361)
T KOG1523|consen 103 ATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVD 181 (361)
T ss_pred eeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccc
Confidence 99999999 9999999999999999987665421 12334578999999999999999999999999975321111
Q ss_pred ee---------cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceE-EEEeecCCcceEEEEEecC
Q 002407 685 QK---------SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH-KFKGFRNTNSQISASLTAN 754 (927)
Q Consensus 685 ~~---------~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~-~~~~~~~~~~v~sv~fspd 754 (927)
.. +++...........+.|..+.|+|+|. .|+-.+.|+.+.+-|.....+ .........+..++.|-.+
T Consensus 182 ekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 182 EKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred cCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence 10 011000111125667899999999987 799999999999998543321 1111112245566666544
Q ss_pred CCEEEEEECCCcEEEEE
Q 002407 755 GRYVVSASEDSYVYVWK 771 (927)
Q Consensus 755 g~~Lasgs~Dg~I~IWd 771 (927)
. .++.++.|..=.++.
T Consensus 261 ~-~vv~ag~~c~P~lf~ 276 (361)
T KOG1523|consen 261 N-SVVAAGYDCGPVLFV 276 (361)
T ss_pred C-ceeecCCCCCceEEE
Confidence 3 455555664444443
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-11 Score=128.20 Aligned_cols=285 Identities=16% Similarity=0.230 Sum_probs=184.4
Q ss_pred EEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCcCcccceeecccccCc
Q 002407 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (927)
Q Consensus 424 ~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpd-G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~ 502 (927)
++.+..+..|++|+++++....+. ..-...|+||+|-|. ++-|+.|+.. -|.||.....-.......
T Consensus 113 fava~nddvVriy~ksst~pt~Lk-----s~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~------ 180 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSSTCPTKLK-----SVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIR------ 180 (445)
T ss_pred hhhhccCcEEEEeccCCCCCceec-----chhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccc------
Confidence 466788889999999986554443 234567999999995 4577777754 599998753221111000
Q ss_pred cccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEE
Q 002407 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHL 581 (927)
Q Consensus 503 ~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L 581 (927)
........+....|| ..|+.|.|.+| ..|
T Consensus 181 -------------------------------------------------~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l 210 (445)
T KOG2139|consen 181 -------------------------------------------------MMSTHHLQVLQDPGH-NPVTSMQWNEDGTIL 210 (445)
T ss_pred -------------------------------------------------cccccchhheeCCCC-ceeeEEEEcCCCCEE
Confidence 000001122334466 78999999999 567
Q ss_pred EEEeC-CCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeC-CCCcEEEeccCCCcEEEEEEC
Q 002407 582 LSSSM-DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI-PERQVVDWNDLHEMVTAACYT 658 (927)
Q Consensus 582 ~Sgs~-DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl-~t~~~v~~~~~~~~V~sla~s 658 (927)
++++. |..|.|||+.++.++.... ..+.++-+.|+| |+.+|+++..|+..++|.. ++-....+.-..+.|...+|+
T Consensus 211 ~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWs 289 (445)
T KOG2139|consen 211 VTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWS 289 (445)
T ss_pred eecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeeeeec
Confidence 77775 5679999999998887764 667889999999 9999999999999999954 444555677777899999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCe--e---------eeeccccccccc----ccCCCCCeEEEEEcCCCCcEEEEEECC-
Q 002407 659 PDGQGALVGSYKGSCHLYNTSENK--L---------QQKSPINLQNKK----KRSHQRKITGFQFAPGSSSEVLVTSAD- 722 (927)
Q Consensus 659 pdg~~l~tgs~Dg~I~IwDl~~~~--~---------~~~~~i~~~~~~----~~~h~~~Vtsl~fspdg~~~Llsgs~D- 722 (927)
|+|.+|+.... |.-++|.+.-.. . ......+++... ..-..+.+.+++|.|.|. +|++.-..
T Consensus 290 pcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe-yLav~fKg~ 367 (445)
T KOG2139|consen 290 PCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE-YLAVIFKGQ 367 (445)
T ss_pred CCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC-EEEEEEcCC
Confidence 99998777653 334445432110 0 000111111100 122356789999999998 56665443
Q ss_pred -------CcEEEEECCcce---EEEEeecCCcceEEEEEec---CCCEEEEEECCCcEEEEECC
Q 002407 723 -------SRIRVVDGIDLV---HKFKGFRNTNSQISASLTA---NGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 723 -------g~I~VwD~~~~~---~~~~~~~~~~~v~sv~fsp---dg~~Lasgs~Dg~I~IWdl~ 773 (927)
..|.+||.+... ..+-+.........++|+| ++.+|..+=..|.|.-|.+.
T Consensus 368 ~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 368 SFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred chhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 236667754321 1112222222334456665 56777777778888877764
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.6e-12 Score=144.80 Aligned_cols=230 Identities=14% Similarity=0.110 Sum_probs=152.6
Q ss_pred ceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCcCcccceeecccccCccccE
Q 002407 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNML 506 (927)
Q Consensus 430 ~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~D---gtVrVWdv~~~~~~~~l~~~~~~~~~~~v 506 (927)
+..|++|+...... +.+..|...|..++|||||++||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-------------- 242 (429)
T PRK01742 183 PYEVRVADYDGFNQ------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-------------- 242 (429)
T ss_pred eEEEEEECCCCCCc------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE--------------
Confidence 35778887654332 4456788899999999999999988754 369999986653110
Q ss_pred EEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEE-
Q 002407 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSS- 584 (927)
Q Consensus 507 ~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sg- 584 (927)
+..+.+|. ..++|+|+ .+|+.+
T Consensus 243 -----------------------------------------------------l~~~~g~~---~~~~wSPDG~~La~~~ 266 (429)
T PRK01742 243 -----------------------------------------------------VASFRGHN---GAPAFSPDGSRLAFAS 266 (429)
T ss_pred -----------------------------------------------------EecCCCcc---CceeECCCCCEEEEEE
Confidence 11122232 25789999 456655
Q ss_pred eCCCcEEE--EeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEE-CCCcEEEEeCCC--CcEEEeccCCCcEEEEEECC
Q 002407 585 SMDKTVRL--WHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPE--RQVVDWNDLHEMVTAACYTP 659 (927)
Q Consensus 585 s~DgtV~l--WDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~t--~~~v~~~~~~~~V~sla~sp 659 (927)
+.++.+.| ||+.+++......+...+..+.|+| +++.|+..+ .++...||++.. +.. ....+.. ..+.|+|
T Consensus 267 ~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l~~~~--~~~~~Sp 342 (429)
T PRK01742 267 SKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGA-SLVGGRG--YSAQISA 342 (429)
T ss_pred ecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCe-EEecCCC--CCccCCC
Confidence 46776554 5777777655555777788999999 888776555 578888887643 332 2223332 4578999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC----CcceE
Q 002407 660 DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG----IDLVH 735 (927)
Q Consensus 660 dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~----~~~~~ 735 (927)
||++|+..+.++ +.+||+.++....... . .....+.|+|++. +|+.++.++.+.+|+. .....
T Consensus 343 DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~---------~--~~~~~~~~sPdG~-~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 343 DGKTLVMINGDN-VVKQDLTSGSTEVLSS---------T--FLDESPSISPNGI-MIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred CCCEEEEEcCCC-EEEEECCCCCeEEecC---------C--CCCCCceECCCCC-EEEEEEcCCCceEEEEEECCCCceE
Confidence 999998887755 5569998876543211 1 1234578999987 7888888888887763 23344
Q ss_pred EEEeecCCcceEEEEEecC
Q 002407 736 KFKGFRNTNSQISASLTAN 754 (927)
Q Consensus 736 ~~~~~~~~~~v~sv~fspd 754 (927)
.+.. +...+...+|+|-
T Consensus 410 ~l~~--~~g~~~~p~wsp~ 426 (429)
T PRK01742 410 RLPG--SDGQVKFPAWSPY 426 (429)
T ss_pred EccC--CCCCCCCcccCCC
Confidence 4433 3455667788873
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.1e-12 Score=130.68 Aligned_cols=203 Identities=21% Similarity=0.293 Sum_probs=151.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcc-cceeecccccCccccEEEEccCC--CCCeecccccCCceeee
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER-KGELLEKQEDGHLNMLLLANGSP--EPTSLSPKHLDNHLEKK 530 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~-~~~l~~~~~~~~~~~v~~v~~sp--d~~~la~~~~~~~i~~~ 530 (927)
.|-+.|.||.|.|++..||+-. |..|.+|++.++.. ..++.......+....+.-+|+| ++..+++..... +..+
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~t-l~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDST-LQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCc-EEEE
Confidence 5667999999999999999886 88999999998876 55555444455667778888998 577776654433 2111
Q ss_pred cccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCC-CcEEEEEe-c
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSS-KTCLKIFS-H 606 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t-~~~~~~~~-h 606 (927)
.... ..+....-..|...|..+.|.|+ ..|++|+.||.|+|||.+. ..+++.+. |
T Consensus 199 D~RT---------------------~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H 257 (370)
T KOG1007|consen 199 DLRT---------------------MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH 257 (370)
T ss_pred Eccc---------------------hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC
Confidence 1100 01122233568889999999998 5699999999999999985 45666665 9
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCC------------------------------CcEEEeccCCCcEEEEE
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE------------------------------RQVVDWNDLHEMVTAAC 656 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t------------------------------~~~v~~~~~~~~V~sla 656 (927)
...|+++.|+|..+.+|++++.|..|.+|.... +.+..+..|++.|.+++
T Consensus 258 sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~a 337 (370)
T KOG1007|consen 258 SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALA 337 (370)
T ss_pred ceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEe
Confidence 999999999998899999999999999997521 12223456778999999
Q ss_pred ECCCCCE-EEEEECCCeEEEEECC
Q 002407 657 YTPDGQG-ALVGSYKGSCHLYNTS 679 (927)
Q Consensus 657 ~spdg~~-l~tgs~Dg~I~IwDl~ 679 (927)
|+.-..+ |++-+.||.+.|=.+.
T Consensus 338 WSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 338 WSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eccCCCeeEEEeccCceEEeecCC
Confidence 9986554 6667899998876543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=143.12 Aligned_cols=205 Identities=22% Similarity=0.282 Sum_probs=148.3
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCc
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~ 502 (927)
.++..+.+|++.+.++..+ . .+.+.+|.+.|.|-.|+|||.-|+|+|+||.|++|.-... ...+ ....
T Consensus 77 ~~~i~s~DGkf~il~k~~r-V-----E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-LRSt-----l~Q~ 144 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSAR-V-----ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-LRST-----VVQN 144 (737)
T ss_pred eEEEEcCCceEEEecccch-h-----hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-HHHH-----Hhhc
Confidence 3455567778887775433 1 2445799999999999999999999999999999984321 1111 1234
Q ss_pred cccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEE
Q 002407 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHL 581 (927)
Q Consensus 503 ~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L 581 (927)
...|.+++|.|+...+..+..+... .+... ....+...+.|.+-|.++.|++. +.+
T Consensus 145 ~~~v~c~~W~p~S~~vl~c~g~h~~-IKpL~----------------------~n~k~i~WkAHDGiiL~~~W~~~s~lI 201 (737)
T KOG1524|consen 145 EESIRCARWAPNSNSIVFCQGGHIS-IKPLA----------------------ANSKIIRWRAHDGLVLSLSWSTQSNII 201 (737)
T ss_pred CceeEEEEECCCCCceEEecCCeEE-Eeecc----------------------cccceeEEeccCcEEEEeecCccccce
Confidence 4678999999997766665333322 11110 11234467899999999999998 889
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCC
Q 002407 582 LSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDG 661 (927)
Q Consensus 582 ~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg 661 (927)
++|+.|-..+|||-........-.|..+|++++|+| + ..++.++. .++++ .....+.|..++|++||
T Consensus 202 ~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~np-d-~~~~v~S~-nt~R~----------~~p~~GSifnlsWS~DG 268 (737)
T KOG1524|consen 202 ASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNP-E-KDYLLWSY-NTARF----------SSPRVGSIFNLSWSADG 268 (737)
T ss_pred eecCCceeEEeecccCcccccCChhccceeeeeecc-c-cceeeeee-eeeee----------cCCCccceEEEEEcCCC
Confidence 999999999999976544444445999999999999 6 55665554 34441 11223678999999999
Q ss_pred CEEEEEECCCeEEE
Q 002407 662 QGALVGSYKGSCHL 675 (927)
Q Consensus 662 ~~l~tgs~Dg~I~I 675 (927)
..+++|+..|.+.+
T Consensus 269 TQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 269 TQATCGTSTGQLIV 282 (737)
T ss_pred ceeeccccCceEEE
Confidence 99999999998655
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-11 Score=141.48 Aligned_cols=270 Identities=16% Similarity=0.194 Sum_probs=183.0
Q ss_pred CcEEEEeCCCC-cEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE-------EEeccCCCcEEEEEECC
Q 002407 588 KTVRLWHLSSK-TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-------VDWNDLHEMVTAACYTP 659 (927)
Q Consensus 588 gtV~lWDl~t~-~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~-------v~~~~~~~~V~sla~sp 659 (927)
+.+.||++... .+...+.-...|+|+.|+|.+.++++.|+.+|.|.+||++.+.. .....|...++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 37999999877 66667778899999999999999999999999999999987654 12445668999999977
Q ss_pred CCCE--EEEEECCCeEEEEECCCCeeeeec-cccccc--ccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC---C
Q 002407 660 DGQG--ALVGSYKGSCHLYNTSENKLQQKS-PINLQN--KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG---I 731 (927)
Q Consensus 660 dg~~--l~tgs~Dg~I~IwDl~~~~~~~~~-~i~~~~--~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~---~ 731 (927)
+..- |++++.||.|..|+++.-...... ...... .........++++.|.+..++.+++|+.+|.|..-+. .
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 5444 999999999999988765442221 111111 1112345578999999999999999999999988441 1
Q ss_pred cce-EEEE----eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCC
Q 002407 732 DLV-HKFK----GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPG 806 (927)
Q Consensus 732 ~~~-~~~~----~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g 806 (927)
... ..++ ...+.++|..+.++|=+..++..+.|.+|+||.......|...- ....+..
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~----------~~~~~~v------- 444 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL----------DSSPDYV------- 444 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh----------hhcccee-------
Confidence 111 1122 23467889999999988766666669999999987422221100 0000001
Q ss_pred ceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccccccCCCc
Q 002407 807 VGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTARNRSPR 886 (927)
Q Consensus 807 ~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~~~~~s~v 886 (927)
+.++|||---.++... ..++.+.+|+... .+..|+
T Consensus 445 -------------------------------------~~vaWSptrpavF~~~---d~~G~l~iWDLl~-----~~~~Pv 479 (555)
T KOG1587|consen 445 -------------------------------------TDVAWSPTRPAVFATV---DGDGNLDIWDLLQ-----DDEEPV 479 (555)
T ss_pred -------------------------------------eeeEEcCcCceEEEEE---cCCCceehhhhhc-----cccCCc
Confidence 1123555443333332 2567888898642 233444
Q ss_pred eecccCCCC--CcccCCCCCEEEEEcCCCcEEEee
Q 002407 887 TSLDISNGI--SSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 887 ~s~~~~~~~--~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
....++... ...|++.|++|+.|+..|+|.+|.
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 444333111 478888999999999999999998
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-11 Score=134.32 Aligned_cols=198 Identities=19% Similarity=0.260 Sum_probs=151.7
Q ss_pred EEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEE-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-
Q 002407 571 LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND- 647 (927)
Q Consensus 571 ~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~- 647 (927)
..++|+.+ ..|++++.||++|||+......+... .|...|.++.|+| |+++|++-+.| ..+||++.++..+.+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 67899998 88999999999999997766655544 4999999999999 99999999999 99999999997666544
Q ss_pred --CCCcEEEEEECCCC---CEEEE--EECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 648 --LHEMVTAACYTPDG---QGALV--GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 648 --~~~~V~sla~spdg---~~l~t--gs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
.+.....+-|+.|+ .+++. ...-+.|+.|++.....-.. ++.+++......|++++.+++|+ +++.|+
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~----l~~~~~~~~~~siSsl~VS~dGk-f~AlGT 300 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNF----LRLRKKIKRFKSISSLAVSDDGK-FLALGT 300 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccc----cchhhhhhccCcceeEEEcCCCc-EEEEec
Confidence 23466777787776 33332 33345677777654322111 11122234456899999999998 899999
Q ss_pred CCCcEEEEECCcceEEE-EeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 721 ADSRIRVVDGIDLVHKF-KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 721 ~Dg~I~VwD~~~~~~~~-~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
.||.|.|++..++...+ ..+.|...|+.+.|+||.+++++.+.|..+.|..+.-.
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 99999999977655433 33456778999999999999999999999999988763
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-11 Score=127.81 Aligned_cols=206 Identities=16% Similarity=0.246 Sum_probs=164.1
Q ss_pred EEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc---EEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEe
Q 002407 562 SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT---CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWS 636 (927)
Q Consensus 562 ~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~---~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWD 636 (927)
.|.--..+|+|.+|+++ ..++.+.....|.||.....+ ..+++. |...|++|.|+| ..+.|++|+.|..-++|.
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccc
Confidence 34445678999999999 678888888999999987665 455665 999999999999 888999999999999999
Q ss_pred CCC-Cc---EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC
Q 002407 637 IPE-RQ---VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 637 l~t-~~---~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
... ++ .+.++.++...+++.|+|.++.|++|+....|.||-++...--. +....++.+...|+++.|+|++
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW-----VsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW-----VSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccccee-----hhhhhCCccccceeeeeccCCc
Confidence 843 32 34567788899999999999999999999999998776543221 1122235677889999999976
Q ss_pred CcEEEEEECCCcEEEEECC--------------------cceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 713 SSEVLVTSADSRIRVVDGI--------------------DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 713 ~~~Llsgs~Dg~I~VwD~~--------------------~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
- +|++|+.|+..|||... .+...+. ...+.+..+.|+|+|..|+-.+.|+.+.+=|.
T Consensus 159 V-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 159 V-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred c-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 4 88889999999999710 1111111 34678899999999999999999999999998
Q ss_pred CCCC
Q 002407 773 EAES 776 (927)
Q Consensus 773 ~s~~ 776 (927)
....
T Consensus 236 ~~p~ 239 (361)
T KOG1523|consen 236 AGPS 239 (361)
T ss_pred CCCc
Confidence 8764
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-10 Score=124.92 Aligned_cols=193 Identities=15% Similarity=0.208 Sum_probs=149.1
Q ss_pred CEEEEEecCCcEEEEEeCC--CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec
Q 002407 569 DVLDLSWSKSQHLLSSSMD--KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN 646 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~D--gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~ 646 (927)
.|..+-|+. .+++..+.+ ..+++.++..+..+..+.....|.+|.++ .+.|+++-.+ .|+|||+++.+++..+
T Consensus 48 ~IvEmLFSS-SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN---r~RLvV~Lee-~IyIydI~~MklLhTI 122 (391)
T KOG2110|consen 48 SIVEMLFSS-SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMN---RKRLVVCLEE-SIYIYDIKDMKLLHTI 122 (391)
T ss_pred EEEEeeccc-ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEc---cceEEEEEcc-cEEEEecccceeehhh
Confidence 344555554 344444444 45999999999999888889999999995 4567666654 4999999999988644
Q ss_pred c----CCCcEEEEEECCCCCEEEEEE--CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 647 D----LHEMVTAACYTPDGQGALVGS--YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 647 ~----~~~~V~sla~spdg~~l~tgs--~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
. ....+.++++++.+.+++.-+ ..|.|.|||+.+-+....+ ..|.+.+.+++|+++|. +|++++
T Consensus 123 ~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I---------~aH~~~lAalafs~~G~-llATAS 192 (391)
T KOG2110|consen 123 ETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI---------NAHKGPLAALAFSPDGT-LLATAS 192 (391)
T ss_pred hccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE---------EecCCceeEEEECCCCC-EEEEec
Confidence 3 334577777777777888743 3688999999987777665 48999999999999997 899999
Q ss_pred CCCc-EEEEECCcceEEEEeec--CCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 721 ADSR-IRVVDGIDLVHKFKGFR--NTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 721 ~Dg~-I~VwD~~~~~~~~~~~~--~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
..|+ ||||...+....+.... ....|.+++|++++++|++.+..++|+||.++...
T Consensus 193 eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 193 EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 9887 78999655444444332 34567899999999999999999999999998754
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-11 Score=142.27 Aligned_cols=288 Identities=16% Similarity=0.204 Sum_probs=197.8
Q ss_pred CCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceEEEEEcc-CCCCEEEEEECCCcEEEEeC-CC-
Q 002407 568 DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS----HSDYVTCIQFNP-VDDRYFISGSLDAKVRIWSI-PE- 639 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~----h~~~V~~v~fsp-~dg~~L~sgs~Dg~I~IWDl-~t- 639 (927)
..-..+.|+|= ..++++...-.|+|||.+.++++..|. ....|+.+.+-. .|..++++|+.||.|+||+- .+
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 34556777775 678888878899999999999988886 345788888753 35678999999999999963 22
Q ss_pred ---CcEEE-eccCC-------CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE
Q 002407 640 ---RQVVD-WNDLH-------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 640 ---~~~v~-~~~~~-------~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
.+++. +.... +.-.-+.|.....+|++++.-..|+|||.........+.. +...-|+++.-
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~--------~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY--------GSSTLVTALSA 1216 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc--------CCCccceeecc
Confidence 23332 22222 1124456777667777777788999999998887776653 45566787776
Q ss_pred cCCCCcEEEEEECCCcEEEEECC-----cceEEEEeecCCcceEEEEEecCCCE-EEEEECCCcEEEEECCCCCCccccc
Q 002407 709 APGSSSEVLVTSADSRIRVVDGI-----DLVHKFKGFRNTNSQISASLTANGRY-VVSASEDSYVYVWKYEAESRPSRSK 782 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~VwD~~-----~~~~~~~~~~~~~~v~sv~fspdg~~-Lasgs~Dg~I~IWdl~s~~~~~~~~ 782 (927)
.....++|++|..||.|++||.+ ..+..++.|....+|..+.+-+.|-- |++|+.||.|++||++.........
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce
Confidence 55555599999999999999943 35677777766666999999987755 9999999999999999853222111
Q ss_pred cc-----ceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEE
Q 002407 783 SI-----TVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISS 857 (927)
Q Consensus 783 ~~-----~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Las 857 (927)
-. ....+....|...-++|....+...+|+..+.++..+....+-.. ........++|.|.--+||.
T Consensus 1297 iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~--------q~~gs~scL~FHP~~~llAa 1368 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMG--------QRIGSVSCLAFHPHRLLLAA 1368 (1387)
T ss_pred eeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCccccc--------CcCCCcceeeecchhHhhhh
Confidence 11 111334445555555555544778999999888777653211100 01122245679998877777
Q ss_pred eccccccCccccccCchh
Q 002407 858 ATNSYFFDRISATWPEEK 875 (927)
Q Consensus 858 as~~~~~d~~v~~W~~e~ 875 (927)
+. .|..+.++..++
T Consensus 1369 G~----~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1369 GS----ADSTVSIYSCEK 1382 (1387)
T ss_pred cc----CCceEEEeecCC
Confidence 64 666677666543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-11 Score=141.54 Aligned_cols=206 Identities=17% Similarity=0.140 Sum_probs=141.9
Q ss_pred eEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEE
Q 002407 551 TVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISG 626 (927)
Q Consensus 551 ~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~D---gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sg 626 (927)
.+++..+.....+..|...+..+.|+|+ .+|+.++.+ ..|++||+.+++.............++|+| +++.|+.+
T Consensus 187 ~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~ 265 (429)
T PRK01742 187 RVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFA 265 (429)
T ss_pred EEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEE
Confidence 4455566666777888889999999999 567776654 369999999886544433334455789999 99888776
Q ss_pred E-CCCcEEE--EeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCCCeeeeecccccccccccCCCCC
Q 002407 627 S-LDAKVRI--WSIPERQVVDWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (927)
Q Consensus 627 s-~Dg~I~I--WDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (927)
. .+|.+.| ||+.+++......+...+..+.|+|||+.|+..+ .++...||++......... ..+..
T Consensus 266 ~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~---------l~~~~- 335 (429)
T PRK01742 266 SSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL---------VGGRG- 335 (429)
T ss_pred EecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE---------ecCCC-
Confidence 4 6776555 5777777777666667788999999999877665 5678888876532211111 01112
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEEEEECCcceE-EEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 703 ITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH-KFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 703 Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~-~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
....|+|++. .|+..+.+ .+.+||...... .+... .....+.|+|||++|+.++.++.+.+|.+.
T Consensus 336 -~~~~~SpDG~-~ia~~~~~-~i~~~Dl~~g~~~~lt~~---~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 336 -YSAQISADGK-TLVMINGD-NVVKQDLTSGSTEVLSST---FLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred -CCccCCCCCC-EEEEEcCC-CEEEEECCCCCeEEecCC---CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 3568999988 56666555 466688654322 22111 123467899999999999999998888764
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-12 Score=139.58 Aligned_cols=309 Identities=16% Similarity=0.177 Sum_probs=214.7
Q ss_pred CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCC-CCEEEEEECCCcEE
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVD-DRYFISGSLDAKVR 633 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~d-g~~L~sgs~Dg~I~ 633 (927)
.....|.+|.+.|..+.|... ..|++++.|..|.+||...+.....|. |...|....|-|.. ...|++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 344567899999999999887 779999999999999999998887775 88888888898853 45689999999999
Q ss_pred EEeCCCCcE----EEeccCCCcEEEEEECCCCC-EEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE
Q 002407 634 IWSIPERQV----VDWNDLHEMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 634 IWDl~t~~~----v~~~~~~~~V~sla~spdg~-~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
+=.+..... .....|++.|..++.-|+.. -|.+++.|+.+.-+|++.......+.- . .......-..+.++.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c--r-~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC--R-EADEKERVGLYTIAV 289 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee--e-ccCCccceeeeeEec
Confidence 987654322 24667889999999999664 588899999999999988765544331 1 001111236788999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCcceE--------EEEee----cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 709 APGSSSEVLVTSADSRIRVVDGIDLVH--------KFKGF----RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~VwD~~~~~~--------~~~~~----~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
.|.+.+.+++++.|..+++||.+.... ++..+ .....|++++|+.++.-|.++-.|-.||+|.-.-+.
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence 999888999999999999999543221 11111 345678999999888777777778889999433221
Q ss_pred C--cccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCccee-eecCCCC
Q 002407 777 R--PSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGY-TNSPLNG 853 (927)
Q Consensus 777 ~--~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~fSPdg~ 853 (927)
. |...... .. +.. .+ ..+|... ..+..+ =|-|...
T Consensus 370 G~~p~~~s~~---~~---~~k-------------~v-------------YKGHrN~----------~TVKgVNFfGPrsE 407 (559)
T KOG1334|consen 370 GSEPDPSSPR---EQ---YVK-------------RV-------------YKGHRNS----------RTVKGVNFFGPRSE 407 (559)
T ss_pred CCCCCCCcch---hh---ccc-------------hh-------------hcccccc----------cccceeeeccCccc
Confidence 1 1111000 00 000 00 0111110 001111 2678999
Q ss_pred eEEEeccccccCccccccCchhhccccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 854 TISSATNSYFFDRISATWPEEKLVLTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 854 ~Lasas~~~~~d~~v~~W~~e~l~~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
|+.+++ ..+.|.+|.....++..........+ .|+-.+|+-.+|||.|.|-.||||--
T Consensus 408 yVvSGS----DCGhIFiW~K~t~eii~~MegDr~VV-----NCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 408 YVVSGS----DCGHIFIWDKKTGEIIRFMEGDRHVV-----NCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred eEEecC----ccceEEEEecchhHHHHHhhcccceE-----eccCCCCCCchhhccCCccceeeecC
Confidence 999986 67889999876544444333333322 16889999999999999999999974
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-12 Score=140.69 Aligned_cols=264 Identities=9% Similarity=0.091 Sum_probs=205.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccccc
Q 002407 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (927)
Q Consensus 458 ~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~ 537 (927)
.-..+.|+.+|++|+.|+.-|.|-.+|+.++....++. ....|..+.|.....++|++.....
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~------v~Etv~Dv~~LHneq~~AVAQK~y~----------- 193 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN------VMETVRDVTFLHNEQFFAVAQKKYV----------- 193 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee------hhhhhhhhhhhcchHHHHhhhhceE-----------
Confidence 34578999999999999999999999999998877763 2234555666666666666533221
Q ss_pred ccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcE-EEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEE
Q 002407 538 RKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQH-LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQF 615 (927)
Q Consensus 538 ~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~-L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~f 615 (927)
.+++-.+..++.++.| ..|..|.|.|-.+ |++++..|.++.-|+.+|+.+..+. ..+.+..+.-
T Consensus 194 -------------yvYD~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q 259 (545)
T KOG1272|consen 194 -------------YVYDNNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ 259 (545)
T ss_pred -------------EEecCCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence 4566667777777765 4688999999854 6778889999999999999988776 6778888999
Q ss_pred ccCCCCEEEEEECCCcEEEEeCCCCcEE-EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccc
Q 002407 616 NPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK 694 (927)
Q Consensus 616 sp~dg~~L~sgs~Dg~I~IWDl~t~~~v-~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~ 694 (927)
+| -+-.+-+|...|+|.+|.....+.+ .++.|.+.|.++++.++|.|+++.+.|..|+|||++....+....
T Consensus 260 NP-~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~------ 332 (545)
T KOG1272|consen 260 NP-YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR------ 332 (545)
T ss_pred CC-ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee------
Confidence 99 7778889999999999998877654 578889999999999999999999999999999999877555432
Q ss_pred cccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC-----CcceEEEEeecCCcceEEEEEecCCCEEEEEECCCc
Q 002407 695 KKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG-----IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 695 ~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~-----~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
.......++|+..| +++.+....|.||.. ......+..|.....|..+.|.|-...|-.|...|-
T Consensus 333 ----tp~~a~~ls~Sqkg---lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 333 ----TPHPASNLSLSQKG---LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred ----cCCCcccccccccc---ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 13456677888764 677777788999961 234455556666778999999997777666655553
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-12 Score=148.94 Aligned_cols=269 Identities=20% Similarity=0.219 Sum_probs=194.1
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecC
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK 577 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~sp 577 (927)
..+|.+.|.|+.+...+.+++++.++..+ ++|.. +..++....||.+.|++++.+.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lv-----------------------KiwS~et~~~lAs~rGhs~ditdlavs~ 242 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLV-----------------------KIWSMETARCLASCRGHSGDITDLAVSS 242 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCcccee-----------------------eeeeccchhhhccCCCCccccchhccch
Confidence 35888999999999999999999888766 33433 4567788999999999999988
Q ss_pred C-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-----eccCCC
Q 002407 578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-----WNDLHE 650 (927)
Q Consensus 578 d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-----~~~~~~ 650 (927)
+ -++++++.|..|++|.+.++.++.++. |++.|++|+|+| +.+.+.||++++||.+-...+. .+....
T Consensus 243 ~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~ 317 (1113)
T KOG0644|consen 243 NNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKD 317 (1113)
T ss_pred hhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCc-----cccCCCCCceEeccccccccccCCCCCCccccc
Confidence 7 568999999999999999999998776 999999999999 4478899999999988222111 122335
Q ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
.+.++.|...+..+++++.|+.-..|.+.... .+...+.-+.++.+-....+++-.+-.+.+|+.
T Consensus 318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl 382 (1113)
T KOG0644|consen 318 LVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNL 382 (1113)
T ss_pred ceeeeeccccccccccccCCcccccchhhHhh---------------hhccceEEEeccccccccceeeeeeeEeeeeec
Confidence 67778888888999999999998888764321 222223333333333346777778888999996
Q ss_pred Ccc--eEEEEeecCCcceEEEEEecCCC-EEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecC-C
Q 002407 731 IDL--VHKFKGFRNTNSQISASLTANGR-YVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWP-G 806 (927)
Q Consensus 731 ~~~--~~~~~~~~~~~~v~sv~fspdg~-~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~-g 806 (927)
... .+.+.++. ..+..+.++|-.. ...+++.||.+.|||+-.+.+......-......-.|+.++.+++++.+ |
T Consensus 383 ~~g~l~H~l~ghs--d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hg 460 (1113)
T KOG0644|consen 383 YTGQLLHNLMGHS--DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHG 460 (1113)
T ss_pred ccchhhhhhcccc--cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCC
Confidence 554 55555554 4466678888554 5568899999999999887665433211122223456666666666554 5
Q ss_pred ceeEEe
Q 002407 807 VGDTWG 812 (927)
Q Consensus 807 ~~~i~~ 812 (927)
+.++.+
T Consensus 461 ql~i~g 466 (1113)
T KOG0644|consen 461 QLYILG 466 (1113)
T ss_pred ceEEec
Confidence 555543
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.4e-11 Score=124.83 Aligned_cols=200 Identities=15% Similarity=0.217 Sum_probs=151.9
Q ss_pred ecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeec
Q 002407 453 QAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (927)
Q Consensus 453 ~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~ 531 (927)
..|..++++..|+. |-++|.+.+-|-+..|||++++..
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~----------------------------------------- 185 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS----------------------------------------- 185 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-----------------------------------------
Confidence 34678999999987 778999999999999999987521
Q ss_pred ccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe----
Q 002407 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS---- 605 (927)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~---- 605 (927)
+.....|-.|..+|.+++|... +.+++.+.||.||+||++..+--.++-
T Consensus 186 -------------------------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~ 240 (364)
T KOG0290|consen 186 -------------------------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS 240 (364)
T ss_pred -------------------------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence 0112245579999999999986 789999999999999999765444332
Q ss_pred cCCceEEEEEccCCCCEEEEEECCC-cEEEEeCCCCc--EEEeccCCCcEEEEEECCC-CCEEEEEECCCeEEEEECCCC
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDA-KVRIWSIPERQ--VVDWNDLHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg-~I~IWDl~t~~--~v~~~~~~~~V~sla~spd-g~~l~tgs~Dg~I~IwDl~~~ 681 (927)
...+...++|++.+.+++++-..|. .|.|.|++... +..+..|...|+.++|.|. ...|++++.|..+.|||+...
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 2567889999998899998876654 59999998743 4457788899999999995 568999999999999999764
Q ss_pred eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC
Q 002407 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (927)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D 722 (927)
-........+ .-.....|+.++|++..+..|+++...
T Consensus 321 ~~~~~~dPil----ay~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 321 PRENGEDPIL----AYTAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred cccCCCCchh----hhhccceeeeeeecccCCCEEEEEecC
Confidence 3311110000 013567899999998777677766543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-10 Score=131.15 Aligned_cols=232 Identities=13% Similarity=0.061 Sum_probs=149.4
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEecCcCcccceeecccccCccccEE
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE---DCVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~---DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~ 507 (927)
..|.+++...... +.+..+...+...+|||||+.||..+. +..|.+|++.+++...
T Consensus 179 ~~l~~~d~dg~~~------~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------- 237 (429)
T PRK03629 179 YELRVSDYDGYNQ------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------- 237 (429)
T ss_pred eeEEEEcCCCCCC------EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE---------------
Confidence 4677776543332 233457788999999999999987642 3568888876543111
Q ss_pred EEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEE-e
Q 002407 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSS-S 585 (927)
Q Consensus 508 ~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sg-s 585 (927)
+..+.+| +..+.|+|| ..|+.. +
T Consensus 238 ----------------------------------------------------l~~~~~~---~~~~~~SPDG~~La~~~~ 262 (429)
T PRK03629 238 ----------------------------------------------------VASFPRH---NGAPAFSPDGSKLAFALS 262 (429)
T ss_pred ----------------------------------------------------ccCCCCC---cCCeEECCCCCEEEEEEc
Confidence 0011122 234789998 445543 4
Q ss_pred CCC--cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECC-Cc--EEEEeCCCCcEEEeccCCCcEEEEEECCC
Q 002407 586 MDK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD-AK--VRIWSIPERQVVDWNDLHEMVTAACYTPD 660 (927)
Q Consensus 586 ~Dg--tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D-g~--I~IWDl~t~~~v~~~~~~~~V~sla~spd 660 (927)
.++ .|++||+.+++......+...+....|+| +++.|+..+.+ +. |.++|+.+++...............|+||
T Consensus 263 ~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD 341 (429)
T PRK03629 263 KTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSD 341 (429)
T ss_pred CCCCcEEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence 454 59999999988776665666788999999 99988777654 44 55557777766554444445667899999
Q ss_pred CCEEEEEECC---CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc---EEEEECC-cc
Q 002407 661 GQGALVGSYK---GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR---IRVVDGI-DL 733 (927)
Q Consensus 661 g~~l~tgs~D---g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~---I~VwD~~-~~ 733 (927)
|++|+..+.+ ..|.+||+.++...... .........|+|+|. .|+.++.++. +.+++.. ..
T Consensus 342 G~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-----------~~~~~~~p~~SpDG~-~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 342 GKFMVMVSSNGGQQHIAKQDLATGGVQVLT-----------DTFLDETPSIAPNGT-MVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCeEEeC-----------CCCCCCCceECCCCC-EEEEEEcCCCceEEEEEECCCCC
Confidence 9999886654 35888999887643221 111233568999998 5666666654 6666642 23
Q ss_pred eEEEEeecCCcceEEEEEec
Q 002407 734 VHKFKGFRNTNSQISASLTA 753 (927)
Q Consensus 734 ~~~~~~~~~~~~v~sv~fsp 753 (927)
...+.. +...+...+|+|
T Consensus 410 ~~~l~~--~~~~~~~p~Wsp 427 (429)
T PRK03629 410 KARLPA--TDGQVKFPAWSP 427 (429)
T ss_pred eEECcc--CCCCcCCcccCC
Confidence 333433 344566677776
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-11 Score=136.90 Aligned_cols=187 Identities=16% Similarity=0.242 Sum_probs=150.0
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEe-----cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC--------------C
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFS-----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE--------------R 640 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~-----h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t--------------~ 640 (927)
-|+.+-.-|.|.+.|....+..+.|. ....|+|+.|-|.+...|+++-.+|.+.+||..- +
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 37777777888888877644433332 4578999999998888899999999999997521 1
Q ss_pred c---------------EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEE
Q 002407 641 Q---------------VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG 705 (927)
Q Consensus 641 ~---------------~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts 705 (927)
. +..|.-....|+..+|+|||++||+.+.||.++|||..+.+++..+ +.--+...|
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m---------kSYFGGLLC 337 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM---------KSYFGGLLC 337 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH---------HhhccceEE
Confidence 0 1123333457899999999999999999999999999988776654 356678999
Q ss_pred EEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEec--------------------------------
Q 002407 706 FQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTA-------------------------------- 753 (927)
Q Consensus 706 l~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fsp-------------------------------- 753 (927)
++|+|||+ +|++|++|..|.||...+......++.|..+|..++|.|
T Consensus 338 vcWSPDGK-yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~ 416 (636)
T KOG2394|consen 338 VCWSPDGK-YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGT 416 (636)
T ss_pred EEEcCCcc-EEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCC
Confidence 99999998 899999999999999888888888999999999999982
Q ss_pred ---CC-------------CEEEEEECCCcEEEEECCCCC
Q 002407 754 ---NG-------------RYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 754 ---dg-------------~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
++ -.|.+.+.|-.+.+||+....
T Consensus 417 ~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 417 GSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred CCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence 01 246788899999999998754
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-10 Score=132.00 Aligned_cols=213 Identities=10% Similarity=0.085 Sum_probs=144.6
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEecCcCcccceeecccccCccccEE
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE---DCVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~---DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~ 507 (927)
..|.+++...... +.+..|...|.+.+|+|||+.|+..+. +..|.+|++.+++..
T Consensus 182 ~~l~~~d~dg~~~------~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---------------- 239 (435)
T PRK05137 182 KRLAIMDQDGANV------RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---------------- 239 (435)
T ss_pred eEEEEECCCCCCc------EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----------------
Confidence 4566666543322 345678889999999999999988764 467999998665321
Q ss_pred EEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCc-EE-EEEe
Q 002407 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ-HL-LSSS 585 (927)
Q Consensus 508 ~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~-~L-~Sgs 585 (927)
.+..+.+.+....|+|++ .| ++.+
T Consensus 240 ------------------------------------------------------~l~~~~g~~~~~~~SPDG~~la~~~~ 265 (435)
T PRK05137 240 ------------------------------------------------------LVGNFPGMTFAPRFSPDGRKVVMSLS 265 (435)
T ss_pred ------------------------------------------------------EeecCCCcccCcEECCCCCEEEEEEe
Confidence 111233455677899984 44 4556
Q ss_pred CCCc--EEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEEC-CC--cEEEEeCCCCcEEEeccCCCcEEEEEECCC
Q 002407 586 MDKT--VRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL-DA--KVRIWSIPERQVVDWNDLHEMVTAACYTPD 660 (927)
Q Consensus 586 ~Dgt--V~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~-Dg--~I~IWDl~t~~~v~~~~~~~~V~sla~spd 660 (927)
.++. |++||+.+++......+........|+| +++.|+..+. +| .|++||+.+++...+......+....|+|+
T Consensus 266 ~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Spd 344 (435)
T PRK05137 266 QGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPR 344 (435)
T ss_pred cCCCceEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCC
Confidence 6655 7888999887766555666677899999 9988887764 33 588889888776665555556777899999
Q ss_pred CCEEEEEECC---CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-----CcEEEEECC
Q 002407 661 GQGALVGSYK---GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-----SRIRVVDGI 731 (927)
Q Consensus 661 g~~l~tgs~D---g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-----g~I~VwD~~ 731 (927)
|++|+....+ ..|.+||+.++... .+ .....+..+.|+|+++.+++++... ..|.++|..
T Consensus 345 G~~ia~~~~~~~~~~i~~~d~~~~~~~-~l----------t~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 345 GDLIAFTKQGGGQFSIGVMKPDGSGER-IL----------TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CCEEEEEEcCCCceEEEEEECCCCceE-ec----------cCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 9999887654 35888898655432 11 1122466789999998544444333 257777753
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-10 Score=121.03 Aligned_cols=198 Identities=14% Similarity=0.214 Sum_probs=138.3
Q ss_pred CCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCC------------cEEEEEe--cCCceEEEEEccCCCCEEEEEEC-C
Q 002407 567 LDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK------------TCLKIFS--HSDYVTCIQFNPVDDRYFISGSL-D 629 (927)
Q Consensus 567 ~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~------------~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~-D 629 (927)
...|+|++|-|. ..|+.|+.. -|.||..... .+..++. ...+|+.|+|++ |+..+++++. |
T Consensus 140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~-dgt~l~tAS~gs 217 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNE-DGTILVTASFGS 217 (445)
T ss_pred hcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcC-CCCEEeecccCc
Confidence 346899999996 456666654 5889976521 1222333 336899999999 9999998876 4
Q ss_pred CcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE
Q 002407 630 AKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 630 g~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
..|.|||..++..+... .....++-+.|+|||.+|++++-|+..++|+.......... .-..+.|...+|
T Consensus 218 ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw---------~lgsgrvqtacW 288 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW---------ILGSGRVQTACW 288 (445)
T ss_pred ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecce---------eccCCceeeeee
Confidence 56999999999887765 44578889999999999999999999999965543322221 133448999999
Q ss_pred cCCCCcEEEEEECCCcEEEEEC--Cc--------ceEEE--------Eeec----CCcceEEEEEecCCCEEEEEECCC-
Q 002407 709 APGSSSEVLVTSADSRIRVVDG--ID--------LVHKF--------KGFR----NTNSQISASLTANGRYVVSASEDS- 765 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~VwD~--~~--------~~~~~--------~~~~----~~~~v~sv~fspdg~~Lasgs~Dg- 765 (927)
+|.|..+|++.+....|+-... .. ....+ .... ..+.+.+++|.|.|.|||+.-..+
T Consensus 289 spcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 289 SPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred cCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 9999988888777766655431 10 00000 0001 145677899999999999875543
Q ss_pred -------cEEEEECCCC
Q 002407 766 -------YVYVWKYEAE 775 (927)
Q Consensus 766 -------~I~IWdl~s~ 775 (927)
.|.+||....
T Consensus 369 ~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 369 FVLLCKLHISRFDTRKS 385 (445)
T ss_pred hhhhhhhhhhhhccccc
Confidence 3667777653
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-12 Score=138.81 Aligned_cols=229 Identities=13% Similarity=0.144 Sum_probs=184.4
Q ss_pred EEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC
Q 002407 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL 648 (927)
Q Consensus 570 V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~ 648 (927)
-..+.|+.+ ..|+.|+..|.|-.+|..+++....+.-...|.++.|.. +..+|+++ ....++|||- .|.-+..+..
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LH-neq~~AVA-QK~y~yvYD~-~GtElHClk~ 208 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLH-NEQFFAVA-QKKYVYVYDN-NGTELHCLKR 208 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhc-chHHHHhh-hhceEEEecC-CCcEEeehhh
Confidence 356788888 569999999999999999999999999888999999997 77777665 5678999994 4555666677
Q ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 649 ~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
...|..+.|-|.--+|++++..|.++.-|+.+|+++..+. ...+.+..|+-+|-+. ++-+|...|+|.+|
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~---------t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlW 278 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR---------TGAGRTDVMKQNPYNA-VIHLGHSNGTVSLW 278 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHH---------ccCCccchhhcCCccc-eEEEcCCCceEEec
Confidence 7889999999999899999999999999999999887753 5567788888899765 78889999999999
Q ss_pred ECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCce
Q 002407 729 DGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVG 808 (927)
Q Consensus 729 D~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~ 808 (927)
.........+...|.++|.++++.++|+|+||++.|..++|||++.-..+..... ........+ ++...+|++|...+
T Consensus 279 SP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~-SqkglLA~~~G~~v 356 (545)
T KOG1272|consen 279 SPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSL-SQKGLLALSYGDHV 356 (545)
T ss_pred CCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccc-ccccceeeecCCee
Confidence 9665555555556788999999999999999999999999999998776554433 112222233 34456688888888
Q ss_pred eEEee
Q 002407 809 DTWGL 813 (927)
Q Consensus 809 ~i~~~ 813 (927)
.+|..
T Consensus 357 ~iw~d 361 (545)
T KOG1272|consen 357 QIWKD 361 (545)
T ss_pred eeehh
Confidence 88863
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-10 Score=121.74 Aligned_cols=293 Identities=14% Similarity=0.151 Sum_probs=193.7
Q ss_pred EEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEecCcCcccceeecccccCc
Q 002407 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY-LASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (927)
Q Consensus 424 ~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~-LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~ 502 (927)
+-....+++|.+|+....+... .+..-..++..+.|||||+. |.+...|-.|.||.+.+.+.... .-.
T Consensus 64 lC~~yk~~~vqvwsl~Qpew~c-----kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~------~~p 132 (447)
T KOG4497|consen 64 LCVAYKDPKVQVWSLVQPEWYC-----KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL------PHP 132 (447)
T ss_pred eeeeeccceEEEEEeecceeEE-----EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe------ccc
Confidence 3345667899999977665432 34566788999999999965 55566799999999988654332 122
Q ss_pred cccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEE
Q 002407 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLL 582 (927)
Q Consensus 503 ~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~ 582 (927)
...+..++|.+++.+.+.......... ..+..-. .-..+..+.-.+-..+.|.|+||+.
T Consensus 133 K~~~kg~~f~~dg~f~ai~sRrDCkdy---------v~i~~c~----------~W~ll~~f~~dT~DltgieWsPdg~-- 191 (447)
T KOG4497|consen 133 KTNVKGYAFHPDGQFCAILSRRDCKDY---------VQISSCK----------AWILLKEFKLDTIDLTGIEWSPDGN-- 191 (447)
T ss_pred ccCceeEEECCCCceeeeeecccHHHH---------HHHHhhH----------HHHHHHhcCCCcccccCceECCCCc--
Confidence 344578899999998776543311100 0000000 0022334444566788899999853
Q ss_pred EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC---------------c------
Q 002407 583 SSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER---------------Q------ 641 (927)
Q Consensus 583 Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~---------------~------ 641 (927)
.+.+||---.-.+..+...-.+..+.|+| .+++|+.|+.|+.++|.+--+- .
T Consensus 192 ------~laVwd~~Leykv~aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~k 264 (447)
T KOG4497|consen 192 ------WLAVWDNVLEYKVYAYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEK 264 (447)
T ss_pred ------EEEEecchhhheeeeeeeccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhh
Confidence 34466644333333444456788999999 9999999999999987542110 0
Q ss_pred ----E-----------------------------------EEecc-------CCCcEEEEEECCCCCEEEEEECC--CeE
Q 002407 642 ----V-----------------------------------VDWND-------LHEMVTAACYTPDGQGALVGSYK--GSC 673 (927)
Q Consensus 642 ----~-----------------------------------v~~~~-------~~~~V~sla~spdg~~l~tgs~D--g~I 673 (927)
. +.... ....+.-++|++|..++++-... +.+
T Consensus 265 e~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~Pnal 344 (447)
T KOG4497|consen 265 ETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNAL 344 (447)
T ss_pred hhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceE
Confidence 0 00000 11246778999999998886543 579
Q ss_pred EEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEec
Q 002407 674 HLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTA 753 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fsp 753 (927)
.+||++..++.... ....+|..+.|+|..+ .|+++.....+++|....... .......-.|..++|.-
T Consensus 345 W~Wdlq~l~l~avL----------iQk~piraf~WdP~~p-rL~vctg~srLY~W~psg~~~-V~vP~~GF~i~~l~W~~ 412 (447)
T KOG4497|consen 345 WLWDLQNLKLHAVL----------IQKHPIRAFEWDPGRP-RLVVCTGKSRLYFWAPSGPRV-VGVPKKGFNIQKLQWLQ 412 (447)
T ss_pred EEEechhhhhhhhh----------hhccceeEEEeCCCCc-eEEEEcCCceEEEEcCCCceE-EecCCCCceeeeEEecC
Confidence 99999876654432 3456799999999876 677777777899998544322 22233446788999999
Q ss_pred CCCEEEEEECCCcE
Q 002407 754 NGRYVVSASEDSYV 767 (927)
Q Consensus 754 dg~~Lasgs~Dg~I 767 (927)
+|..|+..+.|..-
T Consensus 413 ~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 413 PGEFIVLCGKDAFC 426 (447)
T ss_pred CCcEEEEEcCCceE
Confidence 99999999988753
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-09 Score=123.18 Aligned_cols=329 Identities=13% Similarity=0.084 Sum_probs=179.9
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEecCCce-EEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECC
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYV-TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTP 659 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V-~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~sp 659 (927)
+++-..++.|.+.|..+.+.+..+.....+ ..+.|+| |++++++++.||.|.++|+.+.+++...........+++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence 345667899999999999999999854444 4578999 99999999999999999999999998888888899999999
Q ss_pred CCCEEEEEE-CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce-EEE
Q 002407 660 DGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV-HKF 737 (927)
Q Consensus 660 dg~~l~tgs-~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~-~~~ 737 (927)
||++++++. ..+.+.++|..+.+.+..+...... ......++.++..+|..+.++++--.-+.|.+.|..... ...
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~--~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP--VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE---TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred CCCEEEEEecCCCceeEeccccccceeeccccccc--ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce
Confidence 999999875 5899999999999888775432111 112456788888888877444444455889888854321 122
Q ss_pred EeecCCcceEEEEEecCCCEEEEE-ECCCcEEEEECCCCCCcccccc---cceeeeeeeecCCCeEE-EEecCCceeEEe
Q 002407 738 KGFRNTNSQISASLTANGRYVVSA-SEDSYVYVWKYEAESRPSRSKS---ITVTHSYEHFHCQDVSV-AIPWPGVGDTWG 812 (927)
Q Consensus 738 ~~~~~~~~v~sv~fspdg~~Lasg-s~Dg~I~IWdl~s~~~~~~~~~---~~~~~~~~~~~~~~v~v-avs~~g~~~i~~ 812 (927)
.............|+|+++|++.+ .....|-++|.++......... ..........|+..-.+ +..-.+...+..
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ 245 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPL 245 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred eeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceeccc
Confidence 222334567789999999987765 4566799999887644322110 00011111222222111 111112221111
Q ss_pred ecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccccc--cCCCceecc
Q 002407 813 LQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTAR--NRSPRTSLD 890 (927)
Q Consensus 813 ~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~~~--~~s~v~s~~ 890 (927)
.....+..++...-. .+..+........ +.-+|++++++....-......+.+++.+.+..... .......
T Consensus 246 ig~~~v~v~d~~~wk--vv~~I~~~G~glF---i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~-- 318 (369)
T PF02239_consen 246 IGTDPVSVHDDYAWK--VVKTIPTQGGGLF---IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRV-- 318 (369)
T ss_dssp EE--TTT-STTTBTS--EEEEEE-SSSS-----EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--E--
T ss_pred ccCCccccchhhcCe--EEEEEECCCCcce---eecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcE--
Confidence 111111111111100 1111111111111 234999999998621112246777777765532111 0000001
Q ss_pred cCCCCCcccCCCCCEEEEEcCCC--cEEEeecCCC
Q 002407 891 ISNGISSSISAWGMVIVTAGLRG--EIRAYQNFGL 923 (927)
Q Consensus 891 ~~~~~~~a~S~dG~vLvTgs~DG--~IrvW~~~gl 923 (927)
. .+.|++||+.+-...+++ .|.+|+...|
T Consensus 319 -~---h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 319 -V---HMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp -E---EEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred -e---ccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 1 368999999766665554 5999986554
|
... |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=135.90 Aligned_cols=179 Identities=18% Similarity=0.295 Sum_probs=137.9
Q ss_pred ceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCC-CCEEEEEECCCcEEE
Q 002407 559 PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVD-DRYFISGSLDAKVRI 634 (927)
Q Consensus 559 ~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~d-g~~L~sgs~Dg~I~I 634 (927)
....|.||.+-|+||.|+.+ .+|++|+.|-.+.|||.-..+.+..+. |...|.++.|-|.. +.++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34568899999999999999 678999999999999999888888886 99999999999964 456788999999999
Q ss_pred EeCCCCc-----------EEEeccCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCCeeeeecc-cccccccccCCCC
Q 002407 635 WSIPERQ-----------VVDWNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSP-INLQNKKKRSHQR 701 (927)
Q Consensus 635 WDl~t~~-----------~v~~~~~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~-i~~~~~~~~~h~~ 701 (927)
+|+...+ ...+..|...|..++-.|++ ..+.+++.||+|+-||++......... ............-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9997521 12244556788889999988 789999999999999998743221110 0000001112224
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEE
Q 002407 702 KITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF 737 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~ 737 (927)
...++.++|..+.+|++|+.|--.++||.+..+..+
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~ 237 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSF 237 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCC
Confidence 567899999999999999999999999965544433
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=129.52 Aligned_cols=134 Identities=16% Similarity=0.359 Sum_probs=110.2
Q ss_pred CCCEEEEEecCC--cEEEEEeCCCcEEEEeCCC--------------CcEEEEE--------------e-cCCceEEEEE
Q 002407 567 LDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSS--------------KTCLKIF--------------S-HSDYVTCIQF 615 (927)
Q Consensus 567 ~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t--------------~~~~~~~--------------~-h~~~V~~v~f 615 (927)
...|+|+.|-|. ..++.+-.+|.++++|..- +....+. . -...|..++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 378999999985 7788889999999997541 1111111 1 2356888999
Q ss_pred ccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccc
Q 002407 616 NPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK 694 (927)
Q Consensus 616 sp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~ 694 (927)
+| |+++|++.+.||.+||||..+.+++.... .-+...|++|+|||++|++|+.|..|.||.+...+.+..-
T Consensus 299 S~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG------- 370 (636)
T KOG2394|consen 299 SP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG------- 370 (636)
T ss_pred cC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec-------
Confidence 99 99999999999999999999988775433 3468999999999999999999999999999999988765
Q ss_pred cccCCCCCeEEEEEcC
Q 002407 695 KKRSHQRKITGFQFAP 710 (927)
Q Consensus 695 ~~~~h~~~Vtsl~fsp 710 (927)
.+|...|..++|.|
T Consensus 371 --qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 371 --QGHKSWVSVVAFDP 384 (636)
T ss_pred --cccccceeeEeecc
Confidence 48999999999983
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.2e-10 Score=130.95 Aligned_cols=210 Identities=15% Similarity=0.133 Sum_probs=144.1
Q ss_pred eEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEe---CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEE
Q 002407 551 TVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSS---MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISG 626 (927)
Q Consensus 551 ~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs---~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sg 626 (927)
.+++..+.....+..+...+...+|+|| ..|+..+ .+..|++|++.+++..........+..++|+| +++.|+..
T Consensus 182 ~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP-DG~~La~~ 260 (429)
T PRK03629 182 RVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFA 260 (429)
T ss_pred EEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC-CCCEEEEE
Confidence 3445555555666667788999999999 4566544 24579999999887665554555566789999 88877754
Q ss_pred -ECCC--cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECC-C--eEEEEECCCCeeeeecccccccccccCCC
Q 002407 627 -SLDA--KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYK-G--SCHLYNTSENKLQQKSPINLQNKKKRSHQ 700 (927)
Q Consensus 627 -s~Dg--~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~D-g--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~ 700 (927)
+.+| .|.+||+.+++..........+....|+|||+.|+..+.+ + .|+++|+.++..... . ...
T Consensus 261 ~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l-t---------~~~ 330 (429)
T PRK03629 261 LSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI-T---------WEG 330 (429)
T ss_pred EcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe-e---------cCC
Confidence 4455 4889999998887777666778899999999998877764 3 455557766644322 1 223
Q ss_pred CCeEEEEEcCCCCcEEEEEECC--CcEEEEECCcc-eEEEEeecCCcceEEEEEecCCCEEEEEECCCc---EEEEECCC
Q 002407 701 RKITGFQFAPGSSSEVLVTSAD--SRIRVVDGIDL-VHKFKGFRNTNSQISASLTANGRYVVSASEDSY---VYVWKYEA 774 (927)
Q Consensus 701 ~~Vtsl~fspdg~~~Llsgs~D--g~I~VwD~~~~-~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~---I~IWdl~s 774 (927)
.......|+|+|..++++...+ ..|.+||.... ...+.. ........|+|||++|+.++.++. +++|++..
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~---~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD---TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC---CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 3456788999998544444433 35788885433 222221 122346789999999999988765 67777754
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.8e-10 Score=130.10 Aligned_cols=232 Identities=16% Similarity=0.123 Sum_probs=147.7
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCcCcccceeecccccCccccEEE
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~D---gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~ 508 (927)
.|.+|+...... +.|..|...|.+.+|+|||++|+..+.+ ..|.+|++.+++...
T Consensus 185 ~l~i~D~~g~~~------~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~---------------- 242 (433)
T PRK04922 185 ALQVADSDGYNP------QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL---------------- 242 (433)
T ss_pred EEEEECCCCCCc------eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE----------------
Confidence 567776543322 3345678889999999999999988743 468899986553210
Q ss_pred EccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEE-EEEeC
Q 002407 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHL-LSSSM 586 (927)
Q Consensus 509 v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L-~Sgs~ 586 (927)
+..+.+....+.|+|+ ..| ++.+.
T Consensus 243 ------------------------------------------------------l~~~~g~~~~~~~SpDG~~l~~~~s~ 268 (433)
T PRK04922 243 ------------------------------------------------------VASFRGINGAPSFSPDGRRLALTLSR 268 (433)
T ss_pred ------------------------------------------------------eccCCCCccCceECCCCCEEEEEEeC
Confidence 0011222346789998 344 45555
Q ss_pred CC--cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEEC-CCc--EEEEeCCCCcEEEeccCCCcEEEEEECCCC
Q 002407 587 DK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL-DAK--VRIWSIPERQVVDWNDLHEMVTAACYTPDG 661 (927)
Q Consensus 587 Dg--tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~-Dg~--I~IWDl~t~~~v~~~~~~~~V~sla~spdg 661 (927)
++ .|++||+.+++......+......++|+| ++++|+..+. ++. |.++++.+++.............++|+|+|
T Consensus 269 ~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG 347 (433)
T PRK04922 269 DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDG 347 (433)
T ss_pred CCCceEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCC
Confidence 55 59999999988765555655667899999 8988887664 444 777787777665444333445578999999
Q ss_pred CEEEEEECCC---eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC--CcEEEEECCc-ceE
Q 002407 662 QGALVGSYKG---SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD--SRIRVVDGID-LVH 735 (927)
Q Consensus 662 ~~l~tgs~Dg---~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D--g~I~VwD~~~-~~~ 735 (927)
++|+..+.++ .|.+||+.+++.... .+........|+|++..++++.... +.|.+++... ...
T Consensus 348 ~~Ia~~~~~~~~~~I~v~d~~~g~~~~L-----------t~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~ 416 (433)
T PRK04922 348 KKIAMVHGSGGQYRIAVMDLSTGSVRTL-----------TPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQ 416 (433)
T ss_pred CEEEEEECCCCceeEEEEECCCCCeEEC-----------CCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceE
Confidence 9998876543 599999988765422 1112334568999998444444332 4577777532 222
Q ss_pred EEEeecCCcceEEEEEec
Q 002407 736 KFKGFRNTNSQISASLTA 753 (927)
Q Consensus 736 ~~~~~~~~~~v~sv~fsp 753 (927)
.+.. ....+...+|+|
T Consensus 417 ~l~~--~~g~~~~p~wsp 432 (433)
T PRK04922 417 RLVS--ADGEVREPAWSP 432 (433)
T ss_pred Eccc--CCCCCCCCccCC
Confidence 2222 223345556655
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-10 Score=123.31 Aligned_cols=202 Identities=11% Similarity=0.072 Sum_probs=154.1
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCc----EEEEEecCCceEEEEEccCCCCEEEEEECC--CcEEEEeCCC
Q 002407 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKT----CLKIFSHSDYVTCIQFNPVDDRYFISGSLD--AKVRIWSIPE 639 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~----~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D--g~I~IWDl~t 639 (927)
..++|..++.. ++.|++|-.+|.+.+|....+. .+..+.....+..|.-++....++++|+.. ..+.|||+.+
T Consensus 104 ~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~ 182 (412)
T KOG3881|consen 104 GTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ 182 (412)
T ss_pred ccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence 34555555542 5789999999999999988442 333344456777888888666777779988 7899999998
Q ss_pred CcEEEec--------c--CCCcEEEEEECCC--CCEEEEEECCCeEEEEECCCCee-eeecccccccccccCCCCCeEEE
Q 002407 640 RQVVDWN--------D--LHEMVTAACYTPD--GQGALVGSYKGSCHLYNTSENKL-QQKSPINLQNKKKRSHQRKITGF 706 (927)
Q Consensus 640 ~~~v~~~--------~--~~~~V~sla~spd--g~~l~tgs~Dg~I~IwDl~~~~~-~~~~~i~~~~~~~~~h~~~Vtsl 706 (927)
.+.+... + .+-+++.+.|-+. ...|++++.-+.+++||++.++. +..+ .....+|+++
T Consensus 183 ~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f---------d~~E~~is~~ 253 (412)
T KOG3881|consen 183 SKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF---------DFLENPISST 253 (412)
T ss_pred ceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEe---------ccccCcceee
Confidence 7544211 1 1246788999987 88999999999999999986543 2222 2457889999
Q ss_pred EEcCCCCcEEEEEECCCcEEEEECCcceEEEE-eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 707 QFAPGSSSEVLVTSADSRIRVVDGIDLVHKFK-GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 707 ~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~-~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
...|.+. +|++|..-+.+..||.+.....-. .....+.+.++..+|.+++|++++-|..|+|+|+++....
T Consensus 254 ~l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 254 GLTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred eecCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 9999887 799999999999999765443322 2234678999999999999999999999999999995544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.9e-10 Score=130.14 Aligned_cols=209 Identities=15% Similarity=0.151 Sum_probs=147.0
Q ss_pred EeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeC---CCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEE-EE
Q 002407 552 VFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM---DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SG 626 (927)
Q Consensus 552 v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~---DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~-sg 626 (927)
+++..+.....+..|...+....|+|| ..|+..+. +..|++||+.+++......+...+...+|+| +++.|+ +.
T Consensus 186 ~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~ 264 (435)
T PRK05137 186 IMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSL 264 (435)
T ss_pred EECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEE
Confidence 445556666778888899999999999 56766653 4689999999988765555777788999999 887765 55
Q ss_pred ECCCc--EEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEEC-CC--eEEEEECCCCeeeeecccccccccccCCCC
Q 002407 627 SLDAK--VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSY-KG--SCHLYNTSENKLQQKSPINLQNKKKRSHQR 701 (927)
Q Consensus 627 s~Dg~--I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~-Dg--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~ 701 (927)
+.++. |.+||+.+++...+..+........|+|||+.|+..+. +| .|++||+.++...... ....
T Consensus 265 ~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt----------~~~~ 334 (435)
T PRK05137 265 SQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS----------FGGG 334 (435)
T ss_pred ecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee----------cCCC
Confidence 55655 77789998888776666666778999999999888764 33 6888898776543321 2234
Q ss_pred CeEEEEEcCCCCcEEEEEEC-C--CcEEEEECCc-ceEEEEeecCCcceEEEEEecCCCEEEEEECC------CcEEEEE
Q 002407 702 KITGFQFAPGSSSEVLVTSA-D--SRIRVVDGID-LVHKFKGFRNTNSQISASLTANGRYVVSASED------SYVYVWK 771 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~-D--g~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D------g~I~IWd 771 (927)
.+....|+|+++. |+.... . ..|.+||... ....+. ....+..+.|+|||++|+..+.+ ..|++++
T Consensus 335 ~~~~~~~SpdG~~-ia~~~~~~~~~~i~~~d~~~~~~~~lt---~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 335 RYSTPVWSPRGDL-IAFTKQGGGQFSIGVMKPDGSGERILT---SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred cccCeEECCCCCE-EEEEEcCCCceEEEEEECCCCceEecc---CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence 4567889999984 544433 2 3578888532 222222 12235678999999998876543 2577777
Q ss_pred CCCC
Q 002407 772 YEAE 775 (927)
Q Consensus 772 l~s~ 775 (927)
+...
T Consensus 411 l~g~ 414 (435)
T PRK05137 411 LTGR 414 (435)
T ss_pred CCCC
Confidence 7653
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-09 Score=112.96 Aligned_cols=178 Identities=13% Similarity=0.254 Sum_probs=132.7
Q ss_pred CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEEec---cCCCcEEEEEECCCCCE
Q 002407 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDWN---DLHEMVTAACYTPDGQG 663 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~~~---~~~~~V~sla~spdg~~ 663 (927)
..|.|||=....++.++....+|.+|.+.+ +.|++. ..+.|+||...+ .+.+..+ ..+..+.+++-+.+..+
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r---~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRR---DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcC---CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 469999988888999999999999999976 445544 468899999874 4444333 32344444443334444
Q ss_pred EEE-EECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc-EEEEECC--cceEEEEe
Q 002407 664 ALV-GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR-IRVVDGI--DLVHKFKG 739 (927)
Q Consensus 664 l~t-gs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~-I~VwD~~--~~~~~~~~ 739 (927)
||. |-.-|.|.|-|+...+...... ..+|...|.|+++..+|. ++++++..|+ |||||.. +.+..++.
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~-------I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSI-------INAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceE-------EEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 444 4456899999998765531111 158999999999999987 8999998887 8999964 45555555
Q ss_pred ecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 740 FRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 740 ~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
-.....|.+++|+|+..+|+++|+.|+|+||.++....
T Consensus 223 G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 55667899999999999999999999999999987543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-09 Score=127.25 Aligned_cols=210 Identities=17% Similarity=0.186 Sum_probs=142.9
Q ss_pred EeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEE-EE
Q 002407 552 VFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SG 626 (927)
Q Consensus 552 v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~D---gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~-sg 626 (927)
+++..+.....+..|...+....|+|+ ..|+..+.+ ..|++||+.+++......+.....++.|+| +++.|+ +.
T Consensus 188 i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp-DG~~l~~~~ 266 (433)
T PRK04922 188 VADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP-DGRRLALTL 266 (433)
T ss_pred EECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC-CCCEEEEEE
Confidence 445556666667778888999999999 567776643 469999999888765544555666889999 887665 55
Q ss_pred ECCC--cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEEC-CCe--EEEEECCCCeeeeecccccccccccCCCC
Q 002407 627 SLDA--KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSY-KGS--CHLYNTSENKLQQKSPINLQNKKKRSHQR 701 (927)
Q Consensus 627 s~Dg--~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~-Dg~--I~IwDl~~~~~~~~~~i~~~~~~~~~h~~ 701 (927)
+.++ .|++||+.+++......+......++|+|||+.|+..+. +|. |+++++.+++..... ....
T Consensus 267 s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt----------~~g~ 336 (433)
T PRK04922 267 SRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT----------FQGN 336 (433)
T ss_pred eCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee----------cCCC
Confidence 5665 499999999887776655555678899999999887764 444 777777766543221 1223
Q ss_pred CeEEEEEcCCCCcEEEEEECCC--cEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECC---CcEEEEECCC
Q 002407 702 KITGFQFAPGSSSEVLVTSADS--RIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASED---SYVYVWKYEA 774 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~Dg--~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D---g~I~IWdl~s 774 (927)
.....+|+|+++.++++...++ .|.+||.......... .........|+|||++|+..+.+ +.|+++++..
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 3446899999984434333333 5899996433222111 12234467899999998877653 3577787754
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-09 Score=124.11 Aligned_cols=196 Identities=18% Similarity=0.163 Sum_probs=125.4
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 452 IQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~~LaSgs~D---gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
+..|...|.+.+|+|||+.||..+.+ ..|.+||+.+++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~------------------------------------ 234 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV------------------------------------ 234 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE------------------------------------
Confidence 45678889999999999999887643 358999987654211
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEE-EEeCCCcEEEE--eCCCCcEEEEE
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL-SSSMDKTVRLW--HLSSKTCLKIF 604 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~-Sgs~DgtV~lW--Dl~t~~~~~~~ 604 (927)
+....+.+....|+|+ ..|+ +.+.++...|| |+.++......
T Consensus 235 ----------------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt 280 (427)
T PRK02889 235 ----------------------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT 280 (427)
T ss_pred ----------------------------------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC
Confidence 0111223456889998 4554 56778776665 45555543333
Q ss_pred ecCCceEEEEEccCCCCEEEEEEC-CCcEEEEe--CCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCC---eEEEEEC
Q 002407 605 SHSDYVTCIQFNPVDDRYFISGSL-DAKVRIWS--IPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKG---SCHLYNT 678 (927)
Q Consensus 605 ~h~~~V~~v~fsp~dg~~L~sgs~-Dg~I~IWD--l~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg---~I~IwDl 678 (927)
.+...+....|+| +++.|+..+. ++...||. +.+++...............|+|||++|+..+.++ .|.+||+
T Consensus 281 ~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~ 359 (427)
T PRK02889 281 QSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDL 359 (427)
T ss_pred CCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence 3555567789999 9988876654 45666664 45555433332223345678999999998877654 5999999
Q ss_pred CCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc--EEEEE
Q 002407 679 SENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR--IRVVD 729 (927)
Q Consensus 679 ~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~--I~VwD 729 (927)
.++...... .........|+|++..++++....+. +.+.+
T Consensus 360 ~~g~~~~lt-----------~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~ 401 (427)
T PRK02889 360 ATGQVTALT-----------DTTRDESPSFAPNGRYILYATQQGGRSVLAAVS 401 (427)
T ss_pred CCCCeEEcc-----------CCCCccCceECCCCCEEEEEEecCCCEEEEEEE
Confidence 887654321 11223567899999854444444443 44444
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=8e-09 Score=117.38 Aligned_cols=310 Identities=15% Similarity=0.126 Sum_probs=183.0
Q ss_pred EEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccc
Q 002407 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN 504 (927)
Q Consensus 425 ~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~ 504 (927)
++-...+.|.+.+..+.+... ++..+...-..+.|+|||+++++++.||.|.++|+.+.+.+.++.. ..
T Consensus 10 V~~~~~~~v~viD~~t~~~~~-----~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~------G~ 78 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVA-----RIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV------GG 78 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEE-----EEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-------SS
T ss_pred EEecCCCEEEEEECCCCeEEE-----EEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec------CC
Confidence 455667888888877665543 3344433345578999999999999999999999999998777642 22
Q ss_pred cEEEEccCCCCCeeccccc-CCceeeecccccccccccccCcccccceEee-cCCCceEEEcc-------CCCCEEEEEe
Q 002407 505 MLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFA-LSDKPICSFQG-------HLDDVLDLSW 575 (927)
Q Consensus 505 ~v~~v~~spd~~~la~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~-~s~k~i~~l~g-------H~~~V~~l~~ 575 (927)
....+++++++.+++++.. .+.+ .+++ .+.+++..+.. ....+..|..
T Consensus 79 ~~~~i~~s~DG~~~~v~n~~~~~v-----------------------~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~ 135 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANYEPGTV-----------------------SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVA 135 (369)
T ss_dssp EEEEEEE--TTTEEEEEEEETTEE-----------------------EEEETTT--EEEEEE--EE-TTTS---EEEEEE
T ss_pred CcceEEEcCCCCEEEEEecCCCce-----------------------eEeccccccceeecccccccccccCCCceeEEe
Confidence 3467888999998887643 3333 1222 12344444332 2346778877
Q ss_pred cCC-cEEEEEeC-CCcEEEEeCCCCcEE--EEEecCCceEEEEEccCCCCEEEEE-ECCCcEEEEeCCCCcEEEeccCC-
Q 002407 576 SKS-QHLLSSSM-DKTVRLWHLSSKTCL--KIFSHSDYVTCIQFNPVDDRYFISG-SLDAKVRIWSIPERQVVDWNDLH- 649 (927)
Q Consensus 576 spd-~~L~Sgs~-DgtV~lWDl~t~~~~--~~~~h~~~V~~v~fsp~dg~~L~sg-s~Dg~I~IWDl~t~~~v~~~~~~- 649 (927)
++. ..++..-. -+.|.+-|....+.+ ..+..........|+| ++++|+.+ ..+..|-++|..+++++......
T Consensus 136 s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~ 214 (369)
T PF02239_consen 136 SPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK 214 (369)
T ss_dssp -SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS
T ss_pred cCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeeccc
Confidence 776 54555555 478888898776544 3444667788999999 88887765 45678999999998877543321
Q ss_pred ----CcEEEEEECCC----------CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 650 ----EMVTAACYTPD----------GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 650 ----~~V~sla~spd----------g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
..+..+ .+|. +...++.-....+.+||....+.+.++. ..... .-+..+|+++ +
T Consensus 215 ~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~---------~~G~g-lFi~thP~s~-~ 282 (369)
T PF02239_consen 215 KPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIP---------TQGGG-LFIKTHPDSR-Y 282 (369)
T ss_dssp SBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE----------SSSS---EE--TT-S-E
T ss_pred cccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEE---------CCCCc-ceeecCCCCc-c
Confidence 222222 1222 2222222223455567777777776654 23333 6778899988 5
Q ss_pred EEEE----ECCCcEEEEECCcceEEEEeec-CCcceEEEEEecCCCEEEEEECC--CcEEEEECCCCCCcccc
Q 002407 716 VLVT----SADSRIRVVDGIDLVHKFKGFR-NTNSQISASLTANGRYVVSASED--SYVYVWKYEAESRPSRS 781 (927)
Q Consensus 716 Llsg----s~Dg~I~VwD~~~~~~~~~~~~-~~~~v~sv~fspdg~~Lasgs~D--g~I~IWdl~s~~~~~~~ 781 (927)
+.+. ....+|.|+|..++........ ....+..+.|+++|+++..+..+ +.|.|||..+.+...+.
T Consensus 283 vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 283 VWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp EEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 5555 4568999999888754433321 22348899999999987665543 36999999987665444
|
... |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-09 Score=130.18 Aligned_cols=224 Identities=14% Similarity=0.198 Sum_probs=146.3
Q ss_pred EeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc--------EEEeccCCCcEEEEEECCCCCEE
Q 002407 593 WHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--------VVDWNDLHEMVTAACYTPDGQGA 664 (927)
Q Consensus 593 WDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~--------~v~~~~~~~~V~sla~spdg~~l 664 (927)
|+++.-...+...|...|..++.++.++.+|++|+.||+|++|+++.-. ...+......+.++...+.+..+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 6655443444445999999999998566999999999999999986421 11233355789999999999999
Q ss_pred EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc-EEEEEECCCcEEEEECCcc--eEEEEeec
Q 002407 665 LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS-EVLVTSADSRIRVVDGIDL--VHKFKGFR 741 (927)
Q Consensus 665 ~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~-~Llsgs~Dg~I~VwD~~~~--~~~~~~~~ 741 (927)
|+++.||.|++.++................+.......|..-+|...... .|+.+..-+.|..||.+.. ...++...
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 99999999999998763222111111111122223333444445544444 7888889999999997643 23334444
Q ss_pred CCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccc---cceeeeeeeecCC--CeEEEEe--cCCceeEEeec
Q 002407 742 NTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKS---ITVTHSYEHFHCQ--DVSVAIP--WPGVGDTWGLQ 814 (927)
Q Consensus 742 ~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~---~~~~~~~~~~~~~--~v~vavs--~~g~~~i~~~~ 814 (927)
..+.|++++.+|.+.++++|+..|.+.+||++-..+...-.. ....+-..++... .+.+... ..+.+.+|++.
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 567899999999999999999999999999987544322110 1112222333322 3333333 34556777766
Q ss_pred CC
Q 002407 815 DT 816 (927)
Q Consensus 815 d~ 816 (927)
.+
T Consensus 1274 ~g 1275 (1431)
T KOG1240|consen 1274 TG 1275 (1431)
T ss_pred cC
Confidence 55
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-07 Score=107.03 Aligned_cols=204 Identities=14% Similarity=0.193 Sum_probs=134.0
Q ss_pred CEEEEEecCC-cEEEEEe-CCCcEEEEeCCC-CcEEE---EEec-----------CCceEEEEEccCCCCEEEEEEC-CC
Q 002407 569 DVLDLSWSKS-QHLLSSS-MDKTVRLWHLSS-KTCLK---IFSH-----------SDYVTCIQFNPVDDRYFISGSL-DA 630 (927)
Q Consensus 569 ~V~~l~~spd-~~L~Sgs-~DgtV~lWDl~t-~~~~~---~~~h-----------~~~V~~v~fsp~dg~~L~sgs~-Dg 630 (927)
....++++|+ .+|+++. .+++|.++++.. +.... .+.| .....++.|+| ++++|++... ..
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 4456888888 6666665 589999999987 33332 2222 24578999999 9888877654 34
Q ss_pred cEEEEeCCCCc--EEE----eccCCCcEEEEEECCCCCEEEEEEC-CCeEEEEECC--CCeeeeecccccccccccCCCC
Q 002407 631 KVRIWSIPERQ--VVD----WNDLHEMVTAACYTPDGQGALVGSY-KGSCHLYNTS--ENKLQQKSPINLQNKKKRSHQR 701 (927)
Q Consensus 631 ~I~IWDl~t~~--~v~----~~~~~~~V~sla~spdg~~l~tgs~-Dg~I~IwDl~--~~~~~~~~~i~~~~~~~~~h~~ 701 (927)
.|.+|++.... +.. ..........++|+|+++++.+... ++.|.+|++. ++.+.....+...... .....
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~-~~~~~ 245 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG-FTGEN 245 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT-SCSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc-ccccC
Confidence 69999987654 422 2344568999999999998877654 6779999988 5544333222211111 11223
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEEECC----cceEEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCC
Q 002407 702 KITGFQFAPGSSSEVLVTSADSRIRVVDGI----DLVHKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEA 774 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~----~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s 774 (927)
....++++|+++.++++....+.|.+|+.. .+...-...........++++|+|++|+++. .++.|.+|+++.
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 688999999998666666788999999962 2222222222344578899999999999887 566799998853
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-09 Score=121.60 Aligned_cols=207 Identities=17% Similarity=0.187 Sum_probs=134.9
Q ss_pred EeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEE-EE
Q 002407 552 VFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SG 626 (927)
Q Consensus 552 v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~D---gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~-sg 626 (927)
+++..+.....+..+...+...+|+|+ ..|+..+.+ ..|++||+.+++..........+....|+| +++.|+ +.
T Consensus 180 ~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~ 258 (427)
T PRK02889 180 ISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSP-DGRTLAVAL 258 (427)
T ss_pred EECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEE
Confidence 344455566667778889999999999 567766543 359999999988765544556677899999 888776 56
Q ss_pred ECCCcEEEE--eCCCCcEEEeccCCCcEEEEEECCCCCEEEEEEC-CCeEEEEE--CCCCeeeeecccccccccccCCCC
Q 002407 627 SLDAKVRIW--SIPERQVVDWNDLHEMVTAACYTPDGQGALVGSY-KGSCHLYN--TSENKLQQKSPINLQNKKKRSHQR 701 (927)
Q Consensus 627 s~Dg~I~IW--Dl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~-Dg~I~IwD--l~~~~~~~~~~i~~~~~~~~~h~~ 701 (927)
+.++...|| |+.++....+..+........|+|||+.|+..+. +|...||. +.++...... ....
T Consensus 259 ~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt----------~~g~ 328 (427)
T PRK02889 259 SRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT----------FTGS 328 (427)
T ss_pred ccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe----------cCCC
Confidence 777776655 5556665555555555677899999998887654 45555554 4444332211 1112
Q ss_pred CeEEEEEcCCCCcEEEEEECCC---cEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC-c--EEEEEC
Q 002407 702 KITGFQFAPGSSSEVLVTSADS---RIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS-Y--VYVWKY 772 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~Dg---~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg-~--I~IWdl 772 (927)
......|+|+|+ .|+..+.++ .|.+||........... ........|+|||++|+.++.++ . +++.++
T Consensus 329 ~~~~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 329 YNTSPRISPDGK-LLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CcCceEECCCCC-EEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 234578999998 555555443 69999964332221111 12335679999999998877544 2 444444
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-09 Score=110.11 Aligned_cols=116 Identities=16% Similarity=0.375 Sum_probs=92.3
Q ss_pred CCCCEEEEEecCC-cEEE--EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECC---CcEEEEeCCC
Q 002407 566 HLDDVLDLSWSKS-QHLL--SSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD---AKVRIWSIPE 639 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~--Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D---g~I~IWDl~t 639 (927)
..++|.+++|+|+ ..|+ .|..+..|.|||++ ++.+..+. ...++.|.|+| +|++|++++.+ |.|.+||+++
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 3457999999998 5543 34567899999997 55555554 56788999999 99999998754 5699999999
Q ss_pred CcEEEeccCCCcEEEEEECCCCCEEEEEEC------CCeEEEEECCCCeeeee
Q 002407 640 RQVVDWNDLHEMVTAACYTPDGQGALVGSY------KGSCHLYNTSENKLQQK 686 (927)
Q Consensus 640 ~~~v~~~~~~~~V~sla~spdg~~l~tgs~------Dg~I~IwDl~~~~~~~~ 686 (927)
.+.+....+. .++.++|+|+|++|+++.. |+.++||+.. |+++..
T Consensus 135 ~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 135 KKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred CEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 8888776655 4789999999999999875 6789999986 455444
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-08 Score=119.31 Aligned_cols=142 Identities=23% Similarity=0.398 Sum_probs=115.5
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
.++++|.--+.|-+|........ ..+.||++.|..+.|+-||+|+||.|+|.++|+|++++.+...
T Consensus 146 ~~i~~gsv~~~iivW~~~~dn~p-----~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------- 211 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHEDNKP-----IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------- 211 (967)
T ss_pred EEEEeccccccEEEEeccccCCc-----ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---------
Confidence 34778888888889987622221 1578999999999999999999999999999999998765322
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL 581 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L 581 (927)
...-+|...|+.+.|+|+ ++
T Consensus 212 -----------------------------------------------------------~~~fgHsaRvw~~~~~~n-~i 231 (967)
T KOG0974|consen 212 -----------------------------------------------------------CTGFGHSARVWACCFLPN-RI 231 (967)
T ss_pred -----------------------------------------------------------cccccccceeEEEEeccc-ee
Confidence 122379999999999998 99
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEe-c-CCceEEEEEccCCCCEEEEEECCCcEEEEeCCC
Q 002407 582 LSSSMDKTVRLWHLSSKTCLKIFS-H-SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE 639 (927)
Q Consensus 582 ~Sgs~DgtV~lWDl~t~~~~~~~~-h-~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t 639 (927)
+|++.|.+.++|+....+.. .+. | ...|+.++..+ +...+++++.|+.+++|++..
T Consensus 232 ~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence 99999999999976644443 554 4 46799999998 888999999999999999854
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-08 Score=114.49 Aligned_cols=318 Identities=15% Similarity=0.131 Sum_probs=188.0
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEE-----ECC-----CcEEEEeC
Q 002407 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISG-----SLD-----AKVRIWSI 637 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sg-----s~D-----g~I~IWDl 637 (927)
.+++..++++++.++..+.+..|+|++..+...+.+.... .+.++.|+| .+++|.+- ..+ -.+.+|++
T Consensus 35 ~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~-~~~~L~fSP-~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK-KTYDLLFSP-KGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred CcceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc-eeeeeeecc-cccccccccccccccCCCCCCCceeeeee
Confidence 3467788899999999999999999999998755554444 899999999 88887662 112 34779999
Q ss_pred CCCcEEEeccCC-CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc-E
Q 002407 638 PERQVVDWNDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS-E 715 (927)
Q Consensus 638 ~t~~~v~~~~~~-~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~-~ 715 (927)
.++.....+... ..-++..|++|..+ ++--..+.+++|++...+.... +-|...|+.+.++|.... .
T Consensus 113 et~~~~s~~q~k~Q~~W~~qfs~dEsl-~arlv~nev~f~~~~~f~~~~~----------kl~~~~i~~f~lSpgp~~~~ 181 (566)
T KOG2315|consen 113 ETGVQRSQIQKKMQNGWVPQFSIDESL-AARLVSNEVQFYDLGSFKTIQH----------KLSVSGITMLSLSPGPEPPF 181 (566)
T ss_pred ccceehhheehhhhcCcccccccchhh-hhhhhcceEEEEecCCccceee----------eeeccceeeEEecCCCCCce
Confidence 985444332222 12258889988754 3333457899999987443322 356788999999997443 3
Q ss_pred EEE-----EECCCcEEEEECCcc-----eEEEEeecCCcceEEEEEecCCCE-EEEEE--CC---------CcEEEEECC
Q 002407 716 VLV-----TSADSRIRVVDGIDL-----VHKFKGFRNTNSQISASLTANGRY-VVSAS--ED---------SYVYVWKYE 773 (927)
Q Consensus 716 Lls-----gs~Dg~I~VwD~~~~-----~~~~~~~~~~~~v~sv~fspdg~~-Lasgs--~D---------g~I~IWdl~ 773 (927)
+++ .+.-+.|+||..... +..-..+ ...-..+.|.+-|.- |+.++ -| .++++.+++
T Consensus 182 vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~ 259 (566)
T KOG2315|consen 182 VAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ 259 (566)
T ss_pred EEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec
Confidence 333 245678999984311 1111111 111234677766653 22222 22 357888777
Q ss_pred CCCCcccccccceeeeeeeecCCCeEEE---EecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecC
Q 002407 774 AESRPSRSKSITVTHSYEHFHCQDVSVA---IPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSP 850 (927)
Q Consensus 774 s~~~~~~~~~~~~~~~~~~~~~~~v~va---vs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSP 850 (927)
.......+... .......|.+.+.-.+ ..-+..+.+++.....+..+- .++ --.+-|+|
T Consensus 260 g~s~~V~L~k~-GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~--egp---------------RN~~~fnp 321 (566)
T KOG2315|consen 260 GESVSVPLLKE-GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP--EGP---------------RNTAFFNP 321 (566)
T ss_pred CceEEEecCCC-CCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC--CCC---------------ccceEECC
Confidence 33222111111 1122233444331111 122333344443333222211 111 11234999
Q ss_pred CCCeEEEeccccccCccccccCchhhccccccCCCceecccCCCCCcccCCCCCEEEEEcC------CCcEEEeecCCCc
Q 002407 851 LNGTISSATNSYFFDRISATWPEEKLVLTARNRSPRTSLDISNGISSSISAWGMVIVTAGL------RGEIRAYQNFGLP 924 (927)
Q Consensus 851 dg~~Lasas~~~~~d~~v~~W~~e~l~~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~------DG~IrvW~~~glP 924 (927)
.|.+|+.+|-.. ..+.+.+|+.............-++ -+.|+|||.+|+||.. |.-||||+.+|-+
T Consensus 322 ~g~ii~lAGFGN-L~G~mEvwDv~n~K~i~~~~a~~tt-------~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 322 HGNIILLAGFGN-LPGDMEVWDVPNRKLIAKFKAANTT-------VFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred CCCEEEEeecCC-CCCceEEEeccchhhccccccCCce-------EEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 999999998211 3488999998754322222222122 3789999999999976 6889999999987
Q ss_pred cc
Q 002407 925 VR 926 (927)
Q Consensus 925 ~~ 926 (927)
++
T Consensus 394 l~ 395 (566)
T KOG2315|consen 394 LH 395 (566)
T ss_pred ee
Confidence 64
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.3e-09 Score=120.07 Aligned_cols=205 Identities=16% Similarity=0.206 Sum_probs=139.9
Q ss_pred ecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEE-EEEC
Q 002407 554 ALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SGSL 628 (927)
Q Consensus 554 ~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~D---gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~-sgs~ 628 (927)
+..+.....+..+...+....|+|+ .+|+.+..+ ..|++||+.+++......+...+.+++|+| +++.|+ +.+.
T Consensus 176 d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~ 254 (417)
T TIGR02800 176 DYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSK 254 (417)
T ss_pred cCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECC
Confidence 3344445566667778999999999 567666543 479999999987766555667778899999 887665 4444
Q ss_pred CC--cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECC-C--eEEEEECCCCeeeeecccccccccccCCCCCe
Q 002407 629 DA--KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYK-G--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 629 Dg--~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~D-g--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
++ .|++||+.+++......+........|+|||+.|+..+.. + .|+++|+.+++.... ..+...+
T Consensus 255 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l----------~~~~~~~ 324 (417)
T TIGR02800 255 DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL----------TFRGGYN 324 (417)
T ss_pred CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe----------ecCCCCc
Confidence 44 5899999988776666555555678999999988876653 3 588888877654322 1234456
Q ss_pred EEEEEcCCCCcEEEEEECCC---cEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC---cEEEEEC
Q 002407 704 TGFQFAPGSSSEVLVTSADS---RIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS---YVYVWKY 772 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs~Dg---~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg---~I~IWdl 772 (927)
..+.|+|++. +|+.+..++ .|.+||.......... .........|+|||++|+..+.++ .+++.+.
T Consensus 325 ~~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 325 ASPSWSPDGD-LIAFVHREGGGFNIAVMDLDGGGERVLT--DTGLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred cCeEECCCCC-EEEEEEccCCceEEEEEeCCCCCeEEcc--CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 7789999987 566666554 7888886542222111 112234568999999988877654 3445443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-08 Score=118.90 Aligned_cols=190 Identities=16% Similarity=0.127 Sum_probs=129.4
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 451 EIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~~LaSgs~D---gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
.|..|...+...+|+|||++||.+..+ ..|++|++.+++...
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----------------------------------- 228 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----------------------------------- 228 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-----------------------------------
Confidence 345577789999999999999987654 479999986653111
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEE-EEeCCC--cEEEEeCCCCcEEEE
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL-SSSMDK--TVRLWHLSSKTCLKI 603 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~-Sgs~Dg--tV~lWDl~t~~~~~~ 603 (927)
+..+...+..++|+|+ ..|+ +.+.++ .|++||+.++.....
T Consensus 229 -----------------------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l 273 (417)
T TIGR02800 229 -----------------------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL 273 (417)
T ss_pred -----------------------------------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC
Confidence 1112234456789998 4454 444444 599999998876655
Q ss_pred EecCCceEEEEEccCCCCEEEEEECC-C--cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCC---eEEEEE
Q 002407 604 FSHSDYVTCIQFNPVDDRYFISGSLD-A--KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKG---SCHLYN 677 (927)
Q Consensus 604 ~~h~~~V~~v~fsp~dg~~L~sgs~D-g--~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg---~I~IwD 677 (927)
..+........|+| +++.|+..+.. + .|.++|+.+++...+......+..+.|+|+|++|+.+..++ .|.+||
T Consensus 274 ~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d 352 (417)
T TIGR02800 274 TNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMD 352 (417)
T ss_pred CCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEe
Confidence 55555566789999 88888766543 3 58888988887665555556677889999999999988776 799999
Q ss_pred CCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC
Q 002407 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (927)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D 722 (927)
+.++...... .........|+|++..++++...+
T Consensus 353 ~~~~~~~~l~-----------~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 353 LDGGGERVLT-----------DTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCCCCeEEcc-----------CCCCCCCceECCCCCEEEEEEeCC
Confidence 9875443221 111233457999988444444433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.8e-09 Score=112.62 Aligned_cols=153 Identities=16% Similarity=0.247 Sum_probs=122.0
Q ss_pred EEEEEecCC--cEEEEEeCC--CcEEEEeCCCCcEEEEEe----------cCCceEEEEEccCC--CCEEEEEECCCcEE
Q 002407 570 VLDLSWSKS--QHLLSSSMD--KTVRLWHLSSKTCLKIFS----------HSDYVTCIQFNPVD--DRYFISGSLDAKVR 633 (927)
Q Consensus 570 V~~l~~spd--~~L~Sgs~D--gtV~lWDl~t~~~~~~~~----------h~~~V~~v~fsp~d--g~~L~sgs~Dg~I~ 633 (927)
+..|.-++. ..+++|+.. ..+.|||+.+.+.+..-. -.-.++++.|.+ . ...|++++.-+.|+
T Consensus 151 ~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR 229 (412)
T KOG3881|consen 151 LYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVR 229 (412)
T ss_pred eeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEE
Confidence 334444444 557779998 889999999885443332 223567899998 6 77899999999999
Q ss_pred EEeCCCCc-EEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 634 IWSIPERQ-VVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 634 IWDl~t~~-~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
+||.+.++ ++. +.-.+..++++...|+++++++|...|.+..||++.+++.... +.+..+.|.++..+|.
T Consensus 230 ~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~--------~kg~tGsirsih~hp~ 301 (412)
T KOG3881|consen 230 LYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG--------LKGITGSIRSIHCHPT 301 (412)
T ss_pred EecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc--------cCCccCCcceEEEcCC
Confidence 99998753 343 3344678999999999999999999999999999999876552 2578899999999998
Q ss_pred CCcEEEEEECCCcEEEEECCc
Q 002407 712 SSSEVLVTSADSRIRVVDGID 732 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD~~~ 732 (927)
.+ ++++++-|..|||+|..+
T Consensus 302 ~~-~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 302 HP-VLASCGLDRYVRIHDIKT 321 (412)
T ss_pred Cc-eEEeeccceeEEEeeccc
Confidence 77 899999999999999655
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.4e-08 Score=110.24 Aligned_cols=274 Identities=15% Similarity=0.173 Sum_probs=170.8
Q ss_pred CEEEEEEcCCCCEEEEE-----eCC-----CcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 458 SIWSIKFSLDGRYLASA-----GED-----CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 458 ~I~~vafSpdG~~LaSg-----s~D-----gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
.+.++.|||.|.||.|- -.+ ..+.+|+++++.....+..... . -++..|+.|..+.+-... +.+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q----~-~W~~qfs~dEsl~arlv~-nev 148 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQ----N-GWVPQFSIDESLAARLVS-NEV 148 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhh----c-Ccccccccchhhhhhhhc-ceE
Confidence 58899999999999873 122 3477999998554444432211 1 135666666554433211 111
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEE-----EeCCCcEEEEeCCCCc
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLS-----SSMDKTVRLWHLSSKT 599 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~S-----gs~DgtV~lWDl~t~~ 599 (927)
.++.+..-....-.-|...|+.+.++|. ..+++ .+.-..|+||.+....
T Consensus 149 -----------------------~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~ 205 (566)
T KOG2315|consen 149 -----------------------QFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG 205 (566)
T ss_pred -----------------------EEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc
Confidence 1222222111122236778999999986 33443 3555679999887332
Q ss_pred EE-----EEEecCCceEEEEEccCCCCEEEEEEC--C---------CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCE
Q 002407 600 CL-----KIFSHSDYVTCIQFNPVDDRYFISGSL--D---------AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQG 663 (927)
Q Consensus 600 ~~-----~~~~h~~~V~~v~fsp~dg~~L~sgs~--D---------g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~ 663 (927)
.- +.|-..+ =..+.|++....+|+.++. | .++++.++....+..-+...++|.+++|+|+++-
T Consensus 206 ~~~~~a~ksFFkad-kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 206 QHQPVANKSFFKAD-KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred ccchhhhccccccc-eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 22 2221222 2346777733344444433 2 4688888886666667777899999999999977
Q ss_pred EEE--EECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE--CCCcEEEEECCcceEEEEe
Q 002407 664 ALV--GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS--ADSRIRVVDGIDLVHKFKG 739 (927)
Q Consensus 664 l~t--gs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs--~Dg~I~VwD~~~~~~~~~~ 739 (927)
+++ |.+--.+.|||++.. .+.. -..++-+++-|+|.|..++++|- ..|.|-|||..+.....+.
T Consensus 285 F~VvyGfMPAkvtifnlr~~-~v~d-----------f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRGK-PVFD-----------FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred EEEEEecccceEEEEcCCCC-EeEe-----------CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 655 566788999999754 3333 23456678889999984444443 3489999997653332222
Q ss_pred ecCCcceEEEEEecCCCEEEEEEC------CCcEEEEECCCC
Q 002407 740 FRNTNSQISASLTANGRYVVSASE------DSYVYVWKYEAE 775 (927)
Q Consensus 740 ~~~~~~v~sv~fspdg~~Lasgs~------Dg~I~IWdl~s~ 775 (927)
. ...-+-+.|+|||++|+|++. |+.++||++...
T Consensus 353 ~--a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 353 K--AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred c--cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 2 223456899999999999875 788999999763
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-09 Score=115.19 Aligned_cols=264 Identities=19% Similarity=0.323 Sum_probs=169.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEE--ccCCCCCeecccccCCceeeecc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA--NGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v--~~spd~~~la~~~~~~~i~~~~~ 532 (927)
...-|.+|.|...|.+||||..+|.|.++.-..... .++ .+... ...|+-.+|
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-~ey----------~~~t~fqshepEFDYL-------------- 78 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-GEY----------NFQTEFQSHEPEFDYL-------------- 78 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccc-cce----------eeeeeeeccCcccchh--------------
Confidence 346789999999999999999999999997443221 010 00000 000110000
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCc----------
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKT---------- 599 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~---------- 599 (927)
..+ .-...|..+.|.++ ..++....|++|++|.+....
T Consensus 79 ----------------------------kSl-eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~ 129 (433)
T KOG1354|consen 79 ----------------------------KSL-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPE 129 (433)
T ss_pred ----------------------------hhh-hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccc
Confidence 000 12346888999886 458888999999999875321
Q ss_pred -------------------------EEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC----CcEEEeccC
Q 002407 600 -------------------------CLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE----RQVVDWNDL 648 (927)
Q Consensus 600 -------------------------~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t----~~~v~~~~~ 648 (927)
+.+++. |+--|++|.++. |...++++ .|=.|.+|++.- -.++....+
T Consensus 130 ~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~ 207 (433)
T KOG1354|consen 130 EGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPA 207 (433)
T ss_pred cCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEcccc
Confidence 112222 777899999998 88888776 467899999853 234444433
Q ss_pred C-----CcEEEEEECCC-CCEEEEEECCCeEEEEECCCCeeeeec------cccccccc-ccCCCCCeEEEEEcCCCCcE
Q 002407 649 H-----EMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQKS------PINLQNKK-KRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 649 ~-----~~V~sla~spd-g~~l~tgs~Dg~I~IwDl~~~~~~~~~------~i~~~~~~-~~~h~~~Vtsl~fspdg~~~ 715 (927)
. .-|++..|+|. ...|+-.+..|+|++.|++...+.... +.....+. +......|..+.|++.|. +
T Consensus 208 nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGr-y 286 (433)
T KOG1354|consen 208 NMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGR-Y 286 (433)
T ss_pred CHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCc-E
Confidence 3 46899999994 467888899999999999854332211 11100000 112235688899999986 3
Q ss_pred EEEEECCCcEEEEECC---cceEEEEeecCC-------------cceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 716 VLVTSADSRIRVVDGI---DLVHKFKGFRNT-------------NSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~---~~~~~~~~~~~~-------------~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
++ +-.=-+|+|||.. .....+..|... -.-..++|+-++.+++||+....+++|++..+.
T Consensus 287 il-sRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 287 IL-SRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EE-EeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 43 3344789999963 234444443211 112357899999999999999999999976654
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=7e-09 Score=107.37 Aligned_cols=148 Identities=12% Similarity=0.228 Sum_probs=100.5
Q ss_pred EEEEEccCCCCEEEEEEC----------CCcEEEEeC--CCCcEEEe-ccCCCcEEEEEECCCCCEEEEE--ECCCeEEE
Q 002407 611 TCIQFNPVDDRYFISGSL----------DAKVRIWSI--PERQVVDW-NDLHEMVTAACYTPDGQGALVG--SYKGSCHL 675 (927)
Q Consensus 611 ~~v~fsp~dg~~L~sgs~----------Dg~I~IWDl--~t~~~v~~-~~~~~~V~sla~spdg~~l~tg--s~Dg~I~I 675 (927)
..+.|+| .|++|+.-.. -+...||.+ ........ +.....|..++|+|+|+.|++. ..+..|.|
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 3567788 6766554332 123445544 33332222 2334569999999999987664 45679999
Q ss_pred EECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC---CCcEEEEECCcceEEEEeecCCcceEEEEEe
Q 002407 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA---DSRIRVVDGIDLVHKFKGFRNTNSQISASLT 752 (927)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~---Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fs 752 (927)
||++ .+.+.. -....++.+.|+|+|. +|++++. .|.|.+||..+........ ...+..++|+
T Consensus 88 yd~~-~~~i~~-----------~~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~Ws 152 (194)
T PF08662_consen 88 YDVK-GKKIFS-----------FGTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWS 152 (194)
T ss_pred EcCc-ccEeEe-----------ecCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEc
Confidence 9996 333333 2345678899999998 5666543 4679999987655544432 2347899999
Q ss_pred cCCCEEEEEEC------CCcEEEEECCC
Q 002407 753 ANGRYVVSASE------DSYVYVWKYEA 774 (927)
Q Consensus 753 pdg~~Lasgs~------Dg~I~IWdl~s 774 (927)
|||++|+++.. |..++||++..
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEecC
Confidence 99999999874 78899999964
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-09 Score=113.05 Aligned_cols=247 Identities=15% Similarity=0.169 Sum_probs=172.2
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC-cCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV-ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~-~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
.+.++||.+.|+....-|-..-+++.+.|.++|||--. .++.-..+ .......+.++.+.++...|..+...+.+
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI----~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI----YHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh----hhhCCCCceEeeeeccceEEEEEEecceE
Confidence 35678999999999998887889999999999999533 33322222 22334566677777777777776555544
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEec
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSH 606 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h 606 (927)
.-... +.+.. .-...+.+..|...|..+-|+-. ..+++.+.|+.+.---.+.+..+..+..
T Consensus 93 tefs~---------sedfn---------km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~ 154 (404)
T KOG1409|consen 93 TEFAL---------SEDFN---------KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF 154 (404)
T ss_pred EEEEh---------hhhhh---------hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe
Confidence 21110 00000 11344556789999999999876 8899999998876555666665554444
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCC---CcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE---RQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t---~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~ 683 (927)
....+++.|.- . +...|...|.|.+..+.. +.+....++.+.+.+++|.|....|.+|..|..+.+||+-.++-
T Consensus 155 ~~~~t~~~~d~-~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g 231 (404)
T KOG1409|consen 155 ETPASALQFDA-L--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG 231 (404)
T ss_pred eccCCCCceee-E--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc
Confidence 44444555543 2 556666667766555433 33445677789999999999999999999999999999977654
Q ss_pred eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
..-.. .+|...|..+...+.-. .+++++.||.|.+|+
T Consensus 232 ~~~el--------~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 232 TAYEL--------QGHNDKVQALSYAQHTR-QLISCGEDGGIVVWN 268 (404)
T ss_pred eeeee--------ccchhhhhhhhhhhhhe-eeeeccCCCeEEEEe
Confidence 43221 47888888888777654 799999999999998
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.8e-08 Score=115.91 Aligned_cols=209 Identities=13% Similarity=0.146 Sum_probs=137.9
Q ss_pred eecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEE-EEE
Q 002407 553 FALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SGS 627 (927)
Q Consensus 553 ~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~D---gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~-sgs 627 (927)
.+..+.....+..+...+....|+|+ .+|+..+.+ ..|.+|++.+++..........+....|+| +++.|+ +..
T Consensus 184 ~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~ 262 (430)
T PRK00178 184 SDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLS 262 (430)
T ss_pred ECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEc
Confidence 34455555666677788999999999 567665543 369999999887765544455566799999 888776 444
Q ss_pred CCC--cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEEC-CC--eEEEEECCCCeeeeecccccccccccCCCCC
Q 002407 628 LDA--KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSY-KG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (927)
Q Consensus 628 ~Dg--~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~-Dg--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (927)
.++ .|.+||+.+++...............|+|||+.|+..+. +| .|+++++.+++..... .....
T Consensus 263 ~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt----------~~~~~ 332 (430)
T PRK00178 263 KDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT----------FVGNY 332 (430)
T ss_pred cCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee----------cCCCC
Confidence 555 588889999887766666666777899999998877664 33 5888888777643321 11122
Q ss_pred eEEEEEcCCCCcEEEEEECCC--cEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECC-C--cEEEEECCC
Q 002407 703 ITGFQFAPGSSSEVLVTSADS--RIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASED-S--YVYVWKYEA 774 (927)
Q Consensus 703 Vtsl~fspdg~~~Llsgs~Dg--~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D-g--~I~IWdl~s 774 (927)
.....|+|++..++++...++ .|.+||........... ........|+|||++|+..+.+ + .|+++++..
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 345689999985444443344 47788864432221111 1122356899999999877654 3 466666643
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.7e-08 Score=114.05 Aligned_cols=198 Identities=14% Similarity=0.109 Sum_probs=127.6
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 451 EIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~~LaSgs~D---gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
.+..|...+...+|+|||++||..+.+ ..|.+|++.+++....
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l---------------------------------- 238 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI---------------------------------- 238 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc----------------------------------
Confidence 345677889999999999999877644 3588888866532110
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEE-EEeCCC--cEEEEeCCCCcEEEE
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL-SSSMDK--TVRLWHLSSKTCLKI 603 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~-Sgs~Dg--tV~lWDl~t~~~~~~ 603 (927)
....+.+....|+|+ .+|+ +.+.++ .|++||+.+++....
T Consensus 239 ------------------------------------~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l 282 (430)
T PRK00178 239 ------------------------------------TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV 282 (430)
T ss_pred ------------------------------------cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEc
Confidence 001122335788988 4454 444454 588889998876655
Q ss_pred EecCCceEEEEEccCCCCEEEEEEC-CC--cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCC---eEEEEE
Q 002407 604 FSHSDYVTCIQFNPVDDRYFISGSL-DA--KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKG---SCHLYN 677 (927)
Q Consensus 604 ~~h~~~V~~v~fsp~dg~~L~sgs~-Dg--~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg---~I~IwD 677 (927)
..+........|+| +++.|+..+. ++ .|.++++.+++...............|+|+|++|+....++ .|.+||
T Consensus 283 t~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~d 361 (430)
T PRK00178 283 TNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQD 361 (430)
T ss_pred ccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEE
Confidence 44555667789999 8887766654 33 47788888887655433233345678999999998876542 588899
Q ss_pred CCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc--EEEEEC
Q 002407 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR--IRVVDG 730 (927)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~--I~VwD~ 730 (927)
+.++...... .........|+|+|..++++...++. |.+++.
T Consensus 362 l~tg~~~~lt-----------~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 362 LQRGSVRILT-----------DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred CCCCCEEEcc-----------CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 9887643321 11112245799999855455444443 555554
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.8e-07 Score=97.46 Aligned_cols=153 Identities=13% Similarity=0.236 Sum_probs=115.1
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEeCC-CCcEEEEEe---cCCceEEEEEccCCCCE-EEE-EECCCcEEEEeCCC
Q 002407 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLS-SKTCLKIFS---HSDYVTCIQFNPVDDRY-FIS-GSLDAKVRIWSIPE 639 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~-t~~~~~~~~---h~~~V~~v~fsp~dg~~-L~s-gs~Dg~I~IWDl~t 639 (927)
...+|.++.+.++..++ -..+.|+||... ..+.++.+. ....+.++ .|..... |+. |-.-|.|.|-|+..
T Consensus 93 f~~~I~~V~l~r~riVv--vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~--~~~~~k~~LafPg~k~GqvQi~dL~~ 168 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDRIVV--VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSL--CPTSNKSLLAFPGFKTGQVQIVDLAS 168 (346)
T ss_pred eccceeeEEEcCCeEEE--EecCeEEEEEcCCChhheeeeecccCCCceEee--cCCCCceEEEcCCCccceEEEEEhhh
Confidence 45678888887764333 346789999987 445565554 23333333 3323333 332 34468899999987
Q ss_pred CcE---EEeccCCCcEEEEEECCCCCEEEEEECCCe-EEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 640 RQV---VDWNDLHEMVTAACYTPDGQGALVGSYKGS-CHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 640 ~~~---v~~~~~~~~V~sla~spdg~~l~tgs~Dg~-I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
.+. .....|...|.+++++-+|..+|+++..|+ |+|||..++..+.++.- -.....|++++|+|+.. +
T Consensus 169 ~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR-------G~d~A~iy~iaFSp~~s-~ 240 (346)
T KOG2111|consen 169 TKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR-------GVDRADIYCIAFSPNSS-W 240 (346)
T ss_pred cCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec-------CCchheEEEEEeCCCcc-E
Confidence 655 667888999999999999999999999998 89999999999887542 24556799999999876 8
Q ss_pred EEEEECCCcEEEEEC
Q 002407 716 VLVTSADSRIRVVDG 730 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~ 730 (927)
|++++..|+|+||..
T Consensus 241 LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSL 255 (346)
T ss_pred EEEEcCCCeEEEEEe
Confidence 999999999999974
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-08 Score=114.51 Aligned_cols=269 Identities=14% Similarity=0.128 Sum_probs=178.7
Q ss_pred ceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC
Q 002407 411 RRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN--GSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 411 ~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~--~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~ 488 (927)
...+.++.|++.++++|...-.|++|+...-.+ .+.-|. ..|.-.-++.|-..++---.|.+|-+..--..
T Consensus 54 st~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-------KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 54 STRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-------KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred cceeEecCCCcEEEEecccCCceEEEEccccee-------eeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 344667889999999999999999998553222 123342 34555555666566666667887766532111
Q ss_pred cccceeecccccCccccEEEEccC-CCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCC
Q 002407 489 ERKGELLEKQEDGHLNMLLLANGS-PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL 567 (927)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~s-pd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~ 567 (927)
.....+ ...-..+.++ +...++..+...... .+.-..+..+..|....
T Consensus 127 hy~~RI--------P~~GRDm~y~~~scDly~~gsg~evY-----------------------RlNLEqGrfL~P~~~~~ 175 (703)
T KOG2321|consen 127 HYRTRI--------PKFGRDMKYHKPSCDLYLVGSGSEVY-----------------------RLNLEQGRFLNPFETDS 175 (703)
T ss_pred eeeeec--------CcCCccccccCCCccEEEeecCcceE-----------------------EEEcccccccccccccc
Confidence 000000 0000111111 111122221111111 11112455666677777
Q ss_pred CCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-------cCC-----ceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 568 DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-------HSD-----YVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-------h~~-----~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
+.++++..++- ++|++|+.+|.|.+||.++...+.++. |.. .|+++.|.. ++-.+++|..+|.|.|
T Consensus 176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~i 254 (703)
T KOG2321|consen 176 GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLI 254 (703)
T ss_pred ccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEE
Confidence 89999999997 888899999999999999887776664 222 399999997 7999999999999999
Q ss_pred EeCCCCcEEEeccCC--CcEEEEEECCCCC-EEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 635 WSIPERQVVDWNDLH--EMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 635 WDl~t~~~v~~~~~~--~~V~sla~spdg~-~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
||+++.+.+....|. -+|..+.|.+.+. -.++......++|||-.+++....+ .....++.+++.|+
T Consensus 255 yDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asi----------Ept~~lND~C~~p~ 324 (703)
T KOG2321|consen 255 YDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASI----------EPTSDLNDFCFVPG 324 (703)
T ss_pred EEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeec----------cccCCcCceeeecC
Confidence 999999888777665 4788899977532 3344445667999999999887664 34556899999998
Q ss_pred CCcEEEEEECCCcEEEEE
Q 002407 712 SSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD 729 (927)
+. +++++-.++.+..|=
T Consensus 325 sG-m~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 325 SG-MFFTANESSKMHTYY 341 (703)
T ss_pred Cc-eEEEecCCCcceeEE
Confidence 76 888888887776654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.8e-08 Score=114.33 Aligned_cols=168 Identities=15% Similarity=0.165 Sum_probs=103.1
Q ss_pred EEEecCC-cEEE-EEeCCCc--EEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEEC-CC--cEEEEeCCCCcEEE
Q 002407 572 DLSWSKS-QHLL-SSSMDKT--VRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL-DA--KVRIWSIPERQVVD 644 (927)
Q Consensus 572 ~l~~spd-~~L~-Sgs~Dgt--V~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~-Dg--~I~IWDl~t~~~v~ 644 (927)
...|+|+ ..|+ +.+.++. |++||+.+++......+........|+| +++.|+..+. ++ .|.++|+.+++...
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSR 344 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 4688998 4454 4566664 8888998887665555666678899999 8887776554 33 46777888777655
Q ss_pred eccCCCcEEEEEECCCCCEEEEEECC-C--eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 645 WNDLHEMVTAACYTPDGQGALVGSYK-G--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l~tgs~D-g--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
...........+|+|||++|+..+.+ + .|.++|+.++....... . .......|+|++..++++...
T Consensus 345 Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~---------~--~~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 345 LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS---------T--RLDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC---------C--CCCCCceECCCCCEEEEEEec
Confidence 43222334457899999998886653 3 46667887776432211 1 111234799999855555555
Q ss_pred CCc--EEEEECC-cceEEEEeecCCcceEEEEEec
Q 002407 722 DSR--IRVVDGI-DLVHKFKGFRNTNSQISASLTA 753 (927)
Q Consensus 722 Dg~--I~VwD~~-~~~~~~~~~~~~~~v~sv~fsp 753 (927)
++. |++++.. .....+.. ....+...+|+|
T Consensus 414 ~g~~~l~~~~~~G~~~~~l~~--~~g~~~~p~Wsp 446 (448)
T PRK04792 414 QGKQVLAAVSIDGRFKARLPA--GQGEVKSPAWSP 446 (448)
T ss_pred CCceEEEEEECCCCceEECcC--CCCCcCCCccCC
Confidence 554 5666642 22222222 223345556665
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.4e-10 Score=136.63 Aligned_cols=230 Identities=17% Similarity=0.250 Sum_probs=171.7
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeec
Q 002407 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~ 531 (927)
++.|-..|.+|.=+|...+.+||+.||.|++|....++.+..+.. .+. ..+..+.|+.+|........++.+
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt---~g~-s~vtr~~f~~qGnk~~i~d~dg~l---- 2275 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT---AGN-SRVTRSRFNHQGNKFGIVDGDGDL---- 2275 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec---cCc-chhhhhhhcccCCceeeeccCCce----
Confidence 345677899999999999999999999999999998887766542 223 667778888888888777777776
Q ss_pred ccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEE---eCCCcEEEEeCCCCc---EEEEEe
Q 002407 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSS---SMDKTVRLWHLSSKT---CLKIFS 605 (927)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sg---s~DgtV~lWDl~t~~---~~~~~~ 605 (927)
.+|....++....+.|.....+..|-. ..++++ +.++.+.+||.--.. ++. ..
T Consensus 2276 -------------------~l~q~~pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~ 2334 (2439)
T KOG1064|consen 2276 -------------------SLWQASPKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TC 2334 (2439)
T ss_pred -------------------eecccCCcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceee-ee
Confidence 566667788889999999999998876 445554 347889999965332 233 34
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
|...++++++-| ...+|++|+.+|.|++||++..+++..+.. +. ...+|++|+..|.|+||++....++.
T Consensus 2335 H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2335 HDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred cCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhh
Confidence 999999999999 999999999999999999999887765443 33 56689999999999999999988777
Q ss_pred ecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
.++.......+ .....++..-+-...|.+++.|++
T Consensus 2405 ~~p~e~ak~gf----Fr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2405 TFPSEHAKQGF----FRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred cCchhhcccch----hhhcCceeeeccCceEEEecCCCC
Confidence 76543311111 112223322222236778877763
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.2e-08 Score=105.17 Aligned_cols=275 Identities=17% Similarity=0.228 Sum_probs=167.7
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCC------------CCEEEEEEcCCCC--EEEEEeCCCcEEEEec
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN------------GSIWSIKFSLDGR--YLASAGEDCVIHVWQV 485 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~------------~~I~~vafSpdG~--~LaSgs~DgtVrVWdv 485 (927)
...++++|..+|+|-+|......-.......+++.|. ..|..+.|.++++ .++..+.|.+|++|.+
T Consensus 36 ~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi 115 (433)
T KOG1354|consen 36 YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKI 115 (433)
T ss_pred ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeee
Confidence 4467899999999999975432211111223455554 4688899998765 5666678999999998
Q ss_pred CcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEE-c
Q 002407 486 VESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-Q 564 (927)
Q Consensus 486 ~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l-~ 564 (927)
........-......+....+..+ .......... .+...|.+.+ .
T Consensus 116 ~er~~k~~~~~~~~~~~~~~~~~l--------------------------------r~p~~~~~~~--~vea~prRv~aN 161 (433)
T KOG1354|consen 116 RERGSKKEGYNLPEEGPPGTITSL--------------------------------RLPVEGRHDL--EVEASPRRVYAN 161 (433)
T ss_pred eccccccccccccccCCCCcccee--------------------------------eceeeccccc--eeeeeeeeeccc
Confidence 765433211100000000000000 0000000000 0011222333 4
Q ss_pred cCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCC-CcEEEEEe--------cCCceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 565 GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSS-KTCLKIFS--------HSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 565 gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t-~~~~~~~~--------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
+|+--|.+|.+..|+..+.+..|=.|.+|+++- .+...+.. .+.-|++..|+|..-+.|+-.+..|+|++-
T Consensus 162 aHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred cceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 688899999999996666667788999999873 23322221 345689999999878889989999999999
Q ss_pred eCCCCcEEE----ecc-------------CCCcEEEEEECCCCCEEEEEECCCeEEEEECC-CCeeeeeccccccccccc
Q 002407 636 SIPERQVVD----WND-------------LHEMVTAACYTPDGQGALVGSYKGSCHLYNTS-ENKLQQKSPINLQNKKKR 697 (927)
Q Consensus 636 Dl~t~~~v~----~~~-------------~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~-~~~~~~~~~i~~~~~~~~ 697 (927)
|++...+-. ++. .-..|..+.|+++|+++++-. --+|++||+. ..+.+.++++....+.+.
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKL 320 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHH
Confidence 998543211 111 113588899999999998764 3689999994 444555544322211110
Q ss_pred ---CCCC---CeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 698 ---SHQR---KITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 698 ---~h~~---~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
.... .-..++|+.++. .+++|+....+++|+.
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~-~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDS-YVMTGSYNNVFRVFNL 358 (433)
T ss_pred HHHhhccchhheeEEEEcCCcc-eEecccccceEEEecC
Confidence 1111 224567888765 8999999999999994
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.1e-08 Score=114.95 Aligned_cols=207 Identities=15% Similarity=0.199 Sum_probs=132.7
Q ss_pred ecCCCceEEEccCCCCEEEEEecCC-cEEEEEeC-CC--cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEE-EEC
Q 002407 554 ALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM-DK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFIS-GSL 628 (927)
Q Consensus 554 ~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~-Dg--tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~s-gs~ 628 (927)
+..+.....+..+...+....|+|| .+|+..+. ++ .|++||+.+++..............+|+| +++.|+. ...
T Consensus 204 d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP-DG~~La~~~~~ 282 (448)
T PRK04792 204 DYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP-DGKKLALVLSK 282 (448)
T ss_pred eCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC-CCCEEEEEEeC
Confidence 4444444556667778899999999 55665543 33 58999999887654433344456789999 8887764 566
Q ss_pred CCc--EEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEEC-CC--eEEEEECCCCeeeeecccccccccccCCCCCe
Q 002407 629 DAK--VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSY-KG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 629 Dg~--I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~-Dg--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
++. |.+||+.+++......+.......+|+|||+.|+..+. ++ .|+++|+.+++..... ......
T Consensus 283 ~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt----------~~g~~~ 352 (448)
T PRK04792 283 DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT----------FEGEQN 352 (448)
T ss_pred CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe----------cCCCCC
Confidence 665 88889988887776665566778899999998877654 33 4777788776643321 111223
Q ss_pred EEEEEcCCCCcEEEEEECCCc--EEEEECCcce-EEEEeecCCcceEEEEEecCCCEEEEEECC-Cc--EEEEECCC
Q 002407 704 TGFQFAPGSSSEVLVTSADSR--IRVVDGIDLV-HKFKGFRNTNSQISASLTANGRYVVSASED-SY--VYVWKYEA 774 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs~Dg~--I~VwD~~~~~-~~~~~~~~~~~v~sv~fspdg~~Lasgs~D-g~--I~IWdl~s 774 (927)
....|+|+++.++++...++. |.++|..... ..+.. ........|+|||++|+..+.+ +. |++++.+.
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~---~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS---TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 456899999855555554554 4445643322 22221 1122345899999988776643 33 67777643
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.3e-08 Score=111.08 Aligned_cols=139 Identities=18% Similarity=0.218 Sum_probs=120.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTA 654 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~s 654 (927)
..++-|...|.|.++++..++....+. |.+.|+++.++. +-..|.+++.|+.+.+|+...+..+. +...+..+.+
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s 149 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS 149 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence 468888999999999999999988886 999999999998 78889999999999999999988876 4555678999
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC-----CCcEEEEEECCCcEEEEE
Q 002407 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG-----SSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 655 la~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd-----g~~~Llsgs~Dg~I~VwD 729 (927)
++++|||+.+++++ +.|++||+++.+.+..+ .+|..+|.+++|... |..+|.+...+..|.+|-
T Consensus 150 l~is~D~~~l~~as--~~ik~~~~~~kevv~~f---------tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 150 LCISPDGKILLTAS--RQIKVLDIETKEVVITF---------TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred EEEcCCCCEEEecc--ceEEEEEccCceEEEEe---------cCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 99999999999986 68999999999998886 499999999999876 565555566777788885
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.4e-08 Score=107.02 Aligned_cols=287 Identities=17% Similarity=0.202 Sum_probs=177.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeC-----------CCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccc
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGE-----------DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH 522 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~-----------DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~ 522 (927)
.|.+ |.-+.|||+.+||+|-+. -..++|||+.+|..+..+... ......-....||.|.+++|.-.
T Consensus 248 ~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~--~~~~~~WP~frWS~DdKy~Arm~ 324 (698)
T KOG2314|consen 248 YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI--KSPYLKWPIFRWSHDDKYFARMT 324 (698)
T ss_pred cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceecc--CCCccccceEEeccCCceeEEec
Confidence 3765 889999999999999753 257999999999888776432 22233344678888888887654
Q ss_pred cCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeC-----CCcEEEEeCC
Q 002407 523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM-----DKTVRLWHLS 596 (927)
Q Consensus 523 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~-----DgtV~lWDl~ 596 (927)
.+... .... ..+.-+..+.+ .-..|....|+|. ..||--.. -..+.|-.+.
T Consensus 325 ~~sis-IyEt-----------------psf~lld~Ksl-----ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evP 381 (698)
T KOG2314|consen 325 GNSIS-IYET-----------------PSFMLLDKKSL-----KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVP 381 (698)
T ss_pred cceEE-EEec-----------------Cceeeeccccc-----CCccccCcccCCCcceEEEEcccccCCcceEEEEecC
Confidence 43221 1100 01111111211 2345777889997 44443322 1346677777
Q ss_pred CCcEEEEEe-cCCceEEEEEccCCCCEEEEEE----------CCCcEEEEeCCCCc-EEEeccCCCcEEEEEECCCCCEE
Q 002407 597 SKTCLKIFS-HSDYVTCIQFNPVDDRYFISGS----------LDAKVRIWSIPERQ-VVDWNDLHEMVTAACYTPDGQGA 664 (927)
Q Consensus 597 t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs----------~Dg~I~IWDl~t~~-~v~~~~~~~~V~sla~spdg~~l 664 (927)
+++.+++-. +.-.=..+.|-. +|.+|+.-- .-..+-|+.++... .+......+.|...+|-|.|..+
T Consensus 382 s~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF 460 (698)
T KOG2314|consen 382 SKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKF 460 (698)
T ss_pred ccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeE
Confidence 777666554 222223345555 677776531 11235666666654 34567778899999999999887
Q ss_pred EEEEC---CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE--ECCCcEEEEECCcceEEEEe
Q 002407 665 LVGSY---KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT--SADSRIRVVDGIDLVHKFKG 739 (927)
Q Consensus 665 ~tgs~---Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg--s~Dg~I~VwD~~~~~~~~~~ 739 (927)
++-+. ..++.+|-+.+......+.. .-.....+.+.|+|.|..+++++ +..|.+.++|+.-...+...
T Consensus 461 ~vi~g~~~k~tvsfY~~e~~~~~~~lVk-------~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~ 533 (698)
T KOG2314|consen 461 AVISGNTVKNTVSFYAVETNIKKPSLVK-------ELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA 533 (698)
T ss_pred EEEEccccccceeEEEeecCCCchhhhh-------hhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc
Confidence 77543 35689998875221111110 12235577899999998544443 56899999996532222223
Q ss_pred ecCCcceEEEEEecCCCEEEEEEC------CCcEEEEECCC
Q 002407 740 FRNTNSQISASLTANGRYVVSASE------DSYVYVWKYEA 774 (927)
Q Consensus 740 ~~~~~~v~sv~fspdg~~Lasgs~------Dg~I~IWdl~s 774 (927)
+......+.+.|.|.|+|+++++. |.--+||++..
T Consensus 534 ~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 534 SPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred CccccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 333445667899999999999875 44567787765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.7e-08 Score=112.44 Aligned_cols=252 Identities=17% Similarity=0.238 Sum_probs=170.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~ 534 (927)
......|+.|+....|+|.||.||.++|-.+.+........ + ++..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~-------------------g--laa~------------- 58 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKS-------------------G--LAAA------------- 58 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccc-------------------c--cccc-------------
Confidence 34567899999999999999999999999887653221110 0 0000
Q ss_pred cccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEE---ecCCce
Q 002407 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF---SHSDYV 610 (927)
Q Consensus 535 ~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~---~h~~~V 610 (927)
. +-..-+++.||.+.|.-+.|..+ +.|-|+..+|.|.+|-+-.+.....+ ...+.|
T Consensus 59 ---------s-----------nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV 118 (1189)
T KOG2041|consen 59 ---------S-----------NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVV 118 (1189)
T ss_pred ---------c-----------ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEE
Confidence 0 00122467899999999999987 77888999999999998877644332 256779
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccc
Q 002407 611 TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN 690 (927)
Q Consensus 611 ~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~ 690 (927)
.++.|+. +|..|+....||.|.+=.+...++-...-.......+.|++|.+.++.+-..|.+++||...+-.. ++...
T Consensus 119 ~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~-Kl~~~ 196 (1189)
T KOG2041|consen 119 VSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFER-KLEKD 196 (1189)
T ss_pred EEEEEcC-CCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHH-hhhhc
Confidence 9999999 999999999999998877765544321111224557899999999999999999999998653211 11100
Q ss_pred c--c-cccccCCCCCeEEEEEc--------CCCCcEEEEEECCCcEEEEECCc-ceEEEEeecCCcceEEEEEecCCCEE
Q 002407 691 L--Q-NKKKRSHQRKITGFQFA--------PGSSSEVLVTSADSRIRVVDGID-LVHKFKGFRNTNSQISASLTANGRYV 758 (927)
Q Consensus 691 ~--~-~~~~~~h~~~Vtsl~fs--------pdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~L 758 (927)
. . ..........|..+.|. |+.+ .|+++...|.+.|-...+ ....+.. ..-.+..+.|+++|..|
T Consensus 197 c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vL 273 (1189)
T KOG2041|consen 197 CEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVL 273 (1189)
T ss_pred eEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCCcEE
Confidence 0 0 00011223335556654 3444 799999999998875322 1111111 12457789999999999
Q ss_pred EEEECCC
Q 002407 759 VSASEDS 765 (927)
Q Consensus 759 asgs~Dg 765 (927)
+.++.+.
T Consensus 274 AvcG~~~ 280 (1189)
T KOG2041|consen 274 AVCGNDS 280 (1189)
T ss_pred EEccCcc
Confidence 9998754
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.2e-09 Score=123.57 Aligned_cols=198 Identities=18% Similarity=0.254 Sum_probs=150.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccc
Q 002407 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (927)
Q Consensus 457 ~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~ 536 (927)
+.|....+.-+.+.++.+..+..+-+||...+....+++. ...........+-.+++..+++++..-+.+..+...
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~-~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~--- 163 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQS-DERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH--- 163 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCC-CceEEEEeEEEEeccCcEEEEEeccccccEEEEecc---
Confidence 4444466666788899999999999999988766655431 112222333445566676777776655555332211
Q ss_pred cccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEE--EEecCCceEEE
Q 002407 537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK--IFSHSDYVTCI 613 (927)
Q Consensus 537 ~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~--~~~h~~~V~~v 613 (927)
...+++ .+.||.+.|..+.|+-+ .++++.|+|.++|+|++++.+... .|.|+..|+.+
T Consensus 164 ------------------~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~ 224 (967)
T KOG0974|consen 164 ------------------EDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWAC 224 (967)
T ss_pred ------------------ccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEE
Confidence 122333 68899999999999998 789999999999999999987764 56799999999
Q ss_pred EEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC-CcEEEEEECCCCCEEEEEECCCeEEEEECCC
Q 002407 614 QFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 614 ~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~-~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~ 680 (927)
.|.| + ++++++.|.+.++|+....++.....|. ..+..++..++...+++++.|+.+++|++..
T Consensus 225 ~~~~-n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 225 CFLP-N--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred Eecc-c--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9998 4 8999999999999987665555444443 5799999999999999999999999999864
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-08 Score=103.62 Aligned_cols=273 Identities=15% Similarity=0.144 Sum_probs=176.0
Q ss_pred CceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcC---CCC-EEEEEeCCCcEEEEecCcCcccceeecccccCcc-
Q 002407 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL---DGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHL- 503 (927)
Q Consensus 429 ~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp---dG~-~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~- 503 (927)
.-|++.+|+....++..+-..|. --+..+..|.|.- +|. .|+-+-.+|.|.++..........+.........
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~--~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~ 121 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQC--TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISV 121 (339)
T ss_pred eccceEEEeecccccCccceeee--ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhh
Confidence 34677888777666665433332 2345677788864 555 5677778999999988766554444321111111
Q ss_pred ccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEE
Q 002407 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHL 581 (927)
Q Consensus 504 ~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L 581 (927)
....++.|++-+..+++....+.+.... .-...-+.++.+++|.-+++-..|+.. +.+
T Consensus 122 ~~~lslD~~~~~~~i~vs~s~G~~~~v~--------------------~t~~~le~vq~wk~He~E~Wta~f~~~~pnlv 181 (339)
T KOG0280|consen 122 VEALSLDISTSGTKIFVSDSRGSISGVY--------------------ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLV 181 (339)
T ss_pred eeeeEEEeeccCceEEEEcCCCcEEEEe--------------------cceeeeeecccccccceeeeeeecccCCCceE
Confidence 1245667777776666665555442100 000111345578899999999999865 789
Q ss_pred EEEeCCCcEEEEeCC-CCcEEEEE--ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEEeccCCCcEEEEEE
Q 002407 582 LSSSMDKTVRLWHLS-SKTCLKIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDWNDLHEMVTAACY 657 (927)
Q Consensus 582 ~Sgs~DgtV~lWDl~-t~~~~~~~--~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~~~~~~~~V~sla~ 657 (927)
.+|+.|+.+..||++ .++.+..- .|...|.+|.-+|..+.+|++|+.|..|++||.++ ++.+......+.|+.+..
T Consensus 182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~ 261 (339)
T KOG0280|consen 182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKH 261 (339)
T ss_pred EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEe
Confidence 999999999999999 44444432 29999999999997889999999999999999984 677766666789999999
Q ss_pred CCCCC-EEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE-CCCcEE-EE
Q 002407 658 TPDGQ-GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS-ADSRIR-VV 728 (927)
Q Consensus 658 spdg~-~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs-~Dg~I~-Vw 728 (927)
+|.-. .+++++.-.-.+|-++..+....... ....+.|..-++.-.|... ..+|++++ .|..|+ +|
T Consensus 262 ~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~----~~s~~~hdSl~YG~DWd~~-~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 262 HPEIFHRLLAACMHNGAKILDSSDKVLEFQIV----LPSDKIHDSLCYGGDWDSK-DSFLATCSFYDKKIRQLW 330 (339)
T ss_pred cchhhhHHHHHHHhcCceEEEecccccchhee----eeccccccceeeccccccc-cceeeeeeccccceeeee
Confidence 99433 34445555557777776655441111 1112456666666666433 22566654 444433 44
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-07 Score=103.26 Aligned_cols=319 Identities=17% Similarity=0.175 Sum_probs=189.2
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC---------------
Q 002407 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA--------------- 630 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg--------------- 630 (927)
..-++...+|||.+.++....-..|.+|.-.....+..+.| ..|..+.|+| .++||.+-+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~-~~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRH-PDVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhheeeeec-CCceecccCc-ccceeeeeccCCccChhhccCCccccC
Confidence 44578889999998877777778899999888876666665 4589999999 999999976543
Q ss_pred cEEEEeCCCCcEEEeccCCC-c--EE-EEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEE
Q 002407 631 KVRIWSIPERQVVDWNDLHE-M--VT-AACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGF 706 (927)
Q Consensus 631 ~I~IWDl~t~~~v~~~~~~~-~--V~-sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl 706 (927)
.+.+||+.++.++..+.... . .. -+.|+-+.++++-- ....++|+++ +...... .+ + ......|..+
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~-p~----~--~lr~~gi~dF 179 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEH-PF----K--NLRPVGILDF 179 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccC-ch----h--hccccceeeE
Confidence 49999999999987554432 1 23 67888888776544 3457999997 3333211 10 0 1223568889
Q ss_pred EEcCCCCc-EEEE-----EECCCcEEEEECCc--ceEEEEeecCCcceEEEEEecCCCEEEEEE-----------CCCcE
Q 002407 707 QFAPGSSS-EVLV-----TSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANGRYVVSAS-----------EDSYV 767 (927)
Q Consensus 707 ~fspdg~~-~Lls-----gs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~Lasgs-----------~Dg~I 767 (927)
.|+|.+.. .|+. ....++++||.... .+...... ...-..+.|.+.|++|+.-- ...++
T Consensus 180 sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf--k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnL 257 (561)
T COG5354 180 SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF--KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNL 257 (561)
T ss_pred EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE--eecccEEEEecCCceEEEEEEEeeecccceeccceE
Confidence 99997432 2332 35678899998532 11111111 12234578889998876431 13568
Q ss_pred EEEECCCCCCcccccccceeeeeeeecCC--Ce-EEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcc
Q 002407 768 YVWKYEAESRPSRSKSITVTHSYEHFHCQ--DV-SVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSAT 844 (927)
Q Consensus 768 ~IWdl~s~~~~~~~~~~~~~~~~~~~~~~--~v-~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~ 844 (927)
+|+++.....+... ..........|.+. .. .+...-+....+.+..++. ... .+..+. .
T Consensus 258 yl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl-~~~----~Pe~~r------------N 319 (561)
T COG5354 258 YLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL-RFY----FPEQKR------------N 319 (561)
T ss_pred EEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccce-EEe----cCCccc------------c
Confidence 99998854333221 11111111122111 11 1111222223333333331 111 111111 1
Q ss_pred eeeecCCCCeEEEeccccccC--ccccccCch-hhccccccCCCceecccCCCCCcccCCCCCEEEEEcC------CCcE
Q 002407 845 GYTNSPLNGTISSATNSYFFD--RISATWPEE-KLVLTARNRSPRTSLDISNGISSSISAWGMVIVTAGL------RGEI 915 (927)
Q Consensus 845 ~~~fSPdg~~Lasas~~~~~d--~~v~~W~~e-~l~~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~------DG~I 915 (927)
.+.|||.++++..++ |.. +.+.+|+.. ++........+-++ -+-|||||+++-|+-. |..|
T Consensus 320 T~~fsp~~r~il~ag---F~nl~gni~i~~~~~rf~~~~~~~~~n~s-------~~~wspd~qF~~~~~ts~k~~~Dn~i 389 (561)
T COG5354 320 TIFFSPHERYILFAG---FDNLQGNIEIFDPAGRFKVAGAFNGLNTS-------YCDWSPDGQFYDTDTTSEKLRVDNSI 389 (561)
T ss_pred cccccCcccEEEEec---CCccccceEEeccCCceEEEEEeecCCce-------EeeccCCceEEEecCCCcccccCcce
Confidence 134999999999987 322 567778754 22111111111111 3679999999999853 7889
Q ss_pred EEeecCCCcc
Q 002407 916 RAYQNFGLPV 925 (927)
Q Consensus 916 rvW~~~glP~ 925 (927)
+||+.+|-++
T Consensus 390 ~l~~v~g~~~ 399 (561)
T COG5354 390 KLWDVYGAKV 399 (561)
T ss_pred EEEEecCchh
Confidence 9999999764
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.2e-06 Score=91.46 Aligned_cols=274 Identities=12% Similarity=0.202 Sum_probs=173.4
Q ss_pred eEEEEeccC--cccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCcCcccceeecccccCcccc
Q 002407 431 VRVRQYGKS--CKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNM 505 (927)
Q Consensus 431 ~~V~i~~~~--s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~D---gtVrVWdv~~~~~~~~l~~~~~~~~~~~ 505 (927)
.-|..|+.. ++++.. ..+-++.+.++-|+|+|++++|.++-.+ |.|-.|.++...-..+++.
T Consensus 16 ~gI~v~~ld~~~g~l~~----~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln--------- 82 (346)
T COG2706 16 QGIYVFNLDTKTGELSL----LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN--------- 82 (346)
T ss_pred CceEEEEEeCcccccch----hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee---------
Confidence 345555544 333333 2345788899999999999999998654 6666666653211111100
Q ss_pred EEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCc-EEEEE
Q 002407 506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ-HLLSS 584 (927)
Q Consensus 506 v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~-~L~Sg 584 (927)
...+.++ +-+.+++++++ +|+++
T Consensus 83 ------------------------------------------------------~~~~~g~--~p~yvsvd~~g~~vf~A 106 (346)
T COG2706 83 ------------------------------------------------------RQTLPGS--PPCYVSVDEDGRFVFVA 106 (346)
T ss_pred ------------------------------------------------------ccccCCC--CCeEEEECCCCCEEEEE
Confidence 0001111 12667888884 56666
Q ss_pred eC-CCcEEEEeCCC-Cc---EEEEEecCCc----------eEEEEEccCCCCEEEEEEC-CCcEEEEeCCCCcEEE----
Q 002407 585 SM-DKTVRLWHLSS-KT---CLKIFSHSDY----------VTCIQFNPVDDRYFISGSL-DAKVRIWSIPERQVVD---- 644 (927)
Q Consensus 585 s~-DgtV~lWDl~t-~~---~~~~~~h~~~----------V~~v~fsp~dg~~L~sgs~-Dg~I~IWDl~t~~~v~---- 644 (927)
.. -+.|.++-++. |. .+..+.|... +....|.| ++++|++... -..|.+|++..+++..
T Consensus 107 nY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~ 185 (346)
T COG2706 107 NYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPA 185 (346)
T ss_pred EccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCcccccccc
Confidence 54 57899998865 33 2344456666 88999999 9999988765 2359999999887643
Q ss_pred eccCCCcEEEEEECCCCCEEEEEEC-CCeEEEEECCCC--eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 645 WNDLHEMVTAACYTPDGQGALVGSY-KGSCHLYNTSEN--KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l~tgs~-Dg~I~IwDl~~~--~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
..........|.|+|++++..+.+. +++|.+|..... +......+...... .........|.++++|+.+.++--.
T Consensus 186 ~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d-F~g~~~~aaIhis~dGrFLYasNRg 264 (346)
T COG2706 186 EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED-FTGTNWAAAIHISPDGRFLYASNRG 264 (346)
T ss_pred ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc-cCCCCceeEEEECCCCCEEEEecCC
Confidence 2344467899999999999877655 889999998873 33222222111111 2344567788999999843333334
Q ss_pred CCcEEEEECCc---ceEEEEee-cCCcceEEEEEecCCCEEEEEECCC-cEEEEECCCC
Q 002407 722 DSRIRVVDGID---LVHKFKGF-RNTNSQISASLTANGRYVVSASEDS-YVYVWKYEAE 775 (927)
Q Consensus 722 Dg~I~VwD~~~---~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg-~I~IWdl~s~ 775 (927)
...|.+|.... .+...... .+......+.|++.|++|+++..++ +|.+|.++..
T Consensus 265 ~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 265 HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 45788886322 12222222 2333357889999999999998654 5999988754
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.3e-06 Score=95.59 Aligned_cols=283 Identities=16% Similarity=0.175 Sum_probs=160.6
Q ss_pred EEEEeCC----CcEEEEeC--CCCcEE--EEEecCCceEEEEEccCCCCEEEEEEC----CCcEEEEeCCC--CcEE--E
Q 002407 581 LLSSSMD----KTVRLWHL--SSKTCL--KIFSHSDYVTCIQFNPVDDRYFISGSL----DAKVRIWSIPE--RQVV--D 644 (927)
Q Consensus 581 L~Sgs~D----gtV~lWDl--~t~~~~--~~~~h~~~V~~v~fsp~dg~~L~sgs~----Dg~I~IWDl~t--~~~v--~ 644 (927)
++.|+.. +.|.+|++ .+++.. ..+........++++| ++++|++... ++.|..|.+.. +++. .
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 5566666 68998888 445443 2333556677899999 8999998877 46899998876 3433 2
Q ss_pred ecc-CCCcEEEEEECCCCCEEEEEEC-CCeEEEEECCC-Ceeeeecccc-c---ccccccCCCCCeEEEEEcCCCCcEEE
Q 002407 645 WND-LHEMVTAACYTPDGQGALVGSY-KGSCHLYNTSE-NKLQQKSPIN-L---QNKKKRSHQRKITGFQFAPGSSSEVL 717 (927)
Q Consensus 645 ~~~-~~~~V~sla~spdg~~l~tgs~-Dg~I~IwDl~~-~~~~~~~~i~-~---~~~~~~~h~~~Vtsl~fspdg~~~Ll 717 (927)
... .......++++|++++|+++.. +|.|.+|++.. +.+....... . .....+.......++.|+|+++.+++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 222 4457788999999999999874 89999999987 4443332211 0 00111233456789999999986555
Q ss_pred EEECCCcEEEEECCc----ceE--EEEeecCCcceEEEEEecCCCEEEEEEC-CCcEEEEECCCCCC-cccccccceeee
Q 002407 718 VTSADSRIRVVDGID----LVH--KFKGFRNTNSQISASLTANGRYVVSASE-DSYVYVWKYEAESR-PSRSKSITVTHS 789 (927)
Q Consensus 718 sgs~Dg~I~VwD~~~----~~~--~~~~~~~~~~v~sv~fspdg~~Lasgs~-Dg~I~IWdl~s~~~-~~~~~~~~~~~~ 789 (927)
+.-....|++|+... +.. .+.. ........++|+|++++++...+ ++.|.+|++..... ......+....
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~- 238 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP- 238 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE-
T ss_pred EecCCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc-
Confidence 555667899998532 222 2222 33445678999999999877764 67799999983221 11111111000
Q ss_pred eeeecC--CCeEEEEecCCce-eEEeecCCceeeccc--cCCCCCcceeccCCCcccCcceeeecCCCCeEEEecccccc
Q 002407 790 YEHFHC--QDVSVAIPWPGVG-DTWGLQDTYLDEFST--ANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFF 864 (927)
Q Consensus 790 ~~~~~~--~~v~vavs~~g~~-~i~~~~d~~i~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~ 864 (927)
..+.. ....++++.+|.. ++.+.....+..+.. ..+....+..+. .....-..++|+|+|++|+.+.+ .
T Consensus 239 -~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~--~~G~~Pr~~~~s~~g~~l~Va~~---~ 312 (345)
T PF10282_consen 239 -EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP--TGGKFPRHFAFSPDGRYLYVANQ---D 312 (345)
T ss_dssp -TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE--ESSSSEEEEEE-TTSSEEEEEET---T
T ss_pred -ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe--CCCCCccEEEEeCCCCEEEEEec---C
Confidence 00111 1223445555554 333334444444443 112222221111 11122345779999999999762 3
Q ss_pred CccccccC
Q 002407 865 DRISATWP 872 (927)
Q Consensus 865 d~~v~~W~ 872 (927)
...+.++.
T Consensus 313 s~~v~vf~ 320 (345)
T PF10282_consen 313 SNTVSVFD 320 (345)
T ss_dssp TTEEEEEE
T ss_pred CCeEEEEE
Confidence 34455554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-07 Score=99.12 Aligned_cols=279 Identities=18% Similarity=0.299 Sum_probs=173.0
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..++.|...+.+..+.. +.++.++...+....|...|..+-|+-.-.++++.+.|..+.---.+.+..+..........
T Consensus 81 ~~L~vg~~ngtvtefs~-sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t 159 (404)
T KOG1409|consen 81 RRLYVGQDNGTVTEFAL-SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPAS 159 (404)
T ss_pred eEEEEEEecceEEEEEh-hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCC
Confidence 45788888888888864 34556666667778999999999999999999999999877544444444433321100000
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~ 580 (927)
.... +-.+...+...+.+.. ..++...-.++.++.+|.+.+++++|.+. +.
T Consensus 160 ~~~~--------d~~~~fvGd~~gqvt~--------------------lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~ 211 (404)
T KOG1409|consen 160 ALQF--------DALYAFVGDHSGQITM--------------------LKLEQNGCQLITTFNGHTGEVTCLKWDPGQRL 211 (404)
T ss_pred CCce--------eeEEEEecccccceEE--------------------EEEeecCCceEEEEcCcccceEEEEEcCCCcE
Confidence 0000 0001111111222111 13344455788899999999999999997 88
Q ss_pred EEEEeCCCcEEEEeCCCCcE--EEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE--ecc---------
Q 002407 581 LLSSSMDKTVRLWHLSSKTC--LKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD--WND--------- 647 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~--~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~--~~~--------- 647 (927)
|++|..|..|.+||+..++- ...+.|.+.|..+...+ .-+.+++++.||.|-+|+++...... |..
T Consensus 212 LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~q 290 (404)
T KOG1409|consen 212 LFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQ 290 (404)
T ss_pred EEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hheeeeeccCCCeEEEEeccceeecCccccccchhhhhCc
Confidence 99999999999999976543 34455999999999888 77889999999999999987643321 111
Q ss_pred -------------------CC-----CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCe
Q 002407 648 -------------------LH-----EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 648 -------------------~~-----~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
|+ ..+...+-+ ......+-+..-.+++.|.-...+....+.++ .........|
T Consensus 291 pffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s-~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~L--A~phei~tgI 367 (404)
T KOG1409|consen 291 PFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSS-NRSSYPTMGFEFSVRVCDSCYPTIKDEERTPL--AIPHEIKTGI 367 (404)
T ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccccc-CccccccccceeEEEEecccchhhhcCCCCcc--ccccccccce
Confidence 00 011111111 11122222233345555543322222211000 0112334568
Q ss_pred EEEEEcCCCCcEEEEEECCCcEEEEECCcce
Q 002407 704 TGFQFAPGSSSEVLVTSADSRIRVVDGIDLV 734 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~ 734 (927)
+.+.+...-. +|++++.|..|+|||.+...
T Consensus 368 tamhlqetlg-lLvTsG~~Rvi~iwd~~~v~ 397 (404)
T KOG1409|consen 368 TAMHLQETLG-LLVTSGTDRVIKIWDVRSVC 397 (404)
T ss_pred eEEEhhhhcc-ceeecCCceEEEEEechhhh
Confidence 8888877654 89999999999999976543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.5e-07 Score=104.17 Aligned_cols=211 Identities=12% Similarity=0.115 Sum_probs=129.7
Q ss_pred ecCCCceEEEccCCCCEEEEEecCCc-E--E-EEEeCCC--cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEE
Q 002407 554 ALSDKPICSFQGHLDDVLDLSWSKSQ-H--L-LSSSMDK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS 627 (927)
Q Consensus 554 ~~s~k~i~~l~gH~~~V~~l~~spd~-~--L-~Sgs~Dg--tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs 627 (927)
+..+.....+......+..-.|+||+ . + ++...++ .|.+.++.+++..+...........+|+| |++.|+..+
T Consensus 171 d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSP-DG~~Laf~s 249 (428)
T PRK01029 171 DYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSP-RKKLLAFIS 249 (428)
T ss_pred cCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECC-CCCEEEEEE
Confidence 34444445555566667788999993 2 2 2444443 58888999887766655566667789999 998887655
Q ss_pred C-CC----cEEEEeCCC---CcEEEeccCC-CcEEEEEECCCCCEEEEEE-CCCeEEEE--ECCC-Ceeeeecccccccc
Q 002407 628 L-DA----KVRIWSIPE---RQVVDWNDLH-EMVTAACYTPDGQGALVGS-YKGSCHLY--NTSE-NKLQQKSPINLQNK 694 (927)
Q Consensus 628 ~-Dg----~I~IWDl~t---~~~v~~~~~~-~~V~sla~spdg~~l~tgs-~Dg~I~Iw--Dl~~-~~~~~~~~i~~~~~ 694 (927)
. +| .+.+|++.. ++........ ......+|+|||+.|+..+ .+|...|| ++.. +.....+
T Consensus 250 ~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l------- 322 (428)
T PRK01029 250 DRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL------- 322 (428)
T ss_pred CCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe-------
Confidence 3 23 344577765 3333443332 3456789999999888765 45654444 4432 1111111
Q ss_pred cccCCCCCeEEEEEcCCCCcEEEEEECC--CcEEEEECCcceE-EEEeecCCcceEEEEEecCCCEEEEEEC---CCcEE
Q 002407 695 KKRSHQRKITGFQFAPGSSSEVLVTSAD--SRIRVVDGIDLVH-KFKGFRNTNSQISASLTANGRYVVSASE---DSYVY 768 (927)
Q Consensus 695 ~~~~h~~~Vtsl~fspdg~~~Llsgs~D--g~I~VwD~~~~~~-~~~~~~~~~~v~sv~fspdg~~Lasgs~---Dg~I~ 768 (927)
......+....|+|+|+.++++...+ ..|.+||...... .+.. ....+....|+|||++|+.... ...|+
T Consensus 323 --t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 323 --TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT--SPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred --ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC--CCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 12334567889999998444444333 4689999643322 2221 1234567899999998875543 34688
Q ss_pred EEECCCCC
Q 002407 769 VWKYEAES 776 (927)
Q Consensus 769 IWdl~s~~ 776 (927)
+|++.++.
T Consensus 399 ~vdl~~g~ 406 (428)
T PRK01029 399 LISLITKK 406 (428)
T ss_pred EEECCCCC
Confidence 88887653
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-06 Score=95.83 Aligned_cols=279 Identities=15% Similarity=0.180 Sum_probs=173.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCc---------------EEEEecCcCcccceeecccccCccccEE-EEccCCCCCeecc
Q 002407 457 GSIWSIKFSLDGRYLASAGEDCV---------------IHVWQVVESERKGELLEKQEDGHLNMLL-LANGSPEPTSLSP 520 (927)
Q Consensus 457 ~~I~~vafSpdG~~LaSgs~Dgt---------------VrVWdv~~~~~~~~l~~~~~~~~~~~v~-~v~~spd~~~la~ 520 (927)
..|.-+.|||.++||.|-+.... +.|||+.++..+..+...... ...+ .+.|+.+..+++-
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~---~~~Wp~~k~s~~D~y~AR 148 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP---YLGWPVLKFSIDDKYVAR 148 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc---ccccceeeeeecchhhhh
Confidence 35889999999999999765544 899999998877665321111 1122 4455555544443
Q ss_pred cccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEE-----EeCCCcEEE
Q 002407 521 KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLS-----SSMDKTVRL 592 (927)
Q Consensus 521 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~S-----gs~DgtV~l 592 (927)
.... .+...... -.+...+...++ ...|....|+|. ..|+. ...++++++
T Consensus 149 vv~~-sl~i~e~t-------------------~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i 206 (561)
T COG5354 149 VVGS-SLYIHEIT-------------------DNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRI 206 (561)
T ss_pred hccC-eEEEEecC-------------------CccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEE
Confidence 2111 11111000 001112222222 345777788875 23443 456788999
Q ss_pred EeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEE-----------CCCcEEEEeCCCCcEEEeccCCCcEEEEEECCC
Q 002407 593 WHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGS-----------LDAKVRIWSIPERQVVDWNDLHEMVTAACYTPD 660 (927)
Q Consensus 593 WDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs-----------~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spd 660 (927)
|.+..+..+.+-. ....=..+.|++ .+++|+.-- ....+.|+++....+.......+.|...+|.|.
T Consensus 207 ~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~ 285 (561)
T COG5354 207 LSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPL 285 (561)
T ss_pred EEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeeccc
Confidence 9999777665543 233334577887 676665431 124588888886655544477899999999998
Q ss_pred CCEEEEE--ECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC---CcEEEEECCcceE
Q 002407 661 GQGALVG--SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD---SRIRVVDGIDLVH 735 (927)
Q Consensus 661 g~~l~tg--s~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D---g~I~VwD~~~~~~ 735 (927)
++.+++. .+.-.+.++|++.+ +...+ ....=+.+.|+|.+. ++++++-| |.|-+||......
T Consensus 286 S~~F~vi~g~~pa~~s~~~lr~N-l~~~~-----------Pe~~rNT~~fsp~~r-~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 286 SSRFAVISGYMPASVSVFDLRGN-LRFYF-----------PEQKRNTIFFSPHER-YILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred CCceeEEecccccceeecccccc-eEEec-----------CCcccccccccCccc-EEEEecCCccccceEEeccCCceE
Confidence 8876654 57888999999887 33322 223334567999887 56665544 7899999654433
Q ss_pred EEEeecCCcceEEEEEecCCCEEEEEE------CCCcEEEEECCCC
Q 002407 736 KFKGFRNTNSQISASLTANGRYVVSAS------EDSYVYVWKYEAE 775 (927)
Q Consensus 736 ~~~~~~~~~~v~sv~fspdg~~Lasgs------~Dg~I~IWdl~s~ 775 (927)
..... ......-+.|+||++++.+.. .|..|.||++...
T Consensus 353 ~~~~~-~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 353 VAGAF-NGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred EEEEe-ecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 33222 122344568999999988764 3788999999764
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.3e-06 Score=106.15 Aligned_cols=305 Identities=15% Similarity=0.176 Sum_probs=191.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEE----ecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeee
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVW----QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVW----dv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~ 530 (927)
..+.|.++.|-++...|+.+..+|.|.+. +..+.. .+. -......|.+++||||..+++.....+.+...
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~--~E~----VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE--IEI----VGSVDSGILAASWSPDEELLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce--eEE----EEEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 433322 111 12334678899999999988887776655433
Q ss_pred cccc-cccccccccCcccccceE---eec-----C---CCc--------------eEEEccCCCCEEEEEecCC-cEEEE
Q 002407 531 RRGR-SINRKSLSLDHMVVPETV---FAL-----S---DKP--------------ICSFQGHLDDVLDLSWSKS-QHLLS 583 (927)
Q Consensus 531 ~~~~-~~~~~~~~~~~~~~~~~v---~~~-----s---~k~--------------i~~l~gH~~~V~~l~~spd-~~L~S 583 (927)
...- .+....+..+.....+.+ |.- . +|. ...+. +.+.-..|+|-.| .++++
T Consensus 148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAV 226 (928)
T PF04762_consen 148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAV 226 (928)
T ss_pred eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEE
Confidence 3222 222222222222111111 000 0 010 11122 4445678899999 55666
Q ss_pred EeC---C---CcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEEC---CCcEEEEeCCCCc---EEE-eccCC
Q 002407 584 SSM---D---KTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSL---DAKVRIWSIPERQ---VVD-WNDLH 649 (927)
Q Consensus 584 gs~---D---gtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~---Dg~I~IWDl~t~~---~v~-~~~~~ 649 (927)
.+. . ..||||+-+ |....+-. -.+--.+++|.| .|++|++... ...|.+|.-+.-+ ..- .....
T Consensus 227 ss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 227 SSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEE 304 (928)
T ss_pred EEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCC
Confidence 553 2 479999976 55443333 233345789999 9999888765 2346677643322 111 11234
Q ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
..|..+.|++|+..|++...|. |.+|-..+...-.+..+.. .....+..+.|+|..+..|.+.+.++.+..++
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~------~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRF------SSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEc------cCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 5899999999999999977555 9999998877555544322 23334555999998887788887767766654
Q ss_pred -----------------------CCcce-EEE-----------EeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 730 -----------------------GIDLV-HKF-----------KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 730 -----------------------~~~~~-~~~-----------~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+.++. ..| .......+|..++|++++..+++-..||.|.+|....
T Consensus 378 ~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 378 FAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 11110 001 1112356788999999998899999999999998655
Q ss_pred C
Q 002407 775 E 775 (927)
Q Consensus 775 ~ 775 (927)
.
T Consensus 458 ~ 458 (928)
T PF04762_consen 458 K 458 (928)
T ss_pred C
Confidence 3
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.9e-06 Score=89.45 Aligned_cols=187 Identities=19% Similarity=0.244 Sum_probs=123.2
Q ss_pred CCcEEEEeCCCC----cEEEEEecCCceEEEEEccCCCCEEEEEECC---CcEEEEeCCC--CcEEEe--ccC-CCcEEE
Q 002407 587 DKTVRLWHLSSK----TCLKIFSHSDYVTCIQFNPVDDRYFISGSLD---AKVRIWSIPE--RQVVDW--NDL-HEMVTA 654 (927)
Q Consensus 587 DgtV~lWDl~t~----~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D---g~I~IWDl~t--~~~v~~--~~~-~~~V~s 654 (927)
++-|++|++.+. ..+........++-|+|+| +.++|.++-.+ |.|.-|.++. |++... ... ....+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 567999999843 2344445788899999999 88888887654 6677777764 554332 222 234589
Q ss_pred EEECCCCCEEEEEEC-CCeEEEEECCC-Ceeeeeccccccccc---ccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 655 ACYTPDGQGALVGSY-KGSCHLYNTSE-NKLQQKSPINLQNKK---KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 655 la~spdg~~l~tgs~-Dg~I~IwDl~~-~~~~~~~~i~~~~~~---~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
++++++|++++++.. .|.|.++-++. +.+....+....... .+....-+....|.|+++.++++.-.-.+|.+|+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 999999999888765 57899999966 444333222111000 0011122778889999985444445567899998
Q ss_pred CCcceE----EEEeecCCcceEEEEEecCCCEEEEEEC-CCcEEEEECCCC
Q 002407 730 GIDLVH----KFKGFRNTNSQISASLTANGRYVVSASE-DSYVYVWKYEAE 775 (927)
Q Consensus 730 ~~~~~~----~~~~~~~~~~v~sv~fspdg~~Lasgs~-Dg~I~IWdl~s~ 775 (927)
..+... .... ........+.|+|++++....++ +++|.+|.++..
T Consensus 174 ~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 174 LDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred cccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 543211 1111 23344567999999999887774 899999999875
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.2e-06 Score=96.26 Aligned_cols=175 Identities=12% Similarity=0.155 Sum_probs=102.2
Q ss_pred CcEEEEeCCCCcEEEEEec--C-Cce-EEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC-CcEEEEEECCCCC
Q 002407 588 KTVRLWHLSSKTCLKIFSH--S-DYV-TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH-EMVTAACYTPDGQ 662 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h--~-~~V-~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~-~~V~sla~spdg~ 662 (927)
..++|||+.+|...+.|.. . ..+ .-+.|+. |++|++--.. ..|.||+...-.++.....+ ..|....|+|.+.
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~ 359 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSN 359 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcc
Confidence 5699999999999888862 2 222 3467898 9999887666 57999998876655543333 5788899999987
Q ss_pred EEEEEECC-----CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE-E---------CCCcEEE
Q 002407 663 GALVGSYK-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT-S---------ADSRIRV 727 (927)
Q Consensus 663 ~l~tgs~D-----g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg-s---------~Dg~I~V 727 (927)
.||-=+.. ..+.|..+.+++.+.... -+.-.=..+.|..+|. +|.+- . .-..+.|
T Consensus 360 llAYwtpe~~~~parvtL~evPs~~~iRt~n---------lfnVsDckLhWQk~gd-yLcvkvdR~tK~~~~g~f~n~eI 429 (698)
T KOG2314|consen 360 LLAYWTPETNNIPARVTLMEVPSKREIRTKN---------LFNVSDCKLHWQKSGD-YLCVKVDRHTKSKVKGQFSNLEI 429 (698)
T ss_pred eEEEEcccccCCcceEEEEecCccceeeecc---------ceeeeccEEEeccCCc-EEEEEEEeeccccccceEeeEEE
Confidence 76643221 234455554444443321 1111122345666665 33321 1 1112344
Q ss_pred EECCcceEEEEeecCCcceEEEEEecCCCEEEEEEC---CCcEEEEECCC
Q 002407 728 VDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASE---DSYVYVWKYEA 774 (927)
Q Consensus 728 wD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~---Dg~I~IWdl~s 774 (927)
+..++.............+..++|-|.|..+++-+. ..++.+|.+++
T Consensus 430 frireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 430 FRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred EEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 443332222222333556888999999988776543 23466666653
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-05 Score=88.69 Aligned_cols=277 Identities=13% Similarity=0.060 Sum_probs=164.0
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecCcCcccceeeccccc
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE----------DCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~----------DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
++|.+.+..+.++..... .-..+- .+ +||||+.|+.+.. +..|.|||+.+.+...++.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~-----~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~- 98 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTD-----GGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG- 98 (352)
T ss_pred ceEEEEECCCCEEEEEEE-----ccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC-
Confidence 788888877766554433 212222 24 9999998877755 78999999999887766531100
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCc-
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ- 579 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~- 579 (927)
|... .......++++|++
T Consensus 99 ----------------------------------------------------------p~~~---~~~~~~~~~ls~dgk 117 (352)
T TIGR02658 99 ----------------------------------------------------------PRFL---VGTYPWMTSLTPDNK 117 (352)
T ss_pred ----------------------------------------------------------chhh---ccCccceEEECCCCC
Confidence 0000 01122356788884
Q ss_pred EEEEEe-C-CCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEE----EeccC-CCc
Q 002407 580 HLLSSS-M-DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVV----DWNDL-HEM 651 (927)
Q Consensus 580 ~L~Sgs-~-DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v----~~~~~-~~~ 651 (927)
+|+... . +..|-+.|+.+++.+..+.-.+...-...++ +..+ +-+.||......+.+ ++.. ..+.. +..
T Consensus 118 ~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~ 194 (352)
T TIGR02658 118 TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEY 194 (352)
T ss_pred EEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC-CccE--EEeecCceEEEEecCCCceEEeeeeeecCCccc
Confidence 555554 2 6899999999999999887544333333332 2222 334566655543322 2211 11111 000
Q ss_pred E-EEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeeccccccc---ccccCCCCCeEEEEEcCCCCcEEEEEE------
Q 002407 652 V-TAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQN---KKKRSHQRKITGFQFAPGSSSEVLVTS------ 720 (927)
Q Consensus 652 V-~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~---~~~~~h~~~Vtsl~fspdg~~~Llsgs------ 720 (927)
+ ..-.|.+ +|+++.+... |.|.+.|+..........+.... .+..-....+.-++++|+++.+++...
T Consensus 195 v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~t 273 (352)
T TIGR02658 195 LINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWT 273 (352)
T ss_pred cccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccc
Confidence 0 0013455 8888888777 99999997654433322221110 000123344455999999885554332
Q ss_pred ---CCCcEEEEECCcceEEEEeecCCcceEEEEEecCCC-EEEEEE-CCCcEEEEECCCCCCcccc
Q 002407 721 ---ADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGR-YVVSAS-EDSYVYVWKYEAESRPSRS 781 (927)
Q Consensus 721 ---~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~-~Lasgs-~Dg~I~IWdl~s~~~~~~~ 781 (927)
..+.|.++|........... -...+..++++||++ +|++.. .++.|.|+|..+.+.....
T Consensus 274 hk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 274 HKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 22579999976655544433 245688999999999 887666 5788999999987665443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.2e-07 Score=102.71 Aligned_cols=272 Identities=14% Similarity=0.180 Sum_probs=182.2
Q ss_pred CCCeEEEccCceEEEEeccCcc----------cccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCK----------DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~----------~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~ 489 (927)
.+.++++|..+|.+++....+. ..+.+.+.|+|.||.+.|.-+.|+...+.|-|...+|.|.||-+-.+.
T Consensus 25 e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgs 104 (1189)
T KOG2041|consen 25 ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGS 104 (1189)
T ss_pred cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeeccc
Confidence 3456778888888777755432 233566779999999999999999999999999999999999998887
Q ss_pred ccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCC
Q 002407 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDD 569 (927)
Q Consensus 490 ~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~ 569 (927)
...++. .......|.++.|..+|..++....++.+..... .... +|. + .+++ .-
T Consensus 105 W~EEMi---NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv---------dGNR------Iwg---K---eLkg--~~ 158 (1189)
T KOG2041|consen 105 WCEEMI---NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV---------DGNR------IWG---K---ELKG--QL 158 (1189)
T ss_pred HHHHHh---hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee---------ccce------ecc---h---hcch--he
Confidence 655543 3456678899999999999988877776633211 1111 111 1 1111 11
Q ss_pred EEEEEecCC-cEEEEEeCCCcEEEEeCCCC-------cEEEEE----e-cCCceEEEEEcc-------CCCCEEEEEECC
Q 002407 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSK-------TCLKIF----S-HSDYVTCIQFNP-------VDDRYFISGSLD 629 (927)
Q Consensus 570 V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~-------~~~~~~----~-h~~~V~~v~fsp-------~dg~~L~sgs~D 629 (927)
...+.|++| ..++.+-..|.+.++|.+.. .+.... . ....|..+.|.. .+...|+.+...
T Consensus 159 l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 159 LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence 236789999 66777778899999997643 221111 1 233466666641 156689999999
Q ss_pred CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECC---------CeEEEEECCCCeeeeecccccccccccCCC
Q 002407 630 AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYK---------GSCHLYNTSENKLQQKSPINLQNKKKRSHQ 700 (927)
Q Consensus 630 g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~D---------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~ 700 (927)
|.+.|-.-.+......++..-.+..+.|+++|..|++++.+ +.|.+|..- |.....+ +...
T Consensus 239 Gr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtl---------kvpg 308 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTL---------KVPG 308 (1189)
T ss_pred ceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEE---------ecCC
Confidence 99887654443333344445778899999999999998764 245555443 3344433 3566
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 701 RKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 701 ~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
..|+++.|-..| +-++-.-|+.|++-+
T Consensus 309 ~~It~lsWEg~g--LriA~Avdsfiyfan 335 (1189)
T KOG2041|consen 309 SCITGLSWEGTG--LRIAIAVDSFIYFAN 335 (1189)
T ss_pred ceeeeeEEcCCc--eEEEEEecceEEEEe
Confidence 789999998755 344445566666544
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-06 Score=91.92 Aligned_cols=197 Identities=14% Similarity=0.150 Sum_probs=134.9
Q ss_pred EEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEE--EEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEE
Q 002407 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK--IFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVD 644 (927)
Q Consensus 570 V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~--~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~ 644 (927)
..++.|++. ..++++-.+|.+.+-+.......+ ..+ |.-.++...|+-.+.+++++|+.|+.+..||++. ++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 457788876 568888888998866665554444 334 9999999999988889999999999999999993 33332
Q ss_pred --eccCCCcEEEEEECC-CCCEEEEEECCCeEEEEECCC-CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 645 --WNDLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 645 --~~~~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
...|...|.++.-+| .+.+|++|+.|-.|++||.++ ++.+.. ....+.|..+.++|.-...+++++
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~----------~~v~GGVWRi~~~p~~~~~lL~~C 273 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK----------AKVGGGVWRIKHHPEIFHRLLAAC 273 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc----------CccccceEEEEecchhhhHHHHHH
Confidence 334567888888776 678999999999999999984 444433 245588999999997554556666
Q ss_pred CCCcEEEEECCcceE----EEEee-cCCcceEEEEEecCCCEEEEEE-CCCcEE-EEECCCCC
Q 002407 721 ADSRIRVVDGIDLVH----KFKGF-RNTNSQISASLTANGRYVVSAS-EDSYVY-VWKYEAES 776 (927)
Q Consensus 721 ~Dg~I~VwD~~~~~~----~~~~~-~~~~~v~sv~fspdg~~Lasgs-~Dg~I~-IWdl~s~~ 776 (927)
.-.-.+|.+..+... .+..+ .+..-.....|.....+|+|++ .|..|+ +|-.-++.
T Consensus 274 Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 274 MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred HhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 666666766332211 12111 2233333444544445688865 577755 77655543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.5e-08 Score=110.66 Aligned_cols=247 Identities=14% Similarity=0.181 Sum_probs=166.0
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
.+.+.||+..|..++--.+.+-+++++.|++|++|.+.......
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~------------------------------------ 771 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI------------------------------------ 771 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc------------------------------------
Confidence 46788999999999887777889999999999999985421000
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-- 605 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-- 605 (927)
-+..+..+++.|+.+|.++.|-.+ ..++ +.|+-|.+||.--++++..+.
T Consensus 772 --------------------------~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~da 823 (1034)
T KOG4190|consen 772 --------------------------GTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDA 823 (1034)
T ss_pred --------------------------ccceeeeEhhhccCcccceeeeeccceee--eccCcceeecccccchhHhhhcC
Confidence 011345577889999999999877 3444 558999999988777665332
Q ss_pred -cCCceEEEEEccC-CCCEEEEE-ECCCcEEEEeCCCCcEEEe------ccCCCcEEEEEECCCCCEEEEEECCCeEEEE
Q 002407 606 -HSDYVTCIQFNPV-DDRYFISG-SLDAKVRIWSIPERQVVDW------NDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676 (927)
Q Consensus 606 -h~~~V~~v~fsp~-dg~~L~sg-s~Dg~I~IWDl~t~~~v~~------~~~~~~V~sla~spdg~~l~tgs~Dg~I~Iw 676 (927)
..+.+..+..-|. +..+++.+ +...+|+++|.+..+.... ......+.+++.-+.|++++++-..|.|.+.
T Consensus 824 pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~L 903 (1034)
T KOG4190|consen 824 PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAIL 903 (1034)
T ss_pred cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEE
Confidence 3344444444442 34455554 6788999999998765431 1223578899999999999999999999999
Q ss_pred ECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE-EECCcceEEEEeecCCcceEEEEEecCC
Q 002407 677 NTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV-VDGIDLVHKFKGFRNTNSQISASLTANG 755 (927)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V-wD~~~~~~~~~~~~~~~~v~sv~fspdg 755 (927)
|.++++.+..+. ........++ .|. .+.++....|.++.| |.....+..++......+..-+ -.-|
T Consensus 904 DaR~G~vINswr---------pmecdllqla-aps-dq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvg 970 (1034)
T KOG4190|consen 904 DARNGKVINSWR---------PMECDLLQLA-APS-DQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVG 970 (1034)
T ss_pred ecCCCceeccCC---------cccchhhhhc-Cch-hHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccC
Confidence 999999776532 2222222222 232 236777778888888 8765555555443222222111 1235
Q ss_pred CEEEEEECCCcEEEEEC
Q 002407 756 RYVVSASEDSYVYVWKY 772 (927)
Q Consensus 756 ~~Lasgs~Dg~I~IWdl 772 (927)
.-|+++.....+.+|.-
T Consensus 971 pSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 971 PSLVTAQNGNILGVYAD 987 (1034)
T ss_pred ceeEEeccCcEEEEEec
Confidence 56777776666777753
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.1e-08 Score=119.74 Aligned_cols=194 Identities=16% Similarity=0.250 Sum_probs=151.9
Q ss_pred ccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC
Q 002407 564 QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 564 ~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~ 640 (927)
+.|-..|.++.-+|. .+.+||+.||.|++|....++.+..+. ....|+.+.|+. .|+.+..+..||.+.+|.+...
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCCc
Confidence 345567888888886 789999999999999999999888876 458899999999 8999999999999999999876
Q ss_pred cEEEeccCCCcEEEEEECCCCCEEEEEE---CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEE
Q 002407 641 QVVDWNDLHEMVTAACYTPDGQGALVGS---YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (927)
Q Consensus 641 ~~v~~~~~~~~V~sla~spdg~~l~tgs---~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Ll 717 (927)
....+.-|......+.|-. ..+++++ .++.+.+||..-.....-.. ..|...++++++.|... +|+
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--------~~H~~gaT~l~~~P~~q-lli 2352 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--------TCHDGGATVLAYAPKHQ-LLI 2352 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--------eecCCCceEEEEcCcce-EEE
Confidence 6677777877777777764 4566653 46789999975432221111 48999999999999765 899
Q ss_pred EEECCCcEEEEECCc--ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccc
Q 002407 718 VTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRS 781 (927)
Q Consensus 718 sgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~ 781 (927)
+|+.+|.|++||.+. +.+.++. ++ ...++++++..|+|+||++.....+...
T Consensus 2353 sggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred ecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 999999999999643 3333322 33 5678999999999999999886554433
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-05 Score=89.44 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=99.5
Q ss_pred cCCCCEEEEEecCC-cEEEEEeCCC-cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE
Q 002407 565 GHLDDVLDLSWSKS-QHLLSSSMDK-TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642 (927)
Q Consensus 565 gH~~~V~~l~~spd-~~L~Sgs~Dg-tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~ 642 (927)
+|.+.|.-..+.-+ ..++.|..|| .|-|+|..+++..+....-+.|.++..+| ++++++.+-....|.+.|+.++.+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCe
Confidence 45666766666655 5688899999 89999999998887777888999999999 999999998888899999999987
Q ss_pred EEeccC-CCcEEEEEECCCCCEEEEEECCC----eEEEEECCCCeeee
Q 002407 643 VDWNDL-HEMVTAACYTPDGQGALVGSYKG----SCHLYNTSENKLQQ 685 (927)
Q Consensus 643 v~~~~~-~~~V~sla~spdg~~l~tgs~Dg----~I~IwDl~~~~~~~ 685 (927)
...-.. .+.|+.+.|+|+++++|-+--+| .|++||+.+++...
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 654443 36899999999999999877665 59999998877554
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.9e-06 Score=93.61 Aligned_cols=263 Identities=12% Similarity=0.065 Sum_probs=157.2
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..++.+..++.|..++..+++..-.+. +.+ .....+. .++..++.++.++.|..+|..+++.+.+....
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~---~~~--~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---- 134 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVD---LDE--RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS---- 134 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeec---CCC--CcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC----
Confidence 356777777888888877766543221 111 1111122 24667888888999999998887654432100
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL 581 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L 581 (927)
+. + ...++ . .++.+
T Consensus 135 -------------------------------------------------------~~-~-----~~~p~----v-~~~~v 148 (377)
T TIGR03300 135 -------------------------------------------------------SE-V-----LSPPL----V-ANGLV 148 (377)
T ss_pred -------------------------------------------------------ce-e-----ecCCE----E-ECCEE
Confidence 00 0 00001 0 13567
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEecCCceE------EEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCC-----
Q 002407 582 LSSSMDKTVRLWHLSSKTCLKIFSHSDYVT------CIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE----- 650 (927)
Q Consensus 582 ~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~------~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~----- 650 (927)
+.++.++.|+.||..+++.+..+....... ...+ .+..++.+..++.+..+|+.+++.+-......
T Consensus 149 ~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~ 225 (377)
T TIGR03300 149 VVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRT 225 (377)
T ss_pred EEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCC
Confidence 777889999999999999887776433221 1122 12467788888999999999988654222110
Q ss_pred c---EEEEEECC--CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcE
Q 002407 651 M---VTAACYTP--DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI 725 (927)
Q Consensus 651 ~---V~sla~sp--dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I 725 (927)
. ...+.-+| .+..+++++.+|.++.||+.+++....... ......... +. .+++++.+|.|
T Consensus 226 ~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-----------~~~~~p~~~--~~-~vyv~~~~G~l 291 (377)
T TIGR03300 226 ELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-----------SSYQGPAVD--DN-RLYVTDADGVV 291 (377)
T ss_pred chhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-----------CCccCceEe--CC-EEEEECCCCeE
Confidence 0 00011111 356788888999999999999887654321 111122222 33 67888899999
Q ss_pred EEEECCcceEEEEeecC-CcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccc
Q 002407 726 RVVDGIDLVHKFKGFRN-TNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 726 ~VwD~~~~~~~~~~~~~-~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~ 780 (927)
..+|..+.......... ........+ .+.+|++++.+|.|++||..+++...+
T Consensus 292 ~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~ 345 (377)
T TIGR03300 292 VALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVAR 345 (377)
T ss_pred EEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 99997554433332111 111122222 366899999999999999988766543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3e-06 Score=98.65 Aligned_cols=171 Identities=16% Similarity=0.142 Sum_probs=101.2
Q ss_pred EEEEecCCc-EEEEEeC-----CCcEEEEeCCC---CcEEEEEec-CCceEEEEEccCCCCEEEEEE-CCCcEEEE--eC
Q 002407 571 LDLSWSKSQ-HLLSSSM-----DKTVRLWHLSS---KTCLKIFSH-SDYVTCIQFNPVDDRYFISGS-LDAKVRIW--SI 637 (927)
Q Consensus 571 ~~l~~spd~-~L~Sgs~-----DgtV~lWDl~t---~~~~~~~~h-~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IW--Dl 637 (927)
....|+||+ .|+..+. +-.+.+|++.. +........ .......+|+| |++.|+..+ .+|...|| ++
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEEC
Confidence 456788883 5554432 22345577765 233333332 23456789999 998777665 46655555 44
Q ss_pred CC--CcEEEeccCCCcEEEEEECCCCCEEEEEECC---CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC
Q 002407 638 PE--RQVVDWNDLHEMVTAACYTPDGQGALVGSYK---GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 638 ~t--~~~v~~~~~~~~V~sla~spdg~~l~tgs~D---g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
.. +...........+....|+|||+.|+....+ ..|.+||+.+++..... .....+....|+|++
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt----------~~~~~~~~p~wSpDG 382 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT----------TSPENKESPSWAIDS 382 (428)
T ss_pred cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc----------CCCCCccceEECCCC
Confidence 32 3333333444567788999999998876553 36999999888754321 122345678999998
Q ss_pred CcEEEEEEC--CCcEEEEECCcc-eEEEEeecCCcceEEEEEecC
Q 002407 713 SSEVLVTSA--DSRIRVVDGIDL-VHKFKGFRNTNSQISASLTAN 754 (927)
Q Consensus 713 ~~~Llsgs~--Dg~I~VwD~~~~-~~~~~~~~~~~~v~sv~fspd 754 (927)
..+++++.. ...|+++|.... ...+. .....+...+|+|-
T Consensus 383 ~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt--~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 383 LHLVYSAGNSNESELYLISLITKKTRKIV--IGSGEKRFPSWGAF 425 (428)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEEee--cCCCcccCceecCC
Confidence 854444443 356777885432 22222 12333455677664
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.4e-05 Score=91.13 Aligned_cols=207 Identities=15% Similarity=0.209 Sum_probs=146.6
Q ss_pred ceeeeeEeecCCCCEEEEEEcCCC------------CEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccC
Q 002407 445 ALYKCQEIQAHNGSIWSIKFSLDG------------RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS 512 (927)
Q Consensus 445 ~l~~~q~L~gH~~~I~~vafSpdG------------~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~s 512 (927)
.+..+|.+.-|...|+.|.|.|-. -+||++...|.|.|||+..+....
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~-------------------- 103 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN-------------------- 103 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh--------------------
Confidence 344557888999999999998731 267888889999999986543222
Q ss_pred CCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-----cEEEEEeCC
Q 002407 513 PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-----QHLLSSSMD 587 (927)
Q Consensus 513 pd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-----~~L~Sgs~D 587 (927)
.+..|.++|.+++|-+. ..|++-...
T Consensus 104 -------------------------------------------------~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~s 134 (1062)
T KOG1912|consen 104 -------------------------------------------------WLSHSNDSVQDLCWVPARDDSRDVLLAIHGS 134 (1062)
T ss_pred -------------------------------------------------hhcCCCcchhheeeeeccCcchheeEEecCC
Confidence 23457778888888763 457777888
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-------CcEEEeccC-CC--------
Q 002407 588 KTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-------RQVVDWNDL-HE-------- 650 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-------~~~v~~~~~-~~-------- 650 (927)
.+|.+|+..+|+....+. ......|+.+.|.+.+.|+.-+..|.|.+-+.-. ++..++... .+
T Consensus 135 s~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~ 214 (1062)
T KOG1912|consen 135 STLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERET 214 (1062)
T ss_pred cEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhh
Confidence 999999999999988877 4456677999999999988888888888776522 222222111 00
Q ss_pred -----------------cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 651 -----------------MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 651 -----------------~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
....++|+|.-+.++.......+.++|++-...+....++ .+.+.-+.+.|+.+
T Consensus 215 at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie---------r~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 215 ATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE---------RGGAKFVDVLPDPR 285 (1062)
T ss_pred hccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec---------cCCcceeEeccCCC
Confidence 0123567887777777777888999999888777765532 23344456666643
Q ss_pred c-EEEEEECCCcEEEEE
Q 002407 714 S-EVLVTSADSRIRVVD 729 (927)
Q Consensus 714 ~-~Llsgs~Dg~I~VwD 729 (927)
+ .|++.-.||.+.+|-
T Consensus 286 rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 286 RDALFCLHSNGRLTIRV 302 (1062)
T ss_pred cceEEEEecCCeEEEEE
Confidence 3 567777888888875
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-05 Score=102.14 Aligned_cols=207 Identities=13% Similarity=0.135 Sum_probs=133.6
Q ss_pred EEEEEecCC-cEEEEEe-CCCcEEEEeCCCCcEEEEEec-----------------CCceEEEEEccCCCCEEEEEECCC
Q 002407 570 VLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFSH-----------------SDYVTCIQFNPVDDRYFISGSLDA 630 (927)
Q Consensus 570 V~~l~~spd-~~L~Sgs-~DgtV~lWDl~t~~~~~~~~h-----------------~~~V~~v~fsp~dg~~L~sgs~Dg 630 (927)
...|++.++ +.|+.+. ..+.|+++|+.++........ -...+.|+|+|.++.++++...++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence 466788876 5555544 457799999877653322110 123468999995566677777888
Q ss_pred cEEEEeCCCCcEEEeccC---------------CCcEEEEEECCCCCEEE-EEECCCeEEEEECCCCeeeeecccc----
Q 002407 631 KVRIWSIPERQVVDWNDL---------------HEMVTAACYTPDGQGAL-VGSYKGSCHLYNTSENKLQQKSPIN---- 690 (927)
Q Consensus 631 ~I~IWDl~t~~~v~~~~~---------------~~~V~sla~spdg~~l~-tgs~Dg~I~IwDl~~~~~~~~~~i~---- 690 (927)
.|++||..++.+..+... -.....++++|+++.|+ +-+.++.|++||+.++.......-.
T Consensus 706 ~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~ 785 (1057)
T PLN02919 706 QIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS 785 (1057)
T ss_pred eEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence 999999988765432110 12456799999998554 4556789999999876532111000
Q ss_pred cccccc--------cCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc-eEEEEeec------------CCcceEEE
Q 002407 691 LQNKKK--------RSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL-VHKFKGFR------------NTNSQISA 749 (927)
Q Consensus 691 ~~~~~~--------~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~-~~~~~~~~------------~~~~v~sv 749 (927)
...... ........++++.++|. ++++-..++.|++||.... ...+.+.. .......+
T Consensus 786 ~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GI 864 (1057)
T PLN02919 786 DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGL 864 (1057)
T ss_pred cccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEE
Confidence 000000 01122346889999886 7788888999999996432 22222211 11245678
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 750 SLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 750 ~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
+++++|+++++-+.++.|++||+.+...
T Consensus 865 avd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 865 ALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 9999999989888999999999988653
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.7e-05 Score=85.23 Aligned_cols=186 Identities=12% Similarity=0.146 Sum_probs=137.1
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEE-e-----------cCCceEEEE-EccCCCCEEEEEECCCcEEEEeCCCCcEEEe
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIF-S-----------HSDYVTCIQ-FNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~-~-----------h~~~V~~v~-fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~ 645 (927)
+.-+.-+..|.|.+||..+....+.- . ...+..-+. |++.+|++++..+. |+..|.+...+-.++.
T Consensus 278 GkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv 356 (668)
T COG4946 278 GKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQV 356 (668)
T ss_pred CcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEEc
Confidence 34444556677999998876543321 1 001111122 56667899988886 7788877766666553
Q ss_pred ccCCCcEEEEEECCCCCEEEEEECCC-eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 646 NDLHEMVTAACYTPDGQGALVGSYKG-SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 646 ~~~~~~V~sla~spdg~~l~tgs~Dg-~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
.+...|.-..+.-+++.++.|..|| .+-|||..+++.... ...-+.|.++..+|+|+ .++++.....
T Consensus 357 -~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~----------e~~lg~I~av~vs~dGK-~~vvaNdr~e 424 (668)
T COG4946 357 -GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI----------EKDLGNIEAVKVSPDGK-KVVVANDRFE 424 (668)
T ss_pred -CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe----------eCCccceEEEEEcCCCc-EEEEEcCceE
Confidence 4455688888888888999999999 899999999876544 35668899999999987 6888888888
Q ss_pred EEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC----cEEEEECCCCCC
Q 002407 725 IRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS----YVYVWKYEAESR 777 (927)
Q Consensus 725 I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg----~I~IWdl~s~~~ 777 (927)
|.++|..+............-|+.+.|+|++++||-+--+| .|+++|+.+++.
T Consensus 425 l~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 425 LWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 99999776666666666678899999999999999876554 589999988653
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.2e-07 Score=98.28 Aligned_cols=105 Identities=21% Similarity=0.329 Sum_probs=88.6
Q ss_pred EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE--eccCCCcEEEEEECCC
Q 002407 583 SSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD--WNDLHEMVTAACYTPD 660 (927)
Q Consensus 583 Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~--~~~~~~~V~sla~spd 660 (927)
..+....+.+|.+..+.+..++.|-..++.|+|+| |+++|+++..|..|++-.....-.+. .++|...|..++..++
T Consensus 127 kagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred ecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence 34555677788887788888889999999999999 99999999999999998887766554 4567889999999875
Q ss_pred CCEEEEEECCCeEEEEECCCCeeeeeccc
Q 002407 661 GQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (927)
Q Consensus 661 g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i 689 (927)
. .|++|+.|++|++||+.+++.+..+.+
T Consensus 206 ~-~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 206 Y-LLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred c-eeeecCCCCcEEEEecccCCcccccch
Confidence 4 599999999999999999998876543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.2e-07 Score=99.38 Aligned_cols=270 Identities=13% Similarity=0.163 Sum_probs=176.2
Q ss_pred CCCCeEEEccCceEEEEeccCc--ccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeec
Q 002407 419 DSQDVSFHGQERVRVRQYGKSC--KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (927)
Q Consensus 419 d~~~~~~~g~~~~~V~i~~~~s--~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~ 496 (927)
|....+.+.+.+.+|++|..+. .+.....+.-++++|+.+|..+.|-.+.++++++ ||.|++||---+..+.++..
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~d 822 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMED 822 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhc
Confidence 3445567889999999998764 2333334556889999999999999999999986 89999999754443332210
Q ss_pred ccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEec
Q 002407 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (927)
Q Consensus 497 ~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~s 576 (927)
.+. .+-.+.|.|+.--
T Consensus 823 apk----------------------------------------------------------------~~a~~~ikcl~nv 838 (1034)
T KOG4190|consen 823 APK----------------------------------------------------------------EGAGGNIKCLENV 838 (1034)
T ss_pred Ccc----------------------------------------------------------------cCCCceeEecccC
Confidence 000 0111223333211
Q ss_pred CCcEEEE-EeCCCcEEEEeCCCCcEEEEEe------cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccC
Q 002407 577 KSQHLLS-SSMDKTVRLWHLSSKTCLKIFS------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDL 648 (927)
Q Consensus 577 pd~~L~S-gs~DgtV~lWDl~t~~~~~~~~------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~ 648 (927)
....++. ++...+|+++|.+..+....+. ....+.+++..+ .|+.++++-..|.|.+.|.++|+++. |...
T Consensus 839 ~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpm 917 (1034)
T KOG4190|consen 839 DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPM 917 (1034)
T ss_pred cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence 1133444 4788999999999887766654 345688999999 99999999999999999999999875 4444
Q ss_pred CCcEEEEEECCCCCEEEEEECCCeEEE-EECCCCeeeeecccccccccccCCCCCeEEEEEc-CCCCcEEEEEECCCcEE
Q 002407 649 HEMVTAACYTPDGQGALVGSYKGSCHL-YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA-PGSSSEVLVTSADSRIR 726 (927)
Q Consensus 649 ~~~V~sla~spdg~~l~tgs~Dg~I~I-wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs-pdg~~~Llsgs~Dg~I~ 726 (927)
+-....++ .|..+.++....|.++.+ |-.-.+....+... ...+. .|. .-|+ -+++......+.
T Consensus 918 ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp---------ppepa---hflqsvgp-SLV~a~~Gn~lg 983 (1034)
T KOG4190|consen 918 ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP---------PPEPA---HFLQSVGP-SLVTAQNGNILG 983 (1034)
T ss_pred cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC---------CCcch---hhhhccCc-eeEEeccCcEEE
Confidence 43333333 355667777778888888 87766654433221 11111 111 1133 467777777788
Q ss_pred EEEC------CcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEE
Q 002407 727 VVDG------IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYV 769 (927)
Q Consensus 727 VwD~------~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~I 769 (927)
||-. ...+.++......+..++++.-|-..-++.|.+.|.|.+
T Consensus 984 VYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 984 VYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred EEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 8852 122333343444556677777777777778888888875
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.4e-07 Score=97.17 Aligned_cols=262 Identities=18% Similarity=0.252 Sum_probs=152.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc-ccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE-RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~-~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
....|+++.|...|.|||+|...|.|.+|.-.... +...+... ..+ +.++-.+
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~te-FQs---------he~EFDY---------------- 78 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTE-FQS---------HELEFDY---------------- 78 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhh-hcc---------cccchhh----------------
Confidence 35679999999999999999999999999754332 00110000 000 0000000
Q ss_pred ccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCC
Q 002407 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSD 608 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~ 608 (927)
+..+ .-...|..|.|..+ ..++..+.|++|++|.+.......+.. .+.
T Consensus 79 --------------------------LkSl-eieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~ 131 (460)
T COG5170 79 --------------------------LKSL-EIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSD 131 (460)
T ss_pred --------------------------hhhc-cHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccc
Confidence 0000 01245788888765 468888999999999987653221111 111
Q ss_pred ceEEEEEccCCCCE-----EEE--EEC-CCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Q 002407 609 YVTCIQFNPVDDRY-----FIS--GSL-DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 609 ~V~~v~fsp~dg~~-----L~s--gs~-Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~ 680 (927)
.++ +|..|.+ |.- .+. |..|.. ....+....|...|.++.|..|...++++ .|-.|.+|++.-
T Consensus 132 ~~~----~~~~g~~~s~~~l~lprls~hd~iiaa----~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i 202 (460)
T COG5170 132 SFH----SPMGGPLTSTKELLLPRLSEHDEIIAA----KPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEI 202 (460)
T ss_pred ccc----cccCCCcCCHHHhhcccccccceEEEe----ccceeccccceeEeeeeeecCchheeeec-cceeeeeccccc
Confidence 111 1101100 000 000 111111 11222335667789999999998887776 577899998865
Q ss_pred CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc------eEEE----Eee------cCCc
Q 002407 681 NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL------VHKF----KGF------RNTN 744 (927)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~------~~~~----~~~------~~~~ 744 (927)
......+ +.+.+.+......-|++..|+|....++...+..|.|++-|++.. ...+ .+. .-..
T Consensus 203 ~D~sFnI-VDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivs 281 (460)
T COG5170 203 IDGSFNI-VDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVS 281 (460)
T ss_pred cCCceEE-EeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhh
Confidence 3322211 111111112234568899999988888999999999999996521 1111 110 1134
Q ss_pred ceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccc
Q 002407 745 SQISASLTANGRYVVSASEDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 745 ~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~ 780 (927)
.|..+.|+++|+||++-+. -+|+|||++....|..
T Consensus 282 SISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik 316 (460)
T COG5170 282 SISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK 316 (460)
T ss_pred hhcceEEcCCCcEEEEecc-ceEEEEecccccCCce
Confidence 5778899999999998764 5799999998776643
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-05 Score=83.72 Aligned_cols=189 Identities=13% Similarity=0.086 Sum_probs=131.4
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEecC--CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc--EE--EeccCCCcEE
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHS--DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--VV--DWNDLHEMVT 653 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~h~--~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~--~v--~~~~~~~~V~ 653 (927)
.+..++.|.++++.++..+...... |. -.+..+.+++ +++++++.+....|..|.++... .+ ......+.-.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~-h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF 207 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAV-HNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGF 207 (344)
T ss_pred ceeeccCCcceeEEEEecCccccee-eccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCce
Confidence 4778889999999988765433222 32 2388999999 99999999999999999987632 22 2334446667
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc-EEEEEECCCcEEEEECCc
Q 002407 654 AACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS-EVLVTSADSRIRVVDGID 732 (927)
Q Consensus 654 sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~-~Llsgs~Dg~I~VwD~~~ 732 (927)
+..|+.....+|++..||++.|||++......... ...+..|.+.+..+.|++.|.. +|+..-.-+.+.|.|+++
T Consensus 208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~----sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI----SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred eeeeccCcceEEEEecCCcEEEEEecccccchhhh----cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 88999999999999999999999998765433221 2223468999999999987654 455555668899999766
Q ss_pred ceEEEEee-------cC-CcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 733 LVHKFKGF-------RN-TNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 733 ~~~~~~~~-------~~-~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
........ .+ ...+...+|+.++.-+.+.+++. ++=|++...
T Consensus 284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~sr 333 (344)
T KOG4532|consen 284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILSR 333 (344)
T ss_pred CceeeEEecCccccccccccccccccccCCCcccccccchh-hheeecccc
Confidence 43322111 11 23366777877777666665543 556666543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.8e-05 Score=90.22 Aligned_cols=203 Identities=7% Similarity=0.054 Sum_probs=129.1
Q ss_pred cCCCceEEEccCCCCEEEEEecCCc-E-EEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEE-EEC
Q 002407 555 LSDKPICSFQGHLDDVLDLSWSKSQ-H-LLSSSMD---KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFIS-GSL 628 (927)
Q Consensus 555 ~s~k~i~~l~gH~~~V~~l~~spd~-~-L~Sgs~D---gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~s-gs~ 628 (927)
..+...+.+.... .+....|+|++ . ++..+.+ ..|+++|+.+++..........+....|+| |++.|+. .+.
T Consensus 176 ~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SP-DG~~la~~~~~ 253 (419)
T PRK04043 176 YTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSK-DGSKLLLTMAP 253 (419)
T ss_pred CCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECC-CCCEEEEEEcc
Confidence 3444344343333 77889999994 3 5544443 469999999998777666666677889999 8876654 443
Q ss_pred C--CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECC-C--eEEEEECCCCeeeeecccccccccccCCCCCe
Q 002407 629 D--AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYK-G--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 629 D--g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~D-g--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
+ ..|.++|+.+++...+...........|+|||+.|+..+.. + .|+++|+.+++...... .+. .
T Consensus 254 ~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~--------~g~--~- 322 (419)
T PRK04043 254 KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF--------HGK--N- 322 (419)
T ss_pred CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc--------CCC--c-
Confidence 4 45888899888876665555444567899999988777643 3 58888888776543211 011 1
Q ss_pred EEEEEcCCCCcEEEEEECC--------CcEEEEECCcc-eEEEEeecCCcceEEEEEecCCCEEEEEECC-C--cEEEEE
Q 002407 704 TGFQFAPGSSSEVLVTSAD--------SRIRVVDGIDL-VHKFKGFRNTNSQISASLTANGRYVVSASED-S--YVYVWK 771 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs~D--------g~I~VwD~~~~-~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D-g--~I~IWd 771 (927)
...|+|+|+.++++.... ..|.+.|.... ...+... .......|+|||++|+..+.+ + .|.+.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 248999998555554433 36777774322 2222221 123357899999988776643 2 255666
Q ss_pred CCC
Q 002407 772 YEA 774 (927)
Q Consensus 772 l~s 774 (927)
+..
T Consensus 399 l~g 401 (419)
T PRK04043 399 LNY 401 (419)
T ss_pred cCC
Confidence 654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.5e-05 Score=85.50 Aligned_cols=177 Identities=11% Similarity=0.048 Sum_probs=109.9
Q ss_pred CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEEC----------CCcEEEEeCCCCcEEEeccCCCc------
Q 002407 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL----------DAKVRIWSIPERQVVDWNDLHEM------ 651 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~----------Dg~I~IWDl~t~~~v~~~~~~~~------ 651 (927)
++|.+.|..+++.+..+.-...-..+ ++| +++.|+++.. +..|.+||+.+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 89999999999999988744444445 999 8888777655 78899999999998876665333
Q ss_pred --EEEEEECCCCCEEEEEE-C-CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 652 --VTAACYTPDGQGALVGS-Y-KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 652 --V~sla~spdg~~l~tgs-~-Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
...++++|||++|++.. . +..|.++|+.+++.+.++.+.-.. .......-..+..+.|+....++-..+|+..+
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~--~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY--HIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc--EEEEecCCccEEEeecCceEEEEecCCCceEE
Confidence 34889999999999876 3 688999999999998876531100 00001111112233344322223333333221
Q ss_pred EECCcceEEEEeecC-CcceE-EEEEec-CCCEEEEEECCCcEEEEECCCCC
Q 002407 728 VDGIDLVHKFKGFRN-TNSQI-SASLTA-NGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 728 wD~~~~~~~~~~~~~-~~~v~-sv~fsp-dg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
.....+.. ..++. .-.|.+ +|+++....+ |+|++-|+....
T Consensus 183 -------~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~ 226 (352)
T TIGR02658 183 -------KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGD 226 (352)
T ss_pred -------eeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCc
Confidence 11111000 00000 003455 8888877766 999999976643
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-05 Score=91.17 Aligned_cols=185 Identities=16% Similarity=0.193 Sum_probs=144.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceEEEEEc------c-------------CCCCEEEEEECCCcEEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS----HSDYVTCIQFN------P-------------VDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~----h~~~V~~v~fs------p-------------~dg~~L~sgs~Dg~I~IW 635 (927)
.+++....||.+++|+...++....|. ..+..++..|. | .+...++-|...|.|.+|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 678999999999999999998887775 34445555552 1 134568888889999999
Q ss_pred eCCCCcEEEec---cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC
Q 002407 636 SIPERQVVDWN---DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 636 Dl~t~~~v~~~---~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
++..+++...+ .|.+.|.++.++.+-..|.+++.|+.+..|+.........+ ......+.+++.+||+
T Consensus 86 s~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~---------~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 86 SVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW---------KEQKPLVSSLCISPDG 156 (541)
T ss_pred EecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee---------ccCCCccceEEEcCCC
Confidence 99999887644 46689999999999999999999999999999998887765 3666778999999997
Q ss_pred CcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecC-----CCEEEEE-ECCCcEEEEECCCC
Q 002407 713 SSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTAN-----GRYVVSA-SEDSYVYVWKYEAE 775 (927)
Q Consensus 713 ~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspd-----g~~Lasg-s~Dg~I~IWdl~s~ 775 (927)
. .+++++ ++|++||..+.........|.++|.+++|..+ |.+++++ ..+..|.+|-+...
T Consensus 157 ~-~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 157 K-ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred C-EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 6 555554 67999997655444444456788999999877 6676654 45666889988764
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.47 E-value=6e-05 Score=79.65 Aligned_cols=187 Identities=14% Similarity=0.223 Sum_probs=116.1
Q ss_pred EEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--------cCCceEEEEEccCC-----CCEEEEEECCCcEEEEe
Q 002407 571 LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--------HSDYVTCIQFNPVD-----DRYFISGSLDAKVRIWS 636 (927)
Q Consensus 571 ~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--------h~~~V~~v~fsp~d-----g~~L~sgs~Dg~I~IWD 636 (927)
..++|+|| ..||.+...|+|+++|+....+. .+. ....|..|.|.+.. ...|++-..+|.++-|-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 46899999 67888888999999998764433 332 33567777776522 22567777888888777
Q ss_pred CCCCc---E--E---Eec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE
Q 002407 637 IPERQ---V--V---DWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 637 l~t~~---~--v---~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
+..+. . . ... .....|+++.|+|..+.|++|+.... ..+. .++....+++-.
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-------------s~a~~~GLtaWR 186 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM-------------SKASSCGLTAWR 186 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc-------------ccccccCceEEE
Confidence 64321 1 1 111 23568999999999998888875432 0000 013334555555
Q ss_pred EcCCCCcEEEEEECCCcE-------EEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 708 FAPGSSSEVLVTSADSRI-------RVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 708 fspdg~~~Llsgs~Dg~I-------~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
...+.+.+..+...+..+ .+|.......-.........|..+.+||||++||+...+|.|.+|++.+-..
T Consensus 187 iL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 187 ILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred EcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 555555444444333222 2222111111111123456788999999999999999999999999987543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.7e-07 Score=104.19 Aligned_cols=210 Identities=19% Similarity=0.300 Sum_probs=146.7
Q ss_pred eecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeee
Q 002407 452 IQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~-~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~ 530 (927)
|.||..+|+.|.|.|... .||+++.|-.|+.||+.....
T Consensus 110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~---------------------------------------- 149 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR---------------------------------------- 149 (1081)
T ss_pred EecCccceeccccCCCCCcceeeccccccceeeeccCCCc----------------------------------------
Confidence 579999999999999654 899999999999999865421
Q ss_pred cccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc-EEEEEe-cC
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT-CLKIFS-HS 607 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~-~~~~~~-h~ 607 (927)
++..+..-......++|+-. ..+++.+..+.|++||.+.+. ++..+. |.
T Consensus 150 ----------------------------p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~v 201 (1081)
T KOG0309|consen 150 ----------------------------PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHV 201 (1081)
T ss_pred ----------------------------ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccc
Confidence 11112222234456778754 777888888899999998764 445554 88
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCC--cEEEeccCCCcEEEEEECCCCCEEEEEEC--CCeEEEEECCCCee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--QVVDWNDLHEMVTAACYTPDGQGALVGSY--KGSCHLYNTSENKL 683 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--~~v~~~~~~~~V~sla~spdg~~l~tgs~--Dg~I~IwDl~~~~~ 683 (927)
..|+.+.|+......+.+++.|++|+.||.... +..........|....|.|-|+..++--. +..+.+++.++...
T Consensus 202 s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~ 281 (1081)
T KOG0309|consen 202 SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDL 281 (1081)
T ss_pred eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhh
Confidence 899999998766677999999999999998653 33345566678888889997665444222 23555665544332
Q ss_pred e-eecccccccccccCCCCCeEEEEEcCCC---------CcEEEEEECCCcEEEEE
Q 002407 684 Q-QKSPINLQNKKKRSHQRKITGFQFAPGS---------SSEVLVTSADSRIRVVD 729 (927)
Q Consensus 684 ~-~~~~i~~~~~~~~~h~~~Vtsl~fspdg---------~~~Llsgs~Dg~I~VwD 729 (927)
. ..+....+...+.+|...|..+.|-..+ ...|++-+.|..+++|-
T Consensus 282 e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 282 EWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred hhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 2 1122222334456888888877775432 24799999999999997
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00011 Score=84.32 Aligned_cols=188 Identities=11% Similarity=0.032 Sum_probs=117.9
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEE----
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVT---- 653 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~---- 653 (927)
++.++.++.++.|..+|..+++.+........+.+.-.. .+..++.+..++.|..||..+++.+-.........
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 467888889999999999999988776644444322111 24567778889999999999998765444332211
Q ss_pred --EEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCC---e-EEEEEcCCCCcEEEEEECCCcEEE
Q 002407 654 --AACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK---I-TGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 654 --sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~---V-tsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
...+ .+..++++..++.+..+|+.+++......+..... ...... + ....+. +. .+++++.++.++.
T Consensus 183 ~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g--~~~~~~~~~~~~~p~~~--~~-~vy~~~~~g~l~a 255 (377)
T TIGR03300 183 SASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG--RTELERLVDVDGDPVVD--GG-QVYAVSYQGRVAA 255 (377)
T ss_pred CCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCC--CCchhhhhccCCccEEE--CC-EEEEEEcCCEEEE
Confidence 1111 13467888889999999999998765433211000 000000 1 011121 22 6888889999999
Q ss_pred EECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 728 VDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 728 wD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
||..+....+..... ...... .++..|+.++.+|.|+.+|..+++..
T Consensus 256 ~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 256 LDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSEL 302 (377)
T ss_pred EECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEE
Confidence 997655444433211 111122 34667888889999999999887644
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00064 Score=85.95 Aligned_cols=294 Identities=14% Similarity=0.182 Sum_probs=174.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEeC---C---CcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 455 HNGSIWSIKFSLDGRYLASAGE---D---CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~---D---gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
+...-..|+|-.||.|+|+.+. . ..||||+-+ |..... .....+.-..++|.|.|.++|+......-
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~st-----SE~v~gLe~~l~WrPsG~lIA~~q~~~~~- 280 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQST-----SEPVDGLEGALSWRPSGNLIASSQRLPDR- 280 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEec-----cccCCCccCCccCCCCCCEEEEEEEcCCC-
Confidence 3445567999999999998764 2 579999864 332211 12233334578999999999887431100
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEE----ccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEE--
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF----QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL-- 601 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l----~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~-- 601 (927)
..+ .+|.-++-....| ......|..|.|+++ ..|+..- ...|.+|-..+-...
T Consensus 281 ---------------~~V----vFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~-~~~vqLWt~~NYHWYLK 340 (928)
T PF04762_consen 281 ---------------HDV----VFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL-EDRVQLWTRSNYHWYLK 340 (928)
T ss_pred ---------------cEE----EEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe-cCCceEEEeeCCEEEEE
Confidence 000 1222233222222 234567999999999 4555544 445999998876532
Q ss_pred EEE--ecCCceEEEEEccCCCCEEEEEECCCcEEEEeC----CCC----------------cEE----------------
Q 002407 602 KIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI----PER----------------QVV---------------- 643 (927)
Q Consensus 602 ~~~--~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl----~t~----------------~~v---------------- 643 (927)
+.+ .....+..+.|+|.+...|...+.+|.+..+++ ..+ ..+
T Consensus 341 qei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~ 420 (928)
T PF04762_consen 341 QEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSS 420 (928)
T ss_pred EEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhc
Confidence 222 234456669999977888888888777765543 111 111
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee--------ecccc-cccccccCCCCCeEEEEEcCCCCc
Q 002407 644 DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ--------KSPIN-LQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 644 ~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~--------~~~i~-~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
..+..+..|..++|++++..+++-..||.|.+|......... .+... ............+..++|..+..
T Consensus 421 ~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 499 (928)
T PF04762_consen 421 YELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDT- 499 (928)
T ss_pred eEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCE-
Confidence 123344689999999999889999999999999865433221 11000 00001112345678888887764
Q ss_pred EEEEEEC---CCcEEEEECCc---ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 715 EVLVTSA---DSRIRVVDGID---LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 715 ~Llsgs~---Dg~I~VwD~~~---~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
++++... ...|.+++... .............+..+...++...++.-..+|.|+..+.....
T Consensus 500 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 500 LLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred EEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence 4444443 36777777532 22222222234445555555555556777789999876665543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.3e-05 Score=78.91 Aligned_cols=193 Identities=17% Similarity=0.140 Sum_probs=123.7
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCC----Cc
Q 002407 577 KSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLH----EM 651 (927)
Q Consensus 577 pd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~----~~ 651 (927)
.++.+++++.++.|..||..+|+.+..+.....+...... .+..++.+..++.|+.+|..+++++-.. ... ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 3578888899999999999999998888744433222222 4556777778889999999999887542 211 11
Q ss_pred EEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccccc-CCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 652 VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKR-SHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 652 V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~-~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
........++..++++..++.|..+|+.+++.+............. .....+..-....++ .++++..++.+..+|.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~d~ 190 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAVDL 190 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEEET
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEEEC
Confidence 2223333348889999999999999999999987765421100000 001112233333333 6777777776444487
Q ss_pred CcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 731 IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 731 ~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
......+... ...... ....++..|+.++.++.|++||+++++
T Consensus 191 ~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 191 ATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp TTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred CCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 7666555332 222222 245677888888899999999999875
|
... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.1e-06 Score=88.14 Aligned_cols=238 Identities=17% Similarity=0.246 Sum_probs=139.5
Q ss_pred ecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCC------------CCEEEEEEcCCCC--EEEEEeCCCcEEE
Q 002407 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN------------GSIWSIKFSLDGR--YLASAGEDCVIHV 482 (927)
Q Consensus 417 ~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~------------~~I~~vafSpdG~--~LaSgs~DgtVrV 482 (927)
.+....++.+|..+|+|.+|......--.-....++++|. ..|..|.|-.++. .++..+.|.+|++
T Consensus 34 fd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKl 113 (460)
T COG5170 34 FDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKL 113 (460)
T ss_pred eccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeee
Confidence 3444577899999999999975432211111123466665 3678888876543 4555668999999
Q ss_pred EecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEE
Q 002407 483 WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS 562 (927)
Q Consensus 483 Wdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~ 562 (927)
|.+.+............. .+.+.-.|.++ ..+.+..........+. ..++.+.
T Consensus 114 WKiyeknlk~va~nnls~-------~~~~~~~g~~~------------------s~~~l~lprls~hd~ii--aa~p~rv 166 (460)
T COG5170 114 WKIYEKNLKVVAENNLSD-------SFHSPMGGPLT------------------STKELLLPRLSEHDEII--AAKPCRV 166 (460)
T ss_pred eeeecccchhhhcccccc-------ccccccCCCcC------------------CHHHhhcccccccceEE--Eecccee
Confidence 998654321110000000 00000001100 00011111110000111 1133333
Q ss_pred E-ccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCc-EEEEE---ec-----CCceEEEEEccCCCCEEEEEECCCcE
Q 002407 563 F-QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKT-CLKIF---SH-----SDYVTCIQFNPVDDRYFISGSLDAKV 632 (927)
Q Consensus 563 l-~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~-~~~~~---~h-----~~~V~~v~fsp~dg~~L~sgs~Dg~I 632 (927)
+ ..|.-.|.+|.+..+...+..+.|=.|.+|++.-.. +..+. +| +.-|++..|+|...+.|.-.+..|.|
T Consensus 167 yaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 167 YANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred ccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 3 568889999999999666666778889999987432 22221 22 34689999999777788888889999
Q ss_pred EEEeCCCCcEEE--------e---------ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCe
Q 002407 633 RIWSIPERQVVD--------W---------NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 633 ~IWDl~t~~~v~--------~---------~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~ 682 (927)
++-|++...+-. . ...-..|..+.|+++|+++++-. --+++|||++..+
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k 312 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAK 312 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccccc
Confidence 999998532210 0 11114678899999999888764 4689999998644
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.7e-06 Score=98.07 Aligned_cols=284 Identities=15% Similarity=0.202 Sum_probs=168.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccc
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~ 535 (927)
.+++..+.++|.|+-+|.++.-|. .|-|+...-....++... ..-.+..+.|++.... .
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~---tpw~vad~qws~h~a~-----------------~ 82 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHI---TPWQVADVQWSPHPAK-----------------P 82 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeecc---CcchhcceecccCCCC-----------------c
Confidence 466888999999999999987764 455666544333332111 1111222333332110 0
Q ss_pred ccccccccCcccccceEeec----CCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCc-EEEEEe-cC
Q 002407 536 INRKSLSLDHMVVPETVFAL----SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT-CLKIFS-HS 607 (927)
Q Consensus 536 ~~~~~~~~~~~~~~~~v~~~----s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~-~~~~~~-h~ 607 (927)
....+.+.... .+|.+ +......+.||...|+++.|+++ ..|++++.|-.|..||+++.. ++..+. -.
T Consensus 83 ~wiVsts~qka----iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~ 158 (1081)
T KOG0309|consen 83 YWIVSTSNQKA----IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR 158 (1081)
T ss_pred eeEEecCcchh----hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc
Confidence 00000000000 01111 22334567899999999999998 679999999999999999764 333333 44
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc-EEEe-ccCCCcEEEEEECC-CCCEEEEEECCCeEEEEECCCCeee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-VVDW-NDLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~-~v~~-~~~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
.....|+|+-.+++.+++ +....|++||++.+. ++.+ ..+-..|+.+.|.. ....+.+.+.|++|++||.......
T Consensus 159 s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 159 SAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred ccCceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence 566789999867766554 455679999998764 3333 33445677777765 3346888899999999998765443
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEE------------ECCcceEEEEeecCCcceEEEEE
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS-ADSRIRVV------------DGIDLVHKFKGFRNTNSQISASL 751 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs-~Dg~I~Vw------------D~~~~~~~~~~~~~~~~v~sv~f 751 (927)
.... .....+|.--.+.|-|..+++--. .+..+.++ |....+..|.+|. ..|..+.|
T Consensus 238 ~~~~--------vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~--D~V~eFlW 307 (1081)
T KOG0309|consen 238 SKRT--------VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD--DVVLEFLW 307 (1081)
T ss_pred ccee--------ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcc--hHHHHHhh
Confidence 3322 133345555555555443222211 11123332 2445566666653 33444433
Q ss_pred ec--------C--CCEEEEEECCCcEEEEECCCC
Q 002407 752 TA--------N--GRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 752 sp--------d--g~~Lasgs~Dg~I~IWdl~s~ 775 (927)
-. | .-.|+|-+.|..+++|-+.+.
T Consensus 308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 22 2 226999999999999999763
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00047 Score=74.08 Aligned_cols=182 Identities=12% Similarity=0.151 Sum_probs=118.5
Q ss_pred EEEEEec-CCcEEEEEeCCCcEEEEeCCCCcEEEEEec------CCceEEEEEccCCCCEEEEEECC--------CcEEE
Q 002407 570 VLDLSWS-KSQHLLSSSMDKTVRLWHLSSKTCLKIFSH------SDYVTCIQFNPVDDRYFISGSLD--------AKVRI 634 (927)
Q Consensus 570 V~~l~~s-pd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h------~~~V~~v~fsp~dg~~L~sgs~D--------g~I~I 634 (927)
...+++. +++.|+.+...+. .++|+.+++....+.. ....+.+++.| ++++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence 5566666 6688888877555 5559998866555542 34678999999 89877776654 55777
Q ss_pred EeCCCCcEEEeccCCCcEEEEEECCCCCEEEE-EECCCeEEEEECCCCe--eeeecccccccccccCCCCCeEEEEEcCC
Q 002407 635 WSIPERQVVDWNDLHEMVTAACYTPDGQGALV-GSYKGSCHLYNTSENK--LQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 635 WDl~t~~~v~~~~~~~~V~sla~spdg~~l~t-gs~Dg~I~IwDl~~~~--~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
++.. ++.......-...+.++|+|+++.|++ -+..+.|..|++.... +.....+ .. ........-.+++..+
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~-~~---~~~~~g~pDG~~vD~~ 194 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF-ID---FPGGPGYPDGLAVDSD 194 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE-EE----SSSSCEEEEEEEBTT
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeE-EE---cCCCCcCCCcceEcCC
Confidence 7777 665555555567899999999997764 5667889999986322 2211111 00 0122235788999998
Q ss_pred CCcEEEEEECCCcEEEEECC-cceEEEEeecCCcceEEEEEe-cCCCEEEEE
Q 002407 712 SSSEVLVTSADSRIRVVDGI-DLVHKFKGFRNTNSQISASLT-ANGRYVVSA 761 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD~~-~~~~~~~~~~~~~~v~sv~fs-pdg~~Lasg 761 (927)
|. ++++....+.|.++|.. +.+..+... ...+++++|. ++.+.|+..
T Consensus 195 G~-l~va~~~~~~I~~~~p~G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 195 GN-LWVADWGGGRIVVFDPDGKLLREIELP--VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp S--EEEEEETTTEEEEEETTSCEEEEEE-S--SSSEEEEEEESTTSSEEEEE
T ss_pred CC-EEEEEcCCCEEEEECCCccEEEEEcCC--CCCEEEEEEECCCCCEEEEE
Confidence 86 66666788999999965 334444433 3478899994 665555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-06 Score=65.42 Aligned_cols=37 Identities=41% Similarity=0.658 Sum_probs=34.8
Q ss_pred eeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 002407 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484 (927)
Q Consensus 448 ~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWd 484 (927)
+.+++++|.+.|++|+|+|++.+||||+.|++|+|||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3567899999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00012 Score=84.90 Aligned_cols=146 Identities=12% Similarity=0.062 Sum_probs=90.1
Q ss_pred EEEEEecCCc-EE-EEEeCC--CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEEC-CC--cEEEEeCCCCcE
Q 002407 570 VLDLSWSKSQ-HL-LSSSMD--KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL-DA--KVRIWSIPERQV 642 (927)
Q Consensus 570 V~~l~~spd~-~L-~Sgs~D--gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~-Dg--~I~IWDl~t~~~ 642 (927)
+....|+||+ .| ++.+.+ ..|.++|+.+++......+........|+| |++.|+..+. .+ .|.+.|+.+++.
T Consensus 235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSV 313 (419)
T ss_pred EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCe
Confidence 4455688883 33 333333 468888988887655444444345668999 8887776654 33 488889988877
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEECC---------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 643 VDWNDLHEMVTAACYTPDGQGALVGSYK---------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 643 v~~~~~~~~V~sla~spdg~~l~tgs~D---------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
......... ...|+|||++|+..... ..|.+.|+.++...... .. .......|+|+|.
T Consensus 314 ~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT----------~~-~~~~~p~~SPDG~ 380 (419)
T PRK04043 314 EQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLT----------AN-GVNQFPRFSSDGG 380 (419)
T ss_pred EeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECC----------CC-CCcCCeEECCCCC
Confidence 554332222 24899999998877654 36888898887643321 11 1223578999998
Q ss_pred cEEEEEECCCc--EEEEE
Q 002407 714 SEVLVTSADSR--IRVVD 729 (927)
Q Consensus 714 ~~Llsgs~Dg~--I~VwD 729 (927)
.++++....+. |.+.+
T Consensus 381 ~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 381 SIMFIKYLGNQSALGIIR 398 (419)
T ss_pred EEEEEEccCCcEEEEEEe
Confidence 54444433333 44444
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00031 Score=90.20 Aligned_cols=204 Identities=13% Similarity=0.129 Sum_probs=130.5
Q ss_pred EEEEecCC-c-EEEEEeCCCcEEEEeCCCCcEEEEEec---------------CCceEEEEEccCCCCEEEEEE-CCCcE
Q 002407 571 LDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIFSH---------------SDYVTCIQFNPVDDRYFISGS-LDAKV 632 (927)
Q Consensus 571 ~~l~~spd-~-~L~Sgs~DgtV~lWDl~t~~~~~~~~h---------------~~~V~~v~fsp~dg~~L~sgs-~Dg~I 632 (927)
..+++++. + .+++-+..+.|++||... ..+..+.- -.....|++.+ +++.|+++. ..+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 45677764 4 455666778899999864 44433331 12357899998 777665554 45679
Q ss_pred EEEeCCCCcEEEeccC-----------------CCcEEEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeeccc----c
Q 002407 633 RIWSIPERQVVDWNDL-----------------HEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPI----N 690 (927)
Q Consensus 633 ~IWDl~t~~~v~~~~~-----------------~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i----~ 690 (927)
+++|+.++.+..+... -.....++++| ++..+++...++.|++||..++.......- .
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 9999888765433210 12356899999 566666777788999999988765321100 0
Q ss_pred ccc-ccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEE-Ee-----------ec---------CCcceEE
Q 002407 691 LQN-KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF-KG-----------FR---------NTNSQIS 748 (927)
Q Consensus 691 ~~~-~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~-~~-----------~~---------~~~~v~s 748 (927)
... ............|+|+|++..++++-+.++.|++||........ .+ .. .......
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 000 00001223567899999988677777888999999965322111 10 00 0112357
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 749 ASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 749 v~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
++++++|+++++-..++.|++||..++.
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 8999999988888899999999998754
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.4e-05 Score=82.70 Aligned_cols=184 Identities=14% Similarity=0.226 Sum_probs=112.4
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCcEE-EEEe--cCCceEEEEEccCCCCEEEEEEC-----CCcEEEEeCCCCcEEE-ecc
Q 002407 577 KSQHLLSSSMDKTVRLWHLSSKTCL-KIFS--HSDYVTCIQFNPVDDRYFISGSL-----DAKVRIWSIPERQVVD-WND 647 (927)
Q Consensus 577 pd~~L~Sgs~DgtV~lWDl~t~~~~-~~~~--h~~~V~~v~fsp~dg~~L~sgs~-----Dg~I~IWDl~t~~~v~-~~~ 647 (927)
++..++++..||.+.+++.+.-..+ ..+. |.+.. +.++.. .+++|.++.. -+..+.|+++..+.+. ...
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~a-s~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~ 177 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSA-SRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK 177 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccccccccc-ccceee-cccEEecCCcceEeeccceeeeccccccccccccc
Confidence 3467999999999999987752111 1111 11111 111111 2333433321 2345667765543322 222
Q ss_pred CCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 648 LHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 648 ~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
..+.|++++-+|.. ..+++|+.||.+-+||.+.......+ .+.|...|..+.|+|.++..|+++++||.+.
T Consensus 178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~--------l~ahk~~i~eV~FHpk~p~~Lft~sedGslw 249 (319)
T KOG4714|consen 178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL--------LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLW 249 (319)
T ss_pred ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH--------HHHhhhhhhheeccCCCchheeEecCCCcEE
Confidence 22459999999954 56778899999999999987433322 2589999999999999999999999999999
Q ss_pred EEECCc-ceEE---------------------EEeecCCcceEE-EEEecCCCEEEEEECCCcEEEEE
Q 002407 727 VVDGID-LVHK---------------------FKGFRNTNSQIS-ASLTANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 727 VwD~~~-~~~~---------------------~~~~~~~~~v~s-v~fspdg~~Lasgs~Dg~I~IWd 771 (927)
.||... .+.. +...... ...+ -.|.--|..|++|+.-+.||+++
T Consensus 250 ~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~-~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 250 HWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPS-RSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EEcCCCceEEecCccccccccccCCcccceEeeeccccc-cceeeeeeeccCceEEeccccceEEEec
Confidence 999442 1110 0000000 0011 13344577888888888888875
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.5e-05 Score=87.13 Aligned_cols=156 Identities=15% Similarity=0.224 Sum_probs=107.0
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEeCCCC----cEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEEC---CCCeee
Q 002407 612 CIQFNPVDDRYFISGSLDAKVRIWSIPER----QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNT---SENKLQ 684 (927)
Q Consensus 612 ~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~----~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl---~~~~~~ 684 (927)
.+.++| .+++|+.+..+....++++... +++.........+++.|..+...+.++...|.++-+|+ ..+...
T Consensus 67 ~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 67 LVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred ccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence 344566 7777877777777666666543 33444455556667777777777776665555555444 333333
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC--cceEEEEeecCCcceEEEEEecCCCEEEEEE
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI--DLVHKFKGFRNTNSQISASLTANGRYVVSAS 762 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~--~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs 762 (927)
.. .+|-..++.++|+||+. +|+++..|..|+|-... ..+..|- ..|...|..+++-++ ..|++++
T Consensus 146 ~~----------lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~Iesfc-lGH~eFVS~isl~~~-~~LlS~s 212 (390)
T KOG3914|consen 146 PI----------LGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFC-LGHKEFVSTISLTDN-YLLLSGS 212 (390)
T ss_pred hh----------hhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhc-cccHhheeeeeeccC-ceeeecC
Confidence 22 48999999999999986 89999999999996532 1222222 235566777777655 5699999
Q ss_pred CCCcEEEEECCCCCCcccc
Q 002407 763 EDSYVYVWKYEAESRPSRS 781 (927)
Q Consensus 763 ~Dg~I~IWdl~s~~~~~~~ 781 (927)
.|++|++||+.+++.+...
T Consensus 213 GD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred CCCcEEEEecccCCccccc
Confidence 9999999999999877543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0013 Score=76.01 Aligned_cols=178 Identities=10% Similarity=0.020 Sum_probs=109.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCc--------eEEEEEcc-CCCCEEEEEECCCcEEEEeCCCCcEEEeccCC
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY--------VTCIQFNP-VDDRYFISGSLDAKVRIWSIPERQVVDWNDLH 649 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~--------V~~v~fsp-~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~ 649 (927)
+.++.++.++.+..+|..+++.+..+....+ ...+..+| ..+..++.++.+|.+..+|..+++.+-.....
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~ 285 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG 285 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence 5677788899999999999887765532111 11111122 12456777788999999999999876433322
Q ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
. ...+. ..+..|++++.+|.+..+|..+++.+..... .......+.... ++ .|++++.+|.|+++|
T Consensus 286 ~-~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--------~~~~~~~sp~v~-~g--~l~v~~~~G~l~~ld 351 (394)
T PRK11138 286 S-VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSD--------LLHRLLTAPVLY-NG--YLVVGDSEGYLHWIN 351 (394)
T ss_pred C-ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccc--------cCCCcccCCEEE-CC--EEEEEeCCCEEEEEE
Confidence 2 11122 2466788888999999999999876543221 001111222222 22 688899999999999
Q ss_pred CCcceEEEEeecCCcceE-EEEEecCCCEEEEEECCCcEEEEEC
Q 002407 730 GIDLVHKFKGFRNTNSQI-SASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 730 ~~~~~~~~~~~~~~~~v~-sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
..+.....+.......+. ...+ .+..|+.++.||.|+.+++
T Consensus 352 ~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 352 REDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 655444333322222222 1222 2457888899999998865
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.1e-06 Score=90.45 Aligned_cols=152 Identities=14% Similarity=0.191 Sum_probs=118.7
Q ss_pred EEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCe
Q 002407 624 ISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 624 ~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
++.+.+..|-+-|+.++.... +.....|.++.|.-.+..+..|+..|.|..+|++....-.... .....|...|
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~-----a~rlyh~Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC-----AQRLYHDSSV 301 (425)
T ss_pred ecccccceeEEEEeecccccc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc-----eEEEEcCcch
Confidence 555667788899998876544 4467789999999989999999999999999998752111110 1113788999
Q ss_pred EEEEEcCCCCcEEEEEECCCcEEEEECCc-----ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 704 TGFQFAPGSSSEVLVTSADSRIRVVDGID-----LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs~Dg~I~VwD~~~-----~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
++++...-....|++.+.+|+|.+||.+- .+..+.+|.+...-.-+.+.+....|++++.|...+||.++.+..+
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence 99988774445899999999999999542 3678888887776667778888889999999999999999987765
Q ss_pred ccc
Q 002407 779 SRS 781 (927)
Q Consensus 779 ~~~ 781 (927)
...
T Consensus 382 ~ti 384 (425)
T KOG2695|consen 382 CTI 384 (425)
T ss_pred ecc
Confidence 544
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.4e-06 Score=89.82 Aligned_cols=208 Identities=13% Similarity=0.166 Sum_probs=150.0
Q ss_pred cCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEE---EEEe-cCCceEEEEEccCCCCEEEEEEC-CCcEEEEeCCC
Q 002407 565 GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCL---KIFS-HSDYVTCIQFNPVDDRYFISGSL-DAKVRIWSIPE 639 (927)
Q Consensus 565 gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~---~~~~-h~~~V~~v~fsp~dg~~L~sgs~-Dg~I~IWDl~t 639 (927)
.|.+.|+.+.....+++++++.||.++.|.-..-.-+ +.+. |-..|..++.+- ++.++.+.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeec
Confidence 4888899888777799999999999999986542222 2222 778888898888 8999999777 99999999988
Q ss_pred CcEEEeccCCCcEEEEEECC-CC--C-EEEEE-ECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 640 RQVVDWNDLHEMVTAACYTP-DG--Q-GALVG-SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 640 ~~~v~~~~~~~~V~sla~sp-dg--~-~l~tg-s~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
-..+..+........++|.- .| . .|+++ -.++.+.++|-....+...+. ..-|..+|..+.+.+.+.
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f-------kklH~sPV~~i~y~qa~D- 157 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF-------KKLHFSPVKKIRYNQAGD- 157 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee-------cccccCceEEEEeecccc-
Confidence 76665444444333344432 22 1 33333 457889999977654332221 257899999999999887
Q ss_pred EEEEEECCCcEEEEECCcc---------------eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 715 EVLVTSADSRIRVVDGIDL---------------VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 715 ~Llsgs~Dg~I~VwD~~~~---------------~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
.+++....|.|.-|..... ...+..........++.|+|+|..+.+-+.|..|+++.+.++....
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 5777778899999985421 0112223345667889999999999999999999999999987654
Q ss_pred cc
Q 002407 780 RS 781 (927)
Q Consensus 780 ~~ 781 (927)
..
T Consensus 238 ei 239 (558)
T KOG0882|consen 238 EI 239 (558)
T ss_pred hh
Confidence 33
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.7e-05 Score=82.03 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=61.3
Q ss_pred CEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEE-Ee-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC
Q 002407 569 DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKI-FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE 639 (927)
Q Consensus 569 ~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~-~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t 639 (927)
.|++++-+|. ..+++|+.||.|-+||++....... +. |+.+|+.+-|+|.++..|++++.||.+..||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 4889998886 6788999999999999998744332 23 9999999999999999999999999999999765
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.5e-06 Score=88.63 Aligned_cols=145 Identities=14% Similarity=0.241 Sum_probs=109.9
Q ss_pred eEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC-----cEEEEEecCCceEEEEEccCCCCEEEEEECCCcEE
Q 002407 560 ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK-----TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVR 633 (927)
Q Consensus 560 i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~-----~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~ 633 (927)
.+.|. -.+.|.++.|... +.++.|+..|.|...|++.+ .+.+.+-|...|++++....++.+|++.+.+|+|+
T Consensus 246 ~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkik 324 (425)
T KOG2695|consen 246 QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIK 324 (425)
T ss_pred ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCcee
Confidence 33344 5678999999884 88999999999999999864 57778889999999998776788999999999999
Q ss_pred EEeCCCCcE---EEeccCC-C--cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE
Q 002407 634 IWSIPERQV---VDWNDLH-E--MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 634 IWDl~t~~~---v~~~~~~-~--~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
+||++--++ +.....| . ...-+.+.+....+++++.|-..+||.++.+.++.+.+... ......+.+++
T Consensus 325 LyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~-----s~~e~d~~sv~ 399 (425)
T KOG2695|consen 325 LYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY-----SASEVDIPSVA 399 (425)
T ss_pred EeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCC-----cccccccccee
Confidence 999987655 4433332 1 22334456677788889999999999999999988866432 12333556666
Q ss_pred EcC
Q 002407 708 FAP 710 (927)
Q Consensus 708 fsp 710 (927)
|..
T Consensus 400 ~~s 402 (425)
T KOG2695|consen 400 FDS 402 (425)
T ss_pred hhc
Confidence 654
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-05 Score=87.86 Aligned_cols=264 Identities=14% Similarity=0.153 Sum_probs=169.9
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecCcCcccceeecccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~-DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
.+++..++.++.++.|.+.- .......+.+.+|-+.|.+++.+-+|.+++|.+. |..++++|+++-..+.-+....
T Consensus 20 a~fiiqASlDGh~KFWkKs~--isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~- 96 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSR--ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD- 96 (558)
T ss_pred hheEEeeecchhhhhcCCCC--ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc-
Confidence 45778889999999998763 2333444667889999999999999999999887 9999999997654332211000
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
-.+.+. +..++.
T Consensus 97 ------------------------------------------------------------------lPg~a~-wv~skGd 109 (558)
T KOG0882|consen 97 ------------------------------------------------------------------LPGFAE-WVTSKGD 109 (558)
T ss_pred ------------------------------------------------------------------CCCceE-EecCCCC
Confidence 000111 111121
Q ss_pred --cEEEE-EeCCCcEEEEeCCCCcEE-EEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC------CcE----
Q 002407 579 --QHLLS-SSMDKTVRLWHLSSKTCL-KIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE------RQV---- 642 (927)
Q Consensus 579 --~~L~S-gs~DgtV~lWDl~t~~~~-~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t------~~~---- 642 (927)
..|+. .-.++.|.++|-...-+. ..+. |..+|.++.++| .++.+++....|.|..|.... .++
T Consensus 110 ~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~ 188 (558)
T KOG0882|consen 110 KISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFEL 188 (558)
T ss_pred eeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccc
Confidence 12333 345688999997765533 3333 999999999999 888999999999999998763 111
Q ss_pred ------EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccc-ccCCCCCeEEEEEcCCCCcE
Q 002407 643 ------VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK-KRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 643 ------v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~-~~~h~~~Vtsl~fspdg~~~ 715 (927)
..+...+...+++.|+|+|..+.+-..|..|+++++.++++.+.+.-...... .......+..+.|...
T Consensus 189 K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRR---- 264 (558)
T KOG0882|consen 189 KHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRR---- 264 (558)
T ss_pred cccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhh----
Confidence 11223345788999999999999999999999999999998876532111000 0011222333333221
Q ss_pred EEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 716 VLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
+++ ...+.- ......+.++|...|++|+-++-=| |++.++.++.
T Consensus 265 mav---------------erelek-~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 265 MAV---------------ERELEK-HGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred hhH---------------HhhHhh-hcCcccceeEEcCCCCEEEeeccee-EEEEEeecCe
Confidence 000 000111 1223345678888888888777655 7777777653
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0012 Score=69.95 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=72.9
Q ss_pred EEEEEeCCCcEEEEeCCC-----CcEEEEEe----cCCceEEEEEccCCCCEEEEEECC-C----------cEEEEeCCC
Q 002407 580 HLLSSSMDKTVRLWHLSS-----KTCLKIFS----HSDYVTCIQFNPVDDRYFISGSLD-A----------KVRIWSIPE 639 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t-----~~~~~~~~----h~~~V~~v~fsp~dg~~L~sgs~D-g----------~I~IWDl~t 639 (927)
.|+.-..+|.++=|-+.. .+....|. +...|.++.|+| ..++|++|+.. . -+.-|.+-+
T Consensus 111 ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~ 189 (282)
T PF15492_consen 111 ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKASSCGLTAWRILS 189 (282)
T ss_pred eEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCCCCccccccccCceEEEEcC
Confidence 466666777666665422 23334443 577899999999 66777766542 1 255666532
Q ss_pred CcE---------------------EEe---------ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccc
Q 002407 640 RQV---------------------VDW---------NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (927)
Q Consensus 640 ~~~---------------------v~~---------~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i 689 (927)
+.. ... ....+.|..|.++|||+.||+...+|.|.+|++..-++......
T Consensus 190 ~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 190 DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 210 000 12246799999999999999999999999999998777666543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.2e-05 Score=88.08 Aligned_cols=186 Identities=13% Similarity=0.163 Sum_probs=131.3
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
..+.++|++++ +++|+.|..+|.|++++..... ...+.+... ..+|.++++++.||+|.|..+-+.+...
T Consensus 38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhhHHHHHHhh---cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 44567788874 5889999999999999876543 333333332 5689999999999999999988877666
Q ss_pred ecccccccccccCCCCCeEEEEEcCC----CCcEEEEEECCCcEEEEECC--cceEEEEeecCCcceEEEEEecCCCEEE
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPG----SSSEVLVTSADSRIRVVDGI--DLVHKFKGFRNTNSQISASLTANGRYVV 759 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspd----g~~~Llsgs~Dg~I~VwD~~--~~~~~~~~~~~~~~v~sv~fspdg~~La 759 (927)
++ ....++.+++++|+ ....+++|+.-| +.++.-. ........+...++|.+++|. |.+||
T Consensus 108 ~~----------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIA 174 (846)
T KOG2066|consen 108 QY----------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIA 174 (846)
T ss_pred eE----------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEE
Confidence 54 34567899999997 233788999888 7777621 111222456678899999985 77888
Q ss_pred EEECCCcEEEEECCCCCCcccccccce------eeeeeeecCCCeEEEEecCCceeEEeecCC
Q 002407 760 SASEDSYVYVWKYEAESRPSRSKSITV------THSYEHFHCQDVSVAIPWPGVGDTWGLQDT 816 (927)
Q Consensus 760 sgs~Dg~I~IWdl~s~~~~~~~~~~~~------~~~~~~~~~~~v~vavs~~g~~~i~~~~d~ 816 (927)
-++.+| |+|||+.............. .....+|. +...+.+.|..++.+.....+
T Consensus 175 Wand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~-~~~~LVIGW~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 175 WANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ-DEDRLVIGWGDSVKICSIKKR 235 (846)
T ss_pred EecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec-CCCeEEEecCCeEEEEEEecc
Confidence 888777 99999998765543322111 11222333 456778999999988877744
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0026 Score=68.26 Aligned_cols=187 Identities=13% Similarity=0.105 Sum_probs=124.1
Q ss_pred EEEecC-CcEEEEE-eCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc--
Q 002407 572 DLSWSK-SQHLLSS-SMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-- 647 (927)
Q Consensus 572 ~l~~sp-d~~L~Sg-s~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-- 647 (927)
++.|.+ ++.|+.. -..+.|..|+..+++... +.... ...+++...++ .|+.+... .+.++|+.+++...+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeecc
Confidence 578887 4555544 468899999998876543 33333 77788873154 55555554 45666999887654333
Q ss_pred ----CCCcEEEEEECCCCCEEEEEECC--------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 648 ----LHEMVTAACYTPDGQGALVGSYK--------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 648 ----~~~~V~sla~spdg~~l~tgs~D--------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
....++.+++.|+|.+.++.... |.|..++.. ++..... ......+.++|+|+++.+
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~----------~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA----------DGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE----------EEESSEEEEEEETTSSEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe----------cCcccccceEECCcchhe
Confidence 23578899999999977765543 568888877 4433321 233557899999999866
Q ss_pred EEEEECCCcEEEEECC--cc----eEEEEeecCC-cceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 716 VLVTSADSRIRVVDGI--DL----VHKFKGFRNT-NSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~--~~----~~~~~~~~~~-~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
+++-+..+.|..|+.. .. ...+...... ...-.+++..+|++.++.-..+.|.+++.+
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 6677888999999842 11 1223222222 236689999999988888889999999987
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.5e-06 Score=99.91 Aligned_cols=218 Identities=15% Similarity=0.235 Sum_probs=147.6
Q ss_pred cceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeeccccc
Q 002407 444 TALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL 523 (927)
Q Consensus 444 ~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~ 523 (927)
+++...+.+..|+..-+|++|+-+.++|+.|+..|.|+++++.+|...... ..|...+..+.-+.+|..+.+...
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-----ncH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-----NCHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-----cccccccccccccCCcceeeeecc
Confidence 345555677899999999999999999999999999999999998755443 567777777777777665544322
Q ss_pred CCceeeecccccccccccccCcccccceEeec--CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcE
Q 002407 524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC 600 (927)
Q Consensus 524 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~--s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~ 600 (927)
...- . ..+|.+ ...+.++|.+ -.++.|+.. ..-+.|..-..+.|||++++..
T Consensus 1164 ~S~P---------------l------saLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~ 1218 (1516)
T KOG1832|consen 1164 SSSP---------------L------SALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSP 1218 (1516)
T ss_pred ccCc---------------h------HHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcH
Confidence 1110 0 012222 2234444443 356788876 4445555557789999999987
Q ss_pred EEEE-e----cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEE
Q 002407 601 LKIF-S----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675 (927)
Q Consensus 601 ~~~~-~----h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~I 675 (927)
+.++ . ....-++..|+| ++.+++ +||. +||++..+.+..++.-..-..-.|+|.|..++.-+ .|
T Consensus 1219 l~tylt~~~~~~y~~n~a~FsP-~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EI 1287 (1516)
T KOG1832|consen 1219 LQTYLTDTVTSSYSNNLAHFSP-CDTLIL---NDGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EI 1287 (1516)
T ss_pred HHHhcCcchhhhhhccccccCC-CcceEe---eCce--eeeeccHHHHhhhhhheecccccccCCCceEEeec-----hh
Confidence 7663 2 222347889999 777665 4553 79999887666554443444557999999988876 59
Q ss_pred EECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
||+++.++++..+ .-.-+.+.|+..|.
T Consensus 1288 wD~RTF~lLh~VP-----------~Ldqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1288 WDMRTFKLLHSVP-----------SLDQCAVTFNSTGD 1314 (1516)
T ss_pred hhhHHHHHHhcCc-----------cccceEEEeccCcc
Confidence 9999988876532 12234566777665
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00025 Score=82.97 Aligned_cols=202 Identities=16% Similarity=0.195 Sum_probs=147.6
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCC-----------CCEEEEEECCCcEEEE
Q 002407 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVD-----------DRYFISGSLDAKVRIW 635 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~d-----------g~~L~sgs~Dg~I~IW 635 (927)
..-.++.|+|.|.|+.|+. ..|.+-|..+-+.++.+. |...|+.+.|.|.. .-+|+++...|.|.+|
T Consensus 16 sN~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 16 SNRNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred ccccccccCccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 3366789999999988876 468889999999998888 88999999998731 1256777888999999
Q ss_pred eCCCCcEEEeccCC-CcEEEEEECC---CC-CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 636 SIPERQVVDWNDLH-EMVTAACYTP---DG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 636 Dl~t~~~v~~~~~~-~~V~sla~sp---dg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
|...+..+.++.++ +.+..++|-+ +. ..|++-....+|.+|+..+|+...++. .......|+.+.|
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~---------ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD---------YSHEILSCFRVDP 165 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc---------cCCcceeeeeeCC
Confidence 99998888777665 6788888876 34 456677778899999999999877653 4445667799999
Q ss_pred CCCcEEEEEECCCcEEEEECC------cceEEEEeecC-----------------Cc---------ceEEEEEecCCCEE
Q 002407 711 GSSSEVLVTSADSRIRVVDGI------DLVHKFKGFRN-----------------TN---------SQISASLTANGRYV 758 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~VwD~~------~~~~~~~~~~~-----------------~~---------~v~sv~fspdg~~L 758 (927)
-....+..-+..|.+.+.+.. ...+.+..... .. ....++|+|.-+-+
T Consensus 166 fd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 166 FDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred CCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 877788888888888887711 11122211111 00 01135778877767
Q ss_pred EEEECCCcEEEEECCCCCCcc
Q 002407 759 VSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 759 asgs~Dg~I~IWdl~s~~~~~ 779 (927)
+.......++|+|++-.....
T Consensus 246 lfi~~prellv~dle~~~~l~ 266 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLA 266 (1062)
T ss_pred EEEEeccceEEEcchhhceeE
Confidence 777778889999998765443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0024 Score=73.67 Aligned_cols=185 Identities=12% Similarity=0.100 Sum_probs=113.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEE--EEccC-CCCEEEEEECCCcEEEEeCCCCcEEEeccCCC----
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCI--QFNPV-DDRYFISGSLDAKVRIWSIPERQVVDWNDLHE---- 650 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v--~fsp~-dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~---- 650 (927)
++.++.+..++.|..+|..+|+.+..+....+...+ .-+|. .+..++.+..++.+..+|..+++.+-......
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~ 239 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA 239 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCc
Confidence 467888888999999999999998877633221100 01110 12356777888999999999887653222110
Q ss_pred ----cEEEEEECC--CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 651 ----MVTAACYTP--DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 651 ----~V~sla~sp--dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
....+..+| .+..+++++.+|.+..+|+.+++......+ . ....+... +. .|++++.++.
T Consensus 240 ~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--------~---~~~~~~~~--~~-~vy~~~~~g~ 305 (394)
T PRK11138 240 TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--------G---SVNDFAVD--GG-RIYLVDQNDR 305 (394)
T ss_pred cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--------C---CccCcEEE--CC-EEEEEcCCCe
Confidence 011111223 355677788899999999999987654321 1 11112222 23 6778888999
Q ss_pred EEEEECCcceEEEEeecCC-cceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 725 IRVVDGIDLVHKFKGFRNT-NSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 725 I~VwD~~~~~~~~~~~~~~-~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
|..+|..+....+...... ....+..+ .+.+|+.++.+|.|++.|..+++..
T Consensus 306 l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 306 VYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred EEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 9999976554444322111 11112222 2557888899999999999887654
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00075 Score=70.45 Aligned_cols=215 Identities=16% Similarity=0.086 Sum_probs=141.2
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG-~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
.+++.|...+...+|...+++.--..+ .-|...|+-+.=.-|. --+..++.|.++++.++..+.....
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~c----d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~------- 153 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQC----DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA------- 153 (344)
T ss_pred cEEEeccccceeeeecccCcccceeee----cccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce-------
Confidence 467889999999999988776532222 3344433322221122 2466678899999988754421111
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCC--CEEEEEecCC
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD--DVLDLSWSKS 578 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~--~V~~l~~spd 578 (927)
-|.. .+..++++++
T Consensus 154 ----------------------------------------------------------------~h~~~~~~ns~~~snd 169 (344)
T KOG4532|consen 154 ----------------------------------------------------------------VHNQNLTQNSLHYSND 169 (344)
T ss_pred ----------------------------------------------------------------eeccccceeeeEEcCC
Confidence 1222 2677888888
Q ss_pred -cEEEEEeCCCcEEEEeCCCCc--EEEEE--ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE------Eecc
Q 002407 579 -QHLLSSSMDKTVRLWHLSSKT--CLKIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV------DWND 647 (927)
Q Consensus 579 -~~L~Sgs~DgtV~lWDl~t~~--~~~~~--~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v------~~~~ 647 (927)
.++++.+....|.+|.+.... .+.+. ..++.-.+..|+. ....++++..||++.|||++..... ....
T Consensus 170 ~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~ 248 (344)
T KOG4532|consen 170 PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPH 248 (344)
T ss_pred CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCC
Confidence 567777777889888887432 22322 2556667888998 8889999999999999999875432 1234
Q ss_pred CCCcEEEEEECCCCC--EEEEEECCCeEEEEECCCCeeeeecccccccccccCCC-CCeEEEEEcCCCCc
Q 002407 648 LHEMVTAACYTPDGQ--GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQ-RKITGFQFAPGSSS 714 (927)
Q Consensus 648 ~~~~V~sla~spdg~--~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~-~~Vtsl~fspdg~~ 714 (927)
|.+.+..+.|++.|. +|+..-.-+.+.+.|+++..-.+.+.+.. .+...|. ..|..-.|+.++..
T Consensus 249 hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~--d~~~~~~tq~ifgt~f~~~n~s 316 (344)
T KOG4532|consen 249 HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD--DVERKHNTQHIFGTNFNNENES 316 (344)
T ss_pred CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc--cccccccccccccccccCCCcc
Confidence 568999999998664 45555556789999999987666544322 2223343 34888888887763
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00011 Score=87.21 Aligned_cols=178 Identities=13% Similarity=0.164 Sum_probs=137.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-CCCcEEEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEMVTAAC 656 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-~~~~V~sla 656 (927)
..++.|+....+..+|+.+.+..+... ....|+-|.. +++++.+|...|+|.+-|.++.+.+..+. |.+.|..+
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf- 223 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF- 223 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeee-
Confidence 457778888888899999888877776 3335776665 67899999999999999999988887554 44666554
Q ss_pred ECCCCCEEEEEEC---------CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 657 YTPDGQGALVGSY---------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 657 ~spdg~~l~tgs~---------Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
.-.|+.|++++. |.-|++||++..+.+..+++. ....-+.|+|.-...+++++..|+..+
T Consensus 224 -Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~----------~~P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 224 -DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP----------YGPQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred -eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc----------cCchhhhhcccccceEEEEecccceee
Confidence 456888888765 556899999987766554432 122456789987779999999999999
Q ss_pred EE---CCcc-eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEE
Q 002407 728 VD---GIDL-VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 728 wD---~~~~-~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWd 771 (927)
.| ..+. ...+..+.....+..++++++++.|+.+..+|.|.+|.
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 99 3332 44455555566699999999999999999999999998
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0016 Score=70.91 Aligned_cols=202 Identities=11% Similarity=0.117 Sum_probs=135.8
Q ss_pred EEEEecCC--cEEEEEeCCCc-EEEEeCCCCcEEEEEecC---CceEEEEEccCCCCEEEEEEC-----CCcEEEEeCC-
Q 002407 571 LDLSWSKS--QHLLSSSMDKT-VRLWHLSSKTCLKIFSHS---DYVTCIQFNPVDDRYFISGSL-----DAKVRIWSIP- 638 (927)
Q Consensus 571 ~~l~~spd--~~L~Sgs~Dgt-V~lWDl~t~~~~~~~~h~---~~V~~v~fsp~dg~~L~sgs~-----Dg~I~IWDl~- 638 (927)
..++.+|+ ..++.+-.-|+ ..+||..+++....+.-. ..--.-.|++ ++++|++.-. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence 45677784 45666767665 778999999988877511 1223567999 9999998644 4789999998
Q ss_pred CCcEEE-eccCCCcEEEEEECCCCCEEEEEE------------------CCCeEEEEECCCCeeeeecccccccccccCC
Q 002407 639 ERQVVD-WNDLHEMVTAACYTPDGQGALVGS------------------YKGSCHLYNTSENKLQQKSPINLQNKKKRSH 699 (927)
Q Consensus 639 t~~~v~-~~~~~~~V~sla~spdg~~l~tgs------------------~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h 699 (927)
+.+.+. +..+.-....+.+.|||+.|+++. ++-++.+.|..+++++.+..+.. .-|
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-----~~~ 161 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-----DLH 161 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-----ccc
Confidence 444444 333334567788999998888752 23467777888888877754421 246
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCC-------cEEEEECCcceEEEEee-----cCCcceEEEEEecCCCEEEEEE-CCCc
Q 002407 700 QRKITGFQFAPGSSSEVLVTSADS-------RIRVVDGIDLVHKFKGF-----RNTNSQISASLTANGRYVVSAS-EDSY 766 (927)
Q Consensus 700 ~~~Vtsl~fspdg~~~Llsgs~Dg-------~I~VwD~~~~~~~~~~~-----~~~~~v~sv~fspdg~~Lasgs-~Dg~ 766 (927)
...|..+++.++|. .++..-..+ .|-+++.......+... .-...+-++++++++.++++.+ .-+.
T Consensus 162 ~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 162 QLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred ccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 67799999999874 333332222 25555544433333321 2346788999999998886665 5677
Q ss_pred EEEEECCCCCCcc
Q 002407 767 VYVWKYEAESRPS 779 (927)
Q Consensus 767 I~IWdl~s~~~~~ 779 (927)
+.+||..++....
T Consensus 241 ~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 241 VAVWDAATGRLLG 253 (305)
T ss_pred EEEEECCCCCEee
Confidence 9999999876543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.3e-06 Score=96.14 Aligned_cols=201 Identities=16% Similarity=0.187 Sum_probs=142.4
Q ss_pred CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCC--cEE
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDA--KVR 633 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg--~I~ 633 (927)
++..+|+.|+...+|++|+-+ +.|+.|+..|.|+++++.+|....... |...|+-+.=+. ++..+++.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHH
Confidence 566778899999999999987 899999999999999999998887776 999999999887 888777665433 367
Q ss_pred EEeCCC-CcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC
Q 002407 634 IWSIPE-RQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 634 IWDl~t-~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
+|++.. +.....+ ..-.++.|+..-+.-++|+......|||+.++....++-... ......-++..|+|..
T Consensus 1171 LW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~-----~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT-----VTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred HhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc-----hhhhhhccccccCCCc
Confidence 898765 2222222 344577888776677778777889999999988776632111 1222223677899987
Q ss_pred CcEEEEEECCCcEEEEECCcc--eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccc
Q 002407 713 SSEVLVTSADSRIRVVDGIDL--VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRS 781 (927)
Q Consensus 713 ~~~Llsgs~Dg~I~VwD~~~~--~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~ 781 (927)
. +++ .|| .+||.+.. ++.|..+. .-..=.|+|.|.-++.-++ |||+++-..+...
T Consensus 1243 ~-LIl---ndG--vLWDvR~~~aIh~FD~ft---~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1243 T-LIL---NDG--VLWDVRIPEAIHRFDQFT---DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSV 1299 (1516)
T ss_pred c-eEe---eCc--eeeeeccHHHHhhhhhhe---ecccccccCCCceEEeech-----hhhhHHHHHHhcC
Confidence 5 333 333 46886543 33333221 1123369999999998876 9999987655443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.6e-05 Score=58.08 Aligned_cols=37 Identities=35% Similarity=0.724 Sum_probs=34.8
Q ss_pred CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEe
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH 594 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWD 594 (927)
+++.++.+|.+.|++|+|+|+ .+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 567899999999999999999 8999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0027 Score=67.28 Aligned_cols=181 Identities=15% Similarity=0.077 Sum_probs=112.1
Q ss_pred CCcEEEEeCCCCcEEEEEecCCceEEEE--EccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEE
Q 002407 587 DKTVRLWHLSSKTCLKIFSHSDYVTCIQ--FNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGA 664 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~~h~~~V~~v~--fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l 664 (927)
+++|..||..+++.+........+.... ..+ ++.++++++.++.|..||..+++.+-.......+...- ...+..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence 6899999999999998887532222222 222 56678888899999999999999876555443322211 2245567
Q ss_pred EEEECCCeEEEEECCCCeeeeec-ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCC
Q 002407 665 LVGSYKGSCHLYNTSENKLQQKS-PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNT 743 (927)
Q Consensus 665 ~tgs~Dg~I~IwDl~~~~~~~~~-~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~ 743 (927)
++++.++.|+.+|+.+++..... ..... ...........+. +. .++++..++.|..+|..+...........
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~----~~~~~~~~~~~~~--~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSP----PAGVRSSSSPAVD--GD-RLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSC----TCSTB--SEEEEE--TT-EEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred ccccceeeeEecccCCcceeeeecccccc----ccccccccCceEe--cC-EEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 77778899999999999987763 21100 0011111222333 33 78888889999999976555544443222
Q ss_pred cc----------eEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 744 NS----------QISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 744 ~~----------v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
.. +..-.+..++ .++.++.++.+.-+|+.++..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~ 195 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEK 195 (238)
T ss_dssp T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEE
T ss_pred CCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCE
Confidence 11 1122222344 777777778644449988763
|
... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.014 Score=63.62 Aligned_cols=196 Identities=13% Similarity=0.130 Sum_probs=119.3
Q ss_pred EEccCCCCEEEEEecCC-cEEEEEe-----CCCcEEEEeCC-CCcEEEEEe-cCCceEEEEEccCCCCEEEEEEC-----
Q 002407 562 SFQGHLDDVLDLSWSKS-QHLLSSS-----MDKTVRLWHLS-SKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSL----- 628 (927)
Q Consensus 562 ~l~gH~~~V~~l~~spd-~~L~Sgs-----~DgtV~lWDl~-t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~----- 628 (927)
.|.|| -.|++| .+|++.- ..|.|-|||.. +-+.+..|. |.-....|.+.| +++.|+++-.
T Consensus 51 HFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Th 123 (305)
T PF07433_consen 51 HFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETH 123 (305)
T ss_pred EEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccC
Confidence 45667 468888 4455542 34789999999 556666665 555667788999 8877777521
Q ss_pred -------------CCcEEEEeCCCCcEEEecc-----CCCcEEEEEECCCCCEEEEEECCC-------eEEEEECCCCee
Q 002407 629 -------------DAKVRIWSIPERQVVDWND-----LHEMVTAACYTPDGQGALVGSYKG-------SCHLYNTSENKL 683 (927)
Q Consensus 629 -------------Dg~I~IWDl~t~~~v~~~~-----~~~~V~sla~spdg~~l~tgs~Dg-------~I~IwDl~~~~~ 683 (927)
+-.|.+.|..+++++.... ++-.|..+++.++|..++..-..| .|-+++... .
T Consensus 124 pd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~ 201 (305)
T PF07433_consen 124 PDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--A 201 (305)
T ss_pred cccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--c
Confidence 2345667778888776422 345799999999997666554333 244444332 2
Q ss_pred eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEEC
Q 002407 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~ 763 (927)
...+.. ...........|-+|++++++..+.+++=.-+.+.+||..+....-.. .-..+..++..+++ ++++.+.
T Consensus 202 ~~~~~~--p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~--~l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 202 LRLLPA--PEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV--PLPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred ceeccC--ChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc--ccCceeeeeecCCc-eEEeCCC
Confidence 222211 111123556789999999998855555567789999985543322211 22335556666666 6666554
Q ss_pred CCcEEEEECCC
Q 002407 764 DSYVYVWKYEA 774 (927)
Q Consensus 764 Dg~I~IWdl~s 774 (927)
|. ++.+..
T Consensus 277 -G~--~~~~~~ 284 (305)
T PF07433_consen 277 -GQ--LIRLSP 284 (305)
T ss_pred -cc--EEEccC
Confidence 43 444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0026 Score=78.38 Aligned_cols=257 Identities=15% Similarity=0.118 Sum_probs=150.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccc-
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR- 534 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~- 534 (927)
.+.|.++.|..++.-++.+..+|.|.+-|..+..... .......|.++.|+||...++.......+......-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei------vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI------VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee------eeeccCceEEEeecCCCcEEEEEeCCcEEEEEecccc
Confidence 4689999999999999999999999999876654221 134457788999999998888776655554333211
Q ss_pred cccccccccCcccccceEeecCCCceEEEcc---------------------CCCCEEEEEecCCc-EEEEE----eCC-
Q 002407 535 SINRKSLSLDHMVVPETVFALSDKPICSFQG---------------------HLDDVLDLSWSKSQ-HLLSS----SMD- 587 (927)
Q Consensus 535 ~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~g---------------------H~~~V~~l~~spd~-~L~Sg----s~D- 587 (927)
.+..+.+..+.....+.+----++.-..|+| -.+.=+.|.|--|+ ++++. -.+
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 2222222111111100000000111111221 11122458898885 55552 223
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEE---CCCcEEEEeCCC---CcEEEeccCC-CcEEEEEECC
Q 002407 588 KTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGS---LDAKVRIWSIPE---RQVVDWNDLH-EMVTAACYTP 659 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs---~Dg~I~IWDl~t---~~~v~~~~~~-~~V~sla~sp 659 (927)
..|+|||-+ +..-.+-. ....=.+++|-| .|..+++-. .|+.|.+|.-+. +....-.... ..+..++|+.
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC
Confidence 789999987 43322211 334456899999 888888754 355688887443 2222222222 3499999999
Q ss_pred CCCEEEE---EECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 660 DGQGALV---GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 660 dg~~l~t---gs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
++..|++ ......|++|-+.+.....+..+.+. .... +.|+|.....+.+...+|.+.++|
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~-------~~~~--~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS-------QKAL--LMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred CCCceeeeecccccceEEEEEecCeEEEEEEEEecc-------cccc--ccccCCCceeEEEEecCCcEEEEE
Confidence 9999888 44455599999988765554433221 1111 667776555555555566655554
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.008 Score=69.02 Aligned_cols=278 Identities=15% Similarity=0.117 Sum_probs=139.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccc-eeecccccCccccEEEEccCCCCCeecccccCCceeeecccccc
Q 002407 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG-ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (927)
Q Consensus 458 ~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~-~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~ 536 (927)
.|+.|.|+++..-||.|-..|.|.||.+...+.-. ... .... -..+.+ +........+.... .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~----~~~~----~~~~~~----~~~~~~~~~l~di~-~--- 66 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQ----PPDL----DYNFRR----FSLNNSPGKLTDIS-D--- 66 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------------S------GGGSS-SEEE-G-G---
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCC----Cccc----Cccccc----ccccCCCcceEEeh-h---
Confidence 48999999999999999999999999987654322 000 0000 000000 00000000000000 0
Q ss_pred cccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe---------cC
Q 002407 537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS---------HS 607 (927)
Q Consensus 537 ~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~---------h~ 607 (927)
+....+..- -.|..-+....++|++++.+.-++++.|..+|.+.|.|++....+..-. ..
T Consensus 67 -r~~~~~~~g----------f~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~ 135 (395)
T PF08596_consen 67 -RAPPSLKEG----------FLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSS 135 (395)
T ss_dssp -G--TT-SEE----------EEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS--
T ss_pred -hCCcccccc----------cCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccc
Confidence 000000000 1455566667899999999866999999999999999998887776643 23
Q ss_pred CceEEEEEccC----CC---CEEEEEECCCcEEEEeCC--C-Cc----EEEec-cCCCcEEEEE-ECCC-----------
Q 002407 608 DYVTCIQFNPV----DD---RYFISGSLDAKVRIWSIP--E-RQ----VVDWN-DLHEMVTAAC-YTPD----------- 660 (927)
Q Consensus 608 ~~V~~v~fsp~----dg---~~L~sgs~Dg~I~IWDl~--t-~~----~v~~~-~~~~~V~sla-~spd----------- 660 (927)
..|+++.|.-. |+ -.+++|...|.+.+|.+. . +. ..... .+...|..+. |+.+
T Consensus 136 ~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~ 215 (395)
T PF08596_consen 136 SYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISA 215 (395)
T ss_dssp --EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHH
T ss_pred cCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhH
Confidence 46888888621 22 368899999999999874 1 11 11222 3445555444 3221
Q ss_pred ---------CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC----CCCcEEEEEECCCcEEE
Q 002407 661 ---------GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP----GSSSEVLVTSADSRIRV 727 (927)
Q Consensus 661 ---------g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp----dg~~~Llsgs~Dg~I~V 727 (927)
-..+++...+..++++...+.+..++.. ........+.+.+ .+...|++-..+|.|++
T Consensus 216 ~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~---------~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 216 MQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF---------DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp HHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE----------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred hhccccCCCcCcEEEEEcccceEEEeCCCCcccceee---------ccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence 1235555567889999998877655431 1112223334431 23346777789999999
Q ss_pred EECCcceEEEEeecC----CcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 728 VDGIDLVHKFKGFRN----TNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 728 wD~~~~~~~~~~~~~----~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
|.+..+......... ...+...+|+++|..++-.+. ..+.+|.+
T Consensus 287 ~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 287 YSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp EETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred EECCCchHhhcccCCCccccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 997665554443321 122334677888876665543 34444444
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0059 Score=71.06 Aligned_cols=180 Identities=9% Similarity=0.092 Sum_probs=95.1
Q ss_pred EEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCC
Q 002407 571 LDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE 650 (927)
Q Consensus 571 ~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~ 650 (927)
....|.+.+.+++-....+|.|+.--.....+.+.....+..|-. |.+|+..+. +.|.+||+.+++++.......
T Consensus 72 ~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~ 146 (443)
T PF04053_consen 72 LSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKSS-DFICFYDWETGKLIRRIDVSA 146 (443)
T ss_dssp SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EEEEESS-E
T ss_pred eEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEECC-CCEEEEEhhHcceeeEEecCC
Confidence 456788888888888889999963222222233433334444433 666666654 489999999999999887765
Q ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCCC------------eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEE
Q 002407 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSEN------------KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~------------~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Lls 718 (927)
|..+.|+++|.+++..+.+ .+.|++.... ..... ......|.+.+|..+ .++-
T Consensus 147 -vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~----------~E~~~~IkSg~W~~d---~fiY 211 (443)
T PF04053_consen 147 -VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI----------HEISERIKSGCWVED---CFIY 211 (443)
T ss_dssp --EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE----------EEE-S--SEEEEETT---EEEE
T ss_pred -CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE----------EEecceeEEEEEEcC---EEEE
Confidence 8999999999999998755 6777665433 11111 111456777888765 3444
Q ss_pred EECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 719 TSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 719 gs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+... .|+.+=... ...+... ..++.-+.+.+..+.|.....|+.|..+.+..
T Consensus 212 tT~~-~lkYl~~Ge-~~~i~~l--d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 212 TTSN-HLKYLVNGE-TGIIAHL--DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp E-TT-EEEEEETTE-EEEEEE---SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EcCC-eEEEEEcCC-cceEEEc--CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 4444 665543322 2222222 23455556667777888888888888888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0012 Score=72.47 Aligned_cols=84 Identities=12% Similarity=0.179 Sum_probs=74.5
Q ss_pred CceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 558 KPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
++...+.+|...|.+|+|+|. +++..++.+.+|+|.|+++..++..+.....+++++|.-++.++|+.|...|.|.||
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEE
Confidence 445567788999999999997 679999999999999999999999888669999999998778889999999999999
Q ss_pred eCCCCc
Q 002407 636 SIPERQ 641 (927)
Q Consensus 636 Dl~t~~ 641 (927)
|++..+
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 998754
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0018 Score=74.87 Aligned_cols=129 Identities=15% Similarity=0.162 Sum_probs=90.9
Q ss_pred EEEEeCCCCc--EEEEEecCCceEEEEEccCCCCEEEEEE----CCCc----EEEEeCCCCcEE----EeccCCCcEEEE
Q 002407 590 VRLWHLSSKT--CLKIFSHSDYVTCIQFNPVDDRYFISGS----LDAK----VRIWSIPERQVV----DWNDLHEMVTAA 655 (927)
Q Consensus 590 V~lWDl~t~~--~~~~~~h~~~V~~v~fsp~dg~~L~sgs----~Dg~----I~IWDl~t~~~v----~~~~~~~~V~sl 655 (927)
+.++.+..++ .+..+..+....++.|+-..+..+.+.. .+|. -.+|++...++. ..+..+..+.++
T Consensus 186 l~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~c 265 (545)
T PF11768_consen 186 LHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICC 265 (545)
T ss_pred EEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEE
Confidence 4444444432 2233334555677888875566666542 2343 346776555432 355677899999
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 656 CYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 656 a~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
+++|+...|+.|+.||.|.+||...+..... ...-.++.++|+|+|. ++++|+..|.|.+||.
T Consensus 266 a~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----------ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 266 ARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----------KAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDM 328 (545)
T ss_pred ecCcccceEEEEecCCeEEEEEcCCCeeeee-----------eecccceEEEEcCCCc-EEEEEcCCceEEEEEe
Confidence 9999999999999999999999977644332 2335578999999987 8999999999999994
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0016 Score=80.22 Aligned_cols=197 Identities=13% Similarity=0.165 Sum_probs=135.4
Q ss_pred CCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeC----CCC-
Q 002407 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI----PER- 640 (927)
Q Consensus 567 ~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl----~t~- 640 (927)
.+.|.++.|..+ ..++.+...|.|.+-|..+......-.-...|.+++|+| |+..++..+..++|.+-.- -..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhcc
Confidence 368999999887 778999999999999988876655445788999999999 9999988888777765332 100
Q ss_pred ----------cEEE--e------c----------------------cCCCcEEEEEECCCCCEEEEE-----ECCCeEEE
Q 002407 641 ----------QVVD--W------N----------------------DLHEMVTAACYTPDGQGALVG-----SYKGSCHL 675 (927)
Q Consensus 641 ----------~~v~--~------~----------------------~~~~~V~sla~spdg~~l~tg-----s~Dg~I~I 675 (927)
+.+. | + ...+.=+.++|--||+++++. .....|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 0000 0 0 011223458999999999983 22378999
Q ss_pred EECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE---ECCCcEEEEECCcceE---EEEeecCCcceEEE
Q 002407 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT---SADSRIRVVDGIDLVH---KFKGFRNTNSQISA 749 (927)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg---s~Dg~I~VwD~~~~~~---~~~~~~~~~~v~sv 749 (927)
||-+ +.+.... ....+.-.+++|-|.|. ++++. ..|+.|.+|....+.+ .+........+..+
T Consensus 227 ~drE-g~Lns~s---------e~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 227 YDRE-GALNSTS---------EPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred eccc-chhhccc---------CcccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence 9987 5444332 13334456889999876 55554 4567899998433322 12223344458899
Q ss_pred EEecCCCEEEE---EECCCcEEEEECCCC
Q 002407 750 SLTANGRYVVS---ASEDSYVYVWKYEAE 775 (927)
Q Consensus 750 ~fspdg~~Las---gs~Dg~I~IWdl~s~ 775 (927)
+|+.++..||+ ......|++|-+.+-
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eecCCCCceeeeecccccceEEEEEecCe
Confidence 99999999988 455555999998874
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0026 Score=69.97 Aligned_cols=250 Identities=11% Similarity=0.051 Sum_probs=138.9
Q ss_pred eeEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 449 CQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~-~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
.+-|.+|...|..|+|||..+ +|..++.+.+|+|.|+.+.....
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs----------------------------------- 230 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS----------------------------------- 230 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeee-----------------------------------
Confidence 456789999999999999877 78889999999999997653222
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEE-EEE
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCL-KIF 604 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~-~~~ 604 (927)
.+..| ..+++++|.-+ ++|..|-..|.|.|||++..+-. ..+
T Consensus 231 ----------------------------------sy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~ 275 (463)
T KOG1645|consen 231 ----------------------------------SYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMEL 275 (463)
T ss_pred ----------------------------------heecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhh
Confidence 22234 67899999877 77999999999999999865421 111
Q ss_pred e---cCCceEEEEEccC-----CCCEEEEEECCCcEEEEeCCC----CcEEEeccCCCcEEEEEECCCCCEEEEEECCC-
Q 002407 605 S---HSDYVTCIQFNPV-----DDRYFISGSLDAKVRIWSIPE----RQVVDWNDLHEMVTAACYTPDGQGALVGSYKG- 671 (927)
Q Consensus 605 ~---h~~~V~~v~fsp~-----dg~~L~sgs~Dg~I~IWDl~t----~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg- 671 (927)
. ...+|..|+.-+. .+.+|+..+.+ +..|.+.- ..++.....++...++.+.+-.+.+++.....
T Consensus 276 ~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~p 353 (463)
T KOG1645|consen 276 VANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNP 353 (463)
T ss_pred hhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCCC
Confidence 1 2234444332220 34444444433 55665532 22333444556777777777556655543321
Q ss_pred ------eEE-EEECCCCeeeeeccccc-ccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCC
Q 002407 672 ------SCH-LYNTSENKLQQKSPINL-QNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNT 743 (927)
Q Consensus 672 ------~I~-IwDl~~~~~~~~~~i~~-~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~ 743 (927)
.|. --|..++..+....-.. ..+..+-+.. ..+.-.+++..++.++..-..+.+||........... -.
T Consensus 354 n~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~--~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~-~~ 430 (463)
T KOG1645|consen 354 NFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTT--QAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLA-LS 430 (463)
T ss_pred CCccceeeeeeeccccCceeeeecccccCCcccccccc--cceeccccccEEEEecCCcceeEEeccchhheeeecc-cC
Confidence 011 11222332222211000 0000001111 1111233444344445566889999976544433332 23
Q ss_pred cceEEEEEec-C-CCEEEEEECCCcEEEEECCC
Q 002407 744 NSQISASLTA-N-GRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 744 ~~v~sv~fsp-d-g~~Lasgs~Dg~I~IWdl~s 774 (927)
.++..++... + +.||++-. |..++||..+.
T Consensus 431 epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 431 EPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred cceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 5666665433 2 34666665 55688887654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0077 Score=72.01 Aligned_cols=211 Identities=13% Similarity=0.148 Sum_probs=134.3
Q ss_pred eeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCC-EEEEEEcCCCCEEEEEeCCCc-----EEEEecC
Q 002407 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS-IWSIKFSLDGRYLASAGEDCV-----IHVWQVV 486 (927)
Q Consensus 413 ~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~-I~~vafSpdG~~LaSgs~Dgt-----VrVWdv~ 486 (927)
.+++.+.+...++.|..+|+|.+++.+.+. .+.+++|... |..+....+..+|++-++|+. |+||+++
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~------~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQL------IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEeccccee------eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 577778888889999999999999854332 3566788877 554544444579999888765 8999987
Q ss_pred cCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccC
Q 002407 487 ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH 566 (927)
Q Consensus 487 ~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH 566 (927)
..+..... ..+... .++.. .+...
T Consensus 101 k~~~n~sP---------~c~~~~-----------------------------------------ri~~~------~np~~ 124 (933)
T KOG2114|consen 101 KVDKNNSP---------QCLYEH-----------------------------------------RIFTI------KNPTN 124 (933)
T ss_pred ccCCCCCc---------ceeeee-----------------------------------------eeecc------CCCCC
Confidence 54311100 000000 00000 00113
Q ss_pred CCCEEEEEecCC-cEEEEEeCCCcEEEEeCC--CCcE-EEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC
Q 002407 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS--SKTC-LKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 567 ~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~--t~~~-~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~ 640 (927)
..++.+++.+.+ ..++.|-.+|.|..+.-+ ..+- ...+. ...+|+.++|.. ++..++....-..|.+|.+...
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSGR 203 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEecCC
Confidence 456788888888 889999999999988532 1111 12222 567999999987 7776444444567999999865
Q ss_pred c-EEEeccC-CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 641 Q-VVDWNDL-HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 641 ~-~v~~~~~-~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
. ......+ ...+.|.++++....+++++ ...+.+|+.........+
T Consensus 204 ~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 204 TPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred CcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 5 2333343 45788888887655455554 457999998865554443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.023 Score=68.18 Aligned_cols=162 Identities=18% Similarity=0.245 Sum_probs=105.1
Q ss_pred EccCCCC-EEEEEecCC-cEEEEEeCCCc-----EEEEeCCC------CcEE---EEEe-----cCCceEEEEEccCCCC
Q 002407 563 FQGHLDD-VLDLSWSKS-QHLLSSSMDKT-----VRLWHLSS------KTCL---KIFS-----HSDYVTCIQFNPVDDR 621 (927)
Q Consensus 563 l~gH~~~-V~~l~~spd-~~L~Sgs~Dgt-----V~lWDl~t------~~~~---~~~~-----h~~~V~~v~fsp~dg~ 621 (927)
|+.+... |..+....+ ..|++.+.|+. |+||+++. .+++ +.++ ...++.+++.+. +-+
T Consensus 60 fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~ 138 (933)
T KOG2114|consen 60 FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLK 138 (933)
T ss_pred heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-ccc
Confidence 3344444 333333333 57787777654 99999863 3444 3333 245788999998 888
Q ss_pred EEEEEECCCcEEEEe--C-CC--CcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccc
Q 002407 622 YFISGSLDAKVRIWS--I-PE--RQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKK 696 (927)
Q Consensus 622 ~L~sgs~Dg~I~IWD--l-~t--~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~ 696 (927)
.+++|-.+|.|..+. + +. .+........++|+.+++..+++.++.......|.+|.+........ . .
T Consensus 139 ~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~-~-------l 210 (933)
T KOG2114|consen 139 TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLK-V-------L 210 (933)
T ss_pred EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCccee-e-------e
Confidence 999999999999884 2 11 12223445568999999999998844444567899999985441111 1 1
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceE
Q 002407 697 RSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH 735 (927)
Q Consensus 697 ~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~ 735 (927)
..++..+.|..|++... .+++ +.+..|.+|+......
T Consensus 211 d~~G~~lnCss~~~~t~-qfIc-a~~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 211 DNNGISLNCSSFSDGTY-QFIC-AGSEFLYFYDSDGRGP 247 (933)
T ss_pred ccCCccceeeecCCCCc-cEEE-ecCceEEEEcCCCcce
Confidence 36778899999998654 3433 4455688888654333
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.002 Score=76.05 Aligned_cols=68 Identities=10% Similarity=0.226 Sum_probs=57.8
Q ss_pred EEEEEecCCc-EEEEEeCCCcEEEEeCCCCcEEEEE-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCC
Q 002407 570 VLDLSWSKSQ-HLLSSSMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (927)
Q Consensus 570 V~~l~~spd~-~L~Sgs~DgtV~lWDl~t~~~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~ 638 (927)
+++++|+|.. .|+.|-.-|.+.+|...+.+.-... .|+.+|..+.|+| +|..++++..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 4569999984 5777778899999998877654443 3999999999999 99999999999999999875
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.002 Score=76.33 Aligned_cols=183 Identities=15% Similarity=0.101 Sum_probs=126.4
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc
Q 002407 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND 647 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~ 647 (927)
+.+.|++++ +..|+-|+.+|.|++.+....- ...+.|... .. +|.++++|+.||+|.|-.+-+.+......
T Consensus 40 D~is~~av~-~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 40 DAISCCAVH-DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred hHHHHHHhh-cceeeeccccceEEEEecCCcc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccceeEe
Confidence 455666664 4679999999999999977543 444445544 33 89999999999999999999988888888
Q ss_pred CCCcEEEEEECCC-----CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC
Q 002407 648 LHEMVTAACYTPD-----GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (927)
Q Consensus 648 ~~~~V~sla~spd-----g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D 722 (927)
.+.++.+++++|+ .+.+++|+..| +.++.-+-....... ......++|.++.|..+ +++-..|
T Consensus 111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-------~l~~~eG~I~~i~W~g~----lIAWand 178 (846)
T KOG2066|consen 111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-------VLSEGEGPIHSIKWRGN----LIAWAND 178 (846)
T ss_pred cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-------eeecCccceEEEEecCc----EEEEecC
Confidence 8999999999997 57899999999 777753311111111 11356789999999863 5556666
Q ss_pred CcEEEEECCcceEEEEee------cCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 723 SRIRVVDGIDLVHKFKGF------RNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 723 g~I~VwD~~~~~~~~~~~------~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
--|+|||........... ........+.|.++.++++ | ..-+|+|..++
T Consensus 179 ~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-G-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 179 DGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-G-WGDSVKICSIK 233 (846)
T ss_pred CCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-e-cCCeEEEEEEe
Confidence 679999954432222111 1122234578877665444 4 34469999888
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.046 Score=60.49 Aligned_cols=269 Identities=14% Similarity=0.122 Sum_probs=144.8
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEecCcCcccceeeccccc
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG----------EDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs----------~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
.+|.+++..++++..+.. .+.. -.+..+|||+.++++. ..-.|.+||..+-....++......
T Consensus 17 ~rv~viD~d~~k~lGmi~----~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~ 89 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMID----TGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP 89 (342)
T ss_dssp EEEEEEETTTTEEEEEEE----EESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred ceEEEEECCCCcEEEEee----cccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence 478888877776655443 2222 2367899999888753 2447999999998877766422210
Q ss_pred Cc--cccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC
Q 002407 501 GH--LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (927)
Q Consensus 501 ~~--~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd 578 (927)
.. .........+.+++++........- .+ .+.++..+.+..--.-.+ ...+--+..
T Consensus 90 R~~~~~~~~~~~ls~dgk~~~V~N~TPa~-------SV--------------tVVDl~~~kvv~ei~~PG-C~~iyP~~~ 147 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKFLYVQNFTPAT-------SV--------------TVVDLAAKKVVGEIDTPG-CWLIYPSGN 147 (342)
T ss_dssp B--BS--GGGEEE-TTSSEEEEEEESSSE-------EE--------------EEEETTTTEEEEEEEGTS-EEEEEEEET
T ss_pred hheecccccceEEccCCcEEEEEccCCCC-------eE--------------EEEECCCCceeeeecCCC-EEEEEecCC
Confidence 10 0111122444444444332211110 00 233333322221111112 111211223
Q ss_pred cEEEEEeCCCcEEEEeCC-CCcEEEEEe-----cCCc-eEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE---eccC
Q 002407 579 QHLLSSSMDKTVRLWHLS-SKTCLKIFS-----HSDY-VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD---WNDL 648 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~-t~~~~~~~~-----h~~~-V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~---~~~~ 648 (927)
..+.+-|.||.+.-..+. .|+...... -.++ +..-++.. .+..++--+.+|.|+--|+....... +.-.
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCccccc
Confidence 568899999999998887 455543221 1122 22334443 44556667889999998887765321 1110
Q ss_pred ----------CCcEEEEEECCCCCEEEEEECC----------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE
Q 002407 649 ----------HEMVTAACYTPDGQGALVGSYK----------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 649 ----------~~~V~sla~spdg~~l~tgs~D----------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
++...-+++++..+.|.+--.. ..|.+||+.+++.+..+.+. ..+.+|+.
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----------~~~~Si~V 296 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----------HPIDSIAV 296 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----------EEESEEEE
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----------CccceEEE
Confidence 1233457777766555553221 14888999999988876532 34778999
Q ss_pred cCCCCcEEEEEE-CCCcEEEEECCc--ceEEEEe
Q 002407 709 APGSSSEVLVTS-ADSRIRVVDGID--LVHKFKG 739 (927)
Q Consensus 709 spdg~~~Llsgs-~Dg~I~VwD~~~--~~~~~~~ 739 (927)
+.+...+|++.+ .++.|.+||..+ .+.....
T Consensus 297 sqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 297 SQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 988776776654 579999999654 4444443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=3.2e-05 Score=88.74 Aligned_cols=197 Identities=13% Similarity=0.155 Sum_probs=130.6
Q ss_pred CCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCcEE-E--EEecCCceEEEEEccCCCCEEEEEE----CCCcEEEEeC
Q 002407 568 DDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTCL-K--IFSHSDYVTCIQFNPVDDRYFISGS----LDAKVRIWSI 637 (927)
Q Consensus 568 ~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~~~-~--~~~h~~~V~~v~fsp~dg~~L~sgs----~Dg~I~IWDl 637 (927)
..+.|+++.-+ ..++.|..+|.|-+-.++...-- . +-++..+.++++|++.|.+.|++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 34667776554 45788999999999888755432 2 2238889999999998888888773 2566999999
Q ss_pred CCCc--EE---Eecc-CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 638 PERQ--VV---DWND-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 638 ~t~~--~v---~~~~-~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
.++- +. .+.. ......++||..+.+.+++|.....+.++|++....... ...+..+..+...|-
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~----------svnTk~vqG~tVdp~ 206 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS----------SVNTKYVQGITVDPF 206 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh----------hhhhhhcccceecCC
Confidence 8761 11 1222 334667899999999999999999999999984322111 123445667777774
Q ss_pred CCcEEEEEECCCcEEEEE-CCcceEEEEeecC-----CcceEEEEEecCCC-EEEEEE-CCCcEEEEECCCC
Q 002407 712 SSSEVLVTSADSRIRVVD-GIDLVHKFKGFRN-----TNSQISASLTANGR-YVVSAS-EDSYVYVWKYEAE 775 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD-~~~~~~~~~~~~~-----~~~v~sv~fspdg~-~Lasgs-~Dg~I~IWdl~s~ 775 (927)
...+ ++...|+.|.+|| ..+....+....+ ...+..++|.|... .+++.. ..++|+++++..-
T Consensus 207 ~~nY-~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 207 SPNY-FCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred CCCc-eeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 4434 4555599999999 3333332222211 22477889988532 344444 4567999998754
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.025 Score=60.76 Aligned_cols=204 Identities=14% Similarity=0.252 Sum_probs=117.1
Q ss_pred EEccCCCCEEEEEecCC-cE-EEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeC
Q 002407 562 SFQGHLDDVLDLSWSKS-QH-LLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637 (927)
Q Consensus 562 ~l~gH~~~V~~l~~spd-~~-L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl 637 (927)
.+.+-...+..|+|.|+ +. +++....+.|...+. .|+.++.+. --...-.|++.. ++.++++--.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEE
Confidence 45566677999999997 65 555666788888887 478888776 335678888876 6766666556888999988
Q ss_pred CCC--c--E-----EE--ec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC---Ceeee-ecccccccccccCCCC
Q 002407 638 PER--Q--V-----VD--WN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE---NKLQQ-KSPINLQNKKKRSHQR 701 (927)
Q Consensus 638 ~t~--~--~-----v~--~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~---~~~~~-~~~i~~~~~~~~~h~~ 701 (927)
... . . +. .. ..+..+-.++|.|.++.|+++-...-..||.+.. ..... .....+.. ......
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 171 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD--DKLFVR 171 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH---HT--SS
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc--ccceec
Confidence 331 1 1 11 11 1335689999999988888888777777777654 11111 11111110 123455
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ceEEEEeecC-------CcceEEEEEecCCCEEEEEECCCcEEEE
Q 002407 702 KITGFQFAPGSSSEVLVTSADSRIRVVDGID-LVHKFKGFRN-------TNSQISASLTANGRYVVSASEDSYVYVW 770 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~~~~~-------~~~v~sv~fspdg~~Lasgs~Dg~I~IW 770 (927)
.+.+++++|....+++.......|.++|... .+..+..... -...-.++|.++|++.++ ++-+..|+|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 6899999998887888888889999999543 3333333221 123557999999965554 466666665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0022 Score=74.14 Aligned_cols=115 Identities=17% Similarity=0.280 Sum_probs=85.3
Q ss_pred CCEEEEEecCC--cEEEEE----eCCCc----EEEEeCCCCcEE----EEEecCCceEEEEEccCCCCEEEEEECCCcEE
Q 002407 568 DDVLDLSWSKS--QHLLSS----SMDKT----VRLWHLSSKTCL----KIFSHSDYVTCIQFNPVDDRYFISGSLDAKVR 633 (927)
Q Consensus 568 ~~V~~l~~spd--~~L~Sg----s~Dgt----V~lWDl~t~~~~----~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~ 633 (927)
....++.|+.. ..+.|. +.+|. -.+|++...+.. ..+.....|.|++++| +...|+.|+.||.|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEE
Confidence 34466777753 344443 33443 346666655432 2344889999999999 999999999999999
Q ss_pred EEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeee
Q 002407 634 IWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 634 IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
+||...+.. ......-.++.++|+|+|..+++|+..|.+.+||+.-..+.
T Consensus 285 LyD~~~~~t-~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 285 LYDTTRGVT-LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred EEEcCCCee-eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence 999876643 34455667899999999999999999999999998765443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0019 Score=77.26 Aligned_cols=148 Identities=14% Similarity=0.193 Sum_probs=114.2
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEEC---------CCcEEEEeCC
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSL---------DAKVRIWSIP 638 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~---------Dg~I~IWDl~ 638 (927)
.|+-|.. .+..+.+|...|+|.+-|..+.+.++++. |++.|.++.. .|++|++++. |..|+|||++
T Consensus 179 ~v~imR~-Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 179 GVTIMRY-NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred ceEEEEe-cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhh
Confidence 3555544 23678899999999999999999999998 9999998887 5788999876 5568999999
Q ss_pred CCcEEEeccCCCcEEEEEECCC-CCEEEEEECCCeEEEEECC---CCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 639 ERQVVDWNDLHEMVTAACYTPD-GQGALVGSYKGSCHLYNTS---ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 639 t~~~v~~~~~~~~V~sla~spd-g~~l~tgs~Dg~I~IwDl~---~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
..+.+.-+..+....-+.|+|. ...+++.+..|.+.+-|.. +...-.. . .......+..+.+++.+.
T Consensus 255 mmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~-~-------v~p~~s~i~~fDiSsn~~- 325 (1118)
T KOG1275|consen 255 MMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVK-M-------VNPNGSGISAFDISSNGD- 325 (1118)
T ss_pred hhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCcccee-E-------EccCCCcceeEEecCCCc-
Confidence 9887766666655666778884 4568888999999999833 2211111 1 124455699999999887
Q ss_pred EEEEEECCCcEEEEE
Q 002407 715 EVLVTSADSRIRVVD 729 (927)
Q Consensus 715 ~Llsgs~Dg~I~VwD 729 (927)
.++.+..+|.|.+|-
T Consensus 326 alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 326 ALAFGDHEGHVNLWA 340 (1118)
T ss_pred eEEEecccCcEeeec
Confidence 899999999999997
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.045 Score=59.63 Aligned_cols=196 Identities=15% Similarity=0.148 Sum_probs=107.9
Q ss_pred EEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEE---------------EEecCCceEEEE-EccCCCCEEEEEECCCcE
Q 002407 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK---------------IFSHSDYVTCIQ-FNPVDDRYFISGSLDAKV 632 (927)
Q Consensus 570 V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~---------------~~~h~~~V~~v~-fsp~dg~~L~sgs~Dg~I 632 (927)
|..|...++ +.|++-+ |+.|+++++..-.... .+.....+..++ -....+...+......+|
T Consensus 38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 888888887 5555544 5999999987644333 222333444444 112134444444455688
Q ss_pred EEEeCCCC-----cEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccc---ccccCCCCCeE
Q 002407 633 RIWSIPER-----QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQN---KKKRSHQRKIT 704 (927)
Q Consensus 633 ~IWDl~t~-----~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~---~~~~~h~~~Vt 704 (927)
.+|.+... +....+...+.+..++|. +..+++|..+ ...+.|+.++............ ........++.
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 193 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLG 193 (275)
T ss_pred EEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceE
Confidence 88877552 455667777899999998 6678888754 4788899877655443211110 01111223344
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEEC-CcceE--EEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 705 GFQFAPGSSSEVLVTSADSRIRVVDG-IDLVH--KFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I~VwD~-~~~~~--~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
.+.... +. +|+ +..+ .-.+.|. +.... .+.. ......+++ ...||+..+.++ |.||++.+++...
T Consensus 194 ~~~~~~-~e-~Ll-~~~~-~g~fv~~~G~~~r~~~i~W---~~~p~~~~~--~~pyli~~~~~~-iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 194 IFQLSD-NE-FLL-CYDN-IGVFVNKNGEPSRKSTIQW---SSAPQSVAY--SSPYLIAFSSNS-IEVRSLETGELVQ 261 (275)
T ss_pred EEEeCC-ce-EEE-Eecc-eEEEEcCCCCcCcccEEEc---CCchhEEEE--ECCEEEEECCCE-EEEEECcCCcEEE
Confidence 444443 32 333 3333 2233331 21111 1111 123445555 345788776644 9999999986543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0066 Score=70.39 Aligned_cols=197 Identities=16% Similarity=0.207 Sum_probs=121.8
Q ss_pred CCceEEEccCCCCEEEEEecCC-cEEEEE--eCC--CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEE-EEECCC
Q 002407 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSS--SMD--KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SGSLDA 630 (927)
Q Consensus 557 ~k~i~~l~gH~~~V~~l~~spd-~~L~Sg--s~D--gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~-sgs~Dg 630 (927)
+.....+..-...+..-.|+|+ ..++.. ... ..+.++++.+++..........-...+|+| +++.|+ +...||
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg 260 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDG 260 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCC
Confidence 3444455555566777889988 333222 222 459999999998877777666677789999 776665 455566
Q ss_pred c--EEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECC-C--eEEEEECCCCeeeeecccccccccccCCCCCeEE
Q 002407 631 K--VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYK-G--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG 705 (927)
Q Consensus 631 ~--I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~D-g--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts 705 (927)
. |.+.|+.++....+......-+.-.|+|||++++-.+.. | .|.++++........ . .....-..
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri-T---------~~~~~~~~ 330 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL-T---------FSGGGNSN 330 (425)
T ss_pred CccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe-e---------ccCCCCcC
Confidence 5 666788888766655555555578899999998877654 3 477788877665322 1 11111125
Q ss_pred EEEcCCCCcEEEEEECCCc--EEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC
Q 002407 706 FQFAPGSSSEVLVTSADSR--IRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS 765 (927)
Q Consensus 706 l~fspdg~~~Llsgs~Dg~--I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg 765 (927)
-.|+|+|+.+++....+|. |.+.|...... .............+|.++|+.++..+..+
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccCC
Confidence 6799999865555544555 44444322221 22222223333557788888777665433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.016 Score=68.87 Aligned_cols=63 Identities=17% Similarity=0.226 Sum_probs=53.3
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~ 488 (927)
..+++.|-.-+.+.+|.+..++.-.+. ..|+.+|..+.||++|..|.|+..-|.|.+|.+..-
T Consensus 71 ~~vLa~gwe~g~~~v~~~~~~e~htv~-----~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 71 EFVLAQGWEMGVSDVQKTNTTETHTVV-----ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred HHHHhhccccceeEEEecCCceeeeec-----cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 344678888999999998888765443 469999999999999999999999999999998743
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.033 Score=65.61 Aligned_cols=159 Identities=17% Similarity=0.202 Sum_probs=108.6
Q ss_pred eeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCccc
Q 002407 412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERK 491 (927)
Q Consensus 412 ~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~ 491 (927)
...+|.+....++..|...|.|.+|+...+++..+. ..+-.+.+..+..+++..++|.|+..|.|.|+.+.....
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~----~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p- 110 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK----NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP- 110 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhccc----ccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC-
Confidence 346777888889999999999999998877765433 234566777788899988999999999999998765321
Q ss_pred ceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEE
Q 002407 492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL 571 (927)
Q Consensus 492 ~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~ 571 (927)
..+ .++... -+.|...|+
T Consensus 111 ~~~---------------------~~~t~~-----------------------------------------d~~~~~rVT 128 (726)
T KOG3621|consen 111 RDL---------------------DYVTPC-----------------------------------------DKSHKCRVT 128 (726)
T ss_pred Ccc---------------------eeeccc-----------------------------------------cccCCceEE
Confidence 111 000000 012888999
Q ss_pred EEEecCC-cEEEEEeCCCcEEEEeCCCC-----cEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 572 DLSWSKS-QHLLSSSMDKTVRLWHLSSK-----TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 572 ~l~~spd-~~L~Sgs~DgtV~lWDl~t~-----~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
+++|+++ .+|++|...|+|.+-.+.+. ....++.....|..|.+. .+.+|++... ...+++...+.
T Consensus 129 al~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~--r~~Lc~tE~et 200 (726)
T KOG3621|consen 129 ALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLT--RCILCQTEAET 200 (726)
T ss_pred EEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhh--hhheeecchhH
Confidence 9999999 67999999999999888772 112223356777777775 3544554433 23455555444
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.065 Score=63.76 Aligned_cols=180 Identities=12% Similarity=0.175 Sum_probs=102.4
Q ss_pred eCCCcEEEEeCCCCcEEEEEecC-C--------------------ce-EEEEEccCCCCEEEEEECCC------------
Q 002407 585 SMDKTVRLWHLSSKTCLKIFSHS-D--------------------YV-TCIQFNPVDDRYFISGSLDA------------ 630 (927)
Q Consensus 585 s~DgtV~lWDl~t~~~~~~~~h~-~--------------------~V-~~v~fsp~dg~~L~sgs~Dg------------ 630 (927)
..++.|..+|..+++.+..+... . .| ...++.+ .+.+++.++.++
T Consensus 172 ~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~ 250 (488)
T cd00216 172 GVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPG 250 (488)
T ss_pred CCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCC
Confidence 34678888888888887776521 1 01 1234444 456777777665
Q ss_pred ------cEEEEeCCCCcEEEeccCC-CcE------EEEEEC----CCCC---EEEEEECCCeEEEEECCCCeeeeecccc
Q 002407 631 ------KVRIWSIPERQVVDWNDLH-EMV------TAACYT----PDGQ---GALVGSYKGSCHLYNTSENKLQQKSPIN 690 (927)
Q Consensus 631 ------~I~IWDl~t~~~v~~~~~~-~~V------~sla~s----pdg~---~l~tgs~Dg~I~IwDl~~~~~~~~~~i~ 690 (927)
.|.-+|+.+++.+-..... ... ....+. -+|. .+++++.+|.+..+|..+++.+......
T Consensus 251 ~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~ 330 (488)
T cd00216 251 DNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV 330 (488)
T ss_pred CCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee
Confidence 6889999999887543221 100 111111 1343 6788889999999999999987764321
Q ss_pred cccccccCCCCCeEEEEEcCCCCcEEEEE------------------ECCCcEEEEECCcceEEEEeecCC--------c
Q 002407 691 LQNKKKRSHQRKITGFQFAPGSSSEVLVT------------------SADSRIRVVDGIDLVHKFKGFRNT--------N 744 (927)
Q Consensus 691 ~~~~~~~~h~~~Vtsl~fspdg~~~Llsg------------------s~Dg~I~VwD~~~~~~~~~~~~~~--------~ 744 (927)
...++..| + .+.++ ..++.|.-+|..+....++..... .
T Consensus 331 ------------~~~~~~~~-~--~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~ 395 (488)
T cd00216 331 ------------EQPMAYDP-G--LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGF 395 (488)
T ss_pred ------------ccccccCC-c--eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCC
Confidence 01112222 1 12221 234566666654444333332110 1
Q ss_pred ceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccc
Q 002407 745 SQISASLTANGRYVVSASEDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 745 ~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~ 780 (927)
+...-...-.+.+|+.++.||.|+.+|.++++..-+
T Consensus 396 ~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 396 PHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred cccCcceEecCCeEEEECCCCeEEEEECCCCceeeE
Confidence 111111112467888889999999999999876543
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.085 Score=59.97 Aligned_cols=277 Identities=13% Similarity=0.112 Sum_probs=150.2
Q ss_pred cCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC----c-
Q 002407 428 QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG----H- 502 (927)
Q Consensus 428 ~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~----~- 502 (927)
+..+.+.+|+..+++...+.. ....+....|||+|++||-.. ++.|.+++..++........+ ... .
T Consensus 20 s~~~~y~i~d~~~~~~~~l~~------~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~ 91 (353)
T PF00930_consen 20 SFKGDYYIYDIETGEITPLTP------PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVP 91 (353)
T ss_dssp EEEEEEEEEETTTTEEEESS-------EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB-
T ss_pred ccceeEEEEecCCCceEECcC------CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCcc
Confidence 345678889988877665543 267788999999999999886 678999998777433222111 111 0
Q ss_pred --------cccEEEEccCCCCCeecccccCCc-eeee---cccccc----ccccc-----ccCcccccceEeecCCCceE
Q 002407 503 --------LNMLLLANGSPEPTSLSPKHLDNH-LEKK---RRGRSI----NRKSL-----SLDHMVVPETVFALSDKPIC 561 (927)
Q Consensus 503 --------~~~v~~v~~spd~~~la~~~~~~~-i~~~---~~~~~~----~~~~~-----~~~~~~~~~~v~~~s~k~i~ 561 (927)
...-..+-|+||+..|+....+.. +... ...... ....+ ..........++++......
T Consensus 92 dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~ 171 (353)
T PF00930_consen 92 DWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT 171 (353)
T ss_dssp -HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC
T ss_pred ceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE
Confidence 122246679999998887654432 1111 000000 00000 00011112234455444332
Q ss_pred EEc------cCCCCEEEEEecCCcE-EEEE--eCCC---cEEEEeCCCCcEEEEEe--cCCce---EEEEEc-cCCCCEE
Q 002407 562 SFQ------GHLDDVLDLSWSKSQH-LLSS--SMDK---TVRLWHLSSKTCLKIFS--HSDYV---TCIQFN-PVDDRYF 623 (927)
Q Consensus 562 ~l~------gH~~~V~~l~~spd~~-L~Sg--s~Dg---tV~lWDl~t~~~~~~~~--h~~~V---~~v~fs-p~dg~~L 623 (927)
.+. .-..-+..+.|.+++. |+.. ..+. .+.+.|..++.+...+. ....| ..+.|. +.+..+|
T Consensus 172 ~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l 251 (353)
T PF00930_consen 172 ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFL 251 (353)
T ss_dssp EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEE
T ss_pred EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEE
Confidence 222 2344588899998844 5443 3333 37777888776654443 33332 355665 6355666
Q ss_pred EEEECCCc--EEEEeCCCCcEEEeccCCCcEEE-EEECCCCCEEE-EEECC----CeEEEEECC-CCeeeeecccccccc
Q 002407 624 ISGSLDAK--VRIWSIPERQVVDWNDLHEMVTA-ACYTPDGQGAL-VGSYK----GSCHLYNTS-ENKLQQKSPINLQNK 694 (927)
Q Consensus 624 ~sgs~Dg~--I~IWDl~t~~~v~~~~~~~~V~s-la~spdg~~l~-tgs~D----g~I~IwDl~-~~~~~~~~~i~~~~~ 694 (927)
.....+|. |.+++...+....+....-.|.. +.++++++.|. ++..+ ..|+.-++. .+......
T Consensus 252 ~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT------- 324 (353)
T PF00930_consen 252 WISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLT------- 324 (353)
T ss_dssp EEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESS-------
T ss_pred EEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEecc-------
Confidence 66667776 55567777776666666667754 67888877655 44432 245555666 44443321
Q ss_pred cccCCCCCeEEEEEcCCCCcEEEEEECC
Q 002407 695 KKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (927)
Q Consensus 695 ~~~~h~~~Vtsl~fspdg~~~Llsgs~D 722 (927)
.....-..+.|+|+++.++...+.-
T Consensus 325 ---~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 325 ---CEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp ---TTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred ---CCCCCceEEEECCCCCEEEEEEcCC
Confidence 1111116899999998666666543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.043 Score=65.23 Aligned_cols=174 Identities=12% Similarity=0.104 Sum_probs=114.0
Q ss_pred eCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC----cEEEEeCCCCcEEEeccCCCcEEEEEECCC
Q 002407 585 SMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA----KVRIWSIPERQVVDWNDLHEMVTAACYTPD 660 (927)
Q Consensus 585 s~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg----~I~IWDl~t~~~v~~~~~~~~V~sla~spd 660 (927)
-..+.+.+.|..+.+....+.-......++++| +++++++.+.+. ++..-+..+...+..+.... ...+.++
T Consensus 212 ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~---iea~vkd 287 (635)
T PRK02888 212 KYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR---IEEAVKA 287 (635)
T ss_pred ceeEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEchHH---HHHhhhC
Confidence 344667888888887777776566667889999 888888776321 23333322222111111111 0133567
Q ss_pred CCEEEEEECCCeEEEEECCC-----CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceE
Q 002407 661 GQGALVGSYKGSCHLYNTSE-----NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH 735 (927)
Q Consensus 661 g~~l~tgs~Dg~I~IwDl~~-----~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~ 735 (927)
|++..++ ++.|.+.|..+ ......+ .-......+.++|||+.+++++..+.+|.|+|..+...
T Consensus 288 GK~~~V~--gn~V~VID~~t~~~~~~~v~~yI----------PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 288 GKFKTIG--GSKVPVVDGRKAANAGSALTRYV----------PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred CCEEEEC--CCEEEEEECCccccCCcceEEEE----------ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 8877763 67899999987 3333332 34566788999999997777778899999999765442
Q ss_pred EE-----------EeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 736 KF-----------KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 736 ~~-----------~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
.+ ....-.......+|+++|+...+.--|..|..|++..
T Consensus 356 ~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 11 1111122234578999999888889999999999986
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.24 Score=55.43 Aligned_cols=173 Identities=17% Similarity=0.281 Sum_probs=113.9
Q ss_pred CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCC------CCEEEEEEC----------CCcEEEEeCCCC-----c--E
Q 002407 588 KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVD------DRYFISGSL----------DAKVRIWSIPER-----Q--V 642 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~d------g~~L~sgs~----------Dg~I~IWDl~t~-----~--~ 642 (927)
..|+|.|..+.+.+..+. ....+++++..... ..+|+.|.. .|.|.++++... + .
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 368999999888887765 44455555433211 467777754 288999999884 3 2
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCe-eeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 643 VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENK-LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 643 v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~-~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
+.....++.|++++-- .+ +|+++. .+.|.+|++...+ +...... .....++++....+ ++++|..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~--------~~~~~i~sl~~~~~---~I~vgD~ 147 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFY--------DSPFYITSLSVFKN---YILVGDA 147 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE---------BSSSEEEEEEETT---EEEEEES
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhhee--------cceEEEEEEecccc---EEEEEEc
Confidence 3345567889998876 33 455544 5899999998887 5444322 23346777776643 8899988
Q ss_pred CCcEEEE--ECC-cceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 722 DSRIRVV--DGI-DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 722 Dg~I~Vw--D~~-~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
-..|.++ +.. .....+........++++.|-++++.++.+..+|+|.++.+..
T Consensus 148 ~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 148 MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 8888876 532 2233333333466688888886768999999999999999964
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.11 Score=60.36 Aligned_cols=176 Identities=11% Similarity=0.202 Sum_probs=93.1
Q ss_pred cEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE------EEeccCC-CcEEEEEECCC
Q 002407 589 TVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV------VDWNDLH-EMVTAACYTPD 660 (927)
Q Consensus 589 tV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~------v~~~~~~-~~V~sla~spd 660 (927)
.|+||+.. |+.+..+. ..+.|.++.|+. + ..|++...||.+++||+..... +...... ..+....+..+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCC
Confidence 58999876 44555555 348999999986 4 4566777999999999864430 1101110 11222233334
Q ss_pred CCEEEEEECCCeEEEEECCCCeee-eecccccccccccCC-CCCeEE-EEEcCCCCcEEEEEECCCcEEEEECCcceEEE
Q 002407 661 GQGALVGSYKGSCHLYNTSENKLQ-QKSPINLQNKKKRSH-QRKITG-FQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF 737 (927)
Q Consensus 661 g~~l~tgs~Dg~I~IwDl~~~~~~-~~~~i~~~~~~~~~h-~~~Vts-l~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~ 737 (927)
| +++-..++.+.+..-...... .... ..+......+ ...... ..+..+.. ..+....++.|.+.+......
T Consensus 139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~-~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 139 G--IVVLTGNNRFYVVNNIDEPVKLRRLP-EIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFKQ-- 212 (410)
T ss_pred C--EEEECCCCeEEEEeCccccchhhccc-cCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEcccccc--
Confidence 5 444444555544432221111 1100 0000000000 011111 23444433 344445556666554322211
Q ss_pred EeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 738 KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 738 ~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
....+++..+++||+|++||.-..+|.+.|...+-.
T Consensus 213 --i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 213 --IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred --ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 122467999999999999999999999998876543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00026 Score=81.57 Aligned_cols=192 Identities=17% Similarity=0.258 Sum_probs=121.8
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcC-CCCEEEEEe----CCCcEEEEecCcCcccceee
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAG----EDCVIHVWQVVESERKGELL 495 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp-dG~~LaSgs----~DgtVrVWdv~~~~~~~~l~ 495 (927)
+.++..|...|+|-+-....+..+. .....+|....++++|++ |.+.||.|- .|-.+.|||+.+.-....
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs---~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPk-- 144 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSS---AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPK-- 144 (783)
T ss_pred hhhhhhccccCceEEeecCCccccc---ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCc--
Confidence 3456777788888777665554441 123478899999999998 667888773 366799999876521000
Q ss_pred cccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEe
Q 002407 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW 575 (927)
Q Consensus 496 ~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~ 575 (927)
...... . +.......++|
T Consensus 145 -------------------e~~~fs------------------------------------~-------~~l~gqns~cw 162 (783)
T KOG1008|consen 145 -------------------ESPLFS------------------------------------S-------STLDGQNSVCW 162 (783)
T ss_pred -------------------cccccc------------------------------------c-------ccccCcccccc
Confidence 000000 0 01122336778
Q ss_pred cCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeC-CCC-cEEEec-----c
Q 002407 576 SKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI-PER-QVVDWN-----D 647 (927)
Q Consensus 576 spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl-~t~-~~v~~~-----~ 647 (927)
-.+ ..+++|.....|.++|++........-.+..+..+...|...+|+++-. ||.|.+||. ..- .++... .
T Consensus 163 lrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~ 241 (783)
T KOG1008|consen 163 LRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENK 241 (783)
T ss_pred ccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCC
Confidence 777 6677888888999999984332222224556778888887788887765 999999993 321 222221 2
Q ss_pred CCCcEEEEEECCC--CCEEEEEECCCeEEEEECCC
Q 002407 648 LHEMVTAACYTPD--GQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 648 ~~~~V~sla~spd--g~~l~tgs~Dg~I~IwDl~~ 680 (927)
....+..++|.|- |...+..-..++|++||+..
T Consensus 242 ~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 242 KPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 2346999999994 33333444567899999864
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.051 Score=62.49 Aligned_cols=203 Identities=16% Similarity=0.209 Sum_probs=119.2
Q ss_pred CEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEE-------------------------------------------EEE
Q 002407 569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL-------------------------------------------KIF 604 (927)
Q Consensus 569 ~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~-------------------------------------------~~~ 604 (927)
.|+.+.|.++ ..|+.+...|.|.||.....+.. ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4788999887 88999999999998854321110 011
Q ss_pred e-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC---------CCcEEEEEECC-----CC---CEEEE
Q 002407 605 S-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL---------HEMVTAACYTP-----DG---QGALV 666 (927)
Q Consensus 605 ~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~---------~~~V~sla~sp-----dg---~~l~t 666 (927)
. ..++|++++.+ +--+++.|..+|.+.|.|++...++..... ...++++.|.. |+ -.+++
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 1 45789999997 566999999999999999998887753221 23677887762 33 47899
Q ss_pred EECCCeEEEEECCC---CeeeeecccccccccccCCCCCeEEEE-EcCCC-------------------CcEEEEEECCC
Q 002407 667 GSYKGSCHLYNTSE---NKLQQKSPINLQNKKKRSHQRKITGFQ-FAPGS-------------------SSEVLVTSADS 723 (927)
Q Consensus 667 gs~Dg~I~IwDl~~---~~~~~~~~i~~~~~~~~~h~~~Vtsl~-fspdg-------------------~~~Llsgs~Dg 723 (927)
|+..|.+.+|.+-- +.....+ .... ..+..+|..+. |..+. -.-+++...+.
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~----~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~ 235 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQF----AGAT-TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES 235 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEE----EEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred EeCCCCEEEEEEecCCCCceEEEE----eecc-ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence 99999999998741 1111111 1100 23445555554 32211 01356666788
Q ss_pred cEEEEECCcceEEEEeecCCcceEEEEEe-----cCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 724 RIRVVDGIDLVHKFKGFRNTNSQISASLT-----ANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 724 ~I~VwD~~~~~~~~~~~~~~~~v~sv~fs-----pdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
.|+|+...+.....+..........+++- ..+..|++-..+|.|++|.+-.-++.
T Consensus 236 ~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 236 DIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp EEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred ceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 89999976655555555332333344552 35678888999999999999875544
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.1 Score=59.31 Aligned_cols=81 Identities=10% Similarity=0.180 Sum_probs=58.4
Q ss_pred CCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC-----------------
Q 002407 587 DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH----------------- 649 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~----------------- 649 (927)
.+.+.|+|+.+++..........+....|+| +++.|+... ++.|.++++.++...++....
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcCCccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 4679999999987766555567899999999 899888875 578999999887665432211
Q ss_pred -CcEEEEEECCCCCEEEEEEC
Q 002407 650 -EMVTAACYTPDGQGALVGSY 669 (927)
Q Consensus 650 -~~V~sla~spdg~~l~tgs~ 669 (927)
..-..+-|+||+++|+....
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEE
T ss_pred cccccceEECCCCCEEEEEEE
Confidence 12356889999999887543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.071 Score=59.70 Aligned_cols=149 Identities=20% Similarity=0.271 Sum_probs=90.7
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCc-EEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCC--CC
Q 002407 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKT-CLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP--ER 640 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~-~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~--t~ 640 (927)
..++|++|+-. +++|+.+. .+.|.+|++...+ ....-. ....++++... +++|+.|.....|.++... ..
T Consensus 87 ~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 87 VKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp ESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE
T ss_pred ecCcceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCC
Confidence 46789988876 44544444 4889999999888 555444 33466666654 5699999988888877543 33
Q ss_pred cEEE--eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCC---------eeeeecccccccccccCCCCCeEEE---
Q 002407 641 QVVD--WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN---------KLQQKSPINLQNKKKRSHQRKITGF--- 706 (927)
Q Consensus 641 ~~v~--~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~---------~~~~~~~i~~~~~~~~~h~~~Vtsl--- 706 (927)
++.. .-.....++++.|-+++..++++..+|.+.++..... ++..... ......|+++
T Consensus 162 ~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~--------f~lg~~v~~~~~~ 233 (321)
T PF03178_consen 162 KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISS--------FHLGDIVNSFRRG 233 (321)
T ss_dssp -EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEE--------EE-SS-EEEEEE-
T ss_pred EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEE--------EECCCccceEEEE
Confidence 3332 2223457899999877789999999999999987632 1111111 1334556766
Q ss_pred EEcC--CCC-----cEEEEEECCCcEEE
Q 002407 707 QFAP--GSS-----SEVLVTSADSRIRV 727 (927)
Q Consensus 707 ~fsp--dg~-----~~Llsgs~Dg~I~V 727 (927)
.+.| .+. ..++.++.+|.|.+
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEE
Confidence 4444 122 14777778887774
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.39 Score=51.65 Aligned_cols=157 Identities=9% Similarity=0.162 Sum_probs=83.4
Q ss_pred CCEEEEEecCCcEEEEEe-CCCcEEEEeCCCC--c--E--EEEEe------cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 568 DDVLDLSWSKSQHLLSSS-MDKTVRLWHLSSK--T--C--LKIFS------HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs-~DgtV~lWDl~t~--~--~--~~~~~------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
+..-.|++..++.++... .++.+.++++... . . ...+. +...+-.++|.| ..+.|+.+-...-..|
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l 143 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRL 143 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhh
Confidence 456778887776666655 4888998888422 1 1 12222 445689999999 5555666666666667
Q ss_pred EeCCC---CcEE---Ee---c---cCCCcEEEEEECCC-CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCC
Q 002407 635 WSIPE---RQVV---DW---N---DLHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQR 701 (927)
Q Consensus 635 WDl~t---~~~v---~~---~---~~~~~V~sla~spd-g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~ 701 (927)
|.+.. ...+ .. . ..-..+.+++++|. +.+++.......|..+| .+++.+..+.+..........-.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~ 222 (248)
T PF06977_consen 144 YEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIP 222 (248)
T ss_dssp EEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---
T ss_pred EEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccC
Confidence 66543 1111 11 1 12246889999995 45666666778899999 56666665544321111112234
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 702 KITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
..-+|+|.++|. |.+.+.-+..++|
T Consensus 223 QpEGIa~d~~G~--LYIvsEpNlfy~f 247 (248)
T PF06977_consen 223 QPEGIAFDPDGN--LYIVSEPNLFYRF 247 (248)
T ss_dssp SEEEEEE-TT----EEEEETTTEEEEE
T ss_pred CccEEEECCCCC--EEEEcCCceEEEe
Confidence 578999999884 6666676666654
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0018 Score=45.75 Aligned_cols=36 Identities=42% Similarity=0.830 Sum_probs=32.6
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWd 484 (927)
...+.+|...|+++.|.+++.++++++.|+.|++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355678999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.18 Score=58.00 Aligned_cols=201 Identities=12% Similarity=0.140 Sum_probs=138.4
Q ss_pred EEEEecCC-c-EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEEC---CCcEEEEeCCCCcEEEe
Q 002407 571 LDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL---DAKVRIWSIPERQVVDW 645 (927)
Q Consensus 571 ~~l~~spd-~-~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~---Dg~I~IWDl~t~~~v~~ 645 (927)
..++.++. . .+++...++.|.+.|..+........-......++++| +++.+..+.. ++.+.+.|-.+.++...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 34556665 3 35555567899999998888888877555888999999 7766665554 68899999998888776
Q ss_pred ccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC--
Q 002407 646 NDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-- 722 (927)
Q Consensus 646 ~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-- 722 (927)
.........+++.|+|+.+++.. .++.|.++|........ ..... ..........+.+.|++....++...+
T Consensus 156 ~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~----~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 156 IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGS----LVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccc----ccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 44444448999999999776665 78899999987766553 11000 012334456788999998555555444
Q ss_pred CcEEEEECCcceEEEEeecCCc-ceEEEEEecCCCEEEEEECC-CcEEEEECCCCCC
Q 002407 723 SRIRVVDGIDLVHKFKGFRNTN-SQISASLTANGRYVVSASED-SYVYVWKYEAESR 777 (927)
Q Consensus 723 g~I~VwD~~~~~~~~~~~~~~~-~v~sv~fspdg~~Lasgs~D-g~I~IWdl~s~~~ 777 (927)
+.+.+.|............... ....+.++|+|+++.+.... +.+.+-|..+...
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 6888888655433332111111 45568899999999888544 7788888877543
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.011 Score=72.42 Aligned_cols=146 Identities=16% Similarity=0.221 Sum_probs=99.5
Q ss_pred CCCEEEEE-ECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCC-------CEEEEEECCCeEEEEECCCCe--eeeecc
Q 002407 619 DDRYFISG-SLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDG-------QGALVGSYKGSCHLYNTSENK--LQQKSP 688 (927)
Q Consensus 619 dg~~L~sg-s~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg-------~~l~tgs~Dg~I~IwDl~~~~--~~~~~~ 688 (927)
+.++|+.- .....|+-.|+..|+++.....+..+.-..|.|+. ...++|-.+..+..||++-.. ++.. +
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~-~ 570 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS-Q 570 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec-c
Confidence 34444443 34577999999999999865555544455565643 345778889999999998643 2211 1
Q ss_pred cccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
. +.-......+|++-..+| .|++|+.+|.||+||......+-.......+|+.+..+.||++|++.+ +..|.
T Consensus 571 ----~-k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLl 642 (794)
T PF08553_consen 571 ----S-KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLL 642 (794)
T ss_pred ----c-cccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEE
Confidence 0 011345567888888877 799999999999999432222222233467899999999999998776 56688
Q ss_pred EEECC
Q 002407 769 VWKYE 773 (927)
Q Consensus 769 IWdl~ 773 (927)
|++..
T Consensus 643 Li~t~ 647 (794)
T PF08553_consen 643 LIDTL 647 (794)
T ss_pred EEEEe
Confidence 88763
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.47 Score=53.62 Aligned_cols=173 Identities=20% Similarity=0.255 Sum_probs=86.6
Q ss_pred CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEEC---CCc-EEEEeCC--CCcEEEeccC--CCcEEEEEECC
Q 002407 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL---DAK-VRIWSIP--ERQVVDWNDL--HEMVTAACYTP 659 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~---Dg~-I~IWDl~--t~~~v~~~~~--~~~V~sla~sp 659 (927)
..|.--|+.+++...++.-+..+..+.|+|.+..+|+-|-. +.. -|||-++ .........+ ...+..=-|.|
T Consensus 168 ~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~ 247 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP 247 (386)
T ss_dssp EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T
T ss_pred ceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC
Confidence 34667788999988888888899999999977777777654 221 3667554 3333332222 24566667999
Q ss_pred CCCEEEEEEC-----CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE-ECCC----------
Q 002407 660 DGQGALVGSY-----KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT-SADS---------- 723 (927)
Q Consensus 660 dg~~l~tgs~-----Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg-s~Dg---------- 723 (927)
||..|.--+. +..|.-+|+.+++.....+. .....+..++++. |++| +.|.
T Consensus 248 DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----------p~~~H~~ss~Dg~--L~vGDG~d~p~~v~~~~~~ 314 (386)
T PF14583_consen 248 DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-----------PWCSHFMSSPDGK--LFVGDGGDAPVDVADAGGY 314 (386)
T ss_dssp TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE------------SEEEEEE-TTSS--EEEEEE-------------
T ss_pred CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-----------CceeeeEEcCCCC--EEEecCCCCCccccccccc
Confidence 9987665322 33577778887654432211 1234555667775 4444 3332
Q ss_pred ------cEEEEECCcceE-EEEeec-------C--CcceEEEEEecCCCEEEEEE-CCCcEEEEECC
Q 002407 724 ------RIRVVDGIDLVH-KFKGFR-------N--TNSQISASLTANGRYVVSAS-EDSYVYVWKYE 773 (927)
Q Consensus 724 ------~I~VwD~~~~~~-~~~~~~-------~--~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~ 773 (927)
-|++++...... .+..|. + ...=....|+|||++|+-.| ..|...||-++
T Consensus 315 ~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 315 KIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp ------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred eecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 355566433221 122221 0 11124579999999877554 57776666543
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.066 Score=63.71 Aligned_cols=94 Identities=14% Similarity=0.143 Sum_probs=75.4
Q ss_pred CCCcEEEEeCCC-----CcEEEEEecCCceEEEEEccCCCCEEEEEE-CCCcEEEEeCCCCc------------EEEecc
Q 002407 586 MDKTVRLWHLSS-----KTCLKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPERQ------------VVDWND 647 (927)
Q Consensus 586 ~DgtV~lWDl~t-----~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~t~~------------~v~~~~ 647 (927)
.++.|.+.|..+ .+.+..+.-......|.++| |++++++++ .+.+|.|.|+.+.+ ++....
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 367899999998 46777777888899999999 888876654 58899999998754 233344
Q ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Q 002407 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~ 680 (927)
........+|.++|..+.+-.-|..|..|++..
T Consensus 373 vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 445667889999999888888999999999876
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.041 Score=50.99 Aligned_cols=103 Identities=18% Similarity=0.292 Sum_probs=73.2
Q ss_pred eEEEEEccCCC---CEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 610 VTCIQFNPVDD---RYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 610 V~~v~fsp~dg---~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
|++|++...++ +.|++|+.|..|++|+ ..+++......+.|+.++-... ..|+.+..+|+|-+|+-.......
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRi- 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRI- 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeeee-
Confidence 56677665333 6899999999999997 4466677777788999988776 569999999999999864322211
Q ss_pred cccccccccccCCCCCeEEEEEcC---CCCcEEEEEECCCcEEE
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAP---GSSSEVLVTSADSRIRV 727 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fsp---dg~~~Llsgs~Dg~I~V 727 (927)
.....++++++.. +|...|++|-.+|.|-+
T Consensus 78 -----------KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 78 -----------KSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred -----------ccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2233366666443 44557899988888753
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.63 Score=49.16 Aligned_cols=138 Identities=13% Similarity=0.060 Sum_probs=92.1
Q ss_pred CCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccC
Q 002407 619 DDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRS 698 (927)
Q Consensus 619 dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~ 698 (927)
...+++.|+..+.+.--|..++.++-.......+.+-+.- -|.+++.|+..|.+++.+..++.....++..
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-------- 92 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-------- 92 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh--------
Confidence 3457788888898999999999887655555555544433 4778999999999999999999776665431
Q ss_pred CCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 699 HQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 699 h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
..-.+ ..+..+++. ++..++.|+..+..|.......++..-....-.+-++.+-...|..+...|.|
T Consensus 93 ~~vk~-~a~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 93 ETVKV-RAQCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred hhhcc-ceEEcCCCc-eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 11111 233556655 89999999999999988777777654333333344555522233333334443
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.047 Score=64.42 Aligned_cols=121 Identities=8% Similarity=0.166 Sum_probs=89.9
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc--CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCee
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND--LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~--~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~ 683 (927)
+...|.--++.. .+++++.|+.-|.|++|+-..++...... .+..+..++++++..++|+|+..|.|.++.+.....
T Consensus 32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 344444444444 78999999999999999988876654433 456777888999999999999999999998877433
Q ss_pred eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 002407 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~ 731 (927)
.....+.. -.+.|...|++++|++++. .+.+|...|+|..-.+.
T Consensus 111 ~~~~~~t~---~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 111 RDLDYVTP---CDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELD 154 (726)
T ss_pred Ccceeecc---ccccCCceEEEEEeccccc-EEeecCCCceEEEEEec
Confidence 22221111 1135788999999999987 79999999999886543
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.78 E-value=2.4 Score=52.46 Aligned_cols=182 Identities=13% Similarity=0.131 Sum_probs=109.3
Q ss_pred EEEEeCCCcEEEEeCCCCcE--EEEEecCCceEEEEEccCCCCEEEEEECC--------------CcEEEEeCCCCcEEE
Q 002407 581 LLSSSMDKTVRLWHLSSKTC--LKIFSHSDYVTCIQFNPVDDRYFISGSLD--------------AKVRIWSIPERQVVD 644 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~--~~~~~h~~~V~~v~fsp~dg~~L~sgs~D--------------g~I~IWDl~t~~~v~ 644 (927)
|+++ ..+.+++..+..-+. ++++........+++.+ ....+.+.+.- ..++++|-.+-+.+.
T Consensus 687 l~~~-~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~ 764 (1096)
T KOG1897|consen 687 LASA-NGGALTIGTIDEIQKLHIRTVPLGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLS 764 (1096)
T ss_pred EEEe-cCCceEEEEecchhhcceeeecCCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEe
Confidence 4443 445677776654332 33444555566677765 34444443321 137778877777665
Q ss_pred eccCC--C---cEEEEEECCC-CCEEEEEEC----------CCeEEEEECCC-CeeeeecccccccccccCCCCCeEEEE
Q 002407 645 WNDLH--E---MVTAACYTPD-GQGALVGSY----------KGSCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 645 ~~~~~--~---~V~sla~spd-g~~l~tgs~----------Dg~I~IwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
..... + .+.++.|..| +.++++|+. .|.|.+|.+.. +++..... ..-.+.+.++.
T Consensus 765 ~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e--------~~v~Gav~aL~ 836 (1096)
T KOG1897|consen 765 SHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAE--------TVVKGAVYALV 836 (1096)
T ss_pred eccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeee--------eeeccceeehh
Confidence 44333 2 3455558877 788888864 47888888776 33322211 23345566655
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 708 FAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 708 fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
... | .+.++-...|++|+..+............++..+.+.-.|..++.|.--+.|.+-.++..+
T Consensus 837 ~fn-g---kllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 837 EFN-G---KLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred hhC-C---eEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 443 2 3445667789999855443333333445677888888899999999988888877776654
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.66 E-value=1.4 Score=51.03 Aligned_cols=180 Identities=12% Similarity=0.081 Sum_probs=90.1
Q ss_pred cEEEEeCCCCcE--EEEEe--cCCc-eEEEEEccCCCCEEEEEECC----CcEEEEeCCCC-----cEEEeccCCCcEEE
Q 002407 589 TVRLWHLSSKTC--LKIFS--HSDY-VTCIQFNPVDDRYFISGSLD----AKVRIWSIPER-----QVVDWNDLHEMVTA 654 (927)
Q Consensus 589 tV~lWDl~t~~~--~~~~~--h~~~-V~~v~fsp~dg~~L~sgs~D----g~I~IWDl~t~-----~~v~~~~~~~~V~s 654 (927)
.|++|.+.+... ..+|. .... ...+..++ ++++|+..... ..+.+.++..+ ....+......+..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 488888887643 34554 2233 66788898 88887754432 34788888774 44444443333433
Q ss_pred EEECCCCCEEEEEEC---CCeEEEEECCCCeeeeecccccccccccCCCC--CeEEEEEcCCCCcEEEEEECCC--cEEE
Q 002407 655 ACYTPDGQGALVGSY---KGSCHLYNTSENKLQQKSPINLQNKKKRSHQR--KITGFQFAPGSSSEVLVTSADS--RIRV 727 (927)
Q Consensus 655 la~spdg~~l~tgs~---Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~--~Vtsl~fspdg~~~Llsgs~Dg--~I~V 727 (927)
..-+..+.+++.... .+.|...++..........+ ...+.. .+..+... +..+++....++ .|++
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~------l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v 353 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTV------LIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRV 353 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEE------EE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEE
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeE------EcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEE
Confidence 332334444443322 35677777776653111100 013333 45555554 343555555554 4788
Q ss_pred EECC-cceEEEEeecCCcceEEEEEecCCCEEE-EEE---CCCcEEEEECCCCCC
Q 002407 728 VDGI-DLVHKFKGFRNTNSQISASLTANGRYVV-SAS---EDSYVYVWKYEAESR 777 (927)
Q Consensus 728 wD~~-~~~~~~~~~~~~~~v~sv~fspdg~~La-sgs---~Dg~I~IWdl~s~~~ 777 (927)
++.. ............+.+..+...+++..+. +.+ .-++|+.||+.+++.
T Consensus 354 ~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 354 YDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 8877 3333322222334455555555554432 222 245688888887653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.61 E-value=1.2 Score=51.79 Aligned_cols=82 Identities=9% Similarity=-0.015 Sum_probs=51.1
Q ss_pred CCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccC
Q 002407 619 DDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRS 698 (927)
Q Consensus 619 dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~ 698 (927)
+....+....++.+.+.+-...+. ....+.+..+++||+|++++.-..+|.+.+....-.+....+.. .
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~--------~ 257 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT--------D 257 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec--------C
Confidence 444555555555666444222111 33356899999999999999999999999987665555444332 2
Q ss_pred CCCCeEEEEEcCC
Q 002407 699 HQRKITGFQFAPG 711 (927)
Q Consensus 699 h~~~Vtsl~fspd 711 (927)
.......|+|.-+
T Consensus 258 ~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 258 SKSPPKQMAWCGN 270 (410)
T ss_pred cCCCCcEEEEECC
Confidence 2334456666654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.49 Score=50.84 Aligned_cols=192 Identities=9% Similarity=0.063 Sum_probs=119.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCC--cEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDC--VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~Dg--tVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
..-...+.|..+|.++-+.|.-| .|+.+|+.+++......... .+++
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-----------------~~Fg-------------- 92 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-----------------RYFG-------------- 92 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-----------------T--E--------------
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-----------------cccc--------------
Confidence 34456788888898888888777 79999998886544321000 0000
Q ss_pred ccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEE
Q 002407 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCI 613 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v 613 (927)
+ -+.-+.+.+..|.| .++...+||..+.+.+..+.....=+.+
T Consensus 93 ------------------------E---Git~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EGWGL 135 (264)
T PF05096_consen 93 ------------------------E---GITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEGWGL 135 (264)
T ss_dssp ------------------------E---EEEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS--EE
T ss_pred ------------------------e---eEEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcceEE
Confidence 0 01113445566666 4678899999999999999977788888
Q ss_pred EEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC------CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 614 QFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 614 ~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~------~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
+. ++..|+.......|+++|..+.+.+...... ..++.+.|- +|...|=.-....|...|..+|+....+
T Consensus 136 t~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 136 TS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp EE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEE
T ss_pred Ec---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEE
Confidence 84 6677777777778999998887655433221 356667775 6666666666778999999999988766
Q ss_pred cccccccc------ccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 688 PINLQNKK------KRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 688 ~i~~~~~~------~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
.+..-... ......-.++|++.|....++++|
T Consensus 212 Dls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 212 DLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp E-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 43221111 112245689999999888666555
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.99 Score=53.75 Aligned_cols=157 Identities=11% Similarity=0.107 Sum_probs=93.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCc------eE-EEEEccCCCCEEEEEE---------CCCcEEEEeCCCCcE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY------VT-CIQFNPVDDRYFISGS---------LDAKVRIWSIPERQV 642 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~------V~-~v~fsp~dg~~L~sgs---------~Dg~I~IWDl~t~~~ 642 (927)
+.++.++.++.|+-+|..+++.+..+..... +. ...+. +.+++.++ .++.|.-+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 6788888999999999999999888763332 11 12222 24455554 367899999999987
Q ss_pred EEeccCC-C--------------------cE-EEEEECCCCCEEEEEECCC------------------eEEEEECCCCe
Q 002407 643 VDWNDLH-E--------------------MV-TAACYTPDGQGALVGSYKG------------------SCHLYNTSENK 682 (927)
Q Consensus 643 v~~~~~~-~--------------------~V-~sla~spdg~~l~tgs~Dg------------------~I~IwDl~~~~ 682 (927)
+-..... . .+ ...++.+.+..+++++.++ .|.-+|+.+++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 6433221 0 00 1345555667788887665 79999999999
Q ss_pred eeeeccccccccc-ccCCCCC-eEEEE-EcCCCCcEEEEEECCCcEEEEECCcceEEEE
Q 002407 683 LQQKSPINLQNKK-KRSHQRK-ITGFQ-FAPGSSSEVLVTSADSRIRVVDGIDLVHKFK 738 (927)
Q Consensus 683 ~~~~~~i~~~~~~-~~~h~~~-Vtsl~-fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~ 738 (927)
..-.++......- ......+ +..+. ..-.....+++++.+|.+..+|..+....++
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 8877643211000 0011111 11111 1111112577788899999999766555444
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.44 E-value=1.6 Score=46.24 Aligned_cols=107 Identities=14% Similarity=0.034 Sum_probs=85.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEE-EEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVT-AACY 657 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~-sla~ 657 (927)
.+++.|+..+.+.--|..+|..+........|.+-+.- -+++++.|+..|.+++.+..++.....+...+.|. ....
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 56888889999999999999888766666666665554 46789999999999999999997766555444433 3445
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 658 TPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 658 spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
.+++..+..|+.|++.+..|.++...+.+.
T Consensus 102 d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred cCCCceEEEecCCCcEEEecccccceEEec
Confidence 788999999999999999999998887764
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.012 Score=68.30 Aligned_cols=91 Identities=11% Similarity=0.222 Sum_probs=78.4
Q ss_pred CCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceE-EEEEccCCCCEEEEEECCCcEEEEeCCCCcEE
Q 002407 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVT-CIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (927)
Q Consensus 567 ~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~-~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v 643 (927)
...|.-+.|+|. ..+|++..+|.|.+..+. .+.+.++. +...++ +++|.| ||++|+.|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 345788999998 899999999999999998 77788888 777777 999999 9999999999999999999998877
Q ss_pred Ee--ccCCCcEEEEEECC
Q 002407 644 DW--NDLHEMVTAACYTP 659 (927)
Q Consensus 644 ~~--~~~~~~V~sla~sp 659 (927)
.- ......|.++.|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 65 55556788887763
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.18 Score=46.83 Aligned_cols=100 Identities=19% Similarity=0.222 Sum_probs=72.0
Q ss_pred EEEEEecC---C--cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 002407 570 VLDLSWSK---S--QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (927)
Q Consensus 570 V~~l~~sp---d--~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~ 644 (927)
|++|++.. + +.|++|+.|..||+|+-. +.+..+.-+..|++++-.. ...|+.+..+|+|-+|+-... +-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~R--lW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQR--LW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCcce--ee
Confidence 55666543 3 679999999999999854 6778888888999998876 477999999999999975322 22
Q ss_pred eccCCCcEEEEEECC-C--C-CEEEEEECCCeEEE
Q 002407 645 WNDLHEMVTAACYTP-D--G-QGALVGSYKGSCHL 675 (927)
Q Consensus 645 ~~~~~~~V~sla~sp-d--g-~~l~tgs~Dg~I~I 675 (927)
..+.+..++++++.. + | .-|++|-.+|.|-+
T Consensus 76 RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 233344466666544 3 2 36888888887753
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.016 Score=67.43 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=77.0
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEE-EEEECCCCCEEEEEECCCeEEEEECCCCeee
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVT-AACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~-sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
....|.-+.|+| .-.+||.+..+|.|.+..+.-.++....-+...++ +++|.|||+.|++|-.||+|++.|+.++..+
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 345678899999 88899999999999999888555444443555666 9999999999999999999999999998877
Q ss_pred eecccccccccccCCCCCeEEEEEcC
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
.... ......|.++.|.+
T Consensus 98 ~~~~--------~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFL--------FSVETDISKGIWDR 115 (665)
T ss_pred eccc--------cccccchheeeccc
Confidence 7643 24556788888875
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.032 Score=63.71 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=97.6
Q ss_pred EEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCE-------EEEEECCCeEEEEECCCCeeeeeccccccccc
Q 002407 623 FISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQG-------ALVGSYKGSCHLYNTSENKLQQKSPINLQNKK 695 (927)
Q Consensus 623 L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~-------l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~ 695 (927)
|.++.....|+-.|+..|+++..-..+..|+-+.+.|+.+. -++|-.+..|.-||++-.... .+.....+
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q~k 425 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQSK 425 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeeecc
Confidence 44555556788899999999986666767888999997643 355777888999998843321 01111111
Q ss_pred ccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 696 KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 696 ~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
.-.......|++-..+| .|++|+.+|.|++||......+-.......+|..+..+.+|++|+..+ +.++.+-++.
T Consensus 426 qy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccccceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 11333456666666665 799999999999999432222223333467789999999999988776 5566666653
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.11 Score=64.08 Aligned_cols=133 Identities=17% Similarity=0.205 Sum_probs=89.6
Q ss_pred eCCCcEEEEeCCCCcEEEEEecCCceEEEEEcc------CCCCEEEEEECCCcEEEEeCCCC--cEEEe----ccCCCcE
Q 002407 585 SMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNP------VDDRYFISGSLDAKVRIWSIPER--QVVDW----NDLHEMV 652 (927)
Q Consensus 585 s~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp------~dg~~L~sgs~Dg~I~IWDl~t~--~~v~~----~~~~~~V 652 (927)
.....|+-.|+..|+.+..+.....+.-..|.| .+..-.+.|-.+..|..||.+-. +++.. .......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 346789999999999999888333332333434 12344567778889999998763 34421 2233567
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 653 TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 653 ~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
.|++-+.+| +||+|+.+|.|++||-- ++...+ . +.+...+|.+|..+.||. +|++ ..+..|.|++
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT-~-------lp~lG~pI~~iDvt~DGk-wila-Tc~tyLlLi~ 645 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKT-A-------LPGLGDPIIGIDVTADGK-WILA-TCKTYLLLID 645 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeeccc-chhhhh-c-------CCCCCCCeeEEEecCCCc-EEEE-eecceEEEEE
Confidence 888888777 79999999999999943 322111 1 136678999999999997 3433 3455666666
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.99 Score=50.17 Aligned_cols=118 Identities=11% Similarity=0.212 Sum_probs=71.6
Q ss_pred EEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEEC-CCcEEEEeCCC--C----c--EEEeccCCCcEEEEEECC
Q 002407 590 VRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSL-DAKVRIWSIPE--R----Q--VVDWNDLHEMVTAACYTP 659 (927)
Q Consensus 590 V~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~-Dg~I~IWDl~t--~----~--~v~~~~~~~~V~sla~sp 659 (927)
|+..+. .+..++.+. +-..-+.|+|+| +++.|+.+.. .+.|.-|++.. + + .+.....+...-.++...
T Consensus 145 lyr~~p-~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa 222 (307)
T COG3386 145 LYRVDP-DGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA 222 (307)
T ss_pred EEEEcC-CCCEEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence 333343 344444444 355567899999 8877776655 46788887752 1 1 112222334555677788
Q ss_pred CCCEEEEEECCC-eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC-CCCcEEEEE
Q 002407 660 DGQGALVGSYKG-SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP-GSSSEVLVT 719 (927)
Q Consensus 660 dg~~l~tgs~Dg-~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp-dg~~~Llsg 719 (927)
+|.+.+++...| .|.+|+.. ++++..+.+ ....+++++|-- +.+.+++++
T Consensus 223 dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l---------P~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 223 DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL---------PVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCEEEecccCCceEEEECCC-CcEEEEEEC---------CCCCCccceEeCCCcCEEEEEe
Confidence 888776655554 89999998 777776543 225677777764 334333333
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.22 Score=57.90 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=98.2
Q ss_pred cCCceEEEEEccCCCCEEEEEE---CC-CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEE-CCCe--EEEEEC
Q 002407 606 HSDYVTCIQFNPVDDRYFISGS---LD-AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGS-YKGS--CHLYNT 678 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs---~D-g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs-~Dg~--I~IwDl 678 (927)
-...+..-+|+| ++..++... .. ..+.++++.+++..........-....|+|||+.|+... .||. |+++|+
T Consensus 191 ~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 344566677888 665544332 12 358999999987776666666677789999999877654 4554 777788
Q ss_pred CCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE--ECCc-ceEEEEeecCCcceEEEEEecCC
Q 002407 679 SENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV--DGID-LVHKFKGFRNTNSQISASLTANG 755 (927)
Q Consensus 679 ~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw--D~~~-~~~~~~~~~~~~~v~sv~fspdg 755 (927)
..+.... + ....+.-+.=.|+|+|+.++++....|.-.|| +... ....+....... ..-.|+|||
T Consensus 270 ~~~~~~~-L---------t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~--~~p~~SpdG 337 (425)
T COG0823 270 DGKNLPR-L---------TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN--SNPVWSPDG 337 (425)
T ss_pred CCCccee-c---------ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC--cCccCCCCC
Confidence 7766332 1 11222223557999999777777777775555 4221 122222221111 166899999
Q ss_pred CEEEEEECC-Cc--EEEEECCCCC
Q 002407 756 RYVVSASED-SY--VYVWKYEAES 776 (927)
Q Consensus 756 ~~Lasgs~D-g~--I~IWdl~s~~ 776 (927)
++|+..+.. |. |.+.++.++.
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCC
Confidence 999887743 44 6666665544
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.013 Score=41.03 Aligned_cols=37 Identities=30% Similarity=0.549 Sum_probs=32.5
Q ss_pred CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEe
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH 594 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWD 594 (927)
+++..+..|...|.++.|.+. ..+++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677789999999999987 8899999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.79 Score=49.55 Aligned_cols=165 Identities=10% Similarity=0.197 Sum_probs=111.4
Q ss_pred cCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEec--CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 565 GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSH--SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 565 gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h--~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
|-...|.+|.|+|+ ..|++......-.||=...|+.+.++.. -...-.|.+.. ++.+.++--.+..+.++.+....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCc
Confidence 44455999999998 7788888888888887788999998872 23345667776 77777777778888888765542
Q ss_pred EE--------E--eccC-CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccc-ccccccCCCCCeEEEEEc
Q 002407 642 VV--------D--WNDL-HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL-QNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 642 ~v--------~--~~~~-~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~-~~~~~~~h~~~Vtsl~fs 709 (927)
.+ . ...+ +.....++|.|....|+++-...-+.||.+............. +.....-.-..|.++.|.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 11 1 1112 4567889999999999999888888888776433111111100 000001123457888999
Q ss_pred CCCCcEEEEEECCCcEEEEEC
Q 002407 710 PGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 710 pdg~~~Llsgs~Dg~I~VwD~ 730 (927)
+....+++.+.+++.+.-.|.
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred CCCCcEEEEecCCceEEEEec
Confidence 877767777778888887774
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.85 E-value=5 Score=46.50 Aligned_cols=186 Identities=13% Similarity=0.142 Sum_probs=106.8
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-------------------
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE------------------- 639 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t------------------- 639 (927)
.+|..=+.||.+.+++-+.-.....+..---...+.|.+ ..+.|++++.+..|.-|....
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~ 224 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDIS 224 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecHHHhhhcccccccccccccccc
Confidence 568888999999999987665555554333334567787 777888888888888886521
Q ss_pred -CcEE--E-eccCCCcEEEEE---ECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE-----
Q 002407 640 -RQVV--D-WNDLHEMVTAAC---YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ----- 707 (927)
Q Consensus 640 -~~~v--~-~~~~~~~V~sla---~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~----- 707 (927)
++.+ . .+...+.+..+. ++.....+++-+ ..++.+.+.. |.+.....+ .....+++
T Consensus 225 ~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~-G~l~~~krL----------d~~p~~~~~Y~~~ 292 (418)
T PF14727_consen 225 SGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN-GSLRFQKRL----------DYNPSCFCPYRVP 292 (418)
T ss_pred ccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC-CeEEEEEec----------CCceeeEEEEEee
Confidence 1111 0 112223333333 322222333332 4556666653 444443322 11122222
Q ss_pred --EcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 708 --FAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 708 --fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
..+.....+++++.++++.||...+++-..+.......+.-..|..-...|++-+.+|.+.+-=+-+...
T Consensus 293 ~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 293 WYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred cccCCCCceEEEEEecCCeEEEEeCCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence 1222233599999999999998666555444432222222333334455888999999999998887653
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=4 Score=46.96 Aligned_cols=197 Identities=14% Similarity=0.171 Sum_probs=127.2
Q ss_pred EEEEEecCCc-E-EEEEeCCCcEEEEeCCCCcEEEEEecC-CceEEEEEccCCCC-EEEEEECCCcEEEEeCCCCcEEEe
Q 002407 570 VLDLSWSKSQ-H-LLSSSMDKTVRLWHLSSKTCLKIFSHS-DYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQVVDW 645 (927)
Q Consensus 570 V~~l~~spd~-~-L~Sgs~DgtV~lWDl~t~~~~~~~~h~-~~V~~v~fsp~dg~-~L~sgs~Dg~I~IWDl~t~~~v~~ 645 (927)
...+...+++ . .++-.....+...+...........-. ..-..+++++ .+. .+++...+..|.+.|..+.++...
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~-~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNP-AGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCC-CCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 3445555552 2 222222224555554422222211212 4456778888 555 555665678999999888888776
Q ss_pred ccCCCcEEEEEECCCCCEEEEEEC---CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC
Q 002407 646 NDLHEMVTAACYTPDGQGALVGSY---KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (927)
Q Consensus 646 ~~~~~~V~sla~spdg~~l~tgs~---Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D 722 (927)
.........++++|+++.+.++.. ++.+.+.|..+++....... +. .+ ..+++.|++...+++-..+
T Consensus 112 ~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v--------G~-~P-~~~a~~p~g~~vyv~~~~~ 181 (381)
T COG3391 112 IPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV--------GN-TP-TGVAVDPDGNKVYVTNSDD 181 (381)
T ss_pred eeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec--------CC-Cc-ceEEECCCCCeEEEEecCC
Confidence 666668889999999988888766 68899999999888777321 11 22 8899999998666666789
Q ss_pred CcEEEEECCcceEEE-E---eecCCcceEEEEEecCCCEEEEEECC---CcEEEEECCCCCC
Q 002407 723 SRIRVVDGIDLVHKF-K---GFRNTNSQISASLTANGRYVVSASED---SYVYVWKYEAESR 777 (927)
Q Consensus 723 g~I~VwD~~~~~~~~-~---~~~~~~~v~sv~fspdg~~Lasgs~D---g~I~IWdl~s~~~ 777 (927)
+.|.++|........ . ..........+.++++|.++...... +.+.+.|..+...
T Consensus 182 ~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 182 NTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred CeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 999999954332221 1 11122333568899999977666544 4788888877543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=95.66 E-value=4.3 Score=46.09 Aligned_cols=215 Identities=11% Similarity=0.095 Sum_probs=106.5
Q ss_pred EeecCCCceEEEccCCCC-EEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccC-CCCEEEEEE
Q 002407 552 VFALSDKPICSFQGHLDD-VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPV-DDRYFISGS 627 (927)
Q Consensus 552 v~~~s~k~i~~l~gH~~~-V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~-dg~~L~sgs 627 (927)
+.++....+..|..+.+. .....++++ ..|+-......|+-.|+.+.+...++. ....+-...|... ++..++-.-
T Consensus 64 ~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e 143 (386)
T PF14583_consen 64 LLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIE 143 (386)
T ss_dssp EEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEE
T ss_pred EEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEE
Confidence 345555666666654422 223455565 666666666789999999998777776 4555545666432 344433221
Q ss_pred C----------------------CCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCe-----EEEEECCC
Q 002407 628 L----------------------DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGS-----CHLYNTSE 680 (927)
Q Consensus 628 ~----------------------Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~-----I~IwDl~~ 680 (927)
. ...|..-|+.+++....+.....+..+.|+|....+++=+..|- -+||-+++
T Consensus 144 ~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 144 ISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp EEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred EeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence 1 13455668888888888888889999999997766666555431 35564443
Q ss_pred --CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC----CCcEEEEECCcceEEEEeecCCcceEEEEEecC
Q 002407 681 --NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA----DSRIRVVDGIDLVHKFKGFRNTNSQISASLTAN 754 (927)
Q Consensus 681 --~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~----Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspd 754 (927)
.......+ ......+..=-|.|+|..+...+.. +..|.-+|..+......... .....+..++|
T Consensus 224 dg~~~~~v~~--------~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~D 293 (386)
T PF14583_consen 224 DGSNVKKVHR--------RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPD 293 (386)
T ss_dssp TS---EESS-----------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TT
T ss_pred CCCcceeeec--------CCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCC
Confidence 32222110 1222334444588998865554432 23355566554433322211 13445666789
Q ss_pred CCEEEEEECCC----------------cEEEEECCCCC
Q 002407 755 GRYVVSASEDS----------------YVYVWKYEAES 776 (927)
Q Consensus 755 g~~Lasgs~Dg----------------~I~IWdl~s~~ 776 (927)
|++++-=+.|. -|++++++.+.
T Consensus 294 g~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 294 GKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp SSEEEEEE-------------------EEEEEETTTTE
T ss_pred CCEEEecCCCCCccccccccceecCCcEEEEeccccCc
Confidence 99887544432 46677776543
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.81 Score=55.52 Aligned_cols=150 Identities=13% Similarity=0.114 Sum_probs=85.2
Q ss_pred CCEEEEEecCC-cEEEEEe------CCC--cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECC---------
Q 002407 568 DDVLDLSWSKS-QHLLSSS------MDK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD--------- 629 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs------~Dg--tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D--------- 629 (927)
..+...+++|+ +.++..- .|. .|.+++... .. ..+......+.-.|+| ++..|.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECC-CCCceEEEecCcceEEEecc
Confidence 46778889998 4444333 243 455556532 22 3333333488899999 87777666432
Q ss_pred ---CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEE---EECCCCeeeeecccccccccccCCCCCe
Q 002407 630 ---AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHL---YNTSENKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 630 ---g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~I---wDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
+.+.+.++..+.... .....|..+.|+|||+.++... ++.|++ -....+.........+ .......+
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l----~~~l~~~~ 499 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREV----GPGLGDTA 499 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEe----ecccCCcc
Confidence 233333444443322 3456799999999999988866 577777 4444454211111000 01233346
Q ss_pred EEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 704 TGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
..+.|.+++. |+++..++...+|.
T Consensus 500 ~~l~W~~~~~--L~V~~~~~~~~v~~ 523 (591)
T PRK13616 500 VSLDWRTGDS--LVVGRSDPEHPVWY 523 (591)
T ss_pred ccceEecCCE--EEEEecCCCCceEE
Confidence 7899999875 44555555444554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.53 Score=55.03 Aligned_cols=177 Identities=10% Similarity=0.034 Sum_probs=93.0
Q ss_pred cCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 002407 565 GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (927)
Q Consensus 565 gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~ 644 (927)
...-....|.++|++.+++.+.||...|+.....+... .+.-..++|.+ .++ +++-....+|.|+.--+.+...
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~----~G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA----FGSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE----EEE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT-
T ss_pred CCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc----cCceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccce
Confidence 34445778999999777777889998898854443322 24455678887 454 6666668889996322222212
Q ss_pred eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 645 WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
.+..+..+..+-. |..|++.+.+ .|.+||+.+++.+..+.+ ..|..+.|++++. +++..+ +..
T Consensus 104 ~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-----------~~vk~V~Ws~~g~-~val~t-~~~ 166 (443)
T PF04053_consen 104 SIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV-----------SAVKYVIWSDDGE-LVALVT-KDS 166 (443)
T ss_dssp ----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS------------E-EEEEE-TTSS-EEEEE--S-S
T ss_pred EEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec-----------CCCcEEEEECCCC-EEEEEe-CCe
Confidence 2233334444443 7777777654 899999999998887542 2388999999987 555555 446
Q ss_pred EEEEECCc-------------ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEE
Q 002407 725 IRVVDGID-------------LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYV 769 (927)
Q Consensus 725 I~VwD~~~-------------~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~I 769 (927)
+.|++... ....... -...|.+.+|..+ -+|.|. .. +|+-
T Consensus 167 i~il~~~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d-~fiYtT-~~-~lkY 219 (443)
T PF04053_consen 167 IYILKYNLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVED-CFIYTT-SN-HLKY 219 (443)
T ss_dssp EEEEEE-HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETT-EEEEE--TT-EEEE
T ss_pred EEEEEecchhcccccccCchhceEEEEE--ecceeEEEEEEcC-EEEEEc-CC-eEEE
Confidence 77766221 2222221 1455777788766 333333 33 5555
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.33 Score=51.91 Aligned_cols=225 Identities=19% Similarity=0.204 Sum_probs=122.3
Q ss_pred EEEeccCcccccceeee---eEeecCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEecCcC-cccceeecccccCcc
Q 002407 433 VRQYGKSCKDLTALYKC---QEIQAHNGSIWSIKFSLDGRYLASAGE-----DCVIHVWQVVES-ERKGELLEKQEDGHL 503 (927)
Q Consensus 433 V~i~~~~s~~l~~l~~~---q~L~gH~~~I~~vafSpdG~~LaSgs~-----DgtVrVWdv~~~-~~~~~l~~~~~~~~~ 503 (927)
-.+++....+...+... +.+.||. .|||||.+|...-. -|.|-|||...+ +.+.++ ..+-
T Consensus 93 ~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-----~t~G 161 (366)
T COG3490 93 AMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-----STHG 161 (366)
T ss_pred EEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc-----ccCC
Confidence 34555554444333322 2355664 49999999987643 378999998754 233333 2222
Q ss_pred ccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEee-cCCCceEE--Ec--cCCCCEEEEEecCC
Q 002407 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA-LSDKPICS--FQ--GHLDDVLDLSWSKS 578 (927)
Q Consensus 504 ~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~-~s~k~i~~--l~--gH~~~V~~l~~spd 578 (927)
-.-..+.+.+||..++..... |+.. ....+..++++.+.....+.+ .++..+.+ +. -+.-.|..++..++
T Consensus 162 iGpHev~lm~DGrtlvvanGG--Ieth---pdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~d 236 (366)
T COG3490 162 IGPHEVTLMADGRTLVVANGG--IETH---PDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRD 236 (366)
T ss_pred cCcceeEEecCCcEEEEeCCc--eecc---cccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCC
Confidence 333466788898888776432 2111 011112222222222222222 33333322 22 34556778888777
Q ss_pred cEEEEEeC------CCcEEEEeCCCCcEEEEEe--------cCCceEEEEEccCCCCEEEEEE-CCCcEEEEeCCCCcEE
Q 002407 579 QHLLSSSM------DKTVRLWHLSSKTCLKIFS--------HSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPERQVV 643 (927)
Q Consensus 579 ~~L~Sgs~------DgtV~lWDl~t~~~~~~~~--------h~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~t~~~v 643 (927)
+.++.++. |---.+=-...++.++.+. ...+|-+|+.+- +..+++..+ ..+...+||..++.++
T Consensus 237 gtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~-~~glV~lTSP~GN~~vi~da~tG~vv 315 (366)
T COG3490 237 GTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR-RDGLVALTSPRGNRAVIWDAATGAVV 315 (366)
T ss_pred CcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc-cCCeEEEecCCCCeEEEEEcCCCcEE
Confidence 77666653 1111122222344444332 456788899987 444444444 4455789999999988
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEE
Q 002407 644 DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYN 677 (927)
Q Consensus 644 ~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwD 677 (927)
......+. .-.-+...-|++.+..|.|.+|.
T Consensus 316 ~~a~l~da---aGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 316 SEAALPDA---AGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred eccccccc---ccceeccCceEEecCCceEEecc
Confidence 76554432 12223455677888899998884
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.03 E-value=5.7 Score=47.78 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=39.3
Q ss_pred CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccc
Q 002407 630 AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (927)
Q Consensus 630 g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i 689 (927)
|.|.-+|+.+++++-..........-.+.-.+..+++++.+|.++.+|.++++.+....+
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 457778888887765443332211111122455777788899999999999998877643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.01 E-value=3.7 Score=47.10 Aligned_cols=143 Identities=14% Similarity=0.170 Sum_probs=73.7
Q ss_pred CcEEEEeCCCCcEEEEEec----CCceEEEEEccCCCCEEEEEEC--------------------CCcEEEEeCCCCcEE
Q 002407 588 KTVRLWHLSSKTCLKIFSH----SDYVTCIQFNPVDDRYFISGSL--------------------DAKVRIWSIPERQVV 643 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h----~~~V~~v~fsp~dg~~L~sgs~--------------------Dg~I~IWDl~t~~~v 643 (927)
|-+.+.|-++.+....... ...-..+-|.| ..+.++|... -.+|.+||+.+.+++
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~ 235 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLL 235 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEe
Confidence 3477777777666665542 33456788888 7788888643 356999999999999
Q ss_pred EeccCC---CcEEEEEECC--CCCEEEEE-ECCCeEEEE-ECCCCeeeeecccccccccc------------cCCCCCeE
Q 002407 644 DWNDLH---EMVTAACYTP--DGQGALVG-SYKGSCHLY-NTSENKLQQKSPINLQNKKK------------RSHQRKIT 704 (927)
Q Consensus 644 ~~~~~~---~~V~sla~sp--dg~~l~tg-s~Dg~I~Iw-Dl~~~~~~~~~~i~~~~~~~------------~~h~~~Vt 704 (927)
+.+... ..+..+-|.. +..+-++| -...+|..| ....+....+..+.+..++. .....-|+
T Consensus 236 Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Lit 315 (461)
T PF05694_consen 236 QTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLIT 315 (461)
T ss_dssp EEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-----
T ss_pred eEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceE
Confidence 887776 3455666654 44443333 334455444 44566655444444333221 11135589
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECC
Q 002407 705 GFQFAPGSSSEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I~VwD~~ 731 (927)
.|.++.|++.+.+++-.+|.|+.||..
T Consensus 316 DI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 316 DILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp -EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred eEEEccCCCEEEEEcccCCcEEEEecC
Confidence 999999998777777789999999954
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.99 E-value=3.6 Score=45.75 Aligned_cols=191 Identities=12% Similarity=0.062 Sum_probs=112.0
Q ss_pred EEecCC-c-EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE-EeccCC
Q 002407 573 LSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLH 649 (927)
Q Consensus 573 l~~spd-~-~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v-~~~~~~ 649 (927)
..|.++ + .+.+--..+.|.-|+..+++. ..+.+...+.++..-. .+..|+++. ..+.+++..++..+ .+....
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 356666 4 345555677888898876643 4455555556655544 444555543 33667777665552 222211
Q ss_pred -----CcEEEEEECCCCCEEEEEEC-----------CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 650 -----EMVTAACYTPDGQGALVGSY-----------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 650 -----~~V~sla~spdg~~l~tgs~-----------Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
...+.+...|+|.+.+.... -|.|+.+|. .+...... ..+-..-++|+|+|+++
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~---------~~~~~~~NGla~SpDg~ 175 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL---------DDDLTIPNGLAFSPDGK 175 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee---------cCcEEecCceEECCCCC
Confidence 35677888999876655433 134555554 33333221 23345567899999998
Q ss_pred cEEEEEECCCcEEEEECCc-------ceEEEEeecCCcceEEEEEecCCCEEEEEECCC-cEEEEECCCCCCc
Q 002407 714 SEVLVTSADSRIRVVDGID-------LVHKFKGFRNTNSQISASLTANGRYVVSASEDS-YVYVWKYEAESRP 778 (927)
Q Consensus 714 ~~Llsgs~Dg~I~VwD~~~-------~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg-~I~IWdl~s~~~~ 778 (927)
.++++=+..+.|..|+... ....+.........-.++...+|.+.+++-.+| .|.+|+.+ +++.
T Consensus 176 tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~ 247 (307)
T COG3386 176 TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLL 247 (307)
T ss_pred EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEE
Confidence 6666667778898887431 111111111234445677788888876555554 89999887 4443
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=94.97 E-value=6.7 Score=42.51 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=84.3
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-------------
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD------------- 644 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~------------- 644 (927)
++.|+.|+.+| |.++++..........+...|..+...| +-+.|++-+ |+.|.++++..-....
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 36799999988 9999994333333344444599999998 666666654 5999999987644333
Q ss_pred --eccCCCcEEEEE--ECCCCCEEEEEECCCeEEEEECCCC-----eeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 645 --WNDLHEMVTAAC--YTPDGQGALVGSYKGSCHLYNTSEN-----KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 645 --~~~~~~~V~sla--~spdg~~l~tgs~Dg~I~IwDl~~~-----~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
.......+...+ -...+...++......|.+|..... +...++ .....+..++|.++ .
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~----------~lp~~~~~i~~~~~---~ 150 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI----------SLPDPPSSIAFLGN---K 150 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE----------EcCCCcEEEEEeCC---E
Confidence 111223444444 1223334444444558888887663 222222 34477889999853 5
Q ss_pred EEEEECCCcEEEEECC
Q 002407 716 VLVTSADSRIRVVDGI 731 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~ 731 (927)
++++..++ ..+.|..
T Consensus 151 i~v~~~~~-f~~idl~ 165 (275)
T PF00780_consen 151 ICVGTSKG-FYLIDLN 165 (275)
T ss_pred EEEEeCCc-eEEEecC
Confidence 66666444 6677754
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.7 Score=56.08 Aligned_cols=160 Identities=11% Similarity=0.115 Sum_probs=87.3
Q ss_pred CceEEEEEccCCCCEEEEEE------CCC--cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCe-EEEEEC
Q 002407 608 DYVTCIQFNPVDDRYFISGS------LDA--KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGS-CHLYNT 678 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs------~Dg--~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~-I~IwDl 678 (927)
..+...+++| +++.++..- .|. .|.+++.. +....+.... ..+.-.|+|+|..|++...... +++.+-
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC-CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999 888776655 243 45555643 3333333333 4888999999998888764322 333332
Q ss_pred CCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE---EECCcceEEE----Ee-ecCCcceEEEE
Q 002407 679 SENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV---VDGIDLVHKF----KG-FRNTNSQISAS 750 (927)
Q Consensus 679 ~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V---wD~~~~~~~~----~~-~~~~~~v~sv~ 750 (927)
.....+....+....... .....|..+.|+|||..+.++. +++|+| -........+ .. ......+..+.
T Consensus 427 ~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 427 PATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred CCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 221111111111100001 2345799999999998544444 477777 3311111111 11 11222357789
Q ss_pred EecCCCEEEEEECCCcEEEEECCC
Q 002407 751 LTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 751 fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
|..++.++ .+..++...+|.+.-
T Consensus 504 W~~~~~L~-V~~~~~~~~v~~v~v 526 (591)
T PRK13616 504 WRTGDSLV-VGRSDPEHPVWYVNL 526 (591)
T ss_pred EecCCEEE-EEecCCCCceEEEec
Confidence 99999865 555555555665543
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.77 E-value=8.4 Score=42.72 Aligned_cols=155 Identities=13% Similarity=0.181 Sum_probs=78.0
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE-EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCCee
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNT-SENKL 683 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~-v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl-~~~~~ 683 (927)
....+..+..++ ++.+++++..-..+.-||--...- .........|..|.|.|++...+++ ..|.|++=+. .....
T Consensus 143 ~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence 456788888888 998888876655566777543322 2233345789999999998766654 8888888772 22222
Q ss_pred eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE-ECCc-ceEEEEeecCCcceEEEEEecCCCEEEEE
Q 002407 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV-DGID-LVHKFKGFRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw-D~~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasg 761 (927)
...... ........+..++|.+++. +.+++..|.+.+= |..+ ....-....-......+.|.++.+-+|.|
T Consensus 221 w~~~~~-----~~~~~~~~~ld~a~~~~~~--~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 221 WSEPII-----PIKTNGYGILDLAYRPPNE--IWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp E---B------TTSS--S-EEEEEESSSS---EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred cccccC-----CcccCceeeEEEEecCCCC--EEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC
Confidence 211111 1123445589999998764 5556666655553 3322 22222222234457778887665555554
Q ss_pred ECCCcEEEE
Q 002407 762 SEDSYVYVW 770 (927)
Q Consensus 762 s~Dg~I~IW 770 (927)
.+|.|.-|
T Consensus 294 -~~G~ll~~ 301 (302)
T PF14870_consen 294 -QDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred -CCcEEEEe
Confidence 68877655
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.66 E-value=5.3 Score=44.63 Aligned_cols=207 Identities=13% Similarity=0.099 Sum_probs=113.9
Q ss_pred EEecCC-cEEEEE--eCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCC-CCcEEE----
Q 002407 573 LSWSKS-QHLLSS--SMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP-ERQVVD---- 644 (927)
Q Consensus 573 l~~spd-~~L~Sg--s~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~-t~~~v~---- 644 (927)
++++.+ .+++.. +--..|-|-|+..++.+..+...+...- -|...+-|.+-|.||.+....+. .|+...
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~i---yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLI---YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEE---EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEE---EecCCCceEEEecCCceEEEEECCCCCEeEeecc
Confidence 345555 333332 3345678888888888877765543322 23234568889999999998887 455432
Q ss_pred eccC-CCc-EEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccc---ccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 645 WNDL-HEM-VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK---KRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 645 ~~~~-~~~-V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~---~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
.+.. .+. +..-++...+..++--+.+|.|+--|+..........+.+.... ..-..+.-.-+++++....+++..
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 1211 122 23444555566666678899999999987764443333221100 001112233466776555333332
Q ss_pred E-------CCC--cEEEEECCcceEEEEeecCCcceEEEEEecCCC-EEEEEE-CCCcEEEEECCCCCCcccccc
Q 002407 720 S-------ADS--RIRVVDGIDLVHKFKGFRNTNSQISASLTANGR-YVVSAS-EDSYVYVWKYEAESRPSRSKS 783 (927)
Q Consensus 720 s-------~Dg--~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~-~Lasgs-~Dg~I~IWdl~s~~~~~~~~~ 783 (927)
- .|+ .|-+||..+.....+... ...+.++.++.+.+ +|++.+ .++.|.|||..+++.......
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 1 122 366677655544444332 23466888888776 665554 578999999999876655543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.65 E-value=4.4 Score=43.97 Aligned_cols=166 Identities=13% Similarity=0.160 Sum_probs=106.2
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC--CcEEEEEECCCCCEEEEEECCCeEEEEECCCCee
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH--EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~--~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~ 683 (927)
....|.++.|+| +.+.|++......-.||=...|+++..+... .....+.|.-+|+++++--.++.+.++.+.....
T Consensus 84 ~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 84 ETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred ccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 344599999999 8888888887777778877788888766554 3566788888888888888888888887765532
Q ss_pred eeec---ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEee-----cC-----CcceEEEE
Q 002407 684 QQKS---PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGF-----RN-----TNSQISAS 750 (927)
Q Consensus 684 ~~~~---~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~-----~~-----~~~v~sv~ 750 (927)
.... .+.+.. ........-+++|.|... .|+++-+-.-+.||........+..+ .. -..+.++.
T Consensus 163 ~~~~~~~~i~L~~--~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 163 VISAKVQKIPLGT--TNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred EEeccceEEeccc--cCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 2211 122211 112266788999999876 67777777777776532111111111 00 12244567
Q ss_pred Eec-CCCEEEEEECCCcEEEEECCCC
Q 002407 751 LTA-NGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 751 fsp-dg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|++ .+.+|+-+.+++.+.-.+....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 775 4556666667777777776654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=1.5 Score=53.08 Aligned_cols=186 Identities=9% Similarity=0.060 Sum_probs=95.9
Q ss_pred CCcEEEEEeCC------CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCC-----cEEEEeCCCCcEE
Q 002407 577 KSQHLLSSSMD------KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDA-----KVRIWSIPERQVV 643 (927)
Q Consensus 577 pd~~L~Sgs~D------gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg-----~I~IWDl~t~~~v 643 (927)
.+..++.|+.+ ..+..||..+......-. ....-.+++.. ++++.+.|+.++ .+..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 34556666643 347788888775432222 11111122222 677888888764 3788998876544
Q ss_pred EeccCCC---cEEEEEECCCCCEEEEEECCC-----------------------eEEEEECCCCeeeeeccccccccccc
Q 002407 644 DWNDLHE---MVTAACYTPDGQGALVGSYKG-----------------------SCHLYNTSENKLQQKSPINLQNKKKR 697 (927)
Q Consensus 644 ~~~~~~~---~V~sla~spdg~~l~tgs~Dg-----------------------~I~IwDl~~~~~~~~~~i~~~~~~~~ 697 (927)
.....+. ....+ .-+|+..++|+.++ .+..||..+.+......+..
T Consensus 381 ~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~------ 452 (557)
T PHA02713 381 MLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT------ 452 (557)
T ss_pred ECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc------
Confidence 3322222 11122 23677888887642 47789988876554322110
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEECC------CcEEEEECCc-ceEE-EEeecCCcceEEEEEecCCCEEEEEECCC--cE
Q 002407 698 SHQRKITGFQFAPGSSSEVLVTSAD------SRIRVVDGID-LVHK-FKGFRNTNSQISASLTANGRYVVSASEDS--YV 767 (927)
Q Consensus 698 ~h~~~Vtsl~fspdg~~~Llsgs~D------g~I~VwD~~~-~~~~-~~~~~~~~~v~sv~fspdg~~Lasgs~Dg--~I 767 (927)
. ... .+++.. ++. +.++|+.+ ..+..||..+ ..-. ............++ .-+|++.++|+.++ .+
T Consensus 453 ~-r~~-~~~~~~-~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~-~~~~~iyv~Gg~~~~~~~ 527 (557)
T PHA02713 453 G-TIR-PGVVSH-KDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI-LHDNTIMMLHCYESYMLQ 527 (557)
T ss_pred c-ccc-CcEEEE-CCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE-EECCEEEEEeeecceeeh
Confidence 0 011 122222 233 66666654 2466788554 2211 11111111111222 23778888999888 67
Q ss_pred EEEECCCCCC
Q 002407 768 YVWKYEAESR 777 (927)
Q Consensus 768 ~IWdl~s~~~ 777 (927)
..||..+.+-
T Consensus 528 e~yd~~~~~W 537 (557)
T PHA02713 528 DTFNVYTYEW 537 (557)
T ss_pred hhcCcccccc
Confidence 7777776554
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.062 Score=55.69 Aligned_cols=141 Identities=18% Similarity=0.122 Sum_probs=73.1
Q ss_pred EEEEECCCcEEEEeCCCCcEEEe--ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCC
Q 002407 623 FISGSLDAKVRIWSIPERQVVDW--NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQ 700 (927)
Q Consensus 623 L~sgs~Dg~I~IWDl~t~~~v~~--~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~ 700 (927)
|..-+.|+.|+-++++..+.... ..+... ...-.-+..+++|+.+|.|++|............ ....
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~--------~s~~ 101 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRV--------CSGE 101 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhh--------hccc
Confidence 44456677787777765433211 111111 1111235679999999999999887321111110 1122
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce-EEEEeecCCcceEEEEEecCCCEEEEE--ECCCcEEEEECCC
Q 002407 701 RKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV-HKFKGFRNTNSQISASLTANGRYVVSA--SEDSYVYVWKYEA 774 (927)
Q Consensus 701 ~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~-~~~~~~~~~~~v~sv~fspdg~~Lasg--s~Dg~I~IWdl~s 774 (927)
..|-++.-.-+...+..+++.|+.|+.|+..... .-+.++....++..+.....+++|+.+ |.|..++.|++..
T Consensus 102 e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 102 ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 2233322222222388899999999999953322 122222222344444445555566665 6666666666654
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.50 E-value=18 Score=45.26 Aligned_cols=196 Identities=12% Similarity=0.145 Sum_probs=107.0
Q ss_pred CCCEEEEE--ecCC--cEEEEEeCCCcEEEEeCCCC-cEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 567 LDDVLDLS--WSKS--QHLLSSSMDKTVRLWHLSSK-TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 567 ~~~V~~l~--~spd--~~L~Sgs~DgtV~lWDl~t~-~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
-..++.+. +.++ .+|+.+--+ .-++..+... +.............+..+-..++.|+=.. ...|++++-. +.
T Consensus 404 ikg~w~lk~~v~~~~d~ylvlsf~~-eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~-~~ 480 (1096)
T KOG1897|consen 404 IKGMWSLKSMVDENYDNYLVLSFIS-ETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA-GL 480 (1096)
T ss_pred ccceeEeeccccccCCcEEEEEecc-ceEEEEEccceEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcch-hh
Confidence 34455665 4333 444444333 3344444432 11111112333344444444455544333 3458888754 34
Q ss_pred EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC--CCc---EE
Q 002407 642 VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG--SSS---EV 716 (927)
Q Consensus 642 ~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd--g~~---~L 716 (927)
.-.|.... .++....+.+...+++++.++.+...++....+..... +.....|.|+.++|- ++. ++
T Consensus 481 ~~~W~~p~-~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~--------~~~e~evaCLDisp~~d~~~~s~~~ 551 (1096)
T KOG1897|consen 481 RSEWRPPG-KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSH--------KEFEYEVACLDISPLGDAPNKSRLL 551 (1096)
T ss_pred hhcccCCC-ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeee--------heecceeEEEecccCCCCCCcceEE
Confidence 44444443 34444445555678888878888888887766443322 345577999999875 343 78
Q ss_pred EEEECCCcEEEEEC-Ccce-EE---EEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 717 LVTSADSRIRVVDG-IDLV-HK---FKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 717 lsgs~Dg~I~VwD~-~~~~-~~---~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
++|..+..+.+.-. .+.. .. +.+..-...|.-.+|-.|..+|.++..||.+.-|-+..
T Consensus 552 aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 552 AVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred EEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 88887777666431 1111 11 11222233455556667789999999999987665543
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.45 E-value=2.1 Score=45.99 Aligned_cols=201 Identities=11% Similarity=0.078 Sum_probs=116.2
Q ss_pred EEEEecCC--cEEEEEeCCCc-EEEEeCCCCcEEEEEe---cCCceEEEEEccCCCCEEEEEECC-----CcEEEEeCCC
Q 002407 571 LDLSWSKS--QHLLSSSMDKT-VRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLD-----AKVRIWSIPE 639 (927)
Q Consensus 571 ~~l~~spd--~~L~Sgs~Dgt-V~lWDl~t~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs~D-----g~I~IWDl~t 639 (927)
..|+++|. .-++.+-.-|+ ..++|....+...++. ....--.=.|+| ++.+|+..-.| |.|-|||.+.
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence 35777776 33555666565 5688998887766654 122233446899 99998876544 6799999885
Q ss_pred Cc--EEEeccCCCcEEEEEECCCCCEEEEEEC------------------CCeEEEEECCCCeeeeecccccccccccCC
Q 002407 640 RQ--VVDWNDLHEMVTAACYTPDGQGALVGSY------------------KGSCHLYNTSENKLQQKSPINLQNKKKRSH 699 (927)
Q Consensus 640 ~~--~v~~~~~~~~V~sla~spdg~~l~tgs~------------------Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h 699 (927)
+- +-.+..+.-....+.+.+||+.++++.. .-.+.+.|..++.++.+..+.. ..+
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~-----~l~ 224 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA-----SLR 224 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch-----hhh
Confidence 42 2234444456778999999999888643 1245556666666665544321 134
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCc-------EEEEECCcceEEEEee-----cCCcceEEEEEecCCCEEEEEECCC-c
Q 002407 700 QRKITGFQFAPGSSSEVLVTSADSR-------IRVVDGIDLVHKFKGF-----RNTNSQISASLTANGRYVVSASEDS-Y 766 (927)
Q Consensus 700 ~~~Vtsl~fspdg~~~Llsgs~Dg~-------I~VwD~~~~~~~~~~~-----~~~~~v~sv~fspdg~~Lasgs~Dg-~ 766 (927)
...|..+...++|. +++.+-..|. |-++-..+.+..+... .-...|-+++.+.+..+++..+-.| .
T Consensus 225 ~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~ 303 (366)
T COG3490 225 QLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR 303 (366)
T ss_pred hcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence 45577777777764 2222211111 1111111111111111 0123456777776666666666544 5
Q ss_pred EEEEECCCCCCc
Q 002407 767 VYVWKYEAESRP 778 (927)
Q Consensus 767 I~IWdl~s~~~~ 778 (927)
..|||..++...
T Consensus 304 ~vi~da~tG~vv 315 (366)
T COG3490 304 AVIWDAATGAVV 315 (366)
T ss_pred EEEEEcCCCcEE
Confidence 779999997643
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.29 E-value=4.7 Score=46.27 Aligned_cols=226 Identities=12% Similarity=0.057 Sum_probs=104.3
Q ss_pred cEEEEEe-CCCcEEEEeCCC----CcEEEEEe----cC----CceEEEEEccCCCCEEEEEEC--C----CcEEEEeCCC
Q 002407 579 QHLLSSS-MDKTVRLWHLSS----KTCLKIFS----HS----DYVTCIQFNPVDDRYFISGSL--D----AKVRIWSIPE 639 (927)
Q Consensus 579 ~~L~Sgs-~DgtV~lWDl~t----~~~~~~~~----h~----~~V~~v~fsp~dg~~L~sgs~--D----g~I~IWDl~t 639 (927)
.+|+..+ ..+.|+|.|+.+ .+..+++. +. .....+..-| ++++++++-. + |.+.++|-.+
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 5566666 678899999884 34555553 11 1223344456 7888888633 2 4588888887
Q ss_pred CcEEEeccC----CCcEEEEEECCCCCEEEEEEC--------------------CCeEEEEECCCCeeeeeccccccccc
Q 002407 640 RQVVDWNDL----HEMVTAACYTPDGQGALVGSY--------------------KGSCHLYNTSENKLQQKSPINLQNKK 695 (927)
Q Consensus 640 ~~~v~~~~~----~~~V~sla~spdg~~l~tgs~--------------------Dg~I~IwDl~~~~~~~~~~i~~~~~~ 695 (927)
.+++..-.. ...-..+-|.|..+.+++... ..++++||+.+.+.++.+.+.
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg----- 241 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG----- 241 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES------
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC-----
Confidence 766643222 123456667787777777432 357999999999999887642
Q ss_pred ccCCCCCeEEEEEcC--CCCcEEEEEECCCcEEEEEC---Ccc--eEEEEeec----------C-------CcceEEEEE
Q 002407 696 KRSHQRKITGFQFAP--GSSSEVLVTSADSRIRVVDG---IDL--VHKFKGFR----------N-------TNSQISASL 751 (927)
Q Consensus 696 ~~~h~~~Vtsl~fsp--dg~~~Llsgs~Dg~I~VwD~---~~~--~~~~~~~~----------~-------~~~v~sv~f 751 (927)
........+.|.. +...-++.+.-.++|..|-. ... ........ - ..-++.+.+
T Consensus 242 --~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 242 --EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp --TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred --CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 1122344566654 33434444555556655531 111 11111100 0 234688999
Q ss_pred ecCCCEEEEEE-CCCcEEEEECCCCCCcccccccceeee----------eeeecCCCeEEEEecCCceeEEe
Q 002407 752 TANGRYVVSAS-EDSYVYVWKYEAESRPSRSKSITVTHS----------YEHFHCQDVSVAIPWPGVGDTWG 812 (927)
Q Consensus 752 spdg~~Lasgs-~Dg~I~IWdl~s~~~~~~~~~~~~~~~----------~~~~~~~~v~vavs~~g~~~i~~ 812 (927)
|.|.++|...+ .+|.|+.||+.....|...-.+..... -..+...-.++-++++|....++
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 99999998776 689999999998776643322211111 01122223566788888864443
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.23 E-value=3.1 Score=43.58 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=42.6
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 655 la~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
+++.-+|++.++.-..++|...|..+++++.++.+ ....|++++|--.+-..+.++
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl---------Pt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL---------PTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc---------CCCceEEEEecCCCccEEEEE
Confidence 45566888888888899999999999999988753 367899999975432344443
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=93.91 E-value=9.9 Score=47.65 Aligned_cols=202 Identities=10% Similarity=0.073 Sum_probs=114.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCCce---------EEEEEcc---------------CCCCEEEEEECCCcEE
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYV---------TCIQFNP---------------VDDRYFISGSLDAKVR 633 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V---------~~v~fsp---------------~dg~~L~sgs~Dg~I~ 633 (927)
++.|+.++.++.|.-.|..+|+.+..+.....+ ..+.+.. ..+..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 478888888999999999999988887633222 1223321 1345788899999999
Q ss_pred EEeCCCCcEEEeccCCCcEE-------------EEEECC--CCCEEEEEEC----------CCeEEEEECCCCeeeeecc
Q 002407 634 IWSIPERQVVDWNDLHEMVT-------------AACYTP--DGQGALVGSY----------KGSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 634 IWDl~t~~~v~~~~~~~~V~-------------sla~sp--dg~~l~tgs~----------Dg~I~IwDl~~~~~~~~~~ 688 (927)
-.|..+++.+..+..+..+. .+.-.| .+..+++|+. +|.|+-||..++++.-.+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999999876544332221 111122 2345666643 6889999999999887764
Q ss_pred cccccccccC--------CCCCe-EEEEEcCCCCcEEEEEEC------------------CCcEEEEECCcceEEEEeec
Q 002407 689 INLQNKKKRS--------HQRKI-TGFQFAPGSSSEVLVTSA------------------DSRIRVVDGIDLVHKFKGFR 741 (927)
Q Consensus 689 i~~~~~~~~~--------h~~~V-tsl~fspdg~~~Llsgs~------------------Dg~I~VwD~~~~~~~~~~~~ 741 (927)
.......... ....+ ..+++.+... +++.... .+.|.-.|..+...+...+.
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g-lvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG-LVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCC-eEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 3211000000 00111 2334555433 3333221 13344444333333332221
Q ss_pred --CC-------cceEEEEEec-CCC---EEEEEECCCcEEEEECCCCCCccc
Q 002407 742 --NT-------NSQISASLTA-NGR---YVVSASEDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 742 --~~-------~~v~sv~fsp-dg~---~Lasgs~Dg~I~IWdl~s~~~~~~ 780 (927)
|. ....-+.+.. +|+ .|+.++.+|.+++.|-++++.+..
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 11 1111122323 563 789999999999999999876543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.79 Score=52.88 Aligned_cols=136 Identities=13% Similarity=0.186 Sum_probs=94.0
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCC-------EEEEEECCCcEEEEeCCCCc--EEEeccCC--
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDR-------YFISGSLDAKVRIWSIPERQ--VVDWNDLH-- 649 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~-------~L~sgs~Dg~I~IWDl~t~~--~v~~~~~~-- 649 (927)
|.++.....|+-.|++.|+.+........|+-+.+.| +.+ .-+.|-.+..|.-||.+-.. .+.+...+
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 4455556778999999999999988666688888887 432 23446667889999986432 23333222
Q ss_pred ---CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 650 ---EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 650 ---~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
....|++-..+| +|++|+.+|.|++||- .+....+. +.+...+|+.+..+.+|. .+.+..+..+.
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTA--------lPgLG~~I~hVdvtadGK--wil~Tc~tyLl 495 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTA--------LPGLGDAIKHVDVTADGK--WILATCKTYLL 495 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhc--------ccccCCceeeEEeeccCc--EEEEecccEEE
Confidence 355666666666 8999999999999997 33332222 147788999999999996 34445566676
Q ss_pred EEE
Q 002407 727 VVD 729 (927)
Q Consensus 727 VwD 729 (927)
+.+
T Consensus 496 Li~ 498 (644)
T KOG2395|consen 496 LID 498 (644)
T ss_pred EEE
Confidence 666
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=93.47 E-value=9.8 Score=45.76 Aligned_cols=197 Identities=13% Similarity=0.115 Sum_probs=113.2
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCC--ceEE----------EEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSD--YVTC----------IQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~--~V~~----------v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~ 645 (927)
++.|+.++.++.|+-+|..+++.+..+.... .+.. +++ .+..++.++.|+.|.-+|..+++++-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 4788888889999999999999888776322 1111 222 234677888899999999999998754
Q ss_pred ccCCCc--EEEEEECC--CCCEEEEEEC------CCeEEEEECCCCeeeeeccccccccc--------------------
Q 002407 646 NDLHEM--VTAACYTP--DGQGALVGSY------KGSCHLYNTSENKLQQKSPINLQNKK-------------------- 695 (927)
Q Consensus 646 ~~~~~~--V~sla~sp--dg~~l~tgs~------Dg~I~IwDl~~~~~~~~~~i~~~~~~-------------------- 695 (927)
...... -..+.-+| .+..++++.. +|.|..+|..+++.+-.+........
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 432211 00111122 1234555543 68999999999998776543211100
Q ss_pred --ccCCCCCe-EEEEEcCCCCcEEEEEECC-----C-----------cEEEEECCc--ceEEEEeecCCc-------ceE
Q 002407 696 --KRSHQRKI-TGFQFAPGSSSEVLVTSAD-----S-----------RIRVVDGID--LVHKFKGFRNTN-------SQI 747 (927)
Q Consensus 696 --~~~h~~~V-tsl~fspdg~~~Llsgs~D-----g-----------~I~VwD~~~--~~~~~~~~~~~~-------~v~ 747 (927)
...-...+ ..+.+.|... +|..+... + .|.-.|..+ ..-.|+...|.. ...
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~-lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETN-LIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CccccCCCCccCceeEcCCCC-eEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 00001112 1345666544 44444322 2 344444333 333333322211 111
Q ss_pred EEEEecCCC---EEEEEECCCcEEEEECCCCCCc
Q 002407 748 SASLTANGR---YVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 748 sv~fspdg~---~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
-+.+..+|+ .|+.+..+|.+++.|-.+++.+
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 223335776 7889999999999999998764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.46 E-value=17 Score=45.30 Aligned_cols=34 Identities=24% Similarity=0.465 Sum_probs=28.4
Q ss_pred cCCCCEEEEEecCC----cEEEEEeCCCcEEEEeCCCC
Q 002407 565 GHLDDVLDLSWSKS----QHLLSSSMDKTVRLWHLSSK 598 (927)
Q Consensus 565 gH~~~V~~l~~spd----~~L~Sgs~DgtV~lWDl~t~ 598 (927)
.+...|..+.|+|. ..|+.-..|+++|+||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 34567899999985 67999999999999999753
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.38 E-value=2.5 Score=51.26 Aligned_cols=194 Identities=12% Similarity=0.168 Sum_probs=104.6
Q ss_pred EEEEecCCcEEEEEeCC------CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCc-----EEEEeCCC
Q 002407 571 LDLSWSKSQHLLSSSMD------KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAK-----VRIWSIPE 639 (927)
Q Consensus 571 ~~l~~spd~~L~Sgs~D------gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~-----I~IWDl~t 639 (927)
.+++...+...++|+.| .++..||..+++....-.-...-..+.....++.+.++|+.||. |-.||..+
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC
Confidence 34555566678888888 35888898888755433322111222222227888999999865 66788776
Q ss_pred CcEEEeccCCCcEEEE-EECCCCCEEEEEECCC------eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC
Q 002407 640 RQVVDWNDLHEMVTAA-CYTPDGQGALVGSYKG------SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 640 ~~~v~~~~~~~~V~sl-a~spdg~~l~tgs~Dg------~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
.+--............ ...-+|+..++|+.++ .+..||..++......+.... ..-.+++...
T Consensus 406 ~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~--------R~~~g~a~~~-- 475 (571)
T KOG4441|consen 406 NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR--------RSGFGVAVLN-- 475 (571)
T ss_pred CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc--------cccceEEEEC--
Confidence 6543322222222222 2233688888888554 578899998877655433211 1111233333
Q ss_pred CcEEEEEECCCc-----EEEEECCcceEEEEe-ecCCcceEEEEEecCCCEEEEEECCCc-----EEEEECCCC
Q 002407 713 SSEVLVTSADSR-----IRVVDGIDLVHKFKG-FRNTNSQISASLTANGRYVVSASEDSY-----VYVWKYEAE 775 (927)
Q Consensus 713 ~~~Llsgs~Dg~-----I~VwD~~~~~~~~~~-~~~~~~v~sv~fspdg~~Lasgs~Dg~-----I~IWdl~s~ 775 (927)
..++++|+.|+. |..||.....-.... .........+ ..-+++..+.|+.||. |-.||..+.
T Consensus 476 ~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~-~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 476 GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV-VVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred CEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccE-EEECCEEEEEecccCccccceeEEcCCCCC
Confidence 237777877763 666775433222221 1111111111 2235667777777764 455555443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=93.19 E-value=15 Score=39.82 Aligned_cols=184 Identities=8% Similarity=0.022 Sum_probs=105.9
Q ss_pred EEEEEecCCcE-EEEEeCCC--cEEEEeCCCCcEEEEEecCC--ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 002407 570 VLDLSWSKSQH-LLSSSMDK--TVRLWHLSSKTCLKIFSHSD--YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (927)
Q Consensus 570 V~~l~~spd~~-L~Sgs~Dg--tV~lWDl~t~~~~~~~~h~~--~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~ 644 (927)
...+.|..++. +-+.+.-| .|+.+|+.+++.+....... .--.|+.. +++++.-.=.++...+||..+.+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 45677755544 45666555 69999999999887766333 33345554 34444445567889999999998888
Q ss_pred eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 645 WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
.+.....-..++ .|++.|+.......|+++|..+.+....+.+.... ..-..++.+.|.. |. +.+-.-....
T Consensus 125 ~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g----~pv~~LNELE~i~-G~-IyANVW~td~ 196 (264)
T PF05096_consen 125 TFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG----RPVSNLNELEYIN-GK-IYANVWQTDR 196 (264)
T ss_dssp EEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT----EE---EEEEEEET-TE-EEEEETTSSE
T ss_pred EEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECC----EECCCcEeEEEEc-CE-EEEEeCCCCe
Confidence 777776666777 56888888888889999999988877766553221 2223455666653 21 2222333444
Q ss_pred EEEEECCc--ceEEEEe-------------ecCCcceEEEEEecCCCEEEEEEC
Q 002407 725 IRVVDGID--LVHKFKG-------------FRNTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 725 I~VwD~~~--~~~~~~~-------------~~~~~~v~sv~fspdg~~Lasgs~ 763 (927)
|...|..+ ....+.. .....-...+++.|....|...+.
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 55555322 1111111 011234678999987766555543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.16 E-value=11 Score=40.61 Aligned_cols=155 Identities=16% Similarity=0.151 Sum_probs=87.2
Q ss_pred CEEEEEecCC-cEEEEEe---CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEe-CCCCc--
Q 002407 569 DVLDLSWSKS-QHLLSSS---MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWS-IPERQ-- 641 (927)
Q Consensus 569 ~V~~l~~spd-~~L~Sgs---~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWD-l~t~~-- 641 (927)
.+...+++++ ..++... ....|+++... ...........++.-.|.+ ++...+....+...+++. ..++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 6888999998 4454444 23345555443 3333322334788889999 777776666666667763 33332
Q ss_pred EE--EeccCCCcEEEEEECCCCCEEEEEE---CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEE
Q 002407 642 VV--DWNDLHEMVTAACYTPDGQGALVGS---YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEV 716 (927)
Q Consensus 642 ~v--~~~~~~~~V~sla~spdg~~l~tgs---~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~L 716 (927)
.+ .+......|+.+.++|||..++.-. .++.|.+--+....--....+.............++.+.|.+++. ++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~-L~ 180 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST-LV 180 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE-EE
Confidence 22 2222223899999999999888766 346777765432111100000000111123456899999999886 44
Q ss_pred EEE-ECCCcEEE
Q 002407 717 LVT-SADSRIRV 727 (927)
Q Consensus 717 lsg-s~Dg~I~V 727 (927)
+.+ ..++.+..
T Consensus 181 V~~~~~~~~~~~ 192 (253)
T PF10647_consen 181 VLGRSAGGPVVR 192 (253)
T ss_pred EEeCCCCCceeE
Confidence 444 44443333
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.28 Score=38.39 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=29.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~ 489 (927)
...|.+++|+|...+||.+..||.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 444
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.77 E-value=6.3 Score=47.85 Aligned_cols=186 Identities=14% Similarity=0.184 Sum_probs=102.7
Q ss_pred cEEEEEeCC------CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECC-C-----cEEEEeCCCCcEEE
Q 002407 579 QHLLSSSMD------KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLD-A-----KVRIWSIPERQVVD 644 (927)
Q Consensus 579 ~~L~Sgs~D------gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~D-g-----~I~IWDl~t~~~v~ 644 (927)
..++.|+.+ ..|..+|..+++...... ....-.++++. ++.+.++|+.| | .+..||..+.+-..
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 345666665 358889988886554433 44445566665 57888899998 3 47788888776443
Q ss_pred eccCCCcEEEEE-ECCCCCEEEEEECCCe-----EEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEE
Q 002407 645 WNDLHEMVTAAC-YTPDGQGALVGSYKGS-----CHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (927)
Q Consensus 645 ~~~~~~~V~sla-~spdg~~l~tgs~Dg~-----I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Lls 718 (927)
.......=..+. -.-+|...++|+.||. +..||..+.+....... .....+.....-+..+.++
T Consensus 364 ~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m----------~~~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM----------LTRRSGHGVAVLGGKLYII 433 (571)
T ss_pred cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCC----------CcceeeeEEEEECCEEEEE
Confidence 222222111111 1236888999998864 88899888765544221 1122222222223346777
Q ss_pred EECCC------cEEEEECCcceEEEEeecCCcc-eEEEEEecCCCEEEEEECCCc-----EEEEECCCCCC
Q 002407 719 TSADS------RIRVVDGIDLVHKFKGFRNTNS-QISASLTANGRYVVSASEDSY-----VYVWKYEAESR 777 (927)
Q Consensus 719 gs~Dg------~I~VwD~~~~~~~~~~~~~~~~-v~sv~fspdg~~Lasgs~Dg~-----I~IWdl~s~~~ 777 (927)
|+.++ .+..||..+..-.....-.... -..++ .-++.+.+.|+.|+. |..||..+.+-
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCce
Confidence 77554 4566774432222211111111 11122 236777788887763 67788777543
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=92.64 E-value=24 Score=40.82 Aligned_cols=240 Identities=12% Similarity=0.098 Sum_probs=117.8
Q ss_pred cCCCCeEE----EccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCC-----------cEEE
Q 002407 418 DDSQDVSF----HGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC-----------VIHV 482 (927)
Q Consensus 418 ~d~~~~~~----~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~Dg-----------tVrV 482 (927)
.++..+++ .|.....|++++..++++..- .|..-. -..+.|.+|++.|+....+. .|+.
T Consensus 133 pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d----~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 133 PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD----GIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE----EEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEEEECCCCcCcCC----cccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 44544443 367778899999988854321 222211 12399999998776665433 3788
Q ss_pred EecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCC-----
Q 002407 483 WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD----- 557 (927)
Q Consensus 483 Wdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~----- 557 (927)
|.+.+......+.-...... .....+..++++.++........-. . ...+.++..
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~-~~~~~~~~s~d~~~l~i~~~~~~~~-------s------------~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEP-FWFVSVSRSKDGRYLFISSSSGTSE-------S------------EVYLLDLDDGGSPD 266 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCT-TSEEEEEE-TTSSEEEEEEESSSSE-------E------------EEEEEECCCTTTSS
T ss_pred EECCCChHhCeeEEeecCCC-cEEEEEEecCcccEEEEEEEccccC-------C------------eEEEEeccccCCCc
Confidence 88877654423321111111 1255667778877665432222110 0 001112211
Q ss_pred CceEEEccCCCCE-EEEEecCCcEEEEEe---CCCcEEEEeCCCCcE---E-EEEecCCc--eEEEEEccCCCCEEEEEE
Q 002407 558 KPICSFQGHLDDV-LDLSWSKSQHLLSSS---MDKTVRLWHLSSKTC---L-KIFSHSDY--VTCIQFNPVDDRYFISGS 627 (927)
Q Consensus 558 k~i~~l~gH~~~V-~~l~~spd~~L~Sgs---~DgtV~lWDl~t~~~---~-~~~~h~~~--V~~v~fsp~dg~~L~sgs 627 (927)
.....+..+...+ ..+....+.+++... ..+.|...++..... . ..+.+... +..+... .+.+++...
T Consensus 267 ~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~ 344 (414)
T PF02897_consen 267 AKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYR 344 (414)
T ss_dssp -SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEE
T ss_pred CCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEE
Confidence 1223333333333 334444333333332 235576777776652 2 34446654 4444443 344555555
Q ss_pred CCCc--EEEEeCC-CCcEEEecc-CCCcEEEEEECCCCCEEEEEEC----CCeEEEEECCCCeeee
Q 002407 628 LDAK--VRIWSIP-ERQVVDWND-LHEMVTAACYTPDGQGALVGSY----KGSCHLYNTSENKLQQ 685 (927)
Q Consensus 628 ~Dg~--I~IWDl~-t~~~v~~~~-~~~~V~sla~spdg~~l~tgs~----Dg~I~IwDl~~~~~~~ 685 (927)
.++. |+++++. +........ ....|..+...+++..+..... -++++.||+.+++...
T Consensus 345 ~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 345 ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 5554 8899998 444433322 2344566665566655444322 2578889998887654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.54 E-value=1.2 Score=55.28 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=72.3
Q ss_pred cEEEEEeCCCcEEEEeCCCCcE--EEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC----CcE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTC--LKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH----EMV 652 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~--~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~----~~V 652 (927)
..++.|+.-|.|-..|+...-+ .+--....+|++++|+. ++.+++.|-.+|.|.+||+..+++++.+... ..+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 4577888888888888776422 11122568999999998 9999999999999999999998877644322 355
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECC
Q 002407 653 TAACYTPDGQGALVGSYKGSCHLYNTS 679 (927)
Q Consensus 653 ~sla~spdg~~l~tgs~Dg~I~IwDl~ 679 (927)
..+.+..++..++++...|. +|.+.
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 56666677777888887776 55543
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=3.6 Score=49.53 Aligned_cols=104 Identities=14% Similarity=0.196 Sum_probs=56.7
Q ss_pred CcEEEEEeCCC------cEEEEeCCCCcEEEEEec--C-CceEEEEEccCCCCEEEEEECCC-----cEEEEeCCCCcEE
Q 002407 578 SQHLLSSSMDK------TVRLWHLSSKTCLKIFSH--S-DYVTCIQFNPVDDRYFISGSLDA-----KVRIWSIPERQVV 643 (927)
Q Consensus 578 d~~L~Sgs~Dg------tV~lWDl~t~~~~~~~~h--~-~~V~~v~fsp~dg~~L~sgs~Dg-----~I~IWDl~t~~~v 643 (927)
+..++.|+.++ .+..||..+.+....-.. . .....+.+ ++.+++.|+.++ .+..||..+.+-.
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 34556665432 577888887765432221 1 11222222 677788887652 4777888776544
Q ss_pred EeccCCC--cEEEEEECCCCCEEEEEECC------CeEEEEECCCCeeee
Q 002407 644 DWNDLHE--MVTAACYTPDGQGALVGSYK------GSCHLYNTSENKLQQ 685 (927)
Q Consensus 644 ~~~~~~~--~V~sla~spdg~~l~tgs~D------g~I~IwDl~~~~~~~ 685 (927)
.....+. .-.+++ .-+++.++.|+.+ ..+..||+.+++...
T Consensus 372 ~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 372 EEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred eCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 3222211 111122 2356777777632 458899998876544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.90 E-value=3.4 Score=49.81 Aligned_cols=242 Identities=13% Similarity=0.119 Sum_probs=119.6
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-
Q 002407 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW- 645 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~- 645 (927)
+...++..+|.+..-.-+.--.|+|+++. |+.+..+. ....+..+.|+. ...|++...+|++++|++-.......
T Consensus 44 gGpIAV~r~p~~~~~~~~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge~ie~~s 120 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLYSARPYIRIFNIS-GQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLGEFIESNS 120 (829)
T ss_pred CCceEEEecccccccccccceeEEEEecc-ccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecchhhhcccc
Confidence 34455666664321111444568888875 44444433 334888999985 55677888999999999865433221
Q ss_pred c---cCCCcEEEEEECCCCCEEEEEECCCeEEEEE-CCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc-EEEEEE
Q 002407 646 N---DLHEMVTAACYTPDGQGALVGSYKGSCHLYN-TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS-EVLVTS 720 (927)
Q Consensus 646 ~---~~~~~V~sla~spdg~~l~tgs~Dg~I~IwD-l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~-~Llsgs 720 (927)
. .....|..+-+..+| +++-..+|.+.+-+ ..... ....+ .. ....-.-+|-...+++.. .++..-
T Consensus 121 vg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~-~~~~~-di-----P~~~~~~~~Wt~~~~~~~~~~ll~v 191 (829)
T KOG2280|consen 121 VGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPK-LRKMP-DI-----PYNELPKSCWTVFQPHRQSTILLDV 191 (829)
T ss_pred cccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcch-hhhCC-CC-----CCccCCCcceeEecCCCcceeEEee
Confidence 1 111234444444455 44444456554433 22211 11111 00 111111123322222211 111110
Q ss_pred CCCcE-EEEECCc-ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccc-cceeeeeeeecCCC
Q 002407 721 ADSRI-RVVDGID-LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKS-ITVTHSYEHFHCQD 797 (927)
Q Consensus 721 ~Dg~I-~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~-~~~~~~~~~~~~~~ 797 (927)
.--.+ .++-... ..+..........+..+++||+.++|+--...|.|.+-.++.....-.... ......-..+..++
T Consensus 192 ~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 192 DVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred chhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 00000 1111111 111111111235678899999999999999999999888776543322210 11111123343333
Q ss_pred eEEEEecCCceeEEeecCCceeecc
Q 002407 798 VSVAIPWPGVGDTWGLQDTYLDEFS 822 (927)
Q Consensus 798 v~vavs~~g~~~i~~~~d~~i~~~~ 822 (927)
+++++|.....+++..+..+..+.
T Consensus 272 -aVvl~~e~~l~lvgp~gd~V~f~y 295 (829)
T KOG2280|consen 272 -AVVLSWEVNLMLVGPPGDSVQFYY 295 (829)
T ss_pred -ceEEEEeeeEEEEcCCCCcccccc
Confidence 667788888878777666665554
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.67 E-value=2.5 Score=52.97 Aligned_cols=138 Identities=15% Similarity=0.160 Sum_probs=90.0
Q ss_pred EEEEEecCC---cEEEEEeCCCcEEEEeCCCCcE--------EEEE----ecCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 570 VLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTC--------LKIF----SHSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 570 V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~~--------~~~~----~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
|..+...+| ..++..+.+-.|..||+.+-.. ++.- .....+.++.|+|.-....+.+..|+.|++
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 344444455 2344455566799999875321 1111 133456789999955666778888999998
Q ss_pred EeCCCCc-EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 635 WSIPERQ-VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 635 WDl~t~~-~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
..+.... .+..+......++++|+|.|+.+++|-..|++.-|-..-. ....+. ... ......|.+|+|.....
T Consensus 183 ~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip--~Pp---~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 183 KSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIP--EPP---VEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeeccc--CCC---cCCCcceeEEEEeccee
Confidence 8775433 2334566678999999999999999999999998876432 111111 110 12267899999987654
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=90.80 E-value=4.9 Score=48.72 Aligned_cols=112 Identities=13% Similarity=0.165 Sum_probs=74.8
Q ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc--CCCCcEEEEEECCCcEEEE
Q 002407 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA--PGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs--pdg~~~Llsgs~Dg~I~Vw 728 (927)
.+.-+.-+.-++..++-.....+.|||.+.+.+.....+ .....|..+.|. |++. .+++.+....|.+|
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--------~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~ 101 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--------SEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLY 101 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--------cCCCceeeceeeecCCCC-EEEEEEcCcEEEEE
Confidence 444455555666666665666799999999886655432 456788888875 5665 68888888889888
Q ss_pred EC-----------CcceEEEEeecC-CcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 729 DG-----------IDLVHKFKGFRN-TNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 729 D~-----------~~~~~~~~~~~~-~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
-. ...+..+....+ ..+|.+.+|.++|.+++.++ +.++|++-.
T Consensus 102 ~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 102 TQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred EccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 51 122333333222 25688899999997776653 468888653
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.88 Score=35.59 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=30.0
Q ss_pred ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Q 002407 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (927)
Q Consensus 646 ~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~ 679 (927)
......|..++|+|...+||+++.+|.|.+|.+.
T Consensus 8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3445679999999999999999999999999983
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.71 E-value=1 Score=55.88 Aligned_cols=99 Identities=15% Similarity=0.208 Sum_probs=71.0
Q ss_pred CCCEEEEEECCCcEEEEeCCCCc--EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccc
Q 002407 619 DDRYFISGSLDAKVRIWSIPERQ--VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKK 696 (927)
Q Consensus 619 dg~~L~sgs~Dg~I~IWDl~t~~--~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~ 696 (927)
-+-.++.|+..|.|...|+...- ..+-.....+|++++|+.+|..++.|-.+|.|.+||+..++..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-------- 169 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-------- 169 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee--------
Confidence 34568888888999998887632 12333445799999999999999999999999999999988877764
Q ss_pred cCCCCCeEEE---EEcCCCCcEEEEEECCCcEEEEE
Q 002407 697 RSHQRKITGF---QFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 697 ~~h~~~Vtsl---~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
.+..+.+++ .+..++. .++++...|. +|.
T Consensus 170 -e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 170 -EHGAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWK 201 (1206)
T ss_pred -ecCCccceEEEEEEeCCCc-EEEEccCCCc--eEE
Confidence 333333333 3334444 6777777776 554
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.52 E-value=30 Score=37.78 Aligned_cols=164 Identities=16% Similarity=0.200 Sum_probs=101.2
Q ss_pred EEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE---EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEE
Q 002407 600 CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV---VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676 (927)
Q Consensus 600 ~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~---v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~Iw 676 (927)
.+..+...+-+..+.|+ +++...+..+.-++|.|+.+... +........-.++. -.|+++.++..+.-+.++
T Consensus 79 l~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLiv 153 (370)
T COG5276 79 LLSVINARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIV 153 (370)
T ss_pred eEEEEehhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEE
Confidence 34444566777888885 46788888888899999987543 33333333344444 458899998877778888
Q ss_pred ECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ceEEEEeecCCc-ceEEEEEecC
Q 002407 677 NTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-LVHKFKGFRNTN-SQISASLTAN 754 (927)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~~~~~~~-~v~sv~fspd 754 (927)
|+.+.......- +.......-..++.+- + .-..+..|+-+.|.|... ...++.++.+.. .+.++..+++
T Consensus 154 dvsdpssP~lag------rya~~~~d~~~v~ISG--n-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn 224 (370)
T COG5276 154 DVSDPSSPQLAG------RYALPGGDTHDVAISG--N-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN 224 (370)
T ss_pred ECCCCCCceeee------eeccCCCCceeEEEec--C-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC
Confidence 887654322110 0012222334555554 2 566677888899999543 344555555555 5667777766
Q ss_pred CCEEEEEECCCcEEEEECCCCCCcc
Q 002407 755 GRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 755 g~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
--+++.. +--+.+-|..+.+.+.
T Consensus 225 r~y~vvy--~egvlivd~s~~ssp~ 247 (370)
T COG5276 225 RAYLVVY--DEGVLIVDVSGPSSPT 247 (370)
T ss_pred eeEEEEc--ccceEEEecCCCCCce
Confidence 5555544 3457788887766543
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.50 E-value=35 Score=38.50 Aligned_cols=154 Identities=11% Similarity=0.136 Sum_probs=84.2
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEE-EeCCCCc-EEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRI-WSIPERQ-VVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~I-WDl~t~~-~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~ 683 (927)
...+.++.+.| ++.+++++ ..|.+.. ++ ..++ -.. .......++.+.+.+++..++++ ..|.+++=....+..
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688999998 77655544 4565443 22 2222 211 22334678999999999877765 457665323444443
Q ss_pred eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE-ECCcceEEEEe-ecCCcceEEEEEecCCCEEEEE
Q 002407 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV-DGIDLVHKFKG-FRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw-D~~~~~~~~~~-~~~~~~v~sv~fspdg~~Lasg 761 (927)
....... .......++.+.+.+++. +++++.+|.|..- |...--..... .........+.|..+++.+++
T Consensus 248 W~~~~~~-----~~~~~~~l~~v~~~~~~~--~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~- 319 (334)
T PRK13684 248 WSKPIIP-----EITNGYGYLDLAYRTPGE--IWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL- 319 (334)
T ss_pred cccccCC-----ccccccceeeEEEcCCCC--EEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-
Confidence 2221110 011234578889998664 5666677766542 22111111111 111234667777777666554
Q ss_pred ECCCcEEEEEC
Q 002407 762 SEDSYVYVWKY 772 (927)
Q Consensus 762 s~Dg~I~IWdl 772 (927)
+..|.|..|+-
T Consensus 320 G~~G~il~~~~ 330 (334)
T PRK13684 320 GQRGVLLRYVG 330 (334)
T ss_pred CCCceEEEecC
Confidence 56788887753
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=90.05 E-value=7.2 Score=46.09 Aligned_cols=154 Identities=13% Similarity=0.140 Sum_probs=82.3
Q ss_pred CceEEEEEccCCCCEEEEEE---CCCcEEEEeCCCCcEEEeccCCCcEEEEEECCC----CCEEEEEECCCeEEEEECCC
Q 002407 608 DYVTCIQFNPVDDRYFISGS---LDAKVRIWSIPERQVVDWNDLHEMVTAACYTPD----GQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs---~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spd----g~~l~tgs~Dg~I~IwDl~~ 680 (927)
.+|..++|. ||+.++-.. ..|.+++=| .. .++.-+.|..++|.|- -..+++.-....|.+|.+..
T Consensus 20 HPvhGlaWT--DGkqVvLT~L~l~~gE~kfGd---s~---viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT--DGKQVVLTDLQLHNGEPKFGD---SK---VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec--CCCEEEEEeeeeeCCccccCC---cc---EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 578889997 565544322 122222211 11 2223356888999984 33566667788999999863
Q ss_pred C-----eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ceEEEEeecCCcceEEEEEecC
Q 002407 681 N-----KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-LVHKFKGFRNTNSQISASLTAN 754 (927)
Q Consensus 681 ~-----~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspd 754 (927)
. +......-++. ....---.++.|+|... .|++-.....-.+++... ....-......+.|.+.||.+|
T Consensus 92 s~~e~~K~l~sQtcEi~----e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~D 166 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIR----EPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKD 166 (671)
T ss_pred Cccccccceeeeeeecc----CCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCc
Confidence 2 22211110000 01111224677999876 444433333323333221 1111112245678999999999
Q ss_pred CCEEEEEE-CCCcEEEEECCC
Q 002407 755 GRYVVSAS-EDSYVYVWKYEA 774 (927)
Q Consensus 755 g~~Lasgs-~Dg~I~IWdl~s 774 (927)
|+.|+.+- ..=.-||||-..
T Consensus 167 G~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CCEEEEEeCCeEEEEEecCch
Confidence 99887663 334578898654
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.70 E-value=4 Score=51.30 Aligned_cols=125 Identities=15% Similarity=0.117 Sum_probs=83.2
Q ss_pred cEEEEEECCCCCEEEEEECC--CeEEEEECCCCeeeeecc-ccccc-ccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 651 MVTAACYTPDGQGALVGSYK--GSCHLYNTSENKLQQKSP-INLQN-KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~D--g~I~IwDl~~~~~~~~~~-i~~~~-~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
.+..+...+|+...++.... -.|..||++........+ ..+.. +..........++.|.|.-....++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 55566667777665554333 379999998654332111 00100 111233345678889997766788889999999
Q ss_pred EEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 727 VVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 727 VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|..+...........-...+++++|+|.|+.++.|-..|++.-|...-.
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE 230 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc
Confidence 9875544443333445667899999999999999999999999876554
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=89.59 E-value=11 Score=42.95 Aligned_cols=98 Identities=7% Similarity=0.023 Sum_probs=55.9
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCCC-----cEEEE---Eec-----CCceEEEEEccCCCCEEEEEECC------
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSK-----TCLKI---FSH-----SDYVTCIQFNPVDDRYFISGSLD------ 629 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~-----~~~~~---~~h-----~~~V~~v~fsp~dg~~L~sgs~D------ 629 (927)
....|++.+++ |+.+.....+++.|.... +.... +.. ......++|.| ++.+.++-+..
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec
Confidence 34667777778 555555544444454321 21111 221 34477899999 88776654421
Q ss_pred -------------CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEE
Q 002407 630 -------------AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGS 668 (927)
Q Consensus 630 -------------g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs 668 (927)
|.|.-++..+++...+.........++|+|+|+++++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 345555665555444433344567889999888776543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.56 E-value=15 Score=44.60 Aligned_cols=95 Identities=14% Similarity=0.175 Sum_probs=52.4
Q ss_pred cEEEEeCCCCcEEEEEecCCc--eEEEEEccCCCCEEEEEECC------CcEEEEeCCCCcEEEeccCCCcE-EEEEECC
Q 002407 589 TVRLWHLSSKTCLKIFSHSDY--VTCIQFNPVDDRYFISGSLD------AKVRIWSIPERQVVDWNDLHEMV-TAACYTP 659 (927)
Q Consensus 589 tV~lWDl~t~~~~~~~~h~~~--V~~v~fsp~dg~~L~sgs~D------g~I~IWDl~t~~~v~~~~~~~~V-~sla~sp 659 (927)
.+..||..+++....-....+ -.+++.. ++.+++.|+.+ ..+..||..+..-.........- ...+..-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 466778777654432221111 1223332 67777787754 24778888776543332222111 1112233
Q ss_pred CCCEEEEEECCC-----eEEEEECCCCeeee
Q 002407 660 DGQGALVGSYKG-----SCHLYNTSENKLQQ 685 (927)
Q Consensus 660 dg~~l~tgs~Dg-----~I~IwDl~~~~~~~ 685 (927)
+|+..++|+.++ .+..||..+.....
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 678888888754 48899998876544
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.44 E-value=22 Score=37.55 Aligned_cols=189 Identities=10% Similarity=0.051 Sum_probs=100.6
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCC---CEEEEEECCCcEEEEeCCCC--cEEEe-c-----cC
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDD---RYFISGSLDAKVRIWSIPER--QVVDW-N-----DL 648 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg---~~L~sgs~Dg~I~IWDl~t~--~~v~~-~-----~~ 648 (927)
++..-=..+.|.-||+.+.+..+.--...++..+.+ |..+ .+.+.++..-.|--||.... .+... + ..
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k 107 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK 107 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecCcceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence 344444566777799887654433222222333333 2122 22333333223444663222 22211 1 11
Q ss_pred CCcEEEEEECCCCCEEEEEECC----------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEE
Q 002407 649 HEMVTAACYTPDGQGALVGSYK----------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (927)
Q Consensus 649 ~~~V~sla~spdg~~l~tgs~D----------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Lls 718 (927)
+...+....+|+|++ ..|.+. |.++.|-....-... ...-.--+.++|+.+.+.+.++
T Consensus 108 knR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i-----------~~~v~IsNgl~Wd~d~K~fY~i 175 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELI-----------WNCVGISNGLAWDSDAKKFYYI 175 (310)
T ss_pred hcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceee-----------ehhccCCccccccccCcEEEEE
Confidence 345667778999998 444432 344444332211110 1233344678899887777788
Q ss_pred EECCCcEEEEEC-------CcceEEEEeec----CCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccc
Q 002407 719 TSADSRIRVVDG-------IDLVHKFKGFR----NTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRS 781 (927)
Q Consensus 719 gs~Dg~I~VwD~-------~~~~~~~~~~~----~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~ 781 (927)
-+.+-.|.-||. .+....+.... .....-.+++..+|++.++.-..++|...|..+++.+...
T Consensus 176 Dsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~ei 249 (310)
T KOG4499|consen 176 DSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEI 249 (310)
T ss_pred ccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEE
Confidence 888888988881 11122222211 1111124566778888888888999999999998876544
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.25 E-value=0.86 Score=47.51 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=59.6
Q ss_pred cEEEEEeCCCcEEEEeCCCC-cEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCC--cEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSK-TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE--MVTA 654 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~-~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~--~V~s 654 (927)
..++.|+.+|.|.+|+.... .....+. ....|.++--.-.++.+..+++.||.|+.|++.-.+.+....++. .+..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 57999999999999988721 1111111 223333333222255689999999999999998888776655543 3333
Q ss_pred EEECCCCCEEEEE--ECCCeEEEEECC
Q 002407 655 ACYTPDGQGALVG--SYKGSCHLYNTS 679 (927)
Q Consensus 655 la~spdg~~l~tg--s~Dg~I~IwDl~ 679 (927)
+..+..+..++.+ +.+..++.|++.
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchh
Confidence 3333333444444 444445555443
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=89.08 E-value=17 Score=39.19 Aligned_cols=149 Identities=14% Similarity=0.113 Sum_probs=87.1
Q ss_pred ceEEEEEccCCCCEEEEEE---CCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEE-CCCCeee
Q 002407 609 YVTCIQFNPVDDRYFISGS---LDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYN-TSENKLQ 684 (927)
Q Consensus 609 ~V~~v~fsp~dg~~L~sgs---~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwD-l~~~~~~ 684 (927)
.+...++++ ++..++... ....|+++....... ... ....++...|++++...++...+...+++. ...+...
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~-~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVR-PVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcce-eec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999 888776655 223355554433222 222 334788899999987777766666666663 3333222
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEE--CCCcEEEEE----CCc----ceEEEEee-cCCcceEEEEEec
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS--ADSRIRVVD----GID----LVHKFKGF-RNTNSQISASLTA 753 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs--~Dg~I~VwD----~~~----~~~~~~~~-~~~~~v~sv~fsp 753 (927)
.. .+.. ......|+.+.++|||.++.++.. .++.|.|-- ... +....... .....+..+.|.+
T Consensus 102 ~~-~v~~-----~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 102 PV-EVDW-----PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred eE-Eecc-----cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 11 1110 111128999999999986555553 346666653 111 11111111 2245688999999
Q ss_pred CCCEEEEEECCCc
Q 002407 754 NGRYVVSASEDSY 766 (927)
Q Consensus 754 dg~~Lasgs~Dg~ 766 (927)
++.+++.+...+.
T Consensus 176 ~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 176 DSTLVVLGRSAGG 188 (253)
T ss_pred CCEEEEEeCCCCC
Confidence 9988877765443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=89.05 E-value=44 Score=37.60 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=37.6
Q ss_pred CCCeEEEEEcCCCC------cEEEEEECCCcEEEEECC---cceEEEEeec-CCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 700 QRKITGFQFAPGSS------SEVLVTSADSRIRVVDGI---DLVHKFKGFR-NTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 700 ~~~Vtsl~fspdg~------~~Llsgs~Dg~I~VwD~~---~~~~~~~~~~-~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
...++.+.|..... .++++.-..+.|...... .......... ....+..+++.|||.+.++-..+|.|+
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 35677777765321 134444445566666532 1111112122 233688999999999988888888875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=88.13 E-value=58 Score=37.84 Aligned_cols=41 Identities=15% Similarity=0.042 Sum_probs=32.7
Q ss_pred cceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccccccc
Q 002407 744 NSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSI 784 (927)
Q Consensus 744 ~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~ 784 (927)
..+.+++.+|++++.|+...=|.|.++|+.++....--|+.
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGY 348 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGY 348 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccC
Confidence 44678899999999999888899999999987655444443
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=88.08 E-value=15 Score=35.45 Aligned_cols=104 Identities=10% Similarity=0.150 Sum_probs=72.9
Q ss_pred cEEEEEeCCCcEEEEeCCC--------CcEEEEEecCCceEEEEEccC----CCCEEEEEECCCcEEEEeCCCCcEEEec
Q 002407 579 QHLLSSSMDKTVRLWHLSS--------KTCLKIFSHSDYVTCIQFNPV----DDRYFISGSLDAKVRIWSIPERQVVDWN 646 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t--------~~~~~~~~h~~~V~~v~fsp~----dg~~L~sgs~Dg~I~IWDl~t~~~v~~~ 646 (927)
..|+.++.-+.|.|++... ...+..+.....|++|+-.+. ....|+.|+. ..|..||+....-+...
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyk 89 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYK 89 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhh
Confidence 4578888889999998763 345667778888999876553 3556776664 67999999988877778
Q ss_pred cCCCcEEEEEECC----CCCEEEEEECCCeEEEEECCCCeee
Q 002407 647 DLHEMVTAACYTP----DGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 647 ~~~~~V~sla~sp----dg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
+.++.+.++.+-. ...++++| .+..|.-||....+..
T Consensus 90 e~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 90 EVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIF 130 (136)
T ss_pred hCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEE
Confidence 8888898888743 33445554 3556666666554443
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.74 E-value=0.052 Score=65.32 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=21.5
Q ss_pred eecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecC
Q 002407 452 IQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVV 486 (927)
Q Consensus 452 L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~ 486 (927)
++|..|.|-.+.|-. +-..++ -.=|.+.||++.
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd 161 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVD 161 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehH
Confidence 367888899999954 222222 334678899876
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.41 E-value=19 Score=42.84 Aligned_cols=106 Identities=11% Similarity=0.085 Sum_probs=58.2
Q ss_pred cEEEEEeCC-----CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCC--cEEEEeCCCCcEEEeccCC
Q 002407 579 QHLLSSSMD-----KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDA--KVRIWSIPERQVVDWNDLH 649 (927)
Q Consensus 579 ~~L~Sgs~D-----gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg--~I~IWDl~t~~~v~~~~~~ 649 (927)
..++.|+.+ .++..||..++.....-. ....-.+++. - ++.+.+.|+.++ .+..||..+.+-.......
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-E-CCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 345666644 357778888766544332 1111112222 2 677777887643 5778887766544433332
Q ss_pred CcE-EEEEECCCCCEEEEEECCC---eEEEEECCCCeeeee
Q 002407 650 EMV-TAACYTPDGQGALVGSYKG---SCHLYNTSENKLQQK 686 (927)
Q Consensus 650 ~~V-~sla~spdg~~l~tgs~Dg---~I~IwDl~~~~~~~~ 686 (927)
... ...+..-+|+..++|+.++ .+..||..+......
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~ 391 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG 391 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC
Confidence 211 1122233677888887653 477899887765543
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=87.38 E-value=1.8 Score=33.07 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=26.9
Q ss_pred CCEEEEEEcCCC---CEEEEEeCCCcEEEEecCcC
Q 002407 457 GSIWSIKFSLDG---RYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 457 ~~I~~vafSpdG---~~LaSgs~DgtVrVWdv~~~ 488 (927)
|+|.+|+|||+. .+||.+-.-+.|.|+|+.+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 579999999854 48888888899999999853
|
It contains a characteristic DLL sequence motif. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=87.20 E-value=20 Score=42.53 Aligned_cols=149 Identities=13% Similarity=0.194 Sum_probs=91.4
Q ss_pred CCEEEEEecCC-cEEEEEe--CCCcEEEEeCCCCcEEEEEecCCceEEEEEccC---CCCEEEEEECCCcEEEEeCCC--
Q 002407 568 DDVLDLSWSKS-QHLLSSS--MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPV---DDRYFISGSLDAKVRIWSIPE-- 639 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs--~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~---dg~~L~sgs~Dg~I~IWDl~t-- 639 (927)
.+|..++|... ..++|.- ..|.+++=| ...+..| ..|..+.|.|. +-..|++......|.||-+--
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 46788999765 3444442 233333322 1233333 34788999883 122455566678899998742
Q ss_pred ---CcEEE--eccCCC----cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 640 ---RQVVD--WNDLHE----MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 640 ---~~~v~--~~~~~~----~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
.+.+. .....+ -...+.|+|....|++-+....-.+++++......+.. ....+.|.|.+|.+
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD--------i~~~G~IhCACWT~ 165 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD--------IKTSGLIHCACWTK 165 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEe--------ccCCceEEEEEecC
Confidence 22221 112211 23456799999888887766665667765433322222 25667899999999
Q ss_pred CCCcEEEEEECCCcEEEEEC
Q 002407 711 GSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~VwD~ 730 (927)
||.+++++.+..=.-+|||.
T Consensus 166 DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cCCEEEEEeCCeEEEEEecC
Confidence 99977776677667889993
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=86.81 E-value=45 Score=36.79 Aligned_cols=113 Identities=10% Similarity=0.134 Sum_probs=65.8
Q ss_pred eEEEEEccCCCCEEEEEECCCcEEEEeCC------CC-cEEEecc------CCCcEEEEEECCCCC------------EE
Q 002407 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIP------ER-QVVDWND------LHEMVTAACYTPDGQ------------GA 664 (927)
Q Consensus 610 V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~------t~-~~v~~~~------~~~~V~sla~spdg~------------~l 664 (927)
-+.|+|+| .+.+-++...-+...+||.. .. .++..+. .+...+.+.|+.... .+
T Consensus 25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 57899999 77777777777889999986 12 2222222 124567777764332 26
Q ss_pred EEEECCCeEEEEECCCCee---eeecccccccccccCC-CCCeEEEEEcCC--CCcEEEEEECCCcEEEEE
Q 002407 665 LVGSYKGSCHLYNTSENKL---QQKSPINLQNKKKRSH-QRKITGFQFAPG--SSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 665 ~tgs~Dg~I~IwDl~~~~~---~~~~~i~~~~~~~~~h-~~~Vtsl~fspd--g~~~Llsgs~Dg~I~VwD 729 (927)
+.++++|+|.-|...-... .....+. ... ...-..+++... +..+.++--..++|.|||
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d------~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd 168 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVD------ASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK 168 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEc------cCCCcceeeeeEEeecCCCceEEEeccCCCceEEec
Confidence 7788999999998543322 1111110 111 222334555532 343444445678888888
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=86.45 E-value=97 Score=38.66 Aligned_cols=192 Identities=7% Similarity=0.032 Sum_probs=86.3
Q ss_pred EEEecCC-cEEE-EEeCC-----CcEEEEeCCCC--cEEEEEe-cCCceEEEEEccCCCCEEEEEEC---CCcEEEEeC-
Q 002407 572 DLSWSKS-QHLL-SSSMD-----KTVRLWHLSSK--TCLKIFS-HSDYVTCIQFNPVDDRYFISGSL---DAKVRIWSI- 637 (927)
Q Consensus 572 ~l~~spd-~~L~-Sgs~D-----gtV~lWDl~t~--~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~---Dg~I~IWDl- 637 (927)
.++|.++ +.|+ +...+ ..|+.+++.++ +-..++. ......-..+.+.++++++..+. ++.+.+|+.
T Consensus 176 ~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 176 SFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 3677766 3333 33222 36888888887 4444454 22223212232326776655443 346888884
Q ss_pred -CCCcEEEeccCC-CcEEEEEECCCCCEEEEEECC----CeEEEEECCC-CeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 638 -PERQVVDWNDLH-EMVTAACYTPDGQGALVGSYK----GSCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 638 -~t~~~v~~~~~~-~~V~sla~spdg~~l~tgs~D----g~I~IwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
.++......... .....+. +.. ..|..-+.. ..|...++.. ++....+. ......|..+.+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~--------~~~~~~i~~~~~~~ 325 (686)
T PRK10115 256 LADAEPFVFLPRRKDHEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIP--------PRENIMLEGFTLFT 325 (686)
T ss_pred CCCCCceEEEECCCCCEEEEE-eCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEEC--------CCCCCEEEEEEEEC
Confidence 334322222222 2222222 222 334443332 2343344432 11111100 11234678888873
Q ss_pred CCCcEEEEEECCCcEEEE--ECCc-ceEEEEeecCCcceEEEEEe--cCC-CEEEEEE---CCCcEEEEECCCCC
Q 002407 711 GSSSEVLVTSADSRIRVV--DGID-LVHKFKGFRNTNSQISASLT--ANG-RYVVSAS---EDSYVYVWKYEAES 776 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~Vw--D~~~-~~~~~~~~~~~~~v~sv~fs--pdg-~~Lasgs---~Dg~I~IWdl~s~~ 776 (927)
..++++...++.-+++ +... ....+.. .....+..+.++ +++ .++++.+ .-+.++.||+.++.
T Consensus 326 --~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 326 --DWLVVEERQRGLTSLRQINRKTREVIGIAF-DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred --CEEEEEEEeCCEEEEEEEcCCCCceEEecC-CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 3466666767665554 4321 2222221 111222223344 333 3444443 34668888887753
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=86.20 E-value=18 Score=41.31 Aligned_cols=150 Identities=9% Similarity=0.076 Sum_probs=75.2
Q ss_pred CceEEEEEccCCCCEEEEEE-----------CCC-cEEEEeCCC--CcE---EEeccCCCcEEEEEECCCCCEEEEEECC
Q 002407 608 DYVTCIQFNPVDDRYFISGS-----------LDA-KVRIWSIPE--RQV---VDWNDLHEMVTAACYTPDGQGALVGSYK 670 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs-----------~Dg-~I~IWDl~t--~~~---v~~~~~~~~V~sla~spdg~~l~tgs~D 670 (927)
.....|+|.+ +++++++-. ..+ .|.+++-.+ ++. ..+...-.....+++.++| |+++...
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 4466788988 888776643 123 677775432 322 2233333456889999988 4444444
Q ss_pred CeEEEEECCCCeee----eecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC------------------CCcEEEE
Q 002407 671 GSCHLYNTSENKLQ----QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA------------------DSRIRVV 728 (927)
Q Consensus 671 g~I~IwDl~~~~~~----~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~------------------Dg~I~Vw 728 (927)
...++.|....... ..+...+.. ....+......++|.|+|..++..++. .+.|.-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~-~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGG-QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCC-CCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 33334455321100 000000000 001124557889999998633333321 0345555
Q ss_pred ECCcceEEEEeecCCcceEEEEEecCCCEEEEEE
Q 002407 729 DGIDLVHKFKGFRNTNSQISASLTANGRYVVSAS 762 (927)
Q Consensus 729 D~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs 762 (927)
+........... .......++|+++|+++++-.
T Consensus 170 ~pdg~~~e~~a~-G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKLRVVAH-GFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ecCCCeEEEEec-CcCCCccceECCCCCEEEEcc
Confidence 533211111111 223346789999998877644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=85.77 E-value=77 Score=36.88 Aligned_cols=60 Identities=12% Similarity=0.184 Sum_probs=46.1
Q ss_pred CCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Q 002407 620 DRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (927)
Q Consensus 620 g~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~ 679 (927)
..+|++-+.||.+.+|+-+.-........---...++|.+.-..|++++.+..+..|...
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 467888999999999997665544444444455668889988899999998888888753
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=85.22 E-value=19 Score=43.90 Aligned_cols=116 Identities=17% Similarity=0.245 Sum_probs=69.8
Q ss_pred eEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec--cCCCcEEEEEEC--CCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--DLHEMVTAACYT--PDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 610 V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~--~~~~~V~sla~s--pdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
++-+.-+. -++.-++-+....+.|||...+.+.... ...+.|..+.|. |+++.+++.+-.+.|.+|--.......
T Consensus 32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 33344443 3444444344456999999988765433 447889999885 689999998899999998642111000
Q ss_pred ecc--cccccccccCCC-CCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 686 KSP--INLQNKKKRSHQ-RKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 686 ~~~--i~~~~~~~~~h~-~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
..+ ..+.......++ .+|.+..|.++|. ++++ .++++.|+|
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~--LvV~-sGNqlfv~d 154 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGT--LVVG-SGNQLFVFD 154 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCe--EEEE-eCCEEEEEC
Confidence 000 000111112333 6789999999883 4444 366788887
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=84.93 E-value=69 Score=35.60 Aligned_cols=182 Identities=10% Similarity=0.074 Sum_probs=86.3
Q ss_pred EEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE--E
Q 002407 570 VLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV--V 643 (927)
Q Consensus 570 V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~----h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~--v 643 (927)
...|.|..+..+++| ..+ +.+...+.++.-..+. .......+.... ++. +...+..|.|..= .+.++- .
T Consensus 64 l~~I~f~~~~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~-~~l~~~~G~iy~T-~DgG~tW~~ 138 (302)
T PF14870_consen 64 LNSISFDGNEGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGS-AELAGDRGAIYRT-TDGGKTWQA 138 (302)
T ss_dssp EEEEEEETTEEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTE-EEEEETT--EEEE-SSTTSSEEE
T ss_pred EEEEEecCCceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCc-EEEEcCCCcEEEe-CCCCCCeeE
Confidence 456777655434444 344 3444444454333332 223334444444 343 3334445554322 222321 1
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC
Q 002407 644 DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (927)
Q Consensus 644 ~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg 723 (927)
........+..+..++||++++++..-....-||.-........ +....+|..|.|.|++. |......|
T Consensus 139 ~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~---------r~~~~riq~~gf~~~~~--lw~~~~Gg 207 (302)
T PF14870_consen 139 VVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN---------RNSSRRIQSMGFSPDGN--LWMLARGG 207 (302)
T ss_dssp EE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-----------SSS-EEEEEE-TTS---EEEEETTT
T ss_pred cccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc---------cCccceehhceecCCCC--EEEEeCCc
Confidence 22344467888999999998888865555667775432222111 34568899999999975 44455889
Q ss_pred cEEEEECCcceEEEEee-----cCCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 724 RIRVVDGIDLVHKFKGF-----RNTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 724 ~I~VwD~~~~~~~~~~~-----~~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
.|+.=+.......+... ...-.+..++|.+++...|+|+ .|.++
T Consensus 208 ~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~ 256 (302)
T PF14870_consen 208 QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL 256 (302)
T ss_dssp EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE
T ss_pred EEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE
Confidence 99988733333333221 1233478899999887777665 45443
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=84.51 E-value=1.2e+02 Score=38.16 Aligned_cols=155 Identities=10% Similarity=0.068 Sum_probs=87.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceE-------------EEEEccC-CCCEEEEEEC----------CCcEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVT-------------CIQFNPV-DDRYFISGSL----------DAKVRI 634 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~-------------~v~fsp~-dg~~L~sgs~----------Dg~I~I 634 (927)
++++.++.|+.|.-.|..+|+.+..|.....|. .+.-.|. .+..+++|+. +|.|+-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 678889999999999999999988776443331 1111110 2345666643 688999
Q ss_pred EeCCCCcEEEeccCC-------------------CcEEEEEECCCCCEEEEEE------------------CCCeEEEEE
Q 002407 635 WSIPERQVVDWNDLH-------------------EMVTAACYTPDGQGALVGS------------------YKGSCHLYN 677 (927)
Q Consensus 635 WDl~t~~~v~~~~~~-------------------~~V~sla~spdg~~l~tgs------------------~Dg~I~IwD 677 (927)
+|+.+++++-..... ..-..+++.+....+..+. ..+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 999999887432210 0112345555554544432 124577778
Q ss_pred CCCCeeeeecccccccccccCCCCCeEEEEEcC-CCC--cEEEEEECCCcEEEEECCcc
Q 002407 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAP-GSS--SEVLVTSADSRIRVVDGIDL 733 (927)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp-dg~--~~Llsgs~Dg~I~VwD~~~~ 733 (927)
+.+++..-.++...+..-.........=+.+.. ++. ..++.+..+|.++++|..+.
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG 479 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG 479 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC
Confidence 888887766653110000000001111111222 331 26888899999999995443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=84.34 E-value=87 Score=36.27 Aligned_cols=152 Identities=10% Similarity=0.069 Sum_probs=81.0
Q ss_pred eEEEEEccCCCCEEEEEECCCcE-EEEeCCCCc-EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 610 VTCIQFNPVDDRYFISGSLDAKV-RIWSIPERQ-VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 610 V~~v~fsp~dg~~L~sgs~Dg~I-~IWDl~t~~-~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
...+...+ ++.+++.+.. |.+ +-||--... ..........++.+.+.+++..++++ ..|.+. +....++.....
T Consensus 241 f~~v~~~~-dG~~~~vg~~-G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSR-GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcC-CCCEEEEECC-ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 34455566 6666655543 443 334322111 12233345678999999999877766 556654 333344311100
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC-Cc-ceEEEEeecCCcceEEEEEecCCCEEEEEECCC
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG-ID-LVHKFKGFRNTNSQISASLTANGRYVVSASEDS 765 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~-~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg 765 (927)
.+. ..........++.+.|.+++ .+++++..|.|.+... .+ .........-......+.|.++++.+++| .+|
T Consensus 317 ~f~--~~~~~~~~~~l~~v~~~~d~--~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G 391 (398)
T PLN00033 317 DFE--EADIKSRGFGILDVGYRSKK--EAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDG 391 (398)
T ss_pred cee--ecccCCCCcceEEEEEcCCC--cEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCc
Confidence 000 00001233458999999876 4777888888877652 21 12211111223456788887777666655 678
Q ss_pred cEEEE
Q 002407 766 YVYVW 770 (927)
Q Consensus 766 ~I~IW 770 (927)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 77655
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.24 E-value=19 Score=37.37 Aligned_cols=130 Identities=11% Similarity=0.035 Sum_probs=79.1
Q ss_pred CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE---EeccCC---CcEEEEEECC
Q 002407 586 MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV---DWNDLH---EMVTAACYTP 659 (927)
Q Consensus 586 ~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v---~~~~~~---~~V~sla~sp 659 (927)
.+|.-.++|..+-+++..+...+.=+.++. ++..|+.+....+++.-|..+-... +..... ..++.+.|-
T Consensus 109 ~egvaf~~d~~t~~~lg~~~y~GeGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V- 184 (262)
T COG3823 109 KEGVAFKYDADTLEELGRFSYEGEGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV- 184 (262)
T ss_pred ccceeEEEChHHhhhhcccccCCcceeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-
Confidence 467788899999999999888888888876 4445666555556666665543221 111111 233334443
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeeeccccccccc---ccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 660 DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK---KRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 660 dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~---~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
+|...+-.-.+..|...+..+++....+.+..-.+. ...+..-.+.+++.|+...++++|
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 455555555566677777777777666543221111 124456788999999887666655
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.21 E-value=8.9 Score=44.40 Aligned_cols=146 Identities=18% Similarity=0.170 Sum_probs=87.4
Q ss_pred CCCEEE-EEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCC-------EEEEEECCCeEEEEECCCCe--eeeecc
Q 002407 619 DDRYFI-SGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQ-------GALVGSYKGSCHLYNTSENK--LQQKSP 688 (927)
Q Consensus 619 dg~~L~-sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~-------~l~tgs~Dg~I~IwDl~~~~--~~~~~~ 688 (927)
+..+|+ .|.....++--|+.-|+++..-..+..+ -+.|.|+.+ .-++|-.+..|.-.|.+-.. +.....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 444444 4455566777889999998866666666 678888542 23455556666666665322 111100
Q ss_pred cccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
- .-.......+..-...| ++++++..|-|++||-.....+.........|..+..+.+|++|++.+. ..|.
T Consensus 557 K------dY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yll 627 (776)
T COG5167 557 K------DYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLL 627 (776)
T ss_pred h------hccccccccccccccCc--eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEE
Confidence 0 00111222333333333 8999999999999994332222222333556788899999999887764 5677
Q ss_pred EEECCC
Q 002407 769 VWKYEA 774 (927)
Q Consensus 769 IWdl~s 774 (927)
+-|+.-
T Consensus 628 L~d~~i 633 (776)
T COG5167 628 LTDVPI 633 (776)
T ss_pred EEeccc
Confidence 777754
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.19 E-value=57 Score=39.95 Aligned_cols=135 Identities=12% Similarity=0.188 Sum_probs=83.2
Q ss_pred eEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEE-EEe---cCCceEEEEEccCCCCEEEEE
Q 002407 551 TVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLK-IFS---HSDYVTCIQFNPVDDRYFISG 626 (927)
Q Consensus 551 ~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~-~~~---h~~~V~~v~fsp~dg~~L~sg 626 (927)
.+|..++..+..+.-..+.+..+.|+.+..|+....+|++++|++-...... ... ....|..+.|.. +|-.+++.
T Consensus 67 ~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-~GVavlt~ 145 (829)
T KOG2280|consen 67 RIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-NGVAVLTV 145 (829)
T ss_pred EEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEec-CceEEEec
Confidence 6788888888877766669999999999999999999999999986322111 010 112233333322 33222222
Q ss_pred ECCCcE---------EEEeCCC---------------C--------------------------cEEEeccCCCcEEEEE
Q 002407 627 SLDAKV---------RIWSIPE---------------R--------------------------QVVDWNDLHEMVTAAC 656 (927)
Q Consensus 627 s~Dg~I---------~IWDl~t---------------~--------------------------~~v~~~~~~~~V~sla 656 (927)
+|.+ .+|.+.. . +..........+..+.
T Consensus 146 --~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~ 223 (829)
T KOG2280|consen 146 --SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKIS 223 (829)
T ss_pred --CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEE
Confidence 2222 2222211 0 0001111224577888
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeeeeecc
Q 002407 657 YTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 657 ~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~ 688 (927)
++|+.++|+.=..+|.|.+-++...+....+.
T Consensus 224 VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 224 VSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 99999999999999999998887766655543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=83.73 E-value=18 Score=45.01 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=53.3
Q ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCC---------Cee---eeecccccccccccCCCCCeEEEEEcCCC--CcE
Q 002407 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSE---------NKL---QQKSPINLQNKKKRSHQRKITGFQFAPGS--SSE 715 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~---------~~~---~~~~~i~~~~~~~~~h~~~Vtsl~fspdg--~~~ 715 (927)
..|..+.++|+|.+++..+..|.+.+.=.+. ++. .....+..... .......|..+.|+|.+ ...
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-TSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhc-cCCCCceEEEEEEcCCCCCCCe
Confidence 5789999999999999998877654433221 111 11111111110 12345678999999974 358
Q ss_pred EEEEECCCcEEEEECC
Q 002407 716 VLVTSADSRIRVVDGI 731 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~ 731 (927)
|++-..|++||+||..
T Consensus 164 l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEecCCEEEEEecC
Confidence 9999999999999954
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=82.56 E-value=91 Score=35.14 Aligned_cols=152 Identities=13% Similarity=0.069 Sum_probs=88.0
Q ss_pred CCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 002407 567 LDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (927)
Q Consensus 567 ~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~ 644 (927)
...+.++.+.+++.++..+..|.+..-.-..++.-.... -...++++.+.+ ++..++++ ..|.+++=..+.+..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCccc
Confidence 456788899998777777777766542112222222222 456789999998 77766655 55766432334443222
Q ss_pred ecc-----CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 645 WND-----LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 645 ~~~-----~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
... ....+..+.+.+++..+++| .+|.+. .....++....... ........+.+.|..++ ..++.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~------~~~~~~~~~~~~~~~~~--~~~~~ 319 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPV------GEEVPSNFYKIVFLDPE--KGFVL 319 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCc------CCCCCcceEEEEEeCCC--ceEEE
Confidence 111 12357889999988755544 567654 34444443332110 01222457778877655 46778
Q ss_pred ECCCcEEEEEC
Q 002407 720 SADSRIRVVDG 730 (927)
Q Consensus 720 s~Dg~I~VwD~ 730 (927)
+..|.|..|+.
T Consensus 320 G~~G~il~~~~ 330 (334)
T PRK13684 320 GQRGVLLRYVG 330 (334)
T ss_pred CCCceEEEecC
Confidence 88888887763
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=82.17 E-value=86 Score=34.57 Aligned_cols=171 Identities=11% Similarity=0.134 Sum_probs=89.4
Q ss_pred cEEEEeCCCCcEEEEEe-------cCCceEEEEEccCCC----CEEEEE-ECCCcEEEEeCCCCcEEEeccC--------
Q 002407 589 TVRLWHLSSKTCLKIFS-------HSDYVTCIQFNPVDD----RYFISG-SLDAKVRIWSIPERQVVDWNDL-------- 648 (927)
Q Consensus 589 tV~lWDl~t~~~~~~~~-------h~~~V~~v~fsp~dg----~~L~sg-s~Dg~I~IWDl~t~~~v~~~~~-------- 648 (927)
.|.+||+.+++.++++. ....+..+.+...++ .+++.. ...+.|.|+|+.+++.-....+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 68899999999988885 245678888876322 244333 3345799999998765443222
Q ss_pred ------------CCcEEEEEECC---CCCEEEEEECCCeEEEEECCCCeeeeecccccc----cccccCC-CCCeEEEEE
Q 002407 649 ------------HEMVTAACYTP---DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ----NKKKRSH-QRKITGFQF 708 (927)
Q Consensus 649 ------------~~~V~sla~sp---dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~----~~~~~~h-~~~Vtsl~f 708 (927)
.+.+..++.+| ++++|.-....+. ++|.+.+..+......... ..+..+. .....++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 12345555544 4444544433221 2222221111000000000 0000111 235667888
Q ss_pred cCCCCcEEEEEECCCcEEEEECCc-----ceEEEE-eecCCcceEEEEEec--CCCEEEEE
Q 002407 709 APGSSSEVLVTSADSRIRVVDGID-----LVHKFK-GFRNTNSQISASLTA--NGRYVVSA 761 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~VwD~~~-----~~~~~~-~~~~~~~v~sv~fsp--dg~~Lasg 761 (927)
.++|. ++++--..+.|..|+... ....+. ....-..+..+.+.+ +|.+.+..
T Consensus 194 D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGN-LYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTE-EEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCc-EEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 88764 677778889999999665 223332 222245667888888 66555544
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=81.75 E-value=63 Score=36.28 Aligned_cols=145 Identities=12% Similarity=0.197 Sum_probs=83.2
Q ss_pred CCCEEEEEecCC-cEEEEEeCCCc------EEEEeCCCC----cEEEEE---e---cCC--------ceEEEEEccCCCC
Q 002407 567 LDDVLDLSWSKS-QHLLSSSMDKT------VRLWHLSSK----TCLKIF---S---HSD--------YVTCIQFNPVDDR 621 (927)
Q Consensus 567 ~~~V~~l~~spd-~~L~Sgs~Dgt------V~lWDl~t~----~~~~~~---~---h~~--------~V~~v~fsp~dg~ 621 (927)
-+.+..|.+.++ +.+++.+.++. +..+++... ..+... . ..+ ..-+|++.+ ++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCC
Confidence 356778888854 88888888888 766665541 111111 1 111 334788855 888
Q ss_pred EEEEEECC------CcEEEEeCCCCcEEEec----------------cCCCcEEEEEECCCCCEEEEEECCC--------
Q 002407 622 YFISGSLD------AKVRIWSIPERQVVDWN----------------DLHEMVTAACYTPDGQGALVGSYKG-------- 671 (927)
Q Consensus 622 ~L~sgs~D------g~I~IWDl~t~~~v~~~----------------~~~~~V~sla~spdg~~l~tgs~Dg-------- 671 (927)
++++.-.+ ..|..++.. ++.+..+ ..+....+|+++|+|+.|+++....
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 77776666 678888866 4432211 2235788999999999777654321
Q ss_pred ------eEEE--EECCC-CeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 672 ------SCHL--YNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 672 ------~I~I--wDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
.++| ||..+ +.....+.+.+...........|..+.+.+++.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~ 227 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR 227 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc
Confidence 1444 45444 322333222221100111456788888888775
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.59 E-value=0.8 Score=55.69 Aligned_cols=115 Identities=14% Similarity=0.195 Sum_probs=68.9
Q ss_pred EccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCC--CCcEEE-----EEe-cCCceEEEEEccC--CCCEEEEEECCC
Q 002407 563 FQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLS--SKTCLK-----IFS-HSDYVTCIQFNPV--DDRYFISGSLDA 630 (927)
Q Consensus 563 l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~--t~~~~~-----~~~-h~~~V~~v~fsp~--dg~~L~sgs~Dg 630 (927)
++|..+.|..|.|-.. .+++ -.-|.+.||++. .|+... ... ...++.-|.|.|. +.-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 4577788888888543 2233 334678899876 333222 111 3334444555442 456677777788
Q ss_pred cEEEEeCCCCcEEEeccCCCc-----------EEEEEECCCCCEEEEEECCCeEEEEECC
Q 002407 631 KVRIWSIPERQVVDWNDLHEM-----------VTAACYTPDGQGALVGSYKGSCHLYNTS 679 (927)
Q Consensus 631 ~I~IWDl~t~~~v~~~~~~~~-----------V~sla~spdg~~l~tgs~Dg~I~IwDl~ 679 (927)
.|++..+.....-.+..|... +.--.++|||+.|+.++.||.+++|.+.
T Consensus 206 ~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 206 EIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 888877654322111112222 2222379999999999999999999765
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=81.17 E-value=11 Score=39.78 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=53.9
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-------c--------cCCCcEEEEEECCCCCEEEEEECCC
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-------N--------DLHEMVTAACYTPDGQGALVGSYKG 671 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-------~--------~~~~~V~sla~spdg~~l~tgs~Dg 671 (927)
..++..+.. .+++|++.+.+|.+++||+.+++.+.. . .....|..+.++.+|.-+++-+ +|
T Consensus 12 gs~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng 87 (219)
T PF07569_consen 12 GSPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG 87 (219)
T ss_pred CCceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC
Confidence 344444443 678899999999999999999876531 1 2446788889998887666554 57
Q ss_pred eEEEEECCCCeeee
Q 002407 672 SCHLYNTSENKLQQ 685 (927)
Q Consensus 672 ~I~IwDl~~~~~~~ 685 (927)
..+.|+..-+..+.
T Consensus 88 ~~y~y~~~L~~W~~ 101 (219)
T PF07569_consen 88 DSYSYSPDLGCWIR 101 (219)
T ss_pred CEEEeccccceeEE
Confidence 88999877655443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=81.00 E-value=1.2e+02 Score=35.38 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=32.0
Q ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
..+.+++.+|.+++.++...=|.|.++|+..+..+...
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW 345 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW 345 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh
Confidence 35889999999999999888899999999988766543
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=80.95 E-value=19 Score=44.23 Aligned_cols=121 Identities=12% Similarity=0.077 Sum_probs=71.3
Q ss_pred cEEEEEECC--CCCEEEEEECCCeEEEEECCCCe-----e----ee-ecccccccccccCCCCCeEEEEEc--CCCCcEE
Q 002407 651 MVTAACYTP--DGQGALVGSYKGSCHLYNTSENK-----L----QQ-KSPINLQNKKKRSHQRKITGFQFA--PGSSSEV 716 (927)
Q Consensus 651 ~V~sla~sp--dg~~l~tgs~Dg~I~IwDl~~~~-----~----~~-~~~i~~~~~~~~~h~~~Vtsl~fs--pdg~~~L 716 (927)
.|+.+.... +...|+++..||.|.+|.+..-. . .. .........-.......+++++++ ... ++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEE
Confidence 355554433 45678999999999999763210 0 00 000000000112334578899988 543 477
Q ss_pred EEEECCCcEEEEECCc---ceEEEEeecCCcceEEEEEecCC-----C-EEEEEECCCcEEEEEC
Q 002407 717 LVTSADSRIRVVDGID---LVHKFKGFRNTNSQISASLTANG-----R-YVVSASEDSYVYVWKY 772 (927)
Q Consensus 717 lsgs~Dg~I~VwD~~~---~~~~~~~~~~~~~v~sv~fspdg-----~-~Lasgs~Dg~I~IWdl 772 (927)
++++....|.||-... .......+.+...|.+++|-++. . +|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7888888888875211 11111122345667888887643 2 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=80.64 E-value=27 Score=33.77 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=67.0
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEeCCCC--------cEEEeccCCCcEEEEEECC-----CCCEEEEEECCCeEEEEEC
Q 002407 612 CIQFNPVDDRYFISGSLDAKVRIWSIPER--------QVVDWNDLHEMVTAACYTP-----DGQGALVGSYKGSCHLYNT 678 (927)
Q Consensus 612 ~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--------~~v~~~~~~~~V~sla~sp-----dg~~l~tgs~Dg~I~IwDl 678 (927)
.-.|.. ....|++++.-|+|.|++.... ..+..+.....|++++-.+ ....|++|+ ...+..||+
T Consensus 3 iGkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 345555 4446888888899999987533 3456677778888887554 234566665 567999999
Q ss_pred CCCeeeeecccccccccccCCCCCeEEEEEcCCC--CcEEEEEECCCcEEEEE
Q 002407 679 SENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS--SSEVLVTSADSRIRVVD 729 (927)
Q Consensus 679 ~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg--~~~Llsgs~Dg~I~VwD 729 (927)
..+.-+... .-...|.++.+-.-+ ..-++..+.+..|.-||
T Consensus 81 ~~N~d~Fyk----------e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd 123 (136)
T PF14781_consen 81 ENNSDLFYK----------EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFD 123 (136)
T ss_pred ccCchhhhh----------hCccceeEEEEEecCCCCCcEEEECceEEEEEeC
Confidence 887655432 334567776653211 12355555566666666
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=80.21 E-value=1.1e+02 Score=34.45 Aligned_cols=104 Identities=11% Similarity=0.111 Sum_probs=55.0
Q ss_pred CcEEEEEeCC-------CcEEEEeCCCCcEEEEEecC--C-----ceEEEEEccCCCCEEEEEECC-----CcEEEEeCC
Q 002407 578 SQHLLSSSMD-------KTVRLWHLSSKTCLKIFSHS--D-----YVTCIQFNPVDDRYFISGSLD-----AKVRIWSIP 638 (927)
Q Consensus 578 d~~L~Sgs~D-------gtV~lWDl~t~~~~~~~~h~--~-----~V~~v~fsp~dg~~L~sgs~D-----g~I~IWDl~ 638 (927)
+..++.|+.+ ..+.+||+.+.+-...-... . ....+.+ ++++++.|+.+ ..+.+||+.
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEECC
Confidence 3445555542 35788888876544322111 1 1122222 56777777754 247788987
Q ss_pred CCcEEEeccC-----C-CcEEEEEECCCCCEEEEEECC-----------CeEEEEECCCCeee
Q 002407 639 ERQVVDWNDL-----H-EMVTAACYTPDGQGALVGSYK-----------GSCHLYNTSENKLQ 684 (927)
Q Consensus 639 t~~~v~~~~~-----~-~~V~sla~spdg~~l~tgs~D-----------g~I~IwDl~~~~~~ 684 (927)
+.+-...... + ......+..-++++++.|+.+ ..+.+||+.+.+..
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 7654332211 1 111222223456777777753 24778998877654
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=80.14 E-value=14 Score=42.85 Aligned_cols=135 Identities=15% Similarity=0.206 Sum_probs=81.0
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccC-------CCCEEEEEECCCcEEEEeCCC-CcEEEeccCCC--
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPV-------DDRYFISGSLDAKVRIWSIPE-RQVVDWNDLHE-- 650 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~-------dg~~L~sgs~Dg~I~IWDl~t-~~~v~~~~~~~-- 650 (927)
+..+.....++--|++.|+.+........| -++|.|. +...|+ |-.+..|.-.|.+- +..+......+
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKdY~ 560 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKDYK 560 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehhcc
Confidence 345666677888889999998888855555 6778772 123344 44445555455433 32222222222
Q ss_pred ---cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 651 ---MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 651 ---~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
...+..-. ...++++++..|-|++||--.-.....+ .+....|..+....+|. ++++++ ...|.+
T Consensus 561 tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtal---------P~lG~aIk~idvta~Gk-~ilaTC-k~yllL 628 (776)
T COG5167 561 TKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTAL---------PGLGDAIKHIDVTANGK-HILATC-KNYLLL 628 (776)
T ss_pred ccccccccccc-cCceEEEecCCCceeeehhhcchhhhcC---------cccccceeeeEeecCCc-EEEEee-cceEEE
Confidence 23333333 3448999999999999996443322221 36667888899999887 444444 345555
Q ss_pred EE
Q 002407 728 VD 729 (927)
Q Consensus 728 wD 729 (927)
-|
T Consensus 629 ~d 630 (776)
T COG5167 629 TD 630 (776)
T ss_pred Ee
Confidence 55
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=80.08 E-value=95 Score=34.88 Aligned_cols=41 Identities=10% Similarity=-0.035 Sum_probs=21.7
Q ss_pred CcEEEEeCCCCcEEEeccCCC--cEEEEEECCCCCEEEEEECC
Q 002407 630 AKVRIWSIPERQVVDWNDLHE--MVTAACYTPDGQGALVGSYK 670 (927)
Q Consensus 630 g~I~IWDl~t~~~v~~~~~~~--~V~sla~spdg~~l~tgs~D 670 (927)
..+.+||..+.+-........ .....+..-++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 457888887765443322221 11122223467788887753
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 927 | ||||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-15 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-15 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-15 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-15 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-15 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-15 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-15 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-15 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-15 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-15 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-15 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-15 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-15 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-15 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-15 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-15 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 3e-15 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-12 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 3e-09 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 4e-05 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 5e-08 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-06 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 3e-06 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 5e-06 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 5e-06 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 5e-06 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 6e-06 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 7e-06 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-05 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 9e-05 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 1e-04 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 1e-04 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 1e-04 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-04 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 2e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 2e-04 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-04 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-04 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 4e-04 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 4e-04 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 4e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 4e-04 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 5e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 7e-04 | ||
| 4e5z_B | 436 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 8e-04 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 8e-04 | ||
| 3ei4_B | 436 | Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | 9e-04 | ||
| 4e54_B | 435 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 9e-04 |
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | Back alignment and structure |
|
| >pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 927 | |||
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.98 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.98 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.98 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.97 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.96 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.96 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.96 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.95 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.95 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.95 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.95 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.94 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.94 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.94 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.93 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.93 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.92 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.92 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.92 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.91 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.91 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.91 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.91 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.9 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.9 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.89 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.86 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.86 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.85 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.85 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.85 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.83 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.82 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.81 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.81 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.8 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.8 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.8 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.8 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.79 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.78 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.77 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.77 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.76 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.75 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.73 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.73 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.72 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.72 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.71 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.69 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.67 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.67 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.66 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.65 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.63 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.63 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.62 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.6 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.59 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.59 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.57 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.56 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.56 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.53 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.51 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.51 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.49 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.49 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.48 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.47 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.47 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.44 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.43 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.42 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.42 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.42 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.39 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.39 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.38 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.36 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.36 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.34 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.34 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.34 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.3 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.29 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.27 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.26 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.24 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.24 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.24 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.23 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.18 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.14 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.12 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.09 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.08 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.08 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.08 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.08 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.07 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.06 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.04 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.03 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.03 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.02 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.02 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.99 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.98 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.94 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.91 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.85 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.85 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.83 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.83 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.83 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.76 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.74 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.69 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.68 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.66 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.62 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.61 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.58 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.56 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.54 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.52 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.51 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.5 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.49 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.48 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.43 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.41 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.4 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.39 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.37 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.36 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.35 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.33 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.31 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.3 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.22 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.2 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.19 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.16 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.14 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.12 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.03 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.02 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.0 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.95 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.91 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.89 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.88 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.85 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.85 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.82 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.81 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.81 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.77 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.73 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.72 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.68 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.68 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.65 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.63 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.63 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.57 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.54 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.53 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.48 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.46 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.4 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.39 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.37 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.36 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.35 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.34 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.32 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.31 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.22 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.21 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.18 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.17 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.15 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.06 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.96 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.94 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.65 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.64 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.43 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.42 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.36 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.23 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.14 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.99 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 95.95 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.92 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.82 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 95.44 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.38 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.16 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 95.16 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.06 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 94.95 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 94.79 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 94.79 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 94.65 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 94.62 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 94.45 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 94.13 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 93.65 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 93.63 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 93.35 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 93.24 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.02 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 93.0 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 92.74 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 92.69 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 92.52 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 92.24 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 91.78 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 91.7 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 91.55 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 91.54 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 91.52 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 91.32 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 90.97 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 90.55 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 89.66 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 89.63 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 89.32 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 89.08 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 88.13 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 87.58 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 86.16 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 85.42 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 83.32 |
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-44 Score=430.33 Aligned_cols=461 Identities=14% Similarity=0.122 Sum_probs=335.7
Q ss_pred CCceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC
Q 002407 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 409 ~g~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~ 488 (927)
+....+....++..+ +.+. +..|++|+...... .+.|.+|.+.|++++|+|+|++||+|+.|++|+|||+.++
T Consensus 19 g~~~~~~~spdg~~l-~~~~-~~~v~l~~~~~~~~-----~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~ 91 (611)
T 1nr0_A 19 GTAVVLGNTPAGDKI-QYCN-GTSVYTVPVGSLTD-----TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 91 (611)
T ss_dssp TCCCCCEECTTSSEE-EEEE-TTEEEEEETTCSSC-----CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred CceeEEeeCCCCCEE-EeCC-CCEEEEecCCCccc-----CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCC
Confidence 444444444455444 3444 34899998765443 3566899999999999999999999999999999999765
Q ss_pred cccceeecccccCccccEEEEccCCCCCeecccccCC----ceeeecccccccccccccCcccccceEeecCCCceEEEc
Q 002407 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN----HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ 564 (927)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~ 564 (927)
+..... ...++...|..++|+|++..+++++.+. .+ .+|+ .++.+..+.
T Consensus 92 ~~~~~~---~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v-----------------------~~wd-~~~~~~~l~ 144 (611)
T 1nr0_A 92 THILKT---TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV-----------------------FLFD-TGTSNGNLT 144 (611)
T ss_dssp TCCEEE---EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE-----------------------EETT-TCCBCBCCC
T ss_pred cceeeE---eecccCCceEEEEECCCCCEEEEEECCCCceeEE-----------------------EEee-CCCCcceec
Confidence 432211 1245667899999999999988775442 22 2232 234556788
Q ss_pred cCCCCEEEEEecCC-c-EEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 565 GHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 565 gH~~~V~~l~~spd-~-~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
+|...|++++|+|+ . .|++++.|++|++||..+++++..+. |...|++++|+| ++++|++++.|++|++||+.+++
T Consensus 145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGT 223 (611)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCc
Confidence 99999999999998 3 59999999999999999998888887 999999999999 99999999999999999999988
Q ss_pred EEEec--------cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccc----------------------
Q 002407 642 VVDWN--------DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL---------------------- 691 (927)
Q Consensus 642 ~v~~~--------~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~---------------------- 691 (927)
.+..+ .|...|.+++|+|++++|++++.|++|++||+.+++....+....
T Consensus 224 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 303 (611)
T 1nr0_A 224 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 303 (611)
T ss_dssp EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC
Confidence 87655 577899999999999999999999999999999887765442110
Q ss_pred ------------ccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEe-ecCCcceEEEEEecCCCEE
Q 002407 692 ------------QNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKG-FRNTNSQISASLTANGRYV 758 (927)
Q Consensus 692 ------------~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~-~~~~~~v~sv~fspdg~~L 758 (927)
......+|...|++++|+|++. +|++++.|++|++||.......... ..+...+.+++|++++ .|
T Consensus 304 ~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~-~l 381 (611)
T 1nr0_A 304 GFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-DL 381 (611)
T ss_dssp CCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-CE
T ss_pred CcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC-cE
Confidence 0112347889999999999987 8999999999999997654333222 3467789999999776 68
Q ss_pred EEEECCCcEEEEECCCCCCccccc---ccceeeeeeeecC----------------------------CCeEEEEecCCc
Q 002407 759 VSASEDSYVYVWKYEAESRPSRSK---SITVTHSYEHFHC----------------------------QDVSVAIPWPGV 807 (927)
Q Consensus 759 asgs~Dg~I~IWdl~s~~~~~~~~---~~~~~~~~~~~~~----------------------------~~v~vavs~~g~ 807 (927)
++++.|+.|++|++.......... ..........+.+ ....++++.+|.
T Consensus 382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~ 461 (611)
T 1nr0_A 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 461 (611)
T ss_dssp EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence 899999999999987653221000 0000000001111 112344555566
Q ss_pred eeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchh-hccc-----cc
Q 002407 808 GDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEK-LVLT-----AR 881 (927)
Q Consensus 808 ~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~-l~~~-----~~ 881 (927)
..+....++.+..|+........... .++ ...+..++|||++++|++++ .|+.+++|+... .... ..
T Consensus 462 ~lasgs~D~~v~lwd~~~~~~~~~~~-~~h--~~~v~~v~fspdg~~las~s----~d~~v~~w~~~~~~~~~~~~~~~~ 534 (611)
T 1nr0_A 462 FVAVGGQDSKVHVYKLSGASVSEVKT-IVH--PAEITSVAFSNNGAFLVATD----QSRKVIPYSVANNFELAHTNSWTF 534 (611)
T ss_dssp EEEEEETTSEEEEEEEETTEEEEEEE-EEC--SSCEEEEEECTTSSEEEEEE----TTSCEEEEEGGGTTEESCCCCCCC
T ss_pred EEEEeCCCCeEEEEEccCCceeeeec-cCC--CCceEEEEECCCCCEEEEEc----CCCCEEEEEcCCCCceeeeeeeee
Confidence 66666666666666543321111111 111 13345678999999999987 889999999764 2211 12
Q ss_pred cCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeecC
Q 002407 882 NRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNF 921 (927)
Q Consensus 882 ~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~~ 921 (927)
|...+. +++|||||++||||+.||+||+|+..
T Consensus 535 H~~~V~--------~v~fspdg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 535 HTAKVA--------CVSWSPDNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp CSSCEE--------EEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ccccee--------EEEECCCCCEEEEEECCCcEEEEECC
Confidence 554444 47999999999999999999999953
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-42 Score=406.27 Aligned_cols=448 Identities=21% Similarity=0.339 Sum_probs=336.3
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
.++++|..++.|++|+...+ +.++|.+|.+.|++|+|+|||++||+++.|++|+|||+. ++.+..+ .+
T Consensus 29 ~~las~~~d~~v~iWd~~~~------~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~~~~~~~-----~~ 96 (577)
T 2ymu_A 29 QTIASASDDKTVKLWNRNGQ------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL-----TG 96 (577)
T ss_dssp SCEEEEETTSEEEEECTTSC------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEE-----CC
T ss_pred CEEEEEeCCCEEEEEECCCC------EEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-CCEEEEE-----EC
Confidence 45677788899999995322 346789999999999999999999999999999999964 4444443 46
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccc-------------------------------------------
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR------------------------------------------- 538 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~------------------------------------------- 538 (927)
+...|..++|+|++.+++++..++.+..+........
T Consensus 97 ~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (577)
T 2ymu_A 97 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 176 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeec
Confidence 7788999999999999999887776544332110000
Q ss_pred ---------cccccCc--cc-----ccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEE
Q 002407 539 ---------KSLSLDH--MV-----VPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL 601 (927)
Q Consensus 539 ---------~~~~~~~--~~-----~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~ 601 (927)
.....+. +. ....+|+..++.+..+.+|...|.+++|+|+ .+|++++.|+.|++||.. ++.+
T Consensus 177 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~ 255 (577)
T 2ymu_A 177 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLL 255 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEE
T ss_pred cCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEE
Confidence 0000000 00 0124667778888899999999999999999 679999999999999975 4555
Q ss_pred EEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Q 002407 602 KIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 602 ~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~ 680 (927)
..+. |...|++++|+| ++++|++++.|+.|++|+...........|...|.+++|+|++++|++++.|+.|++||+..
T Consensus 256 ~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~ 334 (577)
T 2ymu_A 256 QTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 334 (577)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred EEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence 5555 999999999999 99999999999999999986655555667788999999999999999999999999999876
Q ss_pred CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-cceEEEEeecCCcceEEEEEecCCCEEE
Q 002407 681 NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-DLVHKFKGFRNTNSQISASLTANGRYVV 759 (927)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-~~~~~~~~~~~~~~v~sv~fspdg~~La 759 (927)
...... ..|...|++++|+|++. +|++++.|+.|++||.. .....+. .+...|.+++|+|++++|+
T Consensus 335 ~~~~~~----------~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~~~~~~~~~~--~~~~~v~~~~~s~dg~~l~ 401 (577)
T 2ymu_A 335 QHLQTL----------TGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIA 401 (577)
T ss_dssp CEEEEE----------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTCCEEEEEE--CCSSCEEEEEECTTSSCEE
T ss_pred CeeEEE----------eCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcCCCCEEEEec--CCCCCeEEEEECCCCCEEE
Confidence 554322 47888999999999987 89999999999999953 3344444 3567899999999999999
Q ss_pred EEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEE-EecCCceeEEeecCCceeeccccCCCCCcceeccCCC
Q 002407 760 SASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVA-IPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNE 838 (927)
Q Consensus 760 sgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~va-vs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~ 838 (927)
+++.|+.|+||+... +.......+........|++++..++ .+.++.+.+|......+..+. ++.
T Consensus 402 ~~~~d~~v~~~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~-------------~~~ 467 (577)
T 2ymu_A 402 SASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLT-------------GHS 467 (577)
T ss_dssp EEETTSEEEEECTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEE-------------CCS
T ss_pred EEeCCCEEEEEeCCC-CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEc-------------CCC
Confidence 999999999999643 32333333333333445555544433 344566666664443332221 111
Q ss_pred cccCcceeeecCCCCeEEEeccccccCccccccCchhhc--cccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEE
Q 002407 839 DCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLV--LTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIR 916 (927)
Q Consensus 839 ~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~--~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~Ir 916 (927)
.....++|+|++++|++++ .|+.+++|+..... ...+|..++. +++|+|||++||||+.||.|+
T Consensus 468 --~~v~~~~~spd~~~las~~----~d~~i~iw~~~~~~~~~~~~h~~~v~--------~l~~s~dg~~l~s~~~dg~v~ 533 (577)
T 2ymu_A 468 --SSVRGVAFSPDGQTIASAS----DDKTVKLWNRNGQLLQTLTGHSSSVR--------GVAFSPDGQTIASASDDKTVK 533 (577)
T ss_dssp --SCEEEEEECTTSCEEEEEE----TTSEEEEEETTSCEEEEEECCSSCEE--------EEEECTTSSCEEEEETTSEEE
T ss_pred --CCEEEEEEcCCCCEEEEEe----CCCEEEEEcCCCCEEEEEeCCCCCEE--------EEEEcCCCCEEEEEECcCEEE
Confidence 2234567999999999987 78899999865321 2345555554 468999999999999999999
Q ss_pred EeecCCCc
Q 002407 917 AYQNFGLP 924 (927)
Q Consensus 917 vW~~~glP 924 (927)
+|+..|.+
T Consensus 534 lwd~~~~~ 541 (577)
T 2ymu_A 534 LWNRNGQL 541 (577)
T ss_dssp EECTTSCE
T ss_pred EEeCCCCE
Confidence 99965543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-42 Score=413.59 Aligned_cols=433 Identities=17% Similarity=0.214 Sum_probs=322.3
Q ss_pred CCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEecCcCccccee
Q 002407 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED----CVIHVWQVVESERKGEL 494 (927)
Q Consensus 419 d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~D----gtVrVWdv~~~~~~~~l 494 (927)
....++++|..+++|++|+...++.. ...++.+|.+.|.+|+|+|+|++||+++.+ +.|++||. +.....
T Consensus 69 pdg~~lasg~~d~~v~lWd~~~~~~~---~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~- 142 (611)
T 1nr0_A 69 PSGYYCASGDVHGNVRIWDTTQTTHI---LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGN- 142 (611)
T ss_dssp TTSSEEEEEETTSEEEEEESSSTTCC---EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBC-
T ss_pred CCCcEEEEEeCCCCEEEeECCCCcce---eeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcce-
Confidence 33467889999999999997654322 235678999999999999999999999875 46778874 433333
Q ss_pred ecccccCccccEEEEccCCCCC-eecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEE
Q 002407 495 LEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLD 572 (927)
Q Consensus 495 ~~~~~~~~~~~v~~v~~spd~~-~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~ 572 (927)
..+|...|..++|+|++. .+++++.++.+. +|+. ..+.+..+.+|...|++
T Consensus 143 ----l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~-----------------------lwd~~~~~~~~~l~~H~~~V~~ 195 (611)
T 1nr0_A 143 ----LTGQARAMNSVDFKPSRPFRIISGSDDNTVA-----------------------IFEGPPFKFKSTFGEHTKFVHS 195 (611)
T ss_dssp ----CCCCSSCEEEEEECSSSSCEEEEEETTSCEE-----------------------EEETTTBEEEEEECCCSSCEEE
T ss_pred ----ecCCCCCceEEEECCCCCeEEEEEeCCCeEE-----------------------EEECCCCeEeeeeccccCceEE
Confidence 357888999999999986 588888888774 3333 23556788999999999
Q ss_pred EEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEE--------ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE
Q 002407 573 LSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF--------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (927)
Q Consensus 573 l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~--------~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v 643 (927)
++|+|+ .+|++++.|++|+|||+.+++++..+ .|...|.+++|+| ++++|++++.|++|++||+.+++++
T Consensus 196 v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~ 274 (611)
T 1nr0_A 196 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVE 274 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcee
Confidence 999999 78999999999999999999998887 5899999999999 9999999999999999999887654
Q ss_pred Ee--------------------------------------------ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Q 002407 644 DW--------------------------------------------NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (927)
Q Consensus 644 ~~--------------------------------------------~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~ 679 (927)
.. ..|...|++++|+|+|++|++++.|+.|++||+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 354 (611)
T ss_dssp EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence 31 2456789999999999999999999999999999
Q ss_pred CCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce---------------EE--------
Q 002407 680 ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV---------------HK-------- 736 (927)
Q Consensus 680 ~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~---------------~~-------- 736 (927)
++.....+. ..|...|.+++|++++ .+++++.|+.|++|+..... ..
T Consensus 355 ~~~~~~~~~--------~~h~~~v~~~~~s~~~--~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 424 (611)
T 1nr0_A 355 TGISNRVFP--------DVHATMITGIKTTSKG--DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD 424 (611)
T ss_dssp TCCEEECSS--------CSCSSCEEEEEECTTS--CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS
T ss_pred CCceeeecc--------cCCcceEEEEEECCCC--cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCc
Confidence 987655432 3688899999999865 58899999999999843210 00
Q ss_pred -----------------EEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc-cccccceeeeeeeecCCCe
Q 002407 737 -----------------FKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS-RSKSITVTHSYEHFHCQDV 798 (927)
Q Consensus 737 -----------------~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~-~~~~~~~~~~~~~~~~~~v 798 (927)
+....+...+.+++|+|||++|++|+.|+.|+||++.+..... ....+........|++++.
T Consensus 425 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~ 504 (611)
T 1nr0_A 425 IAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA 504 (611)
T ss_dssp CEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS
T ss_pred EEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCC
Confidence 0011123557899999999999999999999999997643210 0111222233344554443
Q ss_pred EEE-EecCCceeEEeecC-CceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhh
Q 002407 799 SVA-IPWPGVGDTWGLQD-TYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKL 876 (927)
Q Consensus 799 ~va-vs~~g~~~i~~~~d-~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l 876 (927)
.++ .+.++.+.+|.... ..+ .......+| ...+..++||||+++||+++ .|+.+++|+.+..
T Consensus 505 ~las~s~d~~v~~w~~~~~~~~----------~~~~~~~~H--~~~V~~v~fspdg~~lasgs----~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 505 FLVATDQSRKVIPYSVANNFEL----------AHTNSWTFH--TAKVACVSWSPDNVRLATGS----LDNSVIVWNMNKP 568 (611)
T ss_dssp EEEEEETTSCEEEEEGGGTTEE----------SCCCCCCCC--SSCEEEEEECTTSSEEEEEE----TTSCEEEEETTCT
T ss_pred EEEEEcCCCCEEEEEcCCCCce----------eeeeeeeec--ccceeEEEECCCCCEEEEEE----CCCcEEEEECCCc
Confidence 333 33445555555433 111 000000111 13345578999999999987 8999999997642
Q ss_pred c-----ccccc-CCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 877 V-----LTARN-RSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 877 ~-----~~~~~-~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
. ...+| ...+. +++|+|+++ |+||+.||+||+|+.
T Consensus 569 ~~~~~~~~~~h~~~~v~--------~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 569 SDHPIIIKGAHAMSSVN--------SVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp TSCCEEETTSSTTSCEE--------EEEEEETTE-EEEEETTSCEEEEEC
T ss_pred ccccchhhccCcccCee--------EEEEcCCCE-EEEecCCCCEEEEec
Confidence 1 22344 44443 468999999 999999999999983
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=385.10 Aligned_cols=420 Identities=21% Similarity=0.353 Sum_probs=329.0
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..+..+.....+++|..... ....+..|...|.++.|+|++++|++++.|+.|+||+.. ++....+ .+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~-----~~ 219 (577)
T 2ymu_A 152 QTIASASDDKTVKLWNRNGQ------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL-----TG 219 (577)
T ss_dssp SCEEEEETTSEEEEECTTSC------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEE-----EC
T ss_pred ccceecccccceecccccee------eeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC-CcEEEEE-----ec
Confidence 34566677778888875433 234557899999999999999999999999999999964 3433333 45
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~ 580 (927)
+...+..++++|++..++++..++.+ .+|+...+.+..+.+|...|++++|+|+ ..
T Consensus 220 ~~~~v~~~~~s~dg~~l~~~~~d~~i-----------------------~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~ 276 (577)
T 2ymu_A 220 HSSSVRGVAFSPDGQTIASASDDKTV-----------------------KLWNRNGQLLQTLTGHSSSVNGVAFRPDGQT 276 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCE-----------------------EEECTTSCEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEE-----------------------EEEeCCCCEEEEEecCCCCEEEEEEcCCCCE
Confidence 67789999999999999998888776 5666677888899999999999999999 78
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECC
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTP 659 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~sp 659 (927)
|++++.|++|++|+.. ++.+..+. |...|.+++|+| ++.+|++++.|+.|++||+....+.....+...+.+++|+|
T Consensus 277 l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~ 354 (577)
T 2ymu_A 277 IASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSP 354 (577)
T ss_dssp EEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECT
T ss_pred EEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECC
Confidence 9999999999999975 45555554 999999999999 99999999999999999998888777788889999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-cceEEEE
Q 002407 660 DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-DLVHKFK 738 (927)
Q Consensus 660 dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-~~~~~~~ 738 (927)
++++|++++.|+.|++||.. ++....+ ..|...|++++|+|++. +|++++.|+.|++||.. .....+.
T Consensus 355 ~g~~l~~~~~dg~v~~~~~~-~~~~~~~---------~~~~~~v~~~~~s~dg~-~l~~~~~d~~v~~~~~~~~~~~~~~ 423 (577)
T 2ymu_A 355 DGQTIASASDDKTVKLWNRN-GQLLQTL---------TGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT 423 (577)
T ss_dssp TSSEEEEEETTSEEEEEETT-CCEEEEE---------ECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTTCCEEEEEE
T ss_pred CCCEEEEEeCCCEEEEEcCC-CCEEEEe---------cCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCEEEEec
Confidence 99999999999999999964 4444432 47889999999999987 79999999999999953 3344444
Q ss_pred eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEE-EecCCceeEEeecCCc
Q 002407 739 GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVA-IPWPGVGDTWGLQDTY 817 (927)
Q Consensus 739 ~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~va-vs~~g~~~i~~~~d~~ 817 (927)
. +...|.+++|+|++++|++++.|+.|++|++.. ........+........|++++..++ .+.++.+.+|...+..
T Consensus 424 ~--~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~ 500 (577)
T 2ymu_A 424 G--HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 500 (577)
T ss_dssp C--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCE
T ss_pred C--CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCE
Confidence 3 567899999999999999999999999999754 32333333333334455555544443 3445666666644433
Q ss_pred eeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhh--ccccccCCCceecccCCCC
Q 002407 818 LDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKL--VLTARNRSPRTSLDISNGI 895 (927)
Q Consensus 818 i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l--~~~~~~~s~v~s~~~~~~~ 895 (927)
+..+. ++. ..+..++|||++++|++++ .|+.+++|+.... ....+|..++.
T Consensus 501 ~~~~~-------------~h~--~~v~~l~~s~dg~~l~s~~----~dg~v~lwd~~~~~~~~~~~h~~~v~-------- 553 (577)
T 2ymu_A 501 LQTLT-------------GHS--SSVRGVAFSPDGQTIASAS----DDKTVKLWNRNGQLLQTLTGHSSSVW-------- 553 (577)
T ss_dssp EEEEE-------------CCS--SCEEEEEECTTSSCEEEEE----TTSEEEEECTTSCEEEEEECCSSCEE--------
T ss_pred EEEEe-------------CCC--CCEEEEEEcCCCCEEEEEE----CcCEEEEEeCCCCEEEEEcCCCCCEE--------
Confidence 33222 221 2334577999999999987 7899999986432 12346666665
Q ss_pred CcccCCCCCEEEEEcCCCcEEEee
Q 002407 896 SSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 896 ~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
+++|+|||++|+||+.||+|++|+
T Consensus 554 ~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 554 GVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEcCCCCEEEEEeCCCEEEEeC
Confidence 468999999999999999999995
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-37 Score=366.88 Aligned_cols=436 Identities=13% Similarity=0.089 Sum_probs=308.5
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCC-EEEEEEcC--CCCEEEEEeCCCcEEEEecCcC--------ccc
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS-IWSIKFSL--DGRYLASAGEDCVIHVWQVVES--------ERK 491 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~-I~~vafSp--dG~~LaSgs~DgtVrVWdv~~~--------~~~ 491 (927)
.++.+. ++.|++|+..++.- .....+.+.+|.+. |++++|+| ++++||+|+.||.|+||++.++ ...
T Consensus 32 ~l~~~~-~~~v~v~~~~~~~~-~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~ 109 (615)
T 1pgu_A 32 AIAYPC-GKSAFVRCLDDGDS-KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVK 109 (615)
T ss_dssp EEEEEE-TTEEEEEECCSSCC-SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEE
T ss_pred EEEEec-CCeEEEEECCCCCC-ccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccccccc
Confidence 333333 66899999875510 11234667899999 99999999 9999999999999999999755 222
Q ss_pred ceeecccccCccccEEEEccCCCCCeecccccC----CceeeecccccccccccccCcccccceEeecCCCceEEEccCC
Q 002407 492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD----NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL 567 (927)
Q Consensus 492 ~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~ 567 (927)
.. ...+...+..+.|+|++.+++++..+ +.+ .+|+ .++.+..+.+|.
T Consensus 110 ~~-----~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v-----------------------~~~d-~~~~~~~~~~~~ 160 (615)
T 1pgu_A 110 SE-----FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF-----------------------ISWD-SGNSLGEVSGHS 160 (615)
T ss_dssp EE-----EECCSSCEEEEEECTTSSEEEEEECCSSCSEEE-----------------------EETT-TCCEEEECCSCS
T ss_pred ch-----hhcccccEEEEEEeCCCCEEEEeccCCCCccEE-----------------------EEEE-CCCcceeeecCC
Confidence 22 23566789999999999999887655 222 2333 456778889999
Q ss_pred CCEEEEEecCCc--EEEEEeCCCcEEEEeCCCCcEEEEEe-cCC---ceEEEEEccCC-CCEEEEEECCCcEEEEeCCCC
Q 002407 568 DDVLDLSWSKSQ--HLLSSSMDKTVRLWHLSSKTCLKIFS-HSD---YVTCIQFNPVD-DRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 568 ~~V~~l~~spd~--~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~---~V~~v~fsp~d-g~~L~sgs~Dg~I~IWDl~t~ 640 (927)
..|.+++|+|++ .|++++.|+.|++||+.+++++..+. |.. .|++++|+| + +++|++++.|+.|++||+.++
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~ 239 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSG 239 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTTC
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999994 79999999999999999999998887 888 899999999 7 999999999999999999999
Q ss_pred cEEEec-----cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 641 QVVDWN-----DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 641 ~~v~~~-----~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
+.+..+ .+...|.+++|+ ++.+|++++.|+.|++||+.+++....+.... ..+...+.++.|. ++. +
T Consensus 240 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~-~ 311 (615)
T 1pgu_A 240 EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK-----QQLGNQQVGVVAT-GNG-R 311 (615)
T ss_dssp CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT-----TCGGGCEEEEEEE-ETT-E
T ss_pred CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC-----CcccCceeEEEeC-CCC-e
Confidence 988876 778899999999 99999999999999999999988877654211 1234678888886 444 8
Q ss_pred EEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecC
Q 002407 716 VLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHC 795 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~ 795 (927)
+++++.|+.|++||............+...|.+++| |+ |++++.||.|++|++.. .. ..+........+..
T Consensus 312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~---~~--~~~~~~v~~~~~~~ 382 (615)
T 1pgu_A 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSSS---MH--QDHSNLIVSLDNSK 382 (615)
T ss_dssp EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTTE---EE--CCCCSCEEEEECCS
T ss_pred EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEchh---hc--CcccCceEEEEECC
Confidence 999999999999997764444444445566777776 65 55555666666665430 00 00000011111111
Q ss_pred CCeEEEEecC---------------------------------------------------------------CceeEEe
Q 002407 796 QDVSVAIPWP---------------------------------------------------------------GVGDTWG 812 (927)
Q Consensus 796 ~~v~vavs~~---------------------------------------------------------------g~~~i~~ 812 (927)
....++...+ +...+..
T Consensus 383 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (615)
T 1pgu_A 383 AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVG 462 (615)
T ss_dssp TTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEE
T ss_pred CcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEe
Confidence 1111111111 2222222
Q ss_pred ec-CCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccc---cc-cCCCce
Q 002407 813 LQ-DTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLT---AR-NRSPRT 887 (927)
Q Consensus 813 ~~-d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~---~~-~~s~v~ 887 (927)
.. ++.+..|+........ ..+.. .......++|+|++.+|++++ .|+.+.+|+....... .+ |..++.
T Consensus 463 ~~~d~~i~~~~~~~~~~~~-~~~~~--~~~~v~~~~~s~~g~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~h~~~v~ 535 (615)
T 1pgu_A 463 LEEGNTIQVFKLSDLEVSF-DLKTP--LRAKPSYISISPSETYIAAGD----VMGKILLYDLQSREVKTSRWAFRTSKIN 535 (615)
T ss_dssp ETTTSCEEEEETTEEEEEE-ECSSC--CSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTTEEEECCSCCCSSCEE
T ss_pred ecCCCeEEEEECCCccccc-cccCC--ccCceEEEEECCCCCEEEEcC----CCCeEEEeeCCCCcceeEeecCCCCcee
Confidence 22 4444444433221110 11111 123445678999999999987 7889999998644221 12 444444
Q ss_pred ecccCCCCCcccCC----------CCCEEEEEcCCCcEEEeecCC
Q 002407 888 SLDISNGISSSISA----------WGMVIVTAGLRGEIRAYQNFG 922 (927)
Q Consensus 888 s~~~~~~~~~a~S~----------dG~vLvTgs~DG~IrvW~~~g 922 (927)
+++|+| ++++||||+.||+|++|+...
T Consensus 536 --------~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 572 (615)
T 1pgu_A 536 --------AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 572 (615)
T ss_dssp --------EEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred --------EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCC
Confidence 479999 999999999999999999543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=399.53 Aligned_cols=441 Identities=18% Similarity=0.251 Sum_probs=338.1
Q ss_pred cCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecc
Q 002407 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (927)
Q Consensus 418 ~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~ 497 (927)
.....++++|..+++|++|+..+++ ..+++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.+..+
T Consensus 624 s~~~~~l~s~~~d~~i~vw~~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~--- 695 (1249)
T 3sfz_A 624 SQDGQRIASCGADKTLQVFKAETGE-----KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY--- 695 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCC-----EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE---
Confidence 3344567888999999999987664 34567899999999999999999999999999999999998877665
Q ss_pred cccCccccEEEEccCC--CCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEE
Q 002407 498 QEDGHLNMLLLANGSP--EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLS 574 (927)
Q Consensus 498 ~~~~~~~~v~~v~~sp--d~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~ 574 (927)
.++...+.++.|++ +..++++++.++.+ .+|++ .++.+..+.+|.+.|++++
T Consensus 696 --~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v-----------------------~vwd~~~~~~~~~~~~h~~~v~~~~ 750 (1249)
T 3sfz_A 696 --DEHSEQVNCCHFTNKSNHLLLATGSNDFFL-----------------------KLWDLNQKECRNTMFGHTNSVNHCR 750 (1249)
T ss_dssp --ECCSSCEEEEEECSSSSCCEEEEEETTSCE-----------------------EEEETTSSSEEEEECCCSSCEEEEE
T ss_pred --cCCCCcEEEEEEecCCCceEEEEEeCCCeE-----------------------EEEECCCcchhheecCCCCCEEEEE
Confidence 46778899999999 56678888888777 34444 3456778899999999999
Q ss_pred ecCC-cEEEEEeCCCcEEEEeCCCCcEEEEE-------------------------------------------------
Q 002407 575 WSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF------------------------------------------------- 604 (927)
Q Consensus 575 ~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~------------------------------------------------- 604 (927)
|+|+ ..|++++.|++|++||+.+++....+
T Consensus 751 ~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~ 830 (1249)
T 3sfz_A 751 FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG 830 (1249)
T ss_dssp ECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCC
T ss_pred EecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCC
Confidence 9998 78999999999999998776543332
Q ss_pred -------ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEE
Q 002407 605 -------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676 (927)
Q Consensus 605 -------~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~Iw 676 (927)
.|...|.+++|+| ++.++++++.|+.|++||+.++..+. ...|...|++++|+|++++|++++.|+.|++|
T Consensus 831 ~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw 909 (1249)
T 3sfz_A 831 LLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909 (1249)
T ss_dssp EEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEE
Confidence 3667899999999 99999999999999999999988775 45566899999999999999999999999999
Q ss_pred ECCCCeeeeeccc---------------------------c-cccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 677 NTSENKLQQKSPI---------------------------N-LQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 677 Dl~~~~~~~~~~i---------------------------~-~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
++.+......... . ........+...+++++|+|++. ++++++.+|.|++|
T Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~g~~~g~i~i~ 988 (1249)
T 3sfz_A 910 ETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE-YVAFGDEDGAIKII 988 (1249)
T ss_dssp EHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSS-EEEEEETTSCCEEE
T ss_pred EccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCC-EEEEEcCCCCEEEE
Confidence 9754211000000 0 00000112456799999999987 89999999999999
Q ss_pred ECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCce
Q 002407 729 DGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVG 808 (927)
Q Consensus 729 D~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~ 808 (927)
|............+...|.+++|+|++++|++++.||.|++|++.++.... ...+........+.+++..++.+.++.+
T Consensus 989 d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~l~~~~~dg~v 1067 (1249)
T 3sfz_A 989 ELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTV 1067 (1249)
T ss_dssp ETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSSEEEEEESSSEE
T ss_pred EcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCCcEEEEECCCcE
Confidence 976544444444567789999999999999999999999999999865432 2233333444556666667777777777
Q ss_pred eEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhcc---ccccCCC
Q 002407 809 DTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL---TARNRSP 885 (927)
Q Consensus 809 ~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~---~~~~~s~ 885 (927)
.+|....+.... .+.++. .....++|+|++.+|++++ .|+.+.+|+...... ..+|..+
T Consensus 1068 ~vwd~~~~~~~~------------~~~~~~--~~v~~~~~s~d~~~l~s~s----~d~~v~iwd~~~~~~~~~l~~h~~~ 1129 (1249)
T 3sfz_A 1068 KVWNVITGRIER------------DFTCHQ--GTVLSCAISSDATKFSSTS----ADKTAKIWSFDLLSPLHELKGHNGC 1129 (1249)
T ss_dssp EEEETTTTCCCE------------EEECCS--SCCCCEEECSSSSSCEEEC----CSSCCCEECSSSSSCSBCCCCCSSC
T ss_pred EEEECCCCceeE------------EEcccC--CcEEEEEECCCCCEEEEEc----CCCcEEEEECCCcceeeeeccCCCc
Confidence 777765443211 111111 2344567999999999987 788999999764321 2344444
Q ss_pred ceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 886 RTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 886 v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
+. +++|+|+|++||||+.||+|++|+.
T Consensus 1130 v~--------~~~~s~dg~~lat~~~dg~i~vwd~ 1156 (1249)
T 3sfz_A 1130 VR--------CSAFSLDGILLATGDDNGEIRIWNV 1156 (1249)
T ss_dssp EE--------EEEECSSSSEEEEEETTSCCCEEES
T ss_pred EE--------EEEECCCCCEEEEEeCCCEEEEEEC
Confidence 43 4799999999999999999999994
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-37 Score=340.47 Aligned_cols=291 Identities=20% Similarity=0.314 Sum_probs=248.8
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
.++|.+|.+.|++|+|+|++++|++|+.||+|+|||+.+++....+ ..+...+..++|+|++.++++++.++.+.
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-----PLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-----ECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe-----ecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence 4678999999999999999999999999999999999988766654 34567799999999999999998888774
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~ 607 (927)
.+...... ...+....+.+|.+.|.++.|++++.|++++.|++|++||+.+++++..+. |.
T Consensus 123 iw~~~~~~------------------~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~ 184 (340)
T 1got_B 123 IYNLKTRE------------------GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184 (340)
T ss_dssp EEETTTCS------------------BSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EEECccCC------------------CcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCC
Confidence 43321100 011345678899999999999999999999999999999999999998887 99
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
..|.+++|+| ++++|++|+.|+.|++||+++++++.. ..|...|++++|+|++++|++|+.|+.|++||+++++....
T Consensus 185 ~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~ 263 (340)
T 1got_B 185 GDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263 (340)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 9999999999 999999999999999999999887764 45678999999999999999999999999999998876655
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCc
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
+.. ..+...|++++|+|++. +|++++.|+.|++||............|...|.+++|+|+|++|++|+.|+.
T Consensus 264 ~~~-------~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 264 YSH-------DNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp ECC-------TTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred Ecc-------CCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCcc
Confidence 321 23445799999999987 8999999999999997654444444456788999999999999999999999
Q ss_pred EEEEE
Q 002407 767 VYVWK 771 (927)
Q Consensus 767 I~IWd 771 (927)
|+|||
T Consensus 336 i~iWd 340 (340)
T 1got_B 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=344.93 Aligned_cols=283 Identities=23% Similarity=0.383 Sum_probs=250.0
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
..+.+|.++|++|+|+|++++||+|+.||+|+|||+.+++....+ .+|...|..++|+|++.++++++.++.+.
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-----~~h~~~V~~v~~~~~~~~l~sgs~D~~i~- 175 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-----KGHTDSVQDISFDHSGKLLASCSADMTIK- 175 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCCC-
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-----eccCCcEEEEEEcCCCCEEEEEeCCCeEE-
Confidence 457899999999999999999999999999999999998876665 56788999999999999999999988873
Q ss_pred ecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h 606 (927)
+|++. .+.+..+.+|...|.+++|+|+ .+|++++.|++|++||+.++.++..+. |
T Consensus 176 ----------------------iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h 233 (410)
T 1vyh_C 176 ----------------------LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH 233 (410)
T ss_dssp ----------------------EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred ----------------------EEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC
Confidence 44443 3567788999999999999998 789999999999999999999998887 9
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCC--------------------CCEEE
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPD--------------------GQGAL 665 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spd--------------------g~~l~ 665 (927)
...|.++.|+| ++.+|++|+.|+.|++||+.++++.. +..|...|.+++|+|+ +.+|+
T Consensus 234 ~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 312 (410)
T 1vyh_C 234 REWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL 312 (410)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE
T ss_pred CccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEE
Confidence 99999999999 99999999999999999999988765 4466789999999996 67899
Q ss_pred EEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecCC
Q 002407 666 VGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNT 743 (927)
Q Consensus 666 tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~ 743 (927)
+|+.|+.|++||+.++.....+ .+|...|++++|+|++. +|++++.|+.|++||... ....+. .|.
T Consensus 313 sgs~D~~i~iwd~~~~~~~~~~---------~~h~~~v~~v~~~~~g~-~l~s~s~D~~i~vwd~~~~~~~~~~~--~h~ 380 (410)
T 1vyh_C 313 SGSRDKTIKMWDVSTGMCLMTL---------VGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLN--AHE 380 (410)
T ss_dssp EEETTSEEEEEETTTTEEEEEE---------ECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSCCCEEEE--CCS
T ss_pred EEeCCCeEEEEECCCCceEEEE---------ECCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceEEEEc--CCC
Confidence 9999999999999999877664 37889999999999887 799999999999999654 344444 456
Q ss_pred cceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 744 NSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 744 ~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
..|.+++|+|++.+|++|+.|+.|+||+++
T Consensus 381 ~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 381 HFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 789999999999999999999999999864
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=332.65 Aligned_cols=294 Identities=20% Similarity=0.291 Sum_probs=246.3
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
.++|.+|.+.|++|+|+|++++||||+.||+|+|||..+++....+ ..+...+..++|+|++..+++++.++.+.
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-----~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-----TMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----ECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-----ecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence 3577999999999999999999999999999999999887766554 34556788999999999999999988875
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h 606 (927)
.+........ ........+.+|...|.+++|+|+ ..|++++.|++|++||+.+++++..+. |
T Consensus 132 v~~~~~~~~~----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h 195 (354)
T 2pbi_B 132 VYPLTFDKNE----------------NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGH 195 (354)
T ss_dssp EEECCCCTTC----------------CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEEeccccc----------------cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC
Confidence 5432210000 011345567789999999999998 689999999999999999999998887 9
Q ss_pred CCceEEEEEccC-CCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeee
Q 002407 607 SDYVTCIQFNPV-DDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 607 ~~~V~~v~fsp~-dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
...|.+++|+|. ++++|++|+.|+.|++||+++++++..+ .|...|++++|+|++.+|++++.|++|++||++.....
T Consensus 196 ~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~ 275 (354)
T 2pbi_B 196 GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275 (354)
T ss_dssp SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 999999999883 3689999999999999999999887654 56689999999999999999999999999999988765
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECC
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASED 764 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D 764 (927)
..+.. ..+...+++++|+|++. +|++++.|+.|+|||............|...|.+++|+|+|++|++|+.|
T Consensus 276 ~~~~~-------~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 276 AIYSK-------ESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp EEECC-------TTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEEcC-------CCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence 54321 23445789999999987 89999999999999976544444444567889999999999999999999
Q ss_pred CcEEEEE
Q 002407 765 SYVYVWK 771 (927)
Q Consensus 765 g~I~IWd 771 (927)
+.|+||+
T Consensus 348 ~~v~vW~ 354 (354)
T 2pbi_B 348 HTLRVWA 354 (354)
T ss_dssp SEEEEEC
T ss_pred CCEEecC
Confidence 9999995
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=326.22 Aligned_cols=287 Identities=19% Similarity=0.327 Sum_probs=248.7
Q ss_pred eEeecCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCC
Q 002407 450 QEIQAHNGSIWSIKFSLD----GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpd----G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~ 525 (927)
+.+++|.+.|++|+|+|+ +.+||||+.|++|+||++........ ....+|...|.++.+++++.++++++.++
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~---~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ---WSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE---EEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee---eeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 556899999999999985 67999999999999999977643222 12367888999999999999999999888
Q ss_pred ceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEE
Q 002407 526 HLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKI 603 (927)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~ 603 (927)
.+ .+|++ .++.+..+..|...+.+++|+|+ .+|++++.|+.|++|++.+++....
T Consensus 103 ~i-----------------------~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 103 HI-----------------------RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp EE-----------------------EEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE
T ss_pred cE-----------------------EEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE
Confidence 87 44554 34667788889999999999999 7899999999999999999998887
Q ss_pred Ee-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCC
Q 002407 604 FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 604 ~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~ 681 (927)
+. |...|.+++|+| ++++|++++.|+.|++||+.+++++..+ .+...|.+++|+|++++|++|+.|+.|++||++++
T Consensus 160 ~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 160 LDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp EECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred ecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence 76 888999999999 9999999999999999999999887654 46678999999999999999999999999999988
Q ss_pred eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEE
Q 002407 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasg 761 (927)
.....+ ..|...|++++|+|++. +|++++.|++|+|||............+...|.+++|+|++++|+++
T Consensus 239 ~~~~~~---------~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~ 308 (321)
T 3ow8_A 239 NLAGTL---------SGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSV 308 (321)
T ss_dssp CEEEEE---------CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ceeEEE---------cCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence 776654 47899999999999987 89999999999999987665555555667889999999999999999
Q ss_pred ECCCcEEEEECC
Q 002407 762 SEDSYVYVWKYE 773 (927)
Q Consensus 762 s~Dg~I~IWdl~ 773 (927)
+.|+.|+|||+.
T Consensus 309 ~~d~~i~vwd~p 320 (321)
T 3ow8_A 309 GDDQEIHIYDCP 320 (321)
T ss_dssp ETTCCEEEEECC
T ss_pred eCCCeEEEEeCC
Confidence 999999999963
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-35 Score=377.71 Aligned_cols=458 Identities=19% Similarity=0.229 Sum_probs=339.7
Q ss_pred CCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEecCcCcccceeec
Q 002407 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGELLE 496 (927)
Q Consensus 419 d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp--dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~ 496 (927)
....+++++..++.|++|+..+++. .+.+.+|.+.|++++|+| ++.+|++|+.|+.|++||+.+++....+
T Consensus 667 ~~~~~l~s~~~d~~v~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~-- 739 (1249)
T 3sfz_A 667 SDDSYIATCSADKKVKIWDSATGKL-----VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM-- 739 (1249)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCE-----EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE--
T ss_pred cCCCEEEEEeCCCeEEEEECCCCce-----EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee--
Confidence 3345788899999999999876643 456789999999999999 5569999999999999999998876664
Q ss_pred ccccCccccEEEEccCCCCCeecccccCCceeeeccccccccccc-------------------------ccCccc----
Q 002407 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSL-------------------------SLDHMV---- 547 (927)
Q Consensus 497 ~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~-------------------------~~~~~~---- 547 (927)
.+|...+..+.|+|++..+++++.++.+..+..........+ ..+...
T Consensus 740 ---~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1249)
T 3sfz_A 740 ---FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA 816 (1249)
T ss_dssp ---CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE
T ss_pred ---cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE
Confidence 467788999999999999999999998877754332111110 000000
Q ss_pred --ccceEeecC-CCceEEE-ccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCC
Q 002407 548 --VPETVFALS-DKPICSF-QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDR 621 (927)
Q Consensus 548 --~~~~v~~~s-~k~i~~l-~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~ 621 (927)
....+|+.. +..+..+ .+|...|.+++|+|+ ..+++++.|+.|++||+.++..+..+. |...|++++|+| +++
T Consensus 817 ~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~ 895 (1249)
T 3sfz_A 817 AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGS 895 (1249)
T ss_dssp ETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSS
T ss_pred cCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC-CCC
Confidence 011233332 2333333 389999999999998 789999999999999999999888876 999999999999 999
Q ss_pred EEEEEECCCcEEEEeCCC--------------------------------------------------------------
Q 002407 622 YFISGSLDAKVRIWSIPE-------------------------------------------------------------- 639 (927)
Q Consensus 622 ~L~sgs~Dg~I~IWDl~t-------------------------------------------------------------- 639 (927)
+|++++.|+.|++|++.+
T Consensus 896 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~ 975 (1249)
T 3sfz_A 896 SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEY 975 (1249)
T ss_dssp EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSE
T ss_pred EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCE
Confidence 999999999999998532
Q ss_pred -----------------CcEE-EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCC
Q 002407 640 -----------------RQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQR 701 (927)
Q Consensus 640 -----------------~~~v-~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~ 701 (927)
++.+ ....|...|++++|+|++++|++++.||.|++||+.++..... ..|..
T Consensus 976 l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~----------~~~~~ 1045 (1249)
T 3sfz_A 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL----------QAHQE 1045 (1249)
T ss_dssp EEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECC----------BCCSS
T ss_pred EEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEE----------ecCCC
Confidence 1111 1233556789999999999999999999999999999876643 37889
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 702 KITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
.|.+++|+|++ .+++++.|+.|++||... ....+.. +...+.+++|+|++++|++++.|+.|++||+.++....
T Consensus 1046 ~v~~~~~~~~~--~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~ 1121 (1249)
T 3sfz_A 1046 TVKDFRLLQDS--RLLSWSFDGTVKVWNVITGRIERDFTC--HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1121 (1249)
T ss_dssp CEEEEEECSSS--EEEEEESSSEEEEEETTTTCCCEEEEC--CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSB
T ss_pred cEEEEEEcCCC--cEEEEECCCcEEEEECCCCceeEEEcc--cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceee
Confidence 99999999965 689999999999999654 4444444 56778999999999999999999999999999887766
Q ss_pred cccccceeeeeeeecCCCeEEE-EecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEe
Q 002407 780 RSKSITVTHSYEHFHCQDVSVA-IPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSA 858 (927)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~v~va-vs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasa 858 (927)
....+........|++++..++ .+.+|.+.+|....+....... +........ .....+..++|||++.+|+++
T Consensus 1122 ~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~--~~~~~v~~l~fs~dg~~l~s~ 1196 (1249)
T 3sfz_A 1122 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCA---PISVEEGTA--THGGWVTDVCFSPDSKTLVSA 1196 (1249)
T ss_dssp CCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCC---CCC---------CCSCCCEEEECTTSSCEEEE
T ss_pred eeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEec---ccccccccc--ccCceEEEEEECCCCCEEEEC
Confidence 6655555555566666654444 4456777777655433211100 000000001 112345667899999999986
Q ss_pred ccccccCccccccCchhhccc---cccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 859 TNSYFFDRISATWPEEKLVLT---ARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 859 s~~~~~d~~v~~W~~e~l~~~---~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
+ +.+.+|+....... ..|..++. +++|+|||++|++++.||.|++|+.
T Consensus 1197 ~------g~v~vwd~~~g~~~~~~~~~~~~i~--------~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1197 G------GYLKWWNVATGDSSQTFYTNGTNLK--------KIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp S------SSEEEBCSSSCBCCCCCCCSSCCCC--------CCEECSSSCCEEEECTTCCEEEECC
T ss_pred C------CeEEEEECCCCceeeeeeccCCccc--------EEEECCCCCEEEEecCCcEEEEEee
Confidence 4 68999997643221 12222222 5799999999999999999999983
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=338.86 Aligned_cols=308 Identities=19% Similarity=0.338 Sum_probs=250.8
Q ss_pred eeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCC
Q 002407 446 LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (927)
Q Consensus 446 l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~ 525 (927)
+.+.++|.+|.+.|++|+|+|++++||||+.|++|+|||+.+++....+ ..+...+..++|+|++.++++++.++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-----~~h~~~v~~~~~s~~g~~las~~~d~ 130 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-----KLHCPWVMECAFAPNGQSVACGGLDS 130 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-----ECCCTTCCCCEECTTSSEEEECCSSS
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE-----ecCCCCEEEEEECCCCCEEEEeeCCC
Confidence 3455778999999999999999999999999999999999988776665 35667788999999999999999998
Q ss_pred ceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEE
Q 002407 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKI 603 (927)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~ 603 (927)
.+..+........ .........+.+|.+.|.++.|+|+ ..|++++.|++|++||+.+++++..
T Consensus 131 ~v~iw~~~~~~~~---------------~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 131 ACSIFNLSSQADR---------------DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp CCEEEECCCCSSC---------------CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred cEEEEECCCCccc---------------cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence 8755433211000 0011234567899999999999996 5699999999999999999999888
Q ss_pred E------ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEE-EeccCCCcEEEEEECCCCCEEEEEECCCeEEE
Q 002407 604 F------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675 (927)
Q Consensus 604 ~------~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v-~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~I 675 (927)
+ .|...|.+++|+|.++++|++|+.|+.|++||++. .+.+ .+..|...|++++|+|++++|++|+.|++|++
T Consensus 196 ~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~l 275 (380)
T 3iz6_a 196 FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRL 275 (380)
T ss_dssp ECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEE
T ss_pred eecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEE
Confidence 7 28889999999887889999999999999999974 3443 45667789999999999999999999999999
Q ss_pred EECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEe----ecCCcceEEEEE
Q 002407 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKG----FRNTNSQISASL 751 (927)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~----~~~~~~v~sv~f 751 (927)
||++++.....+.... .....+...|++++|+|++. +|++++.|+.|++||.......... ..|...|.+++|
T Consensus 276 wd~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 352 (380)
T 3iz6_a 276 FDMRTGHQLQVYNREP--DRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL 352 (380)
T ss_dssp EETTTTEEEEEECCCC--SSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred EECCCCcEEEEecccc--cccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE
Confidence 9999998776653211 11122344589999999987 8999999999999996544333322 346778999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCC
Q 002407 752 TANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 752 spdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
+|+|++|++|+.|+.|+||++....
T Consensus 353 s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 353 SSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999999999999999998653
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=317.77 Aligned_cols=256 Identities=15% Similarity=0.230 Sum_probs=218.6
Q ss_pred eeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 448 ~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
..++|.+|.+.|++|+|+|++++||+|+.||+|+|||+.++..
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~------------------------------------- 47 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE------------------------------------- 47 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------------------------------
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-------------------------------------
Confidence 3467899999999999999999999999999999999876532
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS- 605 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~- 605 (927)
+..+.+|...|.+++|+|+ .+|++++.|++|++||+.+++++..+.
T Consensus 48 --------------------------------~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 95 (304)
T 2ynn_A 48 --------------------------------VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95 (304)
T ss_dssp --------------------------------EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred --------------------------------eEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeC
Confidence 2345578899999999998 789999999999999999999998887
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc-EEE-eccCCCcEEEEEECC-CCCEEEEEECCCeEEEEECCCCe
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-VVD-WNDLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~-~v~-~~~~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~ 682 (927)
|...|.+++|+| ++.+|++|+.|++|++||+.++. +.. ...|...|.+++|+| ++.+|++|+.|+.|++||+....
T Consensus 96 h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~ 174 (304)
T 2ynn_A 96 HPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174 (304)
T ss_dssp CSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS
T ss_pred CCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999999999999 99999999999999999998874 333 456778999999999 67899999999999999998766
Q ss_pred eeeecccccccccccCCCCCeEEEEEcCC-CCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEE
Q 002407 683 LQQKSPINLQNKKKRSHQRKITGFQFAPG-SSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 683 ~~~~~~i~~~~~~~~~h~~~Vtsl~fspd-g~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasg 761 (927)
...... ..+...+..+.|.|. ...+|++++.|++|+|||............|...|..++|+|++++|+++
T Consensus 175 ~~~~~~--------~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 246 (304)
T 2ynn_A 175 PNFTLT--------TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246 (304)
T ss_dssp CSEEEE--------CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred ccceec--------cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEE
Confidence 544332 356678999999873 22489999999999999987655555555567789999999999999999
Q ss_pred ECCCcEEEEECCCCCCcccc
Q 002407 762 SEDSYVYVWKYEAESRPSRS 781 (927)
Q Consensus 762 s~Dg~I~IWdl~s~~~~~~~ 781 (927)
+.||.|+|||+.+.+.....
T Consensus 247 s~Dg~i~iWd~~~~~~~~~~ 266 (304)
T 2ynn_A 247 SEDGTLKIWNSSTYKVEKTL 266 (304)
T ss_dssp ETTSCEEEEETTTCCEEEEE
T ss_pred cCCCeEEEEECCCCceeeec
Confidence 99999999999987654443
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=343.82 Aligned_cols=437 Identities=16% Similarity=0.180 Sum_probs=320.2
Q ss_pred CCCeEEEccCceEEEEeccCccccc---ceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEecCcCcccc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLT---ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED----CVIHVWQVVESERKG 492 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~---~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~D----gtVrVWdv~~~~~~~ 492 (927)
...+++++..++.|++|+..++... .....+.+.+|...|.+++|+|++++|++++.+ +.|++|+ .++...
T Consensus 77 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~ 154 (615)
T 1pgu_A 77 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG 154 (615)
T ss_dssp TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE
T ss_pred CCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce
Confidence 3456788888999999998644100 123446778999999999999999999999988 6888888 344333
Q ss_pred eeecccccCccccEEEEccCCCCC-eecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCC--
Q 002407 493 ELLEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLD-- 568 (927)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~spd~~-~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~-- 568 (927)
.+ .++...+..+.|+|++. .++++..++.+. +|+. ..+.+..+.+|..
T Consensus 155 ~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~-----------------------vwd~~~~~~~~~~~~~~~~~ 206 (615)
T 1pgu_A 155 EV-----SGHSQRINACHLKQSRPMRSMTVGDDGSVV-----------------------FYQGPPFKFSASDRTHHKQG 206 (615)
T ss_dssp EC-----CSCSSCEEEEEECSSSSCEEEEEETTTEEE-----------------------EEETTTBEEEEEECSSSCTT
T ss_pred ee-----ecCCccEEEEEECCCCCcEEEEEeCCCcEE-----------------------EEeCCCcceeeeecccCCCC
Confidence 32 46778899999999987 788887887774 3333 2356778889999
Q ss_pred -CEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEE-----ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC
Q 002407 569 -DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIF-----SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 569 -~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~-----~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~ 640 (927)
.|++++|+|+ .+|++++.|+.|++||+.+++.+..+ .|...|.+++|+ ++.+|++++.|+.|++||+.++
T Consensus 207 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp CCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTT
T ss_pred ceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCC
Confidence 9999999998 46899999999999999999999998 799999999999 8899999999999999999999
Q ss_pred cEEEeccCC-----CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccc-----------------------
Q 002407 641 QVVDWNDLH-----EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ----------------------- 692 (927)
Q Consensus 641 ~~v~~~~~~-----~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~----------------------- 692 (927)
+.+..+..+ ..+.++.|. ++.++++++.++.|++||+.+++....+.....
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 285 KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWS 363 (615)
T ss_dssp EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETT
T ss_pred cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEE
Confidence 887765544 678888885 899999999999999999988766544321000
Q ss_pred --cccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce---------------------------------EEE
Q 002407 693 --NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV---------------------------------HKF 737 (927)
Q Consensus 693 --~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~---------------------------------~~~ 737 (927)
... ..|...|++++|.+ +. .|++++.|+.|++||..... ..+
T Consensus 364 ~~~~~-~~~~~~v~~~~~~~-~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (615)
T 1pgu_A 364 SSSMH-QDHSNLIVSLDNSK-AQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 440 (615)
T ss_dssp TTEEE-CCCCSCEEEEECCS-TT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred chhhc-CcccCceEEEEECC-Cc-EEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCcee
Confidence 000 34666777777733 33 68888888888888743210 111
Q ss_pred EeecCCcceEEEEEecCCCEEEEEEC-CCcEEEEECCCCCCc-ccccccceeeeeeeecCCCeEEE-EecCCceeEEeec
Q 002407 738 KGFRNTNSQISASLTANGRYVVSASE-DSYVYVWKYEAESRP-SRSKSITVTHSYEHFHCQDVSVA-IPWPGVGDTWGLQ 814 (927)
Q Consensus 738 ~~~~~~~~v~sv~fspdg~~Lasgs~-Dg~I~IWdl~s~~~~-~~~~~~~~~~~~~~~~~~~v~va-vs~~g~~~i~~~~ 814 (927)
....+...+.+++|+ +++|++++. |+.|++|++.+.... .....+........|++++..++ ...++.+.+|...
T Consensus 441 ~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 518 (615)
T 1pgu_A 441 KSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ 518 (615)
T ss_dssp EEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCC
Confidence 112245678888888 889999999 999999999875432 22222333344455555544444 3355666666654
Q ss_pred CCceeeccccCCCCCcceeccCCCcccCcceeeecC----------CCCeEEEeccccccCccccccCchhh-c---ccc
Q 002407 815 DTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSP----------LNGTISSATNSYFFDRISATWPEEKL-V---LTA 880 (927)
Q Consensus 815 d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSP----------dg~~Lasas~~~~~d~~v~~W~~e~l-~---~~~ 880 (927)
....... +.+ .....+..++|+| ++.+|++++ .|+.+++|+.+.. . ...
T Consensus 519 ~~~~~~~------------~~~-~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~ 581 (615)
T 1pgu_A 519 SREVKTS------------RWA-FRTSKINAISWKPAEKGANEEEIEEDLVATGS----LDTNIFIYSVKRPMKIIKALN 581 (615)
T ss_dssp TTEEEEC------------CSC-CCSSCEEEEEECCCC------CCSCCEEEEEE----TTSCEEEEESSCTTCCEEETT
T ss_pred CCcceeE------------eec-CCCCceeEEEEcCccccccccccCCCEEEEEc----CCCcEEEEECCCCceechhhh
Confidence 4332111 111 0113345578999 999999987 7899999998643 1 133
Q ss_pred ccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 881 RNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 881 ~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
+|..++. +++|+|+|+ |+|++.||+|++|+.
T Consensus 582 ~h~~~v~--------~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 582 AHKDGVN--------NLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp SSTTCEE--------EEEEEETTE-EEEEETTSCEEEEEE
T ss_pred cCccceE--------EEEEcCCCC-eEEecCCceEEEEee
Confidence 4555554 469999999 999999999999984
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=320.85 Aligned_cols=255 Identities=22% Similarity=0.358 Sum_probs=208.2
Q ss_pred eeeeEeecCCCCEEEEEE-----cC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecc
Q 002407 447 YKCQEIQAHNGSIWSIKF-----SL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSP 520 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vaf-----Sp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~ 520 (927)
...+.|.+|.+.|++|+| ++ ++++||||+.|++|+|||+.+.+....
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~--------------------------- 64 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY--------------------------- 64 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB---------------------------
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc---------------------------
Confidence 345678999999999999 77 999999999999999999865431110
Q ss_pred cccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc
Q 002407 521 KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT 599 (927)
Q Consensus 521 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~ 599 (927)
.+.+...+.+|...|.+++|+|+ .+|++++.|++|+|||+.+++
T Consensus 65 -----------------------------------~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~ 109 (343)
T 2xzm_R 65 -----------------------------------FGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT 109 (343)
T ss_dssp -----------------------------------SEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC
T ss_pred -----------------------------------cccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence 01234567899999999999998 789999999999999999999
Q ss_pred EEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec---cCCCcEEEEEECCCC----------CEEE
Q 002407 600 CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN---DLHEMVTAACYTPDG----------QGAL 665 (927)
Q Consensus 600 ~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~---~~~~~V~sla~spdg----------~~l~ 665 (927)
++..+. |...|.+++|+| ++++|++++.|+.|++||+......... .+...|.+++|+|++ .+|+
T Consensus 110 ~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~ 188 (343)
T 2xzm_R 110 TYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188 (343)
T ss_dssp EEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEE
T ss_pred EEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEE
Confidence 988886 999999999999 9999999999999999999865544433 566789999999987 7999
Q ss_pred EEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcc
Q 002407 666 VGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNS 745 (927)
Q Consensus 666 tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~ 745 (927)
+++.|+.|++||.. ......+ ..|...|++++|+|++. +|++++.|+.|+|||................
T Consensus 189 s~~~d~~i~iwd~~-~~~~~~~---------~~h~~~v~~~~~s~~g~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~ 257 (343)
T 2xzm_R 189 SVGWDGRLKVWNTN-FQIRYTF---------KAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILNLTYPQREFDAGST 257 (343)
T ss_dssp EEETTSEEEEEETT-TEEEEEE---------ECCSSCEEEEEECTTSS-EEEEEETTCEEEEEESSCCSSCSEEEECSSC
T ss_pred EEcCCCEEEEEcCC-CceeEEE---------cCccccceEEEECCCCC-EEEEEcCCCeEEEEECCCCcccceeecCCCc
Confidence 99999999999953 3433332 47889999999999987 8999999999999997332111111223456
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 746 QISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 746 v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
+.+++|+|++.+|+++ .|+.|+||++.+..
T Consensus 258 v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 258 INQIAFNPKLQWVAVG-TDQGVKIFNLMTQS 287 (343)
T ss_dssp EEEEEECSSSCEEEEE-ESSCEEEEESSSCC
T ss_pred EEEEEECCCCCEEEEE-CCCCEEEEEeCCCC
Confidence 9999999999888765 57889999997643
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=359.88 Aligned_cols=455 Identities=12% Similarity=0.092 Sum_probs=310.9
Q ss_pred ecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeec
Q 002407 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (927)
Q Consensus 417 ~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~ 496 (927)
.+....++++|..++.|++|+....+.. .. ..|...|++|+|+| |++||+++.|++|+|||+.+++.+..+.
T Consensus 25 fspdg~~lAsgs~Dg~I~lw~~~~~~~~-----~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~- 96 (902)
T 2oaj_A 25 FDFTQNLLAIATVTGEVHIYGQQQVEVV-----IK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF- 96 (902)
T ss_dssp EETTTTEEEEEETTSEEEEECSTTCEEE-----EE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCcEEE-----EE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-
Confidence 3334467889999999999987654331 12 35889999999999 8899999999999999999987766652
Q ss_pred ccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEec
Q 002407 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (927)
Q Consensus 497 ~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~s 576 (927)
+...+.++.|+|++.+++++..++.+..+........ ...... ++ +....+.+|.+.|++++|+
T Consensus 97 -----~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~------~~----~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 97 -----VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDN------LQ----KSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp -----CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECC------HH----HHHTCSSSCCCCCCEEEEE
T ss_pred -----CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceecc------cc----ccccccccCCCCeEEEEEc
Confidence 3357899999999999999999988855443221100 000000 00 0002346899999999999
Q ss_pred CC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-c------------------CCceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 577 KS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-H------------------SDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 577 pd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h------------------~~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
|+ +.|++++.|++| +||+.+++++..+. | ...|++++|+| ++.+|++++.|+.|++|
T Consensus 161 p~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lW 238 (902)
T 2oaj_A 161 PRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFW 238 (902)
T ss_dssp TTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEE
T ss_pred cCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEE
Confidence 96 689999999999 99999999988876 3 37799999999 99999999999999999
Q ss_pred eCCCCcEEEe--c-----------------cCCCcEEEEEEC----CCC-CEEEEEECC-----CeEEEEECCC------
Q 002407 636 SIPERQVVDW--N-----------------DLHEMVTAACYT----PDG-QGALVGSYK-----GSCHLYNTSE------ 680 (927)
Q Consensus 636 Dl~t~~~v~~--~-----------------~~~~~V~sla~s----pdg-~~l~tgs~D-----g~I~IwDl~~------ 680 (927)
|+.+++++.. + .+...|++++|+ |++ .+|++|+.+ ..+.+|++..
T Consensus 239 d~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~ 318 (902)
T 2oaj_A 239 DANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSI 318 (902)
T ss_dssp ETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGG
T ss_pred ECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccc
Confidence 9999887653 1 123479999995 444 467777665 3788998531
Q ss_pred ------------CeeeeecccccccccccCCCCCeEEEEEcCC---------CCcEEEEEECCCcEEEEECCcceEEEE-
Q 002407 681 ------------NKLQQKSPINLQNKKKRSHQRKITGFQFAPG---------SSSEVLVTSADSRIRVVDGIDLVHKFK- 738 (927)
Q Consensus 681 ------------~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd---------g~~~Llsgs~Dg~I~VwD~~~~~~~~~- 738 (927)
.+....+. ..+...|..+++.++ +...+++++.|+.|++||.........
T Consensus 319 ~s~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~ 390 (902)
T 2oaj_A 319 TSYEGMKNYYANPKQMKIFP--------LPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKA 390 (902)
T ss_dssp CCHHHHHHHHHSCSEEEEEC--------CSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCG
T ss_pred cchhhhhhhhcCccceEEEe--------cCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccc
Confidence 11111111 135678889988762 233788889999999999633211110
Q ss_pred --------e--------------------------------ecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 739 --------G--------------------------------FRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 739 --------~--------------------------------~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
. ..+...+..++|+|++++|++|+.|++|++||+.++...
T Consensus 391 ~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~ 470 (902)
T 2oaj_A 391 SLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQ 470 (902)
T ss_dssp GGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTT
T ss_pred ccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcccc
Confidence 0 011223344567899999999999999999999987432
Q ss_pred cc--c---------cccceeeeeeeecCCCeEEEE-ecCCceeEEeecCCceee--------------------------
Q 002407 779 SR--S---------KSITVTHSYEHFHCQDVSVAI-PWPGVGDTWGLQDTYLDE-------------------------- 820 (927)
Q Consensus 779 ~~--~---------~~~~~~~~~~~~~~~~v~vav-s~~g~~~i~~~~d~~i~~-------------------------- 820 (927)
.. . ..+........|++++..+|+ +.+|++.+|.........
T Consensus 471 ~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (902)
T 2oaj_A 471 DNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVL 550 (902)
T ss_dssp TTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSE
T ss_pred CCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccc
Confidence 10 0 022223455667766555553 566788888765442100
Q ss_pred --ccccCCC-----CCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccc---------cccCC
Q 002407 821 --FSTANHP-----PTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLT---------ARNRS 884 (927)
Q Consensus 821 --~~~~~~~-----~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~---------~~~~s 884 (927)
+.....+ ..+...+.++. ..+..++||||| +||+++ .|+.+++|+.+..... .+|..
T Consensus 551 ~~~~~~~~~~~~~g~~~~~~l~~h~--~~V~svafSpdG-~lAsgs----~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~ 623 (902)
T 2oaj_A 551 VDVRDRAPTGVRQGFMPSTAVHANK--GKTSAINNSNIG-FVGIAY----AAGSLMLIDRRGPAIIYMENIREISGAQSA 623 (902)
T ss_dssp EECGGGCCTTCSEEEEEEEEECCCS--CSEEEEEECBTS-EEEEEE----TTSEEEEEETTTTEEEEEEEGGGTCSSCCC
T ss_pred ccccccCCCCCCCccceeEEEEcCC--CcEEEEEecCCc-EEEEEe----CCCcEEEEECCCCeEEEEeehhHhcccccc
Confidence 0000000 01122233332 344567899999 999987 7899999997643221 14444
Q ss_pred CceecccCCCCCcccC-----CCC---CEEEEEcCCCcEEEeec
Q 002407 885 PRTSLDISNGISSSIS-----AWG---MVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 885 ~v~s~~~~~~~~~a~S-----~dG---~vLvTgs~DG~IrvW~~ 920 (927)
.+. +++|| ||| ++|++|+.||+|++|+.
T Consensus 624 ~V~--------sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 624 CVT--------CIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp CEE--------EEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred ceE--------EEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 444 46888 886 89999999999999985
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=323.11 Aligned_cols=307 Identities=19% Similarity=0.315 Sum_probs=240.2
Q ss_pred eeeeeEeecCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccC
Q 002407 446 LYKCQEIQAHNG-SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 446 l~~~q~L~gH~~-~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
+.+.++|++|.+ .|++|+|+|+|++||+|+.|++|+||++.++...... ....+|...|..++|+|++.+|++++.+
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~--~~~~~h~~~v~~~~~sp~g~~l~s~s~D 82 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS--VLSEGHQRTVRKVAWSPCGNYLASASFD 82 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEE--EECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeee--eeccccCCcEEEEEECCCCCEEEEEECC
Confidence 345578899998 9999999999999999999999999999876533221 1135788899999999999999999988
Q ss_pred CceeeecccccccccccccCcccccceEeecCC---CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc-
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSD---KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT- 599 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~---k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~- 599 (927)
+.+. +|+... +.+..+.+|...|.+++|+|+ .+|++++.|++|++||+.++.
T Consensus 83 ~~v~-----------------------iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 83 ATTC-----------------------IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp SCEE-----------------------EEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred CcEE-----------------------EEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence 8774 333322 346788999999999999998 789999999999999998764
Q ss_pred --EEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE---EeccCCCcEEEEEECCCCCEEEEEECCCeE
Q 002407 600 --CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV---DWNDLHEMVTAACYTPDGQGALVGSYKGSC 673 (927)
Q Consensus 600 --~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v---~~~~~~~~V~sla~spdg~~l~tgs~Dg~I 673 (927)
++..+. |...|.+++|+| ++.+|++++.|+.|++||+.+++.. ....|...|++++|+|+|++|++++.|++|
T Consensus 140 ~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v 218 (345)
T 3fm0_A 140 YECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTV 218 (345)
T ss_dssp EEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeE
Confidence 344444 899999999999 9999999999999999999887533 455677899999999999999999999999
Q ss_pred EEEECCCCeeeeeccc-------ccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc------ceEEEE--
Q 002407 674 HLYNTSENKLQQKSPI-------NLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID------LVHKFK-- 738 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i-------~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~------~~~~~~-- 738 (927)
+||+............ .........|...|++++|+|++. .|++++.|+.|++|+... ....+.
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 297 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDPNSDPQQPTFSLTAH 297 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCCCCCcceeeEEEEee
Confidence 9999643211100000 000000123788999999999887 799999999999998432 111111
Q ss_pred -eecCCcceEEEEEecCC-CEEEEEECCCcEEEEECCCCCCcc
Q 002407 739 -GFRNTNSQISASLTANG-RYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 739 -~~~~~~~v~sv~fspdg-~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
...|...|.+++|+|++ .+||+++.||.|+||++.+.+++.
T Consensus 298 ~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp ETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred ecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 12467789999999998 599999999999999999876554
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=316.73 Aligned_cols=295 Identities=20% Similarity=0.324 Sum_probs=239.6
Q ss_pred eeeeeEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccC
Q 002407 446 LYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 446 l~~~q~L~gH~~~I~~vafSpdG-~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
+....+|.+|.+.|++|+|+|++ ++|+||+.|++|++|++...............+|...+..+.++|++.++++++.+
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 34457889999999999999965 89999999999999998754332222222345788899999999999999999999
Q ss_pred CceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEE
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK 602 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~ 602 (927)
+.+ .+|++ .++.+..+.+|...|.+++|+|+ .+|++++.|++|++||+.......
T Consensus 87 ~~v-----------------------~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~ 143 (319)
T 3frx_A 87 KTL-----------------------RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT 143 (319)
T ss_dssp SEE-----------------------EEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEE
T ss_pred CEE-----------------------EEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 888 45554 35667889999999999999998 789999999999999997554444
Q ss_pred EEecCCceEEEEEccC-----CCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEE
Q 002407 603 IFSHSDYVTCIQFNPV-----DDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676 (927)
Q Consensus 603 ~~~h~~~V~~v~fsp~-----dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~Iw 676 (927)
...|...|.+++|.|. ++.+|++++.|+.|++||+.+.++.. +..|...|.+++|+|++++|++++.||.|+||
T Consensus 144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iw 223 (319)
T 3frx_A 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223 (319)
T ss_dssp ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 4459999999999983 23489999999999999999987765 55677899999999999999999999999999
Q ss_pred ECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce--EEEEee------cCCcceEE
Q 002407 677 NTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV--HKFKGF------RNTNSQIS 748 (927)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~--~~~~~~------~~~~~v~s 748 (927)
|+.+++....+ .+...|.+++|+|++. +|++++ +..|++|+..... ..+... .+...+.+
T Consensus 224 d~~~~~~~~~~----------~~~~~v~~~~~sp~~~-~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 291 (319)
T 3frx_A 224 NLAAKKAMYTL----------SAQDEVFSLAFSPNRY-WLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS 291 (319)
T ss_dssp ETTTTEEEEEE----------ECCSCEEEEEECSSSS-EEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEE
T ss_pred ECCCCcEEEEe----------cCCCcEEEEEEcCCCC-EEEEEc-CCCcEEEEeCcCeeeeccCccccccccCcCcceeE
Confidence 99998877664 2346799999999986 555555 5569999965432 222211 23456889
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 749 ASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 749 v~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
++|+|||++|++|+.|+.|+||++.+.
T Consensus 292 ~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 292 LAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEECCCCCEEEEeecCceEEEEEEeec
Confidence 999999999999999999999998753
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=355.83 Aligned_cols=408 Identities=14% Similarity=0.140 Sum_probs=304.8
Q ss_pred eeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
...+.|.+|.+.|++|+|+|+|++||+++.||.|+|||+.+++....+ ..+...+.++.|+|++..+++++.++.
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~ 78 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-----QVTETPVRAGKFIARKNWIIVGSDDFR 78 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-----ECCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-----ecCCCcEEEEEEeCCCCEEEEEeCCCe
Confidence 345678999999999999999999999999999999999998776665 367788999999999999999988887
Q ss_pred eeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC-cEEEE
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK-TCLKI 603 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~-~~~~~ 603 (927)
+ .+|++ +++.+..+.+|.+.|++++|+|+ .+|++++.|++|++||+.++ .....
T Consensus 79 i-----------------------~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 135 (814)
T 3mkq_A 79 I-----------------------RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (814)
T ss_dssp E-----------------------EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred E-----------------------EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence 7 44544 45677888999999999999999 68999999999999999987 55666
Q ss_pred Ee-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccC-CCcEEEEEECC--CCCEEEEEECCCeEEEEEC
Q 002407 604 FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDL-HEMVTAACYTP--DGQGALVGSYKGSCHLYNT 678 (927)
Q Consensus 604 ~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~-~~~V~sla~sp--dg~~l~tgs~Dg~I~IwDl 678 (927)
+. |...|.+++|+|.++++|++++.||.|++||+.++.... ...+ ...+.+++|+| ++.+|++++.||.|++||+
T Consensus 136 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215 (814)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEET
T ss_pred EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 65 999999999999667899999999999999998766543 2333 37899999999 9999999999999999999
Q ss_pred CCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCC--
Q 002407 679 SENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGR-- 756 (927)
Q Consensus 679 ~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~-- 756 (927)
.+++....+ ..|...|++++|+|++. +|++++.|+.|++||............+...+.+++|+|++.
T Consensus 216 ~~~~~~~~~---------~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 285 (814)
T 3mkq_A 216 QTKSCVATL---------EGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN 285 (814)
T ss_dssp TTTEEEEEE---------ECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGG
T ss_pred CCCcEEEEE---------cCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCce
Confidence 998876654 36888999999999987 899999999999999765544444455567899999999987
Q ss_pred EEEEEECCCcEEEEECCCCCCcccccccc--ee--------------------------------eeeeeecCCCeEEEE
Q 002407 757 YVVSASEDSYVYVWKYEAESRPSRSKSIT--VT--------------------------------HSYEHFHCQDVSVAI 802 (927)
Q Consensus 757 ~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~--~~--------------------------------~~~~~~~~~~v~vav 802 (927)
+++++ .++.+.+|++............. .. ............+++
T Consensus 286 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (814)
T 3mkq_A 286 YIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAH 364 (814)
T ss_dssp EEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEE
T ss_pred EEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEE
Confidence 45555 46779999987643321110000 00 000000001123334
Q ss_pred ecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhcccccc
Q 002407 803 PWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTARN 882 (927)
Q Consensus 803 s~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~~~~ 882 (927)
+.+|...+... ++.+..|......... ......++|||++.+|+++. .++.+.+|.. ..+|
T Consensus 365 spdg~~la~~~-~~~~~i~~~~~~~~~~---------~~~i~~~~~spdg~~la~~~----~~g~v~l~~~-----~~~~ 425 (814)
T 3mkq_A 365 SPNGRFVTVVG-DGEYVIYTALAWRNKA---------FGKCQDFVWGPDSNSYALID----ETGQIKYYKN-----FKEV 425 (814)
T ss_dssp CTTSSEEEEEE-TTEEEEEETTTTEEEE---------EEECSEEEECTTSSCEEEEC----TTCCEEEEET-----TEEC
T ss_pred CCCCCEEEEec-CCEEEEEECccccccC---------CCceEEEEEeCCCCeEEEEe----CCCcEEEEEC-----CCCc
Confidence 44444333332 3344444321100000 02234578999999999976 6778888853 2233
Q ss_pred CCCceecccCCCCCcccCCCC---CEEEEEcCCCcEEEeec
Q 002407 883 RSPRTSLDISNGISSSISAWG---MVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 883 ~s~v~s~~~~~~~~~a~S~dG---~vLvTgs~DG~IrvW~~ 920 (927)
...+. +++|+|+| .+|++++.||+|++|+.
T Consensus 426 ~~~v~--------~~~~s~dg~~~~~l~~~~~d~~v~~~d~ 458 (814)
T 3mkq_A 426 TSWSV--------PMHSAIDRLFSGALLGVKSDGFVYFFDW 458 (814)
T ss_dssp TTCCC--------CCSSCCCEEECSSSEEEEETTEEEEECT
T ss_pred cceEE--------cCCcCccceecceEEEEecCCEEEEEEC
Confidence 33322 46899999 68999999999999983
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=358.66 Aligned_cols=417 Identities=10% Similarity=0.044 Sum_probs=291.6
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeec
Q 002407 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~ 531 (927)
..+|.+.|++|+|+|++++||+|+.||+|+||+....+....+ .+...|..++|+| +.+|++++.++.+
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~------~~~~~V~~l~fsp-g~~L~S~s~D~~v---- 81 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL------EDRSAIKEMRFVK-GIYLVVINAKDTV---- 81 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC------SSCCCEEEEEEET-TTEEEEEETTCEE----
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc------CCCCCEEEEEEcC-CCEEEEEECcCeE----
Confidence 3589999999999999999999999999999998776543332 2456899999999 7788888888877
Q ss_pred ccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEE------
Q 002407 532 RGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKI------ 603 (927)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~------ 603 (927)
.+|++. ++.+..+. |...|++++|+|+ .+|++|+.||+|++||+.++++...
T Consensus 82 -------------------~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~ 141 (902)
T 2oaj_A 82 -------------------YVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ 141 (902)
T ss_dssp -------------------EEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHH
T ss_pred -------------------EEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccc
Confidence 455553 35556664 7789999999999 8899999999999999998876411
Q ss_pred -----E-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC-------------------CcEEEEEEC
Q 002407 604 -----F-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH-------------------EMVTAACYT 658 (927)
Q Consensus 604 -----~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~-------------------~~V~sla~s 658 (927)
+ .|...|++++|+|.+..+|++|+.|+.| +||+++++.+..+..+ ..|++++|+
T Consensus 142 ~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 142 KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred ccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 1 2788999999999446789999999999 9999999887655433 679999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeeeecccc---cccc-c-----ccCCCCCeEEEEEcC----CCCcEEEEEECC---
Q 002407 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPIN---LQNK-K-----KRSHQRKITGFQFAP----GSSSEVLVTSAD--- 722 (927)
Q Consensus 659 pdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~---~~~~-~-----~~~h~~~Vtsl~fsp----dg~~~Llsgs~D--- 722 (927)
|+|++|++++.||.|++||+.+++.+....+. .... . ...+...|++++|++ ++..+|++++.+
T Consensus 221 pdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~ 300 (902)
T 2oaj_A 221 PNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRG 300 (902)
T ss_dssp TTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTS
T ss_pred CCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCC
Confidence 99999999999999999999998776532110 0000 0 002455799999964 434567777666
Q ss_pred --CcEEEEECC--------------------cceEEEEeecCCcceEEEEEec----------CCCEEEEEECCCcEEEE
Q 002407 723 --SRIRVVDGI--------------------DLVHKFKGFRNTNSQISASLTA----------NGRYVVSASEDSYVYVW 770 (927)
Q Consensus 723 --g~I~VwD~~--------------------~~~~~~~~~~~~~~v~sv~fsp----------dg~~Lasgs~Dg~I~IW 770 (927)
..|.+|+.. .....+. ..+...+..+++.+ +...|++++.|+.|++|
T Consensus 301 ~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~ 379 (902)
T 2oaj_A 301 DNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFP-LPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETM 379 (902)
T ss_dssp SCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEEC-CSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEE
T ss_pred CCceEEEEecCCCCCccccchhhhhhhhcCccceEEEe-cCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEE
Confidence 378898832 1122222 12456788888765 34588999999999999
Q ss_pred ECCCCCCccc-------ccccceeee----------------------------------eeeecCCC-eEEEEecCCce
Q 002407 771 KYEAESRPSR-------SKSITVTHS----------------------------------YEHFHCQD-VSVAIPWPGVG 808 (927)
Q Consensus 771 dl~s~~~~~~-------~~~~~~~~~----------------------------------~~~~~~~~-v~vavs~~g~~ 808 (927)
++.++..... ...+..... ...|++++ ..+..++++++
T Consensus 380 ~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtV 459 (902)
T 2oaj_A 380 LYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSV 459 (902)
T ss_dssp ETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEE
T ss_pred ECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcE
Confidence 9976532111 000000000 01122222 34445566666
Q ss_pred eEEeecCCceeeccccCCCCCccee--cc---CCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhc------
Q 002407 809 DTWGLQDTYLDEFSTANHPPTPVEE--IS---GNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLV------ 877 (927)
Q Consensus 809 ~i~~~~d~~i~~~~~~~~~~~~~~~--l~---~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~------ 877 (927)
.+|+...+.+... .... +. +......+..++||||+++||+++ .|+.+++|+.....
T Consensus 460 rlWd~~~g~~~~~--------~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs----~DgtV~lwd~~~~~~~~~~~ 527 (902)
T 2oaj_A 460 RIYDASHGDIQDN--------ASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI----ETGDVVLFKYEVNQFYSVEN 527 (902)
T ss_dssp EEEESSCCTTTTT--------BCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE----TTSCEEEEEEEECCC-----
T ss_pred EEEECCCccccCC--------ceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe----cCcEEEEEEecCccccCccc
Confidence 7776655432100 0000 00 001123455678999999999988 88999999876331
Q ss_pred ------------------------------------------cccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcE
Q 002407 878 ------------------------------------------LTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEI 915 (927)
Q Consensus 878 ------------------------------------------~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~I 915 (927)
...+|..++. +++||||| +||+|+.||+|
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~--------svafSpdG-~lAsgs~D~tv 598 (902)
T 2oaj_A 528 RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTS--------AINNSNIG-FVGIAYAAGSL 598 (902)
T ss_dssp ----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEE--------EEEECBTS-EEEEEETTSEE
T ss_pred cCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEE--------EEEecCCc-EEEEEeCCCcE
Confidence 0112333333 57899999 99999999999
Q ss_pred EEeecCC
Q 002407 916 RAYQNFG 922 (927)
Q Consensus 916 rvW~~~g 922 (927)
|+|+.-+
T Consensus 599 ~lwd~~~ 605 (902)
T 2oaj_A 599 MLIDRRG 605 (902)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 9999655
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=326.29 Aligned_cols=315 Identities=19% Similarity=0.216 Sum_probs=232.5
Q ss_pred EEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEecCcCcccceeecc
Q 002407 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE------DCVIHVWQVVESERKGELLEK 497 (927)
Q Consensus 424 ~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~------DgtVrVWdv~~~~~~~~l~~~ 497 (927)
.+.+....+...|+.... ...+|++.|++|+|||||++||+|+. |+.|++|+..++.....+..
T Consensus 19 ~~~~~g~~~~~~w~~p~~---------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~- 88 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPVT---------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT- 88 (357)
T ss_dssp ------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS-
T ss_pred EEecCCCccccccCCCCC---------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec-
Confidence 344555667778875322 23579999999999999999999998 77899999887765444321
Q ss_pred cccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC
Q 002407 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (927)
Q Consensus 498 ~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp 577 (927)
....+...|..++|+|++.+++++ .++.+..+....... .........+|...|++|+|+|
T Consensus 89 ~~~~~~~~V~~~~~s~d~~~l~~s-~dg~v~lWd~~~~~~------------------~~~~~~~~~~h~~~V~~v~~sp 149 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSEKGILVAS-DSGAVELWEILEKES------------------LLVNKFAKYEHDDIVKTLSVFS 149 (357)
T ss_dssp EEEECSSCEEEEEEETTTEEEEEE-TTSCEEEC--------------------------CCCCEEECCCSSCEEEEEECS
T ss_pred ccCCCCCCEEEEEEcCCCCEEEEE-CCCEEEEeeccccce------------------eEEEeeccCCCCCCEEEEEECC
Confidence 123456679999999998877654 566663332111000 0011234568999999999999
Q ss_pred C-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec---cCCCcE
Q 002407 578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN---DLHEMV 652 (927)
Q Consensus 578 d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~---~~~~~V 652 (927)
+ .+|++++.|++|++||+.+++++..+. |...|++++|+|....+|++++.|+.|++||+++++.+... .+...+
T Consensus 150 dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v 229 (357)
T 4g56_B 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIP 229 (357)
T ss_dssp SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccc
Confidence 9 789999999999999999999999887 99999999999944468999999999999999998766433 345689
Q ss_pred EEEEECCC-CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 002407 653 TAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 653 ~sla~spd-g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~ 731 (927)
++++|+|+ +.+|++|+.|+.|++||+++++....+ ..|...|++++|+|++..+|++++.|++|+|||..
T Consensus 230 ~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~---------~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~ 300 (357)
T 4g56_B 230 TSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS---------AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDAD 300 (357)
T ss_dssp EEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE---------CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred cchhhhhcccceEEEeecccceeEEECCCCcEeEEE---------eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECC
Confidence 99999997 568899999999999999988766554 47889999999999987789999999999999976
Q ss_pred cceEEEEeecCCcceEEEEEec-CCCEEEEEECCCcEEEEECCCCCC
Q 002407 732 DLVHKFKGFRNTNSQISASLTA-NGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 732 ~~~~~~~~~~~~~~v~sv~fsp-dg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
... .+....|...|.+++|+| ++++|++++.||.|++|++....+
T Consensus 301 ~~~-~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 301 FSE-VFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp SCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred CCc-EeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 543 233446788899999998 899999999999999999976543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=316.87 Aligned_cols=250 Identities=20% Similarity=0.263 Sum_probs=208.2
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
..|...|.+|+|+|++ +|++|+.||+|+|||+.+++....+
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~-------------------------------------- 119 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVS-------------------------------------- 119 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEE--------------------------------------
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEe--------------------------------------
Confidence 4578899999999985 7889999999999999876543221
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCce
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYV 610 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V 610 (927)
...+.+|.+.|++|+|+|+ .+|++++.|++|+|||+.+++++..+. |...|
T Consensus 120 ---------------------------~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V 172 (344)
T 4gqb_B 120 ---------------------------KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV 172 (344)
T ss_dssp ---------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred ---------------------------eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence 1234589999999999999 789999999999999999999999887 99999
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc---CCCcEEEEEECCC-CCEEEEEECCCeEEEEECCCCeeeee
Q 002407 611 TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND---LHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 611 ~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~---~~~~V~sla~spd-g~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
++++|+|.+..+|++++.|++|++||+++++.+..+. +...+++++|+|+ +++|++|+.||.|+|||+++++.+..
T Consensus 173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~ 252 (344)
T 4gqb_B 173 TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS 252 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE
T ss_pred EEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE
Confidence 9999999444689999999999999999988776543 3357999999994 57889999999999999999887765
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCC-EEEEEECCC
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGR-YVVSASEDS 765 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~-~Lasgs~Dg 765 (927)
+ ..|...|++++|+|++..+|++++.|++|+|||..... .+....|...|.+++|+|+++ +|++++.|+
T Consensus 253 ~---------~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 253 S---------AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp E---------ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred E---------cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence 4 48899999999999987789999999999999975443 334456778899999999986 677999999
Q ss_pred cEEEEECCCCCCc
Q 002407 766 YVYVWKYEAESRP 778 (927)
Q Consensus 766 ~I~IWdl~s~~~~ 778 (927)
+|++|++.+...+
T Consensus 323 ~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 323 QVVHHVVPTEPLP 335 (344)
T ss_dssp CEEEEECCC----
T ss_pred eEEEEECCCCCCC
Confidence 9999999876543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=305.18 Aligned_cols=288 Identities=23% Similarity=0.365 Sum_probs=243.2
Q ss_pred eeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 448 ~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
...++.+|.+.|++++|+|+|++||+|+.||.|+||++.+++....+ .++...+..+.|+|++.++++++.++.+
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-----SGHKLGISDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-----ccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence 34677899999999999999999999999999999999888765554 4677889999999999999999888877
Q ss_pred eeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~ 605 (927)
.+|++ ..+.+..+.+|...|.+++|+|+ .+|++++.|++|++||+.+++++..+.
T Consensus 90 -----------------------~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 146 (312)
T 4ery_A 90 -----------------------KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP 146 (312)
T ss_dssp -----------------------EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred -----------------------EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec
Confidence 34444 34667888999999999999998 789999999999999999999988887
Q ss_pred -cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec--cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCe
Q 002407 606 -HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 606 -h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~--~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~ 682 (927)
|...|.+++|+| ++++|++++.|+.|++||+.+++.+... .+...+..++|+|++++|++++.|+.|++||+.+++
T Consensus 147 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 225 (312)
T 4ery_A 147 AHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 225 (312)
T ss_dssp CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTE
T ss_pred CCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 899999999999 9999999999999999999998876543 344689999999999999999999999999999988
Q ss_pred eeeecccccccccccCCCCCe--EEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEE
Q 002407 683 LQQKSPINLQNKKKRSHQRKI--TGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVS 760 (927)
Q Consensus 683 ~~~~~~i~~~~~~~~~h~~~V--tsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Las 760 (927)
....+. .|...+ ....+.+.+..+|++++.|+.|++||............+...|.+++|+|++++|++
T Consensus 226 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 296 (312)
T 4ery_A 226 CLKTYT---------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 296 (312)
T ss_dssp EEEEEC---------SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred EEEEEE---------ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEE
Confidence 776543 333322 223444444458999999999999997655444444456778999999999999999
Q ss_pred EE--CCCcEEEEECC
Q 002407 761 AS--EDSYVYVWKYE 773 (927)
Q Consensus 761 gs--~Dg~I~IWdl~ 773 (927)
++ .|+.|++|+.+
T Consensus 297 ~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 297 AALENDKTIKLWKSD 311 (312)
T ss_dssp EECTTTCCEEEEECC
T ss_pred EEccCCccEEEecCC
Confidence 97 69999999974
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=319.08 Aligned_cols=296 Identities=25% Similarity=0.351 Sum_probs=239.5
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc-------------CccccEEEEccCCCCCeecc
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED-------------GHLNMLLLANGSPEPTSLSP 520 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~-------------~~~~~v~~v~~spd~~~la~ 520 (927)
+|.+.|++++|+|||++||+|+ +++++||++.+++....+...... .....+.+++|+|++.++++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999987 789999999988776655321100 12234889999999999999
Q ss_pred cccCCceeeecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC
Q 002407 521 KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK 598 (927)
Q Consensus 521 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~ 598 (927)
+..++.+ .+|++. .+.+..+.+|...|++++|+|+ .+|++++.|++|++||+.++
T Consensus 141 ~~~d~~i-----------------------~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~ 197 (393)
T 1erj_A 141 GAEDRLI-----------------------RIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG 197 (393)
T ss_dssp EETTSCE-----------------------EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred EcCCCeE-----------------------EEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC
Confidence 9888887 445443 4567788999999999999998 78999999999999999999
Q ss_pred cEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec--------cCCCcEEEEEECCCCCEEEEEECC
Q 002407 599 TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--------DLHEMVTAACYTPDGQGALVGSYK 670 (927)
Q Consensus 599 ~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~--------~~~~~V~sla~spdg~~l~tgs~D 670 (927)
++...+.+...+.+++|+|.++++|++|+.|+.|++||+.+++++..+ .|...|.+++|+|++++|++|+.|
T Consensus 198 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d 277 (393)
T 1erj_A 198 QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277 (393)
T ss_dssp EEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 999999999999999999978899999999999999999998876543 466789999999999999999999
Q ss_pred CeEEEEECCCCeeeeecccc---cccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceE
Q 002407 671 GSCHLYNTSENKLQQKSPIN---LQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQI 747 (927)
Q Consensus 671 g~I~IwDl~~~~~~~~~~i~---~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~ 747 (927)
+.|++||+.+.......... .......+|...|.+++|+|++. +|++++.|+.|++||............|...|.
T Consensus 278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~ 356 (393)
T 1erj_A 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 356 (393)
T ss_dssp SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCCeEEEEECCCCCCEE
Confidence 99999999865432111000 00111247889999999999887 899999999999999765444444445677899
Q ss_pred EEEEec------CCCEEEEEECCCcEEEEECCC
Q 002407 748 SASLTA------NGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 748 sv~fsp------dg~~Lasgs~Dg~I~IWdl~s 774 (927)
+++|++ ++++|++|+.||.|+||++..
T Consensus 357 ~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 357 SVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999886 688999999999999999865
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=307.48 Aligned_cols=296 Identities=21% Similarity=0.325 Sum_probs=240.8
Q ss_pred eeeeEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCC
Q 002407 447 YKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vafSpd-G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~ 525 (927)
....+|+||++.|++|+|+|+ +++|||||.|++|+|||+.+.+...........+|...|..+.|+|++.+++++..++
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 344678999999999999997 6899999999999999998876554443344567889999999999999999998888
Q ss_pred ceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEE
Q 002407 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF 604 (927)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~ 604 (927)
.+..+... ..........+...+..+.++++ ..|++++.|+.+++||+.........
T Consensus 109 ~i~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~ 166 (340)
T 4aow_A 109 TLRLWDLT----------------------TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ 166 (340)
T ss_dssp EEEEEETT----------------------TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred cceEEeec----------------------ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE
Confidence 77433221 22344556678888999999988 78999999999999999876654443
Q ss_pred e--cCCceEEEEEccCC-CCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Q 002407 605 S--HSDYVTCIQFNPVD-DRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 605 ~--h~~~V~~v~fsp~d-g~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~ 680 (927)
. |...|.+++|++.. ..++++++.|+.|++||+.+++++.. ..+...|++++|+|++++|++|+.|+.|++||+.+
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~ 246 (340)
T 4aow_A 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246 (340)
T ss_dssp SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence 2 88999999998832 35788999999999999999987764 45678999999999999999999999999999999
Q ss_pred CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEE--EE-------eecCCcceEEEEE
Q 002407 681 NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHK--FK-------GFRNTNSQISASL 751 (927)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~--~~-------~~~~~~~v~sv~f 751 (927)
.+.+..+ .+...|.+++|+|++ .+++++.|+.|+|||....... +. ...+...|.+++|
T Consensus 247 ~~~~~~~----------~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 314 (340)
T 4aow_A 247 GKHLYTL----------DGGDIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW 314 (340)
T ss_dssp TEEEEEE----------ECSSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEE
T ss_pred Cceeeee----------cCCceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEE
Confidence 8877654 345679999999976 4778888999999996543322 21 2245678999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCC
Q 002407 752 TANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 752 spdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
+|+|++|++|+.||.|+|||++++.
T Consensus 315 s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 315 SADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 9999999999999999999999875
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=312.36 Aligned_cols=305 Identities=18% Similarity=0.274 Sum_probs=226.1
Q ss_pred eeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcc--cceeecccccCccccEEEEccCCCCCeecccccC
Q 002407 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER--KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~--~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
...++|++|.+.|++++|+|+ +||+|+.|++|+||++..+.. ...+ ....|...|.+++|+|++.++++++.+
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~---~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVL---DETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEE---CTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEE---ecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 345778999999999999998 999999999999999987532 1111 122377889999999999999999999
Q ss_pred CceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCC----Cc
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS----KT 599 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t----~~ 599 (927)
+.+..+....... .....+.+..+.+|...|++++|+|+ .+|++++.|++|++||+.. .+
T Consensus 80 ~~v~iw~~~~~~~---------------~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~ 144 (330)
T 2hes_X 80 STVSIWAKEESAD---------------RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYE 144 (330)
T ss_dssp SCEEEEEC----------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCE
T ss_pred CcEEEEEcccCcC---------------ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeE
Confidence 8885543211000 00123456788999999999999998 7899999999999999943 24
Q ss_pred EEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC--cEEE-eccCCCcEEEEEECCC--CCEEEEEECCCeE
Q 002407 600 CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--QVVD-WNDLHEMVTAACYTPD--GQGALVGSYKGSC 673 (927)
Q Consensus 600 ~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--~~v~-~~~~~~~V~sla~spd--g~~l~tgs~Dg~I 673 (927)
++..+. |...|.+++|+| ++.+|++++.|++|++||+.++ +++. +..|...|.+++|+|+ +.+|++|+.|++|
T Consensus 145 ~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v 223 (330)
T 2hes_X 145 CISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV 223 (330)
T ss_dssp EEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCE
T ss_pred EEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeE
Confidence 566665 999999999999 9999999999999999998776 3443 4567789999999998 7789999999999
Q ss_pred EEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce--EEEE-eecCCc-ceEEE
Q 002407 674 HLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV--HKFK-GFRNTN-SQISA 749 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~--~~~~-~~~~~~-~v~sv 749 (927)
++||+..+.................|...|++++|++++ +|++++.|+.|+|||..... .... ...+.. .+.++
T Consensus 224 ~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v 301 (330)
T 2hes_X 224 RVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVV 301 (330)
T ss_dssp EEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEE
T ss_pred EEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEE
Confidence 999986542100000000000012388899999999765 79999999999999964331 1111 123444 79999
Q ss_pred EEec--CCCEEEEEECCCcEEEEECCC
Q 002407 750 SLTA--NGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 750 ~fsp--dg~~Lasgs~Dg~I~IWdl~s 774 (927)
+|+| ++++|++++.||.|+||+++.
T Consensus 302 ~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 302 KWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEecCCCceEEEEecCCCcEEEEEecc
Confidence 9999 789999999999999999865
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=319.61 Aligned_cols=288 Identities=15% Similarity=0.191 Sum_probs=239.9
Q ss_pred ecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEec----CcCcc------cceeecccc-----cCccccEEEEccCCCCC
Q 002407 453 QAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQV----VESER------KGELLEKQE-----DGHLNMLLLANGSPEPT 516 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~-~LaSgs~DgtVrVWdv----~~~~~------~~~l~~~~~-----~~~~~~v~~v~~spd~~ 516 (927)
..|.+.|++++|+|+|+ +||+|+.||.|+||++ .+++. ...+..... .++...+.+++|+|++.
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45779999999999999 9999999999999999 77763 333322111 12567899999999999
Q ss_pred eecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeC
Q 002407 517 SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL 595 (927)
Q Consensus 517 ~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl 595 (927)
+++++..++.+ .+|+..++.+..+.+|...|.+++|+|+ .+|++++.|+.|++||+
T Consensus 122 ~l~~~~~dg~i-----------------------~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 178 (425)
T 1r5m_A 122 SIVTGVENGEL-----------------------RLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNV 178 (425)
T ss_dssp EEEEEETTSCE-----------------------EEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred EEEEEeCCCeE-----------------------EEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEEC
Confidence 99999888777 4566677888899999999999999998 78999999999999999
Q ss_pred CCCcEEEEEe-cCCc---------------eEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEEC
Q 002407 596 SSKTCLKIFS-HSDY---------------VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYT 658 (927)
Q Consensus 596 ~t~~~~~~~~-h~~~---------------V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~s 658 (927)
.+++.+..+. +... +.+++|+| + ..+++++.++.|++||+.+++.+. ...+...|.+++|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 256 (425)
T 1r5m_A 179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256 (425)
T ss_dssp TTTEEEEEECCC---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE
T ss_pred CCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC
Confidence 9999988887 4444 99999998 5 568899999999999999987665 44667899999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEE
Q 002407 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFK 738 (927)
Q Consensus 659 pdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~ 738 (927)
|++++|++++.|+.|++||+.+++....+ ..|...|.+++|+|++ ++++++.|+.|++||.........
T Consensus 257 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---------~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~ 325 (425)
T 1r5m_A 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCF---------YGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLAL 325 (425)
T ss_dssp TTTTEEEEEETTSCEEEECSSSBSCSEEE---------CCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEcCCCEEEEEECCCCccceEe---------cCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEe
Confidence 99999999999999999999987765554 3688899999999987 899999999999999876655555
Q ss_pred eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 739 GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 739 ~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
...+...+.+++|+|++++|++++.||.|+||++.+..
T Consensus 326 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 326 SIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred cccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 55567789999999999999999999999999997643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-33 Score=342.68 Aligned_cols=419 Identities=14% Similarity=0.146 Sum_probs=312.5
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
..+++++..++.|++|+..+++ ..+.+.+|.+.|++++|+|++++||+|+.||.|+||++.+++....+ .
T Consensus 25 ~~~la~~~~~g~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-----~ 94 (814)
T 3mkq_A 25 EPWVLTTLYSGRVEIWNYETQV-----EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-----E 94 (814)
T ss_dssp SSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-----E
T ss_pred CCEEEEEeCCCEEEEEECCCCc-----eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-----e
Confidence 3566777888999999977654 34567899999999999999999999999999999999998877665 4
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCC--CceEEEccCCCCEEEEEecC-
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD--KPICSFQGHLDDVLDLSWSK- 577 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~--k~i~~l~gH~~~V~~l~~sp- 577 (927)
++...+..+.|+|++..++++..++.+. +|++.. .....+.+|...|.+++|+|
T Consensus 95 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~-----------------------vw~~~~~~~~~~~~~~~~~~v~~~~~~p~ 151 (814)
T 3mkq_A 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVK-----------------------LWNWENNWALEQTFEGHEHFVMCVAFNPK 151 (814)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEE-----------------------EEEGGGTSEEEEEEECCSSCEEEEEEETT
T ss_pred cCCCCEEEEEEeCCCCEEEEEcCCCEEE-----------------------EEECCCCceEEEEEcCCCCcEEEEEEEcC
Confidence 5778899999999999999998888774 333322 45667889999999999999
Q ss_pred C-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccC-CCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcE
Q 002407 578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPV-DDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMV 652 (927)
Q Consensus 578 d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~-dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V 652 (927)
+ ..|++++.|++|++||+.++.....+. +...|.+++|+|. ++.+|++++.|+.|++||+.+++.+..+ .+...|
T Consensus 152 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v 231 (814)
T 3mkq_A 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231 (814)
T ss_dssp EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence 5 689999999999999999887776665 4589999999973 6779999999999999999998877654 466899
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc
Q 002407 653 TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID 732 (927)
Q Consensus 653 ~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~ 732 (927)
.+++|+|++.+|++++.||.|++||+.+++....+ ..+...+.+++|+|++...+++++.++.+.+|+...
T Consensus 232 ~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 232 SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL---------NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE---------CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe---------ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 99999999999999999999999999998877664 367789999999999876667777788888888432
Q ss_pred ce----------EEEE---------------------------------eecCCcceEEEEEecCCCEEEEEECCCcEEE
Q 002407 733 LV----------HKFK---------------------------------GFRNTNSQISASLTANGRYVVSASEDSYVYV 769 (927)
Q Consensus 733 ~~----------~~~~---------------------------------~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~I 769 (927)
.. .... ...+...+.+++|+|+|++|++++ |+.++|
T Consensus 303 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i 381 (814)
T 3mkq_A 303 DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVI 381 (814)
T ss_dssp CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEE
T ss_pred CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEE
Confidence 11 0000 011233467899999999999998 899999
Q ss_pred EECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeec
Q 002407 770 WKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNS 849 (927)
Q Consensus 770 Wdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fS 849 (927)
|++...... .........|+++ +...+....++.+..|.....+... ...+.|+
T Consensus 382 ~~~~~~~~~-----~~~~i~~~~~spd---------g~~la~~~~~g~v~l~~~~~~~~~~------------v~~~~~s 435 (814)
T 3mkq_A 382 YTALAWRNK-----AFGKCQDFVWGPD---------SNSYALIDETGQIKYYKNFKEVTSW------------SVPMHSA 435 (814)
T ss_dssp EETTTTEEE-----EEEECSEEEECTT---------SSCEEEECTTCCEEEEETTEECTTC------------CCCCSSC
T ss_pred EECcccccc-----CCCceEEEEEeCC---------CCeEEEEeCCCcEEEEECCCCccce------------EEcCCcC
Confidence 997542211 1111222334433 3333333334444444322222111 2234589
Q ss_pred CCC---CeEEEeccccccCccccccCchhhccccccCCCceecccCCCCCcccCCCCCEEEEE------cCCCcEEEeec
Q 002407 850 PLN---GTISSATNSYFFDRISATWPEEKLVLTARNRSPRTSLDISNGISSSISAWGMVIVTA------GLRGEIRAYQN 920 (927)
Q Consensus 850 Pdg---~~Lasas~~~~~d~~v~~W~~e~l~~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTg------s~DG~IrvW~~ 920 (927)
|++ ++|++++ .++.+.+|+.+..........+.. .++|+|||++|+++ +.++.+.+|.+
T Consensus 436 ~dg~~~~~l~~~~----~d~~v~~~d~~~~~~~~~~~~~~~--------~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~ 503 (814)
T 3mkq_A 436 IDRLFSGALLGVK----SDGFVYFFDWDNGTLVRRIDVNAK--------DVIWSDNGELVMIVNTNSNGDEASGYTLLFN 503 (814)
T ss_dssp CCEEECSSSEEEE----ETTEEEEECTTTCCEEEEESSCEE--------EEEECTTSSEEEEEECCCSSCSCSEEEEEEC
T ss_pred ccceecceEEEEe----cCCEEEEEECCcCcEEEEEecCCC--------EEEEcCCCCEEEEEEcCcccCCceEEEEEec
Confidence 998 6788766 688999999764322111111111 37899999999999 77777777764
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=309.68 Aligned_cols=286 Identities=15% Similarity=0.265 Sum_probs=235.4
Q ss_pred CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 557 ~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
.+...++.+|.+.|++++|+|+ .+|++++.|++|+|||+.+++.+..+. |...|.+++|+| ++++|++++.|+.|++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSI 123 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECT-TSSEEEEEETTCEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECC-CCCEEEEEeCCCeEEE
Confidence 4567789999999999999998 789999999999999999999988887 899999999999 9999999999999999
Q ss_pred EeCCCCc----EE-EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc
Q 002407 635 WSIPERQ----VV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 635 WDl~t~~----~v-~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
|++.+.. .. ....|...|.++.|++++. +++++.|+.|++||+.+++....+ ..|...|++++|+
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~---------~~h~~~v~~~~~~ 193 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF---------TGHTGDVMSLSLA 193 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEE---------CCCSSCEEEEEEC
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEE---------cCCCCceEEEEEC
Confidence 9998753 22 3556778999999998875 889999999999999999877664 4788999999999
Q ss_pred CCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeee
Q 002407 710 PGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHS 789 (927)
Q Consensus 710 pdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~ 789 (927)
|++. +|++++.|+.|++||............+...|.+++|+|++++|++++.|+.|+|||+++......
T Consensus 194 ~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~--------- 263 (340)
T 1got_B 194 PDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT--------- 263 (340)
T ss_dssp TTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---------
T ss_pred CCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE---------
Confidence 9886 899999999999999766544444445677899999999999999999999999999976421100
Q ss_pred eeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCcccc
Q 002407 790 YEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISA 869 (927)
Q Consensus 790 ~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~ 869 (927)
+... ... .....++|+|++.+|++++ .|+.+.
T Consensus 264 ---~~~~-----------------------------~~~------------~~v~~~~~s~~g~~l~~g~----~d~~i~ 295 (340)
T 1got_B 264 ---YSHD-----------------------------NII------------CGITSVSFSKSGRLLLAGY----DDFNCN 295 (340)
T ss_dssp ---ECCT-----------------------------TCC------------SCEEEEEECTTSSEEEEEE----TTSEEE
T ss_pred ---EccC-----------------------------Ccc------------cceEEEEECCCCCEEEEEC----CCCeEE
Confidence 0000 000 1123456999999999987 788999
Q ss_pred ccCchhhc---cccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 870 TWPEEKLV---LTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 870 ~W~~e~l~---~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
+|+..... ...+|..++. +++|+|+|++||||+.||+|++|+
T Consensus 296 vwd~~~~~~~~~~~~h~~~v~--------~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 296 VWDALKADRAGVLAGHDNRVS--------CLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEETTTCCEEEEEECCSSCEE--------EEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcccCcEeeEeecCCCcEE--------EEEEcCCCCEEEEEcCCccEEecC
Confidence 99875432 2345666655 468999999999999999999995
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=301.10 Aligned_cols=284 Identities=18% Similarity=0.304 Sum_probs=246.9
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeec
Q 002407 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~ 531 (927)
..+|.+.|++++|+|++++|++++ ||.|+||++.+++....+.......+...+..+.++|++.+++++..++.+.
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~--- 122 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS--- 122 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE---
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE---
Confidence 357999999999999999999999 9999999998876555443333346778899999999999999988887773
Q ss_pred ccccccccccccCcccccceEeecCC---CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 002407 532 RGRSINRKSLSLDHMVVPETVFALSD---KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (927)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~v~~~s~---k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h 606 (927)
+|++.. .....+.+|...|.+++|+|+ .+|++++.|+.|++||+.+++.+..+. |
T Consensus 123 --------------------~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~ 182 (337)
T 1gxr_A 123 --------------------IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182 (337)
T ss_dssp --------------------EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred --------------------EEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecc
Confidence 333332 245678889999999999998 789999999999999999999988887 8
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
...|.+++|+| ++++|++++.|+.|++||+.+++.+....+...+.+++|+|++++|++++.++.|++||+.+++....
T Consensus 183 ~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 261 (337)
T 1gxr_A 183 TDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred cCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE
Confidence 99999999999 99999999999999999999999988888889999999999999999999999999999998765432
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCc
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
..|...|++++|+|++. +|++++.|+.|++||......... ..+...+.+++|+|++++|++++.||.
T Consensus 262 ----------~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~ 329 (337)
T 1gxr_A 262 ----------HLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp ----------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred ----------cCCccceeEEEECCCCC-EEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCe
Confidence 47888999999999987 899999999999999765544433 335778999999999999999999999
Q ss_pred EEEEEC
Q 002407 767 VYVWKY 772 (927)
Q Consensus 767 I~IWdl 772 (927)
|++|++
T Consensus 330 i~iw~~ 335 (337)
T 1gxr_A 330 ATVYEV 335 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=325.79 Aligned_cols=289 Identities=13% Similarity=0.168 Sum_probs=236.8
Q ss_pred CCCCEEEEEEcCCCC-EEEEE----------eCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeeccccc
Q 002407 455 HNGSIWSIKFSLDGR-YLASA----------GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL 523 (927)
Q Consensus 455 H~~~I~~vafSpdG~-~LaSg----------s~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~ 523 (927)
|...|.+++|+|+|+ +||+| +.|+.|+||++.++.....+. ...+...+.+++|+|++.+++++..
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~ 87 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA---SLQVDSKFNDLDWSHNNKIIAGALD 87 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC---CCCCSSCEEEEEECSSSSCEEEEES
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE---EEecCCceEEEEECCCCCeEEEEcc
Confidence 345688999999997 99999 899999999998876432211 1245678999999999999999988
Q ss_pred CCceeeecccccccccccccCcccccceEeecCC-----CceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCC
Q 002407 524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-----KPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLS 596 (927)
Q Consensus 524 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~-----k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~ 596 (927)
++.+. +|++.. +.+..+.+|...|++++|+|+ .+|++++.|++|++||+.
T Consensus 88 dg~v~-----------------------vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 88 NGSLE-----------------------LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp SSCEE-----------------------EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred CCeEE-----------------------EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 88773 444433 477888999999999999996 679999999999999999
Q ss_pred CCc------EEEEE----ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC-------CCcEEEEEECC
Q 002407 597 SKT------CLKIF----SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-------HEMVTAACYTP 659 (927)
Q Consensus 597 t~~------~~~~~----~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~-------~~~V~sla~sp 659 (927)
+++ ....+ .|...|.+++|+|..+.+|++++.|+.|++||+.+++.+..+.. ...|.+++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 886 33332 38899999999993388999999999999999999988765554 57899999999
Q ss_pred CC-CEEEEEECCC---eEEEEECCCCe-eeeeccccccccccc-CCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc
Q 002407 660 DG-QGALVGSYKG---SCHLYNTSENK-LQQKSPINLQNKKKR-SHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL 733 (927)
Q Consensus 660 dg-~~l~tgs~Dg---~I~IwDl~~~~-~~~~~~i~~~~~~~~-~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~ 733 (927)
++ .+|++++.++ .|++||++++. .... .. .|...|++++|+|.+..+|++++.|+.|++||....
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~---------~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~ 295 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQT---------LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA 295 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBC---------CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEE---------eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence 97 6899999998 99999999863 3222 13 688999999999933348999999999999997665
Q ss_pred eEEEEeecCCcceEEEEEecCC-CEEEEEECCCcEEEEECCCCCCc
Q 002407 734 VHKFKGFRNTNSQISASLTANG-RYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 734 ~~~~~~~~~~~~v~sv~fspdg-~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
........+...+.+++|+|++ .+|++++.|+.|+||++.+....
T Consensus 296 ~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 296 EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 5444444567789999999999 89999999999999999886543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=320.32 Aligned_cols=283 Identities=15% Similarity=0.196 Sum_probs=236.7
Q ss_pred ceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEe
Q 002407 559 PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWS 636 (927)
Q Consensus 559 ~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWD 636 (927)
....+.+|.+.|++++|+|+ .+|++|+.|++|+|||+.+++.+..+. |...|++++|+| ++++|++|+.|++|++||
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWD 178 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEE
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEe
Confidence 34568899999999999998 889999999999999999999988887 999999999999 999999999999999999
Q ss_pred CCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 637 IPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 637 l~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
+.+++++..+ .|...|.+++|+|++.+|++|+.|+.|++||+.++.....+ ..|...|.++.|+|++. +
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~---------~~h~~~v~~~~~~~~g~-~ 248 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF---------TGHREWVRMVRPNQDGT-L 248 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE---------ECCSSCEEEEEECTTSS-E
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE---------eCCCccEEEEEECCCCC-E
Confidence 9998887644 56679999999999999999999999999999998877664 37889999999999887 8
Q ss_pred EEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecC--------------------CCEEEEEECCCcEEEEECCCC
Q 002407 716 VLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTAN--------------------GRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspd--------------------g~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|++++.|+.|++||............+...|.+++|+|+ +.+|++|+.|+.|+|||+.++
T Consensus 249 l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~ 328 (410)
T 1vyh_C 249 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328 (410)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred EEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999999997665554455556778999999996 679999999999999999764
Q ss_pred CCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeE
Q 002407 776 SRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTI 855 (927)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~L 855 (927)
..... + .+|.. .+..++|+|++.+|
T Consensus 329 ~~~~~------------~-------------------------------~~h~~------------~v~~v~~~~~g~~l 353 (410)
T 1vyh_C 329 MCLMT------------L-------------------------------VGHDN------------WVRGVLFHSGGKFI 353 (410)
T ss_dssp EEEEE------------E-------------------------------ECCSS------------CEEEEEECSSSSCE
T ss_pred ceEEE------------E-------------------------------ECCCC------------cEEEEEEcCCCCEE
Confidence 21100 0 01111 12234599999999
Q ss_pred EEeccccccCccccccCchhhc---cccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 856 SSATNSYFFDRISATWPEEKLV---LTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 856 asas~~~~~d~~v~~W~~e~l~---~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
++++ .|+.+++|+..... ...+|...+. +++|+|++.+||||+.||+||+|+
T Consensus 354 ~s~s----~D~~i~vwd~~~~~~~~~~~~h~~~v~--------~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 354 LSCA----DDKTLRVWDYKNKRCMKTLNAHEHFVT--------SLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp EEEE----TTTEEEEECCTTSCCCEEEECCSSCEE--------EEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEe----CCCeEEEEECCCCceEEEEcCCCCcEE--------EEEEcCCCCEEEEEeCCCcEEEEe
Confidence 9987 78999999976432 1334555544 469999999999999999999997
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=299.93 Aligned_cols=269 Identities=19% Similarity=0.285 Sum_probs=224.2
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
..+++++..+++|++|+..++. ..+.+.+|...|.+++|+|++++|++|+.|++|+|||+.+++
T Consensus 25 ~~~l~s~~~dg~v~lWd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~----------- 88 (304)
T 2ynn_A 25 EPWVLTTLYSGRVELWNYETQV-----EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE----------- 88 (304)
T ss_dssp SSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-----------
T ss_pred CCEEEEEcCCCcEEEEECCCCc-----eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc-----------
Confidence 3567888899999999987654 346678999999999999999999999999999999987653
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-c
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q 579 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~ 579 (927)
.+..+.+|.+.|++++|+|+ .
T Consensus 89 ----------------------------------------------------------~~~~~~~h~~~v~~~~~~~~~~ 110 (304)
T 2ynn_A 89 ----------------------------------------------------------KVVDFEAHPDYIRSIAVHPTKP 110 (304)
T ss_dssp ----------------------------------------------------------EEEEEECCSSCEEEEEECSSSS
T ss_pred ----------------------------------------------------------EEEEEeCCCCcEEEEEEcCCCC
Confidence 23356689999999999998 7
Q ss_pred EEEEEeCCCcEEEEeCCCCc-EEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE--eccCCCcEEEE
Q 002407 580 HLLSSSMDKTVRLWHLSSKT-CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD--WNDLHEMVTAA 655 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~-~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~--~~~~~~~V~sl 655 (927)
+|++++.|++|++||+.++. +...+. |...|.+++|+|.++.+|++|+.|++|++||+.+..... ...+...+..+
T Consensus 111 ~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~ 190 (304)
T 2ynn_A 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190 (304)
T ss_dssp EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEE
T ss_pred EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEE
Confidence 89999999999999999874 445555 999999999999667899999999999999998765432 23445789999
Q ss_pred EECC--CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc
Q 002407 656 CYTP--DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL 733 (927)
Q Consensus 656 a~sp--dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~ 733 (927)
+|+| ++.+|++|+.|+.|++||+++++++..+ ..|...|++++|+|+++ +|++++.|++|+|||....
T Consensus 191 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~---------~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL---------EGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE---------ECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTC
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee---------CCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCCC
Confidence 9987 7789999999999999999999887765 48899999999999987 8999999999999997654
Q ss_pred eEEEEeecCCcceEEEEEecCCC--EEEEEECCCcEEEEECCC
Q 002407 734 VHKFKGFRNTNSQISASLTANGR--YVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 734 ~~~~~~~~~~~~v~sv~fspdg~--~Lasgs~Dg~I~IWdl~s 774 (927)
........+...+.+++|+|++. +|++|+.|| +.+|++..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 261 KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred ceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 44444444567789999999875 577777555 88888865
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=312.86 Aligned_cols=295 Identities=16% Similarity=0.186 Sum_probs=222.5
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
..|...|.+++|+|||++|++++ |+++++||..... +. ..... +
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~----~~-~~~~~-----------~------------------- 70 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWL----FK-DPCAA-----------P------------------- 70 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEE----ES-SGGGT-----------T-------------------
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeee----ec-ccccc-----------C-------------------
Confidence 35788899999999999999888 8899999742110 00 00000 0
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEE-----ecC
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF-----SHS 607 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~-----~h~ 607 (927)
..........|...|.+++|+|++.|++++.||+|+|||+.+++++..+ .|.
T Consensus 71 -----------------------~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~ 127 (344)
T 4gqb_B 71 -----------------------NEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHD 127 (344)
T ss_dssp -----------------------CGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCS
T ss_pred -----------------------CcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCC
Confidence 0001112234677899999999999999999999999999998765433 389
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCC-EEEEEECCCeEEEEECCCCeeee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~-~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
..|++|+|+| ++++|++|+.|++|++||+.+++++..+ .|...|++++|+|++. +|++++.|++|++||+++++...
T Consensus 128 ~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 206 (344)
T 4gqb_B 128 DIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS 206 (344)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE
T ss_pred CCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceee
Confidence 9999999999 9999999999999999999999887754 5678999999999885 78999999999999999988776
Q ss_pred ecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCC-CEEEEEECC
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANG-RYVVSASED 764 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg-~~Lasgs~D 764 (927)
.+.. ..+...+++++|+|++..+|++++.|+.|+|||............|...|.+++|+|++ ++|++++.|
T Consensus 207 ~~~~-------~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D 279 (344)
T 4gqb_B 207 QIGC-------SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED 279 (344)
T ss_dssp ECC-----------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETT
T ss_pred eeec-------ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC
Confidence 5432 35667799999999887789999999999999976543333334457789999999998 589999999
Q ss_pred CcEEEEECCCCCCcccccccceeeeeeeecCCC--eEEEEecCCceeEEeecC
Q 002407 765 SYVYVWKYEAESRPSRSKSITVTHSYEHFHCQD--VSVAIPWPGVGDTWGLQD 815 (927)
Q Consensus 765 g~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~--v~vavs~~g~~~i~~~~d 815 (927)
++|+|||+.+++. .....+........|++++ +.+..++++.+.+|.+..
T Consensus 280 ~~i~vwd~~~~~~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 280 CSLAVLDSSLSEL-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp SCEEEECTTCCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred CeEEEEECCCCcE-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 9999999987653 2333444444555666543 233456667766666543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=300.66 Aligned_cols=280 Identities=14% Similarity=0.250 Sum_probs=242.0
Q ss_pred CCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccc
Q 002407 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 419 d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
+...++++|+.+++|++|+....+.......+.+.+|...|++++|+|+|++|++|+.|++|+|||+.+++....+
T Consensus 28 ~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~---- 103 (319)
T 3frx_A 28 GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF---- 103 (319)
T ss_dssp SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----
T ss_pred CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE----
Confidence 3456789999999999999876554444556789999999999999999999999999999999999998876665
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd 578 (927)
.+|...|.++.++|++.++++++.++.+ .+|++.++.+..+.+|...|.++.|+|.
T Consensus 104 -~~h~~~v~~~~~~~~~~~l~s~s~D~~i-----------------------~vwd~~~~~~~~~~~h~~~v~~~~~~~~ 159 (319)
T 3frx_A 104 -VGHKSDVMSVDIDKKASMIISGSRDKTI-----------------------KVWTIKGQCLATLLGHNDWVSQVRVVPN 159 (319)
T ss_dssp -ECCSSCEEEEEECTTSCEEEEEETTSCE-----------------------EEEETTSCEEEEECCCSSCEEEEEECCC
T ss_pred -ccCCCcEEEEEEcCCCCEEEEEeCCCeE-----------------------EEEECCCCeEEEEeccCCcEEEEEEccC
Confidence 4677889999999999999999999887 6777778888999999999999999985
Q ss_pred -------cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCC
Q 002407 579 -------QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE 650 (927)
Q Consensus 579 -------~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~ 650 (927)
..|++++.|++|++||+.+.+....+. |...|.+++|+| ++++|++++.|+.|++||+.+++.+..+..+.
T Consensus 160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 238 (319)
T 3frx_A 160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238 (319)
T ss_dssp ------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECCS
T ss_pred CCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 279999999999999999998887776 999999999999 99999999999999999999999988888888
Q ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
.|.+++|+|++.+|++++.+ .+++|++.............. .....+...+.+++|+|++. +|++++.|+.|+|||.
T Consensus 239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~spdg~-~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFA-GYSKAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQV 315 (319)
T ss_dssp CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCT-TCCGGGCCCEEEEEECTTSS-EEEEEETTSCEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccc-ccccCcCcceeEEEECCCCC-EEEEeecCceEEEEEE
Confidence 99999999999999888754 599999988776654432111 11124567899999999987 8999999999999995
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=307.03 Aligned_cols=274 Identities=16% Similarity=0.314 Sum_probs=218.0
Q ss_pred CCeEEEccCceEEEEeccCccccc--ceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLT--ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~--~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
..++++|+.+++|++|+....+.. .....+.+.+|...|++++|+|++.+|++|+.|++|+|||+.+++
T Consensus 39 ~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~--------- 109 (343)
T 2xzm_R 39 SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT--------- 109 (343)
T ss_dssp CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC---------
T ss_pred CCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc---------
Confidence 356788999999999997654432 123456789999999999999999999999999999999986543
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd 578 (927)
.+..+.+|...|.+++|+|+
T Consensus 110 ------------------------------------------------------------~~~~~~~h~~~v~~v~~sp~ 129 (343)
T 2xzm_R 110 ------------------------------------------------------------TYKRFVGHQSEVYSVAFSPD 129 (343)
T ss_dssp ------------------------------------------------------------EEEEEECCCSCEEEEEECSS
T ss_pred ------------------------------------------------------------EEEEEcCCCCcEEEEEECCC
Confidence 23355689999999999998
Q ss_pred -cEEEEEeCCCcEEEEeCCCCcEEEEE---ecCCceEEEEEccCCC----------CEEEEEECCCcEEEEeCCCCcEEE
Q 002407 579 -QHLLSSSMDKTVRLWHLSSKTCLKIF---SHSDYVTCIQFNPVDD----------RYFISGSLDAKVRIWSIPERQVVD 644 (927)
Q Consensus 579 -~~L~Sgs~DgtV~lWDl~t~~~~~~~---~h~~~V~~v~fsp~dg----------~~L~sgs~Dg~I~IWDl~t~~~v~ 644 (927)
.+|++++.|++|++||+......... .|...|.+++|+| ++ .+|++++.|+.|++||........
T Consensus 130 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 208 (343)
T 2xzm_R 130 NRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYT 208 (343)
T ss_dssp TTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEE
T ss_pred CCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEE
Confidence 78999999999999999854433333 3888999999999 65 789999999999999965444445
Q ss_pred eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 645 WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
...|...|.+++|+|+|++|++|+.|+.|++||+......... ..+...|.+++|+|++. +++++.|+.
T Consensus 209 ~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~---------~~~~~~v~~v~~sp~~~--~la~~~d~~ 277 (343)
T 2xzm_R 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE---------FDAGSTINQIAFNPKLQ--WVAVGTDQG 277 (343)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEE---------EECSSCEEEEEECSSSC--EEEEEESSC
T ss_pred EcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccccee---------ecCCCcEEEEEECCCCC--EEEEECCCC
Confidence 6677889999999999999999999999999999543221111 12445699999999875 455667889
Q ss_pred EEEEECCcc--eE--EEEe---------ecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 725 IRVVDGIDL--VH--KFKG---------FRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 725 I~VwD~~~~--~~--~~~~---------~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|++||.... .. .+.. ..+...+.+++|+|+|++|++|+.||.|++|+++++
T Consensus 278 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 278 VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 999996432 11 2221 134567899999999999999999999999998753
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=308.95 Aligned_cols=316 Identities=14% Similarity=0.154 Sum_probs=252.2
Q ss_pred ecCCCCeEEEccCceEEEEecc----Ccccc-----cceeeeeEee------cCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 002407 417 TDDSQDVSFHGQERVRVRQYGK----SCKDL-----TALYKCQEIQ------AHNGSIWSIKFSLDGRYLASAGEDCVIH 481 (927)
Q Consensus 417 ~~d~~~~~~~g~~~~~V~i~~~----~s~~l-----~~l~~~q~L~------gH~~~I~~vafSpdG~~LaSgs~DgtVr 481 (927)
..++..++++|..++.|++|+. ..++. ........+. +|.+.|++|+|+|++++||+|+.||.|+
T Consensus 54 s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 133 (425)
T 1r5m_A 54 NPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELR 133 (425)
T ss_dssp CSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEE
Confidence 3444447888899999999998 66552 1111112222 2788999999999999999999999999
Q ss_pred EEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCce
Q 002407 482 VWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPI 560 (927)
Q Consensus 482 VWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i 560 (927)
||+ .+++....+ ..+...+..+.|+|++.+++++..++.+.. |++ .++.+
T Consensus 134 i~~-~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i-----------------------wd~~~~~~~ 184 (425)
T 1r5m_A 134 LWN-KTGALLNVL-----NFHRAPIVSVKWNKDGTHIISMDVENVTIL-----------------------WNVISGTVM 184 (425)
T ss_dssp EEE-TTSCEEEEE-----CCCCSCEEEEEECTTSSEEEEEETTCCEEE-----------------------EETTTTEEE
T ss_pred EEe-CCCCeeeec-----cCCCccEEEEEECCCCCEEEEEecCCeEEE-----------------------EECCCCcEE
Confidence 999 445444443 467788999999999999999888887743 333 23445
Q ss_pred EEEccCCCC---------------EEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEE
Q 002407 561 CSFQGHLDD---------------VLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFI 624 (927)
Q Consensus 561 ~~l~gH~~~---------------V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~ 624 (927)
..+..|... +.++.|++++.+++++.|+.|++||+.+++.+..+. |...|.+++|+| ++++|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 263 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLL 263 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEE
Confidence 555556555 999999999999999999999999999998887775 999999999999 999999
Q ss_pred EEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCe
Q 002407 625 SGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 625 sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
+++.|+.|++||+.+++.+..+ .+...|.+++|+|++ +|++++.|+.|++||+.+++....+ ..|...|
T Consensus 264 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~---------~~~~~~i 333 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS---------IVDGVPI 333 (425)
T ss_dssp EEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE---------ECTTCCE
T ss_pred EEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec---------ccCCccE
Confidence 9999999999999988766544 477899999999999 9999999999999999998877664 3678899
Q ss_pred EEEEEcCCCCcEEEEEECCCcEEEEECCcce--------------------EEEEeecCCc--ceEEEEEecCCCEEEEE
Q 002407 704 TGFQFAPGSSSEVLVTSADSRIRVVDGIDLV--------------------HKFKGFRNTN--SQISASLTANGRYVVSA 761 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~--------------------~~~~~~~~~~--~v~sv~fspdg~~Lasg 761 (927)
++++|+|++. +|++++.|+.|++||..... .......+.. .|.+++|+|++++|+++
T Consensus 334 ~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (425)
T 1r5m_A 334 FAGRISQDGQ-KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVA 412 (425)
T ss_dssp EEEEECTTSS-EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred EEEEEcCCCC-EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEE
Confidence 9999999987 89999999999999965433 2223333333 89999999999999999
Q ss_pred ECCCcEEEEECC
Q 002407 762 SEDSYVYVWKYE 773 (927)
Q Consensus 762 s~Dg~I~IWdl~ 773 (927)
+.||.|+||+++
T Consensus 413 ~~dg~i~iw~~~ 424 (425)
T 1r5m_A 413 YSLQEGSVVAIP 424 (425)
T ss_dssp ESSSCCEEEECC
T ss_pred ecCceEEEEeec
Confidence 999999999986
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=304.56 Aligned_cols=288 Identities=17% Similarity=0.214 Sum_probs=235.1
Q ss_pred CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 557 ~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
.+....+.+|.+.|++++|+|+ .+|++++.|++|+|||..+++....+. |...|.+++|+| ++.+|++++.|+.+++
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSV 132 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEE
Confidence 3667889999999999999999 789999999999999999998888777 888999999999 9999999999999999
Q ss_pred EeCCCC-------cEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE
Q 002407 635 WSIPER-------QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 635 WDl~t~-------~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
|++... .......|...|.+++|+|++..|++++.|++|++||+.+++....+ ..|...|.+++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~---------~~h~~~v~~~~ 203 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF---------HGHGADVLCLD 203 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE---------ECCSSCEEEEE
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE---------cCCCCCeEEEE
Confidence 998643 23345567789999999999999999999999999999999877664 37889999999
Q ss_pred EcCCC-CcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccce
Q 002407 708 FAPGS-SSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITV 786 (927)
Q Consensus 708 fspdg-~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~ 786 (927)
|+|.. ..+|++++.|+.|++||............+...|.+++|+|++.+|++++.|+.|+|||++......
T Consensus 204 ~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~------- 276 (354)
T 2pbi_B 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA------- 276 (354)
T ss_dssp ECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-------
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-------
Confidence 98853 2489999999999999976554444444567789999999999999999999999999997632100
Q ss_pred eeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCc
Q 002407 787 THSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDR 866 (927)
Q Consensus 787 ~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~ 866 (927)
.+... ... .....++|+|++.+|++++ .|+
T Consensus 277 -----~~~~~-----------------------------~~~------------~~~~~~~~s~~g~~l~~g~----~d~ 306 (354)
T 2pbi_B 277 -----IYSKE-----------------------------SII------------FGASSVDFSLSGRLLFAGY----NDY 306 (354)
T ss_dssp -----EECCT-----------------------------TCC------------SCEEEEEECTTSSEEEEEE----TTS
T ss_pred -----EEcCC-----------------------------Ccc------------cceeEEEEeCCCCEEEEEE----CCC
Confidence 00000 000 1123356999999999987 788
Q ss_pred cccccCchhhc---cccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 867 ISATWPEEKLV---LTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 867 ~v~~W~~e~l~---~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
.+++|+..+.. ...+|..++. +++|+|||++||||+.||+|++|.
T Consensus 307 ~i~vwd~~~~~~~~~l~~h~~~v~--------~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 307 TINVWDVLKGSRVSILFGHENRVS--------TLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEETTTCSEEEEECCCSSCEE--------EEEECTTSSCEEEEETTSEEEEEC
T ss_pred cEEEEECCCCceEEEEECCCCcEE--------EEEECCCCCEEEEEcCCCCEEecC
Confidence 99999875332 2345665555 469999999999999999999995
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-32 Score=300.42 Aligned_cols=268 Identities=16% Similarity=0.253 Sum_probs=233.0
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
...+++|+.+++|++|+...+.+ .....+.+|...|.+++|++++.+|++++.|++|+|||+.+++.+..+.
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~~---~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~----- 119 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDERL---DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSID----- 119 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-----
T ss_pred CCEEEEEcCCCCEEEEECCCCCe---eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEe-----
Confidence 34688899999999999765533 2345689999999999999999999999999999999999988766653
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
.+...+..++|+|++.+++++..++.+. +|++ .++....+..|...|.+++|+|+
T Consensus 120 ~~~~~~~~~~~spdg~~l~~g~~dg~v~-----------------------i~~~~~~~~~~~~~~~~~~v~~~~~spdg 176 (321)
T 3ow8_A 120 AGPVDAWTLAFSPDSQYLATGTHVGKVN-----------------------IFGVESGKKEYSLDTRGKFILSIAYSPDG 176 (321)
T ss_dssp CCTTCCCCEEECTTSSEEEEECTTSEEE-----------------------EEETTTCSEEEEEECSSSCEEEEEECTTS
T ss_pred CCCccEEEEEECCCCCEEEEEcCCCcEE-----------------------EEEcCCCceeEEecCCCceEEEEEECCCC
Confidence 3445567789999999999998888773 3333 34566778889999999999999
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAAC 656 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla 656 (927)
.+|++++.|++|++||+.+++++..+. |...|.+++|+| ++++|++++.|+.|++||+++++++.. ..|...|.+++
T Consensus 177 ~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (321)
T 3ow8_A 177 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 255 (321)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence 789999999999999999999998887 999999999999 999999999999999999999887764 45667899999
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 657 YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 657 ~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
|+|++++|++++.|+.|++||+.+++++..+ ..|...|++++|+|++. +|++++.|+.|+|||.
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~---------~~h~~~v~~v~~s~~g~-~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF---------FDHQDQVWGVKYNGNGS-KIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEE---------CCCSSCEEEEEECTTSS-EEEEEETTCCEEEEEC
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE---------cCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEeC
Confidence 9999999999999999999999999887765 37889999999999887 8999999999999994
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-32 Score=295.43 Aligned_cols=252 Identities=19% Similarity=0.265 Sum_probs=205.8
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
..+.+|.+.|++++|+|+|++||||+.|++|+||++....
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~---------------------------------------- 42 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET---------------------------------------- 42 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC----------------------------------------
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC----------------------------------------
Confidence 3468999999999999999999999999999999985321
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCc--EEEEE
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKT--CLKIF 604 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~--~~~~~ 604 (927)
.+.+..+.+|.+.|++++|+++ .+|++++.|++|+|||+.+++ .+..+
T Consensus 43 ---------------------------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~ 95 (297)
T 2pm7_B 43 ---------------------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH 95 (297)
T ss_dssp ---------------------------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE
T ss_pred ---------------------------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe
Confidence 0234567899999999999863 689999999999999999874 44445
Q ss_pred e-cCCceEEEEEccCC--CCEEEEEECCCcEEEEeCCCCc---EEEeccCCCcEEEEEECCC-------------CCEEE
Q 002407 605 S-HSDYVTCIQFNPVD--DRYFISGSLDAKVRIWSIPERQ---VVDWNDLHEMVTAACYTPD-------------GQGAL 665 (927)
Q Consensus 605 ~-h~~~V~~v~fsp~d--g~~L~sgs~Dg~I~IWDl~t~~---~v~~~~~~~~V~sla~spd-------------g~~l~ 665 (927)
. |...|.+++|+| + +.+|++++.|+.|++||++++. ......|...|.+++|+|+ +++|+
T Consensus 96 ~~h~~~v~~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~ 174 (297)
T 2pm7_B 96 AVHSASVNSVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV 174 (297)
T ss_dssp CCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEE
T ss_pred ecCCCceeEEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEE
Confidence 4 899999999999 5 7899999999999999998753 3345667789999999997 57999
Q ss_pred EEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC--CcEEEEEECCCcEEEEECCcc----e-EEEE
Q 002407 666 VGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS--SSEVLVTSADSRIRVVDGIDL----V-HKFK 738 (927)
Q Consensus 666 tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg--~~~Llsgs~Dg~I~VwD~~~~----~-~~~~ 738 (927)
+|+.|+.|+|||++++....... .....|...|++++|+|++ ..+|++++.|++|+|||.... . ..+.
T Consensus 175 sgs~D~~v~lwd~~~~~~~~~~~-----~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~ 249 (297)
T 2pm7_B 175 TGGADNLVKIWKYNSDAQTYVLE-----STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLK 249 (297)
T ss_dssp EEETTSCEEEEEEETTTTEEEEE-----EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESS
T ss_pred EEcCCCcEEEEEEcCCCceEEEE-----EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeee
Confidence 99999999999998765211110 1124799999999999985 458999999999999996432 1 2222
Q ss_pred eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 739 GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 739 ~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
...+...+.+++|+|+|++||+++.|+.|+||+...
T Consensus 250 ~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 250 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 234567899999999999999999999999999864
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=316.89 Aligned_cols=318 Identities=12% Similarity=0.152 Sum_probs=249.9
Q ss_pred cCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC----cccceeecccccCcc
Q 002407 428 QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES----ERKGELLEKQEDGHL 503 (927)
Q Consensus 428 ~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~----~~~~~l~~~~~~~~~ 503 (927)
..++.|++|+....+..... +. ..|...|++++|+|++++||+|+.||.|+||++.+. +.... ...|.
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~--~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~-----~~~h~ 113 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPI--AS-LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMAR-----FSNHS 113 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCS--CC-CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEE-----CCCSS
T ss_pred CCCCeEEEEEccCCCCCcEE--EE-EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhh-----ccCCc
Confidence 78889999998876543211 22 358999999999999999999999999999999872 22222 24677
Q ss_pred ccEEEEccCCC-CCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cE
Q 002407 504 NMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QH 580 (927)
Q Consensus 504 ~~v~~v~~spd-~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~ 580 (927)
..+.++.|+|+ +.+++++..++.+..+........... .....+..+.+|...|.+++|+|+ .+
T Consensus 114 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 180 (416)
T 2pm9_A 114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN-------------YTPLTPGQSMSSVDEVISLAWNQSLAHV 180 (416)
T ss_dssp SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT-------------CCCBCCCCSCCSSCCCCEEEECSSCTTE
T ss_pred cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc-------------ccccccccccCCCCCeeEEEeCCCCCcE
Confidence 88999999998 889999988888755443221100000 000011234679999999999997 57
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEe-c------CCceEEEEEccCCCCEEEEEECCC---cEEEEeCCCC-cEEEec--c
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFS-H------SDYVTCIQFNPVDDRYFISGSLDA---KVRIWSIPER-QVVDWN--D 647 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~-h------~~~V~~v~fsp~dg~~L~sgs~Dg---~I~IWDl~t~-~~v~~~--~ 647 (927)
|++++.|+.|++||+.+++.+..+. + ...|.+++|+|.+..+|++++.|+ .|++||++++ +.+..+ .
T Consensus 181 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~ 260 (416)
T 2pm9_A 181 FASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG 260 (416)
T ss_dssp EEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC
T ss_pred EEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC
Confidence 9999999999999999999988887 3 788999999993347999999999 9999999986 444444 4
Q ss_pred CCCcEEEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 648 LHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 648 ~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
+...|.+++|+| ++.+|++++.|+.|++||+.+++.+..+ ..|...|++++|+|+++.+|++++.|+.|+
T Consensus 261 ~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~---------~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~ 331 (416)
T 2pm9_A 261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF---------PARGNWCFKTKFAPEAPDLFACASFDNKIE 331 (416)
T ss_dssp CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE---------ECSSSCCCCEEECTTCTTEEEECCSSSEEE
T ss_pred ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee---------cCCCCceEEEEECCCCCCEEEEEecCCcEE
Confidence 778999999999 9999999999999999999998877664 378889999999999866999999999999
Q ss_pred EEECCcceEEE-----------------Ee-----e-------------cCCcceEEEEEecCCCEEEEEECCCcEEEEE
Q 002407 727 VVDGIDLVHKF-----------------KG-----F-------------RNTNSQISASLTANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 727 VwD~~~~~~~~-----------------~~-----~-------------~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWd 771 (927)
|||........ .. + .+...+..++|+|+|++|++++.|+.|+||+
T Consensus 332 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 332 VQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp EEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred EEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 99954322100 00 0 0345566899999999999999999999999
Q ss_pred CCCC
Q 002407 772 YEAE 775 (927)
Q Consensus 772 l~s~ 775 (927)
+.++
T Consensus 412 ~~~~ 415 (416)
T 2pm9_A 412 PKIS 415 (416)
T ss_dssp CCCC
T ss_pred eccC
Confidence 9864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=296.60 Aligned_cols=305 Identities=16% Similarity=0.213 Sum_probs=228.0
Q ss_pred CceEEEccCCC-CEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEE--EE--ecCCceEEEEEccCCCCEEEEEECCCc
Q 002407 558 KPICSFQGHLD-DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK--IF--SHSDYVTCIQFNPVDDRYFISGSLDAK 631 (927)
Q Consensus 558 k~i~~l~gH~~-~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~--~~--~h~~~V~~v~fsp~dg~~L~sgs~Dg~ 631 (927)
+.+..+.+|.. .|++++|+|+ .+|++++.|++|+|||+.++.... .+ .|...|.+++|+| ++++|++++.|+.
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDAT 84 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCc
Confidence 45678889988 9999999999 789999999999999999886432 22 3999999999999 9999999999999
Q ss_pred EEEEeCCCCc--EE-EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE
Q 002407 632 VRIWSIPERQ--VV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 632 I~IWDl~t~~--~v-~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
|++|++..+. ++ ....|...|.+++|+|++++|++++.|+.|++||+..+....... ....|...|++++|
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~------~~~~h~~~v~~~~~ 158 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS------VLNSHTQDVKHVVW 158 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEE------EECCCCSCEEEEEE
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEE------EecCcCCCeEEEEE
Confidence 9999998764 33 355677899999999999999999999999999998764322111 12478899999999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCcc--eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccce
Q 002407 709 APGSSSEVLVTSADSRIRVVDGIDL--VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITV 786 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~VwD~~~~--~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~ 786 (927)
+|++. +|++++.|+.|++||.... ........+...|.+++|+|+|++|++++.|+.|+||++............
T Consensus 159 ~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~-- 235 (345)
T 3fm0_A 159 HPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS-- 235 (345)
T ss_dssp CSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred CCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee--
Confidence 99987 8999999999999995432 333344456788999999999999999999999999997543322111000
Q ss_pred eeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCc
Q 002407 787 THSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDR 866 (927)
Q Consensus 787 ~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~ 866 (927)
. ..... ..+ ..+. ..+. ..+..++|+|++..|++++ .|+
T Consensus 236 -~------~~~~~--------~~~--------~~~~--~~h~------------~~v~~v~~~~~~~~l~s~~----~d~ 274 (345)
T 3fm0_A 236 -G------SDPSW--------KCI--------CTLS--GFHS------------RTIYDIAWCQLTGALATAC----GDD 274 (345)
T ss_dssp ----------CEE--------EEE--------EEEC--SSCS------------SCEEEEEECTTTCCEEEEE----TTS
T ss_pred -c------cCCcc--------cee--------EEec--CCCC------------CcEEEEEEecCCCEEEEEe----CCC
Confidence 0 00000 000 0000 0011 1233467999999999987 788
Q ss_pred cccccCchhhcc------------ccccCCCceecccCCCCCcccCCCC-CEEEEEcCCCcEEEeecC
Q 002407 867 ISATWPEEKLVL------------TARNRSPRTSLDISNGISSSISAWG-MVIVTAGLRGEIRAYQNF 921 (927)
Q Consensus 867 ~v~~W~~e~l~~------------~~~~~s~v~s~~~~~~~~~a~S~dG-~vLvTgs~DG~IrvW~~~ 921 (927)
.+++|+...... ..+|...+. +++|+|++ .+||||+.||+|++|+.-
T Consensus 275 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~--------~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 275 AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVN--------CVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEE--------EEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred eEEEEEeCCCCCcceeeEEEEeeecccccCcEe--------EeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 999997653210 123443333 57999998 599999999999999943
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=307.35 Aligned_cols=280 Identities=16% Similarity=0.194 Sum_probs=193.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccc
Q 002407 461 SIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKS 540 (927)
Q Consensus 461 ~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~ 540 (927)
.+.+.+++.|+.+.+ +.....|++.... ...|...|.+++|+|||.+|++++.+... .+. ..+
T Consensus 10 g~d~g~~~~~~~~~g-~~~~~~w~~p~~~---------p~~H~~~V~~v~fSpDG~~las~s~d~~~-~wd--~~v---- 72 (357)
T 4g56_B 10 GVDLGTENLYFQSNG-SSKGSAWGRPVTA---------PACMEVQIGAVRYRRDGALLLAASSLSSR-TWG--GSI---- 72 (357)
T ss_dssp ----------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSS-SCC--EEE----
T ss_pred CCCCCccceEEecCC-CccccccCCCCCC---------cccccCCEEEEEECCCCCEEEEEcCCCCc-ccc--CeE----
Confidence 456667776655544 6778999875432 24577889999999999999998764321 000 000
Q ss_pred cccCcccccceEeec-----CCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEE-----EecCCce
Q 002407 541 LSLDHMVVPETVFAL-----SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKI-----FSHSDYV 610 (927)
Q Consensus 541 ~~~~~~~~~~~v~~~-----s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~-----~~h~~~V 610 (927)
.+|.. .........+|...|++++|+|++.+++++.|++|+|||+.+++.+.. ..|...|
T Consensus 73 ----------~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V 142 (357)
T 4g56_B 73 ----------WVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIV 142 (357)
T ss_dssp ----------EEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCE
T ss_pred ----------EEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCE
Confidence 11211 112334556799999999999999999999999999999998865432 2489999
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCC-EEEEEECCCeEEEEECCCCeeeeecc
Q 002407 611 TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 611 ~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~-~l~tgs~Dg~I~IwDl~~~~~~~~~~ 688 (927)
++|+|+| ++++|++++.|+.|++||+.+++++..+ .|...|++++|+|++. ++++++.|+.|++||+++++......
T Consensus 143 ~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~ 221 (357)
T 4g56_B 143 KTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID 221 (357)
T ss_dssp EEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC
T ss_pred EEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee
Confidence 9999999 9999999999999999999999887654 5668999999999875 78999999999999999887665443
Q ss_pred cccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCC-CEEEEEECCCcE
Q 002407 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANG-RYVVSASEDSYV 767 (927)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg-~~Lasgs~Dg~I 767 (927)
. ..+...+++++|+|++..+|++++.|+.|++||............+...|.+++|+|++ ++|++++.|++|
T Consensus 222 ~-------~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i 294 (357)
T 4g56_B 222 F-------CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV 294 (357)
T ss_dssp C-------TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred e-------ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence 2 35677899999999987789999999999999976433333333456789999999987 589999999999
Q ss_pred EEEECCCC
Q 002407 768 YVWKYEAE 775 (927)
Q Consensus 768 ~IWdl~s~ 775 (927)
+|||++++
T Consensus 295 ~iwd~~~~ 302 (357)
T 4g56_B 295 AVLDADFS 302 (357)
T ss_dssp EEECTTSC
T ss_pred EEEECCCC
Confidence 99998753
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=302.21 Aligned_cols=294 Identities=16% Similarity=0.167 Sum_probs=236.3
Q ss_pred eeeeEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCC-CCCeecccccC
Q 002407 447 YKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP-EPTSLSPKHLD 524 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vafSpdG-~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~sp-d~~~la~~~~~ 524 (927)
...+.+.+|.+.|++|+|+|++ ++||+|+.||.|+|||+.+++....+. ..++...|..+.|+| ++.+++++..+
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ---GMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC---CCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee---cCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 3445678999999999999999 999999999999999999877655442 235778999999999 67889888888
Q ss_pred CceeeecccccccccccccCcccccceEeecCCCceEEEccC---CCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcE
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH---LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC 600 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH---~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~ 600 (927)
+.+ .+|++..+.+..+..| ...|.+++|+|+ .+|++++.|+.|++||+. +++
T Consensus 141 ~~i-----------------------~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~ 196 (383)
T 3ei3_B 141 GAT-----------------------TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHE 196 (383)
T ss_dssp TEE-----------------------EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCE
T ss_pred CEE-----------------------EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCE
Confidence 877 4566666666666554 488999999998 889999999999999994 666
Q ss_pred EEEEe-cCCceEEEEEccCCCC-EEEEEECCCcEEEEeCCC----CcEEEeccCCCcEEEEEECC-CCCEEEEEECCCeE
Q 002407 601 LKIFS-HSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPE----RQVVDWNDLHEMVTAACYTP-DGQGALVGSYKGSC 673 (927)
Q Consensus 601 ~~~~~-h~~~V~~v~fsp~dg~-~L~sgs~Dg~I~IWDl~t----~~~v~~~~~~~~V~sla~sp-dg~~l~tgs~Dg~I 673 (927)
+..+. |...|.+++|+| ++. +|++++.|+.|++||+.+ +.++....+...|.+++|+| ++++|++++.|+.|
T Consensus 197 ~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i 275 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEI 275 (383)
T ss_dssp EEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEE
T ss_pred EEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcE
Confidence 66665 999999999999 777 999999999999999987 67777778889999999999 99999999999999
Q ss_pred EEEECCCCeeeeecccccccccccCCC----------CCeEEEEEcCCCCcEEEEEECCCcEEEEECC--cceEEEEeec
Q 002407 674 HLYNTSENKLQQKSPINLQNKKKRSHQ----------RKITGFQFAPGSSSEVLVTSADSRIRVVDGI--DLVHKFKGFR 741 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i~~~~~~~~~h~----------~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~--~~~~~~~~~~ 741 (927)
++||+.++.....+.... .....|. ..+..++|+|++.. +++.|+.|+|||.. ..+..+..+.
T Consensus 276 ~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~~~~~~l~~~~ 350 (383)
T 3ei3_B 276 RVYSSYDWSKPDQIIIHP--HRQFQHLTPIKATWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSGGLVHQLRDPN 350 (383)
T ss_dssp EEEETTBTTSCSEEEECC--BCCCTTSCCCCCEECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTCCEEEEECBTT
T ss_pred EEEECCCCcccccccccc--ccccccccceEEeccCCCCceEEEecCCccc---ccCCCCeEEEEecCCCceeeeecCCC
Confidence 999999877654432110 0011122 34445666666642 66789999999964 4455555554
Q ss_pred CCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 742 NTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 742 ~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+...+..++|+|++++|++++ |+.|+||++++
T Consensus 351 ~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 351 AAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 566677789999999999997 99999999975
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=310.78 Aligned_cols=299 Identities=15% Similarity=0.233 Sum_probs=234.7
Q ss_pred CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 557 ~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
.....++.+|.+.|++++|+|+ .+|++|+.|++|+|||+.+++.+..+. |...|.+++|+| ++++|++|+.|+.|++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSI 134 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEE
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEE
Confidence 3566789999999999999999 789999999999999999999988887 999999999999 9999999999999999
Q ss_pred EeCCCCc-------E-EEeccCCCcEEEEEECCC-CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEE
Q 002407 635 WSIPERQ-------V-VDWNDLHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG 705 (927)
Q Consensus 635 WDl~t~~-------~-v~~~~~~~~V~sla~spd-g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts 705 (927)
||+.+.. + .....|...+.++.|.|+ +..|++|+.|++|++||+.+++....+.... ...|...|.+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~----~~~h~~~v~~ 210 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF----PSGHTADVLS 210 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS----SSSCCSCEEE
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc----CCCCccCeEE
Confidence 9987532 1 124566778999999996 4579999999999999999988776543211 2478899999
Q ss_pred EEEcCCCCcEEEEEECCCcEEEEECC---cceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccccc
Q 002407 706 FQFAPGSSSEVLVTSADSRIRVVDGI---DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSK 782 (927)
Q Consensus 706 l~fspdg~~~Llsgs~Dg~I~VwD~~---~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~ 782 (927)
+.|.+.+..+|++++.|+.|++||.. .....+.+ |...|.+++|+|++++|++++.|++|+|||+.++......
T Consensus 211 ~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~- 287 (380)
T 3iz6_a 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG--HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY- 287 (380)
T ss_dssp EEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC--CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEE-
T ss_pred EEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC--cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEe-
Confidence 99988555699999999999999965 33444444 5677999999999999999999999999999874321100
Q ss_pred ccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEecccc
Q 002407 783 SITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSY 862 (927)
Q Consensus 783 ~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~ 862 (927)
.. .... ... .......++|+|+|.+|++++
T Consensus 288 -----------~~------------------~~~~-------~~~-----------~~~~v~~~~~s~~g~~l~~g~--- 317 (380)
T 3iz6_a 288 -----------NR------------------EPDR-------NDN-----------ELPIVTSVAFSISGRLLFAGY--- 317 (380)
T ss_dssp -----------CC------------------CCSS-------SCC-----------SSCSCSEEEECSSSSEEEEEC---
T ss_pred -----------cc------------------cccc-------ccc-----------ccCceEEEEECCCCCEEEEEE---
Confidence 00 0000 000 001234567999999999987
Q ss_pred ccCccccccCchhhcc-------ccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeecCC
Q 002407 863 FFDRISATWPEEKLVL-------TARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNFG 922 (927)
Q Consensus 863 ~~d~~v~~W~~e~l~~-------~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~~g 922 (927)
.|+.+.+|+...... ..+|...+. +++|+|||++|+||+.||+|++|+.-|
T Consensus 318 -~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~--------~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 318 -SNGDCYVWDTLLAEMVLNLGTLQNSHEGRIS--------CLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp -TTSCEEEEETTTCCEEEEECCSCSSCCCCCC--------EEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred -CCCCEEEEECCCCceEEEEecccCCCCCceE--------EEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 788999998653211 123444443 579999999999999999999999655
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=302.43 Aligned_cols=295 Identities=12% Similarity=0.171 Sum_probs=239.5
Q ss_pred eeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc------ccceeecccccCccccEEEEccCCC----C--
Q 002407 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE------RKGELLEKQEDGHLNMLLLANGSPE----P-- 515 (927)
Q Consensus 448 ~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~------~~~~l~~~~~~~~~~~v~~v~~spd----~-- 515 (927)
..+.+.+|.+.|++|+|+| ++||+|+.||+|+||++.+++ ....+ ..+...|.++.|+|+ +
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-----FVHKSGLHHVDVLQAIERDAFE 80 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-----ECCTTCEEEEEEEEEEETTTEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-----ecCCCcEEEEEEecccccCCcc
Confidence 3466789999999999999 799999999999999999877 33332 367788999999999 8
Q ss_pred -CeecccccCCceeeecccccccccccccCcccccceEeecCC-Cc-----eEEEccC-----CCCEEEEEec----CC-
Q 002407 516 -TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KP-----ICSFQGH-----LDDVLDLSWS----KS- 578 (927)
Q Consensus 516 -~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~-k~-----i~~l~gH-----~~~V~~l~~s----pd- 578 (927)
.+++++..++.+..+ ++.. +. +..+.+| ...|.+++|+ |+
T Consensus 81 ~~~l~s~~~dg~i~iw-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 137 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFY-----------------------RITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL 137 (397)
T ss_dssp EEEEEEEETTSCEEEE-----------------------EEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----
T ss_pred ccEEEEEcCCCCEEEE-----------------------EccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC
Confidence 899998888877433 3322 22 6778888 5999999999 88
Q ss_pred cE-EEEEeCCCcEEEEeCCC------CcEEE-----EEe--------cCCceEEEEEccCCCCEEEEEECCCcEEEEeCC
Q 002407 579 QH-LLSSSMDKTVRLWHLSS------KTCLK-----IFS--------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (927)
Q Consensus 579 ~~-L~Sgs~DgtV~lWDl~t------~~~~~-----~~~--------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~ 638 (927)
.+ |++++.|+.|++||+.+ ++.+. .+. |...|.+++|+| ++ +|++++.|+.|++||++
T Consensus 138 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~ 215 (397)
T 1sq9_A 138 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELS 215 (397)
T ss_dssp CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETT
T ss_pred ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECC
Confidence 77 99999999999999988 55544 442 788999999999 88 99999999999999999
Q ss_pred CCcEEEecc----C---CCcEEEEEECCCCCEEEEEECC---CeEEEEECCCCeeeeeccccccc----ccccCCCCCeE
Q 002407 639 ERQVVDWND----L---HEMVTAACYTPDGQGALVGSYK---GSCHLYNTSENKLQQKSPINLQN----KKKRSHQRKIT 704 (927)
Q Consensus 639 t~~~v~~~~----~---~~~V~sla~spdg~~l~tgs~D---g~I~IwDl~~~~~~~~~~i~~~~----~~~~~h~~~Vt 704 (927)
+++.+..+. + ...|.+++|+|++++|++++.| +.|++||+.+++....+...... .....|...|+
T Consensus 216 ~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 295 (397)
T 1sq9_A 216 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 295 (397)
T ss_dssp TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE
T ss_pred CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEE
Confidence 988876555 4 7899999999999999999999 99999999998877665310000 00011889999
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEee------cC---------------CcceEEEEEecCC--------
Q 002407 705 GFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGF------RN---------------TNSQISASLTANG-------- 755 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~------~~---------------~~~v~sv~fspdg-------- 755 (927)
+++|+|++. +|++++.|+.|+|||........... .+ ...|.+++|+|++
T Consensus 296 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~ 374 (397)
T 1sq9_A 296 SLSFNDSGE-TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGAD 374 (397)
T ss_dssp EEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCT
T ss_pred EEEECCCCC-EEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccc
Confidence 999999887 89999999999999976554444333 44 7889999999998
Q ss_pred --CEEEEEECCCcEEEEECCCC
Q 002407 756 --RYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 756 --~~Lasgs~Dg~I~IWdl~s~ 775 (927)
++|++++.||.|+||++.++
T Consensus 375 ~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 375 LNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TSCEEEEEETTTEEEEEEEEC-
T ss_pred ccceEEEecCCCcEEEEEcCCC
Confidence 79999999999999999875
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-30 Score=287.87 Aligned_cols=289 Identities=15% Similarity=0.257 Sum_probs=243.4
Q ss_pred eeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
.....|.+|.+.|++|+|+|+|++||+|+.||.|+|||+.+++....+ ..+...+..+.|+|++.+++++..++.
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~~~dg~ 97 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-----DGHTGTIWSIDVDCFTKYCVTGSADYS 97 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-----hhcCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 444668999999999999999999999999999999999988876665 467788999999999999999988887
Q ss_pred eeeecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecCC-cEEEEEeCC-----CcEEEEeCCCCc
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD-----KTVRLWHLSSKT 599 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~D-----gtV~lWDl~t~~ 599 (927)
+ .+|++. ++.+..+. |...|.+++|+|+ .+|++++.+ +.|++||+....
T Consensus 98 i-----------------------~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~ 153 (369)
T 3zwl_B 98 I-----------------------KLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS 153 (369)
T ss_dssp E-----------------------EEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred E-----------------------EEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence 7 445543 34555555 8899999999998 789999998 999999987653
Q ss_pred E-----------EEEE-ecCC--ceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEE-eccCCCcEEEEEECCCCCE
Q 002407 600 C-----------LKIF-SHSD--YVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVD-WNDLHEMVTAACYTPDGQG 663 (927)
Q Consensus 600 ~-----------~~~~-~h~~--~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~-~~~~~~~V~sla~spdg~~ 663 (927)
. +..+ .|.. .+.+++|+| ++++|++++.||.|++||+.+ .+.+. ...+...|.+++|+|++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (369)
T 3zwl_B 154 ATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTY 232 (369)
T ss_dssp TTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred cceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCE
Confidence 2 2222 2555 899999999 999999999999999999998 56555 4456789999999999999
Q ss_pred EEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC--------------cEEEEE
Q 002407 664 ALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS--------------RIRVVD 729 (927)
Q Consensus 664 l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg--------------~I~VwD 729 (927)
|++++.|+.|++||+.+++....+ .+...+..++|+|++. ++++++.++ .|++||
T Consensus 233 l~~~~~d~~i~v~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 233 FITSSRDTNSFLVDVSTLQVLKKY----------ETDCPLNTAVITPLKE-FIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEE----------ECSSCEEEEEECSSSS-EEEEEECCC-------------CEEEEEE
T ss_pred EEEecCCceEEEEECCCCceeeee----------cCCCCceeEEecCCCc-eEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 999999999999999998877664 3667899999999987 788888887 899999
Q ss_pred CCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 730 GIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 730 ~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
............+...|.+++|+|++++|++++.||.|+||+++.+.
T Consensus 302 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 302 KIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred cCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 76555544555567889999999999999999999999999998753
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-31 Score=322.82 Aligned_cols=289 Identities=22% Similarity=0.374 Sum_probs=235.2
Q ss_pred eeEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 449 CQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG-~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
...|++|++.|++|+|+|++ ++|+||+.|++|+||++.+.............+|...|.++.++|++.++++++.++.+
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 34678999999999999875 79999999999999999875443222223346788899999999999999999999888
Q ss_pred eeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEE-
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF- 604 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~- 604 (927)
.+|++ .++.+..+.+|...|++++|+|+ .+|++++.|++|+|||+.........
T Consensus 455 -----------------------~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~ 511 (694)
T 3dm0_A 455 -----------------------RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE 511 (694)
T ss_dssp -----------------------EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred -----------------------EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc
Confidence 44554 34567788999999999999998 78999999999999998765444433
Q ss_pred ---ecCCceEEEEEccCCC--CEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEEC
Q 002407 605 ---SHSDYVTCIQFNPVDD--RYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNT 678 (927)
Q Consensus 605 ---~h~~~V~~v~fsp~dg--~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl 678 (927)
.|...|.+++|+| ++ .+|++++.|+.|++||+.++++... ..|...|++++|+|++++|++|+.||.|++||+
T Consensus 512 ~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~ 590 (694)
T 3dm0_A 512 GGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590 (694)
T ss_dssp STTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEET
T ss_pred CCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 2888999999999 64 6899999999999999999887764 456789999999999999999999999999999
Q ss_pred CCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce--EEEEee----------------
Q 002407 679 SENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV--HKFKGF---------------- 740 (927)
Q Consensus 679 ~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~--~~~~~~---------------- 740 (927)
.+++.+..+ .+...|.+++|+|++. +++++.++.|+|||..... ..+..+
T Consensus 591 ~~~~~~~~~----------~~~~~v~~~~~sp~~~--~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (694)
T 3dm0_A 591 AEGKKLYSL----------EANSVIHALCFSPNRY--WLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT 658 (694)
T ss_dssp TTTEEEECC----------BCSSCEEEEEECSSSS--EEEEEETTEEEEEETTTTEEEEEECCCCC--------------
T ss_pred CCCceEEEe----------cCCCcEEEEEEcCCCc--EEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccC
Confidence 999876553 3456799999999874 4555667779999975433 222211
Q ss_pred -cCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 741 -RNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 741 -~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
.+...+.+++|+|+|++|++|+.||.|+||++.
T Consensus 659 ~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 659 KRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp --CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 112246789999999999999999999999985
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-31 Score=284.36 Aligned_cols=292 Identities=16% Similarity=0.206 Sum_probs=239.2
Q ss_pred eeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCC
Q 002407 446 LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (927)
Q Consensus 446 l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~ 525 (927)
....++|.+|.+.|++|+| |++++||+|+.||.|+|||+.++.....+ ..+...+..+.|+|++.+++++..++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg 81 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV-----YTGQGFLNSVCYDSEKELLLFGGKDT 81 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE-----EECSSCEEEEEEETTTTEEEEEETTS
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe-----ecCCccEEEEEECCCCCEEEEecCCC
Confidence 3455788999999999999 99999999999999999999887655554 34567899999999999999998888
Q ss_pred ceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe
Q 002407 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (927)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~ 605 (927)
.+..+.... ....+++..+.+|...|.++.|. .+.|++++.|+.|++|| .++.+..+.
T Consensus 82 ~i~~~~~~~-------------------~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d--~~~~~~~~~ 139 (313)
T 3odt_A 82 MINGVPLFA-------------------TSGEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWK--EGSLVYNLQ 139 (313)
T ss_dssp CEEEEETTC-------------------CTTSCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred eEEEEEeee-------------------cCCCCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEc--CCcEEEecc
Confidence 774332211 01235577888999999999993 47899999999999999 566666665
Q ss_pred -cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeee
Q 002407 606 -HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 606 -h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
|...|.+++|.|.++++|++++.|+.|++||...........+...+.+++|+|++. +++++.+|.|++||+.+++..
T Consensus 140 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~ 218 (313)
T 3odt_A 140 AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVL 218 (313)
T ss_dssp CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEE
T ss_pred cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhh
Confidence 999999999998789999999999999999943322222233778999999999998 999999999999999998877
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECC
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASED 764 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D 764 (927)
..+ ..|...|++++|+|++ .|++++.|+.|++||............+...+.+++|+|+++ +++++.|
T Consensus 219 ~~~---------~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d 286 (313)
T 3odt_A 219 RTY---------EGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSD 286 (313)
T ss_dssp EEE---------ECCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETT
T ss_pred hhh---------hcCCceEEEEEEecCC--CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCC
Confidence 664 3788999999999988 489999999999999765544444444567899999999998 5678999
Q ss_pred CcEEEEECCCCCCc
Q 002407 765 SYVYVWKYEAESRP 778 (927)
Q Consensus 765 g~I~IWdl~s~~~~ 778 (927)
|.|+||+++++...
T Consensus 287 g~i~iw~~~~~~~~ 300 (313)
T 3odt_A 287 NLVRIFSQEKSRWA 300 (313)
T ss_dssp SCEEEEESCGGGCC
T ss_pred CcEEEEeCCCCcee
Confidence 99999999876543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=295.82 Aligned_cols=295 Identities=12% Similarity=0.148 Sum_probs=237.4
Q ss_pred eEeecCCCCEEEEEEcCCCCEE-EEEeC---CCcEEEEecCcCcccceeecccccCccccEEEEccCCC---CCeecccc
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYL-ASAGE---DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE---PTSLSPKH 522 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~L-aSgs~---DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd---~~~la~~~ 522 (927)
+.+++|.+.|++|+|+|++..| ++|+. |+.|+||++.+++...... ..+...+.++.|+|+ +.+++++.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE----IEKAKPIKCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE----EEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee----ecccCcEEEEEEcCCCCCCceEEEec
Confidence 4557899999999999999655 55665 9999999999876544332 256678999999998 68999988
Q ss_pred cCCceeeecccccccccccccCcccccceEeecCC-C-ceEEEccCCCCEEEEEe------cCC-cEEEEEeCCCcEEEE
Q 002407 523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-K-PICSFQGHLDDVLDLSW------SKS-QHLLSSSMDKTVRLW 593 (927)
Q Consensus 523 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~-k-~i~~l~gH~~~V~~l~~------spd-~~L~Sgs~DgtV~lW 593 (927)
.++.+. +|++.. + ++..+.+|...|.++.| +++ .+|++++.|++|++|
T Consensus 88 ~dg~i~-----------------------iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vw 144 (357)
T 3i2n_A 88 FGGNLH-----------------------IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVW 144 (357)
T ss_dssp TTSCEE-----------------------EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEE
T ss_pred CCCeEE-----------------------EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEE
Confidence 888773 444432 3 67888999999999965 566 689999999999999
Q ss_pred eCCCCc-EEEEEe-cC----CceEEEE----EccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECC---C
Q 002407 594 HLSSKT-CLKIFS-HS----DYVTCIQ----FNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTP---D 660 (927)
Q Consensus 594 Dl~t~~-~~~~~~-h~----~~V~~v~----fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~sp---d 660 (927)
|+.+++ .+..+. |. ..|.+++ |+| ++++|++++.|+.|++||+++++......+...|.+++|+| +
T Consensus 145 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~ 223 (357)
T 3i2n_A 145 DPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDIS 223 (357)
T ss_dssp CTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSS
T ss_pred eCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCC
Confidence 999887 666664 33 3899998 677 99999999999999999999999888888889999999999 9
Q ss_pred CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--------
Q 002407 661 GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-------- 732 (927)
Q Consensus 661 g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-------- 732 (927)
+.+|++++.||.|++||+++++....+... ....|...|++++|+|++..+|++++.|+.|++||...
T Consensus 224 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 299 (357)
T 3i2n_A 224 MNKLVATSLEGKFHVFDMRTQHPTKGFASV----SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD 299 (357)
T ss_dssp CCEEEEEESTTEEEEEEEEEEETTTEEEEE----EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred CCEEEEECCCCeEEEEeCcCCCcccceeee----ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence 999999999999999999876544332211 12378899999999999876899999999999999532
Q ss_pred -----------ceEEEEeecCCcceEEEEEecCCCEEE-EEECCCcEEEEECCCCC
Q 002407 733 -----------LVHKFKGFRNTNSQISASLTANGRYVV-SASEDSYVYVWKYEAES 776 (927)
Q Consensus 733 -----------~~~~~~~~~~~~~v~sv~fspdg~~La-sgs~Dg~I~IWdl~s~~ 776 (927)
.........+...|.+++|+|++++|+ +++.|+.|+||++.+..
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 122333344577899999999999998 89999999999998754
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-32 Score=298.33 Aligned_cols=296 Identities=13% Similarity=0.190 Sum_probs=238.8
Q ss_pred eecCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCC----CCeeccccc
Q 002407 452 IQAHNGSIWSIKFSLD----GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE----PTSLSPKHL 523 (927)
Q Consensus 452 L~gH~~~I~~vafSpd----G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd----~~~la~~~~ 523 (927)
+.+|.+.|++|+|+|+ ..++++++.++.|+||++.+++.+..+.......+...+.+++|+|+ +.+++++..
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 3589999999999984 44666666677999999998877766654444456678999999998 668888888
Q ss_pred CCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEeCCCCcE
Q 002407 524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK-S-QHLLSSSMDKTVRLWHLSSKTC 600 (927)
Q Consensus 524 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~sp-d-~~L~Sgs~DgtV~lWDl~t~~~ 600 (927)
++.+ .+|++ ..+.+..+.+|...|++++|+| + .+|++++.|++|++||+.+++.
T Consensus 94 dg~i-----------------------~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 150 (366)
T 3k26_A 94 RGII-----------------------RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 150 (366)
T ss_dssp TCEE-----------------------EEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE
T ss_pred CCEE-----------------------EEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE
Confidence 8877 34443 3567788899999999999999 6 7899999999999999999999
Q ss_pred EEEE----ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-----------------------------c
Q 002407 601 LKIF----SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-----------------------------D 647 (927)
Q Consensus 601 ~~~~----~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-----------------------------~ 647 (927)
+..+ .|...|.+++|+| ++++|++++.|+.|++||+.+++.+..+ .
T Consensus 151 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T 3k26_A 151 VAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 229 (366)
T ss_dssp EEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS
T ss_pred EEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccC
Confidence 9888 4999999999999 9999999999999999999886543221 2
Q ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccc-----cccccccCCCCCeEEEEEcCC--CCcEEEEEE
Q 002407 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN-----LQNKKKRSHQRKITGFQFAPG--SSSEVLVTS 720 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~-----~~~~~~~~h~~~Vtsl~fspd--g~~~Llsgs 720 (927)
+...|.+++|+ +++|++++.|+.|++||+.+.......... ........|...|++++|+|+ +. +|++++
T Consensus 230 ~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~~~ 306 (366)
T 3k26_A 230 HRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLALGN 306 (366)
T ss_dssp CSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEEEC
T ss_pred CcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEEEe
Confidence 77889999998 779999999999999999876541110000 001112467888999999998 66 899999
Q ss_pred CCCcEEEEECCc------ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 721 ADSRIRVVDGID------LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 721 ~Dg~I~VwD~~~------~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
.|+.|++||... ....+..+.+...|.+++|+|++++|++++.||.|+|||+.+
T Consensus 307 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 307 QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999999999654 333555555578999999999999999999999999999853
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=304.03 Aligned_cols=282 Identities=15% Similarity=0.156 Sum_probs=230.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccc
Q 002407 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (927)
Q Consensus 457 ~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~ 536 (927)
..+++++|+|+|++|++++.|+.|++|++.+.+....+. .+ ..+....+++++.+++++..++.+.
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~l~~~~~dg~i~-------- 122 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK-----RA-DYTAVDTAKLQMRRFILGTTEGDIK-------- 122 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC-----SC-CEEEEEEECSSSCEEEEEETTSCEE--------
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe-----cC-CceEEEEEecCCCEEEEEECCCCEE--------
Confidence 345579999999999999999999999998876554432 22 4455667899999999998888773
Q ss_pred cccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEE
Q 002407 537 NRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCI 613 (927)
Q Consensus 537 ~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v 613 (927)
+|++. .+.+..+.+|...|++++|+|+ .+|++++.|++|++||+.+++.+..+. |...|.++
T Consensus 123 ---------------iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 187 (420)
T 3vl1_A 123 ---------------VLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDI 187 (420)
T ss_dssp ---------------EECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEE
T ss_pred ---------------EEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEE
Confidence 44443 3444556799999999999998 789999999999999999999888887 99999999
Q ss_pred EEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc----CCCcEEEE---------------------EECCCCCEEEEEE
Q 002407 614 QFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND----LHEMVTAA---------------------CYTPDGQGALVGS 668 (927)
Q Consensus 614 ~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~----~~~~V~sl---------------------a~spdg~~l~tgs 668 (927)
+|+| ++++|++++.|+.|++||+.+++.+..+. +...+.++ +|+|++++|++++
T Consensus 188 ~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (420)
T 3vl1_A 188 AIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH 266 (420)
T ss_dssp EEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE
T ss_pred EEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc
Confidence 9999 99999999999999999999998876554 23344444 4578999999999
Q ss_pred CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc---eEEEEeecCCcc
Q 002407 669 YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL---VHKFKGFRNTNS 745 (927)
Q Consensus 669 ~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~---~~~~~~~~~~~~ 745 (927)
.||.|++||+++++...... ..|...|++++|+|++..+|++++.|+.|++||.... ...+..+ +...
T Consensus 267 ~dg~i~i~d~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~ 337 (420)
T 3vl1_A 267 VSGVITVHNVFSKEQTIQLP--------SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EGTP 337 (420)
T ss_dssp TTSCEEEEETTTCCEEEEEC--------CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TTSC
T ss_pred CCCeEEEEECCCCceeEEcc--------cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CCCC
Confidence 99999999999987666543 3678899999999998778999999999999997542 4555543 4556
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 746 QISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 746 v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
+..+ +.+++++|++++.|+.|+||++.....+
T Consensus 338 v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~ 369 (420)
T 3vl1_A 338 INNV-YFAAGALFVSSGFDTSIKLDIISDPESE 369 (420)
T ss_dssp EEEE-EEETTEEEEEETTTEEEEEEEECCTTCC
T ss_pred ceEE-EeCCCCEEEEecCCccEEEEeccCCCCC
Confidence 6666 4567889999999999999999886544
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-30 Score=284.98 Aligned_cols=288 Identities=17% Similarity=0.255 Sum_probs=230.3
Q ss_pred CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
.....+.+|...|++++|+|+ .+|++++.|+.|++|++.+++....+. |...|.+++|+| ++++|++++.|+.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEE
Confidence 456688999999999999999 789999999999999999999888886 999999999999 99999999999999999
Q ss_pred eCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 636 SIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 636 Dl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
|+.+++.+.. ..+...|.+++|+|++++|++++.|+.|++||+.+++....+ ..|...|.+++|+|++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------~~~~~~v~~~~~~~~~~- 162 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL---------PAHSDPVSAVHFNRDGS- 162 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE---------CCCSSCEEEEEECTTSS-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe---------cCCCCcEEEEEEcCCCC-
Confidence 9999887764 456788999999999999999999999999999998876654 36888999999999887
Q ss_pred EEEEEECCCcEEEEECCcceEEEEe-ecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeee
Q 002407 715 EVLVTSADSRIRVVDGIDLVHKFKG-FRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHF 793 (927)
Q Consensus 715 ~Llsgs~Dg~I~VwD~~~~~~~~~~-~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~ 793 (927)
+|++++.|+.|++||.......... ..+...+..++|+|++++|++++.|+.|+|||+.++......
T Consensus 163 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------ 230 (312)
T 4ery_A 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------------ 230 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE------------
T ss_pred EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE------------
Confidence 8999999999999997654433322 234567889999999999999999999999999764321100
Q ss_pred cCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCc
Q 002407 794 HCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPE 873 (927)
Q Consensus 794 ~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~ 873 (927)
. +. ..... ......+.+++.+|++++ .|+.+++|+.
T Consensus 231 ~-----------~~-----------------~~~~~------------~~~~~~~~~~~~~l~sg~----~dg~i~vwd~ 266 (312)
T 4ery_A 231 T-----------GH-----------------KNEKY------------CIFANFSVTGGKWIVSGS----EDNLVYIWNL 266 (312)
T ss_dssp C-----------SS-----------------CCSSS------------CCCEEEECSSSCEEEECC----TTSCEEEEET
T ss_pred E-----------ec-----------------CCceE------------EEEEEEEeCCCcEEEEEC----CCCEEEEEEC
Confidence 0 00 00000 000011246778888877 7889999987
Q ss_pred hhhcc---ccccCCCceecccCCCCCcccCCCCCEEEEEc--CCCcEEEeec
Q 002407 874 EKLVL---TARNRSPRTSLDISNGISSSISAWGMVIVTAG--LRGEIRAYQN 920 (927)
Q Consensus 874 e~l~~---~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs--~DG~IrvW~~ 920 (927)
..... ..+|...+. +++|+|++.+|++++ .||+|++|+.
T Consensus 267 ~~~~~~~~~~~h~~~v~--------~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 267 QTKEIVQKLQGHTDVVI--------STACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp TTCCEEEEECCCSSCEE--------EEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred CCchhhhhhhccCCcEE--------EEeecCcCCceEEEEccCCccEEEecC
Confidence 64322 334555444 468999999999997 6999999984
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-30 Score=281.64 Aligned_cols=282 Identities=15% Similarity=0.259 Sum_probs=234.6
Q ss_pred CCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccc
Q 002407 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 419 d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
+...++++|+.|++|++|+....+.....+.+.+.+|...|++++|+|+|++|++++.|+.|++|+..........
T Consensus 49 ~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~---- 124 (340)
T 4aow_A 49 QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF---- 124 (340)
T ss_dssp TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeee----
Confidence 4456789999999999999988777667777899999999999999999999999999999999999887655543
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCC--CceEEEccCCCCEEEEEec
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD--KPICSFQGHLDDVLDLSWS 576 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~--k~i~~l~gH~~~V~~l~~s 576 (927)
..+...+....+.+++..++++..++.+.. |+... +....+.+|...|..++|+
T Consensus 125 -~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~-----------------------~d~~~~~~~~~~~~~~~~~v~~~~~~ 180 (340)
T 4aow_A 125 -VGHTKDVLSVAFSSDNRQIVSGSRDKTIKL-----------------------WNTLGVCKYTVQDESHSEWVSCVRFS 180 (340)
T ss_dssp -ECCSSCEEEEEECTTSSCEEEEETTSCEEE-----------------------ECTTSCEEEEECSSSCSSCEEEEEEC
T ss_pred -cCCCCceeEEEEeecCccceeecCCCeEEE-----------------------EEeCCCceEEEEeccccCcccceEEc
Confidence 344456677788899898888888777633 33322 2233456899999999998
Q ss_pred CC---cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcE
Q 002407 577 KS---QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMV 652 (927)
Q Consensus 577 pd---~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V 652 (927)
++ ..+++++.|++|++||+.+++++..+. |...|++++|+| ++++|++|+.|+.|++||+.+.+.+..+.++..+
T Consensus 181 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v 259 (340)
T 4aow_A 181 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDII 259 (340)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECSSCE
T ss_pred cCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCCceE
Confidence 86 468899999999999999999988886 999999999999 9999999999999999999999999888888999
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 002407 653 TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 653 ~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~ 731 (927)
.+++|+|++.+ ++++.|+.|++||++++.....+...........|...|++++|+|++. +|++++.|+.|+|||..
T Consensus 260 ~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 260 NALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ-TLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS-EEEEEETTSCEEEEEEE
T ss_pred EeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEeCC
Confidence 99999998865 5566799999999999887776554433344457889999999999987 89999999999999954
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.9e-30 Score=292.06 Aligned_cols=296 Identities=22% Similarity=0.305 Sum_probs=222.7
Q ss_pred ccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC------------------CceEEEEEccCCCCEE
Q 002407 564 QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS------------------DYVTCIQFNPVDDRYF 623 (927)
Q Consensus 564 ~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~------------------~~V~~v~fsp~dg~~L 623 (927)
.+|...|.+++|+|+ .+|+++ .+++++||++.+++.+..+. |. ..|.+++|+| ++++|
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g-~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l 138 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFL 138 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEE-CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEE
T ss_pred cCCCCEEEEEEECCCCCEEEEE-cCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC-CCCEE
Confidence 369999999999999 556665 58999999999999887765 21 2499999999 99999
Q ss_pred EEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCC
Q 002407 624 ISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (927)
Q Consensus 624 ~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (927)
++|+.|+.|++||+.+++.+.. ..|...|.+++|+|++++|++++.|+.|++||+.+++....+ .+...
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~----------~~~~~ 208 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL----------SIEDG 208 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----------ECSSC
T ss_pred EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE----------EcCCC
Confidence 9999999999999999987764 456789999999999999999999999999999998876553 34567
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEEEEECCcce--EEEE-----eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 703 ITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV--HKFK-----GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 703 Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~--~~~~-----~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
+.+++|+|....+|++++.|+.|++||..... ..+. ...+...|.+++|+|++++|++++.|+.|+|||+.+.
T Consensus 209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999999444489999999999999965432 2221 1345678999999999999999999999999999875
Q ss_pred CCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeE
Q 002407 776 SRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTI 855 (927)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~L 855 (927)
......... . .+.. ...+ .++. ..+..++|+|++.+|
T Consensus 289 ~~~~~~~~~----------~---------~~~~---------~~~~---~~h~------------~~v~~~~~~~~~~~l 325 (393)
T 1erj_A 289 NNKSDSKTP----------N---------SGTC---------EVTY---IGHK------------DFVLSVATTQNDEYI 325 (393)
T ss_dssp -------------------------------CE---------EEEE---ECCS------------SCEEEEEECGGGCEE
T ss_pred CCcccccCC----------C---------CCcc---------eEEE---eccc------------CcEEEEEECCCCCEE
Confidence 432111000 0 0000 0000 0111 112345699999999
Q ss_pred EEeccccccCccccccCchhhc---cccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 856 SSATNSYFFDRISATWPEEKLV---LTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 856 asas~~~~~d~~v~~W~~e~l~---~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
++++ .|+.+.+|+..... ...+|...+..+.+.. ...++|++.+||||+.||+||+|+.
T Consensus 326 ~sgs----~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~--~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 326 LSGS----KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN--GSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp EEEE----TTSEEEEEETTTCCEEEEEECCSSCEEEEEECS--SCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred EEEe----CCCeEEEEECCCCeEEEEECCCCCCEEEEEecC--CcCcCCCCCEEEEECCCCcEEECcc
Confidence 9987 88999999876432 2456777776665443 2457789999999999999999984
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-31 Score=314.81 Aligned_cols=200 Identities=12% Similarity=0.160 Sum_probs=163.9
Q ss_pred EEEccCCCCEEEEEecCC-------cEEEEEeCCCcEEEEeCCCCcE-----------EEEEe-cCCceEEEEEccCCCC
Q 002407 561 CSFQGHLDDVLDLSWSKS-------QHLLSSSMDKTVRLWHLSSKTC-----------LKIFS-HSDYVTCIQFNPVDDR 621 (927)
Q Consensus 561 ~~l~gH~~~V~~l~~spd-------~~L~Sgs~DgtV~lWDl~t~~~-----------~~~~~-h~~~V~~v~fsp~dg~ 621 (927)
..+.+|.+.|.+++|+|+ ++|++++.|++|+|||+..+.. ...+. |...|++++|+| + .
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~ 278 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-T 278 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-S
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-C
Confidence 345678899999999985 5899999999999999987642 12343 889999999998 5 4
Q ss_pred EEEEEECCCcEEEEeCCCCc-E-EEeccCCCcEEEE--EECCCC-CEEEEEECCCeEEEEECCCCeeeeecccccccccc
Q 002407 622 YFISGSLDAKVRIWSIPERQ-V-VDWNDLHEMVTAA--CYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKK 696 (927)
Q Consensus 622 ~L~sgs~Dg~I~IWDl~t~~-~-v~~~~~~~~V~sl--a~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~ 696 (927)
+|++|+.||+|++||+.++. . .....|...|+++ +|+|++ .+|++++.|++|+|||+++++....+.
T Consensus 279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-------- 350 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-------- 350 (524)
T ss_dssp EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE--------
T ss_pred eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc--------
Confidence 89999999999999998763 2 2356678899999 578888 899999999999999998876544322
Q ss_pred cCCC--CCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce--EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 697 RSHQ--RKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV--HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 697 ~~h~--~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~--~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
.|. ..|.+++|+|++. .+++++.|++|++||.+... ..+.+ |...|.+++|+|+|++|++|+.|++|+||++
T Consensus 351 -~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 351 -SRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp -EECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred -cccccCcccceEeCCCcC-eEEEeCCCCcEEEEECcccccceeeec--CCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 232 3578999999887 68999999999999976543 44444 5778999999999999999999999999998
Q ss_pred CC
Q 002407 773 EA 774 (927)
Q Consensus 773 ~s 774 (927)
..
T Consensus 427 ~~ 428 (524)
T 2j04_B 427 AR 428 (524)
T ss_dssp CS
T ss_pred hH
Confidence 54
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-30 Score=293.86 Aligned_cols=308 Identities=13% Similarity=0.146 Sum_probs=246.8
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..++++..++.|++|+..+.+.... +..| ..+....|+|++++||+|+.||.|+|||+.+++....+ ..
T Consensus 69 ~~l~~~~~d~~v~i~d~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~ 137 (420)
T 3vl1_A 69 SHLYKARLDGHDFLFNTIIRDGSKM-----LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID-----QA 137 (420)
T ss_dssp TTEEEEEETTEEEEEECCSEETTTT-----SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET-----TS
T ss_pred CeEEEEEcCCcEEEEEecccceeeE-----EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec-----cc
Confidence 3467778889999999877665433 3455 45556678999999999999999999999877654442 56
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-c
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q 579 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~ 579 (927)
|...+.+++|+|++.+++++..++.+ .+|++ .++.+..+.+|...|++++|+|+ .
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i-----------------------~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 194 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQL-----------------------KIWSVKDGSNPRTLIGHRATVTDIAIIDRGR 194 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEE-----------------------EEEETTTCCCCEEEECCSSCEEEEEEETTTT
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeE-----------------------EEEeCCCCcCceEEcCCCCcEEEEEEcCCCC
Confidence 78899999999999999999888877 34444 34677888999999999999998 7
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceEEEEE---------------------ccCCCCEEEEEECCCcEEE
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFS----HSDYVTCIQF---------------------NPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~----h~~~V~~v~f---------------------sp~dg~~L~sgs~Dg~I~I 634 (927)
+|++++.|++|++||+.+++++..+. +...|.+++| +| ++++|++++.||.|++
T Consensus 195 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 273 (420)
T 3vl1_A 195 NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITV 273 (420)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEE
T ss_pred EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEE
Confidence 89999999999999999999998885 4445555554 67 8889999999999999
Q ss_pred EeCCCCcEEEec--cCCCcEEEEEECCCCC-EEEEEECCCeEEEEECCCCee-eeecccccccccccCCCCCeEEEEEcC
Q 002407 635 WSIPERQVVDWN--DLHEMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENKL-QQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 635 WDl~t~~~v~~~--~~~~~V~sla~spdg~-~l~tgs~Dg~I~IwDl~~~~~-~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
||+.+++.+... .+...|.+++|+|++. +|++|+.||.|++||+++++. ...+. ..+...|+++.+.
T Consensus 274 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~--------~~~~~~v~~~~~~- 344 (420)
T 3vl1_A 274 HNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL--------INEGTPINNVYFA- 344 (420)
T ss_dssp EETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE--------ESTTSCEEEEEEE-
T ss_pred EECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh--------ccCCCCceEEEeC-
Confidence 999998766543 3557899999999999 999999999999999998753 33321 2367788888665
Q ss_pred CCCcEEEEEECCCcEEEEECCcc---------eEEEEeecCCcceEEEEEecCCC---EEEEEECCCcEEEEECCC
Q 002407 711 GSSSEVLVTSADSRIRVVDGIDL---------VHKFKGFRNTNSQISASLTANGR---YVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~VwD~~~~---------~~~~~~~~~~~~v~sv~fspdg~---~Lasgs~Dg~I~IWdl~s 774 (927)
++. +|++++.|+.|++|+.... ........+...+..++|+|+++ .|++++.+|.+.+|++++
T Consensus 345 ~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 345 AGA-LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TTE-EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CCC-EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 444 8999999999999995431 11112234567789999999999 788888999999999875
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.98 E-value=4.8e-30 Score=286.12 Aligned_cols=285 Identities=14% Similarity=0.135 Sum_probs=232.7
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc--ccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE--RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~--~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
+..|.++|++++|+|++++||+++.|+.|+||++.+++ ....+ .++...+..+.|+|++.+++++..++.+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~~~~~dg~i~- 77 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-----KEHNGQVTGVDWAPDSNRIVTCGTDRNAY- 77 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-----ECCSSCEEEEEEETTTTEEEEEETTSCEE-
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-----cCCCCcccEEEEeCCCCEEEEEcCCCeEE-
Confidence 35699999999999999999999999999999998876 44443 36778899999999999999998888774
Q ss_pred ecccccccccccccCcccccceEeecCCC---ceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcE---EE
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDK---PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC---LK 602 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k---~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~---~~ 602 (927)
+|++... ....+..|...|.+++|+|+ .+|++++.|+.|++||+..+.. ..
T Consensus 78 ----------------------vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 135 (372)
T 1k8k_C 78 ----------------------VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135 (372)
T ss_dssp ----------------------EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE
T ss_pred ----------------------EEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee
Confidence 3333222 23345779999999999998 7899999999999999998763 33
Q ss_pred EEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCC------------------CCcEEEec-cCCCcEEEEEECCCC
Q 002407 603 IFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP------------------ERQVVDWN-DLHEMVTAACYTPDG 661 (927)
Q Consensus 603 ~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~------------------t~~~v~~~-~~~~~V~sla~spdg 661 (927)
.+. |...|.+++|+| ++++|++++.|+.|++||+. .++.+..+ .+...|.+++|+|++
T Consensus 136 ~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 214 (372)
T 1k8k_C 136 HIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG 214 (372)
T ss_dssp EECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS
T ss_pred eeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC
Confidence 332 789999999999 99999999999999999953 55666544 667889999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEE---
Q 002407 662 QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHK--- 736 (927)
Q Consensus 662 ~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~--- 736 (927)
++|++++.|+.|++||+.+++....+ ..|...|++++|+|++. +|+ ++.|+.|++|+... ..-.
T Consensus 215 ~~l~~~~~d~~i~i~d~~~~~~~~~~---------~~~~~~v~~~~~~~~~~-~l~-~~~d~~i~i~~~~~~~~~~~~~~ 283 (372)
T 1k8k_C 215 SRVAWVSHDSTVCLADADKKMAVATL---------ASETLPLLAVTFITESS-LVA-AGHDCFPVLFTYDSAAGKLSFGG 283 (372)
T ss_dssp SEEEEEETTTEEEEEEGGGTTEEEEE---------ECSSCCEEEEEEEETTE-EEE-EETTSSCEEEEEETTTTEEEECC
T ss_pred CEEEEEeCCCEEEEEECCCCceeEEE---------ccCCCCeEEEEEecCCC-EEE-EEeCCeEEEEEccCcCceEEEee
Confidence 99999999999999999988877664 36778999999999875 444 45999999999644 1100
Q ss_pred -----------------------------------EEe-ecCCcceEEEEEe-cCC---CEEEEEECCCcEEEEECCCCC
Q 002407 737 -----------------------------------FKG-FRNTNSQISASLT-ANG---RYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 737 -----------------------------------~~~-~~~~~~v~sv~fs-pdg---~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
... ..|...|.+++|. ++| .+|++++.||.|+||++.+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 284 RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 111 2567789999866 676 999999999999999997754
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-30 Score=279.54 Aligned_cols=256 Identities=18% Similarity=0.247 Sum_probs=211.4
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
+.+.+|.+.|++|+|+|++++||+|+.||.|+||++.++....
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------------------------------- 47 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW------------------------------------- 47 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE-------------------------------------
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc-------------------------------------
Confidence 4568999999999999999999999999999999987543211
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC--C-cEEEEEeCCCcEEEEeCCCC--------
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK--S-QHLLSSSMDKTVRLWHLSSK-------- 598 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp--d-~~L~Sgs~DgtV~lWDl~t~-------- 598 (927)
+.+..+.+|...|++++|+| + .+|++++.|++|++||+.++
T Consensus 48 ----------------------------~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 99 (351)
T 3f3f_A 48 ----------------------------ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRR 99 (351)
T ss_dssp ----------------------------EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCS
T ss_pred ----------------------------eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccC
Confidence 22446678999999999998 3 78999999999999999887
Q ss_pred -cEEEEEe-cCCceEEEEEccCC--CCEEEEEECCCcEEEEeCCCCcEEEe--------------ccCCCcEEEEEECCC
Q 002407 599 -TCLKIFS-HSDYVTCIQFNPVD--DRYFISGSLDAKVRIWSIPERQVVDW--------------NDLHEMVTAACYTPD 660 (927)
Q Consensus 599 -~~~~~~~-h~~~V~~v~fsp~d--g~~L~sgs~Dg~I~IWDl~t~~~v~~--------------~~~~~~V~sla~spd 660 (927)
+++..+. |...|.+++|+| + +++|++++.|+.|++||+.+++.+.. ..+...+.+++|+|+
T Consensus 100 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 178 (351)
T 3f3f_A 100 WNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPS 178 (351)
T ss_dssp EEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCC
T ss_pred cceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccC
Confidence 4455554 999999999999 7 99999999999999999988754321 135578999999997
Q ss_pred ---CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC---cEEEEEECCCcEEEEECCcc-
Q 002407 661 ---GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS---SEVLVTSADSRIRVVDGIDL- 733 (927)
Q Consensus 661 ---g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~---~~Llsgs~Dg~I~VwD~~~~- 733 (927)
+.+|++++.++.+.+|+...+....... ...|...|++++|+|++. .+|++++.|+.|++||....
T Consensus 179 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 251 (351)
T 3f3f_A 179 RFSPEKLAVSALEQAIIYQRGKDGKLHVAAK-------LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL 251 (351)
T ss_dssp SSSCCEEEEEETTEEEEEEECTTSCEEEEEE-------CCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC
T ss_pred CCCCcEEEEecCCCcEEEEccCCCceeeeee-------cCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCc
Confidence 9999999999999888888776533322 247889999999999973 58999999999999995431
Q ss_pred ---------------------------------------------eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 734 ---------------------------------------------VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 734 ---------------------------------------------~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
........+...|.+++|+|++++|++++.||.|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~ 331 (351)
T 3f3f_A 252 SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVR 331 (351)
T ss_dssp ---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEE
T ss_pred CccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEE
Confidence 22223334677899999999999999999999999
Q ss_pred EEECCCCCCc
Q 002407 769 VWKYEAESRP 778 (927)
Q Consensus 769 IWdl~s~~~~ 778 (927)
||++.++...
T Consensus 332 iw~~~~~~~~ 341 (351)
T 3f3f_A 332 LWKATYSNEF 341 (351)
T ss_dssp EEEECTTSCE
T ss_pred EEecCcCcch
Confidence 9999986543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=276.95 Aligned_cols=287 Identities=12% Similarity=0.175 Sum_probs=233.5
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
.|.+.|.+++|+|||++|+++..++.+.+|.......... ...|...+.++.++|++.+++++. ++.+..+...
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~ 80 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQIN-----TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDIS 80 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEE-----EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETT
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccce-----eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECC
Confidence 3677899999999999999998888777776544332222 235778899999999999999987 7776443322
Q ss_pred ccccccccccCcccccceEeecCCCceEEEc--cCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc--EEEEEe-cC
Q 002407 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQ--GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT--CLKIFS-HS 607 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~--gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~--~~~~~~-h~ 607 (927)
... ....+..+. +|...|.+++|+|+ .+|++++.|+.|++||+.+++ ....+. |.
T Consensus 81 ~~~-------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 141 (337)
T 1gxr_A 81 HPG-------------------NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA 141 (337)
T ss_dssp STT-------------------CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS
T ss_pred CCC-------------------ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCC
Confidence 100 012233333 79999999999999 789999999999999999887 444444 88
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
..|.+++|+| ++++|++++.|+.|++||+.+++.+..+ .+...+.+++|+|++++|++++.|+.|++||+.+++....
T Consensus 142 ~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 220 (337)
T 1gxr_A 142 PACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220 (337)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee
Confidence 8999999999 9999999999999999999998877654 4678999999999999999999999999999999887665
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCc
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
. .+...+.+++|+|++. +|++++.++.|++||...... .....+...+.+++|+|++++|++++.||.
T Consensus 221 ~----------~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 288 (337)
T 1gxr_A 221 H----------DFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNL 288 (337)
T ss_dssp E----------ECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred e----------cCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCc
Confidence 3 4567899999999987 899999999999999765433 344556788999999999999999999999
Q ss_pred EEEEECCCCCCc
Q 002407 767 VYVWKYEAESRP 778 (927)
Q Consensus 767 I~IWdl~s~~~~ 778 (927)
|++|++.++...
T Consensus 289 i~~~~~~~~~~~ 300 (337)
T 1gxr_A 289 LNAWRTPYGASI 300 (337)
T ss_dssp EEEEETTTCCEE
T ss_pred EEEEECCCCeEE
Confidence 999999887644
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-31 Score=291.28 Aligned_cols=246 Identities=19% Similarity=0.278 Sum_probs=197.0
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
+.+.+|.+.|++|+|+|+|++||||+.|++|+|||+.++..
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~--------------------------------------- 47 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ--------------------------------------- 47 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------------------------------
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------------------------------
Confidence 34579999999999999999999999999999999865321
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC---CcEEEEEeCCCcEEEEeCCCCc--EEEEE
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK---SQHLLSSSMDKTVRLWHLSSKT--CLKIF 604 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp---d~~L~Sgs~DgtV~lWDl~t~~--~~~~~ 604 (927)
..+..+.+|.+.|++++|++ ..+|++++.|++|+|||+.+++ .+..+
T Consensus 48 ----------------------------~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~ 99 (316)
T 3bg1_A 48 ----------------------------ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH 99 (316)
T ss_dssp ----------------------------EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE
T ss_pred ----------------------------EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc
Confidence 12345778999999999986 2689999999999999999874 45555
Q ss_pred e-cCCceEEEEEccCC--CCEEEEEECCCcEEEEeCCCCcEE---E-eccCCCcEEEEEECCC-----------------
Q 002407 605 S-HSDYVTCIQFNPVD--DRYFISGSLDAKVRIWSIPERQVV---D-WNDLHEMVTAACYTPD----------------- 660 (927)
Q Consensus 605 ~-h~~~V~~v~fsp~d--g~~L~sgs~Dg~I~IWDl~t~~~v---~-~~~~~~~V~sla~spd----------------- 660 (927)
. |...|.+++|+| + +.+|++|+.|+.|++||+..+... . ...|...+.+++|+|+
T Consensus 100 ~~h~~~V~~v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (316)
T 3bg1_A 100 AGHDSSVNSVCWAP-HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNY 178 (316)
T ss_dssp CCCSSCCCEEEECC-TTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCC
T ss_pred cCCCCceEEEEECC-CCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccc
Confidence 4 999999999999 6 789999999999999999876322 2 3345678999999997
Q ss_pred CCEEEEEECCCeEEEEECCCCe---eeeecccccccccccCCCCCeEEEEEcCCC---CcEEEEEECCCcEEEEECCcc-
Q 002407 661 GQGALVGSYKGSCHLYNTSENK---LQQKSPINLQNKKKRSHQRKITGFQFAPGS---SSEVLVTSADSRIRVVDGIDL- 733 (927)
Q Consensus 661 g~~l~tgs~Dg~I~IwDl~~~~---~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg---~~~Llsgs~Dg~I~VwD~~~~- 733 (927)
+++|++|+.|+.|++||+.... .... ...|...|++++|+|++ ..+|++++.|++|+|||....
T Consensus 179 ~~~l~sgs~D~~v~lWd~~~~~~~~~~~~---------l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~ 249 (316)
T 3bg1_A 179 IKRFASGGCDNLIKLWKEEEDGQWKEEQK---------LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDAS 249 (316)
T ss_dssp CCBEECCBTTSBCCEEEECTTSCEEEEEC---------CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTT
T ss_pred cceEEEecCCCeEEEEEeCCCCccceeee---------cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcc
Confidence 4789999999999999997542 2222 24799999999999986 248999999999999996541
Q ss_pred -----eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 734 -----VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 734 -----~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
...+. .+...|.+++|+|++++||+++.|+.|+||+...
T Consensus 250 ~~~~~~~~~~--~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 250 SNTWSPKLLH--KFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CCCCBCCEEE--ECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred ccchhhhhhh--cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 12233 3467899999999999999999999999999864
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-31 Score=303.28 Aligned_cols=302 Identities=15% Similarity=0.189 Sum_probs=216.7
Q ss_pred eEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEE---ecCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 560 ICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIF---SHSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 560 i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~---~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
.....+|...|++|+|+|. .+|++|+.||+|+|||+.+++....+ .|...|++|+|+|.++++|++++.|++|++
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 3456689999999999995 68999999999999999887654443 399999999999977899999999999999
Q ss_pred EeCCCCcEEEeccCC---CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 635 WSIPERQVVDWNDLH---EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 635 WDl~t~~~v~~~~~~---~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
||+.++.+.....++ ..+.+++|+|++++|++|+.||.|++||++...+ .. ...|...|++++|+|+
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~-~~---------~~~h~~~v~~v~~~p~ 261 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL-WN---------LRMHKKKVTHVALNPC 261 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC-CC---------SBCCSSCEEEEEECTT
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee-EE---------EecccceEEeeeecCC
Confidence 999887655444333 4678999999999999999999999999975432 22 2478999999999999
Q ss_pred CCcEEEEEECCCcEEEEECCcce---EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceee
Q 002407 712 SSSEVLVTSADSRIRVVDGIDLV---HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTH 788 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD~~~~~---~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~ 788 (927)
+..+|++++.|+.|+|||..... .......|...|.+++|+|+|++|++++.||.|+|||+.+...+.....+....
T Consensus 262 ~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 262 CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc
Confidence 88889999999999999965432 112223467789999999999999999999999999998865443221110000
Q ss_pred eeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccc
Q 002407 789 SYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRIS 868 (927)
Q Consensus 789 ~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v 868 (927)
... ...+.....+. .....+.+++++..++..+ ..++.+
T Consensus 342 ------~~~--------------------~~~~~~~~~~~------------~~~~~~~~~~d~~~~~~~~---~~~~~i 380 (435)
T 4e54_B 342 ------FQH--------------------LTPIKAAWHPR------------YNLIVVGRYPDPNFKSCTP---YELRTI 380 (435)
T ss_dssp ------CSS--------------------SCCCBCEECSS------------SSCEEEECCCCTTSCCSST---TCCCCE
T ss_pred ------ccc--------------------ceeEEEEEcCC------------CCEEEEEEcCCCCeEEEEe---cCCCEE
Confidence 000 00000000000 0011123455655555433 234678
Q ss_pred cccCchhhcc----ccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 869 ATWPEEKLVL----TARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 869 ~~W~~e~l~~----~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
.+|+...... ...|...+.++ .+|||+|++||+|+ |++|+||+.
T Consensus 381 ~iwd~~~g~~~~~l~~~~~~~v~s~-------~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 381 DVFDGNSGKMMCQLYDPESSGISSL-------NEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp EEECSSSCCEEEEECCSSCCCCCCE-------EEECTTSSCEEEEC-SSEEEECCC
T ss_pred EEEECCCCcEEEEEeCCCCCcEEEE-------EEECCCCCEEEEEc-CCcEEEEEC
Confidence 8998764322 12333333322 47999999999987 889999984
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-30 Score=283.29 Aligned_cols=276 Identities=20% Similarity=0.244 Sum_probs=209.9
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEe-ec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCccc---ceee
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEI-QA-HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERK---GELL 495 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L-~g-H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~---~~l~ 495 (927)
..++++|..+++|++|+...++.. ....+ .+ |.+.|++|+|+|++++||+|+.|++|+||++...... ...
T Consensus 24 ~~~las~~~D~~i~lw~~~~~~~~---~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~- 99 (330)
T 2hes_X 24 QGILATGSTDRKIKLVSVKYDDFT---LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDL- 99 (330)
T ss_dssp TTEEEEEESSSCEEEEECSSSCCE---EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEE-
T ss_pred CCEEEEEcCCCEEEEEEecCCCeE---EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcccccee-
Confidence 348899999999999998765432 22334 34 9999999999999999999999999999998643210 011
Q ss_pred cccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecC-----CCceEEEccCCCCE
Q 002407 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-----DKPICSFQGHLDDV 570 (927)
Q Consensus 496 ~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-----~k~i~~l~gH~~~V 570 (927)
.....+|...|..++|+|++.+|++++.++.+.. |++. .+.+..+.+|...|
T Consensus 100 ~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~i-----------------------wd~~~~~~~~~~~~~~~~h~~~v 156 (330)
T 2hes_X 100 LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWI-----------------------WETDESGEEYECISVLQEHSQDV 156 (330)
T ss_dssp EEEEC----CEEEEEECTTSCEEEEEETTSCEEE-----------------------EECCTTCCCCEEEEEECCCSSCE
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEE-----------------------EeccCCCCCeEEEEEeccCCCce
Confidence 1123577889999999999999999999988843 4331 13567789999999
Q ss_pred EEEEecCC-cEEEEEeCCCcEEEEeCCCC--cEEEEEe-cCCceEEEEEccCC--CCEEEEEECCCcEEEEeCCCC----
Q 002407 571 LDLSWSKS-QHLLSSSMDKTVRLWHLSSK--TCLKIFS-HSDYVTCIQFNPVD--DRYFISGSLDAKVRIWSIPER---- 640 (927)
Q Consensus 571 ~~l~~spd-~~L~Sgs~DgtV~lWDl~t~--~~~~~~~-h~~~V~~v~fsp~d--g~~L~sgs~Dg~I~IWDl~t~---- 640 (927)
.+++|+|+ .+|++++.|++|++||+.++ +++..+. |...|.+++|+| + +.+|++++.|++|++||+..+
T Consensus 157 ~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~D~~v~iw~~~~~~~~~ 235 (330)
T 2hes_X 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDD 235 (330)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-SSSSCEEEEEETTSCEEEEEEEEECTTS
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC-CCCeeEEEEEeCCCeEEEEEecCCCccc
Confidence 99999998 78999999999999998876 5666665 999999999999 6 678999999999999998654
Q ss_pred ----cEEEec-c-CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCC-CeEEEEEcCC-C
Q 002407 641 ----QVVDWN-D-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQR-KITGFQFAPG-S 712 (927)
Q Consensus 641 ----~~v~~~-~-~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~-~Vtsl~fspd-g 712 (927)
.+...+ . |...|.+++|++++ +|++++.||.|+|||..++....... ....|.. .|++++|+|. +
T Consensus 236 ~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~------~~~~h~~~~v~~v~~~~~~~ 308 (330)
T 2hes_X 236 QQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAK------RALCHGVYEINVVKWLELNG 308 (330)
T ss_dssp CEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEE------ESCTTTTSCEEEEEEC----
T ss_pred cceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEec------cccccccceEEEEEEecCCC
Confidence 233333 2 67899999999765 89999999999999998764221111 0135666 8999999993 2
Q ss_pred CcEEEEEECCCcEEEEECC
Q 002407 713 SSEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 713 ~~~Llsgs~Dg~I~VwD~~ 731 (927)
..+|++++.|+.|+|||..
T Consensus 309 ~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 309 KTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp -CCEEEEETTSEEEEEEC-
T ss_pred ceEEEEecCCCcEEEEEec
Confidence 3379999999999999964
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-30 Score=286.74 Aligned_cols=314 Identities=18% Similarity=0.237 Sum_probs=239.0
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeec--------ccccCc
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLE--------KQEDGH 502 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~--------~~~~~~ 502 (927)
.+++|+....+.. +.+.+|.+.|++|+|+| ++++||+|+.||.|+||++.++.....+.. ....++
T Consensus 24 ~~~v~~~~~~~~~-----~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
T 4a11_B 24 TRRVLGLELNKDR-----DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH 98 (408)
T ss_dssp HHHHHTEEECTTE-----EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred cceeeccccCcce-----eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence 3455655444332 44578999999999999 999999999999999999998876655431 111357
Q ss_pred cccEEEEccCC-CCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---
Q 002407 503 LNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--- 578 (927)
Q Consensus 503 ~~~v~~v~~sp-d~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--- 578 (927)
...+..+.|+| ++.++++++.++.+ .+|++..........+...+.++.|++.
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i-----------------------~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTL-----------------------KVWDTNTLQTADVFNFEETVYSHHMSPVSTK 155 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEE-----------------------EEEETTTTEEEEEEECSSCEEEEEECSSCSS
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeE-----------------------EEeeCCCCccceeccCCCceeeeEeecCCCC
Confidence 88999999999 77788888888877 4555544433334448889999999985
Q ss_pred -cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCC-EEEEEECCCcEEEEeCCCCc-EEEe---------
Q 002407 579 -QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQ-VVDW--------- 645 (927)
Q Consensus 579 -~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~-~L~sgs~Dg~I~IWDl~t~~-~v~~--------- 645 (927)
.+|++++.|+.|++||+.+++.+..+. |...|.+++|+| ++. +|++++.||.|++||++++. .+..
T Consensus 156 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 234 (408)
T 4a11_B 156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234 (408)
T ss_dssp CCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred CcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence 379999999999999999999888887 999999999999 666 69999999999999998764 2221
Q ss_pred -------ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEE
Q 002407 646 -------NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (927)
Q Consensus 646 -------~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Lls 718 (927)
..+...|.+++|+|++++|++++.||.|++||+.+++.......... ......+ .+.+.......+++
T Consensus 235 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~ 309 (408)
T 4a11_B 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC----NNSKKGL-KFTVSCGCSSEFVF 309 (408)
T ss_dssp CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC----CCCSSCC-CCEECCSSSSCEEE
T ss_pred eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccc----ccccccc-eeEEecCCCceEEE
Confidence 34667899999999999999999999999999998876543321110 0111111 22233333336888
Q ss_pred EECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 719 TSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 719 gs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
++.++.|++||............+...|.+++|+|++++|++++.||.|+||++.+.+...
T Consensus 310 ~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 310 VPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp EEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred EecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 8899999999976655555555567889999999999999999999999999999876543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-29 Score=286.47 Aligned_cols=284 Identities=17% Similarity=0.291 Sum_probs=237.9
Q ss_pred eeeEeecCCCCE-EEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 448 KCQEIQAHNGSI-WSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 448 ~~q~L~gH~~~I-~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
....|.+|.+.| .++.| ++++|++|+.||+|+|||+.+++....+ .+|...|.++.+++++ .+++++.++.
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~-----~~h~~~V~~l~~~~~~-~l~s~s~dg~ 184 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-----SGHDGGVWALKYAHGG-ILVSGSTDRT 184 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEECSTT-EEEEEETTSC
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEE-----eCCCcCEEEEEEcCCC-EEEEEeCCCC
Confidence 345778999885 66666 5679999999999999999998877665 4788899999999988 7778878887
Q ss_pred eeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecC--C-cEEEEEeCCCcEEEEeCCCCcE--
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK--S-QHLLSSSMDKTVRLWHLSSKTC-- 600 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~sp--d-~~L~Sgs~DgtV~lWDl~t~~~-- 600 (927)
+ .+|++ +++.+..+.+|...|.+++|++ + .+|++++.|++|++||+.++..
T Consensus 185 i-----------------------~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 185 V-----------------------RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp E-----------------------EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred E-----------------------EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 7 44444 3467788899999999999984 4 6799999999999999987753
Q ss_pred ---------------------EEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEE
Q 002407 601 ---------------------LKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACY 657 (927)
Q Consensus 601 ---------------------~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~ 657 (927)
+..+. |...|.++ ++ ++++|++++.|+.|++||+.+++.+..+ .+...|.+++|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred cccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence 22333 78888887 45 7889999999999999999999877644 56789999999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEE
Q 002407 658 TPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF 737 (927)
Q Consensus 658 spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~ 737 (927)
+|++++|++|+.||.|++||+.+++....+ ..|...|.+++|++ .+|++++.|+.|++||.......+
T Consensus 319 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~---------~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~ 386 (464)
T 3v7d_B 319 DHERKRCISASMDTTIRIWDLENGELMYTL---------QGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKF 386 (464)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTTEEEEEE---------CCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEE
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEE---------eCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceee
Confidence 999999999999999999999999887765 47889999999985 389999999999999987766666
Q ss_pred EeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 738 KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 738 ~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
..+ +...+..++|++++++|++++ ||.|+|||+.+++...
T Consensus 387 ~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 387 SYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp EEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred eec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 554 455677789999999999998 8999999999987654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=284.83 Aligned_cols=300 Identities=13% Similarity=0.120 Sum_probs=225.7
Q ss_pred CCceEEEccCCCCEEEEEecCCc--EEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceEEEEEccCCCCEEEEEECCCc
Q 002407 557 DKPICSFQGHLDDVLDLSWSKSQ--HLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAK 631 (927)
Q Consensus 557 ~k~i~~l~gH~~~V~~l~~spd~--~L~Sgs~DgtV~lWDl~t~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~ 631 (927)
.+....+.+|...|++++|+|++ +|++++.|++|+|||+.+++....+. |...|.+++|+|.++++|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 35567889999999999999984 89999999999999999988887765 99999999999956789999999999
Q ss_pred EEEEeCCCCcEEEeccCC---CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE
Q 002407 632 VRIWSIPERQVVDWNDLH---EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 632 I~IWDl~t~~~v~~~~~~---~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
|++||+.+........+. ..|.+++|+|++++|++++.|+.|++||+. ++....+ ..|...|++++|
T Consensus 143 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~---------~~h~~~v~~~~~ 212 (383)
T 3ei3_B 143 TTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKE---------KLHKAKVTHAEF 212 (383)
T ss_dssp EEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEE---------ECSSSCEEEEEE
T ss_pred EEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEe---------ccCCCcEEEEEE
Confidence 999999976655554443 679999999999999999999999999995 4444332 478899999999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCc----ceEEEEeecCCcceEEEEEec-CCCEEEEEECCCcEEEEECCCCCCcccccc
Q 002407 709 APGSSSEVLVTSADSRIRVVDGID----LVHKFKGFRNTNSQISASLTA-NGRYVVSASEDSYVYVWKYEAESRPSRSKS 783 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~VwD~~~----~~~~~~~~~~~~~v~sv~fsp-dg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~ 783 (927)
+|++..+|++++.|+.|++||... ... .....+...+.+++|+| ++++|++++.|+.|+|||+.+...+.....
T Consensus 213 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 291 (383)
T 3ei3_B 213 NPRCDWLMATSSVDATVKLWDLRNIKDKNSY-IAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIII 291 (383)
T ss_dssp CSSCTTEEEEEETTSEEEEEEGGGCCSTTCE-EEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEE
T ss_pred CCCCCCEEEEEeCCCEEEEEeCCCCCcccce-EEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccc
Confidence 999877899999999999999654 212 12224678899999999 999999999999999999988765433211
Q ss_pred cceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccc
Q 002407 784 ITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYF 863 (927)
Q Consensus 784 ~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~ 863 (927)
...... -+...+. .. | .+. .....++|+|++.+ +++
T Consensus 292 ~~~~~~---~~~~~~~--~~-----------------~----~p~------------~~~~~~~~s~dg~~--s~s---- 327 (383)
T 3ei3_B 292 HPHRQF---QHLTPIK--AT-----------------W----HPM------------YDLIVAGRYPDDQL--LLN---- 327 (383)
T ss_dssp CCBCCC---TTSCCCC--CE-----------------E----CSS------------SSEEEEECBCCTTT--CTT----
T ss_pred cccccc---ccccceE--Ee-----------------c----cCC------------CCceEEEecCCccc--ccC----
Confidence 100000 0000000 00 0 000 11122458899888 544
Q ss_pred cCccccccCchhhccc---cc--cCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 864 FDRISATWPEEKLVLT---AR--NRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 864 ~d~~v~~W~~e~l~~~---~~--~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
.|+.+.+|+....... .. +...+. .++|+|+|++|++|+ ||.|++|+.
T Consensus 328 ~d~~i~iwd~~~~~~~~~l~~~~~~~~~~--------~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 328 DKRTIDIYDANSGGLVHQLRDPNAAGIIS--------LNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp CCCCEEEEETTTCCEEEEECBTTBCSCCC--------EEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred CCCeEEEEecCCCceeeeecCCCCCceEE--------EEEEecCccEEEEec-CCcEEEEec
Confidence 7899999997643221 11 111111 358999999999998 999999984
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=298.46 Aligned_cols=305 Identities=14% Similarity=0.108 Sum_probs=231.7
Q ss_pred eEe-ecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCc---CcccceeecccccCccccEEEEccCCCCCeecccccC
Q 002407 450 QEI-QAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVE---SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 450 q~L-~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~---~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
+.+ .+|.+.|++|+|+| ++++||+|+.||+|+|||+.+ +....... ...+...|.+++|+|++.+++++..+
T Consensus 56 ~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 56 ATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL---TYDCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE---EEECSSCEEEEEECTTSSEEEEEETT
T ss_pred eeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee---eccCCCCEEEEEEeCCCCEEEEEeCC
Confidence 455 88999999999999 999999999999999999987 33111111 12467889999999999999999999
Q ss_pred CceeeecccccccccccccCcccccceEeecCCCceEEEc--c--CCCCEEEEE--ecCC-cEEEEEeCCCcEEEEeCCC
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ--G--HLDDVLDLS--WSKS-QHLLSSSMDKTVRLWHLSS 597 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~--g--H~~~V~~l~--~spd-~~L~Sgs~DgtV~lWDl~t 597 (927)
+.+..+......... .+.......+..+. . +...+.++. ++++ .+|++++.|++|++||+.+
T Consensus 133 g~i~vwd~~~~~~~~-----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 201 (437)
T 3gre_A 133 GQIIVLKVNHYQQES-----------EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT 201 (437)
T ss_dssp SEEEEEEEEEEEETT-----------EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred CEEEEEEeccccCCc-----------eeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 888655432100000 00000011222222 2 567788887 4466 7899999999999999999
Q ss_pred CcEEEEEe---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec--cCCCcEEEEEEC----CCCCEEEEEE
Q 002407 598 KTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--DLHEMVTAACYT----PDGQGALVGS 668 (927)
Q Consensus 598 ~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~--~~~~~V~sla~s----pdg~~l~tgs 668 (927)
++++..+. |...|++++|+| ++++|++|+.||.|++||+++++++..+ .+...|.+++|+ |++.+|++|+
T Consensus 202 ~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~ 280 (437)
T 3gre_A 202 LERLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS 280 (437)
T ss_dssp CCEEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES
T ss_pred CeeeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEc
Confidence 99998886 789999999999 9999999999999999999999887754 667789999665 4688999999
Q ss_pred CCCeEEEEECCCCeeeeeccccc--------ccc-------ccc--CCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 002407 669 YKGSCHLYNTSENKLQQKSPINL--------QNK-------KKR--SHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 669 ~Dg~I~IwDl~~~~~~~~~~i~~--------~~~-------~~~--~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~ 731 (927)
.||.|++||+.+++....+.... ... ... .|...|++++|+ ++ .+|++++.|+.|++||..
T Consensus 281 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 281 SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMFSLN 358 (437)
T ss_dssp TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEEETT
T ss_pred CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEEECC
Confidence 99999999999988766543110 000 011 277789999999 44 489999999999999954
Q ss_pred c--ceEEEEee-----------------------------------cCCcceEEEEEecC--CCEEEEEECCCcEEEEE
Q 002407 732 D--LVHKFKGF-----------------------------------RNTNSQISASLTAN--GRYVVSASEDSYVYVWK 771 (927)
Q Consensus 732 ~--~~~~~~~~-----------------------------------~~~~~v~sv~fspd--g~~Lasgs~Dg~I~IWd 771 (927)
. ....+..+ .|...|.+++|+++ +.+|++|+.||.|+||+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 359 ELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred CcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 3 33333332 16778999999998 88999999999999995
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=278.95 Aligned_cols=296 Identities=16% Similarity=0.148 Sum_probs=228.2
Q ss_pred ceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEe
Q 002407 559 PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWS 636 (927)
Q Consensus 559 ~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWD 636 (927)
....+.+|...|++++|+|+ .+|++++.|+.|++||+.+++.+..+. |...|.+++|+| ++++|++++.|+.|++||
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEE
Confidence 34568899999999999999 789999999999999999999999887 999999999999 999999999999999999
Q ss_pred CCCCcEEEeccCCCcEEEEEECCCCCEEEEEECC-----CeEEEEECCCCeeeeeccccc--ccccccCCCC--CeEEEE
Q 002407 637 IPERQVVDWNDLHEMVTAACYTPDGQGALVGSYK-----GSCHLYNTSENKLQQKSPINL--QNKKKRSHQR--KITGFQ 707 (927)
Q Consensus 637 l~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~D-----g~I~IwDl~~~~~~~~~~i~~--~~~~~~~h~~--~Vtsl~ 707 (927)
+.+++.+....+...+.+++|+|++++|++++.+ +.|++||+............. .......+.. .+.+++
T Consensus 103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (369)
T 3zwl_B 103 VSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182 (369)
T ss_dssp TTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred CCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence 9999998888888999999999999999999999 999999998764322211100 0111123444 899999
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCc-ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccce
Q 002407 708 FAPGSSSEVLVTSADSRIRVVDGID-LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITV 786 (927)
Q Consensus 708 fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~ 786 (927)
|+|++. +|++++.|+.|++||... .........+...+.+++|+|++++|++++.|+.|++||+.+........
T Consensus 183 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---- 257 (369)
T 3zwl_B 183 WSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---- 257 (369)
T ss_dssp ECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----
T ss_pred EcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----
Confidence 999887 899999999999999765 44444444467789999999999999999999999999998753221110
Q ss_pred eeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccc---
Q 002407 787 THSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYF--- 863 (927)
Q Consensus 787 ~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~--- 863 (927)
+. .....++|+|++.++++++....
T Consensus 258 -------~~---------------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (369)
T 3zwl_B 258 -------TD---------------------------------------------CPLNTAVITPLKEFIILGGGQEAKDV 285 (369)
T ss_dssp -------CS---------------------------------------------SCEEEEEECSSSSEEEEEECCC----
T ss_pred -------CC---------------------------------------------CCceeEEecCCCceEEEeecCCCceE
Confidence 00 00112346777777777652211
Q ss_pred -------cCccccccCchhhcc---ccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 864 -------FDRISATWPEEKLVL---TARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 864 -------~d~~v~~W~~e~l~~---~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
....+.+|+...... ...|..++. +++|+|+|++|+||+.||.|++|+.
T Consensus 286 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~--------~~~~s~~~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 286 TTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLN--------TVAISPQGTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp ---------CEEEEEETTTCCEEEEEECCSSCEE--------EEEECTTSSEEEEEETTSEEEEEEE
T ss_pred EEEecCCCcceeEEEecCCCcchhheecccCcEE--------EEEECCCCCEEEEEcCCCeEEEEEC
Confidence 011567777643221 234444444 4689999999999999999999984
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-30 Score=283.78 Aligned_cols=254 Identities=20% Similarity=0.272 Sum_probs=211.1
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
.+.+.+|.+.|++|+|+|++++||+|+.||.|+||++....
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--------------------------------------- 44 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--------------------------------------- 44 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---------------------------------------
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc---------------------------------------
Confidence 35678999999999999999999999999999999985321
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCc--EEEE
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKT--CLKI 603 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~--~~~~ 603 (927)
.+.+..+.+|...|++++|+++ .+|++++.|+.|++||+.+++ .+..
T Consensus 45 ----------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 96 (379)
T 3jrp_A 45 ----------------------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV 96 (379)
T ss_dssp ----------------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred ----------------------------ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee
Confidence 0234466789999999999864 789999999999999999987 5555
Q ss_pred Ee-cCCceEEEEEccCC--CCEEEEEECCCcEEEEeCCCC---cEEEeccCCCcEEEEEECC-------------CCCEE
Q 002407 604 FS-HSDYVTCIQFNPVD--DRYFISGSLDAKVRIWSIPER---QVVDWNDLHEMVTAACYTP-------------DGQGA 664 (927)
Q Consensus 604 ~~-h~~~V~~v~fsp~d--g~~L~sgs~Dg~I~IWDl~t~---~~v~~~~~~~~V~sla~sp-------------dg~~l 664 (927)
+. |...|.+++|+| + +.+|++++.|+.|++||+.+. .......+...|.+++|+| ++.+|
T Consensus 97 ~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l 175 (379)
T 3jrp_A 97 HAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 175 (379)
T ss_dssp ECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEE
T ss_pred ecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEE
Confidence 54 899999999999 7 899999999999999999886 3344567788999999999 69999
Q ss_pred EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC--CcEEEEEECCCcEEEEECCcc-----eEEE
Q 002407 665 LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS--SSEVLVTSADSRIRVVDGIDL-----VHKF 737 (927)
Q Consensus 665 ~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg--~~~Llsgs~Dg~I~VwD~~~~-----~~~~ 737 (927)
++++.|+.|++||++++........ ....|...|++++|+|++ ..+|++++.|+.|+|||.... ...+
T Consensus 176 ~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 250 (379)
T 3jrp_A 176 VTGGADNLVKIWKYNSDAQTYVLES-----TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL 250 (379)
T ss_dssp EEEETTSCEEEEEEETTTTEEEEEE-----EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEES
T ss_pred EEEeCCCeEEEEEecCCCcceeeEE-----EEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeee
Confidence 9999999999999987653322111 124788999999999984 458999999999999996542 2333
Q ss_pred EeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 738 KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 738 ~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
....+...+.+++|+|++++|++++.||.|+||++...
T Consensus 251 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 251 KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred ccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 33346778999999999999999999999999999864
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-29 Score=285.14 Aligned_cols=303 Identities=17% Similarity=0.306 Sum_probs=251.0
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
...+++|..++.|++|+..+++. .+.+.+|.+.|++++|+ +++|++|+.||+|++||+.+++....+ .
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~-----~ 196 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTGKC-----LRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTL-----Y 196 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCCE-----EEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEE-----C
T ss_pred CCEEEEEECCCcEEEEECCCCcE-----EEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEE-----C
Confidence 46788999999999999876643 35678999999999997 569999999999999999998776665 3
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCCc
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQ 579 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd~ 579 (927)
++...+.++.+. +..+++++.++.+ .+|++ .++.+..+.+|...|.++.| ...
T Consensus 197 ~h~~~v~~~~~~--~~~l~s~s~dg~i-----------------------~~wd~~~~~~~~~~~~~~~~v~~~~~-~~~ 250 (445)
T 2ovr_B 197 GHTSTVRCMHLH--EKRVVSGSRDATL-----------------------RVWDIETGQCLHVLMGHVAAVRCVQY-DGR 250 (445)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSEE-----------------------EEEESSSCCEEEEEECCSSCEEEEEE-CSS
T ss_pred CCCCcEEEEEec--CCEEEEEeCCCEE-----------------------EEEECCCCcEEEEEcCCcccEEEEEE-CCC
Confidence 566778888774 4567777777776 34443 35677888999999999999 347
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEE
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACY 657 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~ 657 (927)
.|++++.|+.|++||+.+++++..+. |...|.+++| ++.+|++++.|+.|++||+.+++.+..+ .+...+.++.+
T Consensus 251 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 327 (445)
T 2ovr_B 251 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL 327 (445)
T ss_dssp CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE
Confidence 89999999999999999999998887 9999999999 6789999999999999999999887644 45567877776
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce--E
Q 002407 658 TPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV--H 735 (927)
Q Consensus 658 spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~--~ 735 (927)
++.+|++|+.||.|++||+.+++....+... ..|...|++++|++ .+|++++.||.|++||..... .
T Consensus 328 --~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 328 --KDNILVSGNADSTVKIWDIKTGQCLQTLQGP------NKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIR 396 (445)
T ss_dssp --ETTEEEEEETTSCEEEEETTTCCEEEEECST------TSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEE
T ss_pred --eCCEEEEEeCCCeEEEEECCCCcEEEEEccC------CCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceee
Confidence 5779999999999999999998877665321 24888999999975 389999999999999965443 3
Q ss_pred EEEe---ecCCcceEEEEEecCCCEEEEEECCCc----EEEEECCCC
Q 002407 736 KFKG---FRNTNSQISASLTANGRYVVSASEDSY----VYVWKYEAE 775 (927)
Q Consensus 736 ~~~~---~~~~~~v~sv~fspdg~~Lasgs~Dg~----I~IWdl~s~ 775 (927)
.+.. ..+...+.+++|+|++.+|++++.||+ |.|||+...
T Consensus 397 ~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 397 NLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred eeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 3321 345778999999999999999999998 999999864
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-29 Score=305.98 Aligned_cols=282 Identities=18% Similarity=0.287 Sum_probs=234.1
Q ss_pred CCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccc
Q 002407 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 419 d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
+...++++|+.+++|++|+............+.+.+|...|++++|+|+|++|+||+.|++|+|||+.++.....+
T Consensus 393 ~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~---- 468 (694)
T 3dm0_A 393 DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF---- 468 (694)
T ss_dssp TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----
T ss_pred CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEE----
Confidence 4456889999999999999876554444455788999999999999999999999999999999999988776664
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEE----ccCCCCEEEEE
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF----QGHLDDVLDLS 574 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l----~gH~~~V~~l~ 574 (927)
.+|...|.++.|+|++..+++++.++.+..+ +........+ .+|...|.+++
T Consensus 469 -~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw-----------------------d~~~~~~~~~~~~~~~h~~~v~~~~ 524 (694)
T 3dm0_A 469 -VGHTKDVLSVAFSLDNRQIVSASRDRTIKLW-----------------------NTLGECKYTISEGGEGHRDWVSCVR 524 (694)
T ss_dssp -ECCSSCEEEEEECTTSSCEEEEETTSCEEEE-----------------------CTTSCEEEEECSSTTSCSSCEEEEE
T ss_pred -eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEE-----------------------ECCCCcceeeccCCCCCCCcEEEEE
Confidence 4678889999999999999999999888444 3333322222 47999999999
Q ss_pred ecCC---cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCC
Q 002407 575 WSKS---QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE 650 (927)
Q Consensus 575 ~spd---~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~ 650 (927)
|+|+ ..|++++.|++|++||+.++++...+. |...|++++|+| ++++|++++.|+.|++||+.+++.+....++.
T Consensus 525 ~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~ 603 (694)
T 3dm0_A 525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEANS 603 (694)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCBCSS
T ss_pred EeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEecCCC
Confidence 9997 379999999999999999999988887 999999999999 99999999999999999999999988888888
Q ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccc----------ccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK----------KRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~----------~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
.|.+++|+|++.+|++++ ++.|+|||+.++..+..+........ ...+...+++++|+|++. +|++++
T Consensus 604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~-~l~sgs 681 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS-TLFSGY 681 (694)
T ss_dssp CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSS-EEEEEE
T ss_pred cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCC-EEEEEc
Confidence 999999999998887765 56699999999988776543221100 011223478999999987 899999
Q ss_pred CCCcEEEEECC
Q 002407 721 ADSRIRVVDGI 731 (927)
Q Consensus 721 ~Dg~I~VwD~~ 731 (927)
.||.|+||+..
T Consensus 682 ~Dg~i~iW~i~ 692 (694)
T 3dm0_A 682 TDGVIRVWGIG 692 (694)
T ss_dssp TTSEEEEEEC-
T ss_pred CCCeEEEEecc
Confidence 99999999964
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-29 Score=284.80 Aligned_cols=272 Identities=18% Similarity=0.261 Sum_probs=222.7
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..++++..++.|++|+..+++...... ..|.+.|++|+|+|++++||+|+.||.|+|||+.+++
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~----~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~------------ 167 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAE----TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT------------ 167 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEE----CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC------------
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeee----cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe------------
Confidence 345667788999999988776554332 2389999999999999999999999999999986543
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL 581 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L 581 (927)
.+..+.+|...|.+++|++ ..|
T Consensus 168 ---------------------------------------------------------~~~~~~~~~~~v~~~~~~~-~~l 189 (401)
T 4aez_A 168 ---------------------------------------------------------KLRTMAGHQARVGCLSWNR-HVL 189 (401)
T ss_dssp ---------------------------------------------------------EEEEECCCSSCEEEEEEET-TEE
T ss_pred ---------------------------------------------------------EEEEecCCCCceEEEEECC-CEE
Confidence 2334567999999999954 689
Q ss_pred EEEeCCCcEEEEeCC-CCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEEC
Q 002407 582 LSSSMDKTVRLWHLS-SKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYT 658 (927)
Q Consensus 582 ~Sgs~DgtV~lWDl~-t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~s 658 (927)
++++.|+.|++||+. ....+..+. |...|.+++|+| ++++|++++.|+.|++||+.+++.+.. ..+...|.+++|+
T Consensus 190 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~ 268 (401)
T 4aez_A 190 SSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWC 268 (401)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEEC
T ss_pred EEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEEC
Confidence 999999999999999 455566665 999999999999 999999999999999999999887754 4577899999999
Q ss_pred CCCC-EEEEEE--CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE--ECCCcEEEEECCc-
Q 002407 659 PDGQ-GALVGS--YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT--SADSRIRVVDGID- 732 (927)
Q Consensus 659 pdg~-~l~tgs--~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg--s~Dg~I~VwD~~~- 732 (927)
|++. ++++++ .|+.|++||+.+++....+ .+...|++++|+|++. .++++ +.|+.|+|||...
T Consensus 269 p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~----------~~~~~v~~~~~s~~~~-~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 269 PWQSNLLATGGGTMDKQIHFWNAATGARVNTV----------DAGSQVTSLIWSPHSK-EIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp TTSTTEEEEECCTTTCEEEEEETTTCCEEEEE----------ECSSCEEEEEECSSSS-EEEEEECTTTCEEEEEEEETT
T ss_pred CCCCCEEEEecCCCCCEEEEEECCCCCEEEEE----------eCCCcEEEEEECCCCC-eEEEEeecCCCcEEEEecCCc
Confidence 9775 555554 6999999999998877654 3557899999999987 56664 3899999999654
Q ss_pred -ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 733 -LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 733 -~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
.........+...|.+++|+|++++|++++.||.|++|++.+++...
T Consensus 338 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 338 GLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred cceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 45555555677889999999999999999999999999999876544
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=292.60 Aligned_cols=285 Identities=12% Similarity=0.138 Sum_probs=219.3
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC--cccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES--ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~--~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
++.|.+.|++++|+|+|++||+|+.|+.|+||++.++ +....+ .+|...+.++.|+|++.++++++.++.+..
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-----~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-----SDHDKIVTCVDWAPKSNRIVTCSQDRNAYV 81 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-----CCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-----ecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 3557889999999999999999999999999999877 444443 467889999999999999999988887743
Q ss_pred ecccccccccccccCcccccceEeecCC----CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc---EE
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSD----KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT---CL 601 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~----k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~---~~ 601 (927)
|++.. ++...+.+|...|++++|+|+ .+|++++.|++|++||+.+++ +.
T Consensus 82 -----------------------wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 138 (377)
T 3dwl_C 82 -----------------------YEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS 138 (377)
T ss_dssp -----------------------C------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC
T ss_pred -----------------------EEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee
Confidence 33322 346778899999999999998 789999999999999999887 35
Q ss_pred EEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCC------------------CCcEEEeccCCCcEEEEEECCCC
Q 002407 602 KIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP------------------ERQVVDWNDLHEMVTAACYTPDG 661 (927)
Q Consensus 602 ~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~------------------t~~~v~~~~~~~~V~sla~spdg 661 (927)
..+. |...|++++|+| ++++|++++.|+.|++||+. .++++..+.+...|.+++|+|++
T Consensus 139 ~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 139 KHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSG 217 (377)
T ss_dssp EEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTS
T ss_pred eEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCC
Confidence 5554 899999999999 99999999999999999985 34455555777899999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce-------
Q 002407 662 QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV------- 734 (927)
Q Consensus 662 ~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~------- 734 (927)
++|++++.|+.|++||+.+++...... .....|...|++++|+|++. +|++++ ++.+.+|+.....
T Consensus 218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~-~l~~~~-~~~~~~~~~~~~~~~~~~~~ 290 (377)
T 3dwl_C 218 NALAYAGHDSSVTIAYPSAPEQPPRAL-----ITVKLSQLPLRSLLWANESA-IVAAGY-NYSPILLQGNESGWAHTRDL 290 (377)
T ss_dssp SCEEEEETTTEEC-CEECSTTSCEEEC-----CCEECSSSCEEEEEEEETTE-EEEEES-SSSEEEECCCC---CCSBCC
T ss_pred CEEEEEeCCCcEEEEECCCCCCcceee-----EeecCCCCceEEEEEcCCCC-EEEEEc-CCcEEEEEeCCCceEEEeee
Confidence 999999999999999999887621100 11247888999999999875 566665 4455577632100
Q ss_pred -------------------------------EEEEe--------------ecCCcceEEEEEecCC-C---EEEEEECCC
Q 002407 735 -------------------------------HKFKG--------------FRNTNSQISASLTANG-R---YVVSASEDS 765 (927)
Q Consensus 735 -------------------------------~~~~~--------------~~~~~~v~sv~fspdg-~---~Lasgs~Dg 765 (927)
..+.. ..|...|.++.+.+.. . .|+|++.||
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg 370 (377)
T 3dwl_C 291 DAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDG 370 (377)
T ss_dssp CSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTS
T ss_pred cccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCC
Confidence 11111 0166778888866543 3 699999999
Q ss_pred cEEEEEC
Q 002407 766 YVYVWKY 772 (927)
Q Consensus 766 ~I~IWdl 772 (927)
.|+|||+
T Consensus 371 ~i~iWdl 377 (377)
T 3dwl_C 371 RVVLWTL 377 (377)
T ss_dssp EEEEECC
T ss_pred cEEEecC
Confidence 9999986
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-28 Score=283.02 Aligned_cols=319 Identities=18% Similarity=0.284 Sum_probs=243.1
Q ss_pred eeEeecCCCCE-EEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 449 CQEIQAHNGSI-WSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 449 ~q~L~gH~~~I-~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
.+.+.+|.+.| .| ++++|++||+|+.||+|+|||+.+++.
T Consensus 111 ~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~------------------------------------- 151 (445)
T 2ovr_B 111 PKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKC------------------------------------- 151 (445)
T ss_dssp CEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCE-------------------------------------
T ss_pred eEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcE-------------------------------------
Confidence 35678999875 55 455789999999999999999865532
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h 606 (927)
+..+.+|...|++++|+ .+.|++++.|++|++||+.+++++..+. |
T Consensus 152 --------------------------------~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h 198 (445)
T 2ovr_B 152 --------------------------------LRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGH 198 (445)
T ss_dssp --------------------------------EEECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred --------------------------------EEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCC
Confidence 23456799999999998 4689999999999999999999998887 9
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
...|.++.|+ +++|++++.|+.|++||+.+++.+.. ..+...|.+++| ++.++++|+.||.|++||+.+++...
T Consensus 199 ~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 273 (445)
T 2ovr_B 199 TSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 273 (445)
T ss_dssp SSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred CCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE
Confidence 9999999995 46799999999999999999887764 456789999999 78899999999999999999988776
Q ss_pred ecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS 765 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg 765 (927)
.+ ..|...|+++.| ++. .+++++.|+.|++||............+...+.++.+ ++++|++++.||
T Consensus 274 ~~---------~~~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 339 (445)
T 2ovr_B 274 TL---------QGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADS 339 (445)
T ss_dssp EE---------CCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTS
T ss_pred Ee---------cCCCCceEEEEE--CCC-EEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCC
Confidence 64 378889999999 344 8999999999999997655444444445666776665 577999999999
Q ss_pred cEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcce
Q 002407 766 YVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATG 845 (927)
Q Consensus 766 ~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~ 845 (927)
.|++||+.++......... ..+..+ +..
T Consensus 340 ~i~vwd~~~~~~~~~~~~~----------------------------------------~~~~~~------------v~~ 367 (445)
T 2ovr_B 340 TVKIWDIKTGQCLQTLQGP----------------------------------------NKHQSA------------VTC 367 (445)
T ss_dssp CEEEEETTTCCEEEEECST----------------------------------------TSCSSC------------EEE
T ss_pred eEEEEECCCCcEEEEEccC----------------------------------------CCCCCC------------EEE
Confidence 9999999765422111000 001111 111
Q ss_pred eeecCCCCeEEEeccccccCccccccCchhhccc--------cccCCCceecccCCCCCcccCCCCCEEEEEcCCCc---
Q 002407 846 YTNSPLNGTISSATNSYFFDRISATWPEEKLVLT--------ARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGE--- 914 (927)
Q Consensus 846 ~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~--------~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~--- 914 (927)
++| ++.+|++++ .|+.+.+|+....... ..+..++. +++|+|+|.+|++|+.||+
T Consensus 368 ~~~--~~~~l~s~~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~--------~~~~s~~~~~la~~~~dg~~~~ 433 (445)
T 2ovr_B 368 LQF--NKNFVITSS----DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW--------RIRASNTKLVCAVGSRNGTEET 433 (445)
T ss_dssp EEE--CSSEEEEEE----TTSEEEEEETTTCCEEEEEEECTTGGGTCEEE--------EEEECSSEEEEEEECSSSSSCC
T ss_pred EEE--CCCEEEEEe----CCCeEEEEECCCCceeeeeeccccCCCCceEE--------EEEecCCEEEEEEcccCCCCcc
Confidence 223 356777766 6778888876532111 12222222 4799999999999999998
Q ss_pred -EEEeecCCCc
Q 002407 915 -IRAYQNFGLP 924 (927)
Q Consensus 915 -IrvW~~~glP 924 (927)
|.+|+--.-|
T Consensus 434 ~l~v~df~~~~ 444 (445)
T 2ovr_B 434 KLLVLDFDVDM 444 (445)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEECCCCC
Confidence 9999854433
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-30 Score=295.88 Aligned_cols=292 Identities=14% Similarity=0.147 Sum_probs=217.7
Q ss_pred eEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 450 QEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 450 q~L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
+...+|...|+||+|+| ++++||+|+.||+|+|||+.+++..
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~------------------------------------- 155 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP------------------------------------- 155 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------------------------------
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------------------------------
Confidence 45678999999999999 5779999999999999998765321
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-S-QHLLSSSMDKTVRLWHLSSKTCLKIFS- 605 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp-d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~- 605 (927)
.+..+.+|.+.|++|+|+| + .+|++++.|++|+|||+.++.......
T Consensus 156 ------------------------------~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 205 (435)
T 4e54_B 156 ------------------------------TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASS 205 (435)
T ss_dssp ------------------------------EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECC
T ss_pred ------------------------------eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEecc
Confidence 1223457999999999998 4 689999999999999998766544443
Q ss_pred --cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCC-EEEEEECCCeEEEEECCCCe
Q 002407 606 --HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 606 --h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~-~l~tgs~Dg~I~IwDl~~~~ 682 (927)
+...+.+++|+| ++++|++|+.||.|++||++...+..+..|...|++++|+|++. +|++++.|+.|+|||+++.+
T Consensus 206 ~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~ 284 (435)
T 4e54_B 206 DTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR 284 (435)
T ss_dssp SSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred CCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc
Confidence 345688999999 99999999999999999998777666777888999999999886 78899999999999998876
Q ss_pred eeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecC----CcceEEEEEecCCC
Q 002407 683 LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRN----TNSQISASLTANGR 756 (927)
Q Consensus 683 ~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~----~~~v~sv~fspdg~ 756 (927)
....+.. ...|...|++++|+|++. +|++++.|+.|+|||... ....+..+.+ ...+..+.|+|++.
T Consensus 285 ~~~~~~~------~~~h~~~v~~~~~spdg~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (435)
T 4e54_B 285 GKASFLY------SLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYN 357 (435)
T ss_dssp SSSCCSB------CCBCSSCEEECCBCTTSS-EEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSS
T ss_pred ccceEEE------eeeccccccceeECCCCC-eeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCC
Confidence 5443321 247889999999999987 899999999999999654 3333333322 12234567777777
Q ss_pred EEEEEE------------CCCcEEEEECCCCCCcccccc-cce-eeeeeeecCCCeEEEEecCCceeEEeecCC
Q 002407 757 YVVSAS------------EDSYVYVWKYEAESRPSRSKS-ITV-THSYEHFHCQDVSVAIPWPGVGDTWGLQDT 816 (927)
Q Consensus 757 ~Lasgs------------~Dg~I~IWdl~s~~~~~~~~~-~~~-~~~~~~~~~~~v~vavs~~g~~~i~~~~d~ 816 (927)
+++++. .++.|+|||+.++........ ... ......|++++..++...++.+.+|+..++
T Consensus 358 ~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~g 431 (435)
T 4e54_B 358 LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEA 431 (435)
T ss_dssp CEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC--
T ss_pred EEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcC
Confidence 777664 245799999998765443321 111 122234666655555555666666665543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=304.30 Aligned_cols=283 Identities=11% Similarity=0.116 Sum_probs=215.1
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCC------CCEEEEEeCCCcEEEEecCcCcccceeec
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD------GRYLASAGEDCVIHVWQVVESERKGELLE 496 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpd------G~~LaSgs~DgtVrVWdv~~~~~~~~l~~ 496 (927)
.+++++.+++|++|+...+++.. ...+.+.+|.+.|++|+|+|+ +.+||+++.||+|+|||+.++.......
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~-~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~- 252 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHC-VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF- 252 (524)
T ss_dssp -------CEEEEEEEEETTTCCE-EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-
T ss_pred hhccCCCCceEEEEEccCCCCCc-eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-
Confidence 45788999999999987765432 223557789999999999997 5799999999999999997553211000
Q ss_pred ccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEec
Q 002407 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (927)
Q Consensus 497 ~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~s 576 (927)
....++...+.+|...|++++|+
T Consensus 253 ---------------------------------------------------------~~~~~p~~~l~~h~~~v~sv~~s 275 (524)
T 2j04_B 253 ---------------------------------------------------------KMCEKPSLTLSLADSLITTFDFL 275 (524)
T ss_dssp ---------------------------------------------------------ECCCSCSEEECCTTTCEEEEEES
T ss_pred ---------------------------------------------------------eeecCceEEEEcCCCCEEEEEec
Confidence 00113445678899999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCc-EEEEEe-cCCceEEE--EEccCCC-CEEEEEECCCcEEEEeCCCCcEEEec-cCC-
Q 002407 577 KSQHLLSSSMDKTVRLWHLSSKT-CLKIFS-HSDYVTCI--QFNPVDD-RYFISGSLDAKVRIWSIPERQVVDWN-DLH- 649 (927)
Q Consensus 577 pd~~L~Sgs~DgtV~lWDl~t~~-~~~~~~-h~~~V~~v--~fsp~dg-~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~- 649 (927)
+++.|++|+.||+|++||+.++. +...+. |...|++| +|+| ++ .+|++++.|++|+|||+++++++..+ .+.
T Consensus 276 ~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~ 354 (524)
T 2j04_B 276 SPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR 354 (524)
T ss_dssp SSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS
T ss_pred CCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccccccc
Confidence 98899999999999999999764 344454 99999999 5677 76 89999999999999999887643322 222
Q ss_pred -CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 650 -EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 650 -~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
..|.+++|+|+++.|++++.|++|++||++++.....+ .+|...|++++|+|+++ .|++|+.|++|+||
T Consensus 355 ~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l---------~gH~~~V~sva~Sp~g~-~l~Sgs~Dgtv~lw 424 (524)
T 2j04_B 355 GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL---------VSRETTITAIGVSRLHP-MVLAGSADGSLIIT 424 (524)
T ss_dssp CCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE---------EECSSCEEEEECCSSCC-BCEEEETTTEEECC
T ss_pred cCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceee---------ecCCCceEEEEeCCCCC-eEEEEECCCEEEEE
Confidence 24789999999999999999999999999987765443 37999999999999987 79999999999999
Q ss_pred ECCc-----c-----------e----------------------------EEEEeecCCcceEEEEEecCCC---EEEEE
Q 002407 729 DGID-----L-----------V----------------------------HKFKGFRNTNSQISASLTANGR---YVVSA 761 (927)
Q Consensus 729 D~~~-----~-----------~----------------------------~~~~~~~~~~~v~sv~fspdg~---~Lasg 761 (927)
|... . + .......+...|.+++|+|++. +||+|
T Consensus 425 d~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg 504 (524)
T 2j04_B 425 NAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFS 504 (524)
T ss_dssp BSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEE
T ss_pred echHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhh
Confidence 8210 0 0 0001112456788899999964 99999
Q ss_pred ECCCcEEEEECCCC
Q 002407 762 SEDSYVYVWKYEAE 775 (927)
Q Consensus 762 s~Dg~I~IWdl~s~ 775 (927)
+.||.|+||++...
T Consensus 505 ~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 505 NSAGLLTLEYLSLE 518 (524)
T ss_dssp CTTSEEEEEECSCC
T ss_pred ccCceEEEEEcccc
Confidence 99999999999764
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=282.87 Aligned_cols=270 Identities=19% Similarity=0.297 Sum_probs=220.6
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
.++++|. +++|++|+..+++...++ .+.+|...|++|+|+|+|++||+|+.||+|+|||+.+++.
T Consensus 117 n~lAvgl-d~tV~lWd~~tg~~~~~~---~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~----------- 181 (420)
T 4gga_A 117 NVLAVAL-DNSVYLWSASSGDILQLL---QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR----------- 181 (420)
T ss_dssp SEEEEEE-TTEEEEEETTTCCEEEEE---ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----------
T ss_pred CEEEEEe-CCEEEEEECCCCCEEEEE---EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-----------
Confidence 4555554 789999999888765443 3568999999999999999999999999999999876532
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL 581 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L 581 (927)
+..+.+|...|.+++|++ ..|
T Consensus 182 ----------------------------------------------------------~~~~~~h~~~v~~~s~~~-~~l 202 (420)
T 4gga_A 182 ----------------------------------------------------------LRNMTSHSARVGSLSWNS-YIL 202 (420)
T ss_dssp ----------------------------------------------------------EEEECCCSSCEEEEEEET-TEE
T ss_pred ----------------------------------------------------------EEEEeCCCCceEEEeeCC-CEE
Confidence 335567999999998864 689
Q ss_pred EEEeCCCcEEEEeCCCCc-EEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc-----EEEeccCCCcEEE
Q 002407 582 LSSSMDKTVRLWHLSSKT-CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-----VVDWNDLHEMVTA 654 (927)
Q Consensus 582 ~Sgs~DgtV~lWDl~t~~-~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~-----~v~~~~~~~~V~s 654 (927)
++++.|+.+++||..... .+..+. |...+..+.|+| ++.+|++++.|+.|++|++.+++ +.....+...|.+
T Consensus 203 ~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~ 281 (420)
T 4gga_A 203 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281 (420)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEE
T ss_pred EEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCceee
Confidence 999999999999998654 445554 999999999999 99999999999999999998764 2345667789999
Q ss_pred EEECCCCC-EEEEE--ECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE--CCCcEEEEE
Q 002407 655 ACYTPDGQ-GALVG--SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS--ADSRIRVVD 729 (927)
Q Consensus 655 la~spdg~-~l~tg--s~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs--~Dg~I~VwD 729 (927)
++|+|++. .++++ +.|+.|++||+.++.....+ .+...+.++.|+|++. .+++++ .|+.|+|||
T Consensus 282 ~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~----------~~~~~v~~~~~~~~~~-~lv~~sg~~d~~I~iwd 350 (420)
T 4gga_A 282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV----------DAHSQVCSILWSPHYK-ELISGHGFAQNQLVIWK 350 (420)
T ss_dssp EEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE----------ECSSCEEEEEEETTTT-EEEEEECTTTCCEEEEE
T ss_pred eeeCCCcccEEEEEeecCCCEEEEEeCCccccceee----------ccccceeeeeecCCCC-eEEEEEecCCCEEEEEE
Confidence 99999664 45543 47999999999999887764 3456799999999987 455543 789999999
Q ss_pred CCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 730 GIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 730 ~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
............|...|.+++|+|||++||+|+.|++|+|||+.....
T Consensus 351 ~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 351 YPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 765554444445678899999999999999999999999999977543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-30 Score=292.56 Aligned_cols=316 Identities=14% Similarity=0.134 Sum_probs=228.7
Q ss_pred eecCCCceEEE-ccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEeCCC---C---cEEEEEecCCceEEEEEccCCCCEE
Q 002407 553 FALSDKPICSF-QGHLDDVLDLSWSK-S-QHLLSSSMDKTVRLWHLSS---K---TCLKIFSHSDYVTCIQFNPVDDRYF 623 (927)
Q Consensus 553 ~~~s~k~i~~l-~gH~~~V~~l~~sp-d-~~L~Sgs~DgtV~lWDl~t---~---~~~~~~~h~~~V~~v~fsp~dg~~L 623 (927)
|...++.+..+ .+|.+.|++++|+| + .+|++|+.|++|+|||+.+ + ++...+.|...|++++|+| ++++|
T Consensus 48 w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l 126 (437)
T 3gre_A 48 GNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP-NFDAF 126 (437)
T ss_dssp GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT-TSSEE
T ss_pred ccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC-CCCEE
Confidence 45677888899 89999999999999 7 7899999999999999876 3 3455567999999999999 99999
Q ss_pred EEEECCCcEEEEeCC---CCcEEEecc-------------CCCcEEEEE--ECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 624 ISGSLDAKVRIWSIP---ERQVVDWND-------------LHEMVTAAC--YTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 624 ~sgs~Dg~I~IWDl~---t~~~v~~~~-------------~~~~V~sla--~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
++++.|+.|++||+. +++.+.... +...+.++. +++++.+|++++.|+.|++||+++++...
T Consensus 127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 206 (437)
T 3gre_A 127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ 206 (437)
T ss_dssp EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence 999999999999994 444433221 455677776 66889999999999999999999988877
Q ss_pred ecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEe-ecCCcceEEEEEe----cCCCEEEE
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKG-FRNTNSQISASLT----ANGRYVVS 760 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~-~~~~~~v~sv~fs----pdg~~Las 760 (927)
.+.. ..|...|++++|+|++. +|++++.|+.|++||.......... ..+...|.+++|+ +++.+|++
T Consensus 207 ~~~~-------~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s 278 (437)
T 3gre_A 207 IIEN-------SPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVG 278 (437)
T ss_dssp EEEC-------CGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEE
T ss_pred EEcc-------CCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEE
Confidence 6531 12778999999999976 8999999999999998765443332 2456789999665 56889999
Q ss_pred EECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcc
Q 002407 761 ASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDC 840 (927)
Q Consensus 761 gs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~ 840 (927)
++.||.|+|||+.++.................|.+. +..+.. ..+.+....
T Consensus 279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~l~~-----------~~~~~~~~~ 329 (437)
T 3gre_A 279 GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI------------------EKGLEE-----------LNFCGIRSL 329 (437)
T ss_dssp ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCB------------------CSSGGG-----------CCCCCCCSG
T ss_pred EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccc------------------cccccc-----------ceecccccC
Confidence 999999999999876533222111100000111110 000000 001111122
Q ss_pred cCcceeeecCCCCeEEEeccccccCccccccCchhhcc---ccc------------------------------------
Q 002407 841 RSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL---TAR------------------------------------ 881 (927)
Q Consensus 841 ~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~---~~~------------------------------------ 881 (927)
..+..++|+ ++.+|++++ .|+.+++|+...... ..+
T Consensus 330 ~~v~~l~~~-~~~~l~s~~----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (437)
T 3gre_A 330 NALSTISVS-NDKILLTDE----ATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSL 404 (437)
T ss_dssp GGGCCEEEE-TTEEEEEEG----GGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-----------
T ss_pred CceEEEEEC-CceEEEecC----CCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccc
Confidence 334556789 778999987 789999999764321 112
Q ss_pred -cCCCceecccCCCCCcccCCC--CCEEEEEcCCCcEEEee
Q 002407 882 -NRSPRTSLDISNGISSSISAW--GMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 882 -~~s~v~s~~~~~~~~~a~S~d--G~vLvTgs~DG~IrvW~ 919 (927)
|...+. +++++++ +.+||||+.||.|++|+
T Consensus 405 ~h~~~I~--------~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 405 YHHDIIN--------SISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEE--------EEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccee--------eEeeeccCCceEEEEEcCCceEEEeC
Confidence 222222 4677776 88999999999999996
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=277.50 Aligned_cols=290 Identities=12% Similarity=0.091 Sum_probs=234.1
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCC-eecccccCCceeee
Q 002407 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKK 530 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~-~la~~~~~~~i~~~ 530 (927)
..+|.+.|++++|+|++++||+++.|+.|+||++.++.....+.. ...+...+.++.|+|++. +++++..++.+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i--- 81 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQ--SLRYKHPLLCCNFIDNTDLQIYVGTVQGEI--- 81 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEE--EEECSSCEEEEEEEESSSEEEEEEETTSCE---
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccccee--eeecCCceEEEEECCCCCcEEEEEcCCCeE---
Confidence 368999999999999999999999999999999988762221111 135677899999999999 89988888877
Q ss_pred cccccccccccccCcccccceEeec-CCCceEEEcc--CCCCEEEEEecCCcEEEEEeCCCcEEEEeCCC---------C
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG--HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSS---------K 598 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~g--H~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t---------~ 598 (927)
.+|++ .......+.+ |...|.+++|+|.+.|++++.|+.|++||+.+ +
T Consensus 82 --------------------~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 141 (342)
T 1yfq_A 82 --------------------LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKN 141 (342)
T ss_dssp --------------------EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEE
T ss_pred --------------------EEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccC
Confidence 55666 5566678888 99999999999977899999999999999988 7
Q ss_pred cEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcE---EEeccCCCcEEEEEECC-CCCEEEEEECCCeE
Q 002407 599 TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQV---VDWNDLHEMVTAACYTP-DGQGALVGSYKGSC 673 (927)
Q Consensus 599 ~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~---v~~~~~~~~V~sla~sp-dg~~l~tgs~Dg~I 673 (927)
+++..+.|...|.+++|+| ++ |++++.|+.|++||+.+ +.. .....+...+.+++|+| ++++|++++.+|.|
T Consensus 142 ~~~~~~~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i 218 (342)
T 1yfq_A 142 LNSNNTKVKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV 218 (342)
T ss_dssp SCSSSSSSCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEE
T ss_pred CeeeEEeeCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcE
Confidence 7777777999999999998 55 99999999999999988 442 23456678999999999 99999999999999
Q ss_pred EEEECCCC------eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecC-Ccce
Q 002407 674 HLYNTSEN------KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRN-TNSQ 746 (927)
Q Consensus 674 ~IwDl~~~------~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~-~~~v 746 (927)
++|++... +....+...........|...|++++|+|++. +|++++.|+.|++||............+ ...|
T Consensus 219 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v 297 (342)
T 1yfq_A 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV 297 (342)
T ss_dssp EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEECCCCSSSEE
T ss_pred EEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC-EEEEecCCceEEEEcCccHhHhhhhhcccCCCc
Confidence 99999876 33333221100000113455999999999887 7999999999999998766555555555 7788
Q ss_pred EEEEEecCCCEEEEEECCCc-EEEEEC
Q 002407 747 ISASLTANGRYVVSASEDSY-VYVWKY 772 (927)
Q Consensus 747 ~sv~fspdg~~Lasgs~Dg~-I~IWdl 772 (927)
.+++ |++++|++++.||. .+.|..
T Consensus 298 ~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 298 VKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred eEec--CCCCeEEEEecCCcccccccc
Confidence 8888 99999999999998 555554
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-29 Score=282.16 Aligned_cols=298 Identities=13% Similarity=0.057 Sum_probs=207.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCC-------cEEEEecCcCcccce--ee---cccccCccccEEEEccCCCCCeeccccc
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDC-------VIHVWQVVESERKGE--LL---EKQEDGHLNMLLLANGSPEPTSLSPKHL 523 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~Dg-------tVrVWdv~~~~~~~~--l~---~~~~~~~~~~v~~v~~spd~~~la~~~~ 523 (927)
.-+|++++|+|||++||+||.|. .|+||++........ +. ......+...+.++++. +..++.+..
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 34899999999999999998644 599999976543211 10 11122333344444433 233333222
Q ss_pred CCceeeecccccccccccccCcccccceEeecCC--Cc---e-----EEEccCCCCEEEEEecCC-cEEEE--EeCCCcE
Q 002407 524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD--KP---I-----CSFQGHLDDVLDLSWSKS-QHLLS--SSMDKTV 590 (927)
Q Consensus 524 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~--k~---i-----~~l~gH~~~V~~l~~spd-~~L~S--gs~DgtV 590 (927)
+........ ..+.. .++|.+.. .. + .....+...+.+++|+|| .+|++ ++.|++|
T Consensus 92 ~~~~~l~s~---------~~d~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i 159 (365)
T 4h5i_A 92 ENSTKITQG---------KGNKH---LRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIM 159 (365)
T ss_dssp CCHHHHHHT---------SCCCC---EEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEE
T ss_pred CCccEEEEe---------cCCCc---EEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEE
Confidence 211100000 00000 01121110 00 1 112235566899999999 45544 4579999
Q ss_pred EEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE---eccCCCcEEEEEECCCCCEEEEE
Q 002407 591 RLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD---WNDLHEMVTAACYTPDGQGALVG 667 (927)
Q Consensus 591 ~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~---~~~~~~~V~sla~spdg~~l~tg 667 (927)
+|||+.+++++..+.|...|.+|+|+| ++++|++++.+ .+++|+..+++.+. ...+...|.+++|+|++++++++
T Consensus 160 ~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~ 237 (365)
T 4h5i_A 160 RIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAA 237 (365)
T ss_dssp EEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEE
T ss_pred EEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEE
Confidence 999999999999999999999999999 99999998854 56677766666543 23455789999999999999999
Q ss_pred ECCC----eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEe-ecC
Q 002407 668 SYKG----SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKG-FRN 742 (927)
Q Consensus 668 s~Dg----~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~-~~~ 742 (927)
+.++ .+++|++.......... .....|...|++++|+|++. +|++++.|++|+|||..+....... ..|
T Consensus 238 s~d~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~~~~~~~~~~~gH 311 (365)
T 4h5i_A 238 SLKKGKGIVLTKISIKSGNTSVLRS-----KQVTNRFKGITSMDVDMKGE-LAVLASNDNSIALVKLKDLSMSKIFKQAH 311 (365)
T ss_dssp EESSSCCEEEEEEEEETTEEEEEEE-----EEEESSCSCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEETTSS
T ss_pred ecCCcceeEEeecccccceecceee-----eeecCCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECCCCcEEEEecCcc
Confidence 9887 68889987765432211 11247889999999999987 8999999999999998766554443 346
Q ss_pred CcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 743 TNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 743 ~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
...|++++|+|||++||+++.|++|+||++...
T Consensus 312 ~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 312 SFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 888999999999999999999999999999654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-28 Score=282.46 Aligned_cols=324 Identities=16% Similarity=0.261 Sum_probs=249.7
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
...++++|..++.|++|+..+++ ....+.+|.+.|++++|+|++ +|++|+.||+|+|||+.+++....+
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~~-----~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~----- 199 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINKK-----FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVF----- 199 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEE-----
T ss_pred CCCEEEEEcCCCcEEEEECCCCc-----EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEE-----
Confidence 34588999999999999987664 346678999999999999988 9999999999999999998766664
Q ss_pred cCccccEEEEccC--CCCCeecccccCCceeeecccccccccccccCcccccceEee--cCCCceEEEccCCCCEEEEEe
Q 002407 500 DGHLNMLLLANGS--PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA--LSDKPICSFQGHLDDVLDLSW 575 (927)
Q Consensus 500 ~~~~~~v~~v~~s--pd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~--~s~k~i~~l~gH~~~V~~l~~ 575 (927)
.++...+.++.+. +++.+++++..++.+..+................ .+..... .....+..+.+|...|.++..
T Consensus 200 ~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 278 (464)
T 3v7d_B 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVLRGHMASVRTVSG 278 (464)
T ss_dssp CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-SSEEESCGGGCTTEEEEECCCSSCEEEEEE
T ss_pred CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-cceEeeccCCCeEEEEEccCccceEEEEcC
Confidence 4577788888877 5788999999998887665443221111000000 0000000 112246678999999999854
Q ss_pred cCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEE
Q 002407 576 SKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVT 653 (927)
Q Consensus 576 spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~ 653 (927)
. ..+|++++.|++|++||+.+++++..+. |...|.+++|+| ++++|++|+.|+.|++||+.+++++..+ .|...|.
T Consensus 279 ~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 356 (464)
T 3v7d_B 279 H-GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG 356 (464)
T ss_dssp E-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred C-CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEE
Confidence 3 2789999999999999999999998887 999999999999 9999999999999999999999887654 5678999
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc
Q 002407 654 AACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL 733 (927)
Q Consensus 654 sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~ 733 (927)
+++|+ +.+|++++.||.|++||+.+....... .+...+..++|++++. +|++++ |+.|++||....
T Consensus 357 ~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 357 LLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY----------HHTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp EEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE----------ECTTCCCEEEEEECSS-EEEEEE-TTEEEEEETTTC
T ss_pred EEEEc--CCEEEEEeCCCcEEEEECCCCceeeee----------cCCCCccEEEEEeCCC-EEEEec-CCeEEEEECCCC
Confidence 99997 579999999999999999987655442 3556777889999876 677777 999999997665
Q ss_pred eEEEE-eecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 734 VHKFK-GFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 734 ~~~~~-~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
..... ...+...|.+++|+ +..++++++.||.+.+|-+
T Consensus 423 ~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 423 KLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp CEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred cEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 44433 34567889999997 4455666677777665543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=274.26 Aligned_cols=246 Identities=15% Similarity=0.162 Sum_probs=200.0
Q ss_pred EccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc--EEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCC
Q 002407 563 FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT--CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (927)
Q Consensus 563 l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~--~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~ 638 (927)
+..|...|++++|+|+ .+|++++.|+.|++||+.+++ .+..+. |...|.+++|+| ++++|++++.|+.|++||+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECC
Confidence 4459999999999999 778999999999999999987 777776 999999999999 99999999999999999998
Q ss_pred CCcEEE---eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 639 ERQVVD---WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 639 t~~~v~---~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
+++... ...+...|.+++|+|++++|++++.|+.|++||+.......... .....|...|++++|+|++. +
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~-~ 156 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK-----HIKKPIRSTVLSLDWHPNSV-L 156 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE-----EECTTCCSCEEEEEECTTSS-E
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee-----eeecccCCCeeEEEEcCCCC-E
Confidence 887443 45677899999999999999999999999999998876321111 01146788999999999876 8
Q ss_pred EEEEECCCcEEEEECC------------------cceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 716 VLVTSADSRIRVVDGI------------------DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~------------------~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
|++++.|+.|++||.. ..........+...+.+++|+|++++|++++.|+.|++||+.++..
T Consensus 157 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 236 (372)
T 1k8k_C 157 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 236 (372)
T ss_dssp EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence 9999999999999942 2223333334677899999999999999999999999999998776
Q ss_pred cccccccceeeeeeeecCCCeEEEEecCCceeEEeecC
Q 002407 778 PSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQD 815 (927)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d 815 (927)
...............|++++..++...++.+.+|....
T Consensus 237 ~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 237 VATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred eEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 55544444344556667777777777778888887766
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=285.53 Aligned_cols=280 Identities=16% Similarity=0.251 Sum_probs=227.8
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
.+++++..++.|++|+....... ......+.+|.+.|++|+|+| ++++||+|+.||+|+||++.++.....+
T Consensus 48 ~~~~~~~~~g~i~v~~~~~~~~~-~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~------ 120 (402)
T 2aq5_A 48 ALICEASGGGAFLVLPLGKTGRV-DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL------ 120 (402)
T ss_dssp EEEBCCSSSCCEEEEETTCCEEC-CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB------
T ss_pred EEEEEEcCCCEEEEEECccCCCC-CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc------
Confidence 34556888999999997543211 122345789999999999999 9999999999999999999765422110
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-- 578 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-- 578 (927)
.+++..+.+|...|++++|+|+
T Consensus 121 --------------------------------------------------------~~~~~~~~~h~~~v~~~~~~p~~~ 144 (402)
T 2aq5_A 121 --------------------------------------------------------REPVITLEGHTKRVGIVAWHPTAQ 144 (402)
T ss_dssp --------------------------------------------------------CSCSEEEECCSSCEEEEEECSSBT
T ss_pred --------------------------------------------------------CCceEEecCCCCeEEEEEECcCCC
Confidence 1345577889999999999998
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEE--e-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec--cCCCc-E
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIF--S-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--DLHEM-V 652 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~--~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~--~~~~~-V 652 (927)
.+|++++.|++|++||+.+++++..+ . |...|++++|+| ++++|++++.|+.|++||+++++.+..+ .+... +
T Consensus 145 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 223 (402)
T 2aq5_A 145 NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP 223 (402)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSC
T ss_pred CEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcc
Confidence 47999999999999999999999888 4 999999999999 9999999999999999999999887654 44443 8
Q ss_pred EEEEECCCCCEEEEE---ECCCeEEEEECCCCeee-eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 653 TAACYTPDGQGALVG---SYKGSCHLYNTSENKLQ-QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 653 ~sla~spdg~~l~tg---s~Dg~I~IwDl~~~~~~-~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
..++|+|++.+|++| +.++.|++||+.+.... .... ..+...|.+++|+|++..++++++.|+.|++|
T Consensus 224 ~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~ 295 (402)
T 2aq5_A 224 VHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE--------LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF 295 (402)
T ss_dssp CEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE--------CCCCSSCEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred eEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe--------ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEE
Confidence 999999999999999 78999999999886542 1111 25667899999999988444566689999999
Q ss_pred ECCc---ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 729 DGID---LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 729 D~~~---~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|... ....+..+.+...+.+++|+|++.++++ .++.+++|++.++
T Consensus 296 d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 296 EITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp EECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred EecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 9543 2566677767788999999999998875 5679999999864
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-29 Score=283.43 Aligned_cols=253 Identities=19% Similarity=0.348 Sum_probs=197.8
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
.|.+.|++|+|+|+|++||+|+.||.|+||++.+++...... ..
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~----------------------------~~-------- 69 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS----------------------------RG-------- 69 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC----------------------------CC--------
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc----------------------------cc--------
Confidence 378999999999999999999999999999987654211100 00
Q ss_pred ccccccccccCcccccceEeecCCCceEEEccCC------------CCEEEEEecCC---cEEEEEeCCCcEEEEeCCCC
Q 002407 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHL------------DDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSK 598 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~------------~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~ 598 (927)
..+.+..+.+|. ..|++++|+|+ ..|++++.|++|++||+.++
T Consensus 70 ----------------------~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~ 127 (447)
T 3dw8_B 70 ----------------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISER 127 (447)
T ss_dssp ----------------------CEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEE
T ss_pred ----------------------ceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccc
Confidence 012345666787 88999999998 48999999999999999764
Q ss_pred cEE---------------------------------------EEE--ecCCceEEEEEccCCCCEEEEEECCCcEEEEeC
Q 002407 599 TCL---------------------------------------KIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637 (927)
Q Consensus 599 ~~~---------------------------------------~~~--~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl 637 (927)
... ..+ .|...|++++|+| ++++|++| .|+.|++||+
T Consensus 128 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~ 205 (447)
T 3dw8_B 128 DKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYLSA-DDLRINLWHL 205 (447)
T ss_dssp EEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEET
T ss_pred cCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEEC
Confidence 432 122 3999999999999 99999998 7999999999
Q ss_pred CC-CcEEE--------eccCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCCee----eeecccccccccccCCC---
Q 002407 638 PE-RQVVD--------WNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKL----QQKSPINLQNKKKRSHQ--- 700 (927)
Q Consensus 638 ~t-~~~v~--------~~~~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~----~~~~~i~~~~~~~~~h~--- 700 (927)
.+ ++.+. ...+...|++++|+|++ .+|++|+.||.|++||+++++. ...+ ..|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~~ 276 (447)
T 3dw8_B 206 EITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLF---------EEPEDPS 276 (447)
T ss_dssp TEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEE---------CCC----
T ss_pred CCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEe---------ccCCCcc
Confidence 84 44444 33667889999999998 9999999999999999998875 2222 2343
Q ss_pred ---------CCeEEEEEcCCCCcEEEEEECCCcEEEEECCc---ceEEEEeecCCcc-------------eEEEEEecCC
Q 002407 701 ---------RKITGFQFAPGSSSEVLVTSADSRIRVVDGID---LVHKFKGFRNTNS-------------QISASLTANG 755 (927)
Q Consensus 701 ---------~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~---~~~~~~~~~~~~~-------------v~sv~fspdg 755 (927)
..|++++|+|++. +|++++. +.|+|||... ....+..+..... +..++|+|++
T Consensus 277 ~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~ 354 (447)
T 3dw8_B 277 NRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD 354 (447)
T ss_dssp -CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS
T ss_pred ccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCC
Confidence 3899999999887 7888888 9999999653 4455555432111 3348999999
Q ss_pred CEEEEEECCCcEEEEECCCCCC
Q 002407 756 RYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 756 ~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
++|++++.||.|+|||+.++..
T Consensus 355 ~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 355 SVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp SEEEEECSTTEEEEEETTTCCE
T ss_pred CEEEEeccCCEEEEEEcCCCcc
Confidence 9999999999999999988653
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=282.28 Aligned_cols=242 Identities=13% Similarity=0.149 Sum_probs=187.3
Q ss_pred EccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC--cEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCC
Q 002407 563 FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK--TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (927)
Q Consensus 563 l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~--~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~ 638 (927)
+..|.+.|++++|+|+ .+|++++.|++|+|||+.++ +++..+. |...|++++|+| ++++|++++.|+.|++||+.
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC---
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcC
Confidence 4457789999999999 78999999999999999988 5666665 999999999999 89999999999999999999
Q ss_pred CCc----EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCee---eeecccccccccccCCCCCeEEEEEcCC
Q 002407 639 ERQ----VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL---QQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 639 t~~----~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~---~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
+++ ......+...|.+++|+|++++|++++.|+.|++||+.+++. ...+. ..|...|++++|+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------~~h~~~v~~~~~~~~ 157 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK--------RPLRSTILSLDWHPN 157 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC--------SSCCSCEEEEEECTT
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee--------cccCCCeEEEEEcCC
Confidence 876 555677888999999999999999999999999999988763 22221 138899999999998
Q ss_pred CCcEEEEEECCCcEEEEECCc-----------------ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 712 SSSEVLVTSADSRIRVVDGID-----------------LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD~~~-----------------~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+. +|++++.|+.|++||... .........+...|.+++|+|++++|++++.|+.|+|||+.+
T Consensus 158 ~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 236 (377)
T 3dwl_C 158 NV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA 236 (377)
T ss_dssp SS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred CC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 76 899999999999999631 112222226678899999999999999999999999999999
Q ss_pred CCC----cccccccceeeeeeeecCCCeEEEEecCCceeEEeec
Q 002407 775 ESR----PSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQ 814 (927)
Q Consensus 775 ~~~----~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~ 814 (927)
+.. ......+........|++++..++...++...+|...
T Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 237 PEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp TTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred CCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 876 3444444444455667777777777666666666544
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-28 Score=274.52 Aligned_cols=330 Identities=15% Similarity=0.179 Sum_probs=225.5
Q ss_pred CCceEEEccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEeCCCCcEEEEEe--------------cCCceEEEEEccCCC
Q 002407 557 DKPICSFQGHLDDVLDLSWSK-S-QHLLSSSMDKTVRLWHLSSKTCLKIFS--------------HSDYVTCIQFNPVDD 620 (927)
Q Consensus 557 ~k~i~~l~gH~~~V~~l~~sp-d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--------------h~~~V~~v~fsp~dg 620 (927)
.+....+.+|.+.|++++|+| + .+|++++.|+.|++||+.+++....+. |...|.+++|+|.++
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT 112 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence 356677889999999999999 7 789999999999999999876554443 899999999999777
Q ss_pred CEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCC---CCEEEEEECCCeEEEEECCCCeeeeeccccccccccc
Q 002407 621 RYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPD---GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKR 697 (927)
Q Consensus 621 ~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spd---g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~ 697 (927)
.+|++++.|+.|++||+.+++.+....+...+.+++++|. +.++++++.++.|++||+.+++....+ .
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~---------~ 183 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL---------Q 183 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE---------C
T ss_pred cEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee---------c
Confidence 8999999999999999999999988888999999999984 459999999999999999988766554 3
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce---EEEEe-------------ecCCcceEEEEEecCCCEEEEE
Q 002407 698 SHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV---HKFKG-------------FRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 698 ~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~---~~~~~-------------~~~~~~v~sv~fspdg~~Lasg 761 (927)
.|...|++++|+|++..+|++++.|+.|++||..... ..+.. ..+...+.+++|+|++++|+++
T Consensus 184 ~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 263 (408)
T 4a11_B 184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263 (408)
T ss_dssp CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence 7889999999999988779999999999999975432 22211 2456789999999999999999
Q ss_pred ECCCcEEEEECCCCCCcccccccc------eeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceecc
Q 002407 762 SEDSYVYVWKYEAESRPSRSKSIT------VTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEIS 835 (927)
Q Consensus 762 s~Dg~I~IWdl~s~~~~~~~~~~~------~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~ 835 (927)
+.||.|++||+.++.......... ..............++...++.+.+|........ ..+.
T Consensus 264 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------------~~~~ 331 (408)
T 4a11_B 264 GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI------------TMLK 331 (408)
T ss_dssp ETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE------------EEEC
T ss_pred cCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce------------eeec
Confidence 999999999999876543321110 0011111122334445556666666665443221 1111
Q ss_pred CCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccccccCCCceecccCCCCCcccC-CCCCEEEEEcCCCc
Q 002407 836 GNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTARNRSPRTSLDISNGISSSIS-AWGMVIVTAGLRGE 914 (927)
Q Consensus 836 ~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~~~~~s~v~s~~~~~~~~~a~S-~dG~vLvTgs~DG~ 914 (927)
++. ..+..++|+|++.+|++++ .|+.+.+|+.+............... .+. .....+.+++.||.
T Consensus 332 ~~~--~~v~~~~~s~~~~~l~s~~----~dg~i~iw~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 397 (408)
T 4a11_B 332 GHY--KTVDCCVFQSNFQELYSGS----RDCNILAWVPSLYEPVPDDDETTTKS--------QLNPAFEDAWSSSDEEGG 397 (408)
T ss_dssp CCS--SCEEEEEEETTTTEEEEEE----TTSCEEEEEECC----------------------------------------
T ss_pred cCC--CeEEEEEEcCCCCEEEEEC----CCCeEEEEeCCCCCccCCCCceEecc--------ccccccceeecccCccCc
Confidence 221 2344567999999999987 78999999987543222111111111 111 24455677888999
Q ss_pred EEEeecC
Q 002407 915 IRAYQNF 921 (927)
Q Consensus 915 IrvW~~~ 921 (927)
|++|.+.
T Consensus 398 ~~~W~~~ 404 (408)
T 4a11_B 398 TSAWSHP 404 (408)
T ss_dssp -------
T ss_pred eeecCCc
Confidence 9999854
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-28 Score=271.62 Aligned_cols=296 Identities=11% Similarity=0.072 Sum_probs=223.8
Q ss_pred EEccCCCCEEEEEecC-----CcEEEEEeCCCcEEEEeCCCCcEEEEEe------cCCceEEEEEccCC----CCEEEEE
Q 002407 562 SFQGHLDDVLDLSWSK-----SQHLLSSSMDKTVRLWHLSSKTCLKIFS------HSDYVTCIQFNPVD----DRYFISG 626 (927)
Q Consensus 562 ~l~gH~~~V~~l~~sp-----d~~L~Sgs~DgtV~lWDl~t~~~~~~~~------h~~~V~~v~fsp~d----g~~L~sg 626 (927)
...+|...|++++|+| +..+++++.++.|++||+.+++.+..+. |...|++++|+| + +.+|+++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~ 91 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY-DSNTSHPLLAVA 91 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE-CTTTCCEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc-CCCCCCCEEEEe
Confidence 3458999999999998 2568888888899999999888776664 567899999999 7 6799999
Q ss_pred ECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeE
Q 002407 627 SLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704 (927)
Q Consensus 627 s~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt 704 (927)
+.||.|++||+.+++.+..+ .+...|.+++|+| ++.+|++++.||.|++||+.+++....+.. ...|...|+
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~v~ 165 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG------VEGHRDEVL 165 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS------TTSCSSCEE
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc------cccccCcee
Confidence 99999999999998877655 4778999999999 999999999999999999999887765421 137889999
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECCcceEE----------------------------EEeecCCcceEEEEEecCCC
Q 002407 705 GFQFAPGSSSEVLVTSADSRIRVVDGIDLVHK----------------------------FKGFRNTNSQISASLTANGR 756 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~----------------------------~~~~~~~~~v~sv~fspdg~ 756 (927)
+++|+|++. +|++++.|+.|++||....... .....+...|.+++|+ ++
T Consensus 166 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 242 (366)
T 3k26_A 166 SADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD 242 (366)
T ss_dssp EEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT
T ss_pred EEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC
Confidence 999999876 8999999999999996532111 0111256778999998 77
Q ss_pred EEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccC
Q 002407 757 YVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISG 836 (927)
Q Consensus 757 ~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~ 836 (927)
+|++++.|+.|++||+.+.......... ......+ +..+. .+.
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~---------~~~~~~~-----------------~~~~~---~~~-------- 285 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKP---------SESNVTI-----------------LGRFD---YSQ-------- 285 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCT---------TCCCEEE-----------------EEEEE---CSS--------
T ss_pred EEEEEecCCEEEEEeCCCcccccccccc---------CCcchhe-----------------ecccc---ccC--------
Confidence 9999999999999999876543221000 0000000 00000 111
Q ss_pred CCcccCcceeeecCC--CCeEEEeccccccCccccccCchhhcc-------cccc--CCCceecccCCCCCcccCCCCCE
Q 002407 837 NEDCRSATGYTNSPL--NGTISSATNSYFFDRISATWPEEKLVL-------TARN--RSPRTSLDISNGISSSISAWGMV 905 (927)
Q Consensus 837 ~~~~~~~~~~~fSPd--g~~Lasas~~~~~d~~v~~W~~e~l~~-------~~~~--~s~v~s~~~~~~~~~a~S~dG~v 905 (927)
.....++|+|+ +.+|++++ .|+.+.+|+...... ...| ..++. +++|+|+|++
T Consensus 286 ----~~v~~~~~s~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~--------~~~~s~~~~~ 349 (366)
T 3k26_A 286 ----CDIWYMRFSMDFWQKMLALGN----QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIR--------QTSFSRDSSI 349 (366)
T ss_dssp ----CCSSCCCCEECTTSSEEEEEC----TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEE--------EEEECTTSSE
T ss_pred ----CcEEEEEEcCCCCCcEEEEEe----cCCcEEEEECCCCCCccccceEEcccccCCceE--------EEEeCCCCCe
Confidence 11223458899 99999987 788999999764311 1222 23333 5799999999
Q ss_pred EEEEcCCCcEEEeec
Q 002407 906 IVTAGLRGEIRAYQN 920 (927)
Q Consensus 906 LvTgs~DG~IrvW~~ 920 (927)
|+||+.||.|++|+.
T Consensus 350 l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 350 LIAVCDDASIWRWDR 364 (366)
T ss_dssp EEEEETTSEEEEEEC
T ss_pred EEEEeCCCEEEEEEe
Confidence 999999999999984
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-27 Score=260.25 Aligned_cols=239 Identities=15% Similarity=0.242 Sum_probs=192.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccc
Q 002407 459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR 538 (927)
Q Consensus 459 I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~ 538 (927)
..+|+||+++ +||+| .|++|+|||+.+++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-------------------------------------------- 61 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-------------------------------------------- 61 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE--------------------------------------------
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE--------------------------------------------
Confidence 4679999986 77776 4999999999877543322
Q ss_pred cccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEc
Q 002407 539 KSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFN 616 (927)
Q Consensus 539 ~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fs 616 (927)
.+.+|...|++++|+|+ .+|++|+.|++|++||+.+++++..+. |...+.++.+
T Consensus 62 -----------------------~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~- 117 (318)
T 4ggc_A 62 -----------------------QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW- 117 (318)
T ss_dssp -----------------------ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE-
T ss_pred -----------------------EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec-
Confidence 33468889999999998 789999999999999999999998887 8888887766
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCcE--EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccc
Q 002407 617 PVDDRYFISGSLDAKVRIWSIPERQV--VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK 694 (927)
Q Consensus 617 p~dg~~L~sgs~Dg~I~IWDl~t~~~--v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~ 694 (927)
++.+|++++.++.+++|+...... .....+...+..+.+.+++++|++++.|+.|++||+.+++.......
T Consensus 118 --~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----- 190 (318)
T 4ggc_A 118 --NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ----- 190 (318)
T ss_dssp --ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE-----
T ss_pred --CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee-----
Confidence 457999999999999999887543 34567778999999999999999999999999999988664332211
Q ss_pred cccCCCCCeEEEEEcCCCCcEEEE--EECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEE--CCCcEEEE
Q 002407 695 KKRSHQRKITGFQFAPGSSSEVLV--TSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSAS--EDSYVYVW 770 (927)
Q Consensus 695 ~~~~h~~~Vtsl~fspdg~~~Lls--gs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs--~Dg~I~IW 770 (927)
....+...|.++++.|.+...+.+ ++.++.|++||......... ..+...+..+.|++++..+++++ .|+.|+||
T Consensus 191 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iw 269 (318)
T 4ggc_A 191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIW 269 (318)
T ss_dssp EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEE
T ss_pred eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEE
Confidence 124677889999999988766544 45789999999765444333 33566789999999999988765 79999999
Q ss_pred ECCCC
Q 002407 771 KYEAE 775 (927)
Q Consensus 771 dl~s~ 775 (927)
|+.++
T Consensus 270 d~~~~ 274 (318)
T 4ggc_A 270 KYPTM 274 (318)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 98764
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-27 Score=259.07 Aligned_cols=268 Identities=18% Similarity=0.270 Sum_probs=214.9
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCc
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~ 502 (927)
++++| .+++|++|+..+++....+ .+.+|...|++|+|+|+|++||+|+.||+|+||++.+++.
T Consensus 38 ~lAvg-~D~tV~iWd~~tg~~~~~~---~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~------------ 101 (318)
T 4ggc_A 38 VLAVA-LDNSVYLWSASSGDILQLL---QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR------------ 101 (318)
T ss_dssp EEEEE-ETTEEEEEETTTCCEEEEE---ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE------------
T ss_pred EEEEE-eCCEEEEEECCCCCEEEEE---EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee------------
Confidence 44555 4789999999887654433 4568999999999999999999999999999999876542
Q ss_pred cccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEE
Q 002407 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLL 582 (927)
Q Consensus 503 ~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~ 582 (927)
+..+.+|...+.++.+.+ ..|+
T Consensus 102 ---------------------------------------------------------~~~~~~h~~~~~~~~~~~-~~l~ 123 (318)
T 4ggc_A 102 ---------------------------------------------------------LRNMTSHSARVGSLSWNS-YILS 123 (318)
T ss_dssp ---------------------------------------------------------EEEEECCSSCEEEEEEET-TEEE
T ss_pred ---------------------------------------------------------EEEecCccceEEEeecCC-CEEE
Confidence 234557888888777654 6799
Q ss_pred EEeCCCcEEEEeCCCCcE-EEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE-----EEeccCCCcEEEE
Q 002407 583 SSSMDKTVRLWHLSSKTC-LKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-----VDWNDLHEMVTAA 655 (927)
Q Consensus 583 Sgs~DgtV~lWDl~t~~~-~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~-----v~~~~~~~~V~sl 655 (927)
+++.++.+++|+...... +..+. |...+..+.|.+ ++++|++++.|+.|++||+.+++. .....+...|.++
T Consensus 124 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 202 (318)
T 4ggc_A 124 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202 (318)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEE
T ss_pred EEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEE
Confidence 999999999999987643 44444 999999999999 999999999999999999987652 3455566789999
Q ss_pred EECCCCCEE---EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE-ECCCcEEEEECC
Q 002407 656 CYTPDGQGA---LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT-SADSRIRVVDGI 731 (927)
Q Consensus 656 a~spdg~~l---~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg-s~Dg~I~VwD~~ 731 (927)
+++|++..+ ++++.++.|++||.......... .+...+..+.|.|.+..+++++ +.|+.|+|||..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~ 272 (318)
T 4ggc_A 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV----------DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP 272 (318)
T ss_dssp EECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE----------ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred EecCCCCcEEEEEecCCCCEEEEEecccccccccc----------cceeeeeeeeecccccceEEEEEcCCCEEEEEECC
Confidence 999976543 35667899999999987766542 5667899999999987444333 379999999976
Q ss_pred cceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 732 DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 732 ~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
+.........|...|.+++|+|+|++||+|+.||+|+|||+...
T Consensus 273 ~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 273 TMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 55444444456788999999999999999999999999999764
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-27 Score=273.98 Aligned_cols=240 Identities=15% Similarity=0.224 Sum_probs=195.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccccc
Q 002407 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (927)
Q Consensus 458 ~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~ 537 (927)
.++.|+||++ ++||+|. |++|+|||+.+++....
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-------------------------------------------- 140 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQL-------------------------------------------- 140 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEE--------------------------------------------
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEE--------------------------------------------
Confidence 3567999986 4787775 99999999987753322
Q ss_pred ccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEE
Q 002407 538 RKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQF 615 (927)
Q Consensus 538 ~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~f 615 (927)
..+.+|...|++|+|+|+ .+|++|+.|++|+|||+.+++++..+. |...|.++.+
T Consensus 141 -----------------------~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~ 197 (420)
T 4gga_A 141 -----------------------LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW 197 (420)
T ss_dssp -----------------------EECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred -----------------------EEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee
Confidence 134568889999999999 789999999999999999999998887 9999999888
Q ss_pred ccCCCCEEEEEECCCcEEEEeCCCCcE--EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccc
Q 002407 616 NPVDDRYFISGSLDAKVRIWSIPERQV--VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQN 693 (927)
Q Consensus 616 sp~dg~~L~sgs~Dg~I~IWDl~t~~~--v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~ 693 (927)
+ +.+|++|+.|+.+++||...... .....|...+..+.++|++.++++++.|+.|++|++.+++......
T Consensus 198 ~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~----- 269 (420)
T 4gga_A 198 N---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----- 269 (420)
T ss_dssp E---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS-----
T ss_pred C---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee-----
Confidence 5 57999999999999999886432 3456777899999999999999999999999999998775432211
Q ss_pred ccccCCCCCeEEEEEcCCCCcEEEEE--ECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEE--CCCcEEE
Q 002407 694 KKKRSHQRKITGFQFAPGSSSEVLVT--SADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSAS--EDSYVYV 769 (927)
Q Consensus 694 ~~~~~h~~~Vtsl~fspdg~~~Llsg--s~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs--~Dg~I~I 769 (927)
.....|...|.+++|+|.+..+++++ +.|+.|++||........... ....+.++.|+++++.|++++ .|+.|+|
T Consensus 270 ~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~i 348 (420)
T 4gga_A 270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVI 348 (420)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEE
T ss_pred eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEE
Confidence 11247888999999999988777765 479999999977655444333 456788999999999998876 7999999
Q ss_pred EECCCC
Q 002407 770 WKYEAE 775 (927)
Q Consensus 770 Wdl~s~ 775 (927)
||+.++
T Consensus 349 wd~~~~ 354 (420)
T 4gga_A 349 WKYPTM 354 (420)
T ss_dssp EETTTC
T ss_pred EECCCC
Confidence 998764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-28 Score=272.82 Aligned_cols=299 Identities=8% Similarity=0.069 Sum_probs=227.8
Q ss_pred CCeEEEccCceEEEEeccCccccc-ceeeeeEeecCCCCEEEEEEcCC----C---CEEEEEeCCCcEEEEecCcCcccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLT-ALYKCQEIQAHNGSIWSIKFSLD----G---RYLASAGEDCVIHVWQVVESERKG 492 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~-~l~~~q~L~gH~~~I~~vafSpd----G---~~LaSgs~DgtVrVWdv~~~~~~~ 492 (927)
..+++++..++.|++|+....+.. .......+.+|...|++|+|+|+ | ++|++++.|+.|+||++.+++...
T Consensus 26 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~ 105 (397)
T 1sq9_A 26 NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETK 105 (397)
T ss_dssp SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTC
T ss_pred CCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccc
Confidence 378899999999999998876511 11234567899999999999999 9 999999999999999999887521
Q ss_pred eeecccccCc-----cccEEEEccC----CCCCe-ecccccCCceeeecccccccccccccCcccccceEeecCCCceEE
Q 002407 493 ELLEKQEDGH-----LNMLLLANGS----PEPTS-LSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS 562 (927)
Q Consensus 493 ~l~~~~~~~~-----~~~v~~v~~s----pd~~~-la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~ 562 (927)
.........+ ...+.++.|+ |++.. ++++..++.+..+........... .. +.-.+...
T Consensus 106 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~---------~~~~~~~~ 174 (397)
T 1sq9_A 106 KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS--LT---------LNWSPTLE 174 (397)
T ss_dssp CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH--TT---------TCCCCEEE
T ss_pred cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc--ce---------eeccCcce
Confidence 1111112334 4789999999 99998 998888887755433220000000 00 00011124
Q ss_pred E-------ccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe----c---CCceEEEEEccCCCCEEEEEEC
Q 002407 563 F-------QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS----H---SDYVTCIQFNPVDDRYFISGSL 628 (927)
Q Consensus 563 l-------~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~----h---~~~V~~v~fsp~dg~~L~sgs~ 628 (927)
+ ..|...|.+++|+|++.|++++.|+.|++||+.+++++..+. | ...|.+++|+| ++++|++++.
T Consensus 175 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~ 253 (397)
T 1sq9_A 175 LQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHD 253 (397)
T ss_dssp EEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEE
T ss_pred eeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC-CCCEEEEEec
Confidence 4 458999999999998888899999999999999999888876 5 89999999999 9999999999
Q ss_pred C---CcEEEEeCCCCcEEEecc--------------CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccc
Q 002407 629 D---AKVRIWSIPERQVVDWND--------------LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL 691 (927)
Q Consensus 629 D---g~I~IWDl~t~~~v~~~~--------------~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~ 691 (927)
| +.|++||+.+++.+..+. +...|.+++|+|++++|++++.||.|++||+.+++....+....
T Consensus 254 d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 333 (397)
T 1sq9_A 254 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 333 (397)
T ss_dssp ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEeccc
Confidence 9 999999999988776554 67899999999999999999999999999999998877654211
Q ss_pred cc------------ccccCCCCCeEEEEEcCCCC---------cEEEEEECCCcEEEEECC
Q 002407 692 QN------------KKKRSHQRKITGFQFAPGSS---------SEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 692 ~~------------~~~~~h~~~Vtsl~fspdg~---------~~Llsgs~Dg~I~VwD~~ 731 (927)
.. .....|...|++++|+|++. .+|++++.|+.|++||..
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 334 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp GGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred CcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 00 00012388999999999973 489999999999999953
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=271.64 Aligned_cols=240 Identities=13% Similarity=0.221 Sum_probs=196.9
Q ss_pred eecCCCCEE--EEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 452 IQAHNGSIW--SIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 452 L~gH~~~I~--~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
..+|...+. +++|++ ..|++++.|+.|+||++.+++....+
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~----------------------------------- 129 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA----------------------------------- 129 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE-----------------------------------
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee-----------------------------------
Confidence 346766544 455554 56888899999999999766432211
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~ 607 (927)
...|...|++++|+|+ .+|++++.||.|++||+.+++.+..+. |.
T Consensus 130 ---------------------------------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 176 (401)
T 4aez_A 130 ---------------------------------ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQ 176 (401)
T ss_dssp ---------------------------------ECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred ---------------------------------ecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCC
Confidence 1137889999999998 789999999999999999999988886 99
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEE-EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v-~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
..|.+++|+ +++|++++.|+.|++||++. ...+ ....+...|.+++|+|++++|++++.|+.|++||+.++....
T Consensus 177 ~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 253 (401)
T 4aez_A 177 ARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF 253 (401)
T ss_dssp SCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEE
T ss_pred CceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccE
Confidence 999999995 47999999999999999984 4433 456678899999999999999999999999999999887765
Q ss_pred ecccccccccccCCCCCeEEEEEcCCCCcEEEEEE--CCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEE-
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS--ADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSAS- 762 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs--~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs- 762 (927)
.+ ..|...|.+++|+|++..++++++ .|+.|++||.......... .+...+.+++|+|++++|++++
T Consensus 254 ~~---------~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g 323 (401)
T 4aez_A 254 TK---------TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTSLIWSPHSKEIMSTHG 323 (401)
T ss_dssp EE---------CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEECSSSSEEEEEEC
T ss_pred Ee---------cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE-eCCCcEEEEEECCCCCeEEEEee
Confidence 54 378889999999998887788776 7999999997654333222 3556799999999999999954
Q ss_pred -CCCcEEEEECCC
Q 002407 763 -EDSYVYVWKYEA 774 (927)
Q Consensus 763 -~Dg~I~IWdl~s 774 (927)
.||.|+||++.+
T Consensus 324 ~~dg~i~v~~~~~ 336 (401)
T 4aez_A 324 FPDNNLSIWSYSS 336 (401)
T ss_dssp TTTCEEEEEEEET
T ss_pred cCCCcEEEEecCC
Confidence 899999999865
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-29 Score=292.13 Aligned_cols=260 Identities=15% Similarity=0.150 Sum_probs=204.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
.-...|.+|+|+|||++|||++.|++|+ |....+ .+ .+|...++.++|+|++ .++.+.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l-----~gh~~~v~~V~FsPdg-------~~~~~~----- 70 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DI-----NCNSKNLFHVKEFPLE-------FENKLD----- 70 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CC-----SSBGGGTEEEEEECCC-------CCCTTT-----
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---ee-----cCCCccEEEEEECCCC-------CcceEE-----
Confidence 4458899999999999999999999999 643332 22 4788999999999998 122221
Q ss_pred ccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCC----
Q 002407 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSD---- 608 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~---- 608 (927)
++...+..+..+ .|...|++++|+|+ .+|++++.||+|+|||... ++..+.|..
T Consensus 71 ------------------~~~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~ 129 (588)
T 2j04_A 71 ------------------FELAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSS 129 (588)
T ss_dssp ------------------TSCCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTT
T ss_pred ------------------EEeCCCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCcccc
Confidence 111111121122 45788999999999 6799999999999999654 666666554
Q ss_pred -ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE-------EEe-----ccCCCcEEEEEECCCCCEEEEEECCCeEEE
Q 002407 609 -YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-------VDW-----NDLHEMVTAACYTPDGQGALVGSYKGSCHL 675 (927)
Q Consensus 609 -~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~-------v~~-----~~~~~~V~sla~spdg~~l~tgs~Dg~I~I 675 (927)
.|.+++|+| ++++|++|+.||+|+|||+.++.+ +.. ..|...|.+++|+|+| +++++.|+.|++
T Consensus 130 ~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrl 206 (588)
T 2j04_A 130 RTYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFS 206 (588)
T ss_dssp TCEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEE
T ss_pred ccEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEE
Confidence 499999999 999999999999999999998853 333 4456799999999999 889999999999
Q ss_pred EECCCCeee---eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceE-EEEeecCCcceEEEEE
Q 002407 676 YNTSENKLQ---QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH-KFKGFRNTNSQISASL 751 (927)
Q Consensus 676 wDl~~~~~~---~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~-~~~~~~~~~~v~sv~f 751 (927)
||+.++... ..+. ..|...|.+++|+ +. .|++++ +++|++||...... .+. ..+...+..+.|
T Consensus 207 Wd~~~~~~~~~~~tL~--------~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~~~~~~~-~gh~~~V~~va~ 273 (588)
T 2j04_A 207 MTVSASSHQPVSRMIQ--------NASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNYSISSLK-TGSLENFHIIPL 273 (588)
T ss_dssp ECCCSSSSCCCEEEEE--------CCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTTEEEEEE-CSCCSCCCEEEE
T ss_pred EECCCCccccceeeec--------ccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCCeEEEEE-cCCCceEEEEEe
Confidence 999887742 1110 2677899999999 33 777776 69999999776555 444 257888999999
Q ss_pred --ecCCCEEEEEECCCcEEEEECC
Q 002407 752 --TANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 752 --spdg~~Lasgs~Dg~I~IWdl~ 773 (927)
+|++..|+++++||. ++|.++
T Consensus 274 ~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 274 NHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TTCSSCEEEEECSSCEE-EEEESS
T ss_pred eeCCCCCEEEEEcCCCC-EEEeec
Confidence 999999999999999 999987
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=261.45 Aligned_cols=207 Identities=17% Similarity=0.224 Sum_probs=169.4
Q ss_pred EEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC--cEEEEEe-cCCceEEEEEccC-CCCEEEEEECCCcEEEE
Q 002407 561 CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK--TCLKIFS-HSDYVTCIQFNPV-DDRYFISGSLDAKVRIW 635 (927)
Q Consensus 561 ~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~--~~~~~~~-h~~~V~~v~fsp~-dg~~L~sgs~Dg~I~IW 635 (927)
..+.+|.+.|++++|+|+ .+|++++.|++|+|||+... +++.++. |...|++++|+|. ++++|++|+.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 456789999999999998 78999999999999999743 5666665 9999999999862 48899999999999999
Q ss_pred eCCCCc---EEEeccCCCcEEEEEECCC--CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 636 SIPERQ---VVDWNDLHEMVTAACYTPD--GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 636 Dl~t~~---~v~~~~~~~~V~sla~spd--g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
|+.+++ +.....|...|.+++|+|+ +.+|++++.|+.|++||++++...... ....|...|++++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~-------~~~~h~~~v~~~~~~p 155 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI-------IIDAHAIGVNSASWAP 155 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE-------EEECCSSCEEEEEECC
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee-------eeecccCccceEeecC
Confidence 998863 2334557789999999997 899999999999999999876322111 1247889999999999
Q ss_pred CC------------CcEEEEEECCCcEEEEECCcce----EEEEeecCCcceEEEEEecCC---CEEEEEECCCcEEEEE
Q 002407 711 GS------------SSEVLVTSADSRIRVVDGIDLV----HKFKGFRNTNSQISASLTANG---RYVVSASEDSYVYVWK 771 (927)
Q Consensus 711 dg------------~~~Llsgs~Dg~I~VwD~~~~~----~~~~~~~~~~~v~sv~fspdg---~~Lasgs~Dg~I~IWd 771 (927)
+. ..+|++++.|++|+|||..... .......|...|.+++|+|++ .+|++++.|++|+||+
T Consensus 156 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp CC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 73 2489999999999999954311 222233467789999999985 8999999999999999
Q ss_pred CCC
Q 002407 772 YEA 774 (927)
Q Consensus 772 l~s 774 (927)
+++
T Consensus 236 ~~~ 238 (297)
T 2pm7_B 236 QDN 238 (297)
T ss_dssp ESS
T ss_pred eCC
Confidence 875
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-28 Score=265.96 Aligned_cols=298 Identities=14% Similarity=0.184 Sum_probs=232.5
Q ss_pred eeeeEeecCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEecCc-CcccceeecccccCccccEEEEccCCCCCeecccc
Q 002407 447 YKCQEIQAHNGSIWSIKFSLD---GRYLASAGEDCVIHVWQVVE-SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH 522 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vafSpd---G~~LaSgs~DgtVrVWdv~~-~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~ 522 (927)
...+.+.+|.+.|++|+|+|+ |++||+|+.||.|+||++.+ +...... ..+|...+..+.|+|++.+++++.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKA----QQMHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEE----EEECSSCEEEEEECTTSSEEEEEE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEE----eccccCCEEEEEECcCCCEEEEEc
Confidence 344567899999999999999 69999999999999999987 4333222 245778899999999999999998
Q ss_pred cCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEe--cCC-cEEEEEeCCCcEEEEeCCCCc
Q 002407 523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW--SKS-QHLLSSSMDKTVRLWHLSSKT 599 (927)
Q Consensus 523 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~--spd-~~L~Sgs~DgtV~lWDl~t~~ 599 (927)
.++.+ .+|++.......+.+|...|++++| +++ .+|++++.|++|++||+.+++
T Consensus 106 ~dg~v-----------------------~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 106 CDKTA-----------------------KMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp TTSEE-----------------------EEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred CCCcE-----------------------EEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence 88877 5666666666667889999999999 777 579999999999999999999
Q ss_pred EEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe---ccCCCcEEEEEECCCCCE----EEEEECCCe
Q 002407 600 CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW---NDLHEMVTAACYTPDGQG----ALVGSYKGS 672 (927)
Q Consensus 600 ~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~---~~~~~~V~sla~spdg~~----l~tgs~Dg~ 672 (927)
++..+.....+.++.+.+ ..+++++.++.+++|++........ ......+.++++.++... +++++.||.
T Consensus 163 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~ 239 (368)
T 3mmy_A 163 PMMVLQLPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR 239 (368)
T ss_dssp CSEEEECSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE
T ss_pred EEEEEecCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc
Confidence 999998777888888865 4788899999999999987654321 122345667776665544 999999999
Q ss_pred EEEEECCCCee---eeecccccc---cccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcce
Q 002407 673 CHLYNTSENKL---QQKSPINLQ---NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQ 746 (927)
Q Consensus 673 I~IwDl~~~~~---~~~~~i~~~---~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v 746 (927)
|++||+..... ...+..... ......|...|++++|+|++. +|++++.|+.|++||............+...+
T Consensus 240 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 318 (368)
T 3mmy_A 240 VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDARTKLKTSEQLDQPI 318 (368)
T ss_dssp EEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEECCCCSSCE
T ss_pred EEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCCCcEEEEecCCCCCc
Confidence 99999988632 222110000 000012223799999999886 79999999999999987665555555667889
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 747 ISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 747 ~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
.+++|+|+|++|++++.|+..+.|++-..
T Consensus 319 ~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 319 SACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp EEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred eEEEECCCCCeEEEEecccccccccccCC
Confidence 99999999999999999987666665543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=273.29 Aligned_cols=269 Identities=17% Similarity=0.370 Sum_probs=216.9
Q ss_pred eeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccce
Q 002407 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (927)
Q Consensus 414 ~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~ 493 (927)
+.+.......+++|..++.|++|+..+.+. .+.+.+|.+.|++++| ++++|++|+.||+|+|||+.+++.
T Consensus 136 v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~--- 205 (435)
T 1p22_A 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLEC-----KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM--- 205 (435)
T ss_dssp EEEEECCSSEEEEEESSSCEEEEESSSCCE-----EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE---
T ss_pred EEEEEECCCEEEEEeCCCeEEEEeCCCCeE-----EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE---
Confidence 445555667889999999999999876543 3567899999999999 788999999999999999876532
Q ss_pred eecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEE
Q 002407 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (927)
Q Consensus 494 l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l 573 (927)
+..+.+|...|.++
T Consensus 206 ------------------------------------------------------------------~~~~~~h~~~v~~l 219 (435)
T 1p22_A 206 ------------------------------------------------------------------LNTLIHHCEAVLHL 219 (435)
T ss_dssp ------------------------------------------------------------------EEEECCCCSCEEEE
T ss_pred ------------------------------------------------------------------EEEEcCCCCcEEEE
Confidence 33456799999999
Q ss_pred EecCCcEEEEEeCCCcEEEEeCCCCcEE---EEE-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cC
Q 002407 574 SWSKSQHLLSSSMDKTVRLWHLSSKTCL---KIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DL 648 (927)
Q Consensus 574 ~~spd~~L~Sgs~DgtV~lWDl~t~~~~---~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~ 648 (927)
+|++ +.|++++.|++|++||+.++..+ ..+ .|...|.+++| ++++|++|+.|+.|++||+.+++.+..+ .+
T Consensus 220 ~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 295 (435)
T 1p22_A 220 RFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH 295 (435)
T ss_dssp ECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC
Confidence 9975 68999999999999999987755 333 39999999999 5689999999999999999999887644 46
Q ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 649 ~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
...|.+++| ++.++++|+.||.|++||+.+++....+ ..|...|++++|. +. +|++++.||.|++|
T Consensus 296 ~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~---------~~h~~~v~~~~~~--~~-~l~sg~~dg~i~vw 361 (435)
T 1p22_A 296 KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL---------EGHEELVRCIRFD--NK-RIVSGAYDGKIKVW 361 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE---------CCCSSCEEEEECC--SS-EEEEEETTSCEEEE
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEE---------eCCcCcEEEEEec--CC-EEEEEeCCCcEEEE
Confidence 678999998 4789999999999999999998877664 3788999999993 33 89999999999999
Q ss_pred ECCcce---------EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 729 DGIDLV---------HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 729 D~~~~~---------~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
|..... .......+...|.+++| ++.+|++++.||.|+|||+.+....
T Consensus 362 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 362 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp EHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred ECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 943221 23333445677888988 7889999999999999999886543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-28 Score=299.78 Aligned_cols=255 Identities=20% Similarity=0.278 Sum_probs=207.2
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
+.+.+|.+.|++|+|+|+|++||+|+.||+|+||++..+.
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~---------------------------------------- 42 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------------------------------- 42 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE----------------------------------------
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC----------------------------------------
Confidence 4578999999999999999999999999999999975321
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCc--EEEEE
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKT--CLKIF 604 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~--~~~~~ 604 (927)
.+.+..+.+|.+.|++++|+++ .+|++++.||+|++||+.+++ .+..+
T Consensus 43 ---------------------------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~ 95 (753)
T 3jro_A 43 ---------------------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH 95 (753)
T ss_dssp ---------------------------EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred ---------------------------CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc
Confidence 0234467789999999999875 679999999999999999986 44444
Q ss_pred e-cCCceEEEEEccCC--CCEEEEEECCCcEEEEeCCCC---cEEEeccCCCcEEEEEECC-------------CCCEEE
Q 002407 605 S-HSDYVTCIQFNPVD--DRYFISGSLDAKVRIWSIPER---QVVDWNDLHEMVTAACYTP-------------DGQGAL 665 (927)
Q Consensus 605 ~-h~~~V~~v~fsp~d--g~~L~sgs~Dg~I~IWDl~t~---~~v~~~~~~~~V~sla~sp-------------dg~~l~ 665 (927)
. |...|++++|+| + +++|++|+.||.|++||+.++ .......+...|.+++|+| ++.+|+
T Consensus 96 ~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~ 174 (753)
T 3jro_A 96 AVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV 174 (753)
T ss_dssp CCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEE
T ss_pred cCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEE
Confidence 4 999999999999 7 899999999999999999887 3345567788999999999 589999
Q ss_pred EEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC--CcEEEEEECCCcEEEEECCcce-----EEEE
Q 002407 666 VGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS--SSEVLVTSADSRIRVVDGIDLV-----HKFK 738 (927)
Q Consensus 666 tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg--~~~Llsgs~Dg~I~VwD~~~~~-----~~~~ 738 (927)
+|+.||.|++||++++....... .....|...|++++|+|++ ..+|++++.|+.|++||..... ....
T Consensus 175 sgs~dg~I~iwd~~~~~~~~~~~-----~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 249 (753)
T 3jro_A 175 TGGADNLVKIWKYNSDAQTYVLE-----STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK 249 (753)
T ss_dssp EEETTSCEEEEEEETTTTEEEEE-----EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSS
T ss_pred EEECCCeEEEEeccCCcccceee-----eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEec
Confidence 99999999999998764322111 1124789999999999983 4489999999999999965421 2222
Q ss_pred eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 739 GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 739 ~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
...+...+.+++|+|+|++|++++.||.|+||++.....
T Consensus 250 ~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 250 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp SSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred cCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence 334567789999999999999999999999999986543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=271.21 Aligned_cols=325 Identities=14% Similarity=0.252 Sum_probs=219.8
Q ss_pred eeeecCCCCeEEEccCceEEEEeccCcccc------cceeeeeEeecCC------------CCEEEEEEcCCC--CEEEE
Q 002407 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDL------TALYKCQEIQAHN------------GSIWSIKFSLDG--RYLAS 473 (927)
Q Consensus 414 ~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l------~~l~~~q~L~gH~------------~~I~~vafSpdG--~~LaS 473 (927)
..+-.....++++|..++.|++|+....+. ........+.+|. +.|++|+|+|++ .+|++
T Consensus 33 ~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s 112 (447)
T 3dw8_B 33 TVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLL 112 (447)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEE
Confidence 333344456788999999999999876542 1223456788998 899999999998 89999
Q ss_pred EeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEe
Q 002407 474 AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVF 553 (927)
Q Consensus 474 gs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~ 553 (927)
++.|++|+||++.++......... ..+ ++...... .. ..+...... + .-+
T Consensus 113 ~s~d~~i~iw~~~~~~~~~~~~~~--~~~-----------~g~~~~~~-~~--------------~~~~~~~~~-~-~~~ 162 (447)
T 3dw8_B 113 STNDKTIKLWKISERDKRPEGYNL--KEE-----------DGRYRDPT-TV--------------TTLRVPVFR-P-MDL 162 (447)
T ss_dssp EECSSCEEEEEEEEEEEEEECCSC--C-------------------CC-CC--------------CSCCCCEEE-E-EEE
T ss_pred eCCCCeEEEEecccccCCcceecc--cCc-----------cccccCcc-cc--------------cceEecccc-c-hhe
Confidence 999999999999775533221100 000 00000000 00 000000000 0 001
Q ss_pred ecCCCceEEE-ccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCC-CCcEEEEE--------ecCCceEEEEEccCCC-C
Q 002407 554 ALSDKPICSF-QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS-SKTCLKIF--------SHSDYVTCIQFNPVDD-R 621 (927)
Q Consensus 554 ~~s~k~i~~l-~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~-t~~~~~~~--------~h~~~V~~v~fsp~dg-~ 621 (927)
.....+...+ .+|...|++++|+|+ .+|+++ .|++|++||+. .++.+..+ .|...|++++|+| ++ +
T Consensus 163 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~ 240 (447)
T 3dw8_B 163 MVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCN 240 (447)
T ss_dssp EEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTT
T ss_pred eeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCc
Confidence 1122333444 689999999999999 677777 89999999999 45555543 3889999999999 76 9
Q ss_pred EEEEEECCCcEEEEeCCCCcE----EE-eccCCC------------cEEEEEECCCCCEEEEEECCCeEEEEECCC-Cee
Q 002407 622 YFISGSLDAKVRIWSIPERQV----VD-WNDLHE------------MVTAACYTPDGQGALVGSYKGSCHLYNTSE-NKL 683 (927)
Q Consensus 622 ~L~sgs~Dg~I~IWDl~t~~~----v~-~~~~~~------------~V~sla~spdg~~l~tgs~Dg~I~IwDl~~-~~~ 683 (927)
+|++++.|+.|++||+++++. +. +..+.. .|.+++|+|++++|++++. +.|++||++. ++.
T Consensus 241 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~ 319 (447)
T 3dw8_B 241 TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRP 319 (447)
T ss_dssp EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSC
T ss_pred EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccc
Confidence 999999999999999998875 34 334433 8999999999999999999 9999999987 665
Q ss_pred eeeccccccccc------ccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceE-EEEee----------------
Q 002407 684 QQKSPINLQNKK------KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH-KFKGF---------------- 740 (927)
Q Consensus 684 ~~~~~i~~~~~~------~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~-~~~~~---------------- 740 (927)
...+........ .......+..++|+|++. +|++++.|+.|+|||...... .+..+
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (447)
T 3dw8_B 320 VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVC 398 (447)
T ss_dssp SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEE
T ss_pred cceeeccccccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCcccc
Confidence 544321100000 000001134589999987 789999999999999654322 22221
Q ss_pred ---------------cCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 741 ---------------RNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 741 ---------------~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
.....+..++|+|++++||+++.++ +++|.-+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 399 ASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 2234678899999999999998776 8888753
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-27 Score=260.11 Aligned_cols=284 Identities=15% Similarity=0.191 Sum_probs=219.2
Q ss_pred cCCCCeEEEccC---ceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEecCcCc-c
Q 002407 418 DDSQDVSFHGQE---RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD---GRYLASAGEDCVIHVWQVVESE-R 490 (927)
Q Consensus 418 ~d~~~~~~~g~~---~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpd---G~~LaSgs~DgtVrVWdv~~~~-~ 490 (927)
.++..++++|.. ++.|++|+...++..... ..+|...|.+++|+|+ |++|++|+.||.|++||+.+++ .
T Consensus 28 p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 103 (357)
T 3i2n_A 28 PCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR----EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMP 103 (357)
T ss_dssp TTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE----EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSC
T ss_pred CCCceEEEecCccCCCcEEEEEeCCCCccccee----eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCcc
Confidence 344456667766 899999998877654332 2479999999999998 7999999999999999999887 4
Q ss_pred cceeecccccCccccEEEE------ccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCC--CceEE
Q 002407 491 KGELLEKQEDGHLNMLLLA------NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD--KPICS 562 (927)
Q Consensus 491 ~~~l~~~~~~~~~~~v~~v------~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~--k~i~~ 562 (927)
...+ .++...+..+ ++++++..++++..++.+. +|++.. .++..
T Consensus 104 ~~~~-----~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~-----------------------vwd~~~~~~~~~~ 155 (357)
T 3i2n_A 104 VYSV-----KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK-----------------------VWDPRQKDDPVAN 155 (357)
T ss_dssp SEEE-----CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE-----------------------EECTTSCSSCSEE
T ss_pred EEEE-----EecccceEEEeeccccccCCCccEEEEEeCCCeEE-----------------------EEeCCCCCCccee
Confidence 4443 3566677777 6789999999998888774 344332 25666
Q ss_pred EccCCC----CEEEEE----ecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccC--CCCEEEEEECCCc
Q 002407 563 FQGHLD----DVLDLS----WSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPV--DDRYFISGSLDAK 631 (927)
Q Consensus 563 l~gH~~----~V~~l~----~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~--dg~~L~sgs~Dg~ 631 (927)
+..|.+ .|.+++ |+++ .+|++++.|+.|++||+.+++......|...|.+++|+|. ++.+|++++.|+.
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 235 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK 235 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE
T ss_pred ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe
Confidence 666555 899998 6777 7899999999999999999999888889999999999985 6789999999999
Q ss_pred EEEEeCCCCcEE------EeccCCCcEEEEEECCCCC-EEEEEECCCeEEEEECCCCeeeeecccc----------cccc
Q 002407 632 VRIWSIPERQVV------DWNDLHEMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENKLQQKSPIN----------LQNK 694 (927)
Q Consensus 632 I~IWDl~t~~~v------~~~~~~~~V~sla~spdg~-~l~tgs~Dg~I~IwDl~~~~~~~~~~i~----------~~~~ 694 (927)
|++||+++++.+ ....+...|++++|+|++. +|++++.||.|++||+..+......... ....
T Consensus 236 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (357)
T 3i2n_A 236 FHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ 315 (357)
T ss_dssp EEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred EEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceee
Confidence 999999875432 2236788999999999998 8999999999999999865432110000 0011
Q ss_pred cccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc
Q 002407 695 KKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL 733 (927)
Q Consensus 695 ~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~ 733 (927)
....|...|++++|+|++..++++++.|+.|+|||..++
T Consensus 316 ~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 316 NVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 124788999999999999854458999999999996543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-27 Score=256.12 Aligned_cols=217 Identities=17% Similarity=0.219 Sum_probs=175.6
Q ss_pred EEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC----cEEEEEe-cCCceEEEEEccC-CCCEEEEEECCCcEE
Q 002407 561 CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK----TCLKIFS-HSDYVTCIQFNPV-DDRYFISGSLDAKVR 633 (927)
Q Consensus 561 ~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~----~~~~~~~-h~~~V~~v~fsp~-dg~~L~sgs~Dg~I~ 633 (927)
..+.+|.+.|++++|+|+ .+|++++.|++|++||+.++ +.+..+. |...|++++|+|. ++++|++++.|+.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 356799999999999999 78999999999999999876 3555554 9999999999984 489999999999999
Q ss_pred EEeCCCC---------c-EEEeccCCCcEEEEEECCC--CCEEEEEECCCeEEEEECCCCeeeeecccccc----ccccc
Q 002407 634 IWSIPER---------Q-VVDWNDLHEMVTAACYTPD--GQGALVGSYKGSCHLYNTSENKLQQKSPINLQ----NKKKR 697 (927)
Q Consensus 634 IWDl~t~---------~-~v~~~~~~~~V~sla~spd--g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~----~~~~~ 697 (927)
+||+.++ + ......+...|.+++|+|+ +.+|++++.||.|++||+.+++....+..... .....
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999886 2 3345567789999999999 99999999999999999998775544322111 11123
Q ss_pred CCCCCeEEEEEcCC--CCcEEEEEECCCcEEEEECCcce--EEEEeecCCcceEEEEEecCC----CEEEEEECCCcEEE
Q 002407 698 SHQRKITGFQFAPG--SSSEVLVTSADSRIRVVDGIDLV--HKFKGFRNTNSQISASLTANG----RYVVSASEDSYVYV 769 (927)
Q Consensus 698 ~h~~~Vtsl~fspd--g~~~Llsgs~Dg~I~VwD~~~~~--~~~~~~~~~~~v~sv~fspdg----~~Lasgs~Dg~I~I 769 (927)
.+...+.+++|+|+ ...++++++.++.+.+|+..... .......+...|.+++|+|++ ++|++++.||.|+|
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 67788999999997 34489999999999888754332 233444567889999999998 89999999999999
Q ss_pred EECCCCCC
Q 002407 770 WKYEAESR 777 (927)
Q Consensus 770 Wdl~s~~~ 777 (927)
||+.....
T Consensus 245 wd~~~~~~ 252 (351)
T 3f3f_A 245 FKITEKLS 252 (351)
T ss_dssp EEEEECC-
T ss_pred EeCCCCcC
Confidence 99987543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-27 Score=269.65 Aligned_cols=257 Identities=21% Similarity=0.299 Sum_probs=209.0
Q ss_pred eEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 450 QEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpd-G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
..+.+|.+.|++|+|+|+ +.+||+++.||.|+||++.+...... +
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------------------~--------------- 167 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------------------P--------------- 167 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------------------T---------------
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------------------c---------------
Confidence 445689999999999997 78999999999999999865321100 0
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-c-EEEEEeCCCcEEEEeCCCCcE------
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTC------ 600 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~-~L~Sgs~DgtV~lWDl~t~~~------ 600 (927)
....+++..+.+|...|++|+|+|+ . +|++++.||+|++|++..+..
T Consensus 168 -------------------------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 222 (430)
T 2xyi_A 168 -------------------------SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID 222 (430)
T ss_dssp -------------------------TCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEE
T ss_pred -------------------------cccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceec
Confidence 0012455677899999999999998 4 899999999999999987321
Q ss_pred -EEEE-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC---cE-EEeccCCCcEEEEEECCCCC-EEEEEECCCeE
Q 002407 601 -LKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER---QV-VDWNDLHEMVTAACYTPDGQ-GALVGSYKGSC 673 (927)
Q Consensus 601 -~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~---~~-v~~~~~~~~V~sla~spdg~-~l~tgs~Dg~I 673 (927)
...+ .|...|.+++|+|.++.+|++++.|+.|++||++++ +. .....+...|++++|+|++. +|++|+.||.|
T Consensus 223 ~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v 302 (430)
T 2xyi_A 223 AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTV 302 (430)
T ss_dssp CSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeE
Confidence 2334 489999999999977889999999999999999976 33 33456778999999999987 68899999999
Q ss_pred EEEECCCC-eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--------------ceEEEE
Q 002407 674 HLYNTSEN-KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--------------LVHKFK 738 (927)
Q Consensus 674 ~IwDl~~~-~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--------------~~~~~~ 738 (927)
++||++.. ..+..+ ..|...|++++|+|++..+|++++.|+.|+|||... ....+.
T Consensus 303 ~vwd~~~~~~~~~~~---------~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 373 (430)
T 2xyi_A 303 ALWDLRNLKLKLHSF---------ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 373 (430)
T ss_dssp EEEETTCTTSCSEEE---------ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEE
T ss_pred EEEeCCCCCCCeEEe---------ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEE
Confidence 99999874 333332 368899999999999987899999999999999654 233344
Q ss_pred eecCCcceEEEEEecCCC-EEEEEECCCcEEEEECCC
Q 002407 739 GFRNTNSQISASLTANGR-YVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 739 ~~~~~~~v~sv~fspdg~-~Lasgs~Dg~I~IWdl~s 774 (927)
...+...|.+++|+|+++ +|++++.||.|+||++..
T Consensus 374 ~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 374 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred cCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 445677899999999999 999999999999999975
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=254.41 Aligned_cols=286 Identities=12% Similarity=0.099 Sum_probs=220.5
Q ss_pred EccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc----EEEEEecCCceEEEEEccCCCC-EEEEEECCCcEEEEe
Q 002407 563 FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT----CLKIFSHSDYVTCIQFNPVDDR-YFISGSLDAKVRIWS 636 (927)
Q Consensus 563 l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~----~~~~~~h~~~V~~v~fsp~dg~-~L~sgs~Dg~I~IWD 636 (927)
..+|.+.|++++|+|+ .+|++++.|+.|+||++.++. ......|...|++++|+| +++ +|++++.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEE
Confidence 4579999999999998 789999999999999999887 556667999999999999 899 999999999999999
Q ss_pred C-CCCcEEEecc--CCCcEEEEEECCCCCEEEEEECCCeEEEEECCC---------CeeeeecccccccccccCCCCCeE
Q 002407 637 I-PERQVVDWND--LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE---------NKLQQKSPINLQNKKKRSHQRKIT 704 (927)
Q Consensus 637 l-~t~~~v~~~~--~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~---------~~~~~~~~i~~~~~~~~~h~~~Vt 704 (927)
+ .+++...+.. +...|.+++|+| +.+|++++.|+.|++||+.+ ++.... ..+...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----------~~~~~~v~ 154 (342)
T 1yfq_A 86 LIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN----------TKVKNKIF 154 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS----------SSSCCCEE
T ss_pred eccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE----------EeeCCceE
Confidence 9 9988877777 889999999999 99999999999999999876 433322 24778999
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECCc---ceEEEEeecCCcceEEEEEec-CCCEEEEEECCCcEEEEECCCCC--Cc
Q 002407 705 GFQFAPGSSSEVLVTSADSRIRVVDGID---LVHKFKGFRNTNSQISASLTA-NGRYVVSASEDSYVYVWKYEAES--RP 778 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I~VwD~~~---~~~~~~~~~~~~~v~sv~fsp-dg~~Lasgs~Dg~I~IWdl~s~~--~~ 778 (927)
+++|+|++ +++++.|+.|++||... .........+...+.+++|+| ++++|++++.||.|+||+++... ..
T Consensus 155 ~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 155 TMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp EEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred EEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 99999874 89999999999999765 222333344567899999999 99999999999999999998751 10
Q ss_pred ccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEe
Q 002407 779 SRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSA 858 (927)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasa 858 (927)
... . ..+.. +.... ....+ ......++|+|++.+|+++
T Consensus 232 ~~~--~---~~~~~-~~~~~------------------------~~~~~------------~~~i~~~~~s~~~~~l~~~ 269 (342)
T 1yfq_A 232 SSK--R---FAFRC-HRLNL------------------------KDTNL------------AYPVNSIEFSPRHKFLYTA 269 (342)
T ss_dssp CTT--C---EEEEC-CCCCT------------------------TCCSS------------CCCEEEEEECTTTCCEEEE
T ss_pred ccc--c---eeeec-ccccc------------------------ccccc------------ceeEEEEEEcCCCCEEEEe
Confidence 000 0 00000 00000 00001 1223446799999999998
Q ss_pred ccccccCccccccCchhhcc---cccc-CCCceecccCCCCCcccCCCCCEEEEEcCCCc-EEEee
Q 002407 859 TNSYFFDRISATWPEEKLVL---TARN-RSPRTSLDISNGISSSISAWGMVIVTAGLRGE-IRAYQ 919 (927)
Q Consensus 859 s~~~~~d~~v~~W~~e~l~~---~~~~-~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~-IrvW~ 919 (927)
+ .|+.+.+|+...... ...| ..++.. ++ |+|++|++|+.||+ .+.|.
T Consensus 270 ~----~dg~i~vwd~~~~~~~~~~~~~h~~~v~~--------~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 270 G----SDGIISCWNLQTRKKIKNFAKFNEDSVVK--------IA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp E----TTSCEEEEETTTTEEEEECCCCSSSEEEE--------EE--ECSSEEEEEEECTHHHHCSS
T ss_pred c----CCceEEEEcCccHhHhhhhhcccCCCceE--------ec--CCCCeEEEEecCCccccccc
Confidence 7 788999999874322 2233 444443 34 89999999999999 55555
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-26 Score=245.09 Aligned_cols=262 Identities=19% Similarity=0.250 Sum_probs=217.1
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..++++..++.|++|+....+. .+.+..|.+.|.+++|+|++++|++++.|+.|++|++........+. ....
T Consensus 30 ~~l~s~~~dg~v~vw~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~--~~~~ 102 (313)
T 3odt_A 30 SKVASVSRDGTVRLWSKDDQWL-----GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLY--TLIG 102 (313)
T ss_dssp TEEEEEETTSEEEEEEESSSEE-----EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-C--EECC
T ss_pred CEEEEEEcCCcEEEEECCCCEE-----EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCccc--chhh
Confidence 4578889999999999765543 35567899999999999999999999999999999998754322211 1245
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC-C-c
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-S-Q 579 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp-d-~ 579 (927)
+...+..+.+ ++..++++..++.+ .+|+ ..+.+..+..|...|.++.|++ + .
T Consensus 103 ~~~~i~~~~~--~~~~l~~~~~d~~i-----------------------~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (313)
T 3odt_A 103 HQGNVCSLSF--QDGVVISGSWDKTA-----------------------KVWK-EGSLVYNLQAHNASVWDAKVVSFSEN 156 (313)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEE-----------------------EEEE-TTEEEEEEECCSSCEEEEEEEETTTT
T ss_pred cccCEEEEEe--cCCEEEEEeCCCCE-----------------------EEEc-CCcEEEecccCCCceeEEEEccCCCC
Confidence 6677888888 56678888777776 3444 5567788899999999999988 5 8
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEE
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAAC 656 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla 656 (927)
.|++++.|+.|++|| ..+.+..+. |...|.+++|+| ++. |++++.|+.|++||+++++.+..+ .+...|++++
T Consensus 157 ~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 232 (313)
T 3odt_A 157 KFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIK 232 (313)
T ss_dssp EEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEE
Confidence 899999999999999 445555555 899999999999 777 999999999999999998877644 4778999999
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc
Q 002407 657 YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID 732 (927)
Q Consensus 657 ~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~ 732 (927)
|+|++ .|++++.||.|++||+.+++....+. .|...|++++|+|++. +++++.|+.|++||...
T Consensus 233 ~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~---------~~~~~i~~~~~~~~~~--~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 233 LLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT---------LPAISIWSVDCMSNGD--IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp ECTTS-CEEEEETTSEEEEECTTTCCEEEEEE---------CSSSCEEEEEECTTSC--EEEEETTSCEEEEESCG
T ss_pred EecCC-CEEEEecCCEEEEEECCCCceeEEEe---------ccCceEEEEEEccCCC--EEEEeCCCcEEEEeCCC
Confidence 99999 58999999999999999998776653 6778999999999986 77899999999999654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-27 Score=259.12 Aligned_cols=208 Identities=17% Similarity=0.228 Sum_probs=164.6
Q ss_pred EEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc--EEEEEe-cCCceEEEEEcc-CCCCEEEEEECCCcEEEEe
Q 002407 562 SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT--CLKIFS-HSDYVTCIQFNP-VDDRYFISGSLDAKVRIWS 636 (927)
Q Consensus 562 ~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~--~~~~~~-h~~~V~~v~fsp-~dg~~L~sgs~Dg~I~IWD 636 (927)
.+.+|.+.|++++|+|+ .+|++++.|++|+|||+.++. ++..+. |...|++++|+| .++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 45689999999999998 789999999999999998875 345555 999999999975 2488999999999999999
Q ss_pred CCCCc--EE-EeccCCCcEEEEEECCC--CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 637 IPERQ--VV-DWNDLHEMVTAACYTPD--GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 637 l~t~~--~v-~~~~~~~~V~sla~spd--g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
+.+++ .+ ....|...|.+++|+|+ +.+|++|+.|+.|++||+......... .....|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~------~~~~~h~~~v~~~~~~~~ 161 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK------KINNAHTIGCNAVSWAPA 161 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC------CBTTSSSSCBCCCEECCC
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee------eeeccccCCcceEEEccc
Confidence 98863 33 34567789999999998 889999999999999999875322111 112478889999999997
Q ss_pred C----------------CcEEEEEECCCcEEEEECCcc---eEEEEeecCCcceEEEEEecCC----CEEEEEECCCcEE
Q 002407 712 S----------------SSEVLVTSADSRIRVVDGIDL---VHKFKGFRNTNSQISASLTANG----RYVVSASEDSYVY 768 (927)
Q Consensus 712 g----------------~~~Llsgs~Dg~I~VwD~~~~---~~~~~~~~~~~~v~sv~fspdg----~~Lasgs~Dg~I~ 768 (927)
. ..+|++++.|+.|+|||.... ........|...|.+++|+|++ .+|++++.|++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~ 241 (316)
T 3bg1_A 162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF 241 (316)
T ss_dssp CCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred cCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence 3 137999999999999996432 2233334467789999999987 8999999999999
Q ss_pred EEECCCC
Q 002407 769 VWKYEAE 775 (927)
Q Consensus 769 IWdl~s~ 775 (927)
||++.+.
T Consensus 242 iw~~~~~ 248 (316)
T 3bg1_A 242 IWTCDDA 248 (316)
T ss_dssp EEECSST
T ss_pred EEEccCc
Confidence 9998763
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-25 Score=248.25 Aligned_cols=267 Identities=13% Similarity=0.130 Sum_probs=213.2
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~L-aSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
+++++..++.|++|+..++++. +.+.+|. .+.+++|+|+|++| ++++.|+.|++||+.+++....
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~-----~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~-------- 69 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVT-----ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-------- 69 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEE-----EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE--------
T ss_pred EEEEcCCCCEEEEEECCCCeEE-----EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE--------
Confidence 4677888999999998766543 4456665 48999999999987 6777999999999876643222
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~ 580 (927)
+..| ..+.+++|+|+ .+
T Consensus 70 -------------------------------------------------------------~~~~-~~v~~~~~spdg~~ 87 (391)
T 1l0q_A 70 -------------------------------------------------------------VPAG-SSPQGVAVSPDGKQ 87 (391)
T ss_dssp -------------------------------------------------------------EECS-SSEEEEEECTTSSE
T ss_pred -------------------------------------------------------------EECC-CCccceEECCCCCE
Confidence 1222 37899999998 55
Q ss_pred EE-EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEE-EEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEEC
Q 002407 581 LL-SSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYF-ISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYT 658 (927)
Q Consensus 581 L~-Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L-~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~s 658 (927)
|+ +++.++.|++||+.+++.+..+.+...+.+++|+| ++++| ++++.++.|++||+.+++.+.....+..+..++|+
T Consensus 88 l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 166 (391)
T 1l0q_A 88 VYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVT 166 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEEC
T ss_pred EEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEEC
Confidence 64 55567999999999999999988888899999999 88876 68888999999999999988888778889999999
Q ss_pred CCCCEE-EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE---CCCcEEEEECCcce
Q 002407 659 PDGQGA-LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS---ADSRIRVVDGIDLV 734 (927)
Q Consensus 659 pdg~~l-~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs---~Dg~I~VwD~~~~~ 734 (927)
|++++| ++++.++.|++||+.+++..... .+...+.+++|+|++. +|++++ .++.|++||.....
T Consensus 167 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~----------~~~~~~~~~~~~~~g~-~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 167 PDGTKVYVANFDSMSISVIDTVTNSVIDTV----------KVEAAPSGIAVNPEGT-KAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEE----------ECSSEEEEEEECTTSS-EEEEEEECSSCCEEEEEETTTTE
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEE----------ecCCCccceEECCCCC-EEEEEecCcCCCcEEEEECCCCe
Confidence 999987 56678899999999998876553 3456789999999987 566655 78999999976543
Q ss_pred EEEEeecCCcceEEEEEecCCCEE-EEEECCCcEEEEECCCCCCc
Q 002407 735 HKFKGFRNTNSQISASLTANGRYV-VSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 735 ~~~~~~~~~~~v~sv~fspdg~~L-asgs~Dg~I~IWdl~s~~~~ 778 (927)
...... ....+.+++|+|++++| ++++.|+.|++||+.+++..
T Consensus 236 ~~~~~~-~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 236 ITARIP-VGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTIT 279 (391)
T ss_dssp EEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEEe-cCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEE
Confidence 332222 23457889999999987 56688999999999986543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-26 Score=254.42 Aligned_cols=211 Identities=18% Similarity=0.248 Sum_probs=174.3
Q ss_pred CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCC--CCcEEEEEe-cCCceEEEEEccCC--CCEEEEEECCCc
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS--SKTCLKIFS-HSDYVTCIQFNPVD--DRYFISGSLDAK 631 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~--t~~~~~~~~-h~~~V~~v~fsp~d--g~~L~sgs~Dg~ 631 (927)
+.+..+.+|.+.|++++|+|+ .+|++++.|+.|+|||+. +++.+..+. |...|++++|+| + +++|++++.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCE
Confidence 345678899999999999999 789999999999999998 555666665 999999999987 5 899999999999
Q ss_pred EEEEeCCCCc--EE-EeccCCCcEEEEEECCC--CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEE
Q 002407 632 VRIWSIPERQ--VV-DWNDLHEMVTAACYTPD--GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGF 706 (927)
Q Consensus 632 I~IWDl~t~~--~v-~~~~~~~~V~sla~spd--g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl 706 (927)
|++||+.+++ .+ ....+...|.+++|+|+ +.+|++++.|+.|++||+..........+ ..|...|+++
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-------~~~~~~v~~~ 153 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-------DAHAIGVNSA 153 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE-------ECCTTCEEEE
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe-------cCCCCceEEE
Confidence 9999999985 33 34557789999999999 99999999999999999998754333221 4788999999
Q ss_pred EEcCC------------CCcEEEEEECCCcEEEEECCcc----eEEEEeecCCcceEEEEEecC---CCEEEEEECCCcE
Q 002407 707 QFAPG------------SSSEVLVTSADSRIRVVDGIDL----VHKFKGFRNTNSQISASLTAN---GRYVVSASEDSYV 767 (927)
Q Consensus 707 ~fspd------------g~~~Llsgs~Dg~I~VwD~~~~----~~~~~~~~~~~~v~sv~fspd---g~~Lasgs~Dg~I 767 (927)
+|+|. ...+|++++.|+.|++||.... ........+...|.+++|+|+ +++|++++.||.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i 233 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233 (379)
T ss_dssp EECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred EEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEE
Confidence 99994 2348999999999999995321 122233346778999999999 8999999999999
Q ss_pred EEEECCCCC
Q 002407 768 YVWKYEAES 776 (927)
Q Consensus 768 ~IWdl~s~~ 776 (927)
+|||+.++.
T Consensus 234 ~iwd~~~~~ 242 (379)
T 3jrp_A 234 IIWTQDNEQ 242 (379)
T ss_dssp EEEEESSTT
T ss_pred EEEeCCCCC
Confidence 999998754
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-25 Score=256.02 Aligned_cols=280 Identities=19% Similarity=0.267 Sum_probs=215.0
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
.+|...|+|++| ++++|++|+.||+|+|||+.+++
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~------------------------------------------- 164 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE------------------------------------------- 164 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-------------------------------------------
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe-------------------------------------------
Confidence 467788999888 78999999999999999986543
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceE
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVT 611 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~ 611 (927)
.+..+.+|...|++++| ....|++|+.||+|++||+.+++++..+. |...|.
T Consensus 165 --------------------------~~~~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 217 (435)
T 1p22_A 165 --------------------------CKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL 217 (435)
T ss_dssp --------------------------EEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE
T ss_pred --------------------------EEEEEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEE
Confidence 23345689999999999 34789999999999999999999998887 999999
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEeCCCCcEE----EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 612 CIQFNPVDDRYFISGSLDAKVRIWSIPERQVV----DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 612 ~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v----~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
+++|++ .+|++|+.|+.|++||+.++..+ ....+...|.+++| ++++|++|+.||.|++||+.+++....+
T Consensus 218 ~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 292 (435)
T 1p22_A 218 HLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL 292 (435)
T ss_dssp EEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEE
Confidence 999964 59999999999999999887643 35567789999999 7889999999999999999998877664
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
..|...|.++.|.+ .++++++.|+.|++||............+...+.+++| ++.+|++|+.||.|
T Consensus 293 ---------~~~~~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i 358 (435)
T 1p22_A 293 ---------NGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKI 358 (435)
T ss_dssp ---------ECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCE
T ss_pred ---------cCCCCcEEEEEeCC---CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcE
Confidence 37888999999953 38999999999999997655444444456778888888 78999999999999
Q ss_pred EEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccC
Q 002407 768 YVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTAN 825 (927)
Q Consensus 768 ~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~ 825 (927)
+|||+.+...+............. .|...+ ..+.|++...+....++.+..|+...
T Consensus 359 ~vwd~~~~~~~~~~~~~~~~~~~~-~h~~~v-~~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 359 KVWDLVAALDPRAPAGTLCLRTLV-EHSGRV-FRLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEEEHHHHTSTTSCTTTTEEEEEC-CCSSCC-CCEEECSSCEEECCSSSEEEEEC---
T ss_pred EEEECCCCCCccccccchheeecc-CCCCCe-EEEEeCCCEEEEEeCCCEEEEEECCC
Confidence 999997755332211111111111 111111 23334555555555666666666544
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-26 Score=250.52 Aligned_cols=300 Identities=13% Similarity=0.201 Sum_probs=225.8
Q ss_pred CceEEEccCCCCEEEEEecCC----cEEEEEeCCCcEEEEeCCC-CcEE-EEEe-cCCceEEEEEccCCCCEEEEEECCC
Q 002407 558 KPICSFQGHLDDVLDLSWSKS----QHLLSSSMDKTVRLWHLSS-KTCL-KIFS-HSDYVTCIQFNPVDDRYFISGSLDA 630 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd----~~L~Sgs~DgtV~lWDl~t-~~~~-~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg 630 (927)
+.+..+.+|.+.|++++|+|+ .+|++++.|+.|+|||+.+ +..+ ..+. |...|++++|+| ++++|++++.|+
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg 108 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDK 108 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTS
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCCC
Confidence 566778899999999999998 5799999999999999997 5554 4444 999999999999 999999999999
Q ss_pred cEEEEeCCCCcEEEeccCCCcEEEEEE--CCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE
Q 002407 631 KVRIWSIPERQVVDWNDLHEMVTAACY--TPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 631 ~I~IWDl~t~~~v~~~~~~~~V~sla~--spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
.|++||+.+++.+....+...|.+++| +|++.+|++++.||.|++||+++++....+. ....+.++.+
T Consensus 109 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----------~~~~~~~~~~ 178 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ----------LPERCYCADV 178 (368)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE----------CSSCEEEEEE
T ss_pred cEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe----------cCCCceEEEe
Confidence 999999999999998889999999999 9999999999999999999999887766543 2346777777
Q ss_pred cCCCCcEEEEEECCCcEEEEECCcceEEEEee--cCCcceEEEEEecCCCE----EEEEECCCcEEEEECCCCCCccccc
Q 002407 709 APGSSSEVLVTSADSRIRVVDGIDLVHKFKGF--RNTNSQISASLTANGRY----VVSASEDSYVYVWKYEAESRPSRSK 782 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~--~~~~~v~sv~fspdg~~----Lasgs~Dg~I~IWdl~s~~~~~~~~ 782 (927)
.+. .+++++.++.+++|+.......+... ........+++.++... +++++.||.|+||++.........
T Consensus 179 ~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~- 254 (368)
T 3mmy_A 179 IYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN- 254 (368)
T ss_dssp ETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS-
T ss_pred cCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc-
Confidence 753 78999999999999976544433332 22344566666665554 999999999999999875321111
Q ss_pred ccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEecccc
Q 002407 783 SITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSY 862 (927)
Q Consensus 783 ~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~ 862 (927)
..+......... .....+ ......++|+|++.+|++++
T Consensus 255 -----~~~~~~~~~~~~----------------------~~~~~~------------~~~v~~~~~sp~~~~l~s~~--- 292 (368)
T 3mmy_A 255 -----FTFKCHRSNGTN----------------------TSAPQD------------IYAVNGIAFHPVHGTLATVG--- 292 (368)
T ss_dssp -----EEEECSEEC--------------------------CCCEE------------ECCEEEEEECTTTCCEEEEE---
T ss_pred -----eeeeeeeccccc----------------------cccccc------------ccceEEEEEecCCCEEEEEc---
Confidence 000000000000 000000 02234467999999999987
Q ss_pred ccCccccccCchhhcc---ccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeecCCC
Q 002407 863 FFDRISATWPEEKLVL---TARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNFGL 923 (927)
Q Consensus 863 ~~d~~v~~W~~e~l~~---~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~~gl 923 (927)
.|+.+.+|+...... ...|..++. +++|+|+|++|++|+.||..+.|+.|..
T Consensus 293 -~dg~i~iwd~~~~~~~~~~~~~~~~v~--------~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 293 -SDGRFSFWDKDARTKLKTSEQLDQPIS--------ACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp -TTSCEEEEETTTTEEEEECCCCSSCEE--------EEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred -cCCeEEEEECCCCcEEEEecCCCCCce--------EEEECCCCCeEEEEecccccccccccCC
Confidence 788999999874422 224444443 4799999999999999998888886654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-25 Score=252.37 Aligned_cols=309 Identities=12% Similarity=0.068 Sum_probs=240.6
Q ss_pred EccCce--EEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCcc
Q 002407 426 HGQERV--RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (927)
Q Consensus 426 ~g~~~~--~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~ 503 (927)
.+..++ +|..++...+.+ ...+.+..|. .+.+++|+|++.++++++.|+.|++||+.+++....+......++.
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~---~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 169 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITH---RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL 169 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSE---EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred cccCCCceEEEEECCCCCcc---eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC
Confidence 344555 556665543322 2334455554 4669999998888888889999999999988766543322334677
Q ss_pred ccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecCC-cEE
Q 002407 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHL 581 (927)
Q Consensus 504 ~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~spd-~~L 581 (927)
..+..+.+++++.+++++..++.+ .+|++. .+.+..+..|...+.+++|+|+ ..+
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~d~~v-----------------------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 226 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQANAV-----------------------HVFDLKTLAYKATVDLTGKWSKILLYDPIRDLV 226 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGGGTEE-----------------------EEEETTTCCEEEEEECSSSSEEEEEEETTTTEE
T ss_pred CceeEEEEcCCCEEEEEECCCCEE-----------------------EEEECCCceEEEEEcCCCCCeeEEEEcCCCCEE
Confidence 788899999999999888777766 344443 4667778889999999999998 556
Q ss_pred -EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEE--------CCCcEEEEeCCCCcEEEeccCCCcE
Q 002407 582 -LSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS--------LDAKVRIWSIPERQVVDWNDLHEMV 652 (927)
Q Consensus 582 -~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs--------~Dg~I~IWDl~t~~~v~~~~~~~~V 652 (927)
++++.|+.|++||+.+++.+..+.+...+.+++|+| ++++|++++ .|+.|++||+.+++.+....+...+
T Consensus 227 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 305 (433)
T 3bws_A 227 YCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNK 305 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECE
T ss_pred EEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCc
Confidence 455589999999999999998888777899999999 898998888 5889999999999988877777789
Q ss_pred EEEEECCCCCEE-EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC----------
Q 002407 653 TAACYTPDGQGA-LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA---------- 721 (927)
Q Consensus 653 ~sla~spdg~~l-~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~---------- 721 (927)
..++|+|+++.+ ++++.++.|++||+.+++....+ .+...+.+++|+|++. .|++++.
T Consensus 306 ~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~----------~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~ 374 (433)
T 3bws_A 306 RHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI----------PVFDKPNTIALSPDGK-YLYVSCRGPNHPTEGYL 374 (433)
T ss_dssp EEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE----------ECSSSEEEEEECTTSS-EEEEEECCCCCTTTCTT
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe----------cCCCCCCeEEEcCCCC-EEEEEecCCCccccccc
Confidence 999999999765 55688999999999988876553 3556799999999987 5666655
Q ss_pred -----CCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEEC-CCcEEEEECCC
Q 002407 722 -----DSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASE-DSYVYVWKYEA 774 (927)
Q Consensus 722 -----Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~-Dg~I~IWdl~s 774 (927)
||.|++||........... ....+..++|+|+|++|++++. |+.|+||+++.
T Consensus 375 ~~g~~dg~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 375 KKGLVLGKVYVIDTTTDTVKEFWE-AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SCCSSCCEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cccccceEEEEEECCCCcEEEEec-CCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 5799999975543332222 2456899999999999998875 99999999864
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-26 Score=257.49 Aligned_cols=206 Identities=15% Similarity=0.248 Sum_probs=172.6
Q ss_pred EEccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEeCCCC-------cEEEEEe-cCCceEEEEEccCCC-CEEEEEECCC
Q 002407 562 SFQGHLDDVLDLSWSK-S-QHLLSSSMDKTVRLWHLSSK-------TCLKIFS-HSDYVTCIQFNPVDD-RYFISGSLDA 630 (927)
Q Consensus 562 ~l~gH~~~V~~l~~sp-d-~~L~Sgs~DgtV~lWDl~t~-------~~~~~~~-h~~~V~~v~fsp~dg-~~L~sgs~Dg 630 (927)
.+.+|.+.|++++|+| + .+|++++.|++|+|||+.++ +++..+. |...|++++|+| ++ ++|++++.|+
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg 154 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDN 154 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTS
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCC
Confidence 4568999999999999 6 78999999999999999987 5566665 999999999999 65 7999999999
Q ss_pred cEEEEeCCCCcEEEec---cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCC-eEEE
Q 002407 631 KVRIWSIPERQVVDWN---DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK-ITGF 706 (927)
Q Consensus 631 ~I~IWDl~t~~~v~~~---~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~-Vtsl 706 (927)
.|++||+.+++.+..+ .+...|.+++|+|++++|++++.|+.|++||+++++....+. ..|... +.++
T Consensus 155 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~ 226 (402)
T 2aq5_A 155 VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD--------RPHEGTRPVHA 226 (402)
T ss_dssp CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--------CSSCSSSCCEE
T ss_pred EEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec--------cCCCCCcceEE
Confidence 9999999999887654 577899999999999999999999999999999988776642 245554 8999
Q ss_pred EEcCCCCcEEEEE---ECCCcEEEEECCcceE--EEEeecCCcceEEEEEecCCCEEEEE-ECCCcEEEEECCCCCC
Q 002407 707 QFAPGSSSEVLVT---SADSRIRVVDGIDLVH--KFKGFRNTNSQISASLTANGRYVVSA-SEDSYVYVWKYEAESR 777 (927)
Q Consensus 707 ~fspdg~~~Llsg---s~Dg~I~VwD~~~~~~--~~~~~~~~~~v~sv~fspdg~~Lasg-s~Dg~I~IWdl~s~~~ 777 (927)
+|+|++. +|+++ +.|+.|++||...... ......+...+..++|+|++++|+++ +.|+.|++|++.++..
T Consensus 227 ~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 227 VFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp EECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred EEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 9999875 67777 6899999999765321 22223456679999999999999754 4799999999998764
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=251.39 Aligned_cols=280 Identities=10% Similarity=0.087 Sum_probs=203.0
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeec-ccccCCcee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLS-PKHLDNHLE 528 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la-~~~~~~~i~ 528 (927)
+++.+|.+.|++|+|+|||++||+|+.|+ ++||++.+.+...... . ..+..+.+.+....++ ++..++.+
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~d~~v- 83 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE---M----RHLSKVRMLHRTNYVAFVTGVKEVV- 83 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE---C----SCCCEEEECTTSSEEEEECSSTTEE-
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee---c----CCeEEEEEcCCCCEEEEEECCccEE-
Confidence 45688999999999999999999998775 7899988765443321 1 1244455556555543 34444444
Q ss_pred eecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCC-cEEEEEec
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSK-TCLKIFSH 606 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~-~~~~~~~h 606 (927)
.+|+. +++.+..+. |...|.++.|+++..+++ .|+.|++||+.++ +.+..+..
T Consensus 84 ----------------------~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 84 ----------------------HIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVS--YGDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp ----------------------EEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEE--ETTEEEEEESSTTCCBSSCCEE
T ss_pred ----------------------EEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEE--EcCEEEEEECCCCceeeEEecc
Confidence 45554 345566665 677999999998754443 4889999999988 66555544
Q ss_pred CCceEEEEEccCCCCEEEE--EECCCcEEEEeCCCCc-----------------EEEeccCCCcEEEEEECCCCCEEEEE
Q 002407 607 SDYVTCIQFNPVDDRYFIS--GSLDAKVRIWSIPERQ-----------------VVDWNDLHEMVTAACYTPDGQGALVG 667 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~s--gs~Dg~I~IWDl~t~~-----------------~v~~~~~~~~V~sla~spdg~~l~tg 667 (927)
....+++++ .++++ |+.||.|++||+.++. ......|...|++++|+|+|++|++|
T Consensus 139 --~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 139 --FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp --EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred --CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence 455566766 55655 5889999999999865 45567788999999999999999999
Q ss_pred ECCCe-EEEEECCCCeeeeecccccccccccC-CCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce----EE-----
Q 002407 668 SYKGS-CHLYNTSENKLQQKSPINLQNKKKRS-HQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV----HK----- 736 (927)
Q Consensus 668 s~Dg~-I~IwDl~~~~~~~~~~i~~~~~~~~~-h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~----~~----- 736 (927)
+.|++ |+|||+.+++.+..+. .+ |...|++++|+|++. +|++++.|++|+|||..... ..
T Consensus 214 s~d~~~v~iwd~~~~~~~~~~~--------~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 214 SQDGTIIRVFKTEDGVLVREFR--------RGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp ETTCSEEEEEETTTCCEEEEEE--------CTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred eCCCCEEEEEECCCCcEEEEEE--------cCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCCCccccccccee
Confidence 99998 9999999998877653 13 889999999999987 89999999999999954321 11
Q ss_pred -------------EEee-cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 737 -------------FKGF-RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 737 -------------~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
+... ........++|++++++|++++.||.+++|++..+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 0000 0112235689999999999999999999999976543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=261.72 Aligned_cols=255 Identities=15% Similarity=0.150 Sum_probs=172.3
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
..|.+.+....+++++.+||+|+.|++|+|||+.+++....
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~--------------------------------------- 126 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ--------------------------------------- 126 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEE---------------------------------------
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcccee---------------------------------------
Confidence 34556666666677888999999999999999876643221
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC--------C-cEEEEEeCCCcEEEEeCCCCcEEE-
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK--------S-QHLLSSSMDKTVRLWHLSSKTCLK- 602 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp--------d-~~L~Sgs~DgtV~lWDl~t~~~~~- 602 (927)
.++..+.||.+.|++++|+| + .+|++++.|++|+|||+.++.++.
T Consensus 127 -------------------------~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~ 181 (393)
T 4gq1_A 127 -------------------------HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA 181 (393)
T ss_dssp -------------------------EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred -------------------------eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence 11224568999999999987 4 679999999999999998776554
Q ss_pred EEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe--------------------------ccCCCcEEEEE
Q 002407 603 IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW--------------------------NDLHEMVTAAC 656 (927)
Q Consensus 603 ~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~--------------------------~~~~~~V~sla 656 (927)
.+.|...|.+++|+|.+..+|++++.|++|++||+.+++.... ..+...+.++.
T Consensus 182 ~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~ 261 (393)
T 4gq1_A 182 GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVR 261 (393)
T ss_dssp EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEE
T ss_pred ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeee
Confidence 5569999999999994446899999999999999988754321 23445677888
Q ss_pred EC-CCCCEEEEEECCCeEEEEECCCCeeeeeccccc----------ccccccCCCCCeEEEEEcC-CCCcEEEEEECCCc
Q 002407 657 YT-PDGQGALVGSYKGSCHLYNTSENKLQQKSPINL----------QNKKKRSHQRKITGFQFAP-GSSSEVLVTSADSR 724 (927)
Q Consensus 657 ~s-pdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~----------~~~~~~~h~~~Vtsl~fsp-dg~~~Llsgs~Dg~ 724 (927)
|+ |+++.|++++.|+.+++||+..++....+.... .......+...+ ...|+| .+..++++++.|+.
T Consensus 262 ~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sgs~Dg~ 340 (393)
T 4gq1_A 262 WIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL-GACPHPRYMDYFATAHSQHGL 340 (393)
T ss_dssp EETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS-CCEECSSCTTEEEEEETTTTE
T ss_pred eecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce-eEEEccCCCCEEEEEECCCCE
Confidence 86 799999999999999999998776544332100 000011122222 333444 34445666788999
Q ss_pred EEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 725 IRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 725 I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
|+|||............+...|.+++|+|||++||+++.+| +.+|++.
T Consensus 341 V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 341 IQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 99999654433333344567899999999999999998766 7777664
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=252.68 Aligned_cols=265 Identities=15% Similarity=0.125 Sum_probs=198.3
Q ss_pred ceEEEEeccCcccccc---e--eeeeEeecCCCCEEEEEEcCCCCEEEEE-----------eCCCcEEEEecCcCcccce
Q 002407 430 RVRVRQYGKSCKDLTA---L--YKCQEIQAHNGSIWSIKFSLDGRYLASA-----------GEDCVIHVWQVVESERKGE 493 (927)
Q Consensus 430 ~~~V~i~~~~s~~l~~---l--~~~q~L~gH~~~I~~vafSpdG~~LaSg-----------s~DgtVrVWdv~~~~~~~~ 493 (927)
+.+|++|+...+.... + .....|.+|...|.+++++ ++++++| +.|+.|++|++........
T Consensus 42 ~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~ 119 (365)
T 4h5i_A 42 PNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLE 119 (365)
T ss_dssp CEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEE
T ss_pred CCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEE
Confidence 4479999876544321 1 1223577899999988775 4566665 4578899999876543332
Q ss_pred eec----ccccCccccEEEEccCCCCCeecc--cccCCceeeecccccccccccccCcccccceEeecCC-CceEEEccC
Q 002407 494 LLE----KQEDGHLNMLLLANGSPEPTSLSP--KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGH 566 (927)
Q Consensus 494 l~~----~~~~~~~~~v~~v~~spd~~~la~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH 566 (927)
+.. .....+...+..++|+||+.+++. +..++.+ ++|+... +++..+ .|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i-----------------------~iwd~~~~~~~~~~-~~ 175 (365)
T 4h5i_A 120 FLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIM-----------------------RIIDPSDLTEKFEI-ET 175 (365)
T ss_dssp EEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEE-----------------------EEEETTTTEEEEEE-EC
T ss_pred EeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEE-----------------------EEeECCCCcEEEEe-CC
Confidence 221 112233455788999999998764 4455655 4455433 444455 48
Q ss_pred CCCEEEEEecCCc-EEEEEeCCCcEEEEeCCCCcEEEEE---ecCCceEEEEEccCCCCEEEEEECCC----cEEEEeCC
Q 002407 567 LDDVLDLSWSKSQ-HLLSSSMDKTVRLWHLSSKTCLKIF---SHSDYVTCIQFNPVDDRYFISGSLDA----KVRIWSIP 638 (927)
Q Consensus 567 ~~~V~~l~~spd~-~L~Sgs~DgtV~lWDl~t~~~~~~~---~h~~~V~~v~fsp~dg~~L~sgs~Dg----~I~IWDl~ 638 (927)
...|.+++|+|++ +|++++ ++.+++|+..+++.+... .|...|.+++|+| ++.++++++.|+ .+++|++.
T Consensus 176 ~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~ 253 (365)
T 4h5i_A 176 RGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIK 253 (365)
T ss_dssp SSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEE
T ss_pred CCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccc
Confidence 8899999999995 555555 666778887777766443 2888999999999 999999999887 58889987
Q ss_pred CCcE-----EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 639 ERQV-----VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 639 t~~~-----v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
.... .....+...|++++|+|+|++|++|+.|++|+|||+.+++++..+. .+|...|++++|+|++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~--------~gH~~~V~~v~fSpdg~ 325 (365)
T 4h5i_A 254 SGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK--------QAHSFAITEVTISPDST 325 (365)
T ss_dssp TTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET--------TSSSSCEEEEEECTTSC
T ss_pred cceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec--------CcccCCEEEEEECCCCC
Confidence 6643 2345667899999999999999999999999999999998876642 48999999999999987
Q ss_pred cEEEEEECCCcEEEEECC
Q 002407 714 SEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 714 ~~Llsgs~Dg~I~VwD~~ 731 (927)
+|++++.|++|+|||..
T Consensus 326 -~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 326 -YVASVSAANTIHIIKLP 342 (365)
T ss_dssp -EEEEEETTSEEEEEECC
T ss_pred -EEEEEeCCCeEEEEEcC
Confidence 89999999999999953
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=250.33 Aligned_cols=269 Identities=6% Similarity=0.003 Sum_probs=202.6
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..+++|..++.|++|+..+++....+ . ...|.++.|+|+ |++++.|++|++|+......
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~-----~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~----------- 107 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDSKTITTI-----T--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQIT----------- 107 (343)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEEEE-----E--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEE-----------
T ss_pred CEEEEECCCCcEEEEECCCCcEEEEE-----e--cCCceeeeeCCc---eEEecCCCeEEEEEccCceE-----------
Confidence 45788999999999998776554322 2 567888899988 99999999999998754211
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecC-CCceEEE-ccCCCCEEEEEecC--
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSF-QGHLDDVLDLSWSK-- 577 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l-~gH~~~V~~l~~sp-- 577 (927)
+++.. .+.+..+ .+|.+.|.+++|+|
T Consensus 108 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 137 (343)
T 3lrv_A 108 --------------------------------------------------ILDSKTNKVLREIEVDSANEIIYMYGHNEV 137 (343)
T ss_dssp --------------------------------------------------EEETTTCCEEEEEECCCSSCEEEEECCC--
T ss_pred --------------------------------------------------EeecCCcceeEEeecCCCCCEEEEEcCCCC
Confidence 11111 1112222 36788999999999
Q ss_pred C-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE--Eecc-CCCc
Q 002407 578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV--DWND-LHEM 651 (927)
Q Consensus 578 d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v--~~~~-~~~~ 651 (927)
+ .+|++++.|++|++||+.+++++..+. |...|++++|+| ++.+|++|+.|+.|++||+++++.+ .+.. |...
T Consensus 138 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~ 216 (343)
T 3lrv_A 138 NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK 216 (343)
T ss_dssp -CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSC
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCC
Confidence 7 789999999999999999999977764 566899999999 9999999999999999999998865 4444 6789
Q ss_pred EEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCe--EEEEEcCCCCcEEEEEEC-CCcEEEE
Q 002407 652 VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI--TGFQFAPGSSSEVLVTSA-DSRIRVV 728 (927)
Q Consensus 652 V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V--tsl~fspdg~~~Llsgs~-Dg~I~Vw 728 (927)
|++++|+|++.+|++++ ++.|++||+++.+....+... ..+...+ .+++|+|++. +|++++. |+.|+||
T Consensus 217 v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~-~l~~~s~~d~~i~v~ 288 (343)
T 3lrv_A 217 IKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTY------TIPEFKTGTVTYDIDDSGK-NMIAYSNESNSLTIY 288 (343)
T ss_dssp EEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCC------BC-----CCEEEEECTTSS-EEEEEETTTTEEEEE
T ss_pred EEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccc------ccccccccceEEEECCCCC-EEEEecCCCCcEEEE
Confidence 99999999999999999 559999999987655433210 1122223 4799999987 7888887 9999999
Q ss_pred ECCcceEEEEeecCCcceEEEEEec---CCCEEEEEECCCcEEEEECCC
Q 002407 729 DGIDLVHKFKGFRNTNSQISASLTA---NGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 729 D~~~~~~~~~~~~~~~~v~sv~fsp---dg~~Lasgs~Dg~I~IWdl~s 774 (927)
+.......+.. .++..++|.+ +.+.|++++.|+.+.++-...
T Consensus 289 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 289 KFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 85433222222 3466788888 889999999999999886543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=249.31 Aligned_cols=232 Identities=14% Similarity=0.158 Sum_probs=177.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccc
Q 002407 463 KFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLS 542 (927)
Q Consensus 463 afSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~ 542 (927)
.+.+++.+||+|+.||+|+|||+.+++.+..+.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----------------------------------------------- 75 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----------------------------------------------- 75 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----------------------------------------------
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----------------------------------------------
Confidence 455688899999999999999998776443321
Q ss_pred cCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCC---------CCcEEEEEe--cCCceE
Q 002407 543 LDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLS---------SKTCLKIFS--HSDYVT 611 (927)
Q Consensus 543 ~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~---------t~~~~~~~~--h~~~V~ 611 (927)
...|.++.|+|+ +++++.|++|++|+.. +++.+..+. |...|.
T Consensus 76 ------------------------~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 129 (343)
T 3lrv_A 76 ------------------------TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEII 129 (343)
T ss_dssp ------------------------EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEE
T ss_pred ------------------------cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEE
Confidence 123444556666 8888889998888655 666555554 668899
Q ss_pred EEEEcc-CCCCEEEEEECCCcEEEEeCCCCcEEEec--cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeee-eec
Q 002407 612 CIQFNP-VDDRYFISGSLDAKVRIWSIPERQVVDWN--DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ-QKS 687 (927)
Q Consensus 612 ~v~fsp-~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~--~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~-~~~ 687 (927)
+++|+| .++++|++++.|+.|++||+.+++.+... .+...+++++|+|++.+|++|+.||.|++||+++++.. ..+
T Consensus 130 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~ 209 (343)
T 3lrv_A 130 YMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRF 209 (343)
T ss_dssp EEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEEC
T ss_pred EEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEE
Confidence 999998 35789999999999999999999887654 33457999999999999999999999999999998765 333
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEE--EEeec-CCcce--EEEEEecCCCEEEEEE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHK--FKGFR-NTNSQ--ISASLTANGRYVVSAS 762 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~--~~~~~-~~~~v--~sv~fspdg~~Lasgs 762 (927)
. ..|...|++++|+|++. +|++++ ++.|++||.+..... +..+. +...+ .+++|+|+|++|++++
T Consensus 210 ~--------~~h~~~v~~l~fs~~g~-~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s 279 (343)
T 3lrv_A 210 P--------VDEEAKIKEVKFADNGY-WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYS 279 (343)
T ss_dssp C--------CCTTSCEEEEEECTTSS-EEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEE
T ss_pred e--------ccCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEec
Confidence 2 13889999999999986 788888 559999997543221 11100 11112 4699999999999999
Q ss_pred C-CCcEEEEECCCCCC
Q 002407 763 E-DSYVYVWKYEAESR 777 (927)
Q Consensus 763 ~-Dg~I~IWdl~s~~~ 777 (927)
. |+.|+||++.....
T Consensus 280 ~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 280 NESNSLTIYKFDKKTK 295 (343)
T ss_dssp TTTTEEEEEEECTTTC
T ss_pred CCCCcEEEEEEccccc
Confidence 8 99999999976543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=251.05 Aligned_cols=291 Identities=13% Similarity=0.082 Sum_probs=218.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc---ccceeecccc----------------------------------
Q 002407 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE---RKGELLEKQE---------------------------------- 499 (927)
Q Consensus 457 ~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~---~~~~l~~~~~---------------------------------- 499 (927)
.+|.+|+|+|+|++|+++ .++.|++||+.+++ .+..+.....
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999977766 47899999999888 4443321100
Q ss_pred ---------------cCccccEEEEccCCCCCee-cccccCCceeeecccccccccccccCcccccceEeecC---CCce
Q 002407 500 ---------------DGHLNMLLLANGSPEPTSL-SPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS---DKPI 560 (927)
Q Consensus 500 ---------------~~~~~~v~~v~~spd~~~l-a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s---~k~i 560 (927)
..+...|.+++|+|++..| +++..++.+ .+|++. ++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v-----------------------~iwd~~~~~~~~~ 140 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSL-----------------------LVFDVDKTSKNVL 140 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEE-----------------------EEEEECSSSSSCE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeE-----------------------EEEECcCCCCcee
Confidence 1233368999999999986 777777776 344433 4555
Q ss_pred EEEc--cCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEE----EE-ecCCceEEEEEccCC---CCEEEEEECC
Q 002407 561 CSFQ--GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK----IF-SHSDYVTCIQFNPVD---DRYFISGSLD 629 (927)
Q Consensus 561 ~~l~--gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~----~~-~h~~~V~~v~fsp~d---g~~L~sgs~D 629 (927)
..+. .|...|++++|+|+ .+|++++.++.|++|++.+++... .+ .|...|++++|+| + +++|++++.|
T Consensus 141 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d 219 (450)
T 2vdu_B 141 KLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRD 219 (450)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETT
T ss_pred eeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCC
Confidence 6665 67789999999998 789999999999999998876543 33 4999999999999 8 8899999999
Q ss_pred CcEEEEeCCCCcEEEe-c-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccc-------------
Q 002407 630 AKVRIWSIPERQVVDW-N-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK------------- 694 (927)
Q Consensus 630 g~I~IWDl~t~~~v~~-~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~------------- 694 (927)
+.|++||+.+++.+.. . .|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+.......
T Consensus 220 ~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (450)
T 2vdu_B 220 EHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRF 298 (450)
T ss_dssp SCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----
T ss_pred CcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccc
Confidence 9999999999887653 3 577899999999 99999999999999999999998776654221000
Q ss_pred ---cccCCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEEC--Cc---ceEEEEeecCCcceEEEEEecCCCEEEEEEC--
Q 002407 695 ---KKRSHQRKITGFQFAPGSSSEVLVTS-ADSRIRVVDG--ID---LVHKFKGFRNTNSQISASLTANGRYVVSASE-- 763 (927)
Q Consensus 695 ---~~~~h~~~Vtsl~fspdg~~~Llsgs-~Dg~I~VwD~--~~---~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~-- 763 (927)
........|.+++|+|++. +|++++ .++.|+||+. .. +........ ...+.+++|+|++.++++++.
T Consensus 299 ~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~-~~~v~~~~~~~~~~~v~~~~~~~ 376 (450)
T 2vdu_B 299 QNENNDIIEFAVSKIIKSKNLP-FVAFFVEATKCIIILEMSEKQKGDLALKQIITF-PYNVISLSAHNDEFQVTLDNKES 376 (450)
T ss_dssp ------CBCCCEEEEEECSSSS-EEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC-SSCEEEEEEETTEEEEEECCTTC
T ss_pred cccccccceEEEEEEEEeCCCC-EEEEEECCCCeEEEEEeccCCCCceeeccEecc-CCceEEEEecCCcEEEEEecccC
Confidence 0012346799999999887 677777 8999999997 22 122222222 377999999996544444343
Q ss_pred ----CCcEEEEECCCC
Q 002407 764 ----DSYVYVWKYEAE 775 (927)
Q Consensus 764 ----Dg~I~IWdl~s~ 775 (927)
+..|.||.+...
T Consensus 377 ~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 377 SGVQKNFAKFIEYNLN 392 (450)
T ss_dssp CSSCCCSEEEEEEETT
T ss_pred CCCCCcceEEEEEEcC
Confidence 455889887653
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-25 Score=256.45 Aligned_cols=303 Identities=10% Similarity=0.086 Sum_probs=221.8
Q ss_pred eeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccc
Q 002407 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG 492 (927)
Q Consensus 413 ~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~ 492 (927)
.++...|+ ..+++++.+++|+ +.. .. +.+.+|.+.|++|+|+|+| .++++.+|+..... ..
T Consensus 20 sv~~SpDG-~~iASas~D~TV~--d~~---~~-----~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~~ 80 (588)
T 2j04_A 20 NLTWARDG-TLYLTTFPDISIG--QPK---YA-----KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-LL 80 (588)
T ss_dssp CEEECTTS-CEEEECSSSEEEE--EEC---CC-----SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-SS
T ss_pred EEEECCCC-CEEEEEcCCceee--ccc---cc-----ceecCCCccEEEEEECCCC-------CcceEEEEeCCCce-Ee
Confidence 34444444 3457778888888 322 11 3457999999999999999 56666666543222 11
Q ss_pred eeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCC----
Q 002407 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD---- 568 (927)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~---- 568 (927)
. ..+...|..++|+|++..+++++.++.+. +|+... .+..+. |..
T Consensus 81 ~------~~~~~~V~~vawSPdG~~LAs~s~dg~V~-----------------------iwd~~~-~l~~l~-~~~~~~~ 129 (588)
T 2j04_A 81 N------SQPVCYPRVCKPSPIDDWMAVLSNNGNVS-----------------------VFKDNK-MLTNLD-SKGNLSS 129 (588)
T ss_dssp T------TSCSCCEEEEEECSSSSCEEEEETTSCEE-----------------------EEETTE-EEEECC-CSSCSTT
T ss_pred e------cCCCCcEEEEEECCCCCEEEEEeCCCcEE-----------------------EEeCCc-eeeecc-CCCcccc
Confidence 1 13367899999999999999999998874 343222 455556 665
Q ss_pred -CEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc-------EEEEEe-----cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 569 -DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT-------CLKIFS-----HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 569 -~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~-------~~~~~~-----h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
.|.+++|+|+ .+|++|+.||+|+|||+.++. .+.++. |...|.+++|+| ++ |++++.|++|++
T Consensus 130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrl 206 (588)
T 2j04_A 130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFS 206 (588)
T ss_dssp TCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEE
T ss_pred ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEE
Confidence 5999999999 789999999999999999885 356652 678999999999 77 888999999999
Q ss_pred EeCCCCcEE---Eec--cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE-
Q 002407 635 WSIPERQVV---DWN--DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF- 708 (927)
Q Consensus 635 WDl~t~~~v---~~~--~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f- 708 (927)
||+.++... ..+ .+...|.+++|+ |+.|++++ ++.|++||+.+++..... .+|...|..++|
T Consensus 207 Wd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~---------~gh~~~V~~va~~ 274 (588)
T 2j04_A 207 MTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK---------TGSLENFHIIPLN 274 (588)
T ss_dssp ECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE---------CSCCSCCCEEEET
T ss_pred EECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE---------cCCCceEEEEEee
Confidence 999887742 232 456789999999 68899887 699999999988874331 379999999999
Q ss_pred -cCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccccccccee
Q 002407 709 -APGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVT 787 (927)
Q Consensus 709 -spdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~ 787 (927)
+|++. .|++++.+|+ ++|... .++++||+..+++. |+++++|+...... ..... ...
T Consensus 275 ~s~d~~-~La~a~edG~-klw~~d----------------~~~~spd~~l~a~~--d~~v~lW~~~g~~l-~~~~~-~~~ 332 (588)
T 2j04_A 275 HEKEST-ILLMSNKTSY-KVLLED----------------ELHVTADNIIAPYL--EKKFKKWSTIWNEF-NNYET-TLV 332 (588)
T ss_dssp TCSSCE-EEEECSSCEE-EEEESS----------------SEEEECCCSSHHHH--HHHHHHTTTTTTSS-SSSCC-EEE
T ss_pred eCCCCC-EEEEEcCCCC-EEEeec----------------cEEECCCceEEEEc--CCEEEEEECCCCce-eeecc-ceE
Confidence 99875 7888999999 999854 15588888777765 88888888755432 22222 222
Q ss_pred eeeeeecCCCeEEEE
Q 002407 788 HSYEHFHCQDVSVAI 802 (927)
Q Consensus 788 ~~~~~~~~~~v~vav 802 (927)
.....|++++..+|+
T Consensus 333 I~~va~SPdG~~lA~ 347 (588)
T 2j04_A 333 IHGISLSPDGYSIAI 347 (588)
T ss_dssp EEEEEECTTSSEEEE
T ss_pred EEEEEECCCCCEEEE
Confidence 333455555544443
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=242.39 Aligned_cols=249 Identities=17% Similarity=0.276 Sum_probs=192.8
Q ss_pred CCCeEEEccCceEEEEeccCcccc-----cceeeeeEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCcCcccce
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDL-----TALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGE 493 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l-----~~l~~~q~L~gH~~~I~~vafSpdG~-~LaSgs~DgtVrVWdv~~~~~~~~ 493 (927)
...+++++..++.|++|+...... ........+.+|.+.|++|+|+|++. +|++|+.||.|+||++..+.....
T Consensus 140 ~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 219 (430)
T 2xyi_A 140 NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR 219 (430)
T ss_dssp EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG
T ss_pred CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc
Confidence 345778888899999999865210 01334567789999999999999998 999999999999999976432111
Q ss_pred eecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEE
Q 002407 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (927)
Q Consensus 494 l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l 573 (927)
.. .+...+.+|...|.++
T Consensus 220 ~~--------------------------------------------------------------~~~~~~~~h~~~v~~v 237 (430)
T 2xyi_A 220 VI--------------------------------------------------------------DAKNIFTGHTAVVEDV 237 (430)
T ss_dssp EE--------------------------------------------------------------ECSEEECCCSSCEEEE
T ss_pred ee--------------------------------------------------------------ccceeecCCCCCEeee
Confidence 00 1234566899999999
Q ss_pred EecCC--cEEEEEeCCCcEEEEeCCCC---cEEEEE-ecCCceEEEEEccCCCC-EEEEEECCCcEEEEeCCC-CcE-EE
Q 002407 574 SWSKS--QHLLSSSMDKTVRLWHLSSK---TCLKIF-SHSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPE-RQV-VD 644 (927)
Q Consensus 574 ~~spd--~~L~Sgs~DgtV~lWDl~t~---~~~~~~-~h~~~V~~v~fsp~dg~-~L~sgs~Dg~I~IWDl~t-~~~-v~ 644 (927)
+|+|+ ..|++++.|+.|++||+.++ +.+..+ .|...|++|+|+| ++. +|++|+.||.|++||+++ ... ..
T Consensus 238 ~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~~l~tg~~dg~v~vwd~~~~~~~~~~ 316 (430)
T 2xyi_A 238 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHS 316 (430)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECS-SCTTEEEEEETTSEEEEEETTCTTSCSEE
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCC-CCCCEEEEEeCCCeEEEEeCCCCCCCeEE
Confidence 99994 68899999999999999987 455555 4999999999999 554 799999999999999987 333 34
Q ss_pred eccCCCcEEEEEECCCCC-EEEEEECCCeEEEEECCCCeeeeeccc-----ccccccccCCCCCeEEEEEcCCCCcEEEE
Q 002407 645 WNDLHEMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENKLQQKSPI-----NLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~-~l~tgs~Dg~I~IwDl~~~~~~~~~~i-----~~~~~~~~~h~~~Vtsl~fspdg~~~Lls 718 (927)
+..|...|++++|+|+++ +|++++.|+.|+|||+..........- .........|...|++++|+|+++.+|++
T Consensus 317 ~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 396 (430)
T 2xyi_A 317 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS 396 (430)
T ss_dssp EECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE
T ss_pred eecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE
Confidence 556788999999999985 699999999999999987321110000 00001124788899999999998878999
Q ss_pred EECCCcEEEEECC
Q 002407 719 TSADSRIRVVDGI 731 (927)
Q Consensus 719 gs~Dg~I~VwD~~ 731 (927)
++.|+.|+||+..
T Consensus 397 ~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 397 VSEDNIMQVWQMA 409 (430)
T ss_dssp EETTSEEEEEEEC
T ss_pred EECCCCEEEeEcc
Confidence 9999999999954
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-22 Score=227.87 Aligned_cols=237 Identities=9% Similarity=0.079 Sum_probs=182.6
Q ss_pred CCEEEEEecCC-cEE-EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEE-EECCCcEEEEeCCCCcEEE
Q 002407 568 DDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFIS-GSLDAKVRIWSIPERQVVD 644 (927)
Q Consensus 568 ~~V~~l~~spd-~~L-~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~s-gs~Dg~I~IWDl~t~~~v~ 644 (927)
..+.+++|+|+ .+| ++++.|++|++||+.+++.+..+.+...+.+++|+| ++++|++ ++.++.|++||+.+++.+.
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~ 110 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAG 110 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECC-CCCEEEEEECCCCEEEEEECCCCeEEE
Confidence 34899999999 455 677799999999999999999998777999999999 8887754 5567999999999999988
Q ss_pred eccCCCcEEEEEECCCCCEE-EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC
Q 002407 645 WNDLHEMVTAACYTPDGQGA-LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l-~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg 723 (927)
...++..+.+++|+|++++| ++++.++.|++||+.+++....+. ....+.+++|+|++..++++++.++
T Consensus 111 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----------~~~~~~~~~~~~dg~~l~~~~~~~~ 180 (391)
T 1l0q_A 111 TVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS----------VGRSPKGIAVTPDGTKVYVANFDSM 180 (391)
T ss_dssp EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----------CCSSEEEEEECTTSSEEEEEETTTT
T ss_pred EEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe----------cCCCcceEEECCCCCEEEEEeCCCC
Confidence 88888899999999999987 677779999999999988776542 2356799999999985557778899
Q ss_pred cEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEE---CCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEE
Q 002407 724 RIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSAS---EDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSV 800 (927)
Q Consensus 724 ~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs---~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~v 800 (927)
.|++||.......... .+...+..++|+|++++|++++ .++.|++||+.++.......... ......+++++..+
T Consensus 181 ~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l 258 (391)
T 1l0q_A 181 SISVIDTVTNSVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKV 258 (391)
T ss_dssp EEEEEETTTTEEEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEE
T ss_pred EEEEEECCCCeEEEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEE
Confidence 9999997654433222 2355788999999999999888 68999999998865433332211 12334555555433
Q ss_pred --EEecCCceeEEeecCCc
Q 002407 801 --AIPWPGVGDTWGLQDTY 817 (927)
Q Consensus 801 --avs~~g~~~i~~~~d~~ 817 (927)
+...++.+.+|......
T Consensus 259 ~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 259 YVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp EEEETTTTEEEEEETTTTE
T ss_pred EEEcCCCCEEEEEECCCCc
Confidence 33445667777765443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=259.54 Aligned_cols=208 Identities=18% Similarity=0.243 Sum_probs=171.2
Q ss_pred EEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCC--CCcEEEEEe-cCCceEEEEEccCC--CCEEEEEECCCcEEE
Q 002407 561 CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS--SKTCLKIFS-HSDYVTCIQFNPVD--DRYFISGSLDAKVRI 634 (927)
Q Consensus 561 ~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~--t~~~~~~~~-h~~~V~~v~fsp~d--g~~L~sgs~Dg~I~I 634 (927)
..+.+|.+.|++++|+|+ .+|++|+.||+|+|||+. +++.+..+. |...|++++|+| + +++|++|+.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEE
Confidence 467899999999999998 779999999999999998 445666665 999999999998 6 899999999999999
Q ss_pred EeCCCCc---EEEeccCCCcEEEEEECCC--CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc
Q 002407 635 WSIPERQ---VVDWNDLHEMVTAACYTPD--GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 635 WDl~t~~---~v~~~~~~~~V~sla~spd--g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
||+.+++ ......+...|++++|+|+ +.++++|+.||.|++||+.++....... ...|...|++++|+
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~-------~~~~~~~v~~l~~~ 154 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-------IDAHAIGVNSASWA 154 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE-------EECCSSCEEEEEEC
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE-------eecCCCceEEEEec
Confidence 9999885 3345567789999999999 9999999999999999998874433222 14788999999999
Q ss_pred CC------------CCcEEEEEECCCcEEEEECCcc----eEEEEeecCCcceEEEEEecC---CCEEEEEECCCcEEEE
Q 002407 710 PG------------SSSEVLVTSADSRIRVVDGIDL----VHKFKGFRNTNSQISASLTAN---GRYVVSASEDSYVYVW 770 (927)
Q Consensus 710 pd------------g~~~Llsgs~Dg~I~VwD~~~~----~~~~~~~~~~~~v~sv~fspd---g~~Lasgs~Dg~I~IW 770 (927)
|. +..+|++++.||.|++||.... ........+...|.+++|+|+ +++|++++.||.|+||
T Consensus 155 p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw 234 (753)
T 3jro_A 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234 (753)
T ss_dssp CCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred CcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence 94 2348999999999999995432 222333446788999999999 9999999999999999
Q ss_pred ECCCCC
Q 002407 771 KYEAES 776 (927)
Q Consensus 771 dl~s~~ 776 (927)
|+.++.
T Consensus 235 d~~~~~ 240 (753)
T 3jro_A 235 TQDNEQ 240 (753)
T ss_dssp EESSSS
T ss_pred cCCCCC
Confidence 999864
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-23 Score=237.65 Aligned_cols=242 Identities=12% Similarity=0.071 Sum_probs=188.0
Q ss_pred ecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecC--cCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 453 QAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVV--ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~L-aSgs~DgtVrVWdv~--~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
.+|.+.|++|+|+|+|++| |+|+.||.|+||++. +++....+.. ..+...+.++.|+|++.+++++..++.+..
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~ 175 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR---FCFSKRPNAISIAEDDTTVIIADKFGDVYS 175 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE---EECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec---ccCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence 4677799999999999996 899999999999998 6666555431 234567889999999999999877776643
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---c-EEEEEeCCCcEEEEeCCCCcEEEEE-
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---Q-HLLSSSMDKTVRLWHLSSKTCLKIF- 604 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~-~L~Sgs~DgtV~lWDl~t~~~~~~~- 604 (927)
+....... ...++..+.+|...|++++|+|+ + +|++++.|++|++||+.+++++..+
T Consensus 176 ~~~~~~~~------------------~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 176 IDINSIPE------------------EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL 237 (450)
T ss_dssp EETTSCCC------------------SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC
T ss_pred EecCCccc------------------ccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee
Confidence 32111000 00033366789999999999997 6 6999999999999999999888774
Q ss_pred -ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc--------------------------CCCcEEEEEE
Q 002407 605 -SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND--------------------------LHEMVTAACY 657 (927)
Q Consensus 605 -~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~--------------------------~~~~V~sla~ 657 (927)
.|...|++++|+ ++++|++++.|+.|++||+.+++++..+. ....|..++|
T Consensus 238 ~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 238 FGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred cCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 399999999999 89999999999999999999998776443 2346899999
Q ss_pred CCCCCEEEEEE-CCCeEEEEEC--CCC---eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC-------CCc
Q 002407 658 TPDGQGALVGS-YKGSCHLYNT--SEN---KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA-------DSR 724 (927)
Q Consensus 658 spdg~~l~tgs-~Dg~I~IwDl--~~~---~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~-------Dg~ 724 (927)
+|++++|++++ .++.|+||++ ..+ .....+ ..+ ..|.+++|+|++ ++++.+. +..
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~---------~~~-~~v~~~~~~~~~--~~v~~~~~~~~~~~~~~ 383 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQII---------TFP-YNVISLSAHNDE--FQVTLDNKESSGVQKNF 383 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEE---------ECS-SCEEEEEEETTE--EEEEECCTTCCSSCCCS
T ss_pred eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEe---------ccC-CceEEEEecCCc--EEEEEecccCCCCCCcc
Confidence 99999999999 8999999999 444 333322 244 789999999943 4555433 445
Q ss_pred EEEEE
Q 002407 725 IRVVD 729 (927)
Q Consensus 725 I~VwD 729 (927)
|.+|.
T Consensus 384 i~v~~ 388 (450)
T 2vdu_B 384 AKFIE 388 (450)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77776
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-24 Score=242.97 Aligned_cols=228 Identities=14% Similarity=0.140 Sum_probs=171.1
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcC--------CCCEEEEEeCCCcEEEEecCcCcccce
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--------DGRYLASAGEDCVIHVWQVVESERKGE 493 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp--------dG~~LaSgs~DgtVrVWdv~~~~~~~~ 493 (927)
.+++++..+++|++|+...++.........+.+|++.|++|+|+| ||++|||||.|++|+|||+.++..
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~--- 178 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP--- 178 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE---
T ss_pred CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce---
Confidence 457889999999999998887776666778899999999999998 899999999999999999865432
Q ss_pred eecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEE
Q 002407 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (927)
Q Consensus 494 l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l 573 (927)
+..+.+|...|.++
T Consensus 179 ------------------------------------------------------------------~~~~~~~~~~v~~v 192 (393)
T 4gq1_A 179 ------------------------------------------------------------------ILAGYPLSSPGISV 192 (393)
T ss_dssp ------------------------------------------------------------------EEEEEECSSCEEEE
T ss_pred ------------------------------------------------------------------eeeecCCCCCcEEE
Confidence 22344688899999
Q ss_pred EecCC--cEEEEEeCCCcEEEEeCCCCcEEEEE--------------------------ecCCceEEEEEccCCCCEEEE
Q 002407 574 SWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIF--------------------------SHSDYVTCIQFNPVDDRYFIS 625 (927)
Q Consensus 574 ~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~--------------------------~h~~~V~~v~fsp~dg~~L~s 625 (927)
+|+|+ .+|++++.|++|++||+.+++..... .|...|.++.|.+.+++.|++
T Consensus 193 ~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s 272 (393)
T 4gq1_A 193 QFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILA 272 (393)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEE
T ss_pred EECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEE
Confidence 99998 46999999999999999987654322 266788999998449999999
Q ss_pred EECCCcEEEEeCCCCcEEEec-cCCCcE------------------EEEEECC--CCCEEEEEECCCeEEEEECCCCeee
Q 002407 626 GSLDAKVRIWSIPERQVVDWN-DLHEMV------------------TAACYTP--DGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 626 gs~Dg~I~IWDl~t~~~v~~~-~~~~~V------------------~sla~sp--dg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
++.|+.+++||+..++....+ .+...+ ....|+| ++.++++|+.||.|+|||+.+++..
T Consensus 273 ~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~ 352 (393)
T 4gq1_A 273 MCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN 352 (393)
T ss_dssp ECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC
T ss_pred EeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 999999999999876543321 111111 2233443 3446677888999999999988765
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
... ..|...|++++|+|+|+ +|++++.+| +.+|.
T Consensus 353 ~~~---------~~~~~~V~svafspdG~-~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 353 SIP---------IQLGMPIVDFCWHQDGS-HLAIATEGS-VLLTR 386 (393)
T ss_dssp EEE---------EECSSCEEEEEECTTSS-EEEEEESSE-EEEEE
T ss_pred EEe---------cCCCCcEEEEEEcCCCC-EEEEEeCCC-eEEEE
Confidence 543 36778999999999997 788887666 55554
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=231.50 Aligned_cols=271 Identities=12% Similarity=0.139 Sum_probs=217.0
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
...+++++..++.|++|+..+++.........+.+|.+.|++++|+|+++++++++.|+.|++||+.+++....+.
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~---- 208 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD---- 208 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE----
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc----
Confidence 3445677777888999998887766544444667999999999999999999999999999999999887666542
Q ss_pred cCccccEEEEccCCCCCeec-ccccCCceeeecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecC
Q 002407 500 DGHLNMLLLANGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSK 577 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~sp 577 (927)
.+...+..++++|++..++ ++..++.+ .+|++. ++.+..+.. ...+.+++|+|
T Consensus 209 -~~~~~~~~~~~~~~~~~l~~~~~~~~~i-----------------------~~~d~~~~~~~~~~~~-~~~~~~~~~~~ 263 (433)
T 3bws_A 209 -LTGKWSKILLYDPIRDLVYCSNWISEDI-----------------------SVIDRKTKLEIRKTDK-IGLPRGLLLSK 263 (433)
T ss_dssp -CSSSSEEEEEEETTTTEEEEEETTTTEE-----------------------EEEETTTTEEEEECCC-CSEEEEEEECT
T ss_pred -CCCCCeeEEEEcCCCCEEEEEecCCCcE-----------------------EEEECCCCcEEEEecC-CCCceEEEEcC
Confidence 4556788899999988774 44355555 334432 334444444 44599999999
Q ss_pred C-cEEEEEe--------CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCC-EEEEEECCCcEEEEeCCCCcEEEecc
Q 002407 578 S-QHLLSSS--------MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQVVDWND 647 (927)
Q Consensus 578 d-~~L~Sgs--------~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~-~L~sgs~Dg~I~IWDl~t~~~v~~~~ 647 (927)
+ ..|++++ .|+.|++||+.+++.+..+.|...+.+++|+| +++ ++++++.|+.|++||+.+++++....
T Consensus 264 ~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~ 342 (433)
T 3bws_A 264 DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLKEKKVQKSIP 342 (433)
T ss_dssp TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECS-STTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECC-CCCEEEEEecCCCEEEEEECCCCcEEEEec
Confidence 9 5788877 58899999999999988888888999999999 775 55677899999999999999888888
Q ss_pred CCCcEEEEEECCCCCEEEEEEC---------------CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC
Q 002407 648 LHEMVTAACYTPDGQGALVGSY---------------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l~tgs~---------------Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
+...+.+++|+|++++|++++. ||.|++||+.+++....+. ....+.+++|+|++
T Consensus 343 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~----------~~~~~~~~~~s~dg 412 (433)
T 3bws_A 343 VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE----------AGNQPTGLDVSPDN 412 (433)
T ss_dssp CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE----------CSSSEEEEEECTTS
T ss_pred CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec----------CCCCCceEEEcCCC
Confidence 8889999999999999998877 5799999999988776542 24578999999998
Q ss_pred CcEEEEEE-CCCcEEEEECC
Q 002407 713 SSEVLVTS-ADSRIRVVDGI 731 (927)
Q Consensus 713 ~~~Llsgs-~Dg~I~VwD~~ 731 (927)
. +|++++ .|+.|++|+..
T Consensus 413 ~-~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 413 R-YLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp C-EEEEEETTTTEEEEEEET
T ss_pred C-EEEEEECCCCeEEEEEec
Confidence 7 566665 59999999854
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-22 Score=253.30 Aligned_cols=345 Identities=10% Similarity=0.047 Sum_probs=225.5
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEecCcCcccceeecccccCccc
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED------CVIHVWQVVESERKGELLEKQEDGHLN 504 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~D------gtVrVWdv~~~~~~~~l~~~~~~~~~~ 504 (927)
+.|++|+...++. +.|.+|.+.|.+++|||||++||+++.+ ..|++|++.+++. ..+ ..+..
T Consensus 33 ~~l~~~~~~gg~~------~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~-~~l-----t~~~~ 100 (1045)
T 1k32_A 33 DDLWEHDLKSGST------RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI-KRI-----TYFSG 100 (1045)
T ss_dssp TEEEEEETTTCCE------EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE-EEC-----CCCCE
T ss_pred CcEEEEECCCCcE------EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe-EEc-----ccCCC
Confidence 4789998876653 4567899999999999999999988654 3799999987652 222 23444
Q ss_pred cE-------EEEccCCCCCeecccccC------Cceeeecc-cccccccccc-cCc------------------c-----
Q 002407 505 ML-------LLANGSPEPTSLSPKHLD------NHLEKKRR-GRSINRKSLS-LDH------------------M----- 546 (927)
Q Consensus 505 ~v-------~~v~~spd~~~la~~~~~------~~i~~~~~-~~~~~~~~~~-~~~------------------~----- 546 (927)
.+ ..++|+|++.++++...+ ..+..+.. .......... ... .
T Consensus 101 ~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~ 180 (1045)
T 1k32_A 101 KSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYR 180 (1045)
T ss_dssp EEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCC
T ss_pred cccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCcccccccc
Confidence 45 789999999866665433 12322221 1110000000 000 0
Q ss_pred -cccceEee-cCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCC--CcE----------------------
Q 002407 547 -VVPETVFA-LSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSS--KTC---------------------- 600 (927)
Q Consensus 547 -~~~~~v~~-~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t--~~~---------------------- 600 (927)
.....+|. ........+.+|...+.++.|+++..+++++.|++++||.+.. +..
T Consensus 181 g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la 260 (1045)
T 1k32_A 181 GGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRIL 260 (1045)
T ss_dssp STTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEE
T ss_pred CCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEE
Confidence 00001111 1113344456677777777776664455556666666665321 111
Q ss_pred ----------------EEEEe------------cCCceEEEEEc-cCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCC-
Q 002407 601 ----------------LKIFS------------HSDYVTCIQFN-PVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE- 650 (927)
Q Consensus 601 ----------------~~~~~------------h~~~V~~v~fs-p~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~- 650 (927)
+..+. |...+.+++|+ | ++++|++++ ++.|.+|++.+++......+..
T Consensus 261 ~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~ 338 (1045)
T 1k32_A 261 FSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRI 338 (1045)
T ss_dssp EEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEECSCCSCE
T ss_pred EEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEEccCCCcc
Confidence 11111 12257889999 8 888888877 7889999998888777666666
Q ss_pred cEEEEEECCCCCEEEEEECCCeEE-EEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 651 MVTAACYTPDGQGALVGSYKGSCH-LYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~Dg~I~-IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
.+..++|+ ||+.|+.++.++.+. +|++.++..... ..+...+..++|+|++. .|++++.++.|++||
T Consensus 339 ~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l----------~~~~~~~~~~~~SpDG~-~la~~~~~~~v~~~d 406 (1045)
T 1k32_A 339 RYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF----------EENLGNVFAMGVDRNGK-FAVVANDRFEIMTVD 406 (1045)
T ss_dssp EEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC----------CCCCCSEEEEEECTTSS-EEEEEETTSEEEEEE
T ss_pred eEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe----------cCCccceeeeEECCCCC-EEEEECCCCeEEEEE
Confidence 89999999 999999999888898 999987754322 25667899999999987 788999999999999
Q ss_pred CCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC----------cEEEEECCCCCCcccccccceeeeeeeecCCCeE
Q 002407 730 GIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS----------YVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVS 799 (927)
Q Consensus 730 ~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg----------~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~ 799 (927)
............+...+..++|+|||++|++++.++ .|++||+.++. ...............|.+++..
T Consensus 407 ~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~ 485 (1045)
T 1k32_A 407 LETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKN 485 (1045)
T ss_dssp TTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCE
T ss_pred CCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCE
Confidence 754433333324566678899999999999887654 89999998765 3222222222233456666554
Q ss_pred EEE
Q 002407 800 VAI 802 (927)
Q Consensus 800 vav 802 (927)
+++
T Consensus 486 l~~ 488 (1045)
T 1k32_A 486 LYY 488 (1045)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-22 Score=222.10 Aligned_cols=282 Identities=16% Similarity=0.137 Sum_probs=187.5
Q ss_pred EEEEEEcCCCC---EEEEEeCCCcEEEEecCcC---cccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 459 IWSIKFSLDGR---YLASAGEDCVIHVWQVVES---ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 459 I~~vafSpdG~---~LaSgs~DgtVrVWdv~~~---~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
+.+|-|-..|- .++++++ .+|++|+..+. +....+ ..+..+|..+.+.|+..-|+....++.-.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---- 111 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTW-----HFAEVPVLQIVPVPDVYNLVCVALGNLEI---- 111 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEE-----ECCSSCEEEECCCTTCCSCEEEEECSSSE----
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEE-----eccCceeEEEEEcCcccceeeeeeccccc----
Confidence 44555644433 6788885 58999999988 555554 46667888999999754443322221100
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeC---CCcEEEEeCC-CCcEEEEEe-cC
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSM---DKTVRLWHLS-SKTCLKIFS-HS 607 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~---DgtV~lWDl~-t~~~~~~~~-h~ 607 (927)
..+....++.+.. ..+....-.+|...|..+ ++++++.++. |++|++|++. .++.+..+. |.
T Consensus 112 -~~v~sla~spd~~---------~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~ 178 (356)
T 2w18_A 112 -REIRALFCSSDDE---------SEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP 178 (356)
T ss_dssp -EEEEEECC---------------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred -cceEEEEECCCcc---------ccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence 0011111111100 001222224566556555 5677776654 9999999994 477776655 88
Q ss_pred CceEEEEEccC--CCCEEEEEECCCcEEEEeCCCCcEEEecc-CC---CcEEEEEECCCCCEE------------EEEEC
Q 002407 608 DYVTCIQFNPV--DDRYFISGSLDAKVRIWSIPERQVVDWND-LH---EMVTAACYTPDGQGA------------LVGSY 669 (927)
Q Consensus 608 ~~V~~v~fsp~--dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-~~---~~V~sla~spdg~~l------------~tgs~ 669 (927)
..+..++|+|. ++.+|++++.|++|+|||+.+++++..+. ++ ..+.+++|+|+|+++ ++|+.
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence 88888888874 56899999999999999999999887664 32 367788999999887 55788
Q ss_pred CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecCCcce-
Q 002407 670 KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQ- 746 (927)
Q Consensus 670 Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v- 746 (927)
|++|++||..+++.+..+.+.++ .+|...+.+..++ +. ++++++.|++|+|||... .+..+.+| ...+
T Consensus 259 D~tIklWd~~tgk~l~v~~~~~p----~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tGk~l~tL~gH--~~~vv 329 (356)
T 2w18_A 259 VFQLIVINPKTTLSVGVMLYCLP----PGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLGQCTALLPPV--SDQHW 329 (356)
T ss_dssp CEEEEEEETTTTEEEEEEEECCC----TTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTCSEEEEECCC----CCC
T ss_pred CcEEEEEECCCCEEEEEEEeecc----CCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCCcEEEEecCC--CCCeE
Confidence 99999999999988765432211 2455555555554 33 789999999999999765 44555443 3333
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 747 ISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 747 ~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
..++|+|||++|++|+.|++|+|||+
T Consensus 330 s~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 330 SFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEECCCCCEEEEEECCCcEEEecC
Confidence 45899999999999999999999996
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-22 Score=225.69 Aligned_cols=242 Identities=10% Similarity=0.092 Sum_probs=172.9
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
..|...|.+++|+|++.+++++..++. .+|+...... .+..+...+..+++.++
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~~------------------------~iw~~~~~~~-~~~~~~~~~~~~~~~~~~ 70 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKSF------------------------EIYNVHPVAH-IMSQEMRHLSKVRMLHRT 70 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSEE------------------------EEEEETTEEE-EEEEECSCCCEEEECTTS
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCEE------------------------EEEecCCcce-eeeeecCCeEEEEEcCCC
Confidence 456788999999999999998866642 1222221111 11122224677777776
Q ss_pred cEE-EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC-cEEEeccCCCcEEEEE
Q 002407 579 QHL-LSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-QVVDWNDLHEMVTAAC 656 (927)
Q Consensus 579 ~~L-~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~-~~v~~~~~~~~V~sla 656 (927)
+.+ ++++.|++|+|||+.+++++..+.+...|.+++|++ + .++++ .|+.|++||+.++ +.+..+.. ....++
T Consensus 71 ~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~ 144 (355)
T 3vu4_A 71 NYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCE 144 (355)
T ss_dssp SEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEE
T ss_pred CEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEEecc--CCceEE
Confidence 444 678889999999999999999999999999999987 3 34444 4789999999987 54443333 445566
Q ss_pred ECCCCCEEEE--EECCCeEEEEECCCCeeeeeccccc------c-cccccCCCCCeEEEEEcCCCCcEEEEEECCCc-EE
Q 002407 657 YTPDGQGALV--GSYKGSCHLYNTSENKLQQKSPINL------Q-NKKKRSHQRKITGFQFAPGSSSEVLVTSADSR-IR 726 (927)
Q Consensus 657 ~spdg~~l~t--gs~Dg~I~IwDl~~~~~~~~~~i~~------~-~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~-I~ 726 (927)
+++ .++++ |+.+|.|++||+.++.......... + ......|...|++++|+|++. +|++++.|++ |+
T Consensus 145 ~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~~v~ 221 (355)
T 3vu4_A 145 FSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIR 221 (355)
T ss_dssp EET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEETTCSEEE
T ss_pred EEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeCCCCEEE
Confidence 777 56666 5889999999999765111000000 0 112358999999999999887 8999999998 99
Q ss_pred EEECCcceEEEEee-c-CCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 727 VVDGIDLVHKFKGF-R-NTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 727 VwD~~~~~~~~~~~-~-~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|||........... . +...|.+++|+|++++|++++.|+.|+|||+...
T Consensus 222 iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 222 VFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 99976544433333 2 6788999999999999999999999999999875
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-22 Score=220.67 Aligned_cols=212 Identities=12% Similarity=0.033 Sum_probs=156.6
Q ss_pred CCEEEEEEcCC----CCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 457 GSIWSIKFSLD----GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 457 ~~I~~vafSpd----G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
..|++|+|+|| ++++++++.+ ++||++.+++.+... ..++...|..++++|++.
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss----~~g~d~~V~~~~~s~dG~---------------- 169 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSS----GTLSDQQVEVMTFAEDGG---------------- 169 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEE----SSSTTCEEEEEEECTTSC----------------
T ss_pred cceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEec----ccCCCCcEEEEEECCCCc----------------
Confidence 46777777778 8888888744 888988665543331 234555666666665544
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC---C-cEEEEEeCCCcEEEEeCCCCcEEEEEe-c-
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK---S-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H- 606 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp---d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h- 606 (927)
.+..+.+|...+..++|++ + ..|++++.|++|+|||+.++++++++. |
T Consensus 170 --------------------------~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~ 223 (356)
T 2w18_A 170 --------------------------GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD 223 (356)
T ss_dssp --------------------------EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred --------------------------eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence 3445567888888999988 4 689999999999999999999999996 3
Q ss_pred --CCceEEEEEccCCCCEE------------EEEECCCcEEEEeCCCCcEEEec------cCCCcEEEEEECCCCCEEEE
Q 002407 607 --SDYVTCIQFNPVDDRYF------------ISGSLDAKVRIWSIPERQVVDWN------DLHEMVTAACYTPDGQGALV 666 (927)
Q Consensus 607 --~~~V~~v~fsp~dg~~L------------~sgs~Dg~I~IWDl~t~~~v~~~------~~~~~V~sla~spdg~~l~t 666 (927)
...+.+++|+| ++.++ ++|+.|++|++||..+++.+..+ .+...+.+..+ ++.++++
T Consensus 224 ~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lAS 300 (356)
T 2w18_A 224 SYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAA 300 (356)
T ss_dssp ---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEE
T ss_pred cceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEE
Confidence 34678889999 88876 56788999999999999876543 22333444443 3788999
Q ss_pred EECCCeEEEEECCCCeeeeecccccccccccCCCCCeE-EEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 667 GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT-GFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 667 gs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt-sl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
++.|++|+|||+.++++..++. +|...+. .++|+|+++ +|++|+.|++|+|||
T Consensus 301 gS~DgTIkIWDl~tGk~l~tL~---------gH~~~vvs~vafSPDG~-~LaSGS~D~TIklWd 354 (356)
T 2w18_A 301 ILTSGTIAIWDLLLGQCTALLP---------PVSDQHWSFVKWSGTDS-HLLAGQKDGNIFVYH 354 (356)
T ss_dssp EETTSCEEEEETTTCSEEEEEC---------CC--CCCCEEEECSSSS-EEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEec---------CCCCCeEEEEEECCCCC-EEEEEECCCcEEEec
Confidence 9999999999999999888753 6666554 689999987 899999999999998
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-21 Score=222.72 Aligned_cols=259 Identities=12% Similarity=0.076 Sum_probs=200.5
Q ss_pred ceEEEEecc--CcccccceeeeeEeecCCCCEEEEEEcC--------------CCCEEEEEeCC------CcEEEEecCc
Q 002407 430 RVRVRQYGK--SCKDLTALYKCQEIQAHNGSIWSIKFSL--------------DGRYLASAGED------CVIHVWQVVE 487 (927)
Q Consensus 430 ~~~V~i~~~--~s~~l~~l~~~q~L~gH~~~I~~vafSp--------------dG~~LaSgs~D------gtVrVWdv~~ 487 (927)
+.+|++|+. .+++ ....+.+.+|...+..+++++ .+..|+.++.+ +.|++||+..
T Consensus 92 ~~~i~lwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g 168 (415)
T 2hqs_A 92 NVAYQLVDTGGAPGT---VLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG 168 (415)
T ss_dssp EEEEEEEECSSSTTC---EEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS
T ss_pred EEEEEEEeCCCCCCC---EEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC
Confidence 348999998 6654 223356789999999888875 26677776654 7999999753
Q ss_pred CcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCC
Q 002407 488 SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL 567 (927)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~ 567 (927)
.. ...+.+|.
T Consensus 169 ~~----------------------------------------------------------------------~~~l~~~~ 178 (415)
T 2hqs_A 169 YN----------------------------------------------------------------------QFVVHRSP 178 (415)
T ss_dssp CS----------------------------------------------------------------------CEEEEEES
T ss_pred CC----------------------------------------------------------------------CEEEeCCC
Confidence 21 22345688
Q ss_pred CCEEEEEecCC-cEEEEEeCCC---cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEE-EEECCCc--EEEEeCCCC
Q 002407 568 DDVLDLSWSKS-QHLLSSSMDK---TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SGSLDAK--VRIWSIPER 640 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs~Dg---tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~-sgs~Dg~--I~IWDl~t~ 640 (927)
..|.+++|+|+ .+|++++.++ .|++||+.++++.....|...+.+++|+| ++++|+ +++.++. |++||+.++
T Consensus 179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~ 257 (415)
T 2hqs_A 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASG 257 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTC
T ss_pred CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCC
Confidence 89999999999 6799998885 99999999999887667889999999999 998777 6666655 999999999
Q ss_pred cEEEeccCCCcEEEEEECCCCCEEEEEECC-C--eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEE
Q 002407 641 QVVDWNDLHEMVTAACYTPDGQGALVGSYK-G--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (927)
Q Consensus 641 ~~v~~~~~~~~V~sla~spdg~~l~tgs~D-g--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Ll 717 (927)
++.....+...+.+++|+|||++|++++.+ + .|++||+.+++.... ..+...+.+++|+|+++ +|+
T Consensus 258 ~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l----------~~~~~~~~~~~~spdG~-~l~ 326 (415)
T 2hqs_A 258 QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI----------TWEGSQNQDADVSSDGK-FMV 326 (415)
T ss_dssp CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC----------CCSSSEEEEEEECTTSS-EEE
T ss_pred CEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEE----------ecCCCcccCeEECCCCC-EEE
Confidence 887777788899999999999999988864 4 688889988764321 24556788999999998 565
Q ss_pred EEECC---CcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC---cEEEEECCCC
Q 002407 718 VTSAD---SRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS---YVYVWKYEAE 775 (927)
Q Consensus 718 sgs~D---g~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg---~I~IWdl~s~ 775 (927)
+++.+ ..|++||........ ...+ ..+..++|+|+|++|++++.++ .|++||+...
T Consensus 327 ~~~~~~g~~~i~~~d~~~~~~~~-l~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 327 MVSSNGGQQHIAKQDLATGGVQV-LSST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp EEEECSSCEEEEEEETTTCCEEE-CCCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred EEECcCCceEEEEEECCCCCEEE-ecCC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 55543 589999975433321 2222 3788999999999999998877 7999998753
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.8e-21 Score=226.51 Aligned_cols=314 Identities=16% Similarity=0.119 Sum_probs=228.3
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec--CcCcccceeeccc
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQV--VESERKGELLEKQ 498 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~-gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv--~~~~~~~~l~~~~ 498 (927)
.+++++..+++|.+|+..++++. +++. +|. +.+++|+|||++|++++.|++|++||+ .+++.+.++.
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~~~~-----~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--- 219 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSKKIV-----KVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--- 219 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEE-----EEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE---
T ss_pred EEEEEEcCCCeEEEEECCCceEE-----EEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe---
Confidence 35567778899999998776653 4455 443 899999999999999999999999999 7776655543
Q ss_pred ccCccccEEEEccCC----CCCeeccccc-CCceeeecccccccccccccCcccccceEeecCCCceEEEcc--------
Q 002407 499 EDGHLNMLLLANGSP----EPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG-------- 565 (927)
Q Consensus 499 ~~~~~~~v~~v~~sp----d~~~la~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~g-------- 565 (927)
.......++++| ++.+++++.. ++.+..+.. .+.+++..+..
T Consensus 220 ---~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~----------------------~t~~~~~~i~~~g~~~~~~ 274 (543)
T 1nir_A 220 ---IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG----------------------ETLEPKQIVSTRGMTVDTQ 274 (543)
T ss_dssp ---CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET----------------------TTCCEEEEEECCEECSSSC
T ss_pred ---cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEec----------------------cccccceeecccCcccCcc
Confidence 123467889999 9998877753 454432211 12233444332
Q ss_pred --CCC-CEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEE--EEecCCceEEEEEccCCCCEEEEEE-CCCcEEEEeC
Q 002407 566 --HLD-DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLK--IFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSI 637 (927)
Q Consensus 566 --H~~-~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~--~~~h~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl 637 (927)
|.. .+..+.++++ ..+++...+++|.+||+.+.+.+. .+.+...+..+.|+| ++++|++++ .+++|.+||+
T Consensus 275 ~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~ 353 (543)
T 1nir_A 275 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDS 353 (543)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEET
T ss_pred ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECC-CCCEEEEEecCCCeEEEEEC
Confidence 333 7899999997 456777889999999998876544 556777899999999 999776655 5889999999
Q ss_pred CCCcEEEecc-----CCCcEEEEEECCC-CCEEEEEE-CCCeEEEEECCC-------CeeeeecccccccccccCCCCCe
Q 002407 638 PERQVVDWND-----LHEMVTAACYTPD-GQGALVGS-YKGSCHLYNTSE-------NKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 638 ~t~~~v~~~~-----~~~~V~sla~spd-g~~l~tgs-~Dg~I~IwDl~~-------~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
.+++++..+. |......+ ++|+ +..++++. .+++|.+||+.+ .+.+..+ ..+...+
T Consensus 354 ~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l---------~~~g~~~ 423 (543)
T 1nir_A 354 KDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL---------QGQGGGS 423 (543)
T ss_dssp TTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE---------ECSCSCC
T ss_pred CCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE---------EcCCCCc
Confidence 9999887554 32223333 4677 55566664 579999999988 5665554 3566778
Q ss_pred EEEEEcCCCCcEEEEEE-------CCCcEEEEECCcceEEEEe---------ecCCcceEEEEEecCCCEEEEEE-----
Q 002407 704 TGFQFAPGSSSEVLVTS-------ADSRIRVVDGIDLVHKFKG---------FRNTNSQISASLTANGRYVVSAS----- 762 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs-------~Dg~I~VwD~~~~~~~~~~---------~~~~~~v~sv~fspdg~~Lasgs----- 762 (927)
..++|+|+++ .|++++ .+++|.|||..+....+.. ..+...+..+.|+|+|++|+++.
T Consensus 424 ~~v~~~pdg~-~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~ 502 (543)
T 1nir_A 424 LFIKTHPKSS-HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKN 502 (543)
T ss_dssp CCEECCTTCC-EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTT
T ss_pred eEEEcCCCCC-cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCC
Confidence 8899999987 677766 2779999996543322121 23356788999999999998763
Q ss_pred CCCcEEEEECCCCCCccccc
Q 002407 763 EDSYVYVWKYEAESRPSRSK 782 (927)
Q Consensus 763 ~Dg~I~IWdl~s~~~~~~~~ 782 (927)
.|+.|.|||..+.+.....+
T Consensus 503 ~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 503 DSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp SCCEEEEEETTTTEEEEEEC
T ss_pred CCCeEEEEECCCceEEEeec
Confidence 47999999999987655444
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-19 Score=199.09 Aligned_cols=276 Identities=13% Similarity=0.162 Sum_probs=189.7
Q ss_pred EEccCceEEEEeccCc-ccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEecC--cCcccceeeccccc
Q 002407 425 FHGQERVRVRQYGKSC-KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED-CVIHVWQVV--ESERKGELLEKQED 500 (927)
Q Consensus 425 ~~g~~~~~V~i~~~~s-~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~D-gtVrVWdv~--~~~~~~~l~~~~~~ 500 (927)
+++..++.|++|+... +.+. ..+. ..|...+.+++|+|+|++|++++.+ +.|++|++. ++...
T Consensus 9 ~~~~~~~~v~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~--------- 75 (343)
T 1ri6_A 9 IASPESQQIHVWNLNHEGALT---LTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT--------- 75 (343)
T ss_dssp EEEGGGTEEEEEEECTTSCEE---EEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE---------
T ss_pred EeCCCCCeEEEEEECCCCcEE---Eeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee---------
Confidence 4446788999998742 2222 1222 3578889999999999999999886 999999986 22110
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-c
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q 579 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~ 579 (927)
.+..+..+. .+..++|+|+ .
T Consensus 76 ----------------------------------------------------------~~~~~~~~~-~~~~~~~s~dg~ 96 (343)
T 1ri6_A 76 ----------------------------------------------------------FAAESALPG-SLTHISTDHQGQ 96 (343)
T ss_dssp ----------------------------------------------------------EEEEEECSS-CCSEEEECTTSS
T ss_pred ----------------------------------------------------------eccccccCC-CCcEEEEcCCCC
Confidence 011122222 6778999999 5
Q ss_pred EEEEEeC-CCcEEEEeCC---CCcEEEEEecCCceEEEEEccCCCCEEEEEE-CCCcEEEEeCCC-CcEEE------ecc
Q 002407 580 HLLSSSM-DKTVRLWHLS---SKTCLKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPE-RQVVD------WND 647 (927)
Q Consensus 580 ~L~Sgs~-DgtV~lWDl~---t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~t-~~~v~------~~~ 647 (927)
+|++++. ++.|++||+. ..+.+..+.....+.+++|+| ++++|++++ .++.|++||+.+ +++.. ...
T Consensus 97 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 175 (343)
T 1ri6_A 97 FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV 175 (343)
T ss_dssp EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS
T ss_pred EEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccC
Confidence 5666554 8899999994 444555555666799999999 888888777 899999999987 65532 222
Q ss_pred CCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCC--CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 648 LHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSE--NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~--~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
....+..++|+|+++++++++ .++.|.+|++.. +.......+.... ........+..++|+|++..++++...++.
T Consensus 176 ~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~ 254 (343)
T 1ri6_A 176 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP-ENFSDTRWAADIHITPDGRHLYACDRTASL 254 (343)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC-TTCCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccC-ccccccCCccceEECCCCCEEEEEecCCCE
Confidence 345788999999999876665 789999999954 4332111111000 001223467789999999855556668999
Q ss_pred EEEEECCc---ceEEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCC
Q 002407 725 IRVVDGID---LVHKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEA 774 (927)
Q Consensus 725 I~VwD~~~---~~~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s 774 (927)
|.+||... ....+........+..++|+|+|++|++++ .++.|.+|+++.
T Consensus 255 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 255 ITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred EEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 99999651 122222222233477899999999988887 689999997653
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-19 Score=213.31 Aligned_cols=277 Identities=9% Similarity=0.071 Sum_probs=209.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccccccccccc
Q 002407 464 FSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSL 543 (927)
Q Consensus 464 fSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~ 543 (927)
|+|++.++++++.|++|.+||..+++.+..+.. ++. +..+.++|++.+++++..++.+
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~----g~~--~~~v~~spdg~~l~v~~~d~~V---------------- 202 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT----GYA--VHISRMSASGRYLLVIGRDARI---------------- 202 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC----STT--EEEEEECTTSCEEEEEETTSEE----------------
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEec----Ccc--cceEEECCCCCEEEEECCCCeE----------------
Confidence 889999999999999999999999887776531 222 6788999999999988777666
Q ss_pred CcccccceEeec---CCCceEEEccCCCCEEEEEecC----C-cEEEEEe-CCCcEEEEeCCCCcEEEEEec--------
Q 002407 544 DHMVVPETVFAL---SDKPICSFQGHLDDVLDLSWSK----S-QHLLSSS-MDKTVRLWHLSSKTCLKIFSH-------- 606 (927)
Q Consensus 544 ~~~~~~~~v~~~---s~k~i~~l~gH~~~V~~l~~sp----d-~~L~Sgs-~DgtV~lWDl~t~~~~~~~~h-------- 606 (927)
.+|++ +.+.+.++. +...+..++|+| + ++|++++ .+++|.+||..++++++++..
T Consensus 203 -------~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~ 274 (543)
T 1nir_A 203 -------DMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQ 274 (543)
T ss_dssp -------EEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSC
T ss_pred -------EEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcc
Confidence 33444 345556666 445689999999 8 6777777 489999999999999988752
Q ss_pred ----CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE--eccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECC
Q 002407 607 ----SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD--WNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTS 679 (927)
Q Consensus 607 ----~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~--~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~ 679 (927)
...+..+.++|.+..++++...++.|.+||+.+.+.+. ...+...+..++|+|+|++|++++ .+++|.+||+.
T Consensus 275 ~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~ 354 (543)
T 1nir_A 275 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK 354 (543)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECC
Confidence 22789999999445566777788999999998765432 445566788899999999877665 58899999999
Q ss_pred CCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEECCc---------ceEEEEeecCCcceEEE
Q 002407 680 ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS-ADSRIRVVDGID---------LVHKFKGFRNTNSQISA 749 (927)
Q Consensus 680 ~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs-~Dg~I~VwD~~~---------~~~~~~~~~~~~~v~sv 749 (927)
++++...+... ...|......+ ++|++..+++++. .|++|.|||... .+..+..+ ...+..+
T Consensus 355 tg~l~~~i~~g-----~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~--g~~~~~v 426 (543)
T 1nir_A 355 DRRLSALVDVG-----KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ--GGGSLFI 426 (543)
T ss_dssp TTEEEEEEECS-----SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCE
T ss_pred CCeEEEeeccC-----CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC--CCCceEE
Confidence 99987765421 12354444444 5777554666665 689999999643 44555543 4456778
Q ss_pred EEecCCCEEEEEE-------CCCcEEEEECCCCCCc
Q 002407 750 SLTANGRYVVSAS-------EDSYVYVWKYEAESRP 778 (927)
Q Consensus 750 ~fspdg~~Lasgs-------~Dg~I~IWdl~s~~~~ 778 (927)
.|+|++++|++++ .+++|.|||+.+.+..
T Consensus 427 ~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 427 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp ECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred EcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 9999999999987 2779999999998765
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-19 Score=226.50 Aligned_cols=279 Identities=12% Similarity=0.008 Sum_probs=209.7
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc-CcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE-SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~-~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
+.+.+|.+.|.++.|+++ .++++++.|++++||.+.. +.....+. .+. .+....|+|++..++... ++.+.
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~-----~~~-~~~~~~~SpDG~~la~~~-~~~i~ 268 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT-----SFT-DYYPRHLNTDGRRILFSK-GGSIY 268 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECC-----CCC-SSCEEEEEESSSCEEEEE-TTEEE
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEec-----CCC-CcceeeEcCCCCEEEEEe-CCEEE
Confidence 445789999999999998 6777888899999998764 22222221 111 234458889998887763 33332
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEc-----------cCCCCEEEEEec-CC-cEEEEEeCCCcEEEEeC
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-----------GHLDDVLDLSWS-KS-QHLLSSSMDKTVRLWHL 595 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~-----------gH~~~V~~l~~s-pd-~~L~Sgs~DgtV~lWDl 595 (927)
.+. .....+..+. .|...+..++|+ |+ .+|++++ ++.|++|++
T Consensus 269 ~~d-----------------------~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~ 324 (1045)
T 1k32_A 269 IFN-----------------------PDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV 324 (1045)
T ss_dssp EEC-----------------------TTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred Eec-----------------------CCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence 222 1112222222 255678999999 99 4577766 889999999
Q ss_pred CCCcEEEEEecCC-ceEEEEEccCCCCEEEEEECCCcEE-EEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeE
Q 002407 596 SSKTCLKIFSHSD-YVTCIQFNPVDDRYFISGSLDAKVR-IWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSC 673 (927)
Q Consensus 596 ~t~~~~~~~~h~~-~V~~v~fsp~dg~~L~sgs~Dg~I~-IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I 673 (927)
..++......|.. .+..++|+ +++.|++++.+..|. +|++.+++......+...+..++|+|||++|++++.++.|
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v 402 (1045)
T 1k32_A 325 SGTYVLKVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEI 402 (1045)
T ss_dssp TSSBEEECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEE
T ss_pred CCCceEEccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeE
Confidence 9888766555777 89999999 788899888888888 9999988877766666789999999999999999999999
Q ss_pred EEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC----------CcEEEEECCcceEEEEeecCC
Q 002407 674 HLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD----------SRIRVVDGIDLVHKFKGFRNT 743 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D----------g~I~VwD~~~~~~~~~~~~~~ 743 (927)
++||+.+++..... ..|...+.+++|+|++. +|++++.+ +.|++||..... ......+.
T Consensus 403 ~~~d~~tg~~~~~~---------~~~~~~v~~~~~SpDG~-~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~ 471 (1045)
T 1k32_A 403 MTVDLETGKPTVIE---------RSREAMITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTEN 471 (1045)
T ss_dssp EEEETTTCCEEEEE---------ECSSSCCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSS
T ss_pred EEEECCCCceEEec---------cCCCCCccceEECCCCC-eEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCC
Confidence 99999998766543 25777889999999998 56666554 489999976543 33333445
Q ss_pred cceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 744 NSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 744 ~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
..+..++|+|||++|++++.++...+|+..
T Consensus 472 ~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 472 SHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp SBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred cccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 667889999999999999998888888754
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.5e-19 Score=202.22 Aligned_cols=235 Identities=12% Similarity=0.024 Sum_probs=183.9
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEecCcCcccceeecccccCccccEE
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC---VIHVWQVVESERKGELLEKQEDGHLNMLL 507 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~Dg---tVrVWdv~~~~~~~~l~~~~~~~~~~~v~ 507 (927)
+.|++|+...+. .+.|.+|.+.|.+++|+|||++||+++.|+ .|++||+.+++..
T Consensus 159 ~~i~i~d~~g~~------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~---------------- 216 (415)
T 2hqs_A 159 YELRVSDYDGYN------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------------- 216 (415)
T ss_dssp EEEEEEETTSCS------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----------------
T ss_pred ceEEEEcCCCCC------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE----------------
Confidence 799999976443 255678999999999999999999999885 9999998765421
Q ss_pred EEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEE-EEe
Q 002407 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL-SSS 585 (927)
Q Consensus 508 ~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~-Sgs 585 (927)
.+..|...+.+++|+|+ .+|+ +++
T Consensus 217 ------------------------------------------------------~l~~~~~~~~~~~~spdg~~la~~~~ 242 (415)
T 2hqs_A 217 ------------------------------------------------------QVASFPRHNGAPAFSPDGSKLAFALS 242 (415)
T ss_dssp ------------------------------------------------------EEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred ------------------------------------------------------EeecCCCcccCEEEcCCCCEEEEEEe
Confidence 22346678999999999 4566 666
Q ss_pred CCCc--EEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEEC-CC--cEEEEeCCCCcEEEeccCCCcEEEEEECCC
Q 002407 586 MDKT--VRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL-DA--KVRIWSIPERQVVDWNDLHEMVTAACYTPD 660 (927)
Q Consensus 586 ~Dgt--V~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~-Dg--~I~IWDl~t~~~v~~~~~~~~V~sla~spd 660 (927)
.++. |++||+.+++......|...+.+++|+| ++++|++++. ++ .|.+||+.+++......+...+..++|+|+
T Consensus 243 ~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spd 321 (415)
T 2hqs_A 243 KTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSD 321 (415)
T ss_dssp TTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTT
T ss_pred cCCCceEEEEECCCCCEEeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCC
Confidence 6655 9999999988866556888999999999 9998888886 44 688889998887666666678999999999
Q ss_pred CCEEEEEECC---CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC---cEEEEECCc-c
Q 002407 661 GQGALVGSYK---GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS---RIRVVDGID-L 733 (927)
Q Consensus 661 g~~l~tgs~D---g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg---~I~VwD~~~-~ 733 (927)
|++|++++.+ ..|++||+.+++.... ..+. .+.+++|+|++. .|++++.++ .|++||... .
T Consensus 322 G~~l~~~~~~~g~~~i~~~d~~~~~~~~l----------~~~~-~~~~~~~spdg~-~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 322 GKFMVMVSSNGGQQHIAKQDLATGGVQVL----------SSTF-LDETPSLAPNGT-MVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp SSEEEEEEECSSCEEEEEEETTTCCEEEC----------CCSS-SCEEEEECTTSS-EEEEEEEETTEEEEEEEETTSCC
T ss_pred CCEEEEEECcCCceEEEEEECCCCCEEEe----------cCCC-CcCCeEEcCCCC-EEEEEEcCCCccEEEEEECCCCc
Confidence 9999988764 5899999998876432 1332 799999999997 666666665 799999643 2
Q ss_pred eEEEEeecCCcceEEEEEecCCC
Q 002407 734 VHKFKGFRNTNSQISASLTANGR 756 (927)
Q Consensus 734 ~~~~~~~~~~~~v~sv~fspdg~ 756 (927)
...+ ..+...|.+++|+|.-.
T Consensus 390 ~~~l--~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 390 KARL--PATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEC--CCSSSEEEEEEECCCCC
T ss_pred EEEe--eCCCCCCcCCccccccc
Confidence 3333 34567899999999653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-19 Score=194.28 Aligned_cols=271 Identities=11% Similarity=0.087 Sum_probs=192.0
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecCcCcccceeeccc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~-DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
...++++...++.|.+|+..++++... +..+...+ +++|+|+|++|++++. ++.|.+||+.+++..
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~-----~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~------- 75 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQ-----ITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK------- 75 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEE-----EECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-------
T ss_pred CCEEEEEecCCCeEEEEeCcccceeee-----EEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-------
Confidence 344466777889999999887766433 34556667 9999999997777665 889999998765431
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd 578 (927)
...+..+..++.+++|+|+
T Consensus 76 -------------------------------------------------------------~~~~~~~~~~~~~~~~s~d 94 (331)
T 3u4y_A 76 -------------------------------------------------------------VVAIQEGQSSMADVDITPD 94 (331)
T ss_dssp -------------------------------------------------------------EEEEEECSSCCCCEEECTT
T ss_pred -------------------------------------------------------------EEecccCCCCccceEECCC
Confidence 1112234444445899999
Q ss_pred -cEEEEEeCCC---cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEE-EEEECCCc-EEEEeCCCCcEE-----Eecc
Q 002407 579 -QHLLSSSMDK---TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYF-ISGSLDAK-VRIWSIPERQVV-----DWND 647 (927)
Q Consensus 579 -~~L~Sgs~Dg---tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L-~sgs~Dg~-I~IWDl~t~~~v-----~~~~ 647 (927)
.+|+++..++ .|++||+.+++.+..+.+...+.+++|+| ++++| ++...++. |.+|++.....+ ....
T Consensus 95 g~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 173 (331)
T 3u4y_A 95 DQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS 173 (331)
T ss_dssp SSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC
T ss_pred CCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc
Confidence 5566444442 89999999999999888777789999999 88754 45566688 999998753322 2334
Q ss_pred CCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCCCee---eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC
Q 002407 648 LHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKL---QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~~~~---~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg 723 (927)
....+..++|+|+|+++++++ .++.|.+||+.+++. ...+ .....+..++|+|+++.++++...++
T Consensus 174 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~----------~~~~~~~~~~~spdg~~l~v~~~~~~ 243 (331)
T 3u4y_A 174 GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV----------GTNNLPGTIVVSRDGSTVYVLTESTV 243 (331)
T ss_dssp SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE----------ECSSCCCCEEECTTSSEEEEECSSEE
T ss_pred CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec----------cCCCCCceEEECCCCCEEEEEEcCCC
Confidence 456789999999999766655 588999999998876 4332 23356788999999985455555688
Q ss_pred cEEEEECCcceE----EEEee--cCCcc---eEEEEEecCCCEEEEEEC-CCcEEEEECCCC
Q 002407 724 RIRVVDGIDLVH----KFKGF--RNTNS---QISASLTANGRYVVSASE-DSYVYVWKYEAE 775 (927)
Q Consensus 724 ~I~VwD~~~~~~----~~~~~--~~~~~---v~sv~fspdg~~Lasgs~-Dg~I~IWdl~s~ 775 (927)
.|.+||...... .+... ..... ...++|+|||++|++++. ++.|+|||+...
T Consensus 244 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 244 DVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 899999654322 11111 01111 235799999998876655 568999999763
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=223.04 Aligned_cols=312 Identities=11% Similarity=0.026 Sum_probs=214.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-CC-----cEEEEecCcCcccceeeccccc----------Cc---------cccEEEEc
Q 002407 456 NGSIWSIKFSLDGRYLASAGE-DC-----VIHVWQVVESERKGELLEKQED----------GH---------LNMLLLAN 510 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~-Dg-----tVrVWdv~~~~~~~~l~~~~~~----------~~---------~~~v~~v~ 510 (927)
...|.+++|||||++||+++. |+ .|++||+.+++....+...... .. ...+..++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 8999999988754443211100 00 02366789
Q ss_pred cCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCC---ceEEEccCCCCEEEEEecCC-cEEEEEeC
Q 002407 511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK---PICSFQGHLDDVLDLSWSKS-QHLLSSSM 586 (927)
Q Consensus 511 ~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k---~i~~l~gH~~~V~~l~~spd-~~L~Sgs~ 586 (927)
|+||+..++.+.. +.+ .+|++... .+..+..|...+..++|+|| .+|+.++
T Consensus 116 ~SpDg~~l~~~~~-~~i-----------------------~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~- 170 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GEL-----------------------YLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR- 170 (741)
T ss_dssp ECTTSSEEEEEET-TEE-----------------------EEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-
T ss_pred ECCCCCEEEEEeC-CcE-----------------------EEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-
Confidence 9999998887654 332 34555544 55667788889999999999 5566666
Q ss_pred CCcEEEEeCCCCcEEEEEe-cCCc----------------eEEEEEccCCCCEEEEEECCC-------------------
Q 002407 587 DKTVRLWHLSSKTCLKIFS-HSDY----------------VTCIQFNPVDDRYFISGSLDA------------------- 630 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~~-h~~~----------------V~~v~fsp~dg~~L~sgs~Dg------------------- 630 (927)
++.|++||+.+++...... +... +..++|+| ++++|++++.|+
T Consensus 171 ~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~ 249 (741)
T 2ecf_A 171 GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVI 249 (741)
T ss_dssp TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence 5699999999988766554 2222 47899999 999999988765
Q ss_pred --------------cEEEEeCCC-CcEEEec---cCCCcEEEEEECCCCCEEEEEEC-----CCeEEEEECCCCeeeeec
Q 002407 631 --------------KVRIWSIPE-RQVVDWN---DLHEMVTAACYTPDGQGALVGSY-----KGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 631 --------------~I~IWDl~t-~~~v~~~---~~~~~V~sla~spdg~~l~tgs~-----Dg~I~IwDl~~~~~~~~~ 687 (927)
.|.+||+.+ ++..... .+...+..++| |||++|+++.. +..|++||+.+++.....
T Consensus 250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~ 328 (741)
T 2ecf_A 250 EQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA 328 (741)
T ss_dssp EEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred EeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence 789999998 8766544 35568999999 99999998764 567999999998766543
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC--cceEEEEeecCCcceEEE-EEecCCCEEEEE-EC
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI--DLVHKFKGFRNTNSQISA-SLTANGRYVVSA-SE 763 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~--~~~~~~~~~~~~~~v~sv-~fspdg~~Lasg-s~ 763 (927)
.... ......+..++|+|+++ ++++++.++.++||... .....+ ..+...+..+ .|+|+|++|+.. +.
T Consensus 329 ~~~~-----~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~~~~l--~~~~~~v~~~~~~s~dg~~l~~~~~~ 400 (741)
T 2ecf_A 329 HETS-----PTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGKAAAL--THGNWSVDELLAVDEKAGLAYFRAGI 400 (741)
T ss_dssp EEEC-----SSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSCEEES--CCSSSCEEEEEEEETTTTEEEEEECS
T ss_pred EcCC-----CCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCCeeee--eecceEEEeEeEEeCCCCEEEEEEeC
Confidence 2100 01111456789999998 88888899987777632 222222 2334557676 599999987654 44
Q ss_pred CC--cEEEEECCC-CCCcccccccceeeeeeeecCCCeEEEEe
Q 002407 764 DS--YVYVWKYEA-ESRPSRSKSITVTHSYEHFHCQDVSVAIP 803 (927)
Q Consensus 764 Dg--~I~IWdl~s-~~~~~~~~~~~~~~~~~~~~~~~v~vavs 803 (927)
++ .++||++.. +..+..+.. ........|++++..+++.
T Consensus 401 ~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~ 442 (741)
T 2ecf_A 401 ESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDS 442 (741)
T ss_dssp SCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEE
T ss_pred CCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEE
Confidence 55 899999865 332333322 1112234566665555543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-19 Score=189.14 Aligned_cols=251 Identities=14% Similarity=0.133 Sum_probs=183.3
Q ss_pred ccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc-CcccceeecccccCcccc
Q 002407 427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE-SERKGELLEKQEDGHLNM 505 (927)
Q Consensus 427 g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~-~~~~~~l~~~~~~~~~~~ 505 (927)
+..+++|++|+..+++.. .+..|.+.|.+++|+|+|++|++++ ++.|++||+.+ ++....
T Consensus 18 ~~~~~~i~~~d~~~~~~~------~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~------------ 78 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMR------VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV------------ 78 (297)
T ss_dssp CCCCEEEEEEETTTTEEE------EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC------------
T ss_pred CCcceeEEEEeCCCCcee------eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe------------
Confidence 456889999998877653 3456899999999999999999987 88999999876 432111
Q ss_pred EEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccC-CCCEEEEEecCC-cEEEE
Q 002407 506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH-LDDVLDLSWSKS-QHLLS 583 (927)
Q Consensus 506 v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH-~~~V~~l~~spd-~~L~S 583 (927)
+.+| ...|.+++|+|+ .+|++
T Consensus 79 ---------------------------------------------------------~~~~~~~~~~~~~~spdg~~l~~ 101 (297)
T 2ojh_A 79 ---------------------------------------------------------DTGFATICNNDHGISPDGALYAI 101 (297)
T ss_dssp ---------------------------------------------------------CCTTCCCBCSCCEECTTSSEEEE
T ss_pred ---------------------------------------------------------ccccccccccceEECCCCCEEEE
Confidence 0112 356778899999 67888
Q ss_pred Ee--CCCc--EEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEE-EEECCCcEEEEeC--CCCcEEEeccCCCcEEEEE
Q 002407 584 SS--MDKT--VRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SGSLDAKVRIWSI--PERQVVDWNDLHEMVTAAC 656 (927)
Q Consensus 584 gs--~Dgt--V~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~-sgs~Dg~I~IWDl--~t~~~v~~~~~~~~V~sla 656 (927)
++ .++. |.+|++.+++ ...+.+...+..++|+| ++++|+ ++..++.++||++ .+++......+...+.+++
T Consensus 102 ~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 179 (297)
T 2ojh_A 102 SDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPD 179 (297)
T ss_dssp EECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEE
T ss_pred EEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccce
Confidence 87 3344 4455555555 34445455699999999 888776 7888999999984 5667767777778999999
Q ss_pred ECCCCCEEEEEE-CCCeEEEEECC-CCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-----------C
Q 002407 657 YTPDGQGALVGS-YKGSCHLYNTS-ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-----------S 723 (927)
Q Consensus 657 ~spdg~~l~tgs-~Dg~I~IwDl~-~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-----------g 723 (927)
|+|++++|++++ .++.+.||++. .+.....+ ..+...+..++|+|++. +|++++.+ .
T Consensus 180 ~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 180 YSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI---------TDSAYGDWFPHPSPSGD-KVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC---------CCCSEEEEEEEECTTSS-EEEEEEEETTCCSCCSSEEE
T ss_pred ECCCCCEEEEEecCCCCccEEEECCCCCCcEEE---------ecCCcccCCeEECCCCC-EEEEEEcCCCCCcccccCce
Confidence 999999888776 48889999875 33333222 24567789999999988 56666554 5
Q ss_pred cEEEEECCc--ceEEEEeecCCcceEEEEEecCCCEEEEEECCC
Q 002407 724 RIRVVDGID--LVHKFKGFRNTNSQISASLTANGRYVVSASEDS 765 (927)
Q Consensus 724 ~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg 765 (927)
.|++||... .........+...+..++|+|++++|++++.+.
T Consensus 250 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 250 RVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 699999643 333333334566788899999999999887654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-19 Score=218.03 Aligned_cols=294 Identities=12% Similarity=0.086 Sum_probs=205.9
Q ss_pred EEEEeccCcccccceeeeeEeecCC------------------------CCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHN------------------------GSIWSIKFSLDGRYLASAGEDCVIHVWQVVE 487 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~------------------------~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~ 487 (927)
.|++|+..+++...+. ..|. ..|.+++|||||++|++++. +.|++||+.+
T Consensus 65 ~i~~~d~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~ 138 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLV-----DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQ 138 (741)
T ss_dssp EEEEEETTTCCEEEEE-----CGGGTC--------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSS
T ss_pred EEEEEECCCCceeEcc-----chhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCC
Confidence 8999998877654433 2222 34889999999999999986 9999999988
Q ss_pred Cc--ccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEE-c
Q 002407 488 SE--RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-Q 564 (927)
Q Consensus 488 ~~--~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l-~ 564 (927)
+. ....+ ..+...+..+.|+|++..++..... .+. ++++.......+ .
T Consensus 139 ~~~~~~~~l-----~~~~~~~~~~~~SPDG~~la~~~~~-~i~-----------------------~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 139 EGKAAVRQL-----THGEGFATDAKLSPKGGFVSFIRGR-NLW-----------------------VIDLASGRQMQLTA 189 (741)
T ss_dssp CSTTSCCBC-----CCSSSCEEEEEECTTSSEEEEEETT-EEE-----------------------EEETTTTEEEECCC
T ss_pred CCcceEEEc-----ccCCcccccccCCCCCCEEEEEeCC-cEE-----------------------EEecCCCCEEEecc
Confidence 72 22222 2334568899999999988877543 332 222222222221 1
Q ss_pred cCCC----------------CEEEEEecCC-cEEEEEeCCC---------------------------------cEEEEe
Q 002407 565 GHLD----------------DVLDLSWSKS-QHLLSSSMDK---------------------------------TVRLWH 594 (927)
Q Consensus 565 gH~~----------------~V~~l~~spd-~~L~Sgs~Dg---------------------------------tV~lWD 594 (927)
.+.. .+..++|+|| .+|++++.|+ .|++||
T Consensus 190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 2222 2478999999 6688887765 799999
Q ss_pred CCC-CcEEEEE---ecCCceEEEEEccCCCCEEEEEEC-----CCcEEEEeCCCCcEEEeccCCC-----cEEEEEECCC
Q 002407 595 LSS-KTCLKIF---SHSDYVTCIQFNPVDDRYFISGSL-----DAKVRIWSIPERQVVDWNDLHE-----MVTAACYTPD 660 (927)
Q Consensus 595 l~t-~~~~~~~---~h~~~V~~v~fsp~dg~~L~sgs~-----Dg~I~IWDl~t~~~v~~~~~~~-----~V~sla~spd 660 (927)
+.+ ++..... .|...+..++| | ++++|++++. +..|++||+.+++.......+. .+..++|+||
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd 347 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD 347 (741)
T ss_dssp SSTTCCCEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred CCCCCceEEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence 998 8776554 36788999999 9 9998887764 5679999999988766544332 3468899999
Q ss_pred CCEEEEEECCCeEEEEECC-CCeeeeecccccccccccCCCCCeEEE-EEcCCCCcEEEEEECCC--cEEEEECC---cc
Q 002407 661 GQGALVGSYKGSCHLYNTS-ENKLQQKSPINLQNKKKRSHQRKITGF-QFAPGSSSEVLVTSADS--RIRVVDGI---DL 733 (927)
Q Consensus 661 g~~l~tgs~Dg~I~IwDl~-~~~~~~~~~i~~~~~~~~~h~~~Vtsl-~fspdg~~~Llsgs~Dg--~I~VwD~~---~~ 733 (927)
|++++++..+|.++||.+. .+. ...+ ..+...|..+ .|+|++..++++++.++ .++||+.. ..
T Consensus 348 g~~~~~~~~~g~~~l~~~~~~~~-~~~l---------~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~ 417 (741)
T 2ecf_A 348 GSILWSSERTGFQHLYRIDSKGK-AAAL---------THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ 417 (741)
T ss_dssp SCEEEEECTTSSCEEEEECSSSC-EEES---------CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC
T ss_pred CeEEEEecCCCccEEEEEcCCCC-eeee---------eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC
Confidence 9999999999987787765 233 2222 3556678787 59999985555666666 89999842 22
Q ss_pred eEEEEeecCCcceEEEEEecCCCEEEEEECC----CcEEEEECCCC
Q 002407 734 VHKFKGFRNTNSQISASLTANGRYVVSASED----SYVYVWKYEAE 775 (927)
Q Consensus 734 ~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D----g~I~IWdl~s~ 775 (927)
...+.. ...+..++|+|||++|+....+ ..+++|+....
T Consensus 418 ~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 418 PQRLSK---APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp CEECCC---SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred eeeccc---CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 333332 4457799999999998876543 46899987543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-19 Score=193.64 Aligned_cols=272 Identities=10% Similarity=0.059 Sum_probs=195.1
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEee-cCCC-CEEEEEEcCCCCEEE-EEeCCCcEEEEecCcCcccceeecccc
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNG-SIWSIKFSLDGRYLA-SAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~-gH~~-~I~~vafSpdG~~La-Sgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
+++++..++.|.+|+..+++.... +. ++.. .+..++|+|+|++|+ ++..++.|.+||+.+++....+....
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~- 76 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKV-----ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST- 76 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEE-----EECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB-
T ss_pred EEEEcCCCCeEEEEECCCCcEEEE-----EEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC-
Confidence 567788889999999877654332 22 2322 488999999998764 55568899999998765443321000
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
. ..|...+..++|+|+
T Consensus 77 ----------------------------------------------------------~-----~~~~~~~~~~~~s~dg 93 (337)
T 1pby_B 77 ----------------------------------------------------------P-----EERVKSLFGAALSPDG 93 (337)
T ss_dssp ----------------------------------------------------------T-----TEEEECTTCEEECTTS
T ss_pred ----------------------------------------------------------c-----ccccccccceEECCCC
Confidence 0 001123456889998
Q ss_pred cEEEEEe------------CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec
Q 002407 579 QHLLSSS------------MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN 646 (927)
Q Consensus 579 ~~L~Sgs------------~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~ 646 (927)
.+|+++. .++.|.+||+.+++.+..+.....+.+++|+| ++++|+++ ++.|.+||+.+++++...
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~ 170 (337)
T 1pby_B 94 KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDK 170 (337)
T ss_dssp SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEE
T ss_pred CEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeee
Confidence 4777775 67999999999999888888777789999999 88888877 688999999999887655
Q ss_pred cCCCcEEEEEECCCCCEEEEEECCC------------------------eEEEEECCCCeeeeecccccccccccCCCCC
Q 002407 647 DLHEMVTAACYTPDGQGALVGSYKG------------------------SCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (927)
Q Consensus 647 ~~~~~V~sla~spdg~~l~tgs~Dg------------------------~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (927)
........+.|+|+++.+++....+ .|.+||+.+++.. ...+ ..+...
T Consensus 171 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~-------~~~~~~ 242 (337)
T 1pby_B 171 PIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV-------RIMDVF 242 (337)
T ss_dssp CSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE-------EECSSC
T ss_pred eccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec-------CCCCCc
Confidence 4433122347899998776554332 4689999988765 3221 245567
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 703 ITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 703 Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
+.+++|+|++. +++++ ++.|++||........... ....+..++|+|+|++|++++.++.|++||+.+++..
T Consensus 243 ~~~~~~s~dg~-~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 243 YFSTAVNPAKT-RAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEEECTTSS-EEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred eeeEEECCCCC-EEEEe--CCeEEEEECCCCcCcceec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 88999999987 55555 7999999976543322221 2345678999999999999999999999999886543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=211.24 Aligned_cols=308 Identities=13% Similarity=0.114 Sum_probs=199.6
Q ss_pred CceEEEEeccCcccc--cceeeeeEe-----------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceee
Q 002407 429 ERVRVRQYGKSCKDL--TALYKCQEI-----------QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495 (927)
Q Consensus 429 ~~~~V~i~~~~s~~l--~~l~~~q~L-----------~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~ 495 (927)
.++ | +|+..+++. ..++....+ ..+...|.+++|+|| ++|+.+. ++.|++||+.+++.....
T Consensus 43 ~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~- 117 (706)
T 2z3z_A 43 GDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLF- 117 (706)
T ss_dssp TTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEE-
T ss_pred CCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEcc-
Confidence 344 7 999887776 444321111 011256999999999 6666554 699999999887543322
Q ss_pred cccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEc-----------
Q 002407 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ----------- 564 (927)
Q Consensus 496 ~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~----------- 564 (927)
.+...+..+.|+|++..++.. .++.+..+...... . ..++......
T Consensus 118 -----~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~--------~---------~~g~~~~~~~~~~~~~~~g~~ 174 (706)
T 2z3z_A 118 -----DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLG--------E---------GMSRAIAVTIDGTETLVYGQA 174 (706)
T ss_dssp -----CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTT--------S---------CCCCCEESCSCCBTTEEESSC
T ss_pred -----CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccc--------c---------cCCCcEEeccCCCCCeEcccc
Confidence 122345567899999988885 44444333221100 0 0011111111
Q ss_pred ---cCCCCEEEEEecCC-cEEEEEe---------------------------------CCCcEEEEeCCCCcEEEEE---
Q 002407 565 ---GHLDDVLDLSWSKS-QHLLSSS---------------------------------MDKTVRLWHLSSKTCLKIF--- 604 (927)
Q Consensus 565 ---gH~~~V~~l~~spd-~~L~Sgs---------------------------------~DgtV~lWDl~t~~~~~~~--- 604 (927)
.+...+.++.|+|| .+|++++ .+..|++||+.+++.....
T Consensus 175 ~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 254 (706)
T 2z3z_A 175 VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE 254 (706)
T ss_dssp CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS
T ss_pred hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC
Confidence 22233688999999 6788877 4467999999998876655
Q ss_pred ecCCceEEEEEccCCCCEEEEEECCC-----cEEEEeCCCC-cEEEecc--CCC---cEEEEEECC--CCCEEEEEECCC
Q 002407 605 SHSDYVTCIQFNPVDDRYFISGSLDA-----KVRIWSIPER-QVVDWND--LHE---MVTAACYTP--DGQGALVGSYKG 671 (927)
Q Consensus 605 ~h~~~V~~v~fsp~dg~~L~sgs~Dg-----~I~IWDl~t~-~~v~~~~--~~~---~V~sla~sp--dg~~l~tgs~Dg 671 (927)
.|...+.+++|+| ++++|++++.++ .|++||+.++ ....... ... .+..++|+| +|++++++..++
T Consensus 255 ~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 255 PKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp CTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 3667899999999 999999887775 8999999998 4433321 121 246789999 999999999999
Q ss_pred eEEEEECC-CCeeeeecccccccccccCCCCCeEE-EEEcCCCCcEEEEEECCC----cEEEEECCcceEEEEeecCCcc
Q 002407 672 SCHLYNTS-ENKLQQKSPINLQNKKKRSHQRKITG-FQFAPGSSSEVLVTSADS----RIRVVDGIDLVHKFKGFRNTNS 745 (927)
Q Consensus 672 ~I~IwDl~-~~~~~~~~~i~~~~~~~~~h~~~Vts-l~fspdg~~~Llsgs~Dg----~I~VwD~~~~~~~~~~~~~~~~ 745 (927)
.++||.+. ++.....+ ..+...+.. ++|+|++..+++++..++ .|..||...... ....+...
T Consensus 334 ~~~l~~~~~~~~~~~~l---------~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~ 402 (706)
T 2z3z_A 334 WNHLYLYDTTGRLIRQV---------TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT--KDLTPESG 402 (706)
T ss_dssp SCEEEEEETTSCEEEEC---------CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC--EESCCSSS
T ss_pred ccEEEEEECCCCEEEec---------CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc--eeccCCCc
Confidence 99998876 44433332 245566776 799999985555555555 666677543221 11224556
Q ss_pred eEEEEEecCCCEEEEEECC----CcEEEEECCCCC
Q 002407 746 QISASLTANGRYVVSASED----SYVYVWKYEAES 776 (927)
Q Consensus 746 v~sv~fspdg~~Lasgs~D----g~I~IWdl~s~~ 776 (927)
+..++|+|||++|+....+ +.|++||+.++.
T Consensus 403 ~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 403 MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred eEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 8899999999998877544 459999998764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-17 Score=184.57 Aligned_cols=269 Identities=12% Similarity=0.115 Sum_probs=178.0
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEecCcCcccceeecccccCccccEEE
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE---DCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~---DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~ 508 (927)
.|..|+..++++..+ .+..+...+..|+|+|||+ |++++. ++.|++|++.++...
T Consensus 19 ~v~~~d~~tg~~~~~----~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~----------------- 76 (347)
T 3hfq_A 19 YQGTLDTTAKTLTND----GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH----------------- 76 (347)
T ss_dssp EEEEEETTTTEEEEE----EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE-----------------
T ss_pred EEEEEcCCCCeEEEe----eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE-----------------
Confidence 344444444544332 2234567788899999999 555544 689999998544310
Q ss_pred EccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEe-C
Q 002407 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSS-M 586 (927)
Q Consensus 509 v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs-~ 586 (927)
.+..+..+...+..++|+|+ .+|++++ .
T Consensus 77 --------------------------------------------------~~~~~~~~~~~p~~~a~spdg~~l~~~~~~ 106 (347)
T 3hfq_A 77 --------------------------------------------------KLNTVVAPGTPPAYVAVDEARQLVYSANYH 106 (347)
T ss_dssp --------------------------------------------------EEEEEEEESCCCSEEEEETTTTEEEEEETT
T ss_pred --------------------------------------------------EeeeeecCCCCCEEEEECCCCCEEEEEeCC
Confidence 11122335566788999999 5677777 6
Q ss_pred CCcEEEEeCCC-Cc--EEEEEecC----------CceEEEEEccCCCCEEEEEECCCcEEEEeCC-CCcEEEe----ccC
Q 002407 587 DKTVRLWHLSS-KT--CLKIFSHS----------DYVTCIQFNPVDDRYFISGSLDAKVRIWSIP-ERQVVDW----NDL 648 (927)
Q Consensus 587 DgtV~lWDl~t-~~--~~~~~~h~----------~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~-t~~~v~~----~~~ 648 (927)
+++|.+|++.. +. .+..+.+. ..+.+++|+| +++++++...++.|.+|++. ++++... ...
T Consensus 107 ~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 185 (347)
T 3hfq_A 107 KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA 185 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT
T ss_pred CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC
Confidence 89999999963 33 33333322 2488999999 88866666678899999998 5654321 222
Q ss_pred CCcEEEEEECCCCCEEEEE-ECCCeEEEEECCC--CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcE
Q 002407 649 HEMVTAACYTPDGQGALVG-SYKGSCHLYNTSE--NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI 725 (927)
Q Consensus 649 ~~~V~sla~spdg~~l~tg-s~Dg~I~IwDl~~--~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I 725 (927)
...+..++|+|||++++++ ..++.|.+|++.. ++......+..... .......+..++|+|+++.++++...++.|
T Consensus 186 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~i~~spdG~~l~v~~~~~~~v 264 (347)
T 3hfq_A 186 GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPA-DYTAHNGAAAIRLSHDGHFLYVSNRGYNTL 264 (347)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCT-TCCSCCEEEEEEECTTSCEEEEEEETTTEE
T ss_pred CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCC-CCCCCCcceeEEECCCCCEEEEEeCCCCEE
Confidence 3468889999999976664 5678999999874 54432211111000 001124588999999998555677789999
Q ss_pred EEEECC---cceEEEEeecCCcceEEEEEecCCCEEEEEECC-CcEEEEECCC
Q 002407 726 RVVDGI---DLVHKFKGFRNTNSQISASLTANGRYVVSASED-SYVYVWKYEA 774 (927)
Q Consensus 726 ~VwD~~---~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D-g~I~IWdl~s 774 (927)
.+|+.. ..........+...+..++|+|||++|++++.+ +.|.+|+++.
T Consensus 265 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 265 AVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp EEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 999964 222222222234457789999999999888765 8899997653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-17 Score=181.53 Aligned_cols=276 Identities=11% Similarity=0.062 Sum_probs=184.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEEC-CCcEEEEeCCCCcE-EEeccCCCcEEE-
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSL-DAKVRIWSIPERQV-VDWNDLHEMVTA- 654 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~-Dg~I~IWDl~t~~~-v~~~~~~~~V~s- 654 (927)
..+++.+.++.|++||+.+++.+..+. +...+ .++|+| ++++|++++. ++.|.+||+.++++ ............
T Consensus 11 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (331)
T 3u4y_A 11 FGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITS-DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD 88 (331)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECS-SSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC
T ss_pred EEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcC-CCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc
Confidence 347788889999999999999988777 45556 999999 8887666665 88999999999886 555555555555
Q ss_pred EEECCCCCEEEEEECCC---eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc-EEEEEC
Q 002407 655 ACYTPDGQGALVGSYKG---SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR-IRVVDG 730 (927)
Q Consensus 655 la~spdg~~l~tgs~Dg---~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~-I~VwD~ 730 (927)
++|+|+|++|+++..++ .|.+||+.+++....+. ......+++|+|+++.++++...++. |.+|+.
T Consensus 89 ~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~----------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 89 VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP----------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKI 158 (331)
T ss_dssp EEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE----------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred eEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE----------CCCCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence 99999999999665553 89999999988766532 33456899999999866666677788 999995
Q ss_pred Cc---ceEE-EEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecC
Q 002407 731 ID---LVHK-FKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWP 805 (927)
Q Consensus 731 ~~---~~~~-~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~ 805 (927)
.. .... ............++|+|+|++|+.++ .++.|++||+.++...... .. +..
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~------~~------------~~~- 219 (331)
T 3u4y_A 159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLL------NA------------VGT- 219 (331)
T ss_dssp CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEE------EE------------EEC-
T ss_pred CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccccee------ee------------ccC-
Confidence 42 2111 12223345578999999999765555 6889999999865431000 00 000
Q ss_pred CceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccc--c--c
Q 002407 806 GVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLT--A--R 881 (927)
Q Consensus 806 g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~--~--~ 881 (927)
+ .....++|+|+|++|+.+. ..+..+.+|+.+..... . .
T Consensus 220 --------------------~--------------~~~~~~~~spdg~~l~v~~---~~~~~i~~~d~~~~~~~~~~~~~ 262 (331)
T 3u4y_A 220 --------------------N--------------NLPGTIVVSRDGSTVYVLT---ESTVDVFNFNQLSGTLSFVKSFG 262 (331)
T ss_dssp --------------------S--------------SCCCCEEECTTSSEEEEEC---SSEEEEEEEETTTTEEEEEEEEE
T ss_pred --------------------C--------------CCCceEEECCCCCEEEEEE---cCCCEEEEEECCCCceeeecccc
Confidence 0 0012245899999877654 23455777876533220 0 0
Q ss_pred cCCCceecccCCCCCcccCCCCCEEE-EEcCCCcEEEeecCC
Q 002407 882 NRSPRTSLDISNGISSSISAWGMVIV-TAGLRGEIRAYQNFG 922 (927)
Q Consensus 882 ~~s~v~s~~~~~~~~~a~S~dG~vLv-Tgs~DG~IrvW~~~g 922 (927)
...............++|+|||++|+ ++..++.|++|+.-+
T Consensus 263 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 263 HGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp CCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred cccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 00000000000001469999999875 555678999999544
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=212.93 Aligned_cols=319 Identities=8% Similarity=0.032 Sum_probs=207.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccccc
Q 002407 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (927)
Q Consensus 458 ~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~ 537 (927)
.+.+++|+|||+++++ +.||+|++||+.+++....+... ......+..++|+||+..++.+..+.........
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~--~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~---- 90 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGK--KIESLRAIRYEISPDREYALFSYNVEPIYQHSYT---- 90 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTT--TTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCC----
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccc--cccccccceEEECCCCCEEEEEecCccceeecce----
Confidence 4678999999998877 78999999999988765443211 1111247789999999998887554322100000
Q ss_pred ccccccCcccccceEeecCCCceEEEc---cCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCce--
Q 002407 538 RKSLSLDHMVVPETVFALSDKPICSFQ---GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYV-- 610 (927)
Q Consensus 538 ~~~~~~~~~~~~~~v~~~s~k~i~~l~---gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V-- 610 (927)
....+|++.......+. +|...+..++|+|+ ..|+.++. +.|++||+.+++...... +...+
T Consensus 91 ----------~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~ 159 (723)
T 1xfd_A 91 ----------GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIY 159 (723)
T ss_dssp ----------SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEE
T ss_pred ----------eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceE
Confidence 01134554443333333 45556889999999 56777775 899999999988877665 33333
Q ss_pred ----------------EEEEEccCCCCEEEEEECCC----------------------------------cEEEEeCCCC
Q 002407 611 ----------------TCIQFNPVDDRYFISGSLDA----------------------------------KVRIWSIPER 640 (927)
Q Consensus 611 ----------------~~v~fsp~dg~~L~sgs~Dg----------------------------------~I~IWDl~t~ 640 (927)
.+++|+| ++++|++++.|+ .|++||+.++
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~ 238 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP 238 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred CcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence 7899999 999999887653 7999999988
Q ss_pred cE-EEeccC------CCcEEEEEECCCCCEEEEEECC----CeEEEEECCCCeeeeecccccccccccCCCCCe----EE
Q 002407 641 QV-VDWNDL------HEMVTAACYTPDGQGALVGSYK----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI----TG 705 (927)
Q Consensus 641 ~~-v~~~~~------~~~V~sla~spdg~~l~tgs~D----g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V----ts 705 (927)
+. ..+..+ ...+..++|+|||++|++.... ..|++||+.+++....... .+...+ ..
T Consensus 239 ~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--------~~~~~~~~~~~~ 310 (723)
T 1xfd_A 239 THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED--------ESEAWLHRQNEE 310 (723)
T ss_dssp CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE--------ECSSCCCCCCCC
T ss_pred ceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe--------ccCCEEeccCCC
Confidence 75 333322 4578999999999988776543 5799999998876544321 122222 36
Q ss_pred EEEcCCCCcEEEE-EECCC------cEEEEE-CCc-c---eEEEEeecCCcceEE-EEEecCCCEEEEEECC---CcEEE
Q 002407 706 FQFAPGSSSEVLV-TSADS------RIRVVD-GID-L---VHKFKGFRNTNSQIS-ASLTANGRYVVSASED---SYVYV 769 (927)
Q Consensus 706 l~fspdg~~~Lls-gs~Dg------~I~VwD-~~~-~---~~~~~~~~~~~~v~s-v~fspdg~~Lasgs~D---g~I~I 769 (927)
++|+|+|+.++++ +..++ .|.+|| ... . ...+. .....+.. ++|+|||++|+..+.+ +.++|
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee--cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 7999999865555 55677 577787 222 1 22222 12233444 6899999999877655 78999
Q ss_pred EECCCCC--Ccccccc---cceeeeeeeecCCCeEEEEecC
Q 002407 770 WKYEAES--RPSRSKS---ITVTHSYEHFHCQDVSVAIPWP 805 (927)
Q Consensus 770 Wdl~s~~--~~~~~~~---~~~~~~~~~~~~~~v~vavs~~ 805 (927)
|++.... ....... .........|.+++..+++...
T Consensus 389 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 389 YSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp EEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred EEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 9987543 1222211 1111233456666665565443
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-17 Score=182.00 Aligned_cols=269 Identities=10% Similarity=0.089 Sum_probs=197.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeC-------CCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeec-ccccCCc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGE-------DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLS-PKHLDNH 526 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~-------DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la-~~~~~~~ 526 (927)
....+..++|+|+|++|++++. ++.|.+||..+++....+... .....+.+++++..+. +...++.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND------LKPFGATINNTTQTLWFGNTVNSA 112 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES------SCCCSEEEETTTTEEEEEETTTTE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC------CCcceEEECCCCCEEEEEecCCCE
Confidence 3456889999999999988874 568999999988766665321 1234567788887444 3333344
Q ss_pred eeeecccccccccccccCcccccceEeec-CCCceEEEccCCC---------CEEEEEecCC-cEEEEEe--CCCcEEEE
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLD---------DVLDLSWSKS-QHLLSSS--MDKTVRLW 593 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~---------~V~~l~~spd-~~L~Sgs--~DgtV~lW 593 (927)
+. +++. +++.+..+..+.. .+.+++|+|+ +++++++ .++.|.+|
T Consensus 113 v~-----------------------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~ 169 (353)
T 3vgz_A 113 VT-----------------------AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVV 169 (353)
T ss_dssp EE-----------------------EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEE
T ss_pred EE-----------------------EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEE
Confidence 42 2332 2344444444332 2788999998 5666665 47899999
Q ss_pred eCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC-----CCcEEEEEECCCCCEEEEE
Q 002407 594 HLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-----HEMVTAACYTPDGQGALVG 667 (927)
Q Consensus 594 Dl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~-----~~~V~sla~spdg~~l~tg 667 (927)
|+.+++.+..+. +...+.+++|+| ++++|+++..++.|.+||+.+++.+..... ...+..++|+|++++++++
T Consensus 170 d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 170 DGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp ETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred cCCCCceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence 999999998888 667789999999 999999999999999999999988765443 4468889999999988777
Q ss_pred ECC-CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcce
Q 002407 668 SYK-GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQ 746 (927)
Q Consensus 668 s~D-g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v 746 (927)
+.+ +.|.+||+.+++....... .. ...++|+|++..++++...++.|.+||........... ....+
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~--------~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~ 316 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAA--------PE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD-TPTHP 316 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEEC--------SS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE-CCSEE
T ss_pred eCCCCEEEEEECCCCcEEEEEEc--------CC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe-cCCCC
Confidence 654 8999999999887766542 11 24689999998555555579999999975543332222 23467
Q ss_pred EEEEEecCCCEEEEEECCC
Q 002407 747 ISASLTANGRYVVSASEDS 765 (927)
Q Consensus 747 ~sv~fspdg~~Lasgs~Dg 765 (927)
..++|+|+|++|+.+..++
T Consensus 317 ~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 317 NSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEECTTSCEEEEEEECC
T ss_pred CeEEEcCCCCEEEEEEccc
Confidence 8999999999887776654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-18 Score=203.99 Aligned_cols=271 Identities=9% Similarity=0.054 Sum_probs=195.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeeccccc---CCceeee
Q 002407 455 HNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL---DNHLEKK 530 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~-DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~---~~~i~~~ 530 (927)
+..+|++++|+|||++||+++. ||+++||++..++. ..+. ..+...+..+.|+|+ .++++... +.....
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt----~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l- 92 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLN----REPINSVLDPHYGVG-RVILVRDVSKGAEQHAL- 92 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECC----SSCCSEECEECTTCS-EEEEEEECSTTSCCEEE-
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-Eeee----cccccccccccCCCC-eEEEEeccCCCCcceEE-
Confidence 3567999999999999999887 99999999855543 2221 222256778999999 66655432 111110
Q ss_pred cccccccccccccCcccccceEeec--CCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEec
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSH 606 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~--s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~h 606 (927)
..+.. .+... .+..+. .+...+|+|+ +.+++...++.+.+||+.+++......+
T Consensus 93 --------------------~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~ 150 (582)
T 3o4h_A 93 --------------------FKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL 150 (582)
T ss_dssp --------------------EEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred --------------------EEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC
Confidence 11122 22222 222222 2335577776 4555555555666999999987777665
Q ss_pred CCceEEEEEccCCCCEEEEEECC----CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCC--eEEEEECCC
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLD----AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKG--SCHLYNTSE 680 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~D----g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg--~I~IwDl~~ 680 (927)
.. .+++|+| ++++|++++.+ ..|++||+.+++...+..+...+..++|+|||++|+++..++ .|++||+.+
T Consensus 151 ~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 151 PG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD 227 (582)
T ss_dssp SS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT
T ss_pred CC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC
Confidence 55 8999999 99999988877 779999999998888877888899999999999999888888 899999998
Q ss_pred CeeeeecccccccccccCCCCCeEEEE--------EcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEe
Q 002407 681 NKLQQKSPINLQNKKKRSHQRKITGFQ--------FAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLT 752 (927)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~--------fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fs 752 (927)
++.. .. ..+...+..++ |+|++ .++++++.++.++||+. . .... .....+.+++|+
T Consensus 228 ~~~~-~~---------~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~-g--~~~~--~~~~~v~~~~~s 291 (582)
T 3o4h_A 228 GSVE-DL---------ELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID-G--ERVE--APQGNHGRVVLW 291 (582)
T ss_dssp CCEE-EC---------CCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET-T--EEEC--CCSSEEEEEEEE
T ss_pred CcEE-Ec---------cCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE-C--Ceec--cCCCceEEEEec
Confidence 8766 32 24444555555 99999 68999999999999998 2 1111 234567889999
Q ss_pred cCCCEEEEEECCCc---EEEEECCC
Q 002407 753 ANGRYVVSASEDSY---VYVWKYEA 774 (927)
Q Consensus 753 pdg~~Lasgs~Dg~---I~IWdl~s 774 (927)
+++++++++.+.. |++|++.+
T Consensus 292 -dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 292 -RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp -TTEEEEEEEETTEEEEEEEETTCC
T ss_pred -CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 9999999887754 67776653
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.2e-18 Score=205.34 Aligned_cols=197 Identities=8% Similarity=0.106 Sum_probs=151.1
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-----C
Q 002407 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-----R 640 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-----~ 640 (927)
+...|.+++|+|++.++.+ .+++|++||+.+++......+...+.+++|+| ++++|+++ .++.|++||+.+ +
T Consensus 80 ~~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 80 DAFPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp --CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred cccCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCC
Confidence 3457899999999666655 46999999999998877777888899999999 99999885 679999999998 8
Q ss_pred cEEEeccCCCc---------------EEEEEECCCCCEEEEEE---------------------------------CCCe
Q 002407 641 QVVDWNDLHEM---------------VTAACYTPDGQGALVGS---------------------------------YKGS 672 (927)
Q Consensus 641 ~~v~~~~~~~~---------------V~sla~spdg~~l~tgs---------------------------------~Dg~ 672 (927)
+.......... +.+++|+|||++|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 77665443332 48899999999999987 4467
Q ss_pred EEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC-----cEEEEECCcc--eEEEEeecCCc-
Q 002407 673 CHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS-----RIRVVDGIDL--VHKFKGFRNTN- 744 (927)
Q Consensus 673 I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg-----~I~VwD~~~~--~~~~~~~~~~~- 744 (927)
|++||+.+++...... ...+...+..++|+|+++ .|++++.++ .|++||.... ...+.......
T Consensus 237 l~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~ 308 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQT-------GEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHY 308 (706)
T ss_dssp EEEEETTTTEEEECCC-------CSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSC
T ss_pred EEEEECCCCceEeecc-------CCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCe
Confidence 9999999887654321 124567799999999997 677766665 8999996543 22222222222
Q ss_pred --ceEEEEEec--CCCEEEEEECCCcEEEEECC
Q 002407 745 --SQISASLTA--NGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 745 --~v~sv~fsp--dg~~Lasgs~Dg~I~IWdl~ 773 (927)
.+..++|+| ||++|+++..|+.++||.+.
T Consensus 309 ~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 309 VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred ECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 235689999 99999999999999999886
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.2e-17 Score=178.06 Aligned_cols=202 Identities=16% Similarity=0.176 Sum_probs=148.5
Q ss_pred CCCCEEEEEecCC-cEEEEEeCC-CcEEEEeCC--CCcE--EEEEecCCceEEEEEccCCCCEEEEEEC-CCcEEEEeC-
Q 002407 566 HLDDVLDLSWSKS-QHLLSSSMD-KTVRLWHLS--SKTC--LKIFSHSDYVTCIQFNPVDDRYFISGSL-DAKVRIWSI- 637 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~Sgs~D-gtV~lWDl~--t~~~--~~~~~h~~~V~~v~fsp~dg~~L~sgs~-Dg~I~IWDl- 637 (927)
|...+.+++|+|+ .+|++++.+ +.|++|++. +++. +..+.....+..++|+| ++++|++++. ++.|.+||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcC-CCCEEEEEecCCCeEEEEECC
Confidence 5567788999999 568888876 999999998 5553 34455455889999999 8888776665 788999999
Q ss_pred --CCCcEEEeccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCC-Ceeeeec--ccccccccccCCCCCeEEEEEcCC
Q 002407 638 --PERQVVDWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSE-NKLQQKS--PINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 638 --~t~~~v~~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~-~~~~~~~--~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
...+.+........+..++|+|++++|++++ .++.|.+||+.+ ++..... ... ......+..++|+|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~pd 188 (343)
T 1ri6_A 115 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT------TVEGAGPRHMVFHPN 188 (343)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE------CSTTCCEEEEEECTT
T ss_pred CCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc------cCCCCCcceEEECCC
Confidence 4445555666667789999999999888887 899999999987 5543221 111 123457889999999
Q ss_pred CCcEEEEEECCCcEEEEECCc----c--eEEEEee----cCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCC
Q 002407 712 SSSEVLVTSADSRIRVVDGID----L--VHKFKGF----RNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEA 774 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD~~~----~--~~~~~~~----~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s 774 (927)
+..+++++..++.|.+|+... . ...+... .....+..++|+|+|++|+++. .++.|++|++..
T Consensus 189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 189 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 885555556899999999632 1 2222211 1123566899999999887554 789999999984
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-17 Score=172.35 Aligned_cols=261 Identities=11% Similarity=0.119 Sum_probs=167.6
Q ss_pred EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEEeccCC--CcEEEEEECC
Q 002407 583 SSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDWNDLH--EMVTAACYTP 659 (927)
Q Consensus 583 Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~~~~~~--~~V~sla~sp 659 (927)
..+.|++|++||+.+++......|...|.+++|+| ++++|++++ ++.|++||+.+ ++.......+ ..+.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 34678999999999999888888999999999999 999999887 78999999999 8777665443 6788999999
Q ss_pred CCCEEEEEEC--CC--eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC--Ccc
Q 002407 660 DGQGALVGSY--KG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDL 733 (927)
Q Consensus 660 dg~~l~tgs~--Dg--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~--~~~ 733 (927)
++++|++++. ++ .|.+|++.++..... .....+..++|+|++..+++++..++.++||+. ...
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGTPRLM-----------TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCCCEEC-----------CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCceEEe-----------ecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC
Confidence 9999999983 33 455555555443221 223348899999999865558889999999983 222
Q ss_pred eEEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCC-CCCcccccccceeeeeeeecCCCeEEEEe-cCCceeE
Q 002407 734 VHKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEA-ESRPSRSKSITVTHSYEHFHCQDVSVAIP-WPGVGDT 810 (927)
Q Consensus 734 ~~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s-~~~~~~~~~~~~~~~~~~~~~~~v~vavs-~~g~~~i 810 (927)
. ......+...+..++|+|+|++|+.++ .++.++||++.. ..................|++++..+++. .++....
T Consensus 164 ~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 242 (297)
T 2ojh_A 164 V-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFD 242 (297)
T ss_dssp C-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred c-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCc
Confidence 1 122333456789999999999888776 589999999863 33333332222222334444444333322 1110000
Q ss_pred E-eecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEec
Q 002407 811 W-GLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSAT 859 (927)
Q Consensus 811 ~-~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas 859 (927)
. ......+..|+........+..+.++. .....++|+|++++|++++
T Consensus 243 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~ 290 (297)
T 2ojh_A 243 HPRDLDVRVQLMDMDGGNVETLFDLFGGQ--GTMNSPNWSPDGDEFAYVR 290 (297)
T ss_dssp CCSSEEEEEEEEETTSCSCEEEEEEEEST--TTSCSCCBCTTSSEEEEEE
T ss_pred ccccCceEEEEEecCCCCceeeeccCCCC--cccccceECCCCCEEEEEE
Confidence 0 000022333333332222222111111 1233456999999999876
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.1e-16 Score=173.26 Aligned_cols=269 Identities=10% Similarity=0.166 Sum_probs=177.8
Q ss_pred CceEEEEecc--CcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEecCcCcccceeecccccCc
Q 002407 429 ERVRVRQYGK--SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED----CVIHVWQVVESERKGELLEKQEDGH 502 (927)
Q Consensus 429 ~~~~V~i~~~--~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~D----gtVrVWdv~~~~~~~~l~~~~~~~~ 502 (927)
.+..|.+|.. .++++..+. .+ |...+..|+|+|||++|++++.+ +.|.+|++.......+
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~---~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~--------- 90 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLS---DA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH--------- 90 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEE---EE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE---------
T ss_pred CCCCEEEEEEeCCCCCEEEee---cc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE---------
Confidence 3456666654 445444332 22 77788899999999999999886 7999999865310000
Q ss_pred cccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEE
Q 002407 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLL 582 (927)
Q Consensus 503 ~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~ 582 (927)
.+..+..+......+++ ..++|+
T Consensus 91 --------------------------------------------------------~~~~~~~~~~~p~~~~~-dg~~l~ 113 (361)
T 3scy_A 91 --------------------------------------------------------LLNTQKTMGADPCYLTT-NGKNIV 113 (361)
T ss_dssp --------------------------------------------------------EEEEEECSSSCEEEEEE-CSSEEE
T ss_pred --------------------------------------------------------EeeEeccCCCCcEEEEE-CCCEEE
Confidence 11122223445666777 336666
Q ss_pred EEe-CCCcEEEEeCCCCcEEE----EEec-----------CCceEEEEEccCCCCEEEEEE-CCCcEEEEeCCCCc----
Q 002407 583 SSS-MDKTVRLWHLSSKTCLK----IFSH-----------SDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPERQ---- 641 (927)
Q Consensus 583 Sgs-~DgtV~lWDl~t~~~~~----~~~h-----------~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~t~~---- 641 (927)
+++ .++.|.+|++.....+. .+.+ ...+.+++|+| ++++|+++. .++.|.+|++....
T Consensus 114 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~ 192 (361)
T 3scy_A 114 TANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADN 192 (361)
T ss_dssp EEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTT
T ss_pred EEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCccc
Confidence 665 68899999997543221 1122 23458899999 998766655 47899999887533
Q ss_pred ---E-------EEeccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 642 ---V-------VDWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 642 ---~-------v~~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
+ .........+..++|+|+|+++++++ .++.|.+|++.++.+.....+.. ...+...+..++|+|
T Consensus 193 ~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~----~~~~~~~~~~i~~sp 268 (361)
T 3scy_A 193 KEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA----DTVNAQGSGDIHLSP 268 (361)
T ss_dssp CCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEES----CSSCCCCEEEEEECT
T ss_pred ccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEec----CCCCCCCcccEEECC
Confidence 1 22334456788999999999888877 58999999998776533322211 123345578999999
Q ss_pred CCCcEEEEEE-C-CCcEEEEECC--c-ceEEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCC
Q 002407 711 GSSSEVLVTS-A-DSRIRVVDGI--D-LVHKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEA 774 (927)
Q Consensus 711 dg~~~Llsgs-~-Dg~I~VwD~~--~-~~~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s 774 (927)
+++ +|+++. . ++.|.+|+.. . .............+..++|+|||++|++++ .++.|.+|+++.
T Consensus 269 dg~-~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 269 DGK-YLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp TSS-EEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CCC-EEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 998 454544 4 5899999963 1 222222222244577899999999998888 678899987753
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-17 Score=201.03 Aligned_cols=294 Identities=12% Similarity=0.104 Sum_probs=191.6
Q ss_pred cCceEEEEeccCcccccceeeeeEeecCCC---CEEEEEEcCCCCEEEEEeCC---------CcEEEEecCcCcccceee
Q 002407 428 QERVRVRQYGKSCKDLTALYKCQEIQAHNG---SIWSIKFSLDGRYLASAGED---------CVIHVWQVVESERKGELL 495 (927)
Q Consensus 428 ~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~---~I~~vafSpdG~~LaSgs~D---------gtVrVWdv~~~~~~~~l~ 495 (927)
..++.|++|+..+++... .+.+|.. .|.+++|||||++||+++.+ +.|.|||+.+++. ..+.
T Consensus 34 ~~dg~i~~~d~~~g~~~~-----~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~ 107 (723)
T 1xfd_A 34 EQKGTVRLWNVETNTSTV-----LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLD 107 (723)
T ss_dssp CSSSCEEEBCGGGCCCEE-----EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECC
T ss_pred eCCCCEEEEECCCCcEEE-----EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-Eecc
Confidence 356689999988776543 3456665 49999999999999999875 7788999998764 2221
Q ss_pred cccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecC-CCceEEEccCCC------
Q 002407 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLD------ 568 (927)
Q Consensus 496 ~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~------ 568 (927)
....+...+..+.|+|++..++.... ..+. +++.. ++.......+..
T Consensus 108 --~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~-----------------------~~~~~~g~~~~~~~~~~~~~~~~g 161 (723)
T 1xfd_A 108 --PPEVSNAKLQYAGWGPKGQQLIFIFE-NNIY-----------------------YCAHVGKQAIRVVSTGKEGVIYNG 161 (723)
T ss_dssp --CTTCCSCCCSBCCBCSSTTCEEEEET-TEEE-----------------------EESSSSSCCEEEECCCBTTTEEEE
T ss_pred --CCccccccccccEECCCCCEEEEEEC-CeEE-----------------------EEECCCCceEEEecCCCCCceECc
Confidence 11233334678899999998888754 2332 22222 222222333222
Q ss_pred ------------CEEEEEecCC-cEEEEEeCCC----------------------------------cEEEEeCCCCcEE
Q 002407 569 ------------DVLDLSWSKS-QHLLSSSMDK----------------------------------TVRLWHLSSKTCL 601 (927)
Q Consensus 569 ------------~V~~l~~spd-~~L~Sgs~Dg----------------------------------tV~lWDl~t~~~~ 601 (927)
.+.+++|+|| .+|++++.|+ +|++||+.+++..
T Consensus 162 ~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~ 241 (723)
T 1xfd_A 162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD 241 (723)
T ss_dssp ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC
T ss_pred ccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee
Confidence 2378999999 6788777543 7999999998865
Q ss_pred EEEe-c------CCceEEEEEccCCCCEEEEEEC----CCcEEEEeCCCCcEEEecc--CCCcE----EEEEECCCCCEE
Q 002407 602 KIFS-H------SDYVTCIQFNPVDDRYFISGSL----DAKVRIWSIPERQVVDWND--LHEMV----TAACYTPDGQGA 664 (927)
Q Consensus 602 ~~~~-h------~~~V~~v~fsp~dg~~L~sgs~----Dg~I~IWDl~t~~~v~~~~--~~~~V----~sla~spdg~~l 664 (927)
..+. + ...+..++|+| ++++|++... +..|++||+.++++..... +...+ ..++|+|||+.|
T Consensus 242 ~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 320 (723)
T 1xfd_A 242 LEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF 320 (723)
T ss_dssp EECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred EEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeE
Confidence 5554 3 56799999999 9998877653 3569999999988765432 22333 378999999977
Q ss_pred EE--EECCC------eEEEEE-CCCCee--eeecccccccccccCCCCCeEE-EEEcCCCCcEEEEEECC--CcEEEEEC
Q 002407 665 LV--GSYKG------SCHLYN-TSENKL--QQKSPINLQNKKKRSHQRKITG-FQFAPGSSSEVLVTSAD--SRIRVVDG 730 (927)
Q Consensus 665 ~t--gs~Dg------~I~IwD-l~~~~~--~~~~~i~~~~~~~~~h~~~Vts-l~fspdg~~~Llsgs~D--g~I~VwD~ 730 (927)
+. +..++ .|++|| ..++.. ...+ ......+.. ++|+|+++.+++++..+ +.++||+.
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l---------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 321 FFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI---------TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp EEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS---------CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred EEEEecccCCCcceeEEEEEeccCCCCccceeEe---------ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 75 44566 567777 344330 2211 122334444 68999998444444444 78999984
Q ss_pred Cc----ceEEEEe-ecCCcceEEEEEecCCCEEEEEEC
Q 002407 731 ID----LVHKFKG-FRNTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 731 ~~----~~~~~~~-~~~~~~v~sv~fspdg~~Lasgs~ 763 (927)
.. ....+.. ..+...+..++|+|||++|+....
T Consensus 392 ~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 392 NTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp CSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred eCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 31 1111111 002445778999999998887543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-16 Score=184.23 Aligned_cols=168 Identities=13% Similarity=0.078 Sum_probs=127.7
Q ss_pred cCCCCEEEEEEcCCCCEEE----EEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 454 AHNGSIWSIKFSLDGRYLA----SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~La----Sgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
.|.+.|++|+|+|+|++|| +|+.|++|+|||+.+......- ...
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~----------------------------~~~---- 137 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQ----------------------------QKR---- 137 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCS----------------------------SCC----
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcC----------------------------Ccc----
Confidence 4778899999999999999 8889999999998653100000 000
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEE-ec
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIF-SH 606 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~-~h 606 (927)
.-..+..+.+|...|.+++|+|+ .+|++++.|++|++||+.++..+... .|
T Consensus 138 --------------------------~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~ 191 (434)
T 2oit_A 138 --------------------------PFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS 191 (434)
T ss_dssp --------------------------CSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred --------------------------eeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence 00112345679999999999996 67999999999999999998665443 48
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cC-------CCcEEEEEECCCCCEEEEE-ECCC------
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DL-------HEMVTAACYTPDGQGALVG-SYKG------ 671 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~-------~~~V~sla~spdg~~l~tg-s~Dg------ 671 (927)
...|++++|+| ++++|++|+.||.|++||++ ++..... .+ ...+.+++|++++.++++. ..+|
T Consensus 192 ~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~ 269 (434)
T 2oit_A 192 TVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSP 269 (434)
T ss_dssp GGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCC
T ss_pred CCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCC
Confidence 89999999999 89999999999999999998 4433322 11 2379999999988777553 3343
Q ss_pred eEEEEECCCC
Q 002407 672 SCHLYNTSEN 681 (927)
Q Consensus 672 ~I~IwDl~~~ 681 (927)
.+++|++...
T Consensus 270 ~v~i~~l~~~ 279 (434)
T 2oit_A 270 DVVMALLPKK 279 (434)
T ss_dssp EEEEEECCCT
T ss_pred ceEEEEeccC
Confidence 3899999865
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-16 Score=170.39 Aligned_cols=193 Identities=10% Similarity=0.014 Sum_probs=143.8
Q ss_pred EEEEEecCCc-EE-EEEeCCCcEEEEeCCCCcEEEEEecCC------ceEEEEEccCCCCEEEEEE------------CC
Q 002407 570 VLDLSWSKSQ-HL-LSSSMDKTVRLWHLSSKTCLKIFSHSD------YVTCIQFNPVDDRYFISGS------------LD 629 (927)
Q Consensus 570 V~~l~~spd~-~L-~Sgs~DgtV~lWDl~t~~~~~~~~h~~------~V~~v~fsp~dg~~L~sgs------------~D 629 (927)
+..++|+|++ ++ +++..++.|.+||+.+++.+..+.... .+..++|+| ++++|+++. .+
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccC
Confidence 5678999984 55 555668899999999999888776433 688999999 998888886 57
Q ss_pred CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc
Q 002407 630 AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 630 g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
+.|.+||+.+++.+........+..++|+|+|++|+++ ++.|++||+.+++....+... ..... +.|+
T Consensus 115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~-------~~~~~---~~~s 182 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQ-------SWEAE---TYAQ 182 (337)
T ss_dssp CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECST-------TTTTT---TBCC
T ss_pred ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecc-------ccCCC---ceeC
Confidence 99999999999888776667778899999999988888 689999999998876554321 11122 2678
Q ss_pred CCCCcEEEEEECCC-----------------------cEEEEECCcceE-EEEeecCCcceEEEEEecCCCEEEEEECCC
Q 002407 710 PGSSSEVLVTSADS-----------------------RIRVVDGIDLVH-KFKGFRNTNSQISASLTANGRYVVSASEDS 765 (927)
Q Consensus 710 pdg~~~Llsgs~Dg-----------------------~I~VwD~~~~~~-~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg 765 (927)
|++..+++++..++ .|.+||...... .+....+...+..++|+|+|++|+++ ++
T Consensus 183 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~ 260 (337)
T 1pby_B 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YN 260 (337)
T ss_dssp CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ES
T ss_pred CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CC
Confidence 88764333332333 468899654322 23333344567789999999999988 78
Q ss_pred cEEEEECCCCCC
Q 002407 766 YVYVWKYEAESR 777 (927)
Q Consensus 766 ~I~IWdl~s~~~ 777 (927)
.|++||+.+++.
T Consensus 261 ~v~~~d~~~~~~ 272 (337)
T 1pby_B 261 VLESFDLEKNAS 272 (337)
T ss_dssp EEEEEETTTTEE
T ss_pred eEEEEECCCCcC
Confidence 999999987654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=175.17 Aligned_cols=241 Identities=10% Similarity=-0.004 Sum_probs=171.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccc
Q 002407 461 SIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKS 540 (927)
Q Consensus 461 ~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~ 540 (927)
.+++++++.++++++.++.|++||+.+++....+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~--------------------------------------------- 38 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV--------------------------------------------- 38 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEE---------------------------------------------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEe---------------------------------------------
Confidence 46788899999999999999999998765433221
Q ss_pred cccCcccccceEeecCCCceEEEccCCCCEEEEEecCCc-EE-EEEeCCCcEEEEeCCCCcEEEEEecC-------CceE
Q 002407 541 LSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ-HL-LSSSMDKTVRLWHLSSKTCLKIFSHS-------DYVT 611 (927)
Q Consensus 541 ~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~-~L-~Sgs~DgtV~lWDl~t~~~~~~~~h~-------~~V~ 611 (927)
.+....+..++|+|++ ++ ++...++.|.+||+.+++.+..+... ..+.
T Consensus 39 -----------------------~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~ 95 (349)
T 1jmx_B 39 -----------------------MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY 95 (349)
T ss_dssp -----------------------CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS
T ss_pred -----------------------cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccccccc
Confidence 0011135678899984 44 45567899999999999988777632 2378
Q ss_pred EEEEccCCCCEEEEEECC------------CcEEEEeCCCCc---EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEE
Q 002407 612 CIQFNPVDDRYFISGSLD------------AKVRIWSIPERQ---VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676 (927)
Q Consensus 612 ~v~fsp~dg~~L~sgs~D------------g~I~IWDl~t~~---~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~Iw 676 (927)
.++|+| ++++|++++.+ +.|.+||+.+++ .+....++..+.+++|+|+|+ +++++ +.|.+|
T Consensus 96 ~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~ 171 (349)
T 1jmx_B 96 SFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKM 171 (349)
T ss_dssp CEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEE
T ss_pred ceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEE
Confidence 999999 99999988865 899999998843 333444556788999999999 66654 349999
Q ss_pred ECCCCeeeeeccccccccc-----------------------------------------------------------cc
Q 002407 677 NTSENKLQQKSPINLQNKK-----------------------------------------------------------KR 697 (927)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~-----------------------------------------------------------~~ 697 (927)
|+.+++....+........ ..
T Consensus 172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
T 1jmx_B 172 DVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 251 (349)
T ss_dssp CTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE
T ss_pred eCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc
Confidence 9998887655432210000 00
Q ss_pred CCCCCeEEEEEcC-CCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 698 SHQRKITGFQFAP-GSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 698 ~h~~~Vtsl~fsp-dg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
.+...+..++|+| ++. +++++ ++.|.+||........... ....+..++|+|+|++|++++.++.|++||+.+.+
T Consensus 252 ~~~~~~~~~~~sp~dg~-~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 252 DLTELYFTGLRSPKDPN-QIYGV--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp ECSSCEEEEEECSSCTT-EEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred cCCCcceeeEecCCCCC-EEEEE--cCeEEEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 0112456788889 887 55555 8899999976543322221 23346789999999999888889999999998754
Q ss_pred C
Q 002407 777 R 777 (927)
Q Consensus 777 ~ 777 (927)
.
T Consensus 328 ~ 328 (349)
T 1jmx_B 328 K 328 (349)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-15 Score=166.25 Aligned_cols=202 Identities=10% Similarity=0.048 Sum_probs=157.3
Q ss_pred CCCCEEEEEecCC-cEEEEEeC-------CCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEE-EEECCCcEEEEe
Q 002407 566 HLDDVLDLSWSKS-QHLLSSSM-------DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SGSLDAKVRIWS 636 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~Sgs~-------DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~-sgs~Dg~I~IWD 636 (927)
....+..++|+|+ ++|++++. ++.|.+||..+++.+..+.....+..++|+| ++++++ +...++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINN-TTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEET-TTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECC-CCCEEEEEecCCCEEEEEe
Confidence 3456889999999 67777664 5689999999999999988777789999999 887554 555579999999
Q ss_pred CCCCcEEEeccCCC----------cEEEEEECCCCCEEEEEE--CCCeEEEEECCCCeeeeecccccccccccCCCCCeE
Q 002407 637 IPERQVVDWNDLHE----------MVTAACYTPDGQGALVGS--YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704 (927)
Q Consensus 637 l~t~~~v~~~~~~~----------~V~sla~spdg~~l~tgs--~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt 704 (927)
+.+++.+....... .+..++|+|+|++++++. .++.|.+||+.+++....+. .+...+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~---------~~~~~~~ 188 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ---------NTGKMST 188 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC---------CCCTTCC
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec---------CCCCccc
Confidence 99998876554432 278899999999888876 47889999999988776542 2344578
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeec----CCcceEEEEEecCCCEEEEEEC-CCcEEEEECCCCCCc
Q 002407 705 GFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFR----NTNSQISASLTANGRYVVSASE-DSYVYVWKYEAESRP 778 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~----~~~~v~sv~fspdg~~Lasgs~-Dg~I~IWdl~s~~~~ 778 (927)
+++|+|++. .|+++..++.|.+||............ ....+..++|+|++++|++++. ++.|++||+.+++..
T Consensus 189 ~~~~s~dg~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 189 GLALDSEGK-RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL 266 (353)
T ss_dssp CCEEETTTT-EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE
T ss_pred eEEECCCCC-EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 899999987 688888899999999765433322221 3445778999999998877765 489999999886643
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-16 Score=183.04 Aligned_cols=206 Identities=16% Similarity=0.156 Sum_probs=142.5
Q ss_pred cCCCCEEEEEecCC-cEEE----EEeCCCcEEEEeCCCC--------cE---EEEEe-cCCceEEEEEccCCCCEEEEEE
Q 002407 565 GHLDDVLDLSWSKS-QHLL----SSSMDKTVRLWHLSSK--------TC---LKIFS-HSDYVTCIQFNPVDDRYFISGS 627 (927)
Q Consensus 565 gH~~~V~~l~~spd-~~L~----Sgs~DgtV~lWDl~t~--------~~---~~~~~-h~~~V~~v~fsp~dg~~L~sgs 627 (927)
.|...|++++|+|+ .+|+ +++.|++|+|||+.++ +. +..+. |...|.+++|+|.++++|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 36778999999999 6677 7888999999998754 22 23333 8999999999994489999999
Q ss_pred CCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEE
Q 002407 628 LDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGF 706 (927)
Q Consensus 628 ~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl 706 (927)
.||+|++||++++..+. ...+...|.+++|+|+|++|++|+.||.|++||++ ++....+.... .....|...|.++
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~--~~~~~~~~~v~~v 246 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPP--FYESDHPVRVLDV 246 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCT--TCCTTSCEEEEEE
T ss_pred CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCc--ccCCCCceeEEEE
Confidence 99999999999886553 44567799999999999999999999999999998 44433332111 0011244589999
Q ss_pred EEcCCCCcEEEEEECCCc------EEEEECCcc----eEEEEee--------cCCcceEEEEEecCCCEEEEEEC-CCcE
Q 002407 707 QFAPGSSSEVLVTSADSR------IRVVDGIDL----VHKFKGF--------RNTNSQISASLTANGRYVVSASE-DSYV 767 (927)
Q Consensus 707 ~fspdg~~~Llsgs~Dg~------I~VwD~~~~----~~~~~~~--------~~~~~v~sv~fspdg~~Lasgs~-Dg~I 767 (927)
+|++++..+++....+|. +++|+..+. ...+..+ ....+...+.+-++.+++++++. .+.|
T Consensus 247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv 326 (434)
T 2oit_A 247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEV 326 (434)
T ss_dssp EEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBC
T ss_pred EEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCce
Confidence 999976533333445543 889996532 1122211 11222233444477777666654 4446
Q ss_pred EEEECC
Q 002407 768 YVWKYE 773 (927)
Q Consensus 768 ~IWdl~ 773 (927)
.|....
T Consensus 327 ~vl~~~ 332 (434)
T 2oit_A 327 SILARQ 332 (434)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 666643
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-15 Score=170.15 Aligned_cols=250 Identities=11% Similarity=0.073 Sum_probs=162.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC-cCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV-ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~-~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
+...+..++|+|||++|++++.+ .|.+|++. +++......
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~-------------------------------------- 78 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS-------------------------------------- 78 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE--------------------------------------
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE--------------------------------------
Confidence 44568899999999999999988 99999986 443211100
Q ss_pred ccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcE---EEEEe-------------CCCcEEEEeCC-
Q 002407 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQH---LLSSS-------------MDKTVRLWHLS- 596 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~---L~Sgs-------------~DgtV~lWDl~- 596 (927)
...+ +.+..++|+|++. ++++. .++++.+|++.
T Consensus 79 -----------------------------~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~ 128 (365)
T 1jof_A 79 -----------------------------HPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSE 128 (365)
T ss_dssp -----------------------------EECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECT
T ss_pred -----------------------------eecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCC
Confidence 0000 0122356667643 23332 68899999997
Q ss_pred CCcEEEEEe-----cCCceEEEEEccCCCCEEEEEEC-CCcEEEEeCC-CCcEEE--ecc---CCCcEEEEEECCCCCEE
Q 002407 597 SKTCLKIFS-----HSDYVTCIQFNPVDDRYFISGSL-DAKVRIWSIP-ERQVVD--WND---LHEMVTAACYTPDGQGA 664 (927)
Q Consensus 597 t~~~~~~~~-----h~~~V~~v~fsp~dg~~L~sgs~-Dg~I~IWDl~-t~~~v~--~~~---~~~~V~sla~spdg~~l 664 (927)
.++....+. +...+.+++|+| ++++|+++.. ++.|++|++. ++++.. ... +...+..++|+|+|++|
T Consensus 129 ~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l 207 (365)
T 1jof_A 129 TGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYL 207 (365)
T ss_dssp TCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEE
T ss_pred CCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEE
Confidence 466544333 456799999999 9998887764 6789999998 776532 222 24579999999999999
Q ss_pred EEEEC-CCeEEEEECC--CCeeeee-cccccccccccCCCC------CeEEEE-EcCCCCcEEEEEEC-CC-----cEEE
Q 002407 665 LVGSY-KGSCHLYNTS--ENKLQQK-SPINLQNKKKRSHQR------KITGFQ-FAPGSSSEVLVTSA-DS-----RIRV 727 (927)
Q Consensus 665 ~tgs~-Dg~I~IwDl~--~~~~~~~-~~i~~~~~~~~~h~~------~Vtsl~-fspdg~~~Llsgs~-Dg-----~I~V 727 (927)
+++.. ++.|.+|++. ++++... ..+.........+.. .+..++ |+|+++ +|+++.. +. .|.+
T Consensus 208 ~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~-~l~v~~~~~~~~~~~~i~v 286 (365)
T 1jof_A 208 YALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK-YMFASSRANKFELQGYIAG 286 (365)
T ss_dssp EEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS-EEEEEEEESSTTSCCEEEE
T ss_pred EEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC-EEEEECCCCCCCCCCeEEE
Confidence 88875 6899999875 4554321 001000000012222 588999 999998 4555443 33 8999
Q ss_pred EECC-c-ceEE-EE-eecCCcceEEEEEec---CCCEEEEEECC-CcEEEEECCCC
Q 002407 728 VDGI-D-LVHK-FK-GFRNTNSQISASLTA---NGRYVVSASED-SYVYVWKYEAE 775 (927)
Q Consensus 728 wD~~-~-~~~~-~~-~~~~~~~v~sv~fsp---dg~~Lasgs~D-g~I~IWdl~s~ 775 (927)
|+.. . .... .. ..........++|+| ||++|++++.+ +.|.||+++..
T Consensus 287 ~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 287 FKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 9853 2 1221 11 111233355788999 89999999865 89999999764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.8e-15 Score=162.48 Aligned_cols=202 Identities=16% Similarity=0.208 Sum_probs=141.3
Q ss_pred CCCCEEEEEecCCcEEEEEeC---CCcEEEEeCCCCcE--EEEE-ecCCceEEEEEccCCCCEEEEEE-CCCcEEEEeCC
Q 002407 566 HLDDVLDLSWSKSQHLLSSSM---DKTVRLWHLSSKTC--LKIF-SHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIP 638 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs~---DgtV~lWDl~t~~~--~~~~-~h~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~ 638 (927)
+...+..++|+|++.|++++. ++.|++|++.+++. +..+ .+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345567799999966776665 68999999987763 3332 3778899999999 999888887 67899999995
Q ss_pred -CCcE--EEeccCC----------CcEEEEEECCCCCEEEEEECCCeEEEEECC-CCeeeeecccccccccccCCCCCeE
Q 002407 639 -ERQV--VDWNDLH----------EMVTAACYTPDGQGALVGSYKGSCHLYNTS-ENKLQQKSPINLQNKKKRSHQRKIT 704 (927)
Q Consensus 639 -t~~~--v~~~~~~----------~~V~sla~spdg~~l~tgs~Dg~I~IwDl~-~~~~~~~~~i~~~~~~~~~h~~~Vt 704 (927)
++.. +...... ..+..++|+|+|+++++...++.|++|++. ++++.....+. ......+.
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~------~~~g~~p~ 190 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT------MEAGFGPR 190 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE------CCTTCCEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE------cCCCCCCc
Confidence 3332 2222221 248899999999966666668899999998 55443321111 12334678
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECC----cceE--EEEeecC----CcceEEEEEecCCCEE-EEEECCCcEEEEECC
Q 002407 705 GFQFAPGSSSEVLVTSADSRIRVVDGI----DLVH--KFKGFRN----TNSQISASLTANGRYV-VSASEDSYVYVWKYE 773 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I~VwD~~----~~~~--~~~~~~~----~~~v~sv~fspdg~~L-asgs~Dg~I~IWdl~ 773 (927)
.++|+|+++.++++...++.|.+|+.. .... .+..... ...+..++|+|||++| ++...++.|.+|++.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 899999998555556778999999843 2111 1221111 1347789999999987 455668999999997
Q ss_pred C
Q 002407 774 A 774 (927)
Q Consensus 774 s 774 (927)
.
T Consensus 271 ~ 271 (347)
T 3hfq_A 271 A 271 (347)
T ss_dssp G
T ss_pred C
Confidence 4
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=7.8e-14 Score=150.15 Aligned_cols=246 Identities=9% Similarity=0.110 Sum_probs=177.3
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
.+|-..+.+|+++++|+++++...++.|.+|+.. ++....+.. .+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~-----------------------~~----------- 70 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGE-----------------------CG----------- 70 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECC-----------------------BS-----------
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecc-----------------------cC-----------
Confidence 4567789999999999999988889999999975 322211100 00
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEe-cCCcEEEEEeC--CCcEEEEeCCCCcEEEEEe--cC
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW-SKSQHLLSSSM--DKTVRLWHLSSKTCLKIFS--HS 607 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~-spd~~L~Sgs~--DgtV~lWDl~t~~~~~~~~--h~ 607 (927)
...+|...+..+++ .+++.|+.+.. ++.|++|| .+++.+..+. +.
T Consensus 71 -----------------------------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~ 120 (286)
T 1q7f_A 71 -----------------------------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATIL 120 (286)
T ss_dssp -----------------------------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTC
T ss_pred -----------------------------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccC
Confidence 00134456788999 46677666664 89999999 5677777665 44
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec---cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN---DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~---~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
..+..|+++| +++++++...++.|.+||.. ++.+..+ .....+..++++++|+++++...++.|++||.... ..
T Consensus 121 ~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~ 197 (286)
T 1q7f_A 121 QHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YL 197 (286)
T ss_dssp SCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-EE
T ss_pred CCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-EE
Confidence 6789999999 88888887778999999965 4444433 23357899999999998777778899999998543 33
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC-cEEEEECC-cceEEEEeecCCcceEEEEEecCCCEEEEEE
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS-RIRVVDGI-DLVHKFKGFRNTNSQISASLTANGRYVVSAS 762 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg-~I~VwD~~-~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs 762 (927)
..+.. ..+...+.++++++++. ++++...++ .|.+||.. ..+..+........+..++++|+|+++++ +
T Consensus 198 ~~~~~-------~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~ 268 (286)
T 1q7f_A 198 RQIGG-------EGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-S 268 (286)
T ss_dssp EEESC-------TTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-E
T ss_pred EEEcc-------CCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-C
Confidence 33211 12336789999999885 666666675 99999954 34445544433445778999999987777 6
Q ss_pred CCCcEEEEECCCC
Q 002407 763 EDSYVYVWKYEAE 775 (927)
Q Consensus 763 ~Dg~I~IWdl~s~ 775 (927)
.|+.|++|++...
T Consensus 269 ~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 269 KDYRLYIYRYVQL 281 (286)
T ss_dssp TTTEEEEEECSCC
T ss_pred CCCeEEEEEcccc
Confidence 7999999998654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-16 Score=189.77 Aligned_cols=311 Identities=11% Similarity=0.076 Sum_probs=194.7
Q ss_pred CceEEEEeccCcccccceeeeeEeecCCC---CEEEEEEcCCCCEEEEEeC---------CCcEEEEecCcCcccceeec
Q 002407 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNG---SIWSIKFSLDGRYLASAGE---------DCVIHVWQVVESERKGELLE 496 (927)
Q Consensus 429 ~~~~V~i~~~~s~~l~~l~~~q~L~gH~~---~I~~vafSpdG~~LaSgs~---------DgtVrVWdv~~~~~~~~l~~ 496 (927)
.++.|++|+..+++...+ +.+|.. .|.+++|||||++||+++. |+.|++||+.+++.+....
T Consensus 34 ~d~~i~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~- 107 (719)
T 1z68_A 34 ADNNIVLYNIETGQSYTI-----LSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE- 107 (719)
T ss_dssp TTSCEEEEESSSCCEEEE-----ECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-
T ss_pred CCCCEEEEEcCCCcEEEE-----EccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-
Confidence 477899999887765433 244443 4899999999999999876 7899999999886521110
Q ss_pred ccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCE------
Q 002407 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV------ 570 (927)
Q Consensus 497 ~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V------ 570 (927)
....+..+.|+||+..|+... ++.+..+........ .+ ...+.....+.||...|
T Consensus 108 -----l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~-~l------------~~~~~~~~v~~g~~~~v~~ee~~ 168 (719)
T 1z68_A 108 -----LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF-QI------------TFNGRENKIFNGIPDWVYEEEML 168 (719)
T ss_dssp -----CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE-EC------------CCCCBTTTEEESSCCHHHHHHTT
T ss_pred -----cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE-EE------------ecCCCcCCeEcccccceeeeecc
Confidence 013466789999999998874 334433322110000 00 00011111222333222
Q ss_pred ---EEEEecCC-cEEEEEeCCC----------------------------------cEEEEeCCCCcEE---EEE-----
Q 002407 571 ---LDLSWSKS-QHLLSSSMDK----------------------------------TVRLWHLSSKTCL---KIF----- 604 (927)
Q Consensus 571 ---~~l~~spd-~~L~Sgs~Dg----------------------------------tV~lWDl~t~~~~---~~~----- 604 (927)
..++|+|| .+|++++.|. +|++||+.+++.. ...
T Consensus 169 ~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 248 (719)
T 1z68_A 169 ATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMI 248 (719)
T ss_dssp CSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHH
T ss_pred cCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccC
Confidence 58999999 6788877652 7899999988752 221
Q ss_pred -ecCCceEEEEEccCCCCEEEEEECCC----cEEEEe----CCCCcEEEec-----cCCCcEE-----EEEECCCCCEEE
Q 002407 605 -SHSDYVTCIQFNPVDDRYFISGSLDA----KVRIWS----IPERQVVDWN-----DLHEMVT-----AACYTPDGQGAL 665 (927)
Q Consensus 605 -~h~~~V~~v~fsp~dg~~L~sgs~Dg----~I~IWD----l~t~~~v~~~-----~~~~~V~-----sla~spdg~~l~ 665 (927)
.|...+..++|+| +++++++....+ .|.+|| +.++++.... .+...+. .+.|+|||+.|+
T Consensus 249 ~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 327 (719)
T 1z68_A 249 ASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYY 327 (719)
T ss_dssp HTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEE
T ss_pred CCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEE
Confidence 2677899999999 787777644332 488899 8777665544 3344555 789999999655
Q ss_pred E--EECCC--eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC----CCcEEEEECCc--c--
Q 002407 666 V--GSYKG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA----DSRIRVVDGID--L-- 733 (927)
Q Consensus 666 t--gs~Dg--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~----Dg~I~VwD~~~--~-- 733 (927)
. ...+| .|.+||+.+++... + ..+...+..+.+. ++..+++++.. ++.+++|.... .
T Consensus 328 ~~~~~~~g~~~l~~~~~~~~~~~~-l---------t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (719)
T 1z68_A 328 KIFSDKDGYKHIHYIKDTVENAIQ-I---------TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPP 396 (719)
T ss_dssp EEEECTTSCEEEEEESSCSTTCEE-C---------SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSC
T ss_pred EEEEccCCceEEEEEECCCCceEe-c---------ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCC
Confidence 4 44555 57777877665321 1 2344557777777 77644444443 48888887321 1
Q ss_pred -eEEEEe-e-cCCcceEEEEEecCCCEEEEE-ECC--CcEEEEECCCCC
Q 002407 734 -VHKFKG-F-RNTNSQISASLTANGRYVVSA-SED--SYVYVWKYEAES 776 (927)
Q Consensus 734 -~~~~~~-~-~~~~~v~sv~fspdg~~Lasg-s~D--g~I~IWdl~s~~ 776 (927)
...+.. . .+...+..+.|+|++++|+.. +.. ..+++|++.+++
T Consensus 397 ~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 397 SKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp CEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred CceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 122211 0 023456789999999877754 333 468899987765
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.5e-15 Score=164.30 Aligned_cols=290 Identities=14% Similarity=0.095 Sum_probs=182.9
Q ss_pred EeecCCCCEEE-----EEEcCCCCEEEEEeC-CCc--EEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccc
Q 002407 451 EIQAHNGSIWS-----IKFSLDGRYLASAGE-DCV--IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH 522 (927)
Q Consensus 451 ~L~gH~~~I~~-----vafSpdG~~LaSgs~-Dgt--VrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~ 522 (927)
.|..|...... .+|+|||++||.++. ++. |.+||+.+++..... ..+...+....|+|++..|+...
T Consensus 25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-----~~~~~~~~~~~~spdg~~l~~~~ 99 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-----EGRGDNTFGGFLSPDDDALFYVK 99 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-----CSSCBCSSSCEECTTSSEEEEEE
T ss_pred EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-----eCCCCCccceEEcCCCCEEEEEe
Confidence 34556665655 889999999999987 674 888888877644332 12222233456999999888876
Q ss_pred cCCceeeecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEe--cCCcEEEEE---------------
Q 002407 523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSW--SKSQHLLSS--------------- 584 (927)
Q Consensus 523 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~--spd~~L~Sg--------------- 584 (927)
.+..+. ++++. ++....+..+...+....| ++++.++.+
T Consensus 100 ~~~~l~-----------------------~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~ 156 (388)
T 3pe7_A 100 DGRNLM-----------------------RVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK 156 (388)
T ss_dssp TTTEEE-----------------------EEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred CCCeEE-----------------------EEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccc
Confidence 554332 22332 2233334444444544443 677443332
Q ss_pred --------eCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECC------CcEEEEeCCCCcEEEeccCC-
Q 002407 585 --------SMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD------AKVRIWSIPERQVVDWNDLH- 649 (927)
Q Consensus 585 --------s~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D------g~I~IWDl~t~~~v~~~~~~- 649 (927)
..+..|++||+.+++......+...+..++|+|.+++.|+....+ ..|.++|+..++........
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 236 (388)
T 3pe7_A 157 KFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE 236 (388)
T ss_dssp HHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT
T ss_pred hhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC
Confidence 245789999999998877777888899999999566777766653 37888898877766665555
Q ss_pred -CcEEEEEECCCCCEEEEEEC-CC----eEEEEECCCCeeeeecccccccccccCCC-CCeEEEEEcCCCCcEEEEE---
Q 002407 650 -EMVTAACYTPDGQGALVGSY-KG----SCHLYNTSENKLQQKSPINLQNKKKRSHQ-RKITGFQFAPGSSSEVLVT--- 719 (927)
Q Consensus 650 -~~V~sla~spdg~~l~tgs~-Dg----~I~IwDl~~~~~~~~~~i~~~~~~~~~h~-~~Vtsl~fspdg~~~Llsg--- 719 (927)
..+..++|+|||+.|+..+. ++ .|++||+.+++.......... .+. .....+.|+|+|..++++.
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-----~~~~~~~~~~~~spdg~~l~~~~~~~ 311 (388)
T 3pe7_A 237 GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC-----SHLMSNYDGSLMVGDGSDAPVDVQDD 311 (388)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE-----EEEEECTTSSEEEEEECCC-------
T ss_pred CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc-----eeeeecCCCCeEccCCCcceeEeeec
Confidence 35788999999997765443 22 399999998875433221100 000 0011236899988544433
Q ss_pred -----ECCCcEEEEECCcc-eEEEEeecCC---------cceEEEEEecCCCEEEEEE-CCCcEEEEECC
Q 002407 720 -----SADSRIRVVDGIDL-VHKFKGFRNT---------NSQISASLTANGRYVVSAS-EDSYVYVWKYE 773 (927)
Q Consensus 720 -----s~Dg~I~VwD~~~~-~~~~~~~~~~---------~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~ 773 (927)
..+..|++||.... ...+..+... ..+..++|+|||++|+..+ .++...||.++
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 312 SGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp -----CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 45678999996543 2333333210 0366789999999888766 46776677654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-14 Score=160.29 Aligned_cols=229 Identities=7% Similarity=0.006 Sum_probs=160.6
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCC-CCEEEEEEcCCCCEEE-EEeCCCcEEEEecCcCcccceeecc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKFSLDGRYLA-SAGEDCVIHVWQVVESERKGELLEK 497 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~-~~I~~vafSpdG~~La-Sgs~DgtVrVWdv~~~~~~~~l~~~ 497 (927)
...+++++..+++|.+|+..+++... .+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++....+...
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~-----~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYK-----SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEE-----EEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEE-----EEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 34456677778899999987765433 333332 2578999999999665 5557899999999876543332100
Q ss_pred cccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC
Q 002407 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (927)
Q Consensus 498 ~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp 577 (927)
. .+ ..+...+..++|+|
T Consensus 85 ~-----------------------------------------------------------~~----~~~~~~~~~~~~sp 101 (349)
T 1jmx_B 85 S-----------------------------------------------------------VP----GEVGRSMYSFAISP 101 (349)
T ss_dssp C-----------------------------------------------------------ST----TEEEECSSCEEECT
T ss_pred c-----------------------------------------------------------cc----ccccccccceEECC
Confidence 0 00 00012355688898
Q ss_pred C-cEEEEEeCC------------CcEEEEeCCCCc---EEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 578 S-QHLLSSSMD------------KTVRLWHLSSKT---CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 578 d-~~L~Sgs~D------------gtV~lWDl~t~~---~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
+ .+|++++.+ +.|.+||+.+++ .+..+.+...+.+++|+| +++ +++++ +.|.+||+.+++
T Consensus 102 dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~ 177 (349)
T 1jmx_B 102 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-DGS-LYVAG--PDIYKMDVKTGK 177 (349)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-TSC-EEEES--SSEEEECTTTCC
T ss_pred CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECC-CCc-EEEcc--CcEEEEeCCCCc
Confidence 8 567777754 899999998843 345556666799999999 888 55554 449999999887
Q ss_pred EEEeccCCC---------------------------------------------------------------------cE
Q 002407 642 VVDWNDLHE---------------------------------------------------------------------MV 652 (927)
Q Consensus 642 ~v~~~~~~~---------------------------------------------------------------------~V 652 (927)
.+..+.... .+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
T 1jmx_B 178 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY 257 (349)
T ss_dssp EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcc
Confidence 765433221 34
Q ss_pred EEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 002407 653 TAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 653 ~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~ 731 (927)
..++|+| ++++++++ ++.|.+||+.+++....+. ....+.+++|+|++. .|++++.++.|.+||..
T Consensus 258 ~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----------~~~~~~~~~~s~dg~-~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 258 FTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN----------LDHTYYCVAFDKKGD-KLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp EEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE----------CSSCCCEEEECSSSS-CEEEESBSSEEEEEETT
T ss_pred eeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc----------CCCCccceEECCCCC-EEEEecCCCeEEEEecc
Confidence 5677889 99999988 8899999999988766543 223467899999987 45667888999999975
Q ss_pred cc
Q 002407 732 DL 733 (927)
Q Consensus 732 ~~ 733 (927)
..
T Consensus 325 ~~ 326 (349)
T 1jmx_B 325 TL 326 (349)
T ss_dssp TT
T ss_pred cc
Confidence 54
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-15 Score=176.82 Aligned_cols=263 Identities=12% Similarity=0.069 Sum_probs=178.9
Q ss_pred eeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCC-CCEEEEEEcCCCCEEEEEeC---CCcEEEEecCc--
Q 002407 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKFSLDGRYLASAGE---DCVIHVWQVVE-- 487 (927)
Q Consensus 414 ~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~-~~I~~vafSpdG~~LaSgs~---DgtVrVWdv~~-- 487 (927)
+....|++.+++.+..++++++|....++. +.+..|. ..|..++|+|| ++|++++. +...+||.+..
T Consensus 27 ~~~~~DG~~la~~s~~~g~~~lw~~~~g~~------~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 27 LQGVVDGDKLLVVGFSEGSVNAYLYDGGET------VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEETTEE------EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred eecCCCCCeEEEEEccCCceeEEEEcCCCc------EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 444456666666665578899998655443 3344555 68999999999 88888775 56667776654
Q ss_pred CcccceeecccccCccccEEEEccCCCCC--eecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEcc
Q 002407 488 SERKGELLEKQEDGHLNMLLLANGSPEPT--SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG 565 (927)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~v~~v~~spd~~--~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~g 565 (927)
......+.. .. ......++|++. .++....+.. .+|++.......+..
T Consensus 100 ~g~~~~l~~--~~----~~~~~~~s~dg~~~~~~s~~~~~~------------------------~l~d~~~g~~~~l~~ 149 (582)
T 3o4h_A 100 PGEEQRLEA--VK----PMRILSGVDTGEAVVFTGATEDRV------------------------ALYALDGGGLRELAR 149 (582)
T ss_dssp TTCCEECTT--SC----SBEEEEEEECSSCEEEEEECSSCE------------------------EEEEEETTEEEEEEE
T ss_pred CCccccccC--CC----CceeeeeCCCCCeEEEEecCCCCc------------------------eEEEccCCcEEEeec
Confidence 222222211 11 122346666654 3333322221 133443333334444
Q ss_pred CCCCEEEEEecCC-cEEEEEeCC----CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC--cEEEEeCC
Q 002407 566 HLDDVLDLSWSKS-QHLLSSSMD----KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA--KVRIWSIP 638 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~Sgs~D----gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg--~I~IWDl~ 638 (927)
+.. .+++|+|| .+|++++.+ ..|++||+.+++......|...+..++|+| |+++|+++..++ .|++||+.
T Consensus 150 ~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~ 226 (582)
T 3o4h_A 150 LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPR 226 (582)
T ss_dssp ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTT
T ss_pred CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCC
Confidence 444 78999999 667777776 789999999998876666888999999999 999999888888 89999999
Q ss_pred CCcEEEeccCCCcEEEEE--------ECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 639 ERQVVDWNDLHEMVTAAC--------YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 639 t~~~v~~~~~~~~V~sla--------~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
+++......+...+..++ |+|||.++++++.++.++||++ ++... .....|.+++|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~------------~~~~~v~~~~~s- 291 (582)
T 3o4h_A 227 DGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE------------APQGNHGRVVLW- 291 (582)
T ss_dssp TCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC------------CCSSEEEEEEEE-
T ss_pred CCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec------------cCCCceEEEEec-
Confidence 988774444445555566 9999999999999999999999 55432 123568899999
Q ss_pred CCCcEEEEEECCC---cEEEEECCc
Q 002407 711 GSSSEVLVTSADS---RIRVVDGID 732 (927)
Q Consensus 711 dg~~~Llsgs~Dg---~I~VwD~~~ 732 (927)
++. ++++++.+. .|.+||...
T Consensus 292 dg~-~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 292 RGK-LVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp TTE-EEEEEEETTEEEEEEEETTCC
T ss_pred CCE-EEEEEcCCCCCCeEEEEcCCC
Confidence 765 667776663 477777543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-15 Score=182.58 Aligned_cols=284 Identities=10% Similarity=0.063 Sum_probs=179.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccc
Q 002407 461 SIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKS 540 (927)
Q Consensus 461 ~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~ 540 (927)
.++|+|||++++++ .|++|++||+.+++....+..... ....+..++|+||+..|+.+............
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~------- 89 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTM--KSVNASNYGLSPDRQFVYLESDYSKLWRYSYT------- 89 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHH--HTTTCSEEEECTTSSEEEEEEEEEECSSSCEE-------
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccc--cccceeeEEECCCCCeEEEEecCceeEEeecc-------
Confidence 68999999766654 699999999998875544321100 00136788999999998876542100000000
Q ss_pred cccCcccccceEeecCCCce---EEEccCCCCEEEEEecCCc-EEEEEeCCCcEEEEeCCCCcEEEEEe--cCCce----
Q 002407 541 LSLDHMVVPETVFALSDKPI---CSFQGHLDDVLDLSWSKSQ-HLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYV---- 610 (927)
Q Consensus 541 ~~~~~~~~~~~v~~~s~k~i---~~l~gH~~~V~~l~~spd~-~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V---- 610 (927)
....+|++..... ..+ ...+..++|+||+ .|+.+. ++.|++|++.+++...... +...|
T Consensus 90 -------~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~ 158 (719)
T 1z68_A 90 -------ATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGI 158 (719)
T ss_dssp -------EEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESS
T ss_pred -------eEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccc
Confidence 0013344433322 222 2468889999994 566664 8899999999888765432 22222
Q ss_pred -------------EEEEEccCCCCEEEEEECCC----------------------------------cEEEEeCCCCcEE
Q 002407 611 -------------TCIQFNPVDDRYFISGSLDA----------------------------------KVRIWSIPERQVV 643 (927)
Q Consensus 611 -------------~~v~fsp~dg~~L~sgs~Dg----------------------------------~I~IWDl~t~~~v 643 (927)
.+++|+| |+++|++++.|. .|++||+.+++..
T Consensus 159 ~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~ 237 (719)
T 1z68_A 159 PDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV 237 (719)
T ss_dssp CCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH
T ss_pred ccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc
Confidence 4899999 999999988652 7889999987642
Q ss_pred ---Ee------ccCCCcEEEEEECCCCCEEEEEECC----CeEEEEE----CCCCeeeeecccccccccccCCCCCeE--
Q 002407 644 ---DW------NDLHEMVTAACYTPDGQGALVGSYK----GSCHLYN----TSENKLQQKSPINLQNKKKRSHQRKIT-- 704 (927)
Q Consensus 644 ---~~------~~~~~~V~sla~spdg~~l~tgs~D----g~I~IwD----l~~~~~~~~~~i~~~~~~~~~h~~~Vt-- 704 (927)
.. ..+...+..++|+||++++++.... ..|.+|| +.+++....... ....+...+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~ 312 (719)
T 1z68_A 238 GPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEH-----IEESRTGWAGGF 312 (719)
T ss_dssp CCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEE-----EEECSSSCSSSS
T ss_pred ceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEec-----ccccCCceEccc
Confidence 22 2355678999999998777765433 2488899 777665433210 0013444454
Q ss_pred ---EEEEcCCCCcEEEE-EECCC--cEEEEECCcc-eEEEEeecCCcceEEEEEecCCCEEEEEECC-----CcEEEEEC
Q 002407 705 ---GFQFAPGSSSEVLV-TSADS--RIRVVDGIDL-VHKFKGFRNTNSQISASLTANGRYVVSASED-----SYVYVWKY 772 (927)
Q Consensus 705 ---sl~fspdg~~~Lls-gs~Dg--~I~VwD~~~~-~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D-----g~I~IWdl 772 (927)
.+.|+|++..+++. ...++ .|.+||.... ...+. .....+..+.+. +++.|+..+.+ +.++||.+
T Consensus 313 ~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt--~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 313 FVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQIT--SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRI 389 (719)
T ss_dssp SCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECS--CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred cCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecc--cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEE
Confidence 78899999865553 44555 4666664332 22222 223446677777 88887777665 78899987
Q ss_pred CC
Q 002407 773 EA 774 (927)
Q Consensus 773 ~s 774 (927)
..
T Consensus 390 ~~ 391 (719)
T 1z68_A 390 SI 391 (719)
T ss_dssp EC
T ss_pred eC
Confidence 64
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=5.9e-14 Score=172.85 Aligned_cols=280 Identities=10% Similarity=0.081 Sum_probs=176.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccccc
Q 002407 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (927)
Q Consensus 458 ~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~ 537 (927)
....++|+|||++|+++ |++|++|++.+++....+..............+.++||+..++....+..+....
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~------ 89 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHS------ 89 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSC------
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEc------
Confidence 35589999999999986 9999999999987654332111111111122367899999888875543221000
Q ss_pred ccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCce----
Q 002407 538 RKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYV---- 610 (927)
Q Consensus 538 ~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V---- 610 (927)
......++++....+..+..|...+...+|||| ..|+.+ .++.|++|++.+++..+... +...+
T Consensus 90 --------~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~ 160 (740)
T 4a5s_A 90 --------YTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGI 160 (740)
T ss_dssp --------EEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESB
T ss_pred --------cceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCc
Confidence 001114667766666677888889999999999 456665 57899999999887655332 22222
Q ss_pred -------------EEEEEccCCCCEEEEEECCC------------------------------------cEEEEeCCC--
Q 002407 611 -------------TCIQFNPVDDRYFISGSLDA------------------------------------KVRIWSIPE-- 639 (927)
Q Consensus 611 -------------~~v~fsp~dg~~L~sgs~Dg------------------------------------~I~IWDl~t-- 639 (927)
..+.|+| |+++|+.++.|. .|++||+.+
T Consensus 161 ~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~ 239 (740)
T 4a5s_A 161 TDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLS 239 (740)
T ss_dssp CCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCC
T ss_pred ccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCC
Confidence 3489999 999999876332 488899988
Q ss_pred -C---cEEEecc------CCCcEEEEEECCCCCEEEEEECC----CeEEEEECCCCe----eeeecccccccccccCCCC
Q 002407 640 -R---QVVDWND------LHEMVTAACYTPDGQGALVGSYK----GSCHLYNTSENK----LQQKSPINLQNKKKRSHQR 701 (927)
Q Consensus 640 -~---~~v~~~~------~~~~V~sla~spdg~~l~tgs~D----g~I~IwDl~~~~----~~~~~~i~~~~~~~~~h~~ 701 (927)
+ +...... +...+..++|+|||+.++..... ..|++||+.+++ +.....+. ...+..
T Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~-----~~~~~~ 314 (740)
T 4a5s_A 240 SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI-----EMSTTG 314 (740)
T ss_dssp SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-----EECSSS
T ss_pred CCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-----eccCCc
Confidence 7 5554433 55679999999999976665432 369999999876 22221110 012333
Q ss_pred Ce-----EEEEEcCCCCcEEEEEE-CCC--cEEEEECCcce-EEEEeecCCcceEEEEEecCCCEEEEEEC
Q 002407 702 KI-----TGFQFAPGSSSEVLVTS-ADS--RIRVVDGIDLV-HKFKGFRNTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 702 ~V-----tsl~fspdg~~~Llsgs-~Dg--~I~VwD~~~~~-~~~~~~~~~~~v~sv~fspdg~~Lasgs~ 763 (927)
.| ....|+|+|+.+++..+ .+| .|++||..... ..+. .....+..+. .+|++.|+..+.
T Consensus 315 ~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT--~g~~~v~~~~-~~d~~~i~f~~~ 382 (740)
T 4a5s_A 315 WVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT--KGTWEVIGIE-ALTSDYLYYISN 382 (740)
T ss_dssp CSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC--CSSSCEEEEE-EECSSEEEEEES
T ss_pred eEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc--cCCEEEEEEE-EEeCCEEEEEEe
Confidence 33 36789999985442554 444 57778854322 2222 1233344433 244666655544
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-13 Score=165.45 Aligned_cols=315 Identities=12% Similarity=0.100 Sum_probs=190.1
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCC-----CEEEEEEcCCCCEEEEEeCC---------CcEEEEecCcC
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG-----SIWSIKFSLDGRYLASAGED---------CVIHVWQVVES 488 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~-----~I~~vafSpdG~~LaSgs~D---------gtVrVWdv~~~ 488 (927)
+++.+ ++.|++|+..+++...+ +.+|.. ....++|||||++||.++.+ +.+.|||+.++
T Consensus 30 ~~~~~--~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~ 102 (740)
T 4a5s_A 30 YLYKQ--ENNILVFNAEYGNSSVF-----LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR 102 (740)
T ss_dssp EEEEE--TTEEEEEETTTCCEEEE-----ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred EEEEc--CCcEEEEECCCCceEEE-----EechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCC
Confidence 44444 67999999888865433 355543 33458899999999999876 56679999988
Q ss_pred cccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCC-
Q 002407 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL- 567 (927)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~- 567 (927)
+... + ..+...+...+|+|||..|+.... ..+.......... ..+ ...+.....+.++.
T Consensus 103 ~~~~-l-----~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~~~~-~~l------------t~~g~~~~~~~g~~~ 162 (740)
T 4a5s_A 103 QLIT-E-----ERIPNNTQWVTWSPVGHKLAYVWN-NDIYVKIEPNLPS-YRI------------TWTGKEDIIYNGITD 162 (740)
T ss_dssp EECC-S-----SCCCTTEEEEEECSSTTCEEEEET-TEEEEESSTTSCC-EEC------------CSCCBTTTEEESBCC
T ss_pred cEEE-c-----ccCCCcceeeEECCCCCEEEEEEC-CeEEEEECCCCce-EEE------------cCCCCccceecCccc
Confidence 6433 2 233456889999999999988743 3343222111000 000 00111111222332
Q ss_pred --------CCEEEEEecCC-cEEEEEeCCC------------------------------------cEEEEeCCC---C-
Q 002407 568 --------DDVLDLSWSKS-QHLLSSSMDK------------------------------------TVRLWHLSS---K- 598 (927)
Q Consensus 568 --------~~V~~l~~spd-~~L~Sgs~Dg------------------------------------tV~lWDl~t---~- 598 (927)
+....+.|+|| .+|+.++.|. +|++||+.+ +
T Consensus 163 ~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~ 242 (740)
T 4a5s_A 163 WVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 242 (740)
T ss_dssp HHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS
T ss_pred ccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC
Confidence 12235889998 5677665321 588999998 7
Q ss_pred --cEEEEEe------cCCceEEEEEccCCCCEEEEEEC----CCcEEEEeCCCCc----EEEe-----ccCCCcE-----
Q 002407 599 --TCLKIFS------HSDYVTCIQFNPVDDRYFISGSL----DAKVRIWSIPERQ----VVDW-----NDLHEMV----- 652 (927)
Q Consensus 599 --~~~~~~~------h~~~V~~v~fsp~dg~~L~sgs~----Dg~I~IWDl~t~~----~v~~-----~~~~~~V----- 652 (927)
+...... |...+..++|+| ++++++.... +..|.+||+.+++ +... ..+...+
T Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~ 321 (740)
T 4a5s_A 243 NATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 321 (740)
T ss_dssp CCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred cceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcC
Confidence 4444332 677899999999 8887665543 2369999998876 2211 2233333
Q ss_pred EEEEECCCCCEEE-EEEC-CC--eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC----CCc
Q 002407 653 TAACYTPDGQGAL-VGSY-KG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA----DSR 724 (927)
Q Consensus 653 ~sla~spdg~~l~-tgs~-Dg--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~----Dg~ 724 (927)
..+.|+|||+.|+ ..+. +| .|++||+.++..... ......+..+.. +++..+++++.. .+.
T Consensus 322 ~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~l----------T~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~ 390 (740)
T 4a5s_A 322 SEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI----------TKGTWEVIGIEA-LTSDYLYYISNEYKGMPGG 390 (740)
T ss_dssp CCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEES----------CCSSSCEEEEEE-ECSSEEEEEESCGGGCTTC
T ss_pred CCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEec----------ccCCEEEEEEEE-EeCCEEEEEEecCCCCCce
Confidence 3688999999877 5553 33 588889887654432 123445555542 445545555544 234
Q ss_pred EEEE--ECCcceEE--EEee--cCCcceEEEEEecCCCEEEEEECC---CcEEEEECCCCC
Q 002407 725 IRVV--DGIDLVHK--FKGF--RNTNSQISASLTANGRYVVSASED---SYVYVWKYEAES 776 (927)
Q Consensus 725 I~Vw--D~~~~~~~--~~~~--~~~~~v~sv~fspdg~~Lasgs~D---g~I~IWdl~s~~ 776 (927)
..|| +....... +... ........+.|+|++++++..... ..+++++..+++
T Consensus 391 ~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~ 451 (740)
T 4a5s_A 391 RNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDK 451 (740)
T ss_dssp BEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred eEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCc
Confidence 4554 44332221 1110 012457789999999987765543 358888877653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-13 Score=154.57 Aligned_cols=273 Identities=13% Similarity=0.105 Sum_probs=178.6
Q ss_pred CceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecCcCcccceeeccc
Q 002407 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE----------DCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 429 ~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~----------DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
.++.|.+|+..++++. .++..+..+ .|+|+|||++|+++.. +++|.+||+.+.+...++....
T Consensus 29 ~d~~v~v~D~~t~~~~-----~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~ 101 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFL-----GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP 101 (361)
T ss_dssp GGCEEEEEETTTCCEE-----EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred ccCeEEEEECCCCeEE-----EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence 4678999997766543 345666665 8999999999998863 6789999987765544431000
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd 578 (927)
+ . ..+......++++|+
T Consensus 102 -----------------------------------------------------------~---~-~~~g~~p~~i~~spd 118 (361)
T 2oiz_A 102 -----------------------------------------------------------K---R-VQGLNYDGLFRQTTD 118 (361)
T ss_dssp -----------------------------------------------------------T---B-CCBCCCGGGEEECTT
T ss_pred -----------------------------------------------------------c---c-cccCCCcceEEECCC
Confidence 0 0 001223456889999
Q ss_pred -cEEEEEeC--CCcEEEEeCCCCcEEEE-EecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEE------ecc
Q 002407 579 -QHLLSSSM--DKTVRLWHLSSKTCLKI-FSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVD------WND 647 (927)
Q Consensus 579 -~~L~Sgs~--DgtV~lWDl~t~~~~~~-~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~------~~~ 647 (927)
++|+++.. +++|.+||+.+++.+.. +.+... ..+.+.|.....+++.+.||.+.+|++.. +++.. .+.
T Consensus 119 g~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~ 197 (361)
T 2oiz_A 119 GKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFS 197 (361)
T ss_dssp SSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSC
T ss_pred CCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEc
Confidence 56777663 68999999999998887 664432 33667784457888999999999999865 55541 112
Q ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccc---cccCCCCCeEEEEEcCCCCcEEEEEE----
Q 002407 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK---KKRSHQRKITGFQFAPGSSSEVLVTS---- 720 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~---~~~~h~~~Vtsl~fspdg~~~Llsgs---- 720 (927)
.......+.+++++..++..+.++.|.++|+..........+..... ...........++|+|++..++++..
T Consensus 198 ~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~ 277 (361)
T 2oiz_A 198 VKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK 277 (361)
T ss_dssp TTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred CCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence 22222234446778888888889999999997654321111100000 00000011123689999875555444
Q ss_pred ------CCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 721 ------ADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 721 ------~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
....|.+||............+. ...++|+|||++|++++. +.|.|||..++
T Consensus 278 ~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 278 EGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred cccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 13489999976554443333333 889999999999998887 99999999987
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.59 E-value=9.8e-13 Score=146.52 Aligned_cols=253 Identities=8% Similarity=0.061 Sum_probs=159.9
Q ss_pred ceEEEEeccCc--ccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCcCcccceeecccccCccccE
Q 002407 430 RVRVRQYGKSC--KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKGELLEKQEDGHLNML 506 (927)
Q Consensus 430 ~~~V~i~~~~s--~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs-~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v 506 (927)
.+.|.+|+... +++ .....+..+...+..+++ +|++|++++ .++.|.+|++.....+..+...
T Consensus 74 ~~~v~~~~~~~~~g~~---~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~--------- 139 (361)
T 3scy_A 74 QAAVSAFAFDKEKGTL---HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDV--------- 139 (361)
T ss_dssp TCEEEEEEEETTTTEE---EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE---------
T ss_pred CCcEEEEEEeCCCCcE---EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccccee---------
Confidence 47888887654 333 223344556677888888 888888776 5889999999754432221100
Q ss_pred EEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCc-EEEEEe
Q 002407 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ-HLLSSS 585 (927)
Q Consensus 507 ~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~-~L~Sgs 585 (927)
.... +........+...+.+++|+|++ +|++++
T Consensus 140 --~~~~--------------------------------------------g~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 173 (361)
T 3scy_A 140 --IEFK--------------------------------------------GSGPDKERQTMPHLHCVRITPDGKYLLADD 173 (361)
T ss_dssp --EECC--------------------------------------------CCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred --EEcc--------------------------------------------CCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence 0000 00000001234457889999994 465554
Q ss_pred -CCCcEEEEeCCCCc-------E-------EEEEecCCceEEEEEccCCCCEEEEEE-CCCcEEEEeCCCCcEEEe--c-
Q 002407 586 -MDKTVRLWHLSSKT-------C-------LKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPERQVVDW--N- 646 (927)
Q Consensus 586 -~DgtV~lWDl~t~~-------~-------~~~~~h~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~t~~~v~~--~- 646 (927)
.++.|++|++.... . .....+...+..++|+| ++++|+++. .++.|.+|++.++++... .
T Consensus 174 ~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~ 252 (361)
T 3scy_A 174 LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVA 252 (361)
T ss_dssp TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEE
T ss_pred CCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEe
Confidence 58899999887543 1 11223566788999999 999887777 689999999987765321 1
Q ss_pred ---cCCCcEEEEEECCCCCEEEEEECC--CeEEEEECC--CCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 647 ---DLHEMVTAACYTPDGQGALVGSYK--GSCHLYNTS--ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 647 ---~~~~~V~sla~spdg~~l~tgs~D--g~I~IwDl~--~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
.+...+..++|+|||++|+++..+ +.|.+|++. +++......+ .. ...+..++|+|+++ +|+++
T Consensus 253 ~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~-------~~-g~~~~~~~~spdg~-~l~~~ 323 (361)
T 3scy_A 253 ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ-------LT-GIHPRNFIITPNGK-YLLVA 323 (361)
T ss_dssp SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE-------EC-SSCCCEEEECTTSC-EEEEE
T ss_pred cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe-------cC-CCCCceEEECCCCC-EEEEE
Confidence 122457899999999999777665 889999996 4443322111 12 45678999999998 55555
Q ss_pred E-CCCcEEEEE--CCcceEEEEe-ecCCcceEEEEEe
Q 002407 720 S-ADSRIRVVD--GIDLVHKFKG-FRNTNSQISASLT 752 (927)
Q Consensus 720 s-~Dg~I~VwD--~~~~~~~~~~-~~~~~~v~sv~fs 752 (927)
+ .++.|.+|+ .......... ..+...+.++.|.
T Consensus 324 ~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 324 CRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp ETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred ECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 5 779999965 3332222221 1123456777775
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-13 Score=154.15 Aligned_cols=285 Identities=9% Similarity=-0.041 Sum_probs=168.0
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccE--EEE
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML--LLA 509 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v--~~v 509 (927)
.|.+|+..+++...+. .+|...+..+.|+|||++|+.++.++.|++||+.+++....+. .+...+ ...
T Consensus 61 ~l~~~d~~~g~~~~lt-----~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~-----~~~~~~~~~~~ 130 (388)
T 3pe7_A 61 NYYLLDLNTQVATQLT-----EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ-----VPAEWVGYGTW 130 (388)
T ss_dssp EEEEEETTTCEEEECC-----CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-----CCTTEEEEEEE
T ss_pred eEEEEeCCCCceEEee-----eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee-----chhhcccccce
Confidence 6788887776654333 5666666678899999999999999999999999876543321 111222 122
Q ss_pred ccCCCCCeecccccCCceeeecccccc-cccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC-C-cEEEEEeC
Q 002407 510 NGSPEPTSLSPKHLDNHLEKKRRGRSI-NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-S-QHLLSSSM 586 (927)
Q Consensus 510 ~~spd~~~la~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp-d-~~L~Sgs~ 586 (927)
..++++.+++.......-... ..... ...... ........++++.......+..+...+..+.|+| + ..|+....
T Consensus 131 ~~~~dg~~l~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~ 208 (388)
T 3pe7_A 131 VANSDCTKLVGIEIRREDWVP-LTDWKKFHEFYF-TKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHE 208 (388)
T ss_dssp EECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHGG-GCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEEC
T ss_pred eECCCCCeeccccccCccccc-ccccchhhhhhc-cCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEe
Confidence 347888777642111000000 00000 000000 0000111345555556667777888899999999 8 55666665
Q ss_pred C------CcEEEEeCCCCcEEEEEecC--CceEEEEEccCCCCEEEEEEC-CC----cEEEEeCCCCcEEEeccCCCc--
Q 002407 587 D------KTVRLWHLSSKTCLKIFSHS--DYVTCIQFNPVDDRYFISGSL-DA----KVRIWSIPERQVVDWNDLHEM-- 651 (927)
Q Consensus 587 D------gtV~lWDl~t~~~~~~~~h~--~~V~~v~fsp~dg~~L~sgs~-Dg----~I~IWDl~t~~~v~~~~~~~~-- 651 (927)
+ ..|.++|+..+.......+. ..+..++|+| +++.|+..+. ++ .|++||+.+++..........
T Consensus 209 ~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 287 (388)
T 3pe7_A 209 GPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSH 287 (388)
T ss_dssp SCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEE
T ss_pred cCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECC-CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCcee
Confidence 3 37888898877655544444 3588899999 8887755443 22 399999999875443322221
Q ss_pred ----EEEEEECCCCCEEEEE---------ECCCeEEEEECCCCeeeeecccccccc-cccCCCCCeEEEEEcCCCCcEEE
Q 002407 652 ----VTAACYTPDGQGALVG---------SYKGSCHLYNTSENKLQQKSPINLQNK-KKRSHQRKITGFQFAPGSSSEVL 717 (927)
Q Consensus 652 ----V~sla~spdg~~l~tg---------s~Dg~I~IwDl~~~~~~~~~~i~~~~~-~~~~h~~~Vtsl~fspdg~~~Ll 717 (927)
...++|+|||+.|+.. ..+..|++||+.+++............ ........+..++|+|+++.+++
T Consensus 288 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~ 367 (388)
T 3pe7_A 288 LMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF 367 (388)
T ss_dssp EEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred eeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence 1113689999988764 445689999999887643211000000 00001114778899999986555
Q ss_pred EEECCCcEEEEE
Q 002407 718 VTSADSRIRVVD 729 (927)
Q Consensus 718 sgs~Dg~I~VwD 729 (927)
++..++...||.
T Consensus 368 ~s~~~g~~~l~~ 379 (388)
T 3pe7_A 368 TSDVHGKPALYL 379 (388)
T ss_dssp EECTTSSCEEEE
T ss_pred EecCCCceeEEE
Confidence 666677776664
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.1e-14 Score=156.16 Aligned_cols=277 Identities=12% Similarity=0.042 Sum_probs=171.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 456 NGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~D---gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
...+..++|+|||++||..... ..|.+|++.+++..... .........+.|+|++..|+....+..+.....
T Consensus 35 ~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-----~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~ 109 (396)
T 3c5m_A 35 RNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-----EGKGDNTFGGFISTDERAFFYVKNELNLMKVDL 109 (396)
T ss_dssp CCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC-----CSSCBCTTTCEECTTSSEEEEEETTTEEEEEET
T ss_pred ceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee-----cCCCCccccceECCCCCEEEEEEcCCcEEEEEC
Confidence 3347788999999998877543 36888898876533221 111111222568999998877665544432221
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEE-------------------EEecCC-cEEEEE-----eCC
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLD-------------------LSWSKS-QHLLSS-----SMD 587 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~-------------------l~~spd-~~L~Sg-----s~D 587 (927)
.. ++....+..+...... +.|+|+ ..++.. ..+
T Consensus 110 ~~----------------------~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~ 167 (396)
T 3c5m_A 110 ET----------------------LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPT 167 (396)
T ss_dssp TT----------------------CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCC
T ss_pred CC----------------------CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCc
Confidence 11 1111111112221111 346666 333332 456
Q ss_pred CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECC------CcEEEEeCCCCcEEEeccCC--CcEEEEEECC
Q 002407 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD------AKVRIWSIPERQVVDWNDLH--EMVTAACYTP 659 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D------g~I~IWDl~t~~~v~~~~~~--~~V~sla~sp 659 (927)
..|++||+.+++......+...+..+.|+|.++..|+..+.+ ..|.+||+.+++........ ..+..++|+|
T Consensus 168 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp 247 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP 247 (396)
T ss_dssp EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT
T ss_pred ceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC
Confidence 789999999998877777888899999999446666665543 36889998877665555432 3588899999
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC-CCCcEEEEEE-------------
Q 002407 660 DGQGALVGSYK-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP-GSSSEVLVTS------------- 720 (927)
Q Consensus 660 dg~~l~tgs~D-----g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp-dg~~~Llsgs------------- 720 (927)
+|++|+.++.+ +.|++||+.+++....... . ... +.|+| ++. ++++++
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~----------~-~~~-~~~s~~dg~-~l~~~~~~~p~~~~~~~~~ 314 (396)
T 3c5m_A 248 DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM----------P-PCS-HLMSNFDGS-LMVGDGCDAPVDVADADSY 314 (396)
T ss_dssp TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC----------C-SEE-EEEECSSSS-EEEEEECCC----------
T ss_pred CCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC----------C-CCC-CCccCCCCc-eEEEecCCcceeecccccc
Confidence 99988777554 4499999988765433211 1 123 88999 887 566544
Q ss_pred ---CCCcEEEEECCcc-eEEEEeecCCc---------ceEEEEEecCCCEEEEEEC-CCcEEEEEC
Q 002407 721 ---ADSRIRVVDGIDL-VHKFKGFRNTN---------SQISASLTANGRYVVSASE-DSYVYVWKY 772 (927)
Q Consensus 721 ---~Dg~I~VwD~~~~-~~~~~~~~~~~---------~v~sv~fspdg~~Lasgs~-Dg~I~IWdl 772 (927)
.+..|++||.... ...+..+.... .+..++|+|||++|+.++. ++...||.+
T Consensus 315 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 315 NIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 3478999996432 22333322110 2456789999999887765 455555544
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-13 Score=165.69 Aligned_cols=298 Identities=11% Similarity=0.034 Sum_probs=186.9
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEE--eCCCcEEEEecCcCcccceeecccccCc------cccEEEEccCCCCCe-ecc
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASA--GEDCVIHVWQVVESERKGELLEKQEDGH------LNMLLLANGSPEPTS-LSP 520 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSg--s~DgtVrVWdv~~~~~~~~l~~~~~~~~------~~~v~~v~~spd~~~-la~ 520 (927)
+.+.+|...|..++|++++-++++. +.++...||....+.....+........ .........+||+.. |+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3457899999999999987777777 6688999999754443333321110000 000122233588877 665
Q ss_pred cccC-CceeeecccccccccccccCcccccceEeecC--C-CceEEEcc-----CCCCEEEEEecCC-cEEEEEeCC---
Q 002407 521 KHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALS--D-KPICSFQG-----HLDDVLDLSWSKS-QHLLSSSMD--- 587 (927)
Q Consensus 521 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s--~-k~i~~l~g-----H~~~V~~l~~spd-~~L~Sgs~D--- 587 (927)
.... ..+ .++++. + .....+.. |...+..++|+|| +.|++++.+
T Consensus 97 ~~~~~~~l-----------------------~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 153 (662)
T 3azo_A 97 THFGDQRL-----------------------YAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTG 153 (662)
T ss_dssp EBTTTCCE-----------------------EEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECS
T ss_pred EECCCCeE-----------------------EEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccC
Confidence 4332 112 122223 2 33445555 6778899999999 678888876
Q ss_pred -------CcEEEEeCCC------CcEEEEE-ecCCceEEEEEccCCCCEEEEEECCC--------cEEEEeCC-CC---c
Q 002407 588 -------KTVRLWHLSS------KTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDA--------KVRIWSIP-ER---Q 641 (927)
Q Consensus 588 -------gtV~lWDl~t------~~~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg--------~I~IWDl~-t~---~ 641 (927)
..|++||+.+ ++..... .+...+..++|+| |+++|+.++.++ .|++||+. ++ +
T Consensus 154 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 154 EGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp SSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999998 6766655 5667888999999 999998887553 69999998 56 5
Q ss_pred EEEeccC-CCcEEEEEECCCCCEEEEEECCC--eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEE
Q 002407 642 VVDWNDL-HEMVTAACYTPDGQGALVGSYKG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (927)
Q Consensus 642 ~v~~~~~-~~~V~sla~spdg~~l~tgs~Dg--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Lls 718 (927)
...+... ...+..++|+|||++++++..++ .|++||+.+++............ ...-...+..++|+|++. ++++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~p~w~~~~~~~~~~~~~~-~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA-GPLWTPGMRWFAPLANGL-IAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS-CCCCSTTCCSEEECTTSC-EEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccccc-CccccccCceEeEeCCCE-EEEE
Confidence 5554443 57899999999999888887788 67777776666543321100000 000001155788999876 7777
Q ss_pred EECCCcEEEE--ECC-cceEEEEeecCCcceEEE-EEecCCCEEEEEECCC--cEEEEECCCCC
Q 002407 719 TSADSRIRVV--DGI-DLVHKFKGFRNTNSQISA-SLTANGRYVVSASEDS--YVYVWKYEAES 776 (927)
Q Consensus 719 gs~Dg~I~Vw--D~~-~~~~~~~~~~~~~~v~sv-~fspdg~~Lasgs~Dg--~I~IWdl~s~~ 776 (927)
+.. +.++|| |.. .....+.. +...+..+ +++.+.-++++++.+. .|++|++.++.
T Consensus 311 ~~~-~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGELVDAAG--PWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp EBS-SSCEEEEEETTTTEEEECCS--SCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEc-CccEEEEEECCCCcEEEecC--CCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 777 999999 543 22333322 33445555 4443333344455554 45556665553
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-12 Score=142.11 Aligned_cols=238 Identities=11% Similarity=0.080 Sum_probs=173.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC------------------------CcEEEEecCcCcccceeecccccCccccEEEEcc
Q 002407 456 NGSIWSIKFSLDGRYLASAGED------------------------CVIHVWQVVESERKGELLEKQEDGHLNMLLLANG 511 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~D------------------------gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~ 511 (927)
-+.|.+|+|+|+|+++++...+ +.|.+||..+++....+ ..........+++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~----~~~~~~~p~gia~ 98 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS----GKNLFYLPHGLSI 98 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE----CTTTCSSEEEEEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc----CCCccCCceEEEE
Confidence 4679999999999999988877 47999999887765433 1234456678888
Q ss_pred CCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCC--ceEEE---------ccCCCCEEEEEecC-Cc
Q 002407 512 SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK--PICSF---------QGHLDDVLDLSWSK-SQ 579 (927)
Q Consensus 512 spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k--~i~~l---------~gH~~~V~~l~~sp-d~ 579 (927)
.+++.++++......+... +..++ .+..+ .++......|+++| ++
T Consensus 99 d~~g~l~v~d~~~~~v~~~-----------------------~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g 155 (329)
T 3fvz_A 99 DTDGNYWVTDVALHQVFKL-----------------------DPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG 155 (329)
T ss_dssp CTTSCEEEEETTTTEEEEE-----------------------CTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC
T ss_pred CCCCCEEEEECCCCEEEEE-----------------------eCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC
Confidence 9999888776665555332 22222 23333 34556789999999 65
Q ss_pred EEEEEe--CCCcEEEEeCCCCcEEEEEec-C----------CceEEEEEccCC-CCEEEEEECCCcEEEEeCCCCcEEEe
Q 002407 580 HLLSSS--MDKTVRLWHLSSKTCLKIFSH-S----------DYVTCIQFNPVD-DRYFISGSLDAKVRIWSIPERQVVDW 645 (927)
Q Consensus 580 ~L~Sgs--~DgtV~lWDl~t~~~~~~~~h-~----------~~V~~v~fsp~d-g~~L~sgs~Dg~I~IWDl~t~~~v~~ 645 (927)
.|+.+. .++.|++|+ ..++.+..+.. . .....|+|+| + +.++++...++.|++|+..+++.+..
T Consensus 156 ~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~d~~~~~I~~~~~~~G~~~~~ 233 (329)
T 3fvz_A 156 AVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVP-HLDQLCVADRENGRIQCFKTDTKEFVRE 233 (329)
T ss_dssp CEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred eEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 555444 589999999 56777777642 1 2388999999 6 77778888889999999998887765
Q ss_pred cc---CCCcEEEEEECCCCCEEEE-------EECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 646 ND---LHEMVTAACYTPDGQGALV-------GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 646 ~~---~~~~V~sla~spdg~~l~t-------gs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
+. ....+..++|+| +..+++ ...+..|++|++.+++.+..+.. ...+...+.+++++|++ .+
T Consensus 234 ~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~------~~~~~~~p~~ia~~~dG-~l 305 (329)
T 3fvz_A 234 IKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP------VRKHFDMPHDIVASEDG-TV 305 (329)
T ss_dssp ECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC------SSSCCSSEEEEEECTTS-EE
T ss_pred EeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC------CCCccCCeeEEEECCCC-CE
Confidence 53 345788999999 433333 23345899999999988766421 12566778999999998 57
Q ss_pred EEEEECCCcEEEEEC
Q 002407 716 VLVTSADSRIRVVDG 730 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~ 730 (927)
+++...++.|++|+.
T Consensus 306 yvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 306 YIGDAHTNTVWKFTL 320 (329)
T ss_dssp EEEESSSCCEEEEEE
T ss_pred EEEECCCCEEEEEeC
Confidence 888888999999984
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-12 Score=143.68 Aligned_cols=199 Identities=10% Similarity=0.136 Sum_probs=138.2
Q ss_pred CCEEEEEecCC-cEEEEEeCCCcEEEEeCC-CCcEEEEEecC--CceEEEEEccCCCCE--EEEEE-------------C
Q 002407 568 DDVLDLSWSKS-QHLLSSSMDKTVRLWHLS-SKTCLKIFSHS--DYVTCIQFNPVDDRY--FISGS-------------L 628 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~-t~~~~~~~~h~--~~V~~v~fsp~dg~~--L~sgs-------------~ 628 (927)
..+..++|+|+ .+|++++.+ .|.+|++. +++......+. ..+.+++|+| ++++ ++++. .
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 35678999999 568888887 99999997 77766554432 3466789999 8884 44543 6
Q ss_pred CCcEEEEeCC-CCcEEEec-----cCCCcEEEEEECCCCCEEEEEEC-CCeEEEEECC-CCeeeeecccccccccccCCC
Q 002407 629 DAKVRIWSIP-ERQVVDWN-----DLHEMVTAACYTPDGQGALVGSY-KGSCHLYNTS-ENKLQQKSPINLQNKKKRSHQ 700 (927)
Q Consensus 629 Dg~I~IWDl~-t~~~v~~~-----~~~~~V~sla~spdg~~l~tgs~-Dg~I~IwDl~-~~~~~~~~~i~~~~~~~~~h~ 700 (927)
++.+.+|++. ++++.... .....+..++|+|||++|+++.. ++.|++|++. +++......+. ...+.
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-----~~~~g 192 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD-----APDPG 192 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE-----CSSTT
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe-----cCCCC
Confidence 8999999997 46554322 23467999999999998888764 6799999998 66653221111 01235
Q ss_pred CCeEEEEEcCCCCcEEEEEE-CCCcEEEEECC----cce---EEEEeecCC----c-------ceEEEE-EecCCCEEEE
Q 002407 701 RKITGFQFAPGSSSEVLVTS-ADSRIRVVDGI----DLV---HKFKGFRNT----N-------SQISAS-LTANGRYVVS 760 (927)
Q Consensus 701 ~~Vtsl~fspdg~~~Llsgs-~Dg~I~VwD~~----~~~---~~~~~~~~~----~-------~v~sv~-fspdg~~Las 760 (927)
..+..++|+|+++ +|+++. .++.|.+|+.. .+. ..+...... . .+..++ |+|||++|++
T Consensus 193 ~~p~~~~~spdg~-~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v 271 (365)
T 1jof_A 193 DHPRWVAMHPTGN-YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp CCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred CCCCEeEECCCCC-EEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence 6789999999998 455555 57899999732 221 112211111 1 477899 9999999887
Q ss_pred EECCC------cEEEEECCC
Q 002407 761 ASEDS------YVYVWKYEA 774 (927)
Q Consensus 761 gs~Dg------~I~IWdl~s 774 (927)
+..+. .|.+|++..
T Consensus 272 ~~~~~~~~~~~~i~v~~~~~ 291 (365)
T 1jof_A 272 SSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp EEEESSTTSCCEEEEEEECT
T ss_pred ECCCCCCCCCCeEEEEEECC
Confidence 76432 899999963
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-12 Score=141.61 Aligned_cols=268 Identities=10% Similarity=0.005 Sum_probs=161.2
Q ss_pred CceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCC---Cc--EEEEecCcCcccceeecccccCcc
Q 002407 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---CV--IHVWQVVESERKGELLEKQEDGHL 503 (927)
Q Consensus 429 ~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~D---gt--VrVWdv~~~~~~~~l~~~~~~~~~ 503 (927)
....|.+|+...++... | ..+..++|||||++||.++.+ +. |.+|++.+++...... ..
T Consensus 41 ~~~~l~~~d~~~~~~~~------l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~------~~ 104 (347)
T 2gop_A 41 YENTIVIENLKNNARRF------I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE------AK 104 (347)
T ss_dssp EEEEEEEEETTTCCEEE------E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE------ES
T ss_pred ccceEEEEeCCCCceEE------c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc------CC
Confidence 36778888887665322 2 468899999999999988754 33 7777877654332211 11
Q ss_pred ccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEE
Q 002407 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLS 583 (927)
Q Consensus 504 ~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~S 583 (927)
. +..+.|+|++..|+....+..- .+ ....+..+.|..++.-+.
T Consensus 105 ~-~~~~~wspdg~~l~~~~~~~~~-----------------------------~~-------~~~~~~~~~~~~~g~~~~ 147 (347)
T 2gop_A 105 N-IRSLEWNEDSRKLLIVGFKRRE-----------------------------DE-------DFIFEDDVPAWFDDLGFF 147 (347)
T ss_dssp E-EEEEEECTTSSEEEEEEECCCC---------------------------------------------CCCC-------
T ss_pred C-ccceeECCCCCEEEEEEccCCC-----------------------------cC-------CcEEEcccceeecCcccc
Confidence 2 6667777777766554221000 00 000011122222211111
Q ss_pred EeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC-------cEEEEeCCCCcEEEeccCCCcEEEEE
Q 002407 584 SSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA-------KVRIWSIPERQVVDWNDLHEMVTAAC 656 (927)
Q Consensus 584 gs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg-------~I~IWDl~t~~~v~~~~~~~~V~sla 656 (927)
......|++||+.+++.+..+... .+..++|+| ++ +++++..+. ...||.+.+++...+..+ ..+..+
T Consensus 148 ~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~- 222 (347)
T 2gop_A 148 DGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV- 222 (347)
T ss_dssp --CEEEEEEEETTTTEEEEEEEEE-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE-
T ss_pred cCccceEEEEECCCCeEEeeecCC-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE-
Confidence 123457999999998874444434 889999999 88 777776542 334444446665554444 445444
Q ss_pred ECCCCCEEEEEECC--------CeEEEEECCCCeeeeecccccccccccCCCCCeEE-EEEcCCCCcEEEEEECCCcEEE
Q 002407 657 YTPDGQGALVGSYK--------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG-FQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 657 ~spdg~~l~tgs~D--------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts-l~fspdg~~~Llsgs~Dg~I~V 727 (927)
+|+|++|+.++.+ ..|.+|| +++..... ..+...+.. +.|+ ++ ++++++.++.++|
T Consensus 223 -spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~---------~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l 287 (347)
T 2gop_A 223 -DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL---------DEVDRGVGQAKIKD-GK--VYFTLFEEGSVNL 287 (347)
T ss_dssp -EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS---------TTCCSEEEEEEEET-TE--EEEEEEETTEEEE
T ss_pred -CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc---------ccCCcccCCccEEc-Cc--EEEEEecCCcEEE
Confidence 9999998887754 3688888 44433221 244566776 8998 65 7888899999999
Q ss_pred EECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcE-EEEECC
Q 002407 728 VDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV-YVWKYE 773 (927)
Q Consensus 728 wD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I-~IWdl~ 773 (927)
| ...... .........+..++|++ .++++++.++.. .||.+.
T Consensus 288 ~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 288 Y-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp E-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred E-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 8 542211 12222356788999999 677787777765 777775
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-12 Score=146.07 Aligned_cols=264 Identities=9% Similarity=-0.037 Sum_probs=157.8
Q ss_pred ceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCcc-ccEEE
Q 002407 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL-NMLLL 508 (927)
Q Consensus 430 ~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~-~~v~~ 508 (927)
...|.+|+...++...+. .++...+..+.|+|||++|+.++.++.|++|++.+++.............. ..+..
T Consensus 59 ~~~l~~~d~~~~~~~~l~-----~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~ 133 (396)
T 3c5m_A 59 NRNYYLLNLETQQAVQLT-----EGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVAN 133 (396)
T ss_dssp SCEEEEEETTTTEEEECC-----CSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEEC
T ss_pred CceEEEEECCCCcEEEee-----cCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEe
Confidence 346777887666543221 223322334789999999999999999999999877643322101000000 00000
Q ss_pred -------------EccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEe
Q 002407 509 -------------ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW 575 (927)
Q Consensus 509 -------------v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~ 575 (927)
..++|++..++..... .........++++.......+..+...+..+.|
T Consensus 134 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~------------------~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~ 195 (396)
T 3c5m_A 134 SDCTKLVGIEILKRDWQPLTSWEKFAEFY------------------HTNPTCRLIKVDIETGELEVIHQDTAWLGHPIY 195 (396)
T ss_dssp TTSSEEEEEEEEGGGCCCCCSHHHHHHHH------------------HTCCCEEEEEEETTTCCEEEEEEESSCEEEEEE
T ss_pred ccCCccccccccccccCCCCcceeeeeec------------------cCCCcceEEEEECCCCcEEeeccCCcccccceE
Confidence 2344554443332100 000000013344444444455567788999999
Q ss_pred cC-C-cEEEEEeCC------CcEEEEeCCCCcEEEEEec--CCceEEEEEccCCCCEEEEEECC-----CcEEEEeCCCC
Q 002407 576 SK-S-QHLLSSSMD------KTVRLWHLSSKTCLKIFSH--SDYVTCIQFNPVDDRYFISGSLD-----AKVRIWSIPER 640 (927)
Q Consensus 576 sp-d-~~L~Sgs~D------gtV~lWDl~t~~~~~~~~h--~~~V~~v~fsp~dg~~L~sgs~D-----g~I~IWDl~t~ 640 (927)
+| + +.|+..+.+ ..|.+||+..++......+ ...+..++|+| ++++|+.++.+ +.|++||+.++
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred CCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC-CCCEEEEEecCCCCccceEEEEECCCC
Confidence 99 6 556665543 4689999887665444443 23588899999 88877776554 44999999988
Q ss_pred cEEEeccCCCcEEEEEECC-CCCEEEEEE----------------CCCeEEEEECCCCeeeeecccccccccccCCCC--
Q 002407 641 QVVDWNDLHEMVTAACYTP-DGQGALVGS----------------YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQR-- 701 (927)
Q Consensus 641 ~~v~~~~~~~~V~sla~sp-dg~~l~tgs----------------~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~-- 701 (927)
+......... .. +.|+| +|+++++++ .+..|++||+.+++..... .+..
T Consensus 275 ~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~----------~~~~~~ 342 (396)
T 3c5m_A 275 ENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLC----------KHSTSW 342 (396)
T ss_dssp CEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEE----------ECCCCC
T ss_pred CeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEcc----------CCCCcc
Confidence 7655443333 33 89999 999888765 3478999999887643221 1111
Q ss_pred ---------CeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 702 ---------KITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 702 ---------~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
.+..++|+|++..+++++..++...||.
T Consensus 343 ~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 343 DVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp CCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred ccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence 2556789999985444444556555553
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-11 Score=132.63 Aligned_cols=242 Identities=11% Similarity=0.039 Sum_probs=161.6
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeee
Q 002407 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~ 530 (927)
.+..|...+.+++|+|+|++++++..++.|.+|+..+++....
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~------------------------------------- 81 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP------------------------------------- 81 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-------------------------------------
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE-------------------------------------
Confidence 4566777889999999999888888899999999865431110
Q ss_pred cccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEe-CC----CcEEEEeCCCCcEEEEEe
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSS-MD----KTVRLWHLSSKTCLKIFS 605 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs-~D----gtV~lWDl~t~~~~~~~~ 605 (927)
+..+...+.+++|++++.|+.+. .+ +.|.+||..++.....+.
T Consensus 82 --------------------------------~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~ 129 (333)
T 2dg1_A 82 --------------------------------FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE 129 (333)
T ss_dssp --------------------------------EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred --------------------------------eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc
Confidence 01234568899999996555544 44 589999999887654443
Q ss_pred ---cCCceEEEEEccCCCCEEEEEEC------CCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEE-ECCCeEEE
Q 002407 606 ---HSDYVTCIQFNPVDDRYFISGSL------DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVG-SYKGSCHL 675 (927)
Q Consensus 606 ---h~~~V~~v~fsp~dg~~L~sgs~------Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tg-s~Dg~I~I 675 (927)
+...+.+++++| +++++++... .+.|..|+..+++..........+..++|+|+|+.|+++ ..++.|.+
T Consensus 130 ~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 130 DLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp SSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred cCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence 445789999999 8887776653 355777776666655444434568899999999866555 45789999
Q ss_pred EECCC-CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ceEEEEeecC----CcceEEE
Q 002407 676 YNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-LVHKFKGFRN----TNSQISA 749 (927)
Q Consensus 676 wDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~~~~~----~~~v~sv 749 (927)
||+.+ +.....+..... .....+ ..+..+++.+++. ++++...++.|.+||... ....+..... ...+..+
T Consensus 209 ~d~~~~g~~~~~~~~~~~-~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~ 285 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIP-YYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHP 285 (333)
T ss_dssp EEECTTSSSEEEEEEEEE-EECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEE
T ss_pred EEecCCCcCcccccceEE-EecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceE
Confidence 99964 332211100000 000111 4678899999886 666667789999999642 2333332211 1157789
Q ss_pred EEecCCCEEEEEECCC
Q 002407 750 SLTANGRYVVSASEDS 765 (927)
Q Consensus 750 ~fspdg~~Lasgs~Dg 765 (927)
+|++|++.|+.++.++
T Consensus 286 ~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 286 QFIPGTNQLIICSNDI 301 (333)
T ss_dssp EECTTSCEEEEEEECG
T ss_pred EECCCCCEEEEEeCcc
Confidence 9999987776665553
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3e-10 Score=121.75 Aligned_cols=280 Identities=6% Similarity=0.013 Sum_probs=188.3
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeec
Q 002407 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~ 531 (927)
+..+...+.+|+++++|+++++...++.|.+|+.. +.. ..+. .......+..+.+.+++.++++....+.+....
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~---~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 84 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYP---LPTPDAKVMCLTISSDGEVWFTENAANKIGRIT 84 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEE---CSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEec---CCcccCceeeEEECCCCCEEEeCCCCCeEEEEC
Confidence 34566789999999999988877668899999987 432 2221 111235567788888888777654444442221
Q ss_pred ccccccccccccCcccccceEeecCCCceEEE--ccCCCCEEEEEecCCcEEEEE-eCCCcEEEEeCCCCcEEEEEe--c
Q 002407 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSF--QGHLDDVLDLSWSKSQHLLSS-SMDKTVRLWHLSSKTCLKIFS--H 606 (927)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l--~gH~~~V~~l~~spd~~L~Sg-s~DgtV~lWDl~t~~~~~~~~--h 606 (927)
..++ +..+ ..+...+..|++.+++.|+.+ ..++.|.+||. +++...... .
T Consensus 85 -----------------------~~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~ 139 (299)
T 2z2n_A 85 -----------------------KKGI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK 139 (299)
T ss_dssp -----------------------TTSC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred -----------------------CCCc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCC
Confidence 1111 1111 124457889999998655554 46789999998 555443322 4
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe--ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW--NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~--~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
...+..+++.+ +++++++...++.|.+||. +++.... ......+..+++.++|.++++...++.|.+||. ++...
T Consensus 140 ~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~ 216 (299)
T 2z2n_A 140 GSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT 216 (299)
T ss_dssp TCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred CCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE
Confidence 46789999999 8887777766789999998 7766543 223456889999999997776666889999999 66543
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECC
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASED 764 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D 764 (927)
. +.. ......+.++++.+++. ++++...++.|.+||.......+........+.++++ ++|+++++.. .
T Consensus 217 ~-~~~-------~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~ 285 (299)
T 2z2n_A 217 E-FKI-------PTPNARPHAITAGAGID-LWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGETIWFAME-C 285 (299)
T ss_dssp E-EEC-------SSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-T
T ss_pred E-EEC-------CCCCCCceeEEECCCCC-EEEeccCCceEEEECCCCceEEEeCCCCCCccceEEe-cCCCEEEEec-C
Confidence 2 111 23456789999999875 5555557889999997443344433333456888999 8888777655 5
Q ss_pred CcEEEEECCCC
Q 002407 765 SYVYVWKYEAE 775 (927)
Q Consensus 765 g~I~IWdl~s~ 775 (927)
+.|..++..+.
T Consensus 286 ~~l~~~~~~~~ 296 (299)
T 2z2n_A 286 DKIGKLTLIKD 296 (299)
T ss_dssp TEEEEEEEC--
T ss_pred CcEEEEEcCcc
Confidence 67888877653
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-11 Score=130.28 Aligned_cols=238 Identities=9% Similarity=0.017 Sum_probs=165.4
Q ss_pred eEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 450 QEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~-~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
..+..+.....+++|+|+|+ +++++..++.|.+|+..++ ..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~------------------------------------ 62 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS------------------------------------ 62 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE------------------------------------
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE------------------------------------
Confidence 44556777889999999998 7888888999999997653 11
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEe-CCCcEEEEeCCCCcEEEEEe--
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSS-MDKTVRLWHLSSKTCLKIFS-- 605 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs-~DgtV~lWDl~t~~~~~~~~-- 605 (927)
.+..+...+.++++++++.|+.+. .++.|.+||..+++......
T Consensus 63 ---------------------------------~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~ 109 (296)
T 3e5z_A 63 ---------------------------------PEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSF 109 (296)
T ss_dssp ---------------------------------EEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEE
T ss_pred ---------------------------------EEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeecc
Confidence 112244567899999996555554 46899999998887655443
Q ss_pred ---cCCceEEEEEccCCCCEEEEE----E-------------CCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEE
Q 002407 606 ---HSDYVTCIQFNPVDDRYFISG----S-------------LDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGAL 665 (927)
Q Consensus 606 ---h~~~V~~v~fsp~dg~~L~sg----s-------------~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~ 665 (927)
....+..++++| +++++++. . ..+.|..++.. ++..........+..++|+|+++.++
T Consensus 110 ~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv 187 (296)
T 3e5z_A 110 EGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLV 187 (296)
T ss_dssp TTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEE
T ss_pred CCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEE
Confidence 123567899999 99888873 2 13456666655 66655556667789999999999997
Q ss_pred EEECCCeEEEEECC-CCee-eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ceEEEEeecC
Q 002407 666 VGSYKGSCHLYNTS-ENKL-QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-LVHKFKGFRN 742 (927)
Q Consensus 666 tgs~Dg~I~IwDl~-~~~~-~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~~~~~ 742 (927)
+.+.++.|++|++. ++.+ .....+ ..+...+.++++.++|. +++ +. ++.|.+||... ....+.. +
T Consensus 188 ~~~~~~~i~~~~~~~~g~~~~~~~~~-------~~~~~~p~~i~~d~~G~-l~v-~~-~~~v~~~~~~g~~~~~~~~--~ 255 (296)
T 3e5z_A 188 SDTGDNATHRYCLNARGETEYQGVHF-------TVEPGKTDGLRVDAGGL-IWA-SA-GDGVHVLTPDGDELGRVLT--P 255 (296)
T ss_dssp EETTTTEEEEEEECSSSCEEEEEEEE-------CCSSSCCCSEEEBTTSC-EEE-EE-TTEEEEECTTSCEEEEEEC--S
T ss_pred EeCCCCeEEEEEECCCCcCcCCCeEe-------eCCCCCCCeEEECCCCC-EEE-Ec-CCeEEEECCCCCEEEEEEC--C
Confidence 77778999999997 4444 111111 12344567899999986 444 44 88999999643 3333333 2
Q ss_pred CcceEEEEE-ecCCCEEEEEECCCcEEEEECCC
Q 002407 743 TNSQISASL-TANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 743 ~~~v~sv~f-spdg~~Lasgs~Dg~I~IWdl~s 774 (927)
.. +.+++| .++++.|++++.++ +.-++.++
T Consensus 256 ~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 256 QT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp SC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred CC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 33 788899 58999999888764 44555544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.7e-12 Score=138.42 Aligned_cols=266 Identities=8% Similarity=0.004 Sum_probs=182.7
Q ss_pred ccCceEEEEeccCcccccceeeee-EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCcccc
Q 002407 427 GQERVRVRQYGKSCKDLTALYKCQ-EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM 505 (927)
Q Consensus 427 g~~~~~V~i~~~~s~~l~~l~~~q-~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~ 505 (927)
|..++.|..|+..++++....... .-.........|.+. +++++++...++.|.+||..+++.+.++
T Consensus 13 g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i----------- 80 (328)
T 3dsm_A 13 QYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI----------- 80 (328)
T ss_dssp TSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE-----------
T ss_pred CCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc-----------
Confidence 345788999998877664322100 001122456788884 4555566666899999999876543332
Q ss_pred EEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEe
Q 002407 506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSS 585 (927)
Q Consensus 506 v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs 585 (927)
. .......+++++++.|+.+.
T Consensus 81 ----------------------------------------------------------~-~~~~p~~i~~~~~g~lyv~~ 101 (328)
T 3dsm_A 81 ----------------------------------------------------------T-GFTSPRYIHFLSDEKAYVTQ 101 (328)
T ss_dssp ----------------------------------------------------------E-CCSSEEEEEEEETTEEEEEE
T ss_pred ----------------------------------------------------------C-CCCCCcEEEEeCCCeEEEEE
Confidence 0 12346678887877776666
Q ss_pred -CCCcEEEEeCCCCcEEEEEecCC------ceEEEEEccCCCCEEEEEE-CCCcEEEEeCCCCcEEEeccCCCcEEEEEE
Q 002407 586 -MDKTVRLWHLSSKTCLKIFSHSD------YVTCIQFNPVDDRYFISGS-LDAKVRIWSIPERQVVDWNDLHEMVTAACY 657 (927)
Q Consensus 586 -~DgtV~lWDl~t~~~~~~~~h~~------~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~ 657 (927)
.++.|.+||..+++....+.... ....|++ . ++.++++.. .++.|.+||+.+++++...........+++
T Consensus 102 ~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~ 179 (328)
T 3dsm_A 102 IWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVM 179 (328)
T ss_dssp BSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEE
T ss_pred CCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEE
Confidence 89999999999999888777444 6677888 4 555555544 488999999999998877666666788999
Q ss_pred CCCCCEEEEEECC----------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 658 TPDGQGALVGSYK----------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 658 spdg~~l~tgs~D----------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
+|+|+++++...+ +.|.+||..+++....+.+ ........++|+|++. .|+++.. .|.+
T Consensus 180 ~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~--------~~g~~p~~la~~~d~~-~lyv~~~--~v~~ 248 (328)
T 3dsm_A 180 DKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF--------KLGDWPSEVQLNGTRD-TLYWINN--DIWR 248 (328)
T ss_dssp CTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC--------CTTCCCEEEEECTTSC-EEEEESS--SEEE
T ss_pred cCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec--------CCCCCceeEEEecCCC-EEEEEcc--EEEE
Confidence 9999877766554 7899999999887765432 2234688999999887 4555443 8999
Q ss_pred EECCcceEEEEe-ec-CCcceEEEEEec-CCCEEEEE----ECCCcEEEEECCCCCC
Q 002407 728 VDGIDLVHKFKG-FR-NTNSQISASLTA-NGRYVVSA----SEDSYVYVWKYEAESR 777 (927)
Q Consensus 728 wD~~~~~~~~~~-~~-~~~~v~sv~fsp-dg~~Lasg----s~Dg~I~IWdl~s~~~ 777 (927)
||.......... .. .......++++| ++.++++. ..++.|.+|+.. ++.
T Consensus 249 ~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~ 304 (328)
T 3dsm_A 249 MPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL 304 (328)
T ss_dssp EETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred EECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence 996432211011 11 134577899999 55666665 578899999987 543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.44 E-value=7.4e-12 Score=151.35 Aligned_cols=273 Identities=10% Similarity=0.003 Sum_probs=167.8
Q ss_pred cCceEEEEeccCcccccceeeeeEeecCCCCEE---------EEEEc--CCCCE-EEEEeC-CCcEEEEecC--cCcccc
Q 002407 428 QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIW---------SIKFS--LDGRY-LASAGE-DCVIHVWQVV--ESERKG 492 (927)
Q Consensus 428 ~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~---------~vafS--pdG~~-LaSgs~-DgtVrVWdv~--~~~~~~ 492 (927)
..+++..+|...... ..+.|..|...|. ...|+ |||++ ||.++. +..|.+|++. ......
T Consensus 44 ~~~~~~~l~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~ 118 (662)
T 3azo_A 44 AEAGRATLVRRRADG-----AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPR 118 (662)
T ss_dssp TTTTEEEEEEECTTS-----CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCE
T ss_pred ccCCcEEEEEECCCC-----CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCE
Confidence 345567777642111 1244566766666 66665 99998 776654 4556666654 202233
Q ss_pred eeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCC------CceEEEc-c
Q 002407 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD------KPICSFQ-G 565 (927)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~------k~i~~l~-g 565 (927)
.+.......+...+..++|+||+..|+....+..- .. .........++++.+ .....+. .
T Consensus 119 ~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~----~~---------~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ 185 (662)
T 3azo_A 119 PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTG----EG---------PSDVRRFLAAVPLDGSAAADRSAVRELSDD 185 (662)
T ss_dssp ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECS----SS---------TTCEEEEEEEEETTSTTTTCGGGSEESSCS
T ss_pred eccCCccCCCCccccCcEECCCCCEEEEEEecccC----CC---------CCCceeEEEEEECCCCccccCCceeEEEec
Confidence 33211111144567789999999988876543100 00 000000113445544 4455566 6
Q ss_pred CCCCEEEEEecCC-cEEEEEeCC--------CcEEEEeCC-CC---cEEEEEe-cCCceEEEEEccCCCCEEEEEECCC-
Q 002407 566 HLDDVLDLSWSKS-QHLLSSSMD--------KTVRLWHLS-SK---TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDA- 630 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~Sgs~D--------gtV~lWDl~-t~---~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg- 630 (927)
+...+..++|+|| .+|+.++.+ ..|++||+. ++ +...... |...+..+.|+| ++++++++..++
T Consensus 186 ~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~~~ 264 (662)
T 3azo_A 186 AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-DGSLIVATDRTGW 264 (662)
T ss_dssp CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT-TSCEEEEECTTSS
T ss_pred CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC-CCeEEEEECCCCC
Confidence 6678888999999 567777654 379999999 56 4444444 578899999999 888888888888
Q ss_pred -cEEEEeCCCCcEEEeccCCCc---------EEEEEECCCCCEEEEEECCCeEEEE--ECCCCeeeeecccccccccccC
Q 002407 631 -KVRIWSIPERQVVDWNDLHEM---------VTAACYTPDGQGALVGSYKGSCHLY--NTSENKLQQKSPINLQNKKKRS 698 (927)
Q Consensus 631 -~I~IWDl~t~~~v~~~~~~~~---------V~sla~spdg~~l~tgs~Dg~I~Iw--Dl~~~~~~~~~~i~~~~~~~~~ 698 (927)
.|.+||+.+++......++.. +..++|+|++++++++.. +.++|| |+.+++. ..+ ..
T Consensus 265 ~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~-~~l---------~~ 333 (662)
T 3azo_A 265 WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGEL-VDA---------AG 333 (662)
T ss_dssp CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEE-EEC---------CS
T ss_pred eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcE-EEe---------cC
Confidence 577777777877665554322 467899999999999998 998888 6665653 222 24
Q ss_pred CCCCeEEEEEcCCCCcEEEEE-ECCC--cEEEEECC
Q 002407 699 HQRKITGFQFAPGSSSEVLVT-SADS--RIRVVDGI 731 (927)
Q Consensus 699 h~~~Vtsl~fspdg~~~Llsg-s~Dg--~I~VwD~~ 731 (927)
+...+..+. ++++..+++++ +.+. .|.+||..
T Consensus 334 ~~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~ 368 (662)
T 3azo_A 334 PWTEWAATL-TVSGTRAVGVAASPRTAYEVVELDTV 368 (662)
T ss_dssp SCCEEEEEE-EEETTEEEEEEEETTEEEEEEEEETT
T ss_pred CCCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECC
Confidence 455666661 44444444444 4444 45555643
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-11 Score=129.30 Aligned_cols=197 Identities=6% Similarity=0.009 Sum_probs=142.9
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN- 646 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~- 646 (927)
.+.+|++.+++.|+.+..++.|.+||........... ....+..+++.| +++++++...++.|.+|+..+.......
T Consensus 68 ~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~ 146 (270)
T 1rwi_B 68 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPF 146 (270)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCC
T ss_pred CcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeecc
Confidence 4567888888656666558899999988765433221 336789999999 8888777777889999987665443322
Q ss_pred cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 647 ~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
.....+..++++++|+++++...++.|.+||.......... ......+.++++.+++. ++++...++.|.
T Consensus 147 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~---------~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~ 216 (270)
T 1rwi_B 147 TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP---------FTDITAPWGIAVDEAGT-VYVTEHNTNQVV 216 (270)
T ss_dssp CSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC---------CSSCCSEEEEEECTTCC-EEEEETTTSCEE
T ss_pred ccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec---------ccCCCCceEEEECCCCC-EEEEECCCCcEE
Confidence 22246788999999997777777889999998876543321 12336789999999884 666667788999
Q ss_pred EEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 727 VVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 727 VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
+||................+..++++++|+++++...++.|++|++...+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 217 KLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred EEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 99965433222222233567899999999988888899999999987644
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.9e-10 Score=133.35 Aligned_cols=269 Identities=12% Similarity=0.131 Sum_probs=184.1
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC--cCcccceeeccccc
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV--ESERKGELLEKQED 500 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~--~~~~~~~l~~~~~~ 500 (927)
++++...++.|.+++..++++...+ . ....+..+.|+|||++|++++.|+.|.+||+. +.+.+.++
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i-----~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i------ 236 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVL-----D-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI------ 236 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEE-----E-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE------
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEE-----e-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE------
Confidence 3455566788999998877654332 2 22356789999999999999999999999985 43322221
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEec----
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS---- 576 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~s---- 576 (927)
.. ......++|+
T Consensus 237 ---------------------------------------------------------------~~-G~~P~~ia~s~~~~ 252 (567)
T 1qks_A 237 ---------------------------------------------------------------KI-GSEARSIETSKMEG 252 (567)
T ss_dssp ---------------------------------------------------------------EC-CSEEEEEEECCSTT
T ss_pred ---------------------------------------------------------------ec-CCCCceeEEccccC
Confidence 11 1124578899
Q ss_pred CC-cEEEEEe-CCCcEEEEeCCCCcEEEEEec------------CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE
Q 002407 577 KS-QHLLSSS-MDKTVRLWHLSSKTCLKIFSH------------SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642 (927)
Q Consensus 577 pd-~~L~Sgs-~DgtV~lWDl~t~~~~~~~~h------------~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~ 642 (927)
|+ +++++++ .+++|.|+|..+.+.++++.- ...+..+.+++....+++.....|.|.++|..+.+.
T Consensus 253 pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~ 332 (567)
T 1qks_A 253 WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN 332 (567)
T ss_dssp CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred CCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc
Confidence 57 5665554 569999999999999888752 125788889884455556666679999999887543
Q ss_pred E--EeccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCCCeeeeeccc-ccccccccCCCCCeEEEEEcCCCCcEEEE
Q 002407 643 V--DWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPI-NLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (927)
Q Consensus 643 v--~~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~~~~~~~~~i-~~~~~~~~~h~~~Vtsl~fspdg~~~Lls 718 (927)
+ ...........+.|+|+|++|+++. .++.|.++|+.++++.....+ . ...|...-..+ ++|++..++++
T Consensus 333 ~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg-----~~Phpg~g~~~-~~p~~g~v~~t 406 (567)
T 1qks_A 333 LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG-----QTPHPGRGANF-VHPTFGPVWAT 406 (567)
T ss_dssp EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS-----SSBCCTTCEEE-EETTTEEEEEE
T ss_pred ceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC-----cCCCCccceee-ECCCCCcEEEe
Confidence 2 2334455677899999999988776 478899999999987766432 1 12344322223 67875544444
Q ss_pred EE-CCCcEEEEECCc---------ceEEEEeecCCcceEEEEEecCCCEEEEEEC-------CCcEEEEECCCC
Q 002407 719 TS-ADSRIRVVDGID---------LVHKFKGFRNTNSQISASLTANGRYVVSASE-------DSYVYVWKYEAE 775 (927)
Q Consensus 719 gs-~Dg~I~VwD~~~---------~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~-------Dg~I~IWdl~s~ 775 (927)
+. .++.|.++|... .+..+.... ..-..+.++|++++|.+... ...|.|+|+.+.
T Consensus 407 ~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g--~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 407 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALG--GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCCCCeEEEecCCCCCCccccCEEEEEEecCC--CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 43 568999999643 344444332 22234678999999988763 358999999876
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-11 Score=149.30 Aligned_cols=239 Identities=12% Similarity=0.117 Sum_probs=161.1
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDC-----VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~Dg-----tVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
+|...+..++|||||++||.+..++ .|+|||+.+++......
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--------------------------------- 168 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--------------------------------- 168 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE---------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc---------------------------------
Confidence 4666789999999999999876543 89999998776432210
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCc----------------EE
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKT----------------VR 591 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~Dgt----------------V~ 591 (927)
. + ..+..++|+|| ..|+.++.++. |+
T Consensus 169 -----------------------------------~-~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~ 211 (710)
T 2xdw_A 169 -----------------------------------E-R-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY 211 (710)
T ss_dssp -----------------------------------E-E-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEE
T ss_pred -----------------------------------c-C-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEE
Confidence 0 0 01345667776 45666666554 99
Q ss_pred EEeCCCCcE--EEEEe---cCCceEEEEEccCCCCEEEEEEC-----CCcEEEEeCCC------C--cEEEeccCCCcEE
Q 002407 592 LWHLSSKTC--LKIFS---HSDYVTCIQFNPVDDRYFISGSL-----DAKVRIWSIPE------R--QVVDWNDLHEMVT 653 (927)
Q Consensus 592 lWDl~t~~~--~~~~~---h~~~V~~v~fsp~dg~~L~sgs~-----Dg~I~IWDl~t------~--~~v~~~~~~~~V~ 653 (927)
+|++.+++. ...+. +...+..+.|+| ++++|+..+. +..|++||+.+ + ....+..+...+.
T Consensus 212 ~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (710)
T 2xdw_A 212 YHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY 290 (710)
T ss_dssp EEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE
T ss_pred EEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE
Confidence 999998763 23333 455688999999 9998887765 56799999976 4 3444555554444
Q ss_pred EEEECCCCCEEEEEECC----CeEEEEECCCCee--eeecccccccccccCCC--CCeEEEEEcCCCCcEEEEEECCCc-
Q 002407 654 AACYTPDGQGALVGSYK----GSCHLYNTSENKL--QQKSPINLQNKKKRSHQ--RKITGFQFAPGSSSEVLVTSADSR- 724 (927)
Q Consensus 654 sla~spdg~~l~tgs~D----g~I~IwDl~~~~~--~~~~~i~~~~~~~~~h~--~~Vtsl~fspdg~~~Llsgs~Dg~- 724 (927)
. .|+|+|+.|+..+.. +.|.+||+.++.. ...+ ..+. ..+..+.|.+++ .++++...++.
T Consensus 291 ~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~ 359 (710)
T 2xdw_A 291 D-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL---------VPEHEKDVLEWVACVRSN-FLVLCYLHDVKN 359 (710)
T ss_dssp E-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE---------ECCCSSCEEEEEEEETTT-EEEEEEEETTEE
T ss_pred E-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceec---------cCCCCCCeEEEEEEEcCC-EEEEEEEECCEE
Confidence 4 588999988877664 3599999987642 1111 1222 357888998654 47777778875
Q ss_pred -EEEEECC--cceEEEEeecCCcceEEEEEecCCCEEEEE-E---CCCcEEEEECCCCC
Q 002407 725 -IRVVDGI--DLVHKFKGFRNTNSQISASLTANGRYVVSA-S---EDSYVYVWKYEAES 776 (927)
Q Consensus 725 -I~VwD~~--~~~~~~~~~~~~~~v~sv~fspdg~~Lasg-s---~Dg~I~IWdl~s~~ 776 (927)
|.+||.. .....+..+ ...+..++++|++..|+.. + ..+.|++||+.+++
T Consensus 360 ~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 360 TLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 5666752 233444433 5567888999998766533 2 35789999998765
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.42 E-value=6e-12 Score=153.75 Aligned_cols=240 Identities=12% Similarity=0.068 Sum_probs=161.6
Q ss_pred ecCCCCEEEEEEcCCCCEEE-----EEeCCCcEEEEecCcCccc-ceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 453 QAHNGSIWSIKFSLDGRYLA-----SAGEDCVIHVWQVVESERK-GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~La-----Sgs~DgtVrVWdv~~~~~~-~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
.+|...+..++|||||++|| .|+.+.+|+|||+.+++.. ...
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~-------------------------------- 164 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV-------------------------------- 164 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC--------------------------------
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc--------------------------------
Confidence 36777899999999999999 4455678999999887532 100
Q ss_pred eeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCc-------------EEE
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKT-------------VRL 592 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~Dgt-------------V~l 592 (927)
+... ....++|+|| ..|+.++.|.. |++
T Consensus 165 ------------------------------------~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~ 206 (695)
T 2bkl_A 165 ------------------------------------IEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRY 206 (695)
T ss_dssp ------------------------------------BSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEE
T ss_pred ------------------------------------cCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEE
Confidence 0000 0135788888 56777877766 999
Q ss_pred EeCCCCcE--EEEEe---cCCceEEEEEccCCCCEEEEEECCC----cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCE
Q 002407 593 WHLSSKTC--LKIFS---HSDYVTCIQFNPVDDRYFISGSLDA----KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQG 663 (927)
Q Consensus 593 WDl~t~~~--~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg----~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~ 663 (927)
|++.+++. ..++. +...+..+.|+| ++++|+..+.++ .|.+|+..+++...+..+...+....+ ++|.
T Consensus 207 ~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~- 283 (695)
T 2bkl_A 207 HTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR- 283 (695)
T ss_dssp EETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-
T ss_pred EECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-
Confidence 99998862 33333 456789999999 999888877666 688888777766666666656666666 6676
Q ss_pred EEEEEC----CCeEEEEECCCCee---eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE--CC-cc
Q 002407 664 ALVGSY----KGSCHLYNTSENKL---QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GI-DL 733 (927)
Q Consensus 664 l~tgs~----Dg~I~IwDl~~~~~---~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD--~~-~~ 733 (927)
|+..+. ++.|.+||+.++.. ..... ......+..++|. + ..++++...|+..+||. .. ..
T Consensus 284 l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~--------~~~~~~l~~~~~~-~-~~lv~~~~~dg~~~l~~~~~~g~~ 353 (695)
T 2bkl_A 284 FYVLTDEGAPRQRVFEVDPAKPARASWKEIVP--------EDSSASLLSVSIV-G-GHLSLEYLKDATSEVRVATLKGKP 353 (695)
T ss_dssp EEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC--------CCSSCEEEEEEEE-T-TEEEEEEEETTEEEEEEEETTCCE
T ss_pred EEEEECCCCCCCEEEEEeCCCCCccCCeEEec--------CCCCCeEEEEEEE-C-CEEEEEEEECCEEEEEEEeCCCCe
Confidence 555544 57899999987642 11110 1124457888887 3 34788888899888875 22 22
Q ss_pred eEEEEeecCCcceEEEEEecCCCEEEEEE----CCCcEEEEECCCCC
Q 002407 734 VHKFKGFRNTNSQISASLTANGRYVVSAS----EDSYVYVWKYEAES 776 (927)
Q Consensus 734 ~~~~~~~~~~~~v~sv~fspdg~~Lasgs----~Dg~I~IWdl~s~~ 776 (927)
...+.. .....+..++++|+++.|+... ..+.|++||+.+++
T Consensus 354 ~~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 354 VRTVQL-PGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEECCC-SSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred eEEecC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 222221 1244566778899998776332 35789999998765
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-10 Score=128.57 Aligned_cols=182 Identities=10% Similarity=0.097 Sum_probs=123.4
Q ss_pred CEEEEEecCC-cEEEEEeCC---C--cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECC-------------
Q 002407 569 DVLDLSWSKS-QHLLSSSMD---K--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD------------- 629 (927)
Q Consensus 569 ~V~~l~~spd-~~L~Sgs~D---g--tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D------------- 629 (927)
.+..+.|+|+ .+|+..+.+ + .|.+|++.+++......+.. +..++|+| +++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECT-TSSEEEEEEECCCC---------C
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEccc
Confidence 4677899998 567766543 2 48888999888777766555 99999999 99988887642
Q ss_pred --------------CcEEEEeCCCCcE-EEeccCCCcEEEEEECCCCCEEEEEECCC-------eEEEEECCCCeeeeec
Q 002407 630 --------------AKVRIWSIPERQV-VDWNDLHEMVTAACYTPDGQGALVGSYKG-------SCHLYNTSENKLQQKS 687 (927)
Q Consensus 630 --------------g~I~IWDl~t~~~-v~~~~~~~~V~sla~spdg~~l~tgs~Dg-------~I~IwDl~~~~~~~~~ 687 (927)
..|.+||+.+++. ..+.. . .+..++|+|+| +++++..++ ...||.+.+++.....
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~ 214 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMF 214 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEE
T ss_pred ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEec
Confidence 5699999998887 33333 3 78899999999 777776542 3344443344432221
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECC--------CcEEEEECCcceEEEEeecCCcceEE-EEEecCCCEE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD--------SRIRVVDGIDLVHKFKGFRNTNSQIS-ASLTANGRYV 758 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D--------g~I~VwD~~~~~~~~~~~~~~~~v~s-v~fspdg~~L 758 (927)
.+ ..+..+ +|+|.. |+.++.+ ..|.+|| ......+ ...+...+.. +.|+ |+ ++
T Consensus 215 ----------~~-~~~~~~--spdg~~-l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l-~~~~~~~~~~~~~~s-dg-~~ 276 (347)
T 2gop_A 215 ----------EK-VSFYAV--DSDGER-ILLYGKPEKKYMSEHNKLYIYD-GKEVMGI-LDEVDRGVGQAKIKD-GK-VY 276 (347)
T ss_dssp ----------EE-ESEEEE--EECSSC-EEEEECCSSSCCCSSCEEEEEC-SSCEEES-STTCCSEEEEEEEET-TE-EE
T ss_pred ----------cC-cceeeE--CCCCCE-EEEEEccccCCccccceEEEEC-CCceEec-cccCCcccCCccEEc-Cc-EE
Confidence 22 344444 899884 5554433 4788888 3222221 1223455665 8999 88 99
Q ss_pred EEEECCCcEEEEECCC
Q 002407 759 VSASEDSYVYVWKYEA 774 (927)
Q Consensus 759 asgs~Dg~I~IWdl~s 774 (927)
++++.++.++|| +.+
T Consensus 277 ~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 277 FTLFEEGSVNLY-IWD 291 (347)
T ss_dssp EEEEETTEEEEE-EES
T ss_pred EEEecCCcEEEE-EcC
Confidence 999999999999 873
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-10 Score=125.28 Aligned_cols=227 Identities=11% Similarity=0.136 Sum_probs=151.6
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEE-cCCCCEEEEEeC-CCcEEEEecCcCcccceeecccc
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF-SLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vaf-SpdG~~LaSgs~-DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
.+.++...+++|.+|+...+.+..+.....-.+|...+..|++ .++++++++... ++.|++|+ .+++....+.
T Consensus 42 ~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~---- 116 (286)
T 1q7f_A 42 DIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFG---- 116 (286)
T ss_dssp CEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEEC----
T ss_pred CEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEec----
Confidence 4555556788999998764322111100011245678999999 577877766643 88999999 4555444331
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEc--cCCCCEEEEEecC
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ--GHLDDVLDLSWSK 577 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~--gH~~~V~~l~~sp 577 (927)
.........+++.+++.++++....+.+. +++..++.+..+. ++...+..|++++
T Consensus 117 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~-----------------------~~~~~g~~~~~~~~~~~~~~p~~i~~~~ 173 (286)
T 1q7f_A 117 ATILQHPRGVTVDNKGRIIVVECKVMRVI-----------------------IFDQNGNVLHKFGCSKHLEFPNGVVVND 173 (286)
T ss_dssp TTTCSCEEEEEECTTSCEEEEETTTTEEE-----------------------EECTTSCEEEEEECTTTCSSEEEEEECS
T ss_pred CccCCCceEEEEeCCCCEEEEECCCCEEE-----------------------EEcCCCCEEEEeCCCCccCCcEEEEECC
Confidence 12334567788888888777655444442 2333344444443 4556789999999
Q ss_pred CcEEE-EEeCCCcEEEEeCCCCcEEEEEec---CCceEEEEEccCCCCEEEEEECCC-cEEEEeCCCCcEEEecc-C--C
Q 002407 578 SQHLL-SSSMDKTVRLWHLSSKTCLKIFSH---SDYVTCIQFNPVDDRYFISGSLDA-KVRIWSIPERQVVDWND-L--H 649 (927)
Q Consensus 578 d~~L~-Sgs~DgtV~lWDl~t~~~~~~~~h---~~~V~~v~fsp~dg~~L~sgs~Dg-~I~IWDl~t~~~v~~~~-~--~ 649 (927)
++.|+ +...++.|++||.. ++.+..+.. ...+..|+++| +++++++...++ .|.+||.. ++.+..+. + .
T Consensus 174 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~ 250 (286)
T 1q7f_A 174 KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-GQLISALESKVKH 250 (286)
T ss_dssp SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCC
T ss_pred CCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCC
Confidence 96554 44568999999974 556666652 36789999999 888888887776 99999965 44443332 2 2
Q ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCC
Q 002407 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~ 680 (927)
..+..++++|+|+++++ +.++.|++|++..
T Consensus 251 ~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 251 AQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp SCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred CcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 35789999999986666 6799999998754
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.7e-10 Score=132.16 Aligned_cols=197 Identities=13% Similarity=0.104 Sum_probs=150.7
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCC--CCcEEEeccCCCcEEEEEE
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP--ERQVVDWNDLHEMVTAACY 657 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~--t~~~v~~~~~~~~V~sla~ 657 (927)
.+++...+++|.++|..+++.+..+.....+..+.|+| +++++++++.|+.|.+||+. +++++...........++|
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~ 247 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 247 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEE
Confidence 45667778999999999999999998777788999999 99999999999999999996 7777776666667889999
Q ss_pred C----CCCCEEEEEEC-CCeEEEEECCCCeeeeecccccccc-cccCC-CCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 658 T----PDGQGALVGSY-KGSCHLYNTSENKLQQKSPINLQNK-KKRSH-QRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 658 s----pdg~~l~tgs~-Dg~I~IwDl~~~~~~~~~~i~~~~~-~~~~h-~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
+ |||++++++.. ++.|.++|..+.+.+..+.+..... ....| ...+..+.++++++.+++.....|.|.++|.
T Consensus 248 s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~ 327 (567)
T 1qks_A 248 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 327 (567)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEec
Confidence 9 69999888765 5899999999988877654321000 00012 2368889999988866777777899999996
Q ss_pred Ccce-EEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCCCC
Q 002407 731 IDLV-HKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAESR 777 (927)
Q Consensus 731 ~~~~-~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~~~ 777 (927)
.... ..............+.|+|+|++|+++. .++.|.++|+.+++.
T Consensus 328 ~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl 376 (567)
T 1qks_A 328 TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 376 (567)
T ss_dssp TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred CCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence 5431 1112222344567889999999987766 578899999998754
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-10 Score=125.65 Aligned_cols=205 Identities=12% Similarity=0.127 Sum_probs=148.2
Q ss_pred CceEEEccCCCCEEEEEecCCcEE-EEEeCCCcEEEEeCCCCcEEEEE-ecCCceEEEEEccCCCCEEEEEECC----Cc
Q 002407 558 KPICSFQGHLDDVLDLSWSKSQHL-LSSSMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLD----AK 631 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd~~L-~Sgs~DgtV~lWDl~t~~~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~D----g~ 631 (927)
+....+..+...+.+++|++++.| +++..++.|.+||..+++..... .+...+.+++|+| +++++++...+ +.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~ 113 (333)
T 2dg1_A 35 EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGG 113 (333)
T ss_dssp EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCE
T ss_pred ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCce
Confidence 455566777778899999998555 46778899999999988876655 4677899999999 88887777666 68
Q ss_pred EEEEeCCCCcEEEec---cCCCcEEEEEECCCCCEEEEEEC------CCeEEEEECCCCeeeeecccccccccccCCCCC
Q 002407 632 VRIWSIPERQVVDWN---DLHEMVTAACYTPDGQGALVGSY------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (927)
Q Consensus 632 I~IWDl~t~~~v~~~---~~~~~V~sla~spdg~~l~tgs~------Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (927)
|.+||..++...... .....+..++++|+|+++++... .+.|..||..+++..... .....
T Consensus 114 i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~~~ 183 (333)
T 2dg1_A 114 IFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII----------QNISV 183 (333)
T ss_dssp EEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE----------EEESS
T ss_pred EEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee----------cCCCc
Confidence 999999887765332 23357899999999987776553 356777776655443221 12234
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEEEEECCc---ceEEE-----EeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 703 ITGFQFAPGSSSEVLVTSADSRIRVVDGID---LVHKF-----KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 703 Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~---~~~~~-----~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
+..++|+|++..++++...++.|.+||... ....+ ........+..++++++|+++++...++.|++|+.+
T Consensus 184 ~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 184 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 788999999875555566788999999632 22221 111112356789999999988888888999999974
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-10 Score=122.86 Aligned_cols=248 Identities=9% Similarity=0.096 Sum_probs=168.2
Q ss_pred ecCCCCEEEEEEcCCCCEEEE-------EeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCC
Q 002407 453 QAHNGSIWSIKFSLDGRYLAS-------AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaS-------gs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~ 525 (927)
...-....+++|+++|.++++ +..++.|.+|+..+++... +.
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~------------------------------ 62 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-IC------------------------------ 62 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EE------------------------------
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EE------------------------------
Confidence 334456789999999998888 5678899999876554210 00
Q ss_pred ceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEE-
Q 002407 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKI- 603 (927)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~- 603 (927)
. ....++...+..++++++ +.|+.+.....|.+||.. ++....
T Consensus 63 -----------------------------~-----~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~ 107 (314)
T 1pjx_A 63 -----------------------------K-----PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIA 107 (314)
T ss_dssp -----------------------------C-----CEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECC
T ss_pred -----------------------------e-----cccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEE
Confidence 0 000123456888999999 888877776789999998 766544
Q ss_pred Ee-----cCCceEEEEEccCCCCEEEEEECC---------------CcEEEEeCCCCcEEEeccCCCcEEEEEEC----C
Q 002407 604 FS-----HSDYVTCIQFNPVDDRYFISGSLD---------------AKVRIWSIPERQVVDWNDLHEMVTAACYT----P 659 (927)
Q Consensus 604 ~~-----h~~~V~~v~fsp~dg~~L~sgs~D---------------g~I~IWDl~t~~~v~~~~~~~~V~sla~s----p 659 (927)
.. ....+.++++.+ +++++++...+ +.|..|+.. ++.............++|+ |
T Consensus 108 ~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~ 185 (314)
T 1pjx_A 108 KKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDG 185 (314)
T ss_dssp SBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTS
T ss_pred eccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCC
Confidence 32 124588999999 88877776554 567777766 6655444444567889999 9
Q ss_pred CCCEEEEE-ECCCeEEEEECC-CCeeeeecccccccccccCCC-CCeEEEEEcCCCCcEEEEEECCCcEEEEECC--cce
Q 002407 660 DGQGALVG-SYKGSCHLYNTS-ENKLQQKSPINLQNKKKRSHQ-RKITGFQFAPGSSSEVLVTSADSRIRVVDGI--DLV 734 (927)
Q Consensus 660 dg~~l~tg-s~Dg~I~IwDl~-~~~~~~~~~i~~~~~~~~~h~-~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~--~~~ 734 (927)
+++.|+++ ..++.|.+||+. ++.......+. ....+. ..+..+++.+++. ++++...++.|.+||.. ...
T Consensus 186 dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~----~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~~ 260 (314)
T 1pjx_A 186 RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG----HIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPK 260 (314)
T ss_dssp CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE----ECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCS
T ss_pred CCCEEEEEECCCCeEEEEECCCCCccccceEEE----ECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcEe
Confidence 99766665 457899999986 44432111100 011222 5578899999885 66666788999999965 333
Q ss_pred EEEEeecCCcceEEEEEecCCCEEEE-EECCCcEEEEECCCC
Q 002407 735 HKFKGFRNTNSQISASLTANGRYVVS-ASEDSYVYVWKYEAE 775 (927)
Q Consensus 735 ~~~~~~~~~~~v~sv~fspdg~~Las-gs~Dg~I~IWdl~s~ 775 (927)
..+.. ....+.+++|+++|++|+. ...++.|..|++...
T Consensus 261 ~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 261 MRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 44433 3356889999999995554 445688999998764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-10 Score=128.16 Aligned_cols=235 Identities=11% Similarity=0.058 Sum_probs=144.6
Q ss_pred EEEecCC-cEEEEEe----------CCCcEEEEeCCCCcEEEEEec-------CCceEEEEEccCCCCEEEEEEC--CCc
Q 002407 572 DLSWSKS-QHLLSSS----------MDKTVRLWHLSSKTCLKIFSH-------SDYVTCIQFNPVDDRYFISGSL--DAK 631 (927)
Q Consensus 572 ~l~~spd-~~L~Sgs----------~DgtV~lWDl~t~~~~~~~~h-------~~~V~~v~fsp~dg~~L~sgs~--Dg~ 631 (927)
.++|+|+ ++|+++. .+++|.+||+.+.+.+..+.. ......++|+| ++++|+++.. ++.
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~ 132 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATS 132 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC-CCCEEEEECCCCCCe
Confidence 6889998 5666665 367899999999998887762 24577899999 9999998864 578
Q ss_pred EEEEeCCCCcEEEe-ccCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCC-CeeeeecccccccccccCCCCCeEEEEE
Q 002407 632 VRIWSIPERQVVDW-NDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 632 I~IWDl~t~~~v~~-~~~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
|.+||+.+++++.. +..... ..+.+.|++ ..+++.+.||.+.+|++.. ++....... .........++ .+.+
T Consensus 133 v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~---~~~~~~~~~~~-~~~~ 207 (361)
T 2oiz_A 133 IGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS---KQMFSVKDDPI-FIAP 207 (361)
T ss_dssp EEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC---CCCSCTTTSCB-CSCC
T ss_pred EEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc---cceEcCCCCce-EEEe
Confidence 99999999998877 665543 335677866 6788889999999999865 444311100 00001111121 2234
Q ss_pred cCCCCcEEEEEECCCcEEEEECCcc----eEEEEeec----CC----cceEEEEEecCCCEEEEEEC-----------CC
Q 002407 709 APGSSSEVLVTSADSRIRVVDGIDL----VHKFKGFR----NT----NSQISASLTANGRYVVSASE-----------DS 765 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~VwD~~~~----~~~~~~~~----~~----~~v~sv~fspdg~~Lasgs~-----------Dg 765 (927)
.+++. .++..+.++.|.++|.... ...+.... .. .....++|+|++++++++.. .+
T Consensus 208 ~~~g~-~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~ 286 (361)
T 2oiz_A 208 ALDKD-KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAA 286 (361)
T ss_dssp EECSS-EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCS
T ss_pred cccCC-EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCc
Confidence 56665 5566678899999996421 11111110 00 00112689999888877653 34
Q ss_pred cEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecC
Q 002407 766 YVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQD 815 (927)
Q Consensus 766 ~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d 815 (927)
.|.+||+.+.+......... .....+++++..+.+...+.+.+|+...
T Consensus 287 ~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t 334 (361)
T 2oiz_A 287 EIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQ 334 (361)
T ss_dssp EEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSS
T ss_pred eEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCC
Confidence 79999998876544432222 2223444443333333224444444333
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.6e-09 Score=112.40 Aligned_cols=278 Identities=8% Similarity=0.024 Sum_probs=183.6
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
......+.+|++.++|+++++...++.|.+|+.. ++.. .+. .......+..+...+++.++++....+.+...
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~---~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~-- 88 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFE---VPTPDAKVMCLIVSSLGDIWFTENGANKIGKL-- 88 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEE---CSSTTCCEEEEEECTTSCEEEEETTTTEEEEE--
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEE---CCCCCCcceeEEECCCCCEEEEecCCCeEEEE--
Confidence 4456789999999999988877778999999987 4322 221 11223456677777888776665434433221
Q ss_pred cccccccccccCcccccceEeecCCCce-EEEccCCCCEEEEEecCCcEEEEEe-CCCcEEEEeCCCCcEEEE-Ee-cCC
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPI-CSFQGHLDDVLDLSWSKSQHLLSSS-MDKTVRLWHLSSKTCLKI-FS-HSD 608 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i-~~l~gH~~~V~~l~~spd~~L~Sgs-~DgtV~lWDl~t~~~~~~-~~-h~~ 608 (927)
+..++.. ..+......+..+++.+++.|+.+. .++.|..||.. ++.... +. ...
T Consensus 89 ---------------------d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~ 146 (300)
T 2qc5_A 89 ---------------------SKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS 146 (300)
T ss_dssp ---------------------CTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTC
T ss_pred ---------------------CCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCC
Confidence 1121111 1112234568899999886555544 47899999988 655432 22 346
Q ss_pred ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec--cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 609 ~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~--~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
.+..+++.+ +++++++...++.|..||. +++..... .....+..+++.++|..+++....+.|.+|+. ++.....
T Consensus 147 ~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 147 YPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY 223 (300)
T ss_dssp CEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE
Confidence 789999999 8887776666788999998 56555432 22356899999999987776666778999998 4443322
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCc
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
.. ......+.++++.+++. ++++...++.|.+||.......+........+.+++++++|+++++.. . .
T Consensus 224 -~~-------~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~ 292 (300)
T 2qc5_A 224 -DI-------PTPNARPHAITAGKNSE-IWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-K 292 (300)
T ss_dssp -EC-------SSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-E
T ss_pred -EC-------CCCCCCceEEEECCCCC-EEEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-c
Confidence 11 13446689999999876 555555679999999754444443333345577899999998666654 4 6
Q ss_pred EEEEECC
Q 002407 767 VYVWKYE 773 (927)
Q Consensus 767 I~IWdl~ 773 (927)
|..++.+
T Consensus 293 i~~~~p~ 299 (300)
T 2qc5_A 293 IGKLNLN 299 (300)
T ss_dssp EEEEEEC
T ss_pred eEEeCCC
Confidence 7777653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=8.2e-10 Score=121.89 Aligned_cols=221 Identities=10% Similarity=0.095 Sum_probs=157.0
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc-ccceeecc----cccCcccc
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE-RKGELLEK----QEDGHLNM 505 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~-~~~~l~~~----~~~~~~~~ 505 (927)
++|.+|+..++++.... -.++-..+..|+|+|+|+++++...++.|++|+..... .+..+... ........
T Consensus 69 ~~i~~~d~~~g~~~~~~----~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~ 144 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSS----GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQ 144 (329)
T ss_dssp CCEEEECTTTCCEEEEE----CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSS
T ss_pred CcEEEEECCCCeEEecc----CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCC
Confidence 57899988777653322 13566789999999999999998889999999986442 23332111 01234456
Q ss_pred EEEEccCC-CCCeecccc-cCCceeeecccccccccccccCcccccceEeecCCCceEEEc----------cCCCCEEEE
Q 002407 506 LLLANGSP-EPTSLSPKH-LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ----------GHLDDVLDL 573 (927)
Q Consensus 506 v~~v~~sp-d~~~la~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~----------gH~~~V~~l 573 (927)
...++++| ++.++++.. ....+. +++..++.+..+. ++......|
T Consensus 145 P~~ia~~~~~g~lyv~d~~~~~~I~-----------------------~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gi 201 (329)
T 3fvz_A 145 PTDVAVEPSTGAVFVSDGYCNSRIV-----------------------QFSPSGKFVTQWGEESSGSSPRPGQFSVPHSL 201 (329)
T ss_dssp EEEEEECTTTCCEEEEECSSCCEEE-----------------------EECTTSCEEEEECEECCSSSCCTTEESCEEEE
T ss_pred CcEEEEeCCCCeEEEEeCCCCCeEE-----------------------EEcCCCCEEEEeccCCCCCCCCCcccCCCcEE
Confidence 77889998 788777764 455442 2333444444443 233458899
Q ss_pred EecCC-cEE-EEEeCCCcEEEEeCCCCcEEEEEe---cCCceEEEEEccCCCCEEEEEE-------CCCcEEEEeCCCCc
Q 002407 574 SWSKS-QHL-LSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGS-------LDAKVRIWSIPERQ 641 (927)
Q Consensus 574 ~~spd-~~L-~Sgs~DgtV~lWDl~t~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs-------~Dg~I~IWDl~t~~ 641 (927)
+++|+ +.| ++...++.|++|+..+++.+..+. +...+..++|+| +..+++.+ .+..|++|++.+++
T Consensus 202 a~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 202 ALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred EEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence 99998 665 455678899999999899988885 566788999998 43333332 24489999999999
Q ss_pred EEEec----cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Q 002407 642 VVDWN----DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 642 ~v~~~----~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~ 680 (927)
++..+ .+...+..++++|+|..+++...++.|++|++..
T Consensus 280 ~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 280 IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 88875 3446799999999998888888899999999754
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.2e-10 Score=121.56 Aligned_cols=211 Identities=9% Similarity=-0.046 Sum_probs=154.6
Q ss_pred CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcc
Q 002407 467 DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHM 546 (927)
Q Consensus 467 dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~ 546 (927)
.+++|++++.|+.|.+||.++++.+.++.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--------------------------------------------------- 32 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP--------------------------------------------------- 32 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE---------------------------------------------------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC---------------------------------------------------
Confidence 46789999999999999988887554431
Q ss_pred cccceEeecCCCceEEEccCC-CCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEec--CCceEEEEEccCCCCEE
Q 002407 547 VVPETVFALSDKPICSFQGHL-DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSH--SDYVTCIQFNPVDDRYF 623 (927)
Q Consensus 547 ~~~~~v~~~s~k~i~~l~gH~-~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h--~~~V~~v~fsp~dg~~L 623 (927)
.+. ..+.++.++|++.++. +.++.|+.||. +++.+..+.. ...+.++.+.| ++++|
T Consensus 33 ------------------~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~-dG~~l 91 (276)
T 3no2_A 33 ------------------LEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILP-DGNAL 91 (276)
T ss_dssp ------------------CCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECT-TSCEE
T ss_pred ------------------CCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccccEECC-CCCEE
Confidence 122 2456778888865555 56888999999 8998888873 35788999999 99999
Q ss_pred EEEEC-CCcEEEEeCCCCcEEEeccC-------CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccc
Q 002407 624 ISGSL-DAKVRIWSIPERQVVDWNDL-------HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK 695 (927)
Q Consensus 624 ~sgs~-Dg~I~IWDl~t~~~v~~~~~-------~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~ 695 (927)
++.+. ++.|..+|. +++.+..+.. +.....+++.++|+++++...++.|..||.. ++.+..+..
T Consensus 92 v~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~------ 163 (276)
T 3no2_A 92 VAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL------ 163 (276)
T ss_dssp EEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC------
T ss_pred EEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC------
Confidence 99887 777888885 5665543321 1234556789999999999999999999998 887766532
Q ss_pred ccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecC------CcceEEEEEecCCCEEEEEE
Q 002407 696 KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRN------TNSQISASLTANGRYVVSAS 762 (927)
Q Consensus 696 ~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~------~~~v~sv~fspdg~~Lasgs 762 (927)
...+.++.+.+++. +++++..++.|..+|..+....++.... ...+..+...++|.++++..
T Consensus 164 ----~~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 164 ----SGTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp ----SSCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred ----CCCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 13455677888876 6777777889999996543333333211 12367888889999888874
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.8e-10 Score=122.74 Aligned_cols=191 Identities=10% Similarity=0.087 Sum_probs=139.9
Q ss_pred EEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC
Q 002407 570 VLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH 649 (927)
Q Consensus 570 V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~ 649 (927)
...+.+..+..+++...++.|.+||..+++.+..+........|++++ ++.++++...++.|.+||..++++.......
T Consensus 46 ~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g 124 (328)
T 3dsm_A 46 AQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECP 124 (328)
T ss_dssp EEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECT
T ss_pred ceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcC
Confidence 456666555566666778999999999999999888777899999998 7755555448899999999999887655444
Q ss_pred C------cEEEEEECCCCCEEEEEE--CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 650 E------MVTAACYTPDGQGALVGS--YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 650 ~------~V~sla~spdg~~l~tgs--~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
. .+..+++ ++..|+++. .++.|.+||+.+++....+.. ......++++|++. +++++..
T Consensus 125 ~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~----------g~~p~~i~~~~dG~-l~v~~~~ 191 (328)
T 3dsm_A 125 DMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI----------GIQPTSLVMDKYNK-MWTITDG 191 (328)
T ss_dssp TCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC----------SSCBCCCEECTTSE-EEEEBCC
T ss_pred CccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc----------CCCccceEEcCCCC-EEEEECC
Confidence 4 5667777 455555555 488999999999987766432 22346788999885 4555444
Q ss_pred C----------CcEEEEECCcce--EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 722 D----------SRIRVVDGIDLV--HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 722 D----------g~I~VwD~~~~~--~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
+ +.|.+||..+.. ..+... .......++|+|++++|+++.. .|++||+.++..
T Consensus 192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp BCTTCSSCBCCCEEEEEETTTTEEEEEEECC-TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred CccCCccccCCceEEEEECCCCeEEEEEecC-CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 3 789999975433 233221 1235789999999999988755 899999987664
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-10 Score=141.41 Aligned_cols=239 Identities=15% Similarity=0.092 Sum_probs=152.6
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGED-----CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~D-----gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
+|...+..++|||||++||.+..+ ..|+|||+.+++...... ..+
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--------~~~---------------------- 209 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--------KWV---------------------- 209 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--------EEE----------------------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--------CCc----------------------
Confidence 455578899999999999987654 469999998876432110 000
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCC--------------cEEEEe
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDK--------------TVRLWH 594 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~Dg--------------tV~lWD 594 (927)
.+..++|+||+.|+.++.++ .|++|+
T Consensus 210 ----------------------------------------~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~ 249 (741)
T 1yr2_A 210 ----------------------------------------KFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHR 249 (741)
T ss_dssp ----------------------------------------ESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEE
T ss_pred ----------------------------------------eeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEE
Confidence 01234555553344444433 489999
Q ss_pred CCCCcE--EEEEe---cCCceEEEEEccCCCCEEEEEECCC-----cEEEEeCCCC--c-EEEeccCCCcEEEEEECCCC
Q 002407 595 LSSKTC--LKIFS---HSDYVTCIQFNPVDDRYFISGSLDA-----KVRIWSIPER--Q-VVDWNDLHEMVTAACYTPDG 661 (927)
Q Consensus 595 l~t~~~--~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg-----~I~IWDl~t~--~-~v~~~~~~~~V~sla~spdg 661 (927)
+.+++. ..++. +...+..+.|+| ++++|+..+.++ .|++||+.++ + ...+......+.... +|+|
T Consensus 250 lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg 327 (741)
T 1yr2_A 250 LGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVG 327 (741)
T ss_dssp TTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEET
T ss_pred CCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccC
Confidence 987762 33343 234688999999 999888877544 7999999877 5 555555554444443 4899
Q ss_pred CEEEEEECC----CeEEEEECCCC--eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE--CC-c
Q 002407 662 QGALVGSYK----GSCHLYNTSEN--KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GI-D 732 (927)
Q Consensus 662 ~~l~tgs~D----g~I~IwDl~~~--~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD--~~-~ 732 (927)
+.|+..+.+ +.|.+||+.++ ...... ..+...+..+.|. +..++++...|+..+||. .. .
T Consensus 328 ~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~---------~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~ 396 (741)
T 1yr2_A 328 DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV---------PESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGK 396 (741)
T ss_dssp TEEEEEECTTCTTCEEEEEECSSSSCEEEEEE---------CCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSC
T ss_pred CEEEEEECCCCCCCEEEEEeCCCCccccEEEe---------cCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCC
Confidence 998888764 45999999874 222221 1333456677777 344778888888877764 32 2
Q ss_pred ceEEEEeecCCcceEEEEEecCCCEEEEE-E---CCCcEEEEECCCCC
Q 002407 733 LVHKFKGFRNTNSQISASLTANGRYVVSA-S---EDSYVYVWKYEAES 776 (927)
Q Consensus 733 ~~~~~~~~~~~~~v~sv~fspdg~~Lasg-s---~Dg~I~IWdl~s~~ 776 (927)
....+.. .....+..++++|+++.|+.. + ..+.|++||+.+++
T Consensus 397 ~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 397 PAGAVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred ceeeccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 2222221 134567788999998766532 2 35789999998764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-09 Score=118.04 Aligned_cols=197 Identities=13% Similarity=0.057 Sum_probs=142.8
Q ss_pred CceEEEccCCCCEEEEEecCC-c-EEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~-~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
..+..+..+.....+++|+|+ + .++++..++.|..|+..++ ...+. +...+.+++|+| +++++++...++.|.+
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLER 94 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEE
Confidence 344555567778899999998 4 5778888999999999988 44554 677899999999 8988777766789999
Q ss_pred EeCCCCcEEEeccC-----CCcEEEEEECCCCCEEEE----EE-------------CCCeEEEEECCCCeeeeecccccc
Q 002407 635 WSIPERQVVDWNDL-----HEMVTAACYTPDGQGALV----GS-------------YKGSCHLYNTSENKLQQKSPINLQ 692 (927)
Q Consensus 635 WDl~t~~~v~~~~~-----~~~V~sla~spdg~~l~t----gs-------------~Dg~I~IwDl~~~~~~~~~~i~~~ 692 (927)
||..+++....... ...+..++++|+|+++++ |+ ..+.|..|+.. ++....
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~------ 167 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP------ 167 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE------
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe------
Confidence 99988876544322 134667999999998887 33 13466666655 433221
Q ss_pred cccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC---cc---eEEEEeecCCcceEEEEEecCCCEEEEEECCCc
Q 002407 693 NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI---DL---VHKFKGFRNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 693 ~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~---~~---~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
..+......++|+|++. .+++.+.++.|.+|+.. .+ ...+ ......+..++++++|+++++. ++.
T Consensus 168 ----~~~~~~~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~ 238 (296)
T 3e5z_A 168 ----IRDRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDG 238 (296)
T ss_dssp ----ECCCSSEEEEEECTTSC-EEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTE
T ss_pred ----ecCCCCCccEEECCCCC-EEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCe
Confidence 13455678999999998 45777788999999953 22 2223 2234445679999999877766 788
Q ss_pred EEEEECC
Q 002407 767 VYVWKYE 773 (927)
Q Consensus 767 I~IWdl~ 773 (927)
|++|+..
T Consensus 239 v~~~~~~ 245 (296)
T 3e5z_A 239 VHVLTPD 245 (296)
T ss_dssp EEEECTT
T ss_pred EEEECCC
Confidence 9999986
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-09 Score=133.80 Aligned_cols=200 Identities=9% Similarity=0.018 Sum_probs=137.7
Q ss_pred CCCCEEEEEecCC-cEEEEEeCCC-----cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCc--------
Q 002407 566 HLDDVLDLSWSKS-QHLLSSSMDK-----TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAK-------- 631 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~Sgs~Dg-----tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~-------- 631 (927)
|...+..++|+|| .+|+.+..++ +|++||+.+++.+........+..++|+| |++.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEe-CCCEEEEEEECCccccccccc
Confidence 4456889999999 5666554433 89999999998876443333477899999 9999999888766
Q ss_pred --------EEEEeCCCCc----EEEecc-CCCcEEEEEECCCCCEEEEEEC-----CCeEEEEECCC------Cee-eee
Q 002407 632 --------VRIWSIPERQ----VVDWND-LHEMVTAACYTPDGQGALVGSY-----KGSCHLYNTSE------NKL-QQK 686 (927)
Q Consensus 632 --------I~IWDl~t~~----~v~~~~-~~~~V~sla~spdg~~l~tgs~-----Dg~I~IwDl~~------~~~-~~~ 686 (927)
|++|++.+++ ++.... +...+..+.|+|||++|+..+. +..|++||+.+ +.. ...
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 9999998875 222222 3446889999999999988775 56899999976 421 111
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECC---CcEEEEECCcc----eEEEEeecCCcceEEEEEecCCCEEE
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD---SRIRVVDGIDL----VHKFKGFRNTNSQISASLTANGRYVV 759 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D---g~I~VwD~~~~----~~~~~~~~~~~~v~sv~fspdg~~La 759 (927)
+ ..+...+.. .|+|++..+++.+..+ ..|.+||.... ...+..+.....+..++|++++.+++
T Consensus 282 l---------~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 282 L---------IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp E---------ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred e---------eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 1 133334444 4788887555554433 36999996543 24444433334577889998888888
Q ss_pred EEECCCc--EEEEECCCCC
Q 002407 760 SASEDSY--VYVWKYEAES 776 (927)
Q Consensus 760 sgs~Dg~--I~IWdl~s~~ 776 (927)
+...|+. |++|++.++.
T Consensus 352 ~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp EEEETTEEEEEEEETTTCC
T ss_pred EEEECCEEEEEEEECCCCC
Confidence 9888885 5666765554
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-08 Score=105.58 Aligned_cols=194 Identities=7% Similarity=0.003 Sum_probs=140.1
Q ss_pred CCCCEEEEEecCCcEEEEEe-CCCcEEEEeCCCCcEEEEEe---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 566 HLDDVLDLSWSKSQHLLSSS-MDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs-~DgtV~lWDl~t~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
+...+..|++.+++.++.+. .++.|..|+.. ++. ..+. ....+..+++.+ ++.++++...++.|.+||. +++
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~ 130 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGK 130 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCC
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCC
Confidence 44678999999986655554 47889999986 433 3332 455789999999 8888887777889999998 665
Q ss_pred EEEec--cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 642 VVDWN--DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 642 ~v~~~--~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
..... .....+..+++.++|..+++...++.|.+||. +++.... .. ......+.++++.+++. ++++.
T Consensus 131 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~-------~~~~~~~~~i~~~~~g~-l~v~~ 200 (299)
T 2z2n_A 131 IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEF-KI-------PTPASGPVGITKGNDDA-LWFVE 200 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE-EC-------SSTTCCEEEEEECTTSS-EEEEE
T ss_pred EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEe-eC-------CCCCCcceeEEECCCCC-EEEEc
Confidence 54432 23457899999999987777767789999999 6554432 11 13345688999999876 55555
Q ss_pred ECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 720 SADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 720 s~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
..++.|.+||.......+........+..++++++|+++++...++.|.+|+..
T Consensus 201 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 201 IIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp TTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred cCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 568899999973333333333344668899999999977776678889999983
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-08 Score=115.67 Aligned_cols=274 Identities=11% Similarity=0.018 Sum_probs=172.0
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEecCcCcccceeecccccC
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG----------EDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs----------~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
.|.+|+..+.++. .++.....+ .++|+|||++|+.+. .++.|.+||..+.+...++....
T Consensus 48 ~v~v~D~~t~~~~-----~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~--- 117 (373)
T 2mad_H 48 QQWVLDAGSGSIL-----GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD--- 117 (373)
T ss_pred EEEEEECCCCeEE-----EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC---
Confidence 7888887766543 344444444 899999999998885 36789999997665444331000
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~ 580 (927)
.. .+. +......+.|+|+ ++
T Consensus 118 ---------------------------------------------------------~~-~~~-~g~~p~~~~~spDG~~ 138 (373)
T 2mad_H 118 ---------------------------------------------------------AP-RFD-VGPYSWMNANTPNNAD 138 (373)
T ss_pred ---------------------------------------------------------cc-ccc-cCCCccceEECCCCCE
Confidence 00 000 0112347889999 66
Q ss_pred EEEEeC--CCcEEEEeCCCCcEEEE-EecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc------CCCc
Q 002407 581 LLSSSM--DKTVRLWHLSSKTCLKI-FSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND------LHEM 651 (927)
Q Consensus 581 L~Sgs~--DgtV~lWDl~t~~~~~~-~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~------~~~~ 651 (927)
|+.+.. ++.|.++| .+++.+.. +..... +.+.|.....+++.+.||.+.++|. +++.+.... ....
T Consensus 139 l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p 213 (373)
T 2mad_H 139 LLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQN 213 (373)
T ss_pred EEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcc
Confidence 777764 57899999 99998887 654332 4555634566778888999999999 877663221 1111
Q ss_pred -EEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccc---ccCCCCCeEEEEEcCCCCcEEEEEE-------
Q 002407 652 -VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK---KRSHQRKITGFQFAPGSSSEVLVTS------- 720 (927)
Q Consensus 652 -V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~---~~~h~~~Vtsl~fspdg~~~Llsgs------- 720 (927)
.....+.+++..++..+..+.+.+.|+..........+.+.... ..........+.++|++..++++..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~ 293 (373)
T 2mad_H 214 LLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL 293 (373)
T ss_pred eeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccc
Confidence 23345677666655555788999999976532211111110000 0011223445789998874444433
Q ss_pred --CCCcEEEEECCcceEEEEeecCCcceEEEEEecCCC-EEEEEE-CCCcEEEEECCCCCCccc
Q 002407 721 --ADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGR-YVVSAS-EDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 721 --~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~-~Lasgs-~Dg~I~IWdl~s~~~~~~ 780 (927)
..+.|.++|..+....-... .......+.|+|||+ +++++. .++.|.+||+.+.+....
T Consensus 294 ~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 294 HAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred cCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 23579999976544332222 233578899999999 777777 589999999998765543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-09 Score=117.29 Aligned_cols=193 Identities=10% Similarity=0.027 Sum_probs=146.4
Q ss_pred cCCcEEEEEeCCCcEEEEeCCCCcEEEEEecC--CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC--Cc
Q 002407 576 SKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHS--DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH--EM 651 (927)
Q Consensus 576 spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~--~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~--~~ 651 (927)
+|++.|++++.++.|++||..+++.+..+... ..+.++.+.| ++++|+ +.++.|..||. +++++..+... ..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 46788999999999999999999999998833 4789999999 999888 45788999998 78877655543 47
Q ss_pred EEEEEECCCCCEEEEEEC-CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 652 VTAACYTPDGQGALVGSY-KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 652 V~sla~spdg~~l~tgs~-Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
+.++.+.++|+++++.+. ++.|..+|. +++.+..+.+.... ..+......+.+.+++. +|++...++.|.+||.
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~---~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~ 153 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI---ERPHAQFRQINKNKKGN-YLVPLFATSEVREIAP 153 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC---SSGGGSCSCCEECTTSC-EEEEETTTTEEEEECT
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC---CcccccccCceECCCCC-EEEEecCCCEEEEECC
Confidence 889999999999999887 788888886 56666555432110 11112344557788886 7888889999999996
Q ss_pred CcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 731 IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 731 ~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
. .....+... ......+.+.++|++++++..++.|+.||..+++..-
T Consensus 154 ~-G~~~w~~~~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w 200 (276)
T 3no2_A 154 N-GQLLNSVKL-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVR 200 (276)
T ss_dssp T-SCEEEEEEC-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEE
T ss_pred C-CCEEEEEEC-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEE
Confidence 5 333333322 2345567888999999999988899999998876543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-09 Score=111.90 Aligned_cols=234 Identities=6% Similarity=-0.027 Sum_probs=152.3
Q ss_pred CEEEEEecCCcEEEE-E-eCCCcEEEEeCCCCcEEEEE-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe
Q 002407 569 DVLDLSWSKSQHLLS-S-SMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645 (927)
Q Consensus 569 ~V~~l~~spd~~L~S-g-s~DgtV~lWDl~t~~~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~ 645 (927)
...+|++++++.|+. + ..++.|.+|+..+....... .+...+.+|++.+ +++++++.. ++.|.+||.........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678899999865555 5 67889999998765433221 2335788999999 888666655 88999999887665443
Q ss_pred cc-CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 646 ND-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 646 ~~-~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
.. ....+..+++.++|+++++...++.|.+|+..+....... ......+.++++.+++. ++++...++.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~---------~~~~~~p~~i~~~~~g~-l~v~~~~~~~ 172 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP---------FTGLNDPDGVAVDNSGN-VYVTDTDNNR 172 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC---------CCSCCSCCCEEECTTCC-EEEEEGGGTE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec---------cccCCCceeEEEeCCCC-EEEEECCCCE
Confidence 32 2357899999999997777777889999976554332211 12334578899999886 6666667889
Q ss_pred EEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEec
Q 002407 725 IRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPW 804 (927)
Q Consensus 725 I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~ 804 (927)
|.+||................+..++++++|.++++...++.|++|+............ . ......+++..
T Consensus 173 i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~--------~-~~~p~~i~~~~ 243 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFT--------G-LNTPLAVAVDS 243 (270)
T ss_dssp EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCC--------S-CSCEEEEEECT
T ss_pred EEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccC--------C-CCCceeEEECC
Confidence 99999655433332222335678999999998777777788999999866432111000 0 01122344545
Q ss_pred CCceeEEeecCCceeeccc
Q 002407 805 PGVGDTWGLQDTYLDEFST 823 (927)
Q Consensus 805 ~g~~~i~~~~d~~i~~~~~ 823 (927)
+|...+....+..+..+..
T Consensus 244 ~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 244 DRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp TCCEEEEEGGGTEEEEECC
T ss_pred CCCEEEEECCCCEEEEEcC
Confidence 5655555555556655553
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-08 Score=115.99 Aligned_cols=245 Identities=11% Similarity=0.056 Sum_probs=161.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccc
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~ 535 (927)
-...+.|+|+++|+++++...++.|++||..++......
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~----------------------------------------- 168 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH----------------------------------------- 168 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE-----------------------------------------
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee-----------------------------------------
Confidence 346889999999998888777889999998654321110
Q ss_pred ccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCC--cEEEEeCCCCcEEEEE----e-cC
Q 002407 536 INRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK--TVRLWHLSSKTCLKIF----S-HS 607 (927)
Q Consensus 536 ~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~Dg--tV~lWDl~t~~~~~~~----~-h~ 607 (927)
.. ..... ++|+++ +.|+++..++ .|.+|+...+.....+ . ..
T Consensus 169 ----------------------------~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~ 218 (409)
T 3hrp_A 169 ----------------------------PG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFS 218 (409)
T ss_dssp ----------------------------ET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSC
T ss_pred ----------------------------cc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhc
Confidence 00 11122 778888 5677777765 7999998776655444 2 44
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe----ccCCCcE--E-EEEECCC-CCEEEEEECCCeEEEEECC
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW----NDLHEMV--T-AACYTPD-GQGALVGSYKGSCHLYNTS 679 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~----~~~~~~V--~-sla~spd-g~~l~tgs~Dg~I~IwDl~ 679 (927)
..+.+++++| ++..|+.+..++.|+.||..++..... ....... . .++|+|+ +.++++-...+.|+.|+..
T Consensus 219 ~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~ 297 (409)
T 3hrp_A 219 GKIGAVALDE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD 297 (409)
T ss_dssp SCCCBCEECT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred CCcEEEEEeC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC
Confidence 6688999999 555566677788999999988765433 2112111 3 8999995 5555555667889999987
Q ss_pred CCeeeeeccc---cc-ccccccCCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEE-CCcceEEEEeec------------
Q 002407 680 ENKLQQKSPI---NL-QNKKKRSHQRKITGFQFAPGSSSEVLVTS-ADSRIRVVD-GIDLVHKFKGFR------------ 741 (927)
Q Consensus 680 ~~~~~~~~~i---~~-~~~~~~~h~~~Vtsl~fspdg~~~Llsgs-~Dg~I~VwD-~~~~~~~~~~~~------------ 741 (927)
.......-.. .. ..............+++.|++. ++++-. .++.|++|+ ....+..+.+..
T Consensus 298 g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~ 376 (409)
T 3hrp_A 298 GECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLE 376 (409)
T ss_dssp CCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTT
T ss_pred CCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhc
Confidence 5421111000 00 0000001234588999999987 677777 789999999 333344444431
Q ss_pred -CCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 742 -NTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 742 -~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
.......++++++|.++++-..++.|+.+.++
T Consensus 377 ~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 377 ATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp CCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred eEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 02357789999998888888888889888763
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-09 Score=132.13 Aligned_cols=195 Identities=12% Similarity=0.055 Sum_probs=133.6
Q ss_pred cCCCCEEEEEecCC-cEEE-----EEeCCCcEEEEeCCCCcEE-EEEecCCceEEEEEccCCCCEEEEEECCCc------
Q 002407 565 GHLDDVLDLSWSKS-QHLL-----SSSMDKTVRLWHLSSKTCL-KIFSHSDYVTCIQFNPVDDRYFISGSLDAK------ 631 (927)
Q Consensus 565 gH~~~V~~l~~spd-~~L~-----Sgs~DgtV~lWDl~t~~~~-~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~------ 631 (927)
+|...+..++|+|| .+|+ .|+.+.+|++||+.+++.+ ...........++|+| +++.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence 45667889999999 5555 2334568999999999865 2111111126899999 9999999998776
Q ss_pred -------EEEEeCCCCc----EEEec-cCCCcEEEEEECCCCCEEEEEECCC----eEEEEECCCCeeeeeccccccccc
Q 002407 632 -------VRIWSIPERQ----VVDWN-DLHEMVTAACYTPDGQGALVGSYKG----SCHLYNTSENKLQQKSPINLQNKK 695 (927)
Q Consensus 632 -------I~IWDl~t~~----~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg----~I~IwDl~~~~~~~~~~i~~~~~~ 695 (927)
|++|++.+++ ++... .+...+..+.|+|||++|+..+.++ .|++|+..++.....
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l--------- 267 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLL--------- 267 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEE---------
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEe---------
Confidence 9999998875 33222 2335788999999999998887766 677776655443222
Q ss_pred ccCCCCCeEEEEEcCCCCcEEEEEE---CCCcEEEEECCcce----EEEEeecCCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 696 KRSHQRKITGFQFAPGSSSEVLVTS---ADSRIRVVDGIDLV----HKFKGFRNTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 696 ~~~h~~~Vtsl~fspdg~~~Llsgs---~Dg~I~VwD~~~~~----~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
..+...+....+ +++. +++.+. .++.|.+||..... ..+..+.....+..++|+ ++.++++...|+..+
T Consensus 268 -~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 268 -VKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp -EECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred -ecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 133344555666 6666 555554 35889999965432 334333334457778888 778889999999988
Q ss_pred EEECC
Q 002407 769 VWKYE 773 (927)
Q Consensus 769 IWdl~ 773 (927)
||.+.
T Consensus 344 l~~~~ 348 (695)
T 2bkl_A 344 VRVAT 348 (695)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88765
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-09 Score=122.04 Aligned_cols=137 Identities=9% Similarity=0.030 Sum_probs=104.3
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 002407 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~ 644 (927)
+.. |+.|+| ....|+++ .++.|++||+.+........ |...+.++.+.+ . .++++..||.|.+||+.++....
T Consensus 87 lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~ 160 (388)
T 1xip_A 87 IPD-VIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ 160 (388)
T ss_dssp CTT-EEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE
T ss_pred CCC-eeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc
Confidence 556 999999 33777777 88999999998776555443 778888888776 2 38889999999999999887654
Q ss_pred eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCee--eeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 645 WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL--QQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~--~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
+...|++++|+|+| +++|..||.+++|+...... ...+...........|...|.+++|.+++.
T Consensus 161 ---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~ 226 (388)
T 1xip_A 161 ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD 226 (388)
T ss_dssp ---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred ---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence 34689999999999 78899999999999988775 333321111111114678899999999764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.9e-08 Score=108.10 Aligned_cols=234 Identities=9% Similarity=0.042 Sum_probs=154.5
Q ss_pred EeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 451 EIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~-~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
.|..+......+.|+|+|+ ++++...++.|..|+. +++ ..
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~------------------------------------- 79 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD------------------------------------- 79 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE-------------------------------------
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE-------------------------------------
Confidence 3445666778899999998 5667777889999976 222 11
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeC-CCcEEEEeCCCCcEEEEEe---
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSM-DKTVRLWHLSSKTCLKIFS--- 605 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~-DgtV~lWDl~t~~~~~~~~--- 605 (927)
.+..+...+..+++++++.|+++.. ++.|.+|+.. ++......
T Consensus 80 --------------------------------~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~ 126 (305)
T 3dr2_A 80 --------------------------------VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA 126 (305)
T ss_dssp --------------------------------EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEET
T ss_pred --------------------------------EEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC
Confidence 1112344578899999976766664 4789999986 55433332
Q ss_pred --cCCceEEEEEccCCCCEEEE----EEC-------------CCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEE
Q 002407 606 --HSDYVTCIQFNPVDDRYFIS----GSL-------------DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALV 666 (927)
Q Consensus 606 --h~~~V~~v~fsp~dg~~L~s----gs~-------------Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~t 666 (927)
....+..+++.| +++++++ |.. .+.|..||..+++..... .......++|+||++.|++
T Consensus 127 ~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv 204 (305)
T 3dr2_A 127 GKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYV 204 (305)
T ss_dssp TEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEE
T ss_pred CCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEE
Confidence 123467899999 8988876 332 246888887777665544 4456788999999998888
Q ss_pred EECC------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ceEEEEe
Q 002407 667 GSYK------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-LVHKFKG 739 (927)
Q Consensus 667 gs~D------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~~ 739 (927)
+... +.|.+|++....+.....+ . .........+++.++|. |.++..+ .|.+|+... ....+..
T Consensus 205 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~~-~-----~~~~~~pdgi~~d~~G~--lwv~~~~-gv~~~~~~g~~~~~~~~ 275 (305)
T 3dr2_A 205 SQTPEQGHGSVEITAFAWRDGALHDRRHF-A-----SVPDGLPDGFCVDRGGW--LWSSSGT-GVCVFDSDGQLLGHIPT 275 (305)
T ss_dssp EECCC---CCCEEEEEEEETTEEEEEEEE-E-----CCSSSCCCSEEECTTSC--EEECCSS-EEEEECTTSCEEEEEEC
T ss_pred EecCCcCCCCCEEEEEEecCCCccCCeEE-E-----ECCCCCCCeEEECCCCC--EEEecCC-cEEEECCCCCEEEEEEC
Confidence 7665 6899999876552111110 0 11233456788999886 4444444 499999643 3333333
Q ss_pred ecCCcceEEEEEecCCCEEEEEECCCcEEEEE
Q 002407 740 FRNTNSQISASLTANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 740 ~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWd 771 (927)
. ..+..++|+++++.|..++.++ |+.++
T Consensus 276 ~---~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 276 P---GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp S---SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred C---CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 2 2477899999999888887764 44444
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.08 E-value=4e-08 Score=110.86 Aligned_cols=235 Identities=8% Similarity=-0.028 Sum_probs=144.7
Q ss_pred eeeecCCCCeEEEccCceEEEEeccCccc--cc---ceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC
Q 002407 414 SSATDDSQDVSFHGQERVRVRQYGKSCKD--LT---ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 414 ~sa~~d~~~~~~~g~~~~~V~i~~~~s~~--l~---~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~ 488 (927)
..+......++++|..+ .+.+|+.+.-. +. .-+..+.+..+.+ |+.|+| |+++|+++ .++.|++||+.+.
T Consensus 42 lLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl 116 (388)
T 1xip_A 42 NLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEEL 116 (388)
T ss_dssp CEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSST
T ss_pred EEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhh
Confidence 33444445555655555 34447644322 00 0011112334777 999999 99999999 8899999998764
Q ss_pred cccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCC
Q 002407 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568 (927)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~ 568 (927)
..... ...|..
T Consensus 117 ~~~~~---------------------------------------------------------------------~~~~~~ 127 (388)
T 1xip_A 117 SEFRT---------------------------------------------------------------------VTSFEK 127 (388)
T ss_dssp TCEEE---------------------------------------------------------------------EEECSS
T ss_pred hccCc---------------------------------------------------------------------cceeec
Confidence 31111 112344
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE--EEec
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV--VDWN 646 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~--v~~~ 646 (927)
.|.++.+.+.. +++++.||+|.+||+..+.... +...|+|++|+| ++ ++.|..||++++|+...+++ ...+
T Consensus 128 ~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I 200 (388)
T 1xip_A 128 PVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEF 200 (388)
T ss_dssp CEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred ceeeEEecCCC-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCcccccccee
Confidence 56666665543 8889999999999999887654 456899999999 77 67899999999999888774 3333
Q ss_pred ----------cCCCcEEEEEECCCCCEEEEEECC-----------CeEEEEECCCCeeeee-c-cccccccc-ccCCCCC
Q 002407 647 ----------DLHEMVTAACYTPDGQGALVGSYK-----------GSCHLYNTSENKLQQK-S-PINLQNKK-KRSHQRK 702 (927)
Q Consensus 647 ----------~~~~~V~sla~spdg~~l~tgs~D-----------g~I~IwDl~~~~~~~~-~-~i~~~~~~-~~~h~~~ 702 (927)
.+...|.+++|.+++.++++=... -.++|.....+..... + .+...... .+.+...
T Consensus 201 ~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~~~~f~~~~d~~~~fg~~~R~~~~~ 280 (388)
T 1xip_A 201 SLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGSASFQETFDITPPFGQIVRFPYMY 280 (388)
T ss_dssp CCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETTEEEEEEESSSCCCCCCSCCCCCEE
T ss_pred cCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCCCceeEccccCcCCcCCccCCceee
Confidence 256789999999999988873321 1456665333332111 1 11111110 1222222
Q ss_pred eEEE-EEcCCCCcEEEEEECC-CcEEEEE
Q 002407 703 ITGF-QFAPGSSSEVLVTSAD-SRIRVVD 729 (927)
Q Consensus 703 Vtsl-~fspdg~~~Llsgs~D-g~I~VwD 729 (927)
...+ .|.|+.+.++++++.- ..|-|++
T Consensus 281 ~~~l~~w~~~~~~l~iv~Ss~S~di~il~ 309 (388)
T 1xip_A 281 KVTLSGLIEPDANVNVLASSCSSEVSIWD 309 (388)
T ss_dssp EEEEEEEEETTEEEEEEEETTCSBCEEEC
T ss_pred eeehhcccccCCcEEEEeCCCCcceEEec
Confidence 2222 4777666677666543 4466665
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.08 E-value=6.3e-08 Score=104.64 Aligned_cols=199 Identities=8% Similarity=0.072 Sum_probs=136.4
Q ss_pred ccCCCCEEEEEecCCcEEEEE--------eCCCcEEEEeCCCCcEEEEEe-----cCCceEEEEEccCC-CCEEEEEECC
Q 002407 564 QGHLDDVLDLSWSKSQHLLSS--------SMDKTVRLWHLSSKTCLKIFS-----HSDYVTCIQFNPVD-DRYFISGSLD 629 (927)
Q Consensus 564 ~gH~~~V~~l~~spd~~L~Sg--------s~DgtV~lWDl~t~~~~~~~~-----h~~~V~~v~fsp~d-g~~L~sgs~D 629 (927)
...-....+++|++++.|+.+ ..++.|.+||..+++...... +...+.++++++ + ++++++ ...
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~-~~~ 91 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVA-DMR 91 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEE-ETT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEE-ECC
Confidence 344456789999988655544 678999999998887654433 446789999999 7 655544 445
Q ss_pred CcEEEEeCCCCcEEEe-ccC-----CCcEEEEEECCCCCEEEEEECC---------------CeEEEEECCCCeeeeecc
Q 002407 630 AKVRIWSIPERQVVDW-NDL-----HEMVTAACYTPDGQGALVGSYK---------------GSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 630 g~I~IWDl~t~~~v~~-~~~-----~~~V~sla~spdg~~l~tgs~D---------------g~I~IwDl~~~~~~~~~~ 688 (927)
..|.+||.. ++.... ... ...+..+++.++|+++++...+ +.|..|+.. ++.....
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~- 168 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD- 168 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-
Confidence 579999998 776554 322 1358899999999877776554 567777765 4432221
Q ss_pred cccccccccCCCCCeEEEEEc----CCCCcEEEEEECCCcEEEEECC---cce--EEEEeec-CC-cceEEEEEecCCCE
Q 002407 689 INLQNKKKRSHQRKITGFQFA----PGSSSEVLVTSADSRIRVVDGI---DLV--HKFKGFR-NT-NSQISASLTANGRY 757 (927)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fs----pdg~~~Llsgs~Dg~I~VwD~~---~~~--~~~~~~~-~~-~~v~sv~fspdg~~ 757 (927)
.+......++|+ |++..++++...++.|.+||.. ... ..+.... .. .....++++++|++
T Consensus 169 ---------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l 239 (314)
T 1pjx_A 169 ---------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL 239 (314)
T ss_dssp ---------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred ---------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCE
Confidence 222346789999 9876445555678999999843 111 1222211 11 45678999999999
Q ss_pred EEEEECCCcEEEEECCCCC
Q 002407 758 VVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 758 Lasgs~Dg~I~IWdl~s~~ 776 (927)
+++...++.|.+|+..++.
T Consensus 240 ~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 240 LVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp EEEEETTTEEEEECTTCBS
T ss_pred EEEEcCCCEEEEEcCCCCc
Confidence 8888888999999987554
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-07 Score=104.86 Aligned_cols=186 Identities=8% Similarity=0.015 Sum_probs=121.5
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEec-----CCceEEEEEccCCCCEEEEEEC------CCcEEEEe
Q 002407 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSH-----SDYVTCIQFNPVDDRYFISGSL------DAKVRIWS 636 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h-----~~~V~~v~fsp~dg~~L~sgs~------Dg~I~IWD 636 (927)
..+.++.|++++.++.++.+ .|.+||..+++....... ...+.+++++| +++++++... .+.|..++
T Consensus 90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe
Confidence 35788999999777666655 499999988876544332 23588999999 8887665542 24566666
Q ss_pred CCCCcEEEeccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECC--CC-eeeeecccccccccccCCCCCeEEEEEcCCC
Q 002407 637 IPERQVVDWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTS--EN-KLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 637 l~t~~~v~~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~--~~-~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
+++.............++|+|+++.++++. .++.|.+|++. ++ .......+. ........+.++++.+++
T Consensus 168 --~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~----~~~~~~~~p~gi~~d~~G 241 (326)
T 2ghs_A 168 --KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI----DSTGIKGGMDGSVCDAEG 241 (326)
T ss_dssp --TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE----ECTTSSSEEEEEEECTTS
T ss_pred --CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE----ECCCCCCCCCeeEECCCC
Confidence 565544433334678999999998776654 56889999986 55 321100000 001223456789999988
Q ss_pred CcEEEEEECCCcEEEEECCc-ceEEEEeecCCcceEEEEEe-cCCCEEEEEECC
Q 002407 713 SSEVLVTSADSRIRVVDGID-LVHKFKGFRNTNSQISASLT-ANGRYVVSASED 764 (927)
Q Consensus 713 ~~~Llsgs~Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fs-pdg~~Lasgs~D 764 (927)
. ++++...++.|.+||... ....+.. ....+.+++|+ ++++.|+.++..
T Consensus 242 ~-lwva~~~~~~v~~~d~~g~~~~~i~~--~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 242 H-IWNARWGEGAVDRYDTDGNHIARYEV--PGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp C-EEEEEETTTEEEEECTTCCEEEEEEC--SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred C-EEEEEeCCCEEEEECCCCCEEEEEEC--CCCCcEEEEEecCCCCEEEEEecC
Confidence 5 566666678999999632 2333332 34468899998 888777655543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.8e-09 Score=128.11 Aligned_cols=242 Identities=13% Similarity=0.137 Sum_probs=150.4
Q ss_pred ecCCCCEEEEEEcCCCCEEEEE-----eCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 453 QAHNGSIWSIKFSLDGRYLASA-----GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSg-----s~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
.+|...|..++|||||++||-+ +...+|+|||+.+++.+....
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-------------------------------- 172 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-------------------------------- 172 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--------------------------------
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--------------------------------
Confidence 3567789999999999999843 334679999998876322110
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCC-------------CcEEEE
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD-------------KTVRLW 593 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~D-------------gtV~lW 593 (927)
.+. ....++|+ | ..|+.++.+ ..|++|
T Consensus 173 ------------------------------------~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~ 213 (693)
T 3iuj_A 173 ------------------------------------KDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFH 213 (693)
T ss_dssp ------------------------------------EEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEE
T ss_pred ------------------------------------CCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEE
Confidence 000 01234566 5 445555555 349999
Q ss_pred eCCCCcE--EEEEec----CCceEEEEEccCCCCEEEEEEC----CCcEEEEeCCCC--cEEEeccCCCcEEEEEECCCC
Q 002407 594 HLSSKTC--LKIFSH----SDYVTCIQFNPVDDRYFISGSL----DAKVRIWSIPER--QVVDWNDLHEMVTAACYTPDG 661 (927)
Q Consensus 594 Dl~t~~~--~~~~~h----~~~V~~v~fsp~dg~~L~sgs~----Dg~I~IWDl~t~--~~v~~~~~~~~V~sla~spdg 661 (927)
++.+... ..++.. ...+..+.|+| ++++|+.... ...|+++|+.++ +...+.......... ++++|
T Consensus 214 ~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g 291 (693)
T 3iuj_A 214 RLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKG 291 (693)
T ss_dssp ETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEET
T ss_pred ECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccC
Confidence 9987653 344432 33578899999 8888765433 247999999776 455555555544444 66777
Q ss_pred CEEEEEECC----CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC--cEEEEECCcceE
Q 002407 662 QGALVGSYK----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS--RIRVVDGIDLVH 735 (927)
Q Consensus 662 ~~l~tgs~D----g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg--~I~VwD~~~~~~ 735 (927)
..|+..+.. +.|.++|+.++.......+ ..+...+. .|++++..++++...++ .|++||......
T Consensus 292 ~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l-------~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~ 362 (693)
T 3iuj_A 292 STLYLLTNRDAPNRRLVTVDAANPGPAHWRDL-------IPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV 362 (693)
T ss_dssp TEEEEEECTTCTTCEEEEEETTSCCGGGCEEE-------ECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE
T ss_pred CEEEEEECCCCCCCEEEEEeCCCCCccccEEE-------ecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee
Confidence 766655542 5799999987653110011 13334444 78888875555555555 688888653322
Q ss_pred EEEeecCCcceEEEEEecCCCEEEEEECC----CcEEEEECCCCC
Q 002407 736 KFKGFRNTNSQISASLTANGRYVVSASED----SYVYVWKYEAES 776 (927)
Q Consensus 736 ~~~~~~~~~~v~sv~fspdg~~Lasgs~D----g~I~IWdl~s~~ 776 (927)
..........+..+.++++++.|+....+ +.|+.||+.+++
T Consensus 363 ~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 363 REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 22222234456677788888876655444 789999997754
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-07 Score=102.89 Aligned_cols=187 Identities=10% Similarity=0.128 Sum_probs=123.4
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEec-----CCceEEEEEccCCCCEEEEEECC---------CcEE
Q 002407 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSH-----SDYVTCIQFNPVDDRYFISGSLD---------AKVR 633 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h-----~~~V~~v~fsp~dg~~L~sgs~D---------g~I~ 633 (927)
..+.++++++++.|+.+. +..|.+||..+++....... ...+..+++.| +++++++.... ....
T Consensus 54 ~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~ 131 (297)
T 3g4e_A 54 APVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGA 131 (297)
T ss_dssp SCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEE
T ss_pred CceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcE
Confidence 457889999996666665 56899999998876544432 23578999999 88876654321 2234
Q ss_pred EEeCC-CCcEEEeccCCCcEEEEEECCCCCEEEEE-ECCCeEEEEEC--CCCeeeeecccccccccccCCCCCeEEEEEc
Q 002407 634 IWSIP-ERQVVDWNDLHEMVTAACYTPDGQGALVG-SYKGSCHLYNT--SENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 634 IWDl~-t~~~v~~~~~~~~V~sla~spdg~~l~tg-s~Dg~I~IwDl--~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
||.+. .++...........+.++|+|+++.|+++ +.++.|.+|++ .++.+.....+. ........+..+++.
T Consensus 132 l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~----~~~~~~~~p~g~~~d 207 (297)
T 3g4e_A 132 LYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVY----KLEKEEQIPDGMCID 207 (297)
T ss_dssp EEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEE----ECCGGGCEEEEEEEB
T ss_pred EEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEE----ECCCCCCCCCeeEEC
Confidence 55443 24444444444567899999999977554 55788999987 455432211100 001223567899999
Q ss_pred CCCCcEEEEEECCCcEEEEECC--cceEEEEeecCCcceEEEEEe-cCCCEEEEEEC
Q 002407 710 PGSSSEVLVTSADSRIRVVDGI--DLVHKFKGFRNTNSQISASLT-ANGRYVVSASE 763 (927)
Q Consensus 710 pdg~~~Llsgs~Dg~I~VwD~~--~~~~~~~~~~~~~~v~sv~fs-pdg~~Lasgs~ 763 (927)
++|. ++++....+.|.+||.. +.+..+.. ....+++++|. |+++.|+.++.
T Consensus 208 ~~G~-lwva~~~~~~v~~~d~~tG~~~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 208 AEGK-LWVACYNGGRVIRLDPVTGKRLQTVKL--PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTSC-EEEEEETTTEEEEECTTTCCEEEEEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCC-EEEEEcCCCEEEEEcCCCceEEEEEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence 9985 66677778889999964 44444443 34568999998 88887765553
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-07 Score=106.67 Aligned_cols=170 Identities=11% Similarity=0.024 Sum_probs=120.1
Q ss_pred cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEE----------CCCcEEEEeCCCCcEEEeccCC--------C
Q 002407 589 TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS----------LDAKVRIWSIPERQVVDWNDLH--------E 650 (927)
Q Consensus 589 tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs----------~Dg~I~IWDl~t~~~v~~~~~~--------~ 650 (927)
+|.+||..+++.+..+.....- .++|+| ++++|+++. .++.|.+||..+.+.+...... .
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~ 125 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP-NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP 125 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC-CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence 8999999999988877743333 999999 999988876 3678999999988877654332 2
Q ss_pred cEEEEEECCCCCEEEEEEC--CCeEEEEECCCCeeeee-cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 651 MVTAACYTPDGQGALVGSY--KGSCHLYNTSENKLQQK-SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~--Dg~I~IwDl~~~~~~~~-~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
....+.|+|||++|+++.. ++.|.++| .+++.... +.+ . .++.+.|.+...+++.+.|+.+.+
T Consensus 126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~----------~---~~~~~~~~~~~~~~~~~~dg~~~~ 191 (373)
T 2mad_H 126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS----------P---TCYHIHPGAPSTFYLLCAQGGLAK 191 (373)
T ss_pred CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC----------C---ceEEEEeCCCceEEEEcCCCCEEE
Confidence 4568999999999999874 47899999 99887655 432 1 124566777667788889999999
Q ss_pred EECCcceEEEEee-----cCCcce-EEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 728 VDGIDLVHKFKGF-----RNTNSQ-ISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 728 wD~~~~~~~~~~~-----~~~~~v-~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
+|. ......... ....++ ....+.+++..++..+..+.|++.|+.+.
T Consensus 192 vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 192 TDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred EEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence 997 432221110 111111 23456666655555557889999998754
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.03 E-value=7.2e-07 Score=95.16 Aligned_cols=194 Identities=7% Similarity=-0.007 Sum_probs=138.9
Q ss_pred CCCCEEEEEecCCcEEEEEe-CCCcEEEEeCCCCcEEEEEe---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 566 HLDDVLDLSWSKSQHLLSSS-MDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs-~DgtV~lWDl~t~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
+...+..|++.+++.|+.+. .++.|..||.. ++.. .+. ....+..+++.+ +++++++...++.|..||.. ++
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GT 135 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SC
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CC
Confidence 34678899999886555555 47889999988 5543 333 346789999998 88888777668899999987 66
Q ss_pred EEEec-c-CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 642 VVDWN-D-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 642 ~v~~~-~-~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
..... . ....+..+++.++|+.+++...++.|..||. +++... +.. ......+.++++.+++. ++++.
T Consensus 136 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~-------~~~~~~~~~i~~d~~g~-l~v~~ 205 (300)
T 2qc5_A 136 IYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPL-------PTNAAAPVGITSGNDGA-LWFVE 205 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC-------SSTTCCEEEEEECTTSS-EEEEE
T ss_pred EEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeC-------CCCCCCcceEEECCCCC-EEEEc
Confidence 55432 2 3457899999999996666666788999998 554432 111 13345688999999875 55555
Q ss_pred ECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 720 SADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 720 s~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
...+.|.+||.......+........+..++++++|++.++...++.|.+|+..
T Consensus 206 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 206 IMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp TTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred cCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 567789999974333333333334567899999999977776667889999873
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-08 Score=114.63 Aligned_cols=275 Identities=11% Similarity=0.077 Sum_probs=175.7
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEecCcCcccceeeccccc
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG----------EDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs----------~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
+.|.++|..+.++.... ..-..+ .|+|+|||++|+.+. .++.|.++|..+.+...++......
T Consensus 99 ~~VsVID~~t~~vv~~I-----~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~ 171 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMT-----DGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP 171 (426)
T ss_dssp EEEEEEETTTTEEEEEE-----EECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CeEEEEECCCCEEEEEE-----ECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence 78999998877665433 323344 799999999888775 4678999999887765554210000
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-c
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q 579 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~ 579 (927)
. + ........+.++|+ +
T Consensus 172 ---------------r----------------------------------------------~-~~g~~P~~~~~spDGk 189 (426)
T 3c75_H 172 ---------------R----------------------------------------------F-LVGTYQWMNALTPDNK 189 (426)
T ss_dssp ---------------C----------------------------------------------C-CBSCCGGGSEECTTSS
T ss_pred ---------------c----------------------------------------------c-ccCCCcceEEEcCCCC
Confidence 0 0 00011234678898 5
Q ss_pred EEEEEeC--CCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe----ccCCC-c-
Q 002407 580 HLLSSSM--DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW----NDLHE-M- 651 (927)
Q Consensus 580 ~L~Sgs~--DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~----~~~~~-~- 651 (927)
+|+.+.. +++|.+.|+.+++.+..+.-... ....|.....+++.+.||.+.+.++.++++... +.... .
T Consensus 190 ~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~ 266 (426)
T 3c75_H 190 NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELL 266 (426)
T ss_dssp EEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCB
T ss_pred EEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCce
Confidence 6777764 57899999999999988874332 334452446777888899988888866665521 11111 1
Q ss_pred EEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccccc---CCCCCeEEEEEcCCCCcEEEEEEC-------
Q 002407 652 VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKR---SHQRKITGFQFAPGSSSEVLVTSA------- 721 (927)
Q Consensus 652 V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~---~h~~~Vtsl~fspdg~~~Llsgs~------- 721 (927)
...+.|.+++..++.....+.+.+.|+..........+.+...... ........++++|++..++++...
T Consensus 267 ~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk 346 (426)
T 3c75_H 267 INHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHK 346 (426)
T ss_dssp CSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTT
T ss_pred eeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccccc
Confidence 1235689999988888889999999997655332211111000000 011112236899998855554431
Q ss_pred --CCcEEEEECCcc--eEEEEeecCCcceEEEEEecCCC-EEEEEE-CCCcEEEEECCCCCCccc
Q 002407 722 --DSRIRVVDGIDL--VHKFKGFRNTNSQISASLTANGR-YVVSAS-EDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 722 --Dg~I~VwD~~~~--~~~~~~~~~~~~v~sv~fspdg~-~Lasgs-~Dg~I~IWdl~s~~~~~~ 780 (927)
.+.|.++|..+. +..+... .....+.|+|||+ +++++. .++.|.|+|+.+.+...+
T Consensus 347 ~~s~~VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 347 AASRFVVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 357999996544 3333322 2467899999999 888888 589999999998765433
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.02 E-value=5.4e-08 Score=109.49 Aligned_cols=275 Identities=12% Similarity=0.102 Sum_probs=170.3
Q ss_pred ceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEecCcCcccceeecccc
Q 002407 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG----------EDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 430 ~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs----------~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
.++|.+++..+.++.. ++..-..+ . |+++|||++|+.+. .++.|.+||..+.+...++....
T Consensus 58 ~~~V~ViD~~t~~v~~-----~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~- 129 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIG-----MIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD- 129 (386)
T ss_dssp SEEEEEEETTTTEEEE-----EEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT-
T ss_pred CCEEEEEECCCCeEEE-----EEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCC-
Confidence 5789999887766543 33333444 4 99999999887765 36789999998877655542100
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
+... .....-..+.++|+
T Consensus 130 ---------------g~r~----------------------------------------------~~g~~P~~~a~spDG 148 (386)
T 3sjl_D 130 ---------------APRF----------------------------------------------LVGTYPWMTSLTPDG 148 (386)
T ss_dssp ---------------CCCC----------------------------------------------CBSCCGGGEEECTTS
T ss_pred ---------------cccc----------------------------------------------ccCCCCceEEEcCCC
Confidence 0000 00112235788998
Q ss_pred cEEEEEeC--CCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEEecc-C---C-C
Q 002407 579 QHLLSSSM--DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDWND-L---H-E 650 (927)
Q Consensus 579 ~~L~Sgs~--DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~~~~-~---~-~ 650 (927)
.+|+.+.. ++.|.++|+.+++.+.++.-... ..+.|...+.+++.+.||++.+.++.+ +++..... . . .
T Consensus 149 k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~ 225 (386)
T 3sjl_D 149 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 225 (386)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS
T ss_pred CEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccc
Confidence 56776654 68999999999999998864432 223353667788889999999999976 55533111 1 1 1
Q ss_pred cE-EEEEE-CCCCCEEEEEECCCeEEEEECCCCeeeeeccccc-c--cccccCCCCCeEEEEEcCCCCcEEEEEEC----
Q 002407 651 MV-TAACY-TPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL-Q--NKKKRSHQRKITGFQFAPGSSSEVLVTSA---- 721 (927)
Q Consensus 651 ~V-~sla~-spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~-~--~~~~~~h~~~Vtsl~fspdg~~~Llsgs~---- 721 (927)
.+ ....| .++|++++ .+.+|.|++.|+.+........+.+ . ..........+..+++++++..++++...
T Consensus 226 ~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~ 304 (386)
T 3sjl_D 226 FLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 304 (386)
T ss_dssp CBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred cccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence 22 12355 36776555 5568999999997764322211110 0 00000112233356778888754444331
Q ss_pred -----CCcEEEEECCcc--eEEEEeecCCcceEEEEEecCCC-EEEEEE-CCCcEEEEECCCCCCccc
Q 002407 722 -----DSRIRVVDGIDL--VHKFKGFRNTNSQISASLTANGR-YVVSAS-EDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 722 -----Dg~I~VwD~~~~--~~~~~~~~~~~~v~sv~fspdg~-~Lasgs-~Dg~I~IWdl~s~~~~~~ 780 (927)
...|.++|..+. +..+.. ...+..+.|++|++ +|+++. .++.|.++|..+++....
T Consensus 305 ~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 305 RHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred ccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 257999996543 333332 23567899999997 666654 589999999998765433
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.6e-08 Score=121.21 Aligned_cols=193 Identities=15% Similarity=0.087 Sum_probs=125.9
Q ss_pred CCCCEEEEEecCC-cEEEEEeCC-----CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCc--------
Q 002407 566 HLDDVLDLSWSKS-QHLLSSSMD-----KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAK-------- 631 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~Sgs~D-----gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~-------- 631 (927)
|...+..++|+|| .+|+.++.+ .+|++||+.+++.+....+...+..++|+| + +.|+.+..++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEEST-T-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEEC-C-CEEEEEEecCccccccccc
Confidence 3345778999999 566655443 469999999998866433333346889999 8 88888877654
Q ss_pred ------EEEEeCCCCc----EEEecc-CCCcEEEEEECCCCCEEEEEECCC-----eEEEEECCCCee--eeeccccccc
Q 002407 632 ------VRIWSIPERQ----VVDWND-LHEMVTAACYTPDGQGALVGSYKG-----SCHLYNTSENKL--QQKSPINLQN 693 (927)
Q Consensus 632 ------I~IWDl~t~~----~v~~~~-~~~~V~sla~spdg~~l~tgs~Dg-----~I~IwDl~~~~~--~~~~~i~~~~ 693 (927)
|++|++.+++ ++.... +...+..+.|+|||++|+..+.++ .|++||+.++.. ...+
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l------ 312 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL------ 312 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE------
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe------
Confidence 8999997765 222211 223588999999999998887654 799999987621 1111
Q ss_pred ccccCCCCCeEEEEEcCCCCcEEEEEEC----CCcEEEEECCcc---eEEEEeecCCcceEEEEEecCCCEEEEEECCCc
Q 002407 694 KKKRSHQRKITGFQFAPGSSSEVLVTSA----DSRIRVVDGIDL---VHKFKGFRNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 694 ~~~~~h~~~Vtsl~fspdg~~~Llsgs~----Dg~I~VwD~~~~---~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
..+...+.... .|++. .|+..+. .+.|.+||.... ...+... ....+..++|+ ++.++++...|+.
T Consensus 313 ---~~~~~~~~~~~-~~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 313 ---IPDLKAQWDFV-DGVGD-QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp ---ECSSSSCEEEE-EEETT-EEEEEECTTCTTCEEEEEECSSSSCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTE
T ss_pred ---cCCCCceEEEE-eccCC-EEEEEECCCCCCCEEEEEeCCCCccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCE
Confidence 12233344443 47777 4555544 345999996542 2222222 23345567777 6678888889998
Q ss_pred EEEEECC
Q 002407 767 VYVWKYE 773 (927)
Q Consensus 767 I~IWdl~ 773 (927)
.+||.+.
T Consensus 386 ~~l~~~~ 392 (741)
T 1yr2_A 386 SQVLAFD 392 (741)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 7777664
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.99 E-value=4e-08 Score=109.03 Aligned_cols=204 Identities=10% Similarity=0.047 Sum_probs=133.5
Q ss_pred cCCCCEEEEEecCCcEEEEEeC------CCcEEEEeCCCCcEEEEEec-------CCceEEEEEccCCCCEEEEEE---C
Q 002407 565 GHLDDVLDLSWSKSQHLLSSSM------DKTVRLWHLSSKTCLKIFSH-------SDYVTCIQFNPVDDRYFISGS---L 628 (927)
Q Consensus 565 gH~~~V~~l~~spd~~L~Sgs~------DgtV~lWDl~t~~~~~~~~h-------~~~V~~v~fsp~dg~~L~sgs---~ 628 (927)
+|...+..+++.+++.|+.... +..|.+||+.+++.+..+.. ...+..++++|.++..+++-. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 3566789999999977766653 57899999999988777652 235689999983344445554 5
Q ss_pred CCcEEEEeCCCCcEEEeccC------------------------------CCcEEEEEECCCCCEEEEEECCC-eEEEEE
Q 002407 629 DAKVRIWSIPERQVVDWNDL------------------------------HEMVTAACYTPDGQGALVGSYKG-SCHLYN 677 (927)
Q Consensus 629 Dg~I~IWDl~t~~~v~~~~~------------------------------~~~V~sla~spdg~~l~tgs~Dg-~I~IwD 677 (927)
++.|.+||+.+++....... ...+..++|+|+|+.|+++...+ .+..++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 78899999988877664422 12368899999999988887766 455554
Q ss_pred CC---CCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC-CcceEEEEeecCCcceEEEEEec
Q 002407 678 TS---ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG-IDLVHKFKGFRNTNSQISASLTA 753 (927)
Q Consensus 678 l~---~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~-~~~~~~~~~~~~~~~v~sv~fsp 753 (927)
.. .+... ...+... ....++......+++.+++. ++++...++.|.+||. ......+...........++|.+
T Consensus 224 ~~~~~~~~~~-~~~~~~~-~~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~ 300 (343)
T 2qe8_A 224 SADLSNLQLT-DAELGSK-IERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGS 300 (343)
T ss_dssp HHHHTCTTCC-HHHHHTT-CEEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECT
T ss_pred HHHhcCCCCC-hhhhhcc-eEecccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECC
Confidence 32 11100 0000000 00012233566789999875 7777788899999997 33223332222244578999999
Q ss_pred CCCEEEEEECCCcEEEEE
Q 002407 754 NGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 754 dg~~Lasgs~Dg~I~IWd 771 (927)
+++++++.+..+.+.+|.
T Consensus 301 ~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 301 DGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp TSCEEEEECCGGGSGGGB
T ss_pred CCcEEEEeCccccccccc
Confidence 998888887655554444
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-07 Score=101.70 Aligned_cols=199 Identities=11% Similarity=0.091 Sum_probs=135.8
Q ss_pred cCCCCEEEEEecCC-cE-EEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE
Q 002407 565 GHLDDVLDLSWSKS-QH-LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642 (927)
Q Consensus 565 gH~~~V~~l~~spd-~~-L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~ 642 (927)
.+..-.....|+++ +. +++....+.|+.||..+++. ..+.....+.+++++| +++++++ . +..|.+||..+++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcE
Confidence 34445678899985 54 55666789999999998765 4556678899999999 8885554 4 56899999988876
Q ss_pred EEeccC-----CCcEEEEEECCCCCEEEEEECC-----------CeEEEEECCCCeeeeecccccccccccCCCCCeEEE
Q 002407 643 VDWNDL-----HEMVTAACYTPDGQGALVGSYK-----------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGF 706 (927)
Q Consensus 643 v~~~~~-----~~~V~sla~spdg~~l~tgs~D-----------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl 706 (927)
..+... ...+..++++|+|+++++.... +.|+.++.. ++.... .......+.+
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~----------~~~~~~pngi 154 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKY----------FDQVDISNGL 154 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEE----------EEEESBEEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEE----------eeccccccce
Confidence 544322 2358899999999966654321 234444443 222211 1223446789
Q ss_pred EEcCCCCcEEEEEECCCcEEEEECC--c--c--eEEEEee-cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 707 QFAPGSSSEVLVTSADSRIRVVDGI--D--L--VHKFKGF-RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 707 ~fspdg~~~Llsgs~Dg~I~VwD~~--~--~--~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
+|+|++..++++.+.++.|.+|+.. . + ...+... ........++++++|++.++....+.|.+|+..+++..
T Consensus 155 ~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 155 DWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL 233 (297)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred EEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence 9999998666677778999999842 1 1 1222211 12345678999999998888888888999999876543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-05 Score=98.63 Aligned_cols=313 Identities=10% Similarity=0.053 Sum_probs=195.7
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecc--c
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK--Q 498 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~--~ 498 (927)
...+|.|....-|..|+...+++..... ..+...|.+|...++|.+.+ |..++-|.+|+..+++...-.... .
T Consensus 183 ~g~lwigt~~~Gl~~~~~~~~~~~~~~~----~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~ 257 (795)
T 4a2l_A 183 GDQIYIGTSTDGLYTYSITQKTFEKVIP----ILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNP 257 (795)
T ss_dssp TTEEEEEESSSCEEEEETTTCCEEECC--------CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCT
T ss_pred CCCEEEEECCCCEEEEeCCCCeEEEecC----CCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCc
Confidence 3456777765457788876665533211 12456799999988887555 444445888998765432211100 0
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEc--------cCCCCE
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ--------GHLDDV 570 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~--------gH~~~V 570 (927)
..-....|.++...+++.+.+.... +.... +........+. -....|
T Consensus 258 ~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~------------------------~~~~~~~~~~~~~~~~~~~l~~~~i 312 (795)
T 4a2l_A 258 KSISSNYIRSLAMDSQNRLWIGTFN-DLNIY------------------------HEGTDSFASYSSNPVENGSLSQRSV 312 (795)
T ss_dssp TSCSCSBEEEEEECTTSCEEEEESS-CEEEE------------------------ETTTTEEEEECCCTTSTTSCSSSCE
T ss_pred cccCCCeEEEEEEcCCCCEEEEeCC-hhheE------------------------cCCCCeEEEEecCCCCCCCCCCCcE
Confidence 1112355777777777776665432 32211 11111111111 123579
Q ss_pred EEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-------cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE
Q 002407 571 LDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (927)
Q Consensus 571 ~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v 643 (927)
.+|...+++.|..|+.++-|..|+..+........ ....|.++...+ +++ |..|+.++-|..|+..+++..
T Consensus 313 ~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~~~~~~~~ 390 (795)
T 4a2l_A 313 RSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGGLNLYNPITQRFT 390 (795)
T ss_dssp EEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSCEEEECTTTCCEE
T ss_pred EEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCCeEEEcCCCCcEE
Confidence 99999888999999999999999977655433221 235689999887 665 556778878999998887765
Q ss_pred Eecc---------CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 644 DWND---------LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 644 ~~~~---------~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
.... ....|.+++..++|..|.+|+.++-|.+||..+++....... ........|.++...+++.
T Consensus 391 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~-----~~~l~~~~v~~i~~d~~g~- 464 (795)
T 4a2l_A 391 SYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR-----NSQLVNENVYAILPDGEGN- 464 (795)
T ss_dssp EECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT-----TSCCSCSCEEEEEECSSSC-
T ss_pred EEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC-----CCCcCCCeeEEEEECCCCC-
Confidence 5431 135789999988888678888878899999988765433210 0012346799999888774
Q ss_pred EEEEEECCCcEEEEECCcceEE-EEee-----cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 715 EVLVTSADSRIRVVDGIDLVHK-FKGF-----RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 715 ~Llsgs~Dg~I~VwD~~~~~~~-~~~~-----~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|.+++. +.|.+||....... +... .....|.++...++|++.+... +.|+.|+..+.
T Consensus 465 -lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~ 527 (795)
T 4a2l_A 465 -LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGL 527 (795)
T ss_dssp -EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETT
T ss_pred -EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCC
Confidence 566666 56888986543222 2111 1235688888889888766554 45889987654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.4e-07 Score=104.45 Aligned_cols=202 Identities=8% Similarity=-0.000 Sum_probs=141.5
Q ss_pred CCEEEEEecCCcEEEEE-eCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC--cEEEEeCCCCcEEE
Q 002407 568 DDVLDLSWSKSQHLLSS-SMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA--KVRIWSIPERQVVD 644 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sg-s~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg--~I~IWDl~t~~~v~ 644 (927)
.....|+|++++.|+.+ ..++.|++||..++............. ++|+| ++++|+++..++ .|.+|+...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 46789999998665555 456899999999888776665444444 99999 888888888766 78888887655432
Q ss_pred ec----c-CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCC--eEEEEEcCCCCcEEE
Q 002407 645 WN----D-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK--ITGFQFAPGSSSEVL 717 (927)
Q Consensus 645 ~~----~-~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~--Vtsl~fspdg~~~Ll 717 (927)
.. . ....+..++++|++..|+++..++.|+.||..++.......... ...... ...++|+|++..+++
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~-----~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLEL-----SGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCC-----CSCCCCSSCCEEEEETTTTEEEE
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccc-----cCCCCCCccccEEEeCCCCEEEE
Confidence 22 2 34567889999965566667778899999998775432211000 111111 138999997665677
Q ss_pred EEECCCcEEEEECCcceEEEEeec-------------CCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCCC
Q 002407 718 VTSADSRIRVVDGIDLVHKFKGFR-------------NTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAES 776 (927)
Q Consensus 718 sgs~Dg~I~VwD~~~~~~~~~~~~-------------~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~~ 776 (927)
+-...+.|+.|+.......+.+.. .......++++++|+++++-. .++.|+.|++.++.
T Consensus 284 ~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 777889999999654444444432 023467899999999888777 78899999976543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-06 Score=95.55 Aligned_cols=190 Identities=11% Similarity=0.018 Sum_probs=130.5
Q ss_pred CCEEEEEecCC-cE-EEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe
Q 002407 568 DDVLDLSWSKS-QH-LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645 (927)
Q Consensus 568 ~~V~~l~~spd-~~-L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~ 645 (927)
.-...+.|+++ +. +++...++.|..||..+++.. .+.....+.+++|.| +++++++. . ..|.+||..+++....
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~-dg~l~v~~-~-~gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKIS-DSKQLIAS-D-DGLFLRDTATGVLTLH 124 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEE-TTEEEEEE-T-TEEEEEETTTCCEEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeC-CCeEEEEE-C-CCEEEEECCCCcEEEE
Confidence 34567899996 54 556667889999999887643 445667899999999 88776654 4 4599999988876554
Q ss_pred ccC-----CCcEEEEEECCCCCEEEEEEC------CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 646 NDL-----HEMVTAACYTPDGQGALVGSY------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 646 ~~~-----~~~V~sla~spdg~~l~tgs~------Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
... ...+..++++|+|+++++... .+.|..++ +++..... ........++|+|++..
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~----------~~~~~~~~i~~s~dg~~ 192 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF----------ADISIPNSICFSPDGTT 192 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE----------EEESSEEEEEECTTSCE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee----------CCCcccCCeEEcCCCCE
Confidence 332 136889999999997665432 24566666 45433211 12234678999999875
Q ss_pred EEEEEECCCcEEEEECC--cc-----eEEEEee-cCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 715 EVLVTSADSRIRVVDGI--DL-----VHKFKGF-RNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 715 ~Llsgs~Dg~I~VwD~~--~~-----~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
++++...++.|.+||.. .. ...+... ........++++++|.+.++...++.|.+|+..
T Consensus 193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred EEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 55665667899999953 21 1223222 123446689999999988877777889999873
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.85 E-value=9.2e-08 Score=104.14 Aligned_cols=296 Identities=12% Similarity=0.060 Sum_probs=170.3
Q ss_pred CCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccc
Q 002407 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 419 d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
|....+|.+..++.|..|+ .++++... +..+...+.++.+.++|.+++ ++.+ |..+|. +++....+....
T Consensus 28 d~~g~l~v~t~~~~l~~~d-~~g~~~~~-----~~~~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~ 97 (330)
T 3hxj_A 28 AKNGTIYLGSSNKNLYAIN-TDGSVKWF-----FKSGEIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKK 97 (330)
T ss_dssp CTTSCEECSSTTTTTEEEC-TTSCEEES-----SCGGGEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC--
T ss_pred ccCCeEEEEcCCCEEEEEC-CCCcEEEE-----EecCCCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCC
Confidence 3344567777777777787 55443221 123445667888888876444 4444 888885 555443332110
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd 578 (927)
. ... ...+. ++.+.+.. .++.+. .++..++.+..+..+...+.++...++
T Consensus 98 ~--~~~-~~~~~---~~~l~v~t-~~~~l~-----------------------~~d~~g~~~~~~~~~~~~~~~~~~~~~ 147 (330)
T 3hxj_A 98 A--IVS-DFTIF---EDILYVTS-MDGHLY-----------------------AINTDGTEKWRFKTKKAIYATPIVSED 147 (330)
T ss_dssp -----C-CEEEE---TTEEEEEC-TTSEEE-----------------------EECTTSCEEEEEECSSCCCSCCEECTT
T ss_pred C--ccc-CceEE---CCEEEEEe-cCCEEE-----------------------EEcCCCCEEEEEcCCCceeeeeEEcCC
Confidence 0 000 01111 33333222 222221 112222333333334444556666777
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAAC 656 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla 656 (927)
+.|+.++.++.|..+|.. ++.+..+. ....+.++.+.+ ++.+++ ++ +.|..|| .+++.+... .....+.++.
T Consensus 148 g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~ 221 (330)
T 3hxj_A 148 GTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPA 221 (330)
T ss_dssp SCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCE
T ss_pred CEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceE
Confidence 888899999999999999 87776666 445667777766 666444 44 8899999 666655433 3335677888
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEE
Q 002407 657 YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHK 736 (927)
Q Consensus 657 ~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~ 736 (927)
+.++|. |.+++.++.|..+|.. +....... .....+..+.+.+++ .|.+++.++.|..+|.. ....
T Consensus 222 ~~~~g~-l~v~t~~~gl~~~~~~-g~~~~~~~---------~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~~-g~~~ 287 (330)
T 3hxj_A 222 ISEDGT-IYVTSLDGHLYAINPD-GTEKWRFK---------TGKRIESSPVIGNTD--TIYFGSYDGHLYAINPD-GTEK 287 (330)
T ss_dssp ECTTSC-EEEEETTTEEEEECTT-SCEEEEEE---------CSSCCCSCCEECTTS--CEEEECTTCEEEEECTT-SCEE
T ss_pred ECCCCe-EEEEcCCCeEEEECCC-CCEeEEee---------CCCCccccceEcCCC--eEEEecCCCCEEEECCC-CcEE
Confidence 888875 6667778888888854 44433322 111222334555555 57888889899999953 2222
Q ss_pred EEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 737 FKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 737 ~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
.........+.++...++|+ |..++.+|.+++...+..
T Consensus 288 ~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 288 WNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp EEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred EEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 22222344455667777776 555888999999887654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-06 Score=99.92 Aligned_cols=190 Identities=13% Similarity=0.098 Sum_probs=129.1
Q ss_pred EEEecCCcEEEEEeCC------CcEEEEeCCCCcEEEEEecC----CceEEEEEccCCCCEEEEEE--------------
Q 002407 572 DLSWSKSQHLLSSSMD------KTVRLWHLSSKTCLKIFSHS----DYVTCIQFNPVDDRYFISGS-------------- 627 (927)
Q Consensus 572 ~l~~spd~~L~Sgs~D------gtV~lWDl~t~~~~~~~~h~----~~V~~v~fsp~dg~~L~sgs-------------- 627 (927)
.+...|++.++++..+ +.|.++|..+.+.+..+... ..-..+.|+| +++.+++..
T Consensus 142 ~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~ 220 (462)
T 2ece_A 142 TVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLE 220 (462)
T ss_dssp EEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTT
T ss_pred ceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchh
Confidence 4556677765555544 78999999999999988622 2345688899 888888875
Q ss_pred -----CCCcEEEEeCCCCcEEEeccCC---CcEEEEEE--CCCCCEEEEEEC------CCeEEEEECCCCeeeeeccccc
Q 002407 628 -----LDAKVRIWSIPERQVVDWNDLH---EMVTAACY--TPDGQGALVGSY------KGSCHLYNTSENKLQQKSPINL 691 (927)
Q Consensus 628 -----~Dg~I~IWDl~t~~~v~~~~~~---~~V~sla~--spdg~~l~tgs~------Dg~I~IwDl~~~~~~~~~~i~~ 691 (927)
...+|.+||+.+++++..+... .....+.| +|+++++.+++. +++|.+|....+.......+.+
T Consensus 221 ~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi 300 (462)
T 2ece_A 221 HLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEI 300 (462)
T ss_dssp THHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEE
T ss_pred hhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeC
Confidence 3688999999999888766654 34556656 999999888874 5688887766655433332222
Q ss_pred ccccccC-----------CCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-----cceEEEEeecC------------C
Q 002407 692 QNKKKRS-----------HQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-----DLVHKFKGFRN------------T 743 (927)
Q Consensus 692 ~~~~~~~-----------h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-----~~~~~~~~~~~------------~ 743 (927)
....... .......|.++++++.++++.-..+.|.+||.. +++..+..... .
T Consensus 301 ~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ 380 (462)
T 2ece_A 301 PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLT 380 (462)
T ss_dssp CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCC
T ss_pred CCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCC
Confidence 2111000 134578899999999666666678999999953 22222222100 0
Q ss_pred cceEEEEEecCCCEEEEEE
Q 002407 744 NSQISASLTANGRYVVSAS 762 (927)
Q Consensus 744 ~~v~sv~fspdg~~Lasgs 762 (927)
..-..+.++|||++|+++.
T Consensus 381 ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 381 GAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCCCCEEECTTSSEEEEEC
T ss_pred CCCCEEEEcCCCCEEEEEc
Confidence 1246789999999999987
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.83 E-value=9.9e-07 Score=99.23 Aligned_cols=198 Identities=7% Similarity=0.053 Sum_probs=127.3
Q ss_pred EEecCC-cEEEEEe----------CCCcEEEEeCCCCcEEEEEecC--------CceEEEEEccCCCCEEEEEEC--CCc
Q 002407 573 LSWSKS-QHLLSSS----------MDKTVRLWHLSSKTCLKIFSHS--------DYVTCIQFNPVDDRYFISGSL--DAK 631 (927)
Q Consensus 573 l~~spd-~~L~Sgs----------~DgtV~lWDl~t~~~~~~~~h~--------~~V~~v~fsp~dg~~L~sgs~--Dg~ 631 (927)
++++|+ .+|+.+. .++.|.+||..+.+.+..+.-. .....++|+| ++++|+++.. ++.
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCe
Confidence 778887 4455443 3678999999999998887522 2566799999 9999888864 688
Q ss_pred EEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC-CeeeeecccccccccccCCCCCeE-EEEEc
Q 002407 632 VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKIT-GFQFA 709 (927)
Q Consensus 632 I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vt-sl~fs 709 (927)
|.++|+.+++++..+..... ...+....+.+++.+.||.+.+.++.. ++...... ..+......+. ...|.
T Consensus 162 VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-----~~~~~~~~~~~~~~~~~ 234 (386)
T 3sjl_D 162 VGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-----EVFHPEDEFLINHPAYS 234 (386)
T ss_dssp EEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-----CCCSCTTSCBCSCCEEE
T ss_pred EEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec-----ceeccccccccccceeE
Confidence 99999999999887765542 223333456777888899999999876 55432111 00011111221 23554
Q ss_pred -CCCCcEEEEEECCCcEEEEECCcc----eEEEEeec--------CCcceEEEEEecCCCEEEEEEC----------CCc
Q 002407 710 -PGSSSEVLVTSADSRIRVVDGIDL----VHKFKGFR--------NTNSQISASLTANGRYVVSASE----------DSY 766 (927)
Q Consensus 710 -pdg~~~Llsgs~Dg~I~VwD~~~~----~~~~~~~~--------~~~~v~sv~fspdg~~Lasgs~----------Dg~ 766 (927)
+++ .++..+.++.|+++|.... ...+.... .......++++++++.|+.... ...
T Consensus 235 ~~dG--~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~ 312 (386)
T 3sjl_D 235 QKAG--RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF 312 (386)
T ss_dssp TTTT--EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEE
T ss_pred cCCC--cEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCE
Confidence 555 3445667899999996432 22222000 0111224677999998887653 256
Q ss_pred EEEEECCCCCCccc
Q 002407 767 VYVWKYEAESRPSR 780 (927)
Q Consensus 767 I~IWdl~s~~~~~~ 780 (927)
|.+.|+.+.+...+
T Consensus 313 V~viD~~t~kv~~~ 326 (386)
T 3sjl_D 313 VVVLDAKTGERLAK 326 (386)
T ss_dssp EEEEETTTCCEEEE
T ss_pred EEEEECCCCeEEEE
Confidence 99999988765443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-06 Score=96.87 Aligned_cols=267 Identities=9% Similarity=0.011 Sum_probs=163.2
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEee--cC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecc
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ--AH--NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~--gH--~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~ 497 (927)
..++.+..++.|..|+..+++..-.+....-. .+ ...+.+.- ..++..|+.++.++.|..+|..+++........
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 34566677778888888777654332211000 00 22232221 224557888889999999999888755432100
Q ss_pred cccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC
Q 002407 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (927)
Q Consensus 498 ~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp 577 (927)
. . ....++ . .
T Consensus 133 ~-----------------------------------------------------------~------~~~~p~----~-~ 142 (376)
T 3q7m_A 133 G-----------------------------------------------------------E------ALSRPV----V-S 142 (376)
T ss_dssp S-----------------------------------------------------------C------CCSCCE----E-E
T ss_pred C-----------------------------------------------------------c------eEcCCE----E-E
Confidence 0 0 000111 0 1
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceE------EEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCc
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVT------CIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM 651 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~------~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~ 651 (927)
++.++.++.++.|..+|..+++.+..+.....+. .... .+..++.+..++.|..+|..+++.+-.......
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~ 219 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQA 219 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccC
Confidence 4678888899999999999999888776443332 2222 245677888899999999999987654332211
Q ss_pred E-----E---EEEECC--CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 652 V-----T---AACYTP--DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 652 V-----~---sla~sp--dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
. . .+...| .+..+++++.++.+..+|..+++....... .....+... +. .|++++.
T Consensus 220 ~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-----------~~~~~~~~~--~~-~l~~~~~ 285 (376)
T 3q7m_A 220 TGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-----------GSVNDFIVD--GN-RIYLVDQ 285 (376)
T ss_dssp ----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC-----------CCEEEEEEE--TT-EEEEEET
T ss_pred CCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC-----------CCCCCceEE--CC-EEEEEcC
Confidence 0 0 011111 356788888899999999999987755321 223444443 23 6888889
Q ss_pred CCcEEEEECCcceEEEEeec-CCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 722 DSRIRVVDGIDLVHKFKGFR-NTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 722 Dg~I~VwD~~~~~~~~~~~~-~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
++.|..+|..+....+.... .........+ .+..|+.++.+|.|++||..+++..
T Consensus 286 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 286 NDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp TCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence 99999999765555444331 1112222222 2567888899999999999987654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=0.00013 Score=90.15 Aligned_cols=320 Identities=10% Similarity=0.137 Sum_probs=192.5
Q ss_pred eeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCccccee
Q 002407 415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494 (927)
Q Consensus 415 sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l 494 (927)
+...|....+|.|...+ +..|+..+..+...... . ......|++|...++|.+.+.. . +.|.+|+..+++.....
T Consensus 92 ~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~-~-~~~~~~i~~i~~d~~g~lwi~t-~-~gl~~~~~~~~~~~~~~ 166 (795)
T 4a2l_A 92 IVKTDSQGRVWIGTRDG-LSRYDEEKDIFQNFFYE-K-NGKHLQVNGIEEISPEQLLIST-P-EGLIMFDIKESKFIDDS 166 (795)
T ss_dssp EEEECTTSCEEEEESSC-EEEEETTTTEEEEECCE-E-TTEECCCCEEEEEETTEEEEEE-T-TEEEEEETTTTEEECSS
T ss_pred EEEECCCCCEEEEeCCc-hheeCCCCCeEEecccc-c-cCCCceEEEEEECCCCCEEEEE-C-CceEEEECCCCEEEecc
Confidence 33456666788888765 68888776655432210 0 0001128999999888765544 3 45888987654322110
Q ss_pred ecccccCcccc-EEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEE--ccCCCCEE
Q 002407 495 LEKQEDGHLNM-LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF--QGHLDDVL 571 (927)
Q Consensus 495 ~~~~~~~~~~~-v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l--~gH~~~V~ 571 (927)
....... +..+...+++.+.+.....+.... +...+....+ ..+...|.
T Consensus 167 ----~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~------------------------~~~~~~~~~~~~~~~~~~i~ 218 (795)
T 4a2l_A 167 ----FSTAMHKTIASTLYRQGDQIYIGTSTDGLYTY------------------------SITQKTFEKVIPILGTKQIQ 218 (795)
T ss_dssp ----SCHHHHTCCEEEEEEETTEEEEEESSSCEEEE------------------------ETTTCCEEECC----CCCEE
T ss_pred ----CCCCCCcceEEEEECCCCCEEEEECCCCEEEE------------------------eCCCCeEEEecCCCCCCeeE
Confidence 0000112 444444455555543322222111 1111111111 11345688
Q ss_pred EEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe--------cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE
Q 002407 572 DLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (927)
Q Consensus 572 ~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~--------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v 643 (927)
+|...+++.|..++.++-|.+||..+++...... ....|.++...+ ++.+. .|+.+ -|.+||..+++..
T Consensus 219 ~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lW-igt~~-Gl~~~~~~~~~~~ 295 (795)
T 4a2l_A 219 AILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNRLW-IGTFN-DLNIYHEGTDSFA 295 (795)
T ss_dssp EEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSCEE-EEESS-CEEEEETTTTEEE
T ss_pred EEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC-CCCEE-EEeCC-hhheEcCCCCeEE
Confidence 8888778888888876669999988876544321 135699999887 66644 45555 5899998887765
Q ss_pred EeccC--------CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 644 DWNDL--------HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 644 ~~~~~--------~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
..... ...|.++...++|. |.+|+.++-|.+|+..+........... ...-....|.++...+++.
T Consensus 296 ~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~---~~~l~~~~V~~i~~d~~g~-- 369 (795)
T 4a2l_A 296 SYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPY---KNSLSDNVVSCIVEDKDKN-- 369 (795)
T ss_dssp EECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTT---SSSCSCSSEEEEEECTTSC--
T ss_pred EEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCC---CCCCCCCeeEEEEECCCCC--
Confidence 54321 25799999999886 6678887889999876554322111000 0112345699999888774
Q ss_pred EEEEECCCcEEEEECCcc-eEEEEee-------cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 716 VLVTSADSRIRVVDGIDL-VHKFKGF-------RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~~-~~~~~~~-------~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
|.+|+.++-|..||.... ...+... .....|.+++..++|++|..|+.++-|.+|+..++.
T Consensus 370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence 778888888999996532 2223211 123568888888899856677777779999987653
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.74 E-value=3e-07 Score=105.13 Aligned_cols=173 Identities=12% Similarity=0.075 Sum_probs=122.4
Q ss_pred CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEE----------CCCcEEEEeCCCCcEEEeccCC--------
Q 002407 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS----------LDAKVRIWSIPERQVVDWNDLH-------- 649 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs----------~Dg~I~IWDl~t~~~v~~~~~~-------- 649 (927)
+.|.++|..+++.+..+.-...- .++++| ++++|+++. .++.|.++|..+.+++..+...
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence 69999999999999999844444 899999 888887775 3678999999999888755432
Q ss_pred CcEEEEEECCCCCEEEEEEC--CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 650 EMVTAACYTPDGQGALVGSY--KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~--Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
.....+.|+|||++++++.. ++.|.++|+.+++.+..+.+. . +....|++...+++.+.||.+.+
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~--------g-----~~~~~p~g~~~~v~~~~dG~~~~ 243 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP--------D-----CYHIFPASPTVFYMNCRDGSLAR 243 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--------S-----EEEEEEEETTEEEEEETTSSEEE
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC--------C-----ceeeccCCCcEEEEEcCCCCEEE
Confidence 24567899999999999874 578999999999988775431 1 12344555456677777777777
Q ss_pred EECCcc--eEEEE-ee-cCCcce-EEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 728 VDGIDL--VHKFK-GF-RNTNSQ-ISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 728 wD~~~~--~~~~~-~~-~~~~~v-~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
.+.... ..... .. ....++ ..+.|.+++..++..+..+.|++.|+...
T Consensus 244 V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~ 296 (426)
T 3c75_H 244 VDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE 296 (426)
T ss_dssp EECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred EECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence 775221 11100 00 011111 23567899888887788899999998653
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-07 Score=104.92 Aligned_cols=268 Identities=10% Similarity=-0.040 Sum_probs=157.4
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEecCcCcccceeecccccC
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG----------EDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs----------~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
+|.++|..+.+....+ ..-..+ .+.|+|||++|+.+. .++.|.+||+.+.+...++.....
T Consensus 47 ~vsvID~~t~~v~~~i-----~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~-- 117 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHS-----LGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA-- 117 (368)
T ss_dssp EEEEEETTTTEEEEEE-----EECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS--
T ss_pred eEEEEECCCCeEEEEE-----eCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc--
Confidence 7888887766654433 333345 799999999888886 378999999998876665421000
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~ 580 (927)
..+ ..+ .....++++|| ++
T Consensus 118 -------------~~~---------------------------------------------~~g--~~P~~ia~SpDGk~ 137 (368)
T 1mda_H 118 -------------PRF---------------------------------------------SVG--PRVHIIGNCASSAC 137 (368)
T ss_dssp -------------CSC---------------------------------------------CBS--CCTTSEEECTTSSC
T ss_pred -------------ccc---------------------------------------------ccC--CCcceEEEcCCCCE
Confidence 000 000 11234788998 56
Q ss_pred EEEEeC--CCcEEE--EeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-----CcEEEe----cc
Q 002407 581 LLSSSM--DKTVRL--WHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-----RQVVDW----ND 647 (927)
Q Consensus 581 L~Sgs~--DgtV~l--WDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-----~~~v~~----~~ 647 (927)
|+++.. ...|.+ +|+.+ +..+..... +.+.|.....+++.+.|+.+.+.++.+ ++.+.. ..
T Consensus 138 lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~ 211 (368)
T 1mda_H 138 LLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN 211 (368)
T ss_dssp EEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC
T ss_pred EEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeee
Confidence 777764 467888 99887 455542222 223442445666777899988889886 443211 11
Q ss_pred C-CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCe--eeeeccccccccc-ccCCCCCeEEEEEcCCCCcEEEEEE---
Q 002407 648 L-HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENK--LQQKSPINLQNKK-KRSHQRKITGFQFAPGSSSEVLVTS--- 720 (927)
Q Consensus 648 ~-~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~--~~~~~~i~~~~~~-~~~h~~~Vtsl~fspdg~~~Llsgs--- 720 (927)
. ..+. . .+++..++..+. +.+.+.|+.... ....+.+...... ..........++|+|++..++++..
T Consensus 212 vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~ 286 (368)
T 1mda_H 212 CSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS 286 (368)
T ss_dssp BCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECS
T ss_pred CCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecccc
Confidence 1 1232 3 566666666666 999999997543 2222211000000 0000111112679999885554444
Q ss_pred C-----CCcEEEEECCcceEEEEeecCCcceEEEEEecCCC-EEEEEE-CCCcEEEEECCCCCCccc
Q 002407 721 A-----DSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGR-YVVSAS-EDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 721 ~-----Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~-~Lasgs-~Dg~I~IWdl~s~~~~~~ 780 (927)
. ++.+.++|..+....-.... ......++|+|||+ ++++.. .++.|.++|+.+.+....
T Consensus 287 ~~~~~~~~~~~ViD~~t~~vv~~i~v-g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~ 352 (368)
T 1mda_H 287 RSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352 (368)
T ss_dssp SCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred CcccccCCCEEEEECCCCeEEEEEEC-CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEE
Confidence 2 23566999755433222211 12467899999998 456666 599999999998765443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.3e-06 Score=91.59 Aligned_cols=198 Identities=12% Similarity=0.099 Sum_probs=130.7
Q ss_pred CceEEEccCCCCEEEEEecCC-c-EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~-~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
..+..+..+......+.|+++ + .+++...++.|..|+. +++......+...+..+++++ +++++++...++.|.+|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRS 112 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEE
Confidence 445555566677889999998 4 4677777899999998 455433333667789999999 88876665556789999
Q ss_pred eCCCCcEEEeccC-----CCcEEEEEECCCCCEEEE----EEC-------------CCeEEEEECCCCeeeeeccccccc
Q 002407 636 SIPERQVVDWNDL-----HEMVTAACYTPDGQGALV----GSY-------------KGSCHLYNTSENKLQQKSPINLQN 693 (927)
Q Consensus 636 Dl~t~~~v~~~~~-----~~~V~sla~spdg~~l~t----gs~-------------Dg~I~IwDl~~~~~~~~~~i~~~~ 693 (927)
+.. ++....... ...+..+++.|+|.++++ |.. .+.|+.||..+++.....
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~------ 185 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA------ 185 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE------
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe------
Confidence 986 554433221 134678999999998776 332 256888887666544321
Q ss_pred ccccCCCCCeEEEEEcCCCCcEEEEEECC------CcEEEEECCcc-e---EEEEeecCCcceEEEEEecCCCEEEEEEC
Q 002407 694 KKKRSHQRKITGFQFAPGSSSEVLVTSAD------SRIRVVDGIDL-V---HKFKGFRNTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 694 ~~~~~h~~~Vtsl~fspdg~~~Llsgs~D------g~I~VwD~~~~-~---~~~~~~~~~~~v~sv~fspdg~~Lasgs~ 763 (927)
.......++|+|++. .|+++... +.|.+|+.... + ..+... .......++++++|++.++. .
T Consensus 186 -----~~~~p~gl~~spdg~-~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv~~-~ 257 (305)
T 3dr2_A 186 -----DLDHPNGLAFSPDEQ-TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWSSS-G 257 (305)
T ss_dssp -----EESSEEEEEECTTSS-EEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEECC-S
T ss_pred -----cCCCCcceEEcCCCC-EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEEec-C
Confidence 123467899999987 45555443 78999985321 1 111111 12334568899999955544 4
Q ss_pred CCcEEEEECC
Q 002407 764 DSYVYVWKYE 773 (927)
Q Consensus 764 Dg~I~IWdl~ 773 (927)
++ |++|+..
T Consensus 258 ~g-v~~~~~~ 266 (305)
T 3dr2_A 258 TG-VCVFDSD 266 (305)
T ss_dssp SE-EEEECTT
T ss_pred Cc-EEEECCC
Confidence 44 9999874
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=9.5e-07 Score=107.72 Aligned_cols=194 Identities=19% Similarity=0.156 Sum_probs=124.6
Q ss_pred CCCCEEEEEecCC-cEEEE-E----eCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC---------
Q 002407 566 HLDDVLDLSWSKS-QHLLS-S----SMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA--------- 630 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~S-g----s~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg--------- 630 (927)
|...+..++|+|| .+|+. . +...+|++||+.+++.+...........++|+ |++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL--GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE--TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe--CCCEEEEEEecCccccccccc
Confidence 5557888999999 45553 2 22357999999999876542222223577898 677788777774
Q ss_pred ----cEEEEeCCCCc----EEEecc--CCCcEEEEEECCCCCEEEEEEC----CCeEEEEECCCCee-eeeccccccccc
Q 002407 631 ----KVRIWSIPERQ----VVDWND--LHEMVTAACYTPDGQGALVGSY----KGSCHLYNTSENKL-QQKSPINLQNKK 695 (927)
Q Consensus 631 ----~I~IWDl~t~~----~v~~~~--~~~~V~sla~spdg~~l~tgs~----Dg~I~IwDl~~~~~-~~~~~i~~~~~~ 695 (927)
.|++|++.+.. ++.... +...+..+.|+|||++|+.... ...|+++|+.++.. ...+
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l-------- 276 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV-------- 276 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE--------
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE--------
Confidence 39999998754 232222 2345788999999999876543 24899999977631 1111
Q ss_pred ccCCCCCeEEEEEcCCCCcEEEEEECC---CcEEEEECCcce----EEEEeecCCcceEEEEEecCCCEEEEEEC-CC--
Q 002407 696 KRSHQRKITGFQFAPGSSSEVLVTSAD---SRIRVVDGIDLV----HKFKGFRNTNSQISASLTANGRYVVSASE-DS-- 765 (927)
Q Consensus 696 ~~~h~~~Vtsl~fspdg~~~Llsgs~D---g~I~VwD~~~~~----~~~~~~~~~~~v~sv~fspdg~~Lasgs~-Dg-- 765 (927)
..+....... +.+++..+++.+..+ +.|.++|..... ..+..+. ..+. .|++++++|+.... ++
T Consensus 277 -~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 277 -QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER--QQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp -ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC--SSCE--EEEEETTEEEEEEEETTEE
T ss_pred -eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC--CCEE--EEEEECCEEEEEEEECCee
Confidence 1333444444 666677566666544 678889864321 3444432 2333 88899988877665 43
Q ss_pred cEEEEECCCC
Q 002407 766 YVYVWKYEAE 775 (927)
Q Consensus 766 ~I~IWdl~s~ 775 (927)
.|++|++...
T Consensus 351 ~l~~~d~~g~ 360 (693)
T 3iuj_A 351 RVEQFDYEGK 360 (693)
T ss_dssp EEEEECTTSC
T ss_pred EEEEEECCCC
Confidence 6889988753
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.62 E-value=0.0003 Score=86.71 Aligned_cols=333 Identities=9% Similarity=0.054 Sum_probs=189.5
Q ss_pred cCCCCeEEEccCceEEEEeccCcccccceeeeeE--eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceee
Q 002407 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQE--IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495 (927)
Q Consensus 418 ~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~--L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~ 495 (927)
.+....+|.|....-|..|+...+++........ ..-....|.+|...++|.+.+. ... -|.+|+..+++...-..
T Consensus 170 ~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~ 247 (781)
T 3v9f_A 170 EAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHN 247 (781)
T ss_dssp EEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC---
T ss_pred ECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEc
Confidence 3445567878776457788876665433211000 0012357999999999876554 344 58889976654322111
Q ss_pred ccc--ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEE
Q 002407 496 EKQ--EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (927)
Q Consensus 496 ~~~--~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l 573 (927)
... .......|.++....++.+.+.....+............... ... ...+..... ...-....|.+|
T Consensus 248 ~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~----~~~-f~~~~~~~~----~~~l~~~~v~~i 318 (781)
T 3v9f_A 248 NPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPE----QIR-FEFIREGDN----NYSLSNASARYI 318 (781)
T ss_dssp --------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC--------------CEEECBCSS----TTSBSSSCEEEE
T ss_pred CCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeee----ccc-cccccCCCC----CCCCCCCeEEEE
Confidence 000 011234567777777777666553333322211111000000 000 000000000 001134578999
Q ss_pred EecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe----------cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE
Q 002407 574 SWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS----------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (927)
Q Consensus 574 ~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~----------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v 643 (927)
...+++.|..|+.++-|..++..+........ ....|.++...+ ++. |..|+.++-|.+|+..++...
T Consensus 319 ~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~ 396 (781)
T 3v9f_A 319 FQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-QGK-LWIGTDGGGINVFENGKRVAI 396 (781)
T ss_dssp EECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-TSC-EEEEEBSSCEEEEETTEEEEE
T ss_pred EEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-CCC-EEEEeCCCcEEEEECCCCeEE
Confidence 98888889999988889999988765433211 235689998876 565 556676677999998765443
Q ss_pred Eec----cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 644 DWN----DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 644 ~~~----~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
... .....|.+++..++|. |.+|+.++-|..|+..+++....... ......|.++...+++ .|.++
T Consensus 397 ~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~-------~~~~~~v~~i~~d~~g--~lwig 466 (781)
T 3v9f_A 397 YNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELE-------KNELLDVRVFYEDKNK--KIWIG 466 (781)
T ss_dssp CC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCST-------TTCCCCEEEEEECTTS--EEEEE
T ss_pred EccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccC-------CCCCCeEEEEEECCCC--CEEEE
Confidence 321 1235789999888876 55577777799999887765432110 1234678999888876 46667
Q ss_pred ECCCcEEEEECCcc-eEEEEeec----CCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 720 SADSRIRVVDGIDL-VHKFKGFR----NTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 720 s~Dg~I~VwD~~~~-~~~~~~~~----~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
+. +-|.+||.... ...+.... ....+.++...++|.+.+. +.++-|+.|+..+.
T Consensus 467 t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 467 TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQ 525 (781)
T ss_dssp ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCC
T ss_pred EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCC
Confidence 66 56888885432 22222111 1356888888888876654 44344888887653
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-05 Score=89.75 Aligned_cols=262 Identities=10% Similarity=0.034 Sum_probs=156.1
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..++.+..++.|..++..+++..-.+. +.+ .......+ .+..|+.++.++.|..+|..+++.+.......
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~---~~~--~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~--- 173 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQTK---VAG--EALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDM--- 173 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEE---CSS--CCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEEe---CCC--ceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCC---
Confidence 345667777888888887776543221 111 11111112 13477888889999999998887555431000
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL 581 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L 581 (927)
+...+.+...++.. ++.+
T Consensus 174 ---------------------------------------------------------~~~~~~~~~~~~~~-----~~~v 191 (376)
T 3q7m_A 174 ---------------------------------------------------------PSLSLRGESAPTTA-----FGAA 191 (376)
T ss_dssp --------------------------------------------------------------CCCCCCEEE-----TTEE
T ss_pred ---------------------------------------------------------CceeecCCCCcEEE-----CCEE
Confidence 00000111111111 4678
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEecCCce-----E---EEEEcc-CCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcE
Q 002407 582 LSSSMDKTVRLWHLSSKTCLKIFSHSDYV-----T---CIQFNP-VDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMV 652 (927)
Q Consensus 582 ~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V-----~---~v~fsp-~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V 652 (927)
+.+..++.|..+|..+++.+..+....+. . .+...| ..+..++.++.++.|..+|..+++.+...... ..
T Consensus 192 ~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-~~ 270 (376)
T 3q7m_A 192 VVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-SV 270 (376)
T ss_dssp EECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-CE
T ss_pred EEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-CC
Confidence 88888999999999999988777532110 0 010111 02456778888999999999999877544433 34
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc
Q 002407 653 TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID 732 (927)
Q Consensus 653 ~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~ 732 (927)
..+.. ++..+++++.++.|..+|..+++....... .....+...... +. .|++++.++.|+++|..+
T Consensus 271 ~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~--------~~~~~~~~~~~~--~~-~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 271 NDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD--------LLHRLLTSPVLY--NG-NLVVGDSEGYLHWINVED 337 (376)
T ss_dssp EEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECT--------TTTSCCCCCEEE--TT-EEEEECTTSEEEEEETTT
T ss_pred CCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecc--------cCCCcccCCEEE--CC-EEEEEeCCCeEEEEECCC
Confidence 44443 466888889999999999999987655321 111112222222 22 788899999999999655
Q ss_pred ceEEEEeecCCcceEE-EEEecCCCEEEEEECCCcEEEEE
Q 002407 733 LVHKFKGFRNTNSQIS-ASLTANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 733 ~~~~~~~~~~~~~v~s-v~fspdg~~Lasgs~Dg~I~IWd 771 (927)
.............+.. ... .+..|+.++.+|.|+.|+
T Consensus 338 G~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 338 GRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 4443333221222221 122 245788889999999987
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=4.3e-06 Score=101.67 Aligned_cols=177 Identities=7% Similarity=0.083 Sum_probs=117.5
Q ss_pred EEEecCC-cEEEEEeCCC-------------------cEEEEeCCCCcEEEEEe---cC-------CceEEEEEccCCC-
Q 002407 572 DLSWSKS-QHLLSSSMDK-------------------TVRLWHLSSKTCLKIFS---HS-------DYVTCIQFNPVDD- 620 (927)
Q Consensus 572 ~l~~spd-~~L~Sgs~Dg-------------------tV~lWDl~t~~~~~~~~---h~-------~~V~~v~fsp~dg- 620 (927)
.+++.++ +.|+.+..++ .|..+|..+++.+..+. |. .....+.... ++
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~ 325 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGK 325 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTE
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCc
Confidence 5677776 7787777654 59999999999998876 21 1222333333 56
Q ss_pred --CEEEEEECCCcEEEEeCCCCcEEEeccCC-----------C-cE------------------------EEEEECCCCC
Q 002407 621 --RYFISGSLDAKVRIWSIPERQVVDWNDLH-----------E-MV------------------------TAACYTPDGQ 662 (927)
Q Consensus 621 --~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~-----------~-~V------------------------~sla~spdg~ 662 (927)
..|+.++.+|.|+++|..+++++...... . .+ ..++|+|++.
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~ 405 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG 405 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence 68999999999999999999987533211 0 01 1468899988
Q ss_pred EEEEEECC-------------------------------------------CeEEEEECCCCeeeeecccccccccccCC
Q 002407 663 GALVGSYK-------------------------------------------GSCHLYNTSENKLQQKSPINLQNKKKRSH 699 (927)
Q Consensus 663 ~l~tgs~D-------------------------------------------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h 699 (927)
++++...+ |.|..||+.+++.+.....
T Consensus 406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---------- 475 (677)
T 1kb0_A 406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---------- 475 (677)
T ss_dssp EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE----------
T ss_pred EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC----------
Confidence 88886542 7899999999998766532
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecC-CcceEEEEEecCCCEEEE
Q 002407 700 QRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRN-TNSQISASLTANGRYVVS 760 (927)
Q Consensus 700 ~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~-~~~v~sv~fspdg~~Las 760 (927)
...+....+...+. ++++++.|+.+++||..+.......... .....-+.|..+|+.++.
T Consensus 476 ~~~~~~g~~~~~g~-~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 476 VSPWNGGTLTTAGN-VVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp SSSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCCcCcceEeCCC-EEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 12233334555555 7788899999999996554443333222 222234566788865443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.56 E-value=0.00077 Score=83.01 Aligned_cols=324 Identities=9% Similarity=0.009 Sum_probs=190.9
Q ss_pred eecCCCCeEEEccCceEEEEeccCcccccceeeeeE--eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccce
Q 002407 416 ATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQE--IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (927)
Q Consensus 416 a~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~--L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~ 493 (927)
...|....+|.|... -+.+|+...+.+........ .......|.+|...++|. |..|...+-|.+++..+......
T Consensus 216 i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~ 293 (781)
T 3v9f_A 216 IYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLP 293 (781)
T ss_dssp EEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-----
T ss_pred EEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeee
Confidence 334555567888776 58888877666544322110 011246799999998886 44455645688888876542211
Q ss_pred ee-------cc--cccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEc
Q 002407 494 LL-------EK--QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ 564 (927)
Q Consensus 494 l~-------~~--~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~ 564 (927)
.. .. ........|.++....++.+.+.....+...... .......+.
T Consensus 294 ~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~------------------------~~~~~~~~~ 349 (781)
T 3v9f_A 294 EQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISN------------------------APPTFHTWS 349 (781)
T ss_dssp ----CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECS------------------------SCCSCEEEC
T ss_pred eccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCC------------------------CCCcceeec
Confidence 10 00 0112234566666666766655443333221111 111111111
Q ss_pred ----------cCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEE---e-cCCceEEEEEccCCCCEEEEEECCC
Q 002407 565 ----------GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF---S-HSDYVTCIQFNPVDDRYFISGSLDA 630 (927)
Q Consensus 565 ----------gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~---~-h~~~V~~v~fsp~dg~~L~sgs~Dg 630 (927)
-....|.++...+++.|..|+.++-|.+|+..++...... . ....|.++...+ ++. |..|+.++
T Consensus 350 ~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~ 427 (781)
T 3v9f_A 350 YSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLG 427 (781)
T ss_dssp ----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTE
T ss_pred cCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccC
Confidence 1235689999888888999998888999998765432211 1 346789998876 665 45577777
Q ss_pred cEEEEeCCCCcEEEecc---CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE
Q 002407 631 KVRIWSIPERQVVDWND---LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 631 ~I~IWDl~t~~~v~~~~---~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
.|..++..+++...... ....|.++...++|. |.+|+. +-|.+||..+++........ ........|.++.
T Consensus 428 Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~----~~~~~~~~i~~i~ 501 (781)
T 3v9f_A 428 NISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTS----NSQLLENFVRSIA 501 (781)
T ss_dssp EEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTT----TSSCSCSCEEEEE
T ss_pred CEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCc----ccccccceeEEEE
Confidence 79999988877655432 246799999888875 556666 56889998876543322110 0011246799999
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCcc-eEEEEee--cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 708 FAPGSSSEVLVTSADSRIRVVDGIDL-VHKFKGF--RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 708 fspdg~~~Llsgs~Dg~I~VwD~~~~-~~~~~~~--~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
..+++. |.+++..+-|..||.... ...+... .....|.++...++|.+.++. .+|-|..|+..+..
T Consensus 502 ~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 502 QDSEGR--FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFD 570 (781)
T ss_dssp ECTTCC--EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCC
T ss_pred EcCCCC--EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCc
Confidence 888774 666776555778885432 2222211 123467888888888766554 46654888876543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-05 Score=84.94 Aligned_cols=201 Identities=5% Similarity=-0.026 Sum_probs=137.7
Q ss_pred CEEEEEEcCCCCEEEEEeC--CCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccc
Q 002407 458 SIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (927)
Q Consensus 458 ~I~~vafSpdG~~LaSgs~--DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~ 535 (927)
....|.|++|+.++++.+. ++.|++.|+.+++....+...
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~-------------------------------------- 63 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD-------------------------------------- 63 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC--------------------------------------
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC--------------------------------------
Confidence 3689999999866666554 679999999988765543100
Q ss_pred ccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecC-CceEEEE
Q 002407 536 INRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHS-DYVTCIQ 614 (927)
Q Consensus 536 ~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~-~~V~~v~ 614 (927)
.+ .....+++..+...++.-.++.|.++|..+.+.+..+... .. ...
T Consensus 64 -----------------------------~~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~g 111 (266)
T 2iwa_A 64 -----------------------------DS-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWG 111 (266)
T ss_dssp -----------------------------TT-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCE
T ss_pred -----------------------------CC-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEE
Confidence 00 0112344444344455556889999999999999988754 32 234
Q ss_pred EccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC------CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecc
Q 002407 615 FNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 615 fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~------~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~ 688 (927)
+++ +++.|+++..++.|.++|..+.+.+...... ..++.+.|. +|..++....++.|.+.|+.+++....+.
T Consensus 112 lt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~ 189 (266)
T 2iwa_A 112 LAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWIL 189 (266)
T ss_dssp EEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred EEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEE
Confidence 556 6666666667889999999998877654432 246788888 67555444467899999999999888776
Q ss_pred cccc-c---ccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 689 INLQ-N---KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 689 i~~~-~---~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
+... . ..........++++|+|+++.+++++.....|.+.+.
T Consensus 190 ~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 190 LPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp CHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred CCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 5311 0 0011223467999999999877888888899988874
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.6e-06 Score=99.67 Aligned_cols=180 Identities=9% Similarity=0.104 Sum_probs=116.4
Q ss_pred EEEecCC-cEEEEEeCCCc-------------------EEEEeCCCCcEEEEEe---cC-------CceEEEEEccCCCC
Q 002407 572 DLSWSKS-QHLLSSSMDKT-------------------VRLWHLSSKTCLKIFS---HS-------DYVTCIQFNPVDDR 621 (927)
Q Consensus 572 ~l~~spd-~~L~Sgs~Dgt-------------------V~lWDl~t~~~~~~~~---h~-------~~V~~v~fsp~dg~ 621 (927)
.+++.++ ++|+.+..++. |..||..+++.+..+. |. ..+....... +++
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCc
Confidence 5677776 88888887764 9999999999998876 21 1122222222 454
Q ss_pred ---EEEEEECCCcEEEEeCCCCcEEEeccCCC----------------------------------------cEEEEEEC
Q 002407 622 ---YFISGSLDAKVRIWSIPERQVVDWNDLHE----------------------------------------MVTAACYT 658 (927)
Q Consensus 622 ---~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~----------------------------------------~V~sla~s 658 (927)
.|+.++.+|.|+++|..+++++....... ....++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78899999999999999999873211110 01126888
Q ss_pred CCCCEEEEEEC---------------------------------------------CCeEEEEECCCCeeeeeccccccc
Q 002407 659 PDGQGALVGSY---------------------------------------------KGSCHLYNTSENKLQQKSPINLQN 693 (927)
Q Consensus 659 pdg~~l~tgs~---------------------------------------------Dg~I~IwDl~~~~~~~~~~i~~~~ 693 (927)
|+..++++... +|.|+.||+.+++........
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--- 474 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--- 474 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES---
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC---
Confidence 98888887632 377999999999987765421
Q ss_pred ccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecC-CcceEEEEEecCCC-EEEEEEC
Q 002407 694 KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRN-TNSQISASLTANGR-YVVSASE 763 (927)
Q Consensus 694 ~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~-~~~v~sv~fspdg~-~Lasgs~ 763 (927)
..+..-.+...+. ++++++.|+.|++||..+.....+.... .....-+.|..+|+ |+++.+.
T Consensus 475 -------~~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 475 -------TIFNGGTLSTAGN-LVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp -------SSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred -------CCccCccceECCC-EEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 1122223444444 7888999999999996655444433322 11123366778886 4444433
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=5.5e-06 Score=100.67 Aligned_cols=200 Identities=10% Similarity=0.054 Sum_probs=132.0
Q ss_pred CcEEEEEeC------CCcEEEEeCCCCcEEEEEecCCc---------------------------------eEEEEEccC
Q 002407 578 SQHLLSSSM------DKTVRLWHLSSKTCLKIFSHSDY---------------------------------VTCIQFNPV 618 (927)
Q Consensus 578 d~~L~Sgs~------DgtV~lWDl~t~~~~~~~~h~~~---------------------------------V~~v~fsp~ 618 (927)
++.++.++. ++.|+.||..+++.+..+..... ...++++|
T Consensus 174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~- 252 (677)
T 1kb0_A 174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA- 252 (677)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-
T ss_pred CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-
Confidence 356666553 79999999999999987762111 13578888
Q ss_pred CCCEEEEEECCC-------------------cEEEEeCCCCcEEEeccC--C--------CcEEEEEECCCC---CEEEE
Q 002407 619 DDRYFISGSLDA-------------------KVRIWSIPERQVVDWNDL--H--------EMVTAACYTPDG---QGALV 666 (927)
Q Consensus 619 dg~~L~sgs~Dg-------------------~I~IWDl~t~~~v~~~~~--~--------~~V~sla~spdg---~~l~t 666 (927)
++.+|+.+..++ .|..+|..+++.+-.+.. + .....+....+| ..+++
T Consensus 253 ~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~ 332 (677)
T 1kb0_A 253 ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILH 332 (677)
T ss_dssp TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEE
Confidence 777888877664 499999999998754322 1 123333444577 68999
Q ss_pred EECCCeEEEEECCCCeeeeecccccccc--cccCCCC------------------------CeEEEEEcCCCCcEEEEEE
Q 002407 667 GSYKGSCHLYNTSENKLQQKSPINLQNK--KKRSHQR------------------------KITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 667 gs~Dg~I~IwDl~~~~~~~~~~i~~~~~--~~~~h~~------------------------~Vtsl~fspdg~~~Llsgs 720 (927)
++.+|.|+++|..+++++....+....- ....... .-..++|+|+.. ++++..
T Consensus 333 ~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~-~~yv~~ 411 (677)
T 1kb0_A 333 APKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG-LVYLPA 411 (677)
T ss_dssp CCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT-EEEEEE
T ss_pred ECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC-EEEEeC
Confidence 9999999999999999876654221000 0000000 012567888776 555543
Q ss_pred C-------------------------------------------CCcEEEEECCcceEEEEeecCCcceEEEEEecCCCE
Q 002407 721 A-------------------------------------------DSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRY 757 (927)
Q Consensus 721 ~-------------------------------------------Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~ 757 (927)
. .+.|..||..+.....+... ..++....+..++.+
T Consensus 412 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~ 490 (677)
T 1kb0_A 412 QNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNV 490 (677)
T ss_dssp EECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTE
T ss_pred hhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCE
Confidence 2 27799999766555554432 233444556677888
Q ss_pred EEEEECCCcEEEEECCCCCCccc
Q 002407 758 VVSASEDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 758 Lasgs~Dg~I~IWdl~s~~~~~~ 780 (927)
++.++.||.+++||.++++....
T Consensus 491 v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 491 VFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp EEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEECCCCcEEEEECCCCceeee
Confidence 99999999999999999876543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.3e-06 Score=91.71 Aligned_cols=173 Identities=16% Similarity=0.079 Sum_probs=115.9
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC-CCcEEEE
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-HEMVTAA 655 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~-~~~V~sl 655 (927)
++.|+.++.++.|..+|.. ++....+. ....+.++...+ ++. |+.++.++.|..||.. ++.+..... ...+.++
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 182 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA 182 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence 6788899999999999998 77766655 444566677765 555 6667788999999998 766543332 3456677
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ce
Q 002407 656 CYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-LV 734 (927)
Q Consensus 656 a~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~ 734 (927)
.+.+++..+ +++ +.|..|| .+++...... .....+.++...+++ .|.+++.++.|..+|... ..
T Consensus 183 ~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~---------~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~~g~~~ 247 (330)
T 3hxj_A 183 SIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFY---------AGYWTVTRPAISEDG--TIYVTSLDGHLYAINPDGTEK 247 (330)
T ss_dssp EECTTCCEE-EES--SSEEEEC-TTSCEEEEEC---------CSSCCCSCCEECTTS--CEEEEETTTEEEEECTTSCEE
T ss_pred EEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEc---------cCCcceeceEECCCC--eEEEEcCCCeEEEECCCCCEe
Confidence 777777744 444 8899999 6665544432 223457777888876 477788888899998432 22
Q ss_pred EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 735 HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 735 ~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
..+.. ....+..+.+.+++ .|..++.+|.|+.+|.
T Consensus 248 ~~~~~--~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 248 WRFKT--GKRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp EEEEC--SSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred EEeeC--CCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 22222 22223345555555 5666778888999985
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.5e-06 Score=99.25 Aligned_cols=200 Identities=11% Similarity=0.109 Sum_probs=129.3
Q ss_pred CcEEEEEe------CCCcEEEEeCCCCcEEEEEecC--C------------------------------ceEEEEEccCC
Q 002407 578 SQHLLSSS------MDKTVRLWHLSSKTCLKIFSHS--D------------------------------YVTCIQFNPVD 619 (927)
Q Consensus 578 d~~L~Sgs------~DgtV~lWDl~t~~~~~~~~h~--~------------------------------~V~~v~fsp~d 619 (927)
++.++.++ .++.|+.||..+++.+..+... . ....+++.| +
T Consensus 167 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~ 245 (689)
T 1yiq_A 167 NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-E 245 (689)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-T
T ss_pred CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-C
Confidence 45666554 3789999999999998877521 0 012578888 7
Q ss_pred CCEEEEEECCCc-------------------EEEEeCCCCcEEEeccC--C--------CcEEEEEECCCCC---EEEEE
Q 002407 620 DRYFISGSLDAK-------------------VRIWSIPERQVVDWNDL--H--------EMVTAACYTPDGQ---GALVG 667 (927)
Q Consensus 620 g~~L~sgs~Dg~-------------------I~IWDl~t~~~v~~~~~--~--------~~V~sla~spdg~---~l~tg 667 (927)
..+|+.+..++. |..||..+++.+-.+.. + ..+....+..+|+ .++.+
T Consensus 246 ~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~ 325 (689)
T 1yiq_A 246 LNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQA 325 (689)
T ss_dssp TTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEE
Confidence 788888887763 99999999998753322 1 1222223333665 78899
Q ss_pred ECCCeEEEEECCCCeeeeeccccccc---c--------------c--ccCCC-----------CCeEEEEEcCCCCcEEE
Q 002407 668 SYKGSCHLYNTSENKLQQKSPINLQN---K--------------K--KRSHQ-----------RKITGFQFAPGSSSEVL 717 (927)
Q Consensus 668 s~Dg~I~IwDl~~~~~~~~~~i~~~~---~--------------~--~~~h~-----------~~Vtsl~fspdg~~~Ll 717 (927)
+.+|.++++|..+++++....+.... . . ..... ..-..++|+|+.. +++
T Consensus 326 ~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~-~~y 404 (689)
T 1yiq_A 326 PKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTG-LVY 404 (689)
T ss_dssp CTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTT-EEE
T ss_pred CCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCC-EEE
Confidence 99999999999999987443221100 0 0 00000 0112367888766 455
Q ss_pred EEEC---------------------------------------------CCcEEEEECCcceEEEEeecCCcceEEEEEe
Q 002407 718 VTSA---------------------------------------------DSRIRVVDGIDLVHKFKGFRNTNSQISASLT 752 (927)
Q Consensus 718 sgs~---------------------------------------------Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fs 752 (927)
+... ++.|+.||..+....++...+ .......+.
T Consensus 405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~ 483 (689)
T 1yiq_A 405 IPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TIFNGGTLS 483 (689)
T ss_dssp EEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SSCCCCEEE
T ss_pred EeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CCccCccce
Confidence 4421 377999997665555544322 223333566
Q ss_pred cCCCEEEEEECCCcEEEEECCCCCCccc
Q 002407 753 ANGRYVVSASEDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 753 pdg~~Lasgs~Dg~I~IWdl~s~~~~~~ 780 (927)
..+.+|+.++.||.|+.||.++++.+-+
T Consensus 484 tagglvf~gt~dg~l~a~D~~tG~~lw~ 511 (689)
T 1yiq_A 484 TAGNLVFEGSADGRVIAYAADTGEKLWE 511 (689)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ECCCEEEEECCCCcEEEEECCCCcccee
Confidence 6788999999999999999999886643
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.48 E-value=2.4e-05 Score=82.72 Aligned_cols=196 Identities=10% Similarity=0.031 Sum_probs=128.9
Q ss_pred eEeecCCCC--EEEEEEcCCCCEEEEEeCCC--cEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCC
Q 002407 450 QEIQAHNGS--IWSIKFSLDGRYLASAGEDC--VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (927)
Q Consensus 450 q~L~gH~~~--I~~vafSpdG~~LaSgs~Dg--tVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~ 525 (927)
+++ .|... ...|.|+ ++.++.+.+.+| .|+++|+.+++.+.++....
T Consensus 35 ~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~--------------------------- 85 (262)
T 3nol_A 35 HSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK--------------------------- 85 (262)
T ss_dssp EEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT---------------------------
T ss_pred EEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC---------------------------
Confidence 444 35433 4889999 777778888876 89999999887655531000
Q ss_pred ceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe
Q 002407 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (927)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~ 605 (927)
.---..++...+...+..-.++.+.+||..+.+.+..+.
T Consensus 86 -----------------------------------------~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~ 124 (262)
T 3nol_A 86 -----------------------------------------RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN 124 (262)
T ss_dssp -----------------------------------------TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred -----------------------------------------ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence 000111223233333444468899999999999999998
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC------CcEEEEEECCCCCEEEEEECCCeEEEEECC
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH------EMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~------~~V~sla~spdg~~l~tgs~Dg~I~IwDl~ 679 (927)
....-..++ + ++..|+....++.|.++|..+.+++...... ..++.+.|. +|+.++..-.++.|.+.|..
T Consensus 125 ~~~eG~glt--~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~ 200 (262)
T 3nol_A 125 YDGEGWGLT--H-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPE 200 (262)
T ss_dssp CSSCCCCEE--E-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTT
T ss_pred CCCCceEEe--c-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECC
Confidence 655434444 4 5666666666788999999998877654332 345667776 67655545468899999999
Q ss_pred CCeeeeeccccccccc---ccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 680 ENKLQQKSPINLQNKK---KRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 680 ~~~~~~~~~i~~~~~~---~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
+++....+.+.-.... ........++|+|+|+.+.++++|
T Consensus 201 tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 201 TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 9999888765311111 112234679999999888555555
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.9e-08 Score=109.77 Aligned_cols=161 Identities=11% Similarity=0.038 Sum_probs=82.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecC--CceE-EEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHS--DYVT-CIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAA 655 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~--~~V~-~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sl 655 (927)
..+++++.|+.|+.||..+++.+..+... ..+. ...+. .+..|++++.++.|+.||..+++.+....... ..
T Consensus 50 ~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~ 124 (369)
T 2hz6_A 50 PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---AD 124 (369)
T ss_dssp CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC-----------------
T ss_pred CEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cc
Confidence 35666789999999999998876665421 1111 01111 34567888889999999999998876554433 23
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC--CcEEEEEECCCcEEEEECCcc
Q 002407 656 CYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS--SSEVLVTSADSRIRVVDGIDL 733 (927)
Q Consensus 656 a~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg--~~~Llsgs~Dg~I~VwD~~~~ 733 (927)
.++|++..+++++.++.|+.||..+++....+... . .....+.++. ...+++++.++.|+.||..+.
T Consensus 125 ~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-------~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 125 SLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF-------D----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp --------EEEEEEEEEEECCCSSSSSCCCEEEEE-------E----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred cccccCCEEEEEecCCEEEEEECCCCCEEEeEecc-------c----ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 45678889999999999999999998866554321 0 1112223321 025778899999999997655
Q ss_pred eEEEEeecCCcceE-EEEEecCCC
Q 002407 734 VHKFKGFRNTNSQI-SASLTANGR 756 (927)
Q Consensus 734 ~~~~~~~~~~~~v~-sv~fspdg~ 756 (927)
...+... ...++. ...++++|.
T Consensus 194 ~~~W~~~-~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 194 DVLWIQN-YASPVVAFYVWQREGL 216 (369)
T ss_dssp CEEEEEE-CSSCEEEEEECTTSSC
T ss_pred cEEEEec-CCCceEEEEEecCCce
Confidence 4444433 233443 344555664
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00018 Score=76.05 Aligned_cols=197 Identities=9% Similarity=0.022 Sum_probs=125.4
Q ss_pred CEEEEEecCC-cEEEEE-eCCCcEEEEeCCCCcEEEEEec-CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe
Q 002407 569 DVLDLSWSKS-QHLLSS-SMDKTVRLWHLSSKTCLKIFSH-SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645 (927)
Q Consensus 569 ~V~~l~~spd-~~L~Sg-s~DgtV~lWDl~t~~~~~~~~h-~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~ 645 (927)
.+..++|+++ +.|+.+ ...+.|..+++........+.. -.....|+++|..+.++++-...+.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 4678999985 665544 4578999999987665444432 257889999983344445555567899999876443333
Q ss_pred ccC-CCcEEEEEECCCCCEEEEEEC---CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 646 NDL-HEMVTAACYTPDGQGALVGSY---KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 646 ~~~-~~~V~sla~spdg~~l~tgs~---Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
... ......++++|++..|.++.. .+.|..+++......... .........+++++++..++++-..
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~---------~~~~~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA---------QDNLGLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE---------CTTCSCEEEEEEETTTTEEEEEETT
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEE---------ECCCCCCcEEEEcCCCCEEEEEECC
Confidence 322 256889999997666666554 368888888653321111 1223467899999987756666677
Q ss_pred CCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCCCC
Q 002407 722 DSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAESR 777 (927)
Q Consensus 722 Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~~~ 777 (927)
.+.|.++|........... .......+++. +..|+.+. ..+.|.+++..+++.
T Consensus 188 ~~~I~~~~~~g~~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE 241 (267)
T ss_dssp TTEEEEEETTEEEEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE
T ss_pred CCEEEEEecCCCceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCc
Confidence 7899999965422211111 22334566654 44554444 567899999877543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.6e-08 Score=110.87 Aligned_cols=179 Identities=12% Similarity=0.081 Sum_probs=101.5
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC--CcEE-E
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH--EMVT-A 654 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~--~~V~-s 654 (927)
++.|++++.|+.|+.||..+++.+..+.. ..+.+..+.. ++..+++++.|+.|+.||..+++.+.....+ ..+. +
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 47899999999999999999999988876 5666655666 6777888889999999999888765433222 1110 0
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc-
Q 002407 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL- 733 (927)
Q Consensus 655 la~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~- 733 (927)
.++. ++..+++++.++.|+.||..+++....+.. +. ...++|++. .+++++.++.|+.||..+.
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---------~~----~~~~~p~~~-~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS---------AF----ADSLSPSTS-LLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC------------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC---------CC----cccccccCC-EEEEEecCCEEEEEECCCCC
Confidence 1111 345678888899999999999988765431 11 133456554 7888899999999996432
Q ss_pred -eEEEEeecCCcceEEEEEecCC---CEEEEEECCCcEEEEECCCCCC
Q 002407 734 -VHKFKGFRNTNSQISASLTANG---RYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 734 -~~~~~~~~~~~~v~sv~fspdg---~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
...+.... ....++..+. ..+++++.||.|+.||..+++.
T Consensus 152 ~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 152 LRWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp CCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred EEEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 22222211 1122333332 4677788999999999988764
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=5.5e-05 Score=80.68 Aligned_cols=206 Identities=11% Similarity=0.047 Sum_probs=138.0
Q ss_pred ceEEEccCCC--CEEEEEecCCcEEEEEeC---CCcEEEEeCCCCcEEEEEecCC--ceEEEEEccCCCCEEEEEECCCc
Q 002407 559 PICSFQGHLD--DVLDLSWSKSQHLLSSSM---DKTVRLWHLSSKTCLKIFSHSD--YVTCIQFNPVDDRYFISGSLDAK 631 (927)
Q Consensus 559 ~i~~l~gH~~--~V~~l~~spd~~L~Sgs~---DgtV~lWDl~t~~~~~~~~h~~--~V~~v~fsp~dg~~L~sgs~Dg~ 631 (927)
.+.++ .|.. ....|.|++++.|+.++. ++.|+++|+.+++.+..+.... ....+++. ++.+.++.-.++.
T Consensus 11 vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 11 VLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNI 87 (266)
T ss_dssp EEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSE
T ss_pred EEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCE
Confidence 34444 3443 367999999877666653 5899999999999998876333 33345554 3344455556789
Q ss_pred EEEEeCCCCcEEEeccCC-CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 632 VRIWSIPERQVVDWNDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 632 I~IWDl~t~~~v~~~~~~-~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
+.++|..+.+++..+... .. ...+++||+.++++..++.|.++|..+.+....+.+... ......++.+.|.
T Consensus 88 v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~----~~p~~~~nele~~- 160 (266)
T 2iwa_A 88 GFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN----GHRVIRLNELEYI- 160 (266)
T ss_dssp EEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET----TEECCCEEEEEEE-
T ss_pred EEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC----CcccccceeEEEE-
Confidence 999999999888766443 22 234566888888887889999999999888777654211 0112346788888
Q ss_pred CCCcEEEEEECCCcEEEEECCc--ceEEEEeec-----------CCcceEEEEEecCCCEE-EEEECCCcEEEEECCCC
Q 002407 711 GSSSEVLVTSADSRIRVVDGID--LVHKFKGFR-----------NTNSQISASLTANGRYV-VSASEDSYVYVWKYEAE 775 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~-----------~~~~v~sv~fspdg~~L-asgs~Dg~I~IWdl~s~ 775 (927)
++ .+++....++.|.+.|..+ .+..+.... .......++|+|+++.| +++...+.|++.++...
T Consensus 161 dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 161 NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 55 3444444678999999654 344444321 11245789999998755 55557788999888764
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.7e-05 Score=87.76 Aligned_cols=204 Identities=11% Similarity=0.054 Sum_probs=127.2
Q ss_pred CCEEEEEecCCcEEEEEe---CCCcEEEEeCCCCcEEEEEe--------cCCceEEEEEccCCCCEEEEEEC-----CCc
Q 002407 568 DDVLDLSWSKSQHLLSSS---MDKTVRLWHLSSKTCLKIFS--------HSDYVTCIQFNPVDDRYFISGSL-----DAK 631 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs---~DgtV~lWDl~t~~~~~~~~--------h~~~V~~v~fsp~dg~~L~sgs~-----Dg~ 631 (927)
..+..+++++++.++.+. .++.++||.+.+++ +..+. +-..+..|+|++ +++++++-.. +..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCCCe
Confidence 678999999996554442 23435566555554 33332 346789999999 7776665433 578
Q ss_pred EEEEeCCCCcEEEeccCC-------CcEEEEEECCCCCEEEEE-E---CCCeEEEEECCCCeeeeeccc--cccc-----
Q 002407 632 VRIWSIPERQVVDWNDLH-------EMVTAACYTPDGQGALVG-S---YKGSCHLYNTSENKLQQKSPI--NLQN----- 693 (927)
Q Consensus 632 I~IWDl~t~~~v~~~~~~-------~~V~sla~spdg~~l~tg-s---~Dg~I~IwDl~~~~~~~~~~i--~~~~----- 693 (927)
|.+||+.+++++..+... ..+..+++++++..++++ . .++.|.+||+.+++......- ....
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 999999998866544332 346889999865555444 4 578999999988776554311 0000
Q ss_pred ----cccc---C------CCCCeEEEEEcCCCCcEEEEEECC-CcEEEEECCcc----------eEEEEeecCCcceEEE
Q 002407 694 ----KKKR---S------HQRKITGFQFAPGSSSEVLVTSAD-SRIRVVDGIDL----------VHKFKGFRNTNSQISA 749 (927)
Q Consensus 694 ----~~~~---~------h~~~Vtsl~fspdg~~~Llsgs~D-g~I~VwD~~~~----------~~~~~~~~~~~~v~sv 749 (927)
.... . ....+..|+|+|++. .|+++... ..|..++...+ ...+...........+
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi 253 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI 253 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence 0000 0 113468999999987 45555544 46666652110 0000111112234568
Q ss_pred EEecCCCEEEEEECCCcEEEEECCC
Q 002407 750 SLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 750 ~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+++++|.++++...++.|.+|+..+
T Consensus 254 a~d~~G~l~va~~~~~~V~~~d~~~ 278 (343)
T 2qe8_A 254 SIDKDHNIYVGDLAHSAIGVITSAD 278 (343)
T ss_dssp EECTTCCEEEEEGGGTEEEEEETTT
T ss_pred EECCCCCEEEEccCCCeEEEEECCC
Confidence 9999999999998899999999844
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00022 Score=75.38 Aligned_cols=244 Identities=8% Similarity=-0.034 Sum_probs=138.5
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecCcCcccceeecccccCccccEEEE
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA-GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSg-s~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v 509 (927)
..|+.++...+..........+......+..++|++++..|+.+ ...+.|.+++...... ..+. .........+
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~----~~~~~~p~~i 84 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTII----RQDLGSPEGI 84 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEE----CTTCCCEEEE
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEE----ECCCCCccEE
Confidence 46777776655443211111112223457899999976655554 4578999999875432 2221 1112334556
Q ss_pred ccCCCC-CeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEc-cCCCCEEEEEecCC-cEEEEEeC
Q 002407 510 NGSPEP-TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS-QHLLSSSM 586 (927)
Q Consensus 510 ~~spd~-~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~-gH~~~V~~l~~spd-~~L~Sgs~ 586 (927)
++.+++ .+.++......+. ++++.++....+. ........++++|+ +.|+.+..
T Consensus 85 a~d~~~~~lyv~d~~~~~I~-----------------------~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~ 141 (267)
T 1npe_A 85 ALDHLGRTIFWTDSQLDRIE-----------------------VAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW 141 (267)
T ss_dssp EEETTTTEEEEEETTTTEEE-----------------------EEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred EEEecCCeEEEEECCCCEEE-----------------------EEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEEC
Confidence 666643 3333332223332 1222222222221 12245688999995 77766654
Q ss_pred ---CCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEE-EEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCC
Q 002407 587 ---DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFI-SGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDG 661 (927)
Q Consensus 587 ---DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~-sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg 661 (927)
.+.|..+++.......... .-.....++++| ++..|+ +-...+.|.++|+.................+++. +
T Consensus 142 ~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~-~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~ 218 (267)
T 1npe_A 142 NRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--G 218 (267)
T ss_dssp CSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--T
T ss_pred CCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcC-CCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--C
Confidence 3688888886543322222 234678999999 665554 4445678999999866544443333455667654 4
Q ss_pred CEEEEEE-CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 662 QGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 662 ~~l~tgs-~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
..|+++. ..+.|.++|..+++....+.. .......++++.|++.
T Consensus 219 ~~lyva~~~~~~v~~~d~~~g~~~~~i~~--------g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 219 KNLYYTDWKTNSVIAMDLAISKEMDTFHP--------HKQTRLYGITIALSQC 263 (267)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEECC--------SSCCCCCCEEEECSCC
T ss_pred CEEEEEECCCCeEEEEeCCCCCceEEEcc--------ccccccceeeecCccC
Confidence 5555555 468999999999887766531 2222466777887653
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=5.3e-05 Score=82.69 Aligned_cols=196 Identities=8% Similarity=0.011 Sum_probs=121.0
Q ss_pred CEEEEEecC-CcEEEEEeCCCcEEEEeCCCCcEEEEEe-----cCCceEEEEEccCCCCEEEEEEC--------------
Q 002407 569 DVLDLSWSK-SQHLLSSSMDKTVRLWHLSSKTCLKIFS-----HSDYVTCIQFNPVDDRYFISGSL-------------- 628 (927)
Q Consensus 569 ~V~~l~~sp-d~~L~Sgs~DgtV~lWDl~t~~~~~~~~-----h~~~V~~v~fsp~dg~~L~sgs~-------------- 628 (927)
.+..|++.+ ++.|+.+...+.|..+|..++....... .......+++.+.+++++++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~ 160 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT 160 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence 467889987 6888888777778999987654322221 12356889998734555555322
Q ss_pred ---CCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEE-ECCCeEEEEECCCCeeeeecccccccccccCCCCCeE
Q 002407 629 ---DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVG-SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704 (927)
Q Consensus 629 ---Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tg-s~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt 704 (927)
++.|..||..+++.......-.....++++|+|+.|+++ ...+.|.+|++..........+ ..... ..
T Consensus 161 ~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~-------~~~~g-P~ 232 (322)
T 2fp8_A 161 SDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL-------VKIPN-PG 232 (322)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE-------EECSS-EE
T ss_pred cCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE-------EeCCC-CC
Confidence 367888998777654433322445679999999977666 4568899999875321000000 00112 77
Q ss_pred EEEEcCCCCcEEEEEEC----------CCcEEEEECC-cceEEEEeecC--CcceEEEEEecCCCEEEEEECCCcEEEEE
Q 002407 705 GFQFAPGSSSEVLVTSA----------DSRIRVVDGI-DLVHKFKGFRN--TNSQISASLTANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~----------Dg~I~VwD~~-~~~~~~~~~~~--~~~v~sv~fspdg~~Lasgs~Dg~I~IWd 771 (927)
.+++.++|. ++++... .+.|..+|.. +....+..... ...+..+++ .+++++++....+.|.+++
T Consensus 233 gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 233 NIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp EEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred CeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence 899999886 4555433 4678888853 33334433211 234555665 4666666666788899998
Q ss_pred CCC
Q 002407 772 YEA 774 (927)
Q Consensus 772 l~s 774 (927)
+..
T Consensus 311 ~~~ 313 (322)
T 2fp8_A 311 YDK 313 (322)
T ss_dssp C--
T ss_pred ccc
Confidence 864
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.33 E-value=9.9e-06 Score=95.05 Aligned_cols=185 Identities=9% Similarity=0.036 Sum_probs=116.6
Q ss_pred CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC-------------------------------------
Q 002407 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA------------------------------------- 630 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg------------------------------------- 630 (927)
+.|.++|..+.+.+..+.-......++++| +++++++.+.+.
T Consensus 175 ~~vtvID~~t~~v~~qI~Vgg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i 253 (595)
T 1fwx_A 175 NVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 253 (595)
T ss_dssp EEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred ceEEEEECCCCeEEEEEEeCCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence 456677777777776666433456677777 777777766442
Q ss_pred -cEEEEeCCC--CcE-EEeccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCCCeeeee--cccccccccccCCCCCe
Q 002407 631 -KVRIWSIPE--RQV-VDWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQK--SPINLQNKKKRSHQRKI 703 (927)
Q Consensus 631 -~I~IWDl~t--~~~-v~~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~~~~~~~--~~i~~~~~~~~~h~~~V 703 (927)
.|.+.|..+ ++. +..+........+.++|||+++++++ .+.+|.++|+.+.+.... +................
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP 333 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP 333 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence 477777776 434 44444455677899999999887776 467899999986531100 00000000012344568
Q ss_pred EEEEEcCCCCcEEEEEECCCcEEEEECCc------------ceEEEEeecCCcce-E----EEEEecCCCEEEEEEC---
Q 002407 704 TGFQFAPGSSSEVLVTSADSRIRVVDGID------------LVHKFKGFRNTNSQ-I----SASLTANGRYVVSASE--- 763 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs~Dg~I~VwD~~~------------~~~~~~~~~~~~~v-~----sv~fspdg~~Lasgs~--- 763 (927)
..++|+|+| ..+++.-.|++|.+||... .+.++..+ ..+- . ...++|||++|+++..
T Consensus 334 ~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~--yqpGh~~~~~g~t~~~DGk~l~~~Nk~sk 410 (595)
T 1fwx_A 334 LHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH--YQPGHLKTVMGETLDATNDWLVCLSKFSK 410 (595)
T ss_dssp EEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS--SCEEEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred ceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc--cccccceeccceEeCCCCCEEEEcCCCCc
Confidence 899999999 6777788999999999433 33333332 2111 1 2245799999999864
Q ss_pred CCc----------EEEEECCCCC
Q 002407 764 DSY----------VYVWKYEAES 776 (927)
Q Consensus 764 Dg~----------I~IWdl~s~~ 776 (927)
|.. -.++|+..++
T Consensus 411 dr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 411 DRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TSSCCCCSSCCEEEEEEECSSSS
T ss_pred cccccCCCCCCCcceEEEcCCCc
Confidence 432 1889995543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.6e-05 Score=86.61 Aligned_cols=187 Identities=7% Similarity=0.053 Sum_probs=126.9
Q ss_pred EEEEEeCCCcEEEEeCCCC----cEEEEEe-------cC-CceEEEEEccCCCCEEEEEECC------CcEEEEeCCCCc
Q 002407 580 HLLSSSMDKTVRLWHLSSK----TCLKIFS-------HS-DYVTCIQFNPVDDRYFISGSLD------AKVRIWSIPERQ 641 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~----~~~~~~~-------h~-~~V~~v~fsp~dg~~L~sgs~D------g~I~IWDl~t~~ 641 (927)
.++++-.++.|.++|+.+. +..+++. .. .....+...| ++ +++++..+ +.|.++|..+.+
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~ 175 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFE 175 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCe
Confidence 3566777899999999765 6666662 11 2456678889 88 77776655 789999999999
Q ss_pred EEEeccCC----CcEEEEEECCCCCEEEEEE-------------------CCCeEEEEECCCCeeeeecccccccccccC
Q 002407 642 VVDWNDLH----EMVTAACYTPDGQGALVGS-------------------YKGSCHLYNTSENKLQQKSPINLQNKKKRS 698 (927)
Q Consensus 642 ~v~~~~~~----~~V~sla~spdg~~l~tgs-------------------~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~ 698 (927)
++...... ..-..+-|+|+++.+++.. ...+|.+||+.+++...++.+. .
T Consensus 176 v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg-------~ 248 (462)
T 2ece_A 176 PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG-------E 248 (462)
T ss_dssp EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC-------T
T ss_pred EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC-------C
Confidence 88755432 2234577899999888874 3688999999998877765431 1
Q ss_pred CCCCeEEEEE--cCCCCcEEEEEE-----CCCcEEEEEC--Ccc--eEEEEeec----C------------CcceEEEEE
Q 002407 699 HQRKITGFQF--APGSSSEVLVTS-----ADSRIRVVDG--IDL--VHKFKGFR----N------------TNSQISASL 751 (927)
Q Consensus 699 h~~~Vtsl~f--spdg~~~Llsgs-----~Dg~I~VwD~--~~~--~~~~~~~~----~------------~~~v~sv~f 751 (927)
.......+.| +|+++..++++- .+++|.+|.. ... .+.+.... . ......+.+
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 1223445555 999986666666 7778887652 111 11111000 0 234567899
Q ss_pred ecCCCEEEEEEC-CCcEEEEECCCC
Q 002407 752 TANGRYVVSASE-DSYVYVWKYEAE 775 (927)
Q Consensus 752 spdg~~Lasgs~-Dg~I~IWdl~s~ 775 (927)
++||++|.++.. .+.|.+||+...
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECSST
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCC
Confidence 999999988775 678999999754
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.6e-05 Score=80.06 Aligned_cols=190 Identities=7% Similarity=-0.018 Sum_probs=129.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccc
Q 002407 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (927)
Q Consensus 457 ~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~ 536 (927)
.-...|.|+ ++.++++.+.+|.|+++|+.+++.+.+++ ..
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l-~~-------------------------------------- 94 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMER-LG-------------------------------------- 94 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEE-CT--------------------------------------
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEEC-CC--------------------------------------
Confidence 345788897 46777888899999999999887655430 00
Q ss_pred cccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEc
Q 002407 537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFN 616 (927)
Q Consensus 537 ~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fs 616 (927)
.---..+++..+...+..-.++.+.+||..+.+.+..+.....-+.+++
T Consensus 95 ------------------------------~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~- 143 (268)
T 3nok_A 95 ------------------------------NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCY- 143 (268)
T ss_dssp ------------------------------TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEEE-
T ss_pred ------------------------------CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEec-
Confidence 0000113333334444455788999999999999999986555455554
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC------CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccc
Q 002407 617 PVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN 690 (927)
Q Consensus 617 p~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~------~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~ 690 (927)
+++.|+.+..++.|.++|..+.+++...... ..++.+.|. +|+.++....+..|.+.|..+++.+..+.+.
T Consensus 144 --Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 144 --WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp --ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred --CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECC
Confidence 5677777777889999999998877654432 255677776 7765544446789999999999998887654
Q ss_pred cc-ccc---ccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 691 LQ-NKK---KRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 691 ~~-~~~---~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
-. ... ........++|++.|+++.++++|-
T Consensus 221 ~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 221 ALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp HHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 11 100 1123356799999998886666653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00027 Score=74.04 Aligned_cols=138 Identities=10% Similarity=0.023 Sum_probs=96.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC------CcE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH------EMV 652 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~------~~V 652 (927)
......-.++.+.+||..+.+.+.++.....-..++ + ++..|+.+..++.|.++|..+.+.+...... ..+
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~l 152 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--S-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNL 152 (243)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--E-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred EEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--e-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccc
Confidence 334445568899999999999999998655545555 4 5666666667889999999998877654432 356
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccc----cCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 653 TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKK----RSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 653 ~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~----~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
+.+.+. +|+.++..-.+..|.+.|..+++....+.+.-..... .......++|++.|++..++++|-
T Consensus 153 NeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 153 NELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 667765 6665544446789999999999998887654211111 123346799999998885555553
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=3.1e-05 Score=86.82 Aligned_cols=98 Identities=9% Similarity=-0.096 Sum_probs=76.5
Q ss_pred EEEEeCCC----cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEE----------CCCcEEEEeCCCCcEEEec
Q 002407 581 LLSSSMDK----TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS----------LDAKVRIWSIPERQVVDWN 646 (927)
Q Consensus 581 L~Sgs~Dg----tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs----------~Dg~I~IWDl~t~~~v~~~ 646 (927)
+++-..++ +|.++|..+++.+..+.-...- .+.|+| ++++++++. .++.|.+||+.+++.+..+
T Consensus 35 yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I 112 (368)
T 1mda_H 35 HITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI 112 (368)
T ss_dssp EEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE
T ss_pred EEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEE
Confidence 44444444 8889999999999999833333 799999 888888876 3678999999999988766
Q ss_pred cCC--------CcEEEEEECCCCCEEEEEEC--CCeEEE--EECCC
Q 002407 647 DLH--------EMVTAACYTPDGQGALVGSY--KGSCHL--YNTSE 680 (927)
Q Consensus 647 ~~~--------~~V~sla~spdg~~l~tgs~--Dg~I~I--wDl~~ 680 (927)
... .....++++|||++++++.. ...+.+ +|+.+
T Consensus 113 ~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 113 ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred ECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 433 34567999999999999875 456888 88866
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00012 Score=77.42 Aligned_cols=196 Identities=7% Similarity=0.011 Sum_probs=127.9
Q ss_pred eEEEccCCCC--EEEEEecCCcEEEEEeCCC--cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 560 ICSFQGHLDD--VLDLSWSKSQHLLSSSMDK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 560 i~~l~gH~~~--V~~l~~spd~~L~Sgs~Dg--tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
+.++ .|... ...|.|+.+.++.+.+.+| .|+++|+.+++.+..+............+.++.+.+..-.++.+.+|
T Consensus 34 v~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 34 VHSY-PHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp EEEE-ECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred EEEe-cCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 4444 35443 4788898434455666665 89999999999999887555554433333133444444458899999
Q ss_pred eCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 636 SIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 636 Dl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
|..+.+++..+.....-..+ +++++.|+.+..++.|.++|..+.+....+.+.... ..-..++.+.|. ++. +
T Consensus 113 D~~t~~~~~ti~~~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g----~~~~~lNELe~~-~G~-l 184 (262)
T 3nol_A 113 NIRNLRQVRSFNYDGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG----EELPELNELEWV-DGE-I 184 (262)
T ss_dssp ETTTCCEEEEEECSSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT----EECCCEEEEEEE-TTE-E
T ss_pred ECccCcEEEEEECCCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC----ccccccceeEEE-CCE-E
Confidence 99999988876655433333 467888888777888999999999888776542110 111345567776 453 4
Q ss_pred EEEEECCCcEEEEECCc--ceEEEEeec----------CCcceEEEEEecCCCEEEEEECC
Q 002407 716 VLVTSADSRIRVVDGID--LVHKFKGFR----------NTNSQISASLTANGRYVVSASED 764 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~--~~~~~~~~~----------~~~~v~sv~fspdg~~Lasgs~D 764 (927)
++..-.+..|.+.|..+ .+..+.... ...-...++|+|+++.|+..+..
T Consensus 185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 44444678999999643 444444321 12245789999998888777754
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00013 Score=77.23 Aligned_cols=184 Identities=10% Similarity=0.009 Sum_probs=126.7
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEE--EEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTC--IQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN 646 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~--v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~ 646 (927)
-...|.|+.+.++++.+.++.|+++|+.+++.+..+ ....... +++. .+.+++..-.++.+.+||..+.+++..+
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 347888886666778888899999999999988777 4444443 5554 3455555556889999999999998876
Q ss_pred cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 647 ~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
.....-..++ ++++.|+++..++.|.++|..+.+....+.+.... ..-..++.+.|. +|. +++..-.+..|.
T Consensus 133 ~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g----~~v~~lNeLe~~-dG~-lyanvw~s~~I~ 204 (268)
T 3nok_A 133 RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRG----QPVELINELECA-NGV-IYANIWHSSDVL 204 (268)
T ss_dssp ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETT----EECCCEEEEEEE-TTE-EEEEETTCSEEE
T ss_pred eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCC----cccccccccEEe-CCE-EEEEECCCCeEE
Confidence 6554433444 67888888888999999999999988876653211 122345777777 453 444444678999
Q ss_pred EEECCc--ceEEEEeec-----------CCcceEEEEEecCCCEEEEEEC
Q 002407 727 VVDGID--LVHKFKGFR-----------NTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 727 VwD~~~--~~~~~~~~~-----------~~~~v~sv~fspdg~~Lasgs~ 763 (927)
+.|..+ .+..+.... ...-...++++|+++.|+..+.
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 999643 444444321 1234578999998766665554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00035 Score=73.20 Aligned_cols=204 Identities=8% Similarity=-0.017 Sum_probs=132.4
Q ss_pred ceEEEccCCC--CEEEEEecCCcEEEEEeCC--CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 559 PICSFQGHLD--DVLDLSWSKSQHLLSSSMD--KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 559 ~i~~l~gH~~--~V~~l~~spd~~L~Sgs~D--gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
.+.++ .|.. -...|.|+++.++.+.+.+ ..|+.+|+.+++.+..+............+.++++++..-.++.+.+
T Consensus 11 v~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV 89 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence 34444 4543 4668999875555566665 48999999999999988755444433333323445555556889999
Q ss_pred EeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 635 WSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 635 WDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
||..+.+++..+.....-..++ ++++.|+++..++.|.++|..+.+....+.+.... ..-..++.+.+. ++.
T Consensus 90 ~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g----~~~~~lNeLe~~-~G~- 161 (243)
T 3mbr_X 90 YDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG----RPLDNLNELEWV-NGE- 161 (243)
T ss_dssp EETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETT----EECCCEEEEEEE-TTE-
T ss_pred EECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC----cccccceeeEEe-CCE-
Confidence 9999999988766654434444 57778888878899999999999888776643211 112345667766 342
Q ss_pred EEEEEECCCcEEEEECCc--ceEEEEeec-----------CCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 715 EVLVTSADSRIRVVDGID--LVHKFKGFR-----------NTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 715 ~Llsgs~Dg~I~VwD~~~--~~~~~~~~~-----------~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
+++..-.+..|.+.|..+ .+..+.... ...-...++++|+++.|+..+.-- =++|.+
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w-p~~~~v 231 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW-PMLYEI 231 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC-SEEEEE
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC-CcEEEE
Confidence 444444678899999543 344444221 123457899999887777766532 334444
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0019 Score=69.80 Aligned_cols=185 Identities=11% Similarity=0.078 Sum_probs=109.2
Q ss_pred CEEEEEecCCcEEEEEeC--CC-cEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc--
Q 002407 569 DVLDLSWSKSQHLLSSSM--DK-TVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-- 641 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~--Dg-tV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~-- 641 (927)
.+..|++.+++.|+.+.. ++ .|..++..+++...... .......+++.+ ++..+++-..++.|.++|..+++
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEe
Confidence 366788888855555542 22 46677777777654443 223345556555 55445544458889999987653
Q ss_pred EEEec---------cCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCC-CeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 642 VVDWN---------DLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 642 ~v~~~---------~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
+.... ..-.....+ +|++++|+++. ..+.|..|++.. +..... .. .........+++.+
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~-~~-------~~~~~~P~gi~vd~ 221 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP-EI-------FVEQTNIDDFAFDV 221 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC-EE-------EEESCCCSSEEEBT
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc-EE-------EeccCCCCCeEECC
Confidence 22110 011234555 78887766654 467899999875 322111 00 01113456788999
Q ss_pred CCCcEEEEEECCCcEEEEECCcceEEEE-eecCCcceEEEEEe---cCCCEEEEEECCC
Q 002407 711 GSSSEVLVTSADSRIRVVDGIDLVHKFK-GFRNTNSQISASLT---ANGRYVVSASEDS 765 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~VwD~~~~~~~~~-~~~~~~~v~sv~fs---pdg~~Lasgs~Dg 765 (927)
+|. ++++....+.|.++|.......+. .........+++|. ++++.|+.++..+
T Consensus 222 dG~-l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 222 EGN-LYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCC-EEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCC-EEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 885 666666778999999653332222 22223567899998 8887777666544
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0002 Score=86.89 Aligned_cols=191 Identities=12% Similarity=0.132 Sum_probs=120.5
Q ss_pred CCcEEEEeCCCCcEEEEEecC--C------------------------------ceEEEEEccCCCCEEEEEECCC----
Q 002407 587 DKTVRLWHLSSKTCLKIFSHS--D------------------------------YVTCIQFNPVDDRYFISGSLDA---- 630 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~~h~--~------------------------------~V~~v~fsp~dg~~L~sgs~Dg---- 630 (927)
++.|+.+|..+++.+..+... . ....+++.| ...+++.+..++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 588999999999998877521 0 012468888 777888887766
Q ss_pred ---------------cEEEEeCCCCcEEEeccCC----------CcEEEEEECCCCC---EEEEEECCCeEEEEECCCCe
Q 002407 631 ---------------KVRIWSIPERQVVDWNDLH----------EMVTAACYTPDGQ---GALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 631 ---------------~I~IWDl~t~~~v~~~~~~----------~~V~sla~spdg~---~l~tgs~Dg~I~IwDl~~~~ 682 (927)
.|..+|..+++.+-.+... ..+....+..+|+ .+++++.+|.++++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 3999999999987543321 2233333344675 68899999999999999999
Q ss_pred eeeeccccccc-------c--------cccCCC------------CCeEEEEEcCCCCcEEEEE----------------
Q 002407 683 LQQKSPINLQN-------K--------KKRSHQ------------RKITGFQFAPGSSSEVLVT---------------- 719 (927)
Q Consensus 683 ~~~~~~i~~~~-------~--------~~~~h~------------~~Vtsl~fspdg~~~Llsg---------------- 719 (927)
++....+.... . ...... ..-..++++|+.. ++++.
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~ 414 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG-LVYIPYQEVPGVYRNEGKDFV 414 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT-EEEEEEEECCEEECCCGGGCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC-EEEEeccccceEeeeeccccc
Confidence 87443221100 0 000000 0011256777655 33321
Q ss_pred --------------------ECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 720 --------------------SADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 720 --------------------s~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
..++.|..||..+.....+.... .......+...+.+|+.++.|+.|++||.++++...
T Consensus 415 ~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 415 TRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp CCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence 12378999997766555544322 223333445567889999999999999999987654
Q ss_pred c
Q 002407 780 R 780 (927)
Q Consensus 780 ~ 780 (927)
+
T Consensus 494 ~ 494 (668)
T 1kv9_A 494 Q 494 (668)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0017 Score=70.55 Aligned_cols=192 Identities=11% Similarity=0.023 Sum_probs=123.7
Q ss_pred CCEEEEEecCCcE-EEEEeCCCcEEEEeCCCCcEEEEEe-c-------------------CCceEEEEEccCCCCEEEEE
Q 002407 568 DDVLDLSWSKSQH-LLSSSMDKTVRLWHLSSKTCLKIFS-H-------------------SDYVTCIQFNPVDDRYFISG 626 (927)
Q Consensus 568 ~~V~~l~~spd~~-L~Sgs~DgtV~lWDl~t~~~~~~~~-h-------------------~~~V~~v~fsp~dg~~L~sg 626 (927)
....+++|.+++. ++++..++.|..|+..+++...... . ...+..|++.+ +...|+.+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-CCCcEEEE
Confidence 4456788988854 8888889999999988765432211 0 13578899986 34456666
Q ss_pred ECCCcEEEEeCCCCcEEEeccC-----CCcEEEEEECC-CCCEEEEEEC-----------------CCeEEEEECCCCee
Q 002407 627 SLDAKVRIWSIPERQVVDWNDL-----HEMVTAACYTP-DGQGALVGSY-----------------KGSCHLYNTSENKL 683 (927)
Q Consensus 627 s~Dg~I~IWDl~t~~~v~~~~~-----~~~V~sla~sp-dg~~l~tgs~-----------------Dg~I~IwDl~~~~~ 683 (927)
...+.|..+|..+++...+... ...+..+++.+ +|...++-.. ++.|..||..+++.
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 5556688899876643322211 13578899999 9976665432 36788999877764
Q ss_pred eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc----ceEEEEeecCCcceEEEEEecCCCEEE
Q 002407 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID----LVHKFKGFRNTNSQISASLTANGRYVV 759 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~----~~~~~~~~~~~~~v~sv~fspdg~~La 759 (927)
.... ........++|+|++..++++-...+.|.+|+... ....+.. ... ...++++++|++.+
T Consensus 178 ~~~~----------~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 178 TLLL----------KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWV 244 (322)
T ss_dssp EEEE----------EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEE
T ss_pred EEec----------cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEE
Confidence 3221 11123567899999874555556778999998542 1222222 122 67789999998777
Q ss_pred EEEC----------CCcEEEEECC
Q 002407 760 SASE----------DSYVYVWKYE 773 (927)
Q Consensus 760 sgs~----------Dg~I~IWdl~ 773 (927)
+... .+.|..++..
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECTT
T ss_pred EecCcccccccCCCccEEEEECCC
Confidence 6654 3556666653
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.00 E-value=7.9e-05 Score=87.47 Aligned_cols=185 Identities=13% Similarity=0.126 Sum_probs=129.4
Q ss_pred cEEEEEe-CCCcEEEEeCCCCcEEEEEe--cCCceEEEEE-c-cCCCCEEEEEEC------------------CCcEEEE
Q 002407 579 QHLLSSS-MDKTVRLWHLSSKTCLKIFS--HSDYVTCIQF-N-PVDDRYFISGSL------------------DAKVRIW 635 (927)
Q Consensus 579 ~~L~Sgs-~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~f-s-p~dg~~L~sgs~------------------Dg~I~IW 635 (927)
.+|+... .+..|.+.|+.+.++.+++. ....+..+++ . | ++.++++++. ++.+.++
T Consensus 102 ~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI 180 (595)
T 1fwx_A 102 RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 180 (595)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence 3444444 45679999999999988665 4566889998 4 8 8888888852 4579999
Q ss_pred eCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCC--------------------------------------eEEEEE
Q 002407 636 SIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKG--------------------------------------SCHLYN 677 (927)
Q Consensus 636 Dl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg--------------------------------------~I~IwD 677 (927)
|..+.+++...........++++|+|+++++.+.+. .|.+.|
T Consensus 181 D~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID 260 (595)
T 1fwx_A 181 DADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVD 260 (595)
T ss_dssp ETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEE
T ss_pred ECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEe
Confidence 999988877655544567788999999999988653 244444
Q ss_pred CCC--Cee-eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce-----------EEEEeecCC
Q 002407 678 TSE--NKL-QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV-----------HKFKGFRNT 743 (927)
Q Consensus 678 l~~--~~~-~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~-----------~~~~~~~~~ 743 (927)
..+ ++. ...+ .-.....++.++|||+.+++++..+.+|.++|..+.. .........
T Consensus 261 ~~~~~~~~~~~~I----------pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG 330 (595)
T 1fwx_A 261 GRKEASSLFTRYI----------PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG 330 (595)
T ss_dssp CSGGGCCSSEEEE----------EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred CcccCCceeEEEE----------ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence 444 211 1111 1223456789999999777777789999999976542 111222234
Q ss_pred cceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 744 NSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 744 ~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
.....++|+++|...++.-.|+.|.+|++..
T Consensus 331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 4567899999994445556799999999976
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0017 Score=70.24 Aligned_cols=199 Identities=10% Similarity=-0.027 Sum_probs=122.8
Q ss_pred CCEEEEEecCCcEEEEEe-CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC--cEEEEeCCCCcEEE
Q 002407 568 DDVLDLSWSKSQHLLSSS-MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA--KVRIWSIPERQVVD 644 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs-~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg--~I~IWDl~t~~~v~ 644 (927)
.....++|++++.|+.+. ..+.|..||.... ....+.....+..|++.+ +++++++..... .|..++..++++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 467889999986555554 7889999998754 444555566789999999 888666554332 47777878887654
Q ss_pred eccC--CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee-cccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 645 WNDL--HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK-SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 645 ~~~~--~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~-~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
.... ......++..+++..+++-..++.|+++|...+..... ..-..............+.+ +|++..++++-..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 3322 23345566666554444444588999999876532111 00000000001122345555 7777756666677
Q ss_pred CCcEEEEECCc---c--eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 722 DSRIRVVDGID---L--VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 722 Dg~I~VwD~~~---~--~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
.+.|.+|+... . ...+... .....++++++|+++++....+.|.+|+..
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 88999999532 1 1222111 234567889999887777777889888754
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0025 Score=67.39 Aligned_cols=208 Identities=11% Similarity=0.177 Sum_probs=135.1
Q ss_pred EEccCCCCEEEEEecCC-cEEE-EEeCCCcEEEEeCCCCcEEEEEecC--CceEEEEEccCCCCEEEEEECCCcEEEEeC
Q 002407 562 SFQGHLDDVLDLSWSKS-QHLL-SSSMDKTVRLWHLSSKTCLKIFSHS--DYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637 (927)
Q Consensus 562 ~l~gH~~~V~~l~~spd-~~L~-Sgs~DgtV~lWDl~t~~~~~~~~h~--~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl 637 (927)
.+.+-...+..|+|.|+ +.|+ +...++.|...|.. ++.++.+... ...-.|++.+ ++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence 34566678999999987 6554 57778899999998 8888877632 5678899988 7777676656778999987
Q ss_pred CCCcE---EEec-------cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccc-cccccccCCCCCeEEE
Q 002407 638 PERQV---VDWN-------DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN-LQNKKKRSHQRKITGF 706 (927)
Q Consensus 638 ~t~~~---v~~~-------~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~-~~~~~~~~h~~~Vtsl 706 (927)
..... +... ........++|+|.++.|+++.......||.+........+.+. ............+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 65431 2211 12345689999999988888877666566655410000000100 0000011234567899
Q ss_pred EEcCCCCcEEEEEECCCcEEEEECCcc-eEEEEeecC-------CcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 707 QFAPGSSSEVLVTSADSRIRVVDGIDL-VHKFKGFRN-------TNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 707 ~fspdg~~~Llsgs~Dg~I~VwD~~~~-~~~~~~~~~-------~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
+++|....+++.......|.++|.... +..+..... ....-.++|.++|++.++ ++-+.+++|.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 999988777777778888999995433 333333211 124568999999985555 77776776653
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0023 Score=75.89 Aligned_cols=198 Identities=12% Similarity=0.044 Sum_probs=118.8
Q ss_pred cEEEEEeC------CCcEEEEeCCCCcEEEEEecCCce---------------------------------------EEE
Q 002407 579 QHLLSSSM------DKTVRLWHLSSKTCLKIFSHSDYV---------------------------------------TCI 613 (927)
Q Consensus 579 ~~L~Sgs~------DgtV~lWDl~t~~~~~~~~h~~~V---------------------------------------~~v 613 (927)
+.++.++. ++.|+.+|..+++.+..+...... ..+
T Consensus 161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~ 240 (571)
T 2ad6_A 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence 45555554 789999999999998877632211 135
Q ss_pred EEccCCCCEEEEEECC----------------CcEEEEeCCCCcEEEeccCC----------CcEEEEEECCCCC---EE
Q 002407 614 QFNPVDDRYFISGSLD----------------AKVRIWSIPERQVVDWNDLH----------EMVTAACYTPDGQ---GA 664 (927)
Q Consensus 614 ~fsp~dg~~L~sgs~D----------------g~I~IWDl~t~~~v~~~~~~----------~~V~sla~spdg~---~l 664 (927)
++.+ ....++.+..+ +.|..+|..+++.+-..... ....-+....+|+ .+
T Consensus 241 a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v 319 (571)
T 2ad6_A 241 AYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLL 319 (571)
T ss_dssp EEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEE
T ss_pred EEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEE
Confidence 6667 55566666532 35999999999987533211 1112223334774 57
Q ss_pred EEEECCCeEEEEECCCCeeeeecccccccc---c-ccCCCCCe--------------------------EEEEEcCCCCc
Q 002407 665 LVGSYKGSCHLYNTSENKLQQKSPINLQNK---K-KRSHQRKI--------------------------TGFQFAPGSSS 714 (927)
Q Consensus 665 ~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~---~-~~~h~~~V--------------------------tsl~fspdg~~ 714 (927)
++++.+|.++++|..+++.+....+..... . ......++ ..++++|+..
T Consensus 320 ~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g- 398 (571)
T 2ad6_A 320 SHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR- 398 (571)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT-
T ss_pred EEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC-
Confidence 788899999999999998876654321000 0 00000000 2456777765
Q ss_pred EEEEEE-------------------------------------CCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCE
Q 002407 715 EVLVTS-------------------------------------ADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRY 757 (927)
Q Consensus 715 ~Llsgs-------------------------------------~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~ 757 (927)
++++.. .++.|..||..+.....+.... ..+....+...+.+
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~ 477 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGL 477 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTE
T ss_pred EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCE
Confidence 444432 3478889996654444433221 12222223334667
Q ss_pred EEEEECCCcEEEEECCCCCCcc
Q 002407 758 VVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 758 Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
|+.++.|+.|+.||.++++..-
T Consensus 478 v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 478 VWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEcCCCeEEEEECCCCCEEE
Confidence 7789999999999999987653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.007 Score=67.00 Aligned_cols=197 Identities=8% Similarity=-0.052 Sum_probs=126.2
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND- 647 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~- 647 (927)
..+|.+..++..|+.+ ....|+..++........+.....+..++|++.++.++++-...+.|..+++..........
T Consensus 35 ~~~C~~~~~~~~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 35 RRSCKALGPEPVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SSCEEESSSCCEEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred CCcccccccCceeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 3455555555555544 34568888888776666555556689999998455555555567889999988765444332
Q ss_pred CCCcEEEEEECCCCCEE-EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-CcE
Q 002407 648 LHEMVTAACYTPDGQGA-LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-SRI 725 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l-~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-g~I 725 (927)
.......+++.+.+..| ++-...+.|.++++......... .........+++.|.+..++++-... +.|
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~---------~~~l~~P~~iavdp~~g~ly~td~~~~~~I 184 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL---------WQSLEKPRAIALHPMEGTIYWTDWGNTPRI 184 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---------CTTCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE---------eCCCCCcceEEEecCcCeEEEeccCCCCEE
Confidence 22456788998755544 55555678999998764322211 12335578999999776555555555 788
Q ss_pred EEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCC
Q 002407 726 RVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAE 775 (927)
Q Consensus 726 ~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~ 775 (927)
..++...................++|++++..|..+. ..+.|..+++...
T Consensus 185 ~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 185 EASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp EEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 8888543222221122334567899998777666654 5667999998753
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0077 Score=66.66 Aligned_cols=200 Identities=8% Similarity=-0.007 Sum_probs=128.4
Q ss_pred CCCCEEEEEecCC-cEEEEE-eCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE
Q 002407 566 HLDDVLDLSWSKS-QHLLSS-SMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~Sg-s~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~ 642 (927)
....+..++|++. +.|+.+ ...+.|+.+++........+. .......+++.+.+++++++-...+.|.+.++.....
T Consensus 71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~ 150 (349)
T 3v64_C 71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 150 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence 3445789999975 665544 467889999998776555443 2345678999874566666666678899999876544
Q ss_pred EEec-cCCCcEEEEEECCCCCEEEEEE-CC-CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 643 VDWN-DLHEMVTAACYTPDGQGALVGS-YK-GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 643 v~~~-~~~~~V~sla~spdg~~l~tgs-~D-g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
.... ..-.....+++.|.+..|+... .. +.|..+++......... .......+.++++|++..++++-
T Consensus 151 ~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~---------~~~~~~PnGla~d~~~~~lY~aD 221 (349)
T 3v64_C 151 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA---------DTHLFWPNGLTIDYAGRRMYWVD 221 (349)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC---------CSSCSCEEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE---------ECCCCCcceEEEeCCCCEEEEEE
Confidence 3333 2335689999999666555544 34 77888888754322211 12344578999999877666666
Q ss_pred ECCCcEEEEECCc-ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 720 SADSRIRVVDGID-LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 720 s~Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
...+.|..+|... ....+.. ........+++ ..+.++++-...+.|..++..++.
T Consensus 222 ~~~~~I~~~~~dG~~~~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 222 AKHHVIERANLDGSHRKAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp TTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCEEEEEeCCCCceEEEEe-CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence 6778899998542 2222221 12344567777 345555555567778888754543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0047 Score=69.40 Aligned_cols=201 Identities=7% Similarity=-0.003 Sum_probs=129.4
Q ss_pred cCCCCEEEEEecCC-cEEEEE-eCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 565 GHLDDVLDLSWSKS-QHLLSS-SMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 565 gH~~~V~~l~~spd-~~L~Sg-s~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
.....+..++|.+. +.|+.+ ...+.|+.+++........+. .......|++.+..++++++-...+.|.+.++....
T Consensus 113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~ 192 (386)
T 3v65_B 113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH 192 (386)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS
T ss_pred cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc
Confidence 34456889999975 665544 467889999998776555444 234567889987456666666667789998887654
Q ss_pred EEEecc-CCCcEEEEEECCCCCEEEEEEC-C-CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEE
Q 002407 642 VVDWND-LHEMVTAACYTPDGQGALVGSY-K-GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (927)
Q Consensus 642 ~v~~~~-~~~~V~sla~spdg~~l~tgs~-D-g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Lls 718 (927)
...... .-.....+++.|.+..|+.... . +.|..+++......... .......+.|+|+|++..++++
T Consensus 193 ~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~---------~~~~~~PnGlavd~~~~~lY~a 263 (386)
T 3v65_B 193 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA---------DTHLFWPNGLTIDYAGRRMYWV 263 (386)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE---------CSSCSCEEEEEEEGGGTEEEEE
T ss_pred eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE---------ECCCCCeeeEEEeCCCCEEEEE
Confidence 333332 3357899999997766655543 3 67888888754332221 1223457899999877766666
Q ss_pred EECCCcEEEEECCc-ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 719 TSADSRIRVVDGID-LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 719 gs~Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
-...+.|..+|... ....+.. ........+++ ..+.++++-...+.|..++..++.
T Consensus 264 D~~~~~I~~~d~dG~~~~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 264 DAKHHVIERANLDGSHRKAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp ETTTTEEEEECTTSCSCEEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCEEEEEeCCCCeeEEEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 67778899998532 2222221 22344567777 345555666667778888855544
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0059 Score=68.58 Aligned_cols=195 Identities=8% Similarity=-0.043 Sum_probs=124.3
Q ss_pred EEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC-C
Q 002407 571 LDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-H 649 (927)
Q Consensus 571 ~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~-~ 649 (927)
.|.+..+..+|+.+ ....|+.+++..............+..++|++.++.++++-...+.|..+++.......+... .
T Consensus 80 ~C~~~~~~~~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 158 (386)
T 3v65_B 80 SCKALGPEPVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 158 (386)
T ss_dssp CEEECSSCCEEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred eECCccccceeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence 34444444555444 346788899988776666665667899999984555555555678899999987765443332 2
Q ss_pred CcEEEEEECCCCCEE-EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-CcEEE
Q 002407 650 EMVTAACYTPDGQGA-LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-SRIRV 727 (927)
Q Consensus 650 ~~V~sla~spdg~~l-~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-g~I~V 727 (927)
.....+++.+.+..| ++-...+.|.++++......... .........+++.|.+..++++-... +.|..
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~---------~~~l~~P~giavdp~~g~ly~td~~~~~~I~r 229 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL---------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEA 229 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE---------CSSCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee---------cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEE
Confidence 355678888755544 44455678888888754322221 12335678999999777555555555 78888
Q ss_pred EECCcceEEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCC
Q 002407 728 VDGIDLVHKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAE 775 (927)
Q Consensus 728 wD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~ 775 (927)
++...................++|++++..|+.+. ..+.|..+++...
T Consensus 230 ~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 230 SSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp EETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred EeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 88543222222222344567899998776666554 5667999988753
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.004 Score=75.36 Aligned_cols=179 Identities=9% Similarity=0.123 Sum_probs=109.7
Q ss_pred EEEecCC-cEEEEEeCCC-------------------cEEEEeCCCCcEEEEEec---C-------CceEEEEEccCCCC
Q 002407 572 DLSWSKS-QHLLSSSMDK-------------------TVRLWHLSSKTCLKIFSH---S-------DYVTCIQFNPVDDR 621 (927)
Q Consensus 572 ~l~~spd-~~L~Sgs~Dg-------------------tV~lWDl~t~~~~~~~~h---~-------~~V~~v~fsp~dg~ 621 (927)
.+++.+. +.++.++.++ .|..+|..+++.+..+.. . .++....+.. +++
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~ 312 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DGK 312 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-CCc
Confidence 4566665 7777776665 499999999999988862 1 2233233333 554
Q ss_pred ---EEEEEECCCcEEEEeCCCCcEEEeccCCC-------------c------------------------EEEEEECCCC
Q 002407 622 ---YFISGSLDAKVRIWSIPERQVVDWNDLHE-------------M------------------------VTAACYTPDG 661 (927)
Q Consensus 622 ---~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~-------------~------------------------V~sla~spdg 661 (927)
.|+.++.+|.++++|..+++++....... . -..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 68899999999999999999873211110 0 0126778877
Q ss_pred CEEEEEE------------------------------------CCCeEEEEECCCCeeeeecccccccccccCCCCCeEE
Q 002407 662 QGALVGS------------------------------------YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG 705 (927)
Q Consensus 662 ~~l~tgs------------------------------------~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts 705 (927)
..+++.. .+|.|..||+.+++........ ..+..
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~----------~~~~~ 462 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP----------THWNG 462 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES----------SSCCC
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC----------CCCcC
Confidence 7666522 2378999999999987664321 11222
Q ss_pred EEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCc-ceEEEEEecCCC-EEEEEE
Q 002407 706 FQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTN-SQISASLTANGR-YVVSAS 762 (927)
Q Consensus 706 l~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~-~v~sv~fspdg~-~Lasgs 762 (927)
..+...+. ++++++.|+.|++||............... ...-+.+..+|+ |++.++
T Consensus 463 ~~~~t~gg-~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 463 GTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp CEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ceeEeCCC-EEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 22333344 788899999999999654444333322211 112234456776 455444
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.014 Score=63.50 Aligned_cols=202 Identities=9% Similarity=-0.020 Sum_probs=127.0
Q ss_pred CCCCEEEEEecCC-cEEEEE-eCCCcEEEEeCCC----CcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCC
Q 002407 566 HLDDVLDLSWSKS-QHLLSS-SMDKTVRLWHLSS----KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~Sg-s~DgtV~lWDl~t----~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~ 638 (927)
....+..++|++. +.|+.+ ...+.|..+++.. ......+. .-.....|++.+.+++++++-...+.|.++++.
T Consensus 28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~ 107 (316)
T 1ijq_A 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 107 (316)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC
Confidence 3456789999975 565544 4568999999886 22223332 224568899987355555665667889999987
Q ss_pred CCcEEEecc-CCCcEEEEEECCCCCEEEEEECC--CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 639 ERQVVDWND-LHEMVTAACYTPDGQGALVGSYK--GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 639 t~~~v~~~~-~~~~V~sla~spdg~~l~tgs~D--g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
......... .-.....+++.|.+..|+.+... +.|..+++......... .......+.+++++++..+
T Consensus 108 g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~---------~~~~~~P~gla~d~~~~~l 178 (316)
T 1ijq_A 108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---------TENIQWPNGITLDLLSGRL 178 (316)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE---------CSSCSCEEEEEEETTTTEE
T ss_pred CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE---------ECCCCCceEEEEeccCCEE
Confidence 655443332 33578899999976666555543 68888888654322111 1233567899999987756
Q ss_pred EEEEECCCcEEEEECCc-ceEEEEee-cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 716 VLVTSADSRIRVVDGID-LVHKFKGF-RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~-~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
+++-...+.|..+|... ....+... ........+++. .+.++++-...+.|..++..++..
T Consensus 179 Y~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 179 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred EEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence 66666778999999532 22333221 122345677775 355556666677888888766543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.025 Score=61.77 Aligned_cols=192 Identities=7% Similarity=0.015 Sum_probs=106.2
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEE--ecCCceEEEEEccCCCCEEEEEECCCcEEE-EeC--CCCcE
Q 002407 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRI-WSI--PERQV 642 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~--~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I-WDl--~t~~~ 642 (927)
+.+..|.+.+++.++.++.++.|.. ....++.-... .....+..+.+.| ++.+++.+ .+|.+.. +|- .+-+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVS-SRGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEE-TTSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEE-CCCcEEEEeCCCCCceeE
Confidence 3456677766666656666665432 22233322222 2456789999998 77777655 4455443 342 22223
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC
Q 002407 643 VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (927)
Q Consensus 643 v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D 722 (927)
+. ......+..+.+.+++..+ +.+.+|.+++.+...++........ .......+..+.+.+++. +++++.+
T Consensus 199 ~~-~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~-----~~~~~~~~~~v~~~~~~~--~~~~g~~ 269 (327)
T 2xbg_A 199 HN-RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSP-----LRRNSVGFLDLAYRTPNE--VWLAGGA 269 (327)
T ss_dssp EE-CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCT-----TSSCCSCEEEEEESSSSC--EEEEEST
T ss_pred CC-CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCC-----cccCCcceEEEEecCCCE--EEEEeCC
Confidence 32 2345678899999998755 4556788877653334433222110 001234588999988654 5555667
Q ss_pred CcEEEE-ECCcceEEEEee-cCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 723 SRIRVV-DGIDLVHKFKGF-RNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 723 g~I~Vw-D~~~~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
+.|.+- |....-..+... .....+..+.|.+++. +++++.+|.|+-++-
T Consensus 270 g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 270 GALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp TCEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred CeEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 777443 322221222211 1124566788876554 666678897776653
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.73 E-value=0.026 Score=63.61 Aligned_cols=211 Identities=9% Similarity=-0.016 Sum_probs=132.8
Q ss_pred CceEEEccCCCCEEEEEecCC-cEEEEE-eCCCcEEEEeCCCC----cEEEEEe-cCCceEEEEEccCCCCEEEEEECCC
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-QHLLSS-SMDKTVRLWHLSSK----TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDA 630 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~~L~Sg-s~DgtV~lWDl~t~----~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg 630 (927)
.....+......+..|+|++. +.|+.+ ...+.|+.+++... .....+. .......|++.+..++++++-...+
T Consensus 102 ~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~ 181 (400)
T 3p5b_L 102 SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG 181 (400)
T ss_dssp CSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred cceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCC
Confidence 333334445667889999985 665555 45688999998752 2333333 4456788999875566666666678
Q ss_pred cEEEEeCCCCcEEEecc-CCCcEEEEEECCCCCEEEEEEC--CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE
Q 002407 631 KVRIWSIPERQVVDWND-LHEMVTAACYTPDGQGALVGSY--KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 631 ~I~IWDl~t~~~v~~~~-~~~~V~sla~spdg~~l~tgs~--Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
.|.+.++.......... .-.....|++.|.+.+|+.... .+.|...++......... .......+.|+
T Consensus 182 ~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~---------~~~l~~P~gla 252 (400)
T 3p5b_L 182 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---------TENIQWPNGIT 252 (400)
T ss_dssp EEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE---------CSSCSCEEEEE
T ss_pred eEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE---------ECCCCceEEEE
Confidence 89999988765544433 3356899999997666666543 367988888754332221 12335678999
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCc-ceEEE-EeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 708 FAPGSSSEVLVTSADSRIRVVDGID-LVHKF-KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 708 fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~-~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
+++++..++++-...+.|..+|... ....+ ...........+++. .+.++++-...+.|..++..++...
T Consensus 253 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 253 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred EEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce
Confidence 9988775666666778899998532 22222 221223345566663 3445556666778888886665443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0028 Score=75.54 Aligned_cols=102 Identities=6% Similarity=-0.008 Sum_probs=70.1
Q ss_pred CCCcEEEEeCCCCcEEEEEecCCce---------------------------------------EEEEEccCCCCEEEEE
Q 002407 586 MDKTVRLWHLSSKTCLKIFSHSDYV---------------------------------------TCIQFNPVDDRYFISG 626 (927)
Q Consensus 586 ~DgtV~lWDl~t~~~~~~~~h~~~V---------------------------------------~~v~fsp~dg~~L~sg 626 (927)
.++.|+.+|..+++.+..+...... ..+++.+ ...+|+.+
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g 258 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFG 258 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEe
Confidence 3789999999999998877632221 1345666 66677777
Q ss_pred ECC----------------CcEEEEeCCCCcEEEeccCC--C--------cEEEEEEC-CCC---CEEEEEECCCeEEEE
Q 002407 627 SLD----------------AKVRIWSIPERQVVDWNDLH--E--------MVTAACYT-PDG---QGALVGSYKGSCHLY 676 (927)
Q Consensus 627 s~D----------------g~I~IWDl~t~~~v~~~~~~--~--------~V~sla~s-pdg---~~l~tgs~Dg~I~Iw 676 (927)
..+ +.|..+|..+++++-.+... + ...-+... .+| +.++.++.+|.++++
T Consensus 259 ~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEE
Confidence 655 37999999999987433221 1 11122232 567 467778899999999
Q ss_pred ECCCCeeeeecc
Q 002407 677 NTSENKLQQKSP 688 (927)
Q Consensus 677 Dl~~~~~~~~~~ 688 (927)
|..+++.+....
T Consensus 339 D~~tG~~lw~~~ 350 (599)
T 1w6s_A 339 DRTDGALVSANK 350 (599)
T ss_dssp ETTTCCEEEEEE
T ss_pred ECCCCCEeeccc
Confidence 999999876554
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0017 Score=79.78 Aligned_cols=145 Identities=8% Similarity=0.072 Sum_probs=81.1
Q ss_pred EEEecCC-cEEEEEeCC-----CcEEEEeCCCCcE--EEEEe--cCCceEEEEEccCCCCEEEEEEC---CCcEEEEeCC
Q 002407 572 DLSWSKS-QHLLSSSMD-----KTVRLWHLSSKTC--LKIFS--HSDYVTCIQFNPVDDRYFISGSL---DAKVRIWSIP 638 (927)
Q Consensus 572 ~l~~spd-~~L~Sgs~D-----gtV~lWDl~t~~~--~~~~~--h~~~V~~v~fsp~dg~~L~sgs~---Dg~I~IWDl~ 638 (927)
.+.|+|| ..|+....| ..|+++++.+++. ..++. .......+.|+| ++++|+..+. ...|.++|+.
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESS
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECC
Confidence 3567777 355554443 3588888887642 33333 334567889999 9998876653 3358888988
Q ss_pred CC--cE--EEeccC-CCcEEEEEECCCCCEEEEEECC-----CeEEEEECCCC-eeee-ecccccccccccCCCC--CeE
Q 002407 639 ER--QV--VDWNDL-HEMVTAACYTPDGQGALVGSYK-----GSCHLYNTSEN-KLQQ-KSPINLQNKKKRSHQR--KIT 704 (927)
Q Consensus 639 t~--~~--v~~~~~-~~~V~sla~spdg~~l~tgs~D-----g~I~IwDl~~~-~~~~-~~~i~~~~~~~~~h~~--~Vt 704 (927)
++ +. ...... ......+.|+. |..|+..+.. ..|..+++.+. .... .+ .+.. .+.
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li----------~~~~~~~l~ 372 (751)
T 2xe4_A 304 KGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV----------DHSEDVFME 372 (751)
T ss_dssp SCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE----------CCCSSEEEE
T ss_pred CCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE----------CCCCCcEEE
Confidence 75 33 333332 23445555443 5555544433 25777777642 2111 11 2222 345
Q ss_pred EEEEcCCCCcEEEEEECCCcE--EEEEC
Q 002407 705 GFQFAPGSSSEVLVTSADSRI--RVVDG 730 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I--~VwD~ 730 (927)
.+.+. +..++++...++.. .+++.
T Consensus 373 ~~~~~--~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 373 SIAVR--SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence 55554 45566777777764 44553
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.012 Score=67.15 Aligned_cols=204 Identities=11% Similarity=0.064 Sum_probs=112.0
Q ss_pred CEEEEEecCCcEEEEEeCCC-----cEEEEeCCCCcE-EEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE
Q 002407 569 DVLDLSWSKSQHLLSSSMDK-----TVRLWHLSSKTC-LKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~Dg-----tV~lWDl~t~~~-~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~ 642 (927)
....|+|++++.|+.+...+ .+...+...+.. ...+..-.....++++|.++.++++-..++.|+.++..++..
T Consensus 183 ~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 183 QCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp CEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred CccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence 35667777764354444321 122222221111 112223344567888885566555555677899999887766
Q ss_pred -EEec--cCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECC--CCeeeeecccccc--------cccccCCCCCeEEEEE
Q 002407 643 -VDWN--DLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTS--ENKLQQKSPINLQ--------NKKKRSHQRKITGFQF 708 (927)
Q Consensus 643 -v~~~--~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~--~~~~~~~~~i~~~--------~~~~~~h~~~Vtsl~f 708 (927)
.... ........++|+|++++|+++. ..+.|+.+++. ++.+.....+.-. .............+++
T Consensus 263 ~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav 342 (433)
T 4hw6_A 263 TEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIF 342 (433)
T ss_dssp EEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEE
T ss_pred EEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEE
Confidence 2222 1223345799999999655554 56789998865 2322100000000 0000112345678898
Q ss_pred ---------cCCCCcEEEEEECCCcEEEEECCcceEEEEeecC----------------CcceEEEEEe-cCCCEEEEEE
Q 002407 709 ---------APGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRN----------------TNSQISASLT-ANGRYVVSAS 762 (927)
Q Consensus 709 ---------spdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~----------------~~~v~sv~fs-pdg~~Lasgs 762 (927)
.+++. ++++-...+.|+.++....+..+.+... ......++++ ++|.++++=.
T Consensus 343 ~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~ 421 (433)
T 4hw6_A 343 VKNEAYAGEEDEYD-FYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC 421 (433)
T ss_dssp EECGGGTTSSCCEE-EEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred EccccccccCCCCc-EEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC
Confidence 55543 5555567788999985444444433211 1235688999 6676666666
Q ss_pred CCCcEEEEECC
Q 002407 763 EDSYVYVWKYE 773 (927)
Q Consensus 763 ~Dg~I~IWdl~ 773 (927)
..+.|+.++++
T Consensus 422 ~n~rIr~i~~e 432 (433)
T 4hw6_A 422 DNHRVRKIAPE 432 (433)
T ss_dssp GGTEEEEEEEC
T ss_pred CCCEEEEEecC
Confidence 67778887764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0016 Score=78.70 Aligned_cols=203 Identities=12% Similarity=0.078 Sum_probs=109.8
Q ss_pred EEEecCC-cEEEEEeC-CCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEE-CC-----CcEEEEeCCCCc
Q 002407 572 DLSWSKS-QHLLSSSM-DKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGS-LD-----AKVRIWSIPERQ 641 (927)
Q Consensus 572 ~l~~spd-~~L~Sgs~-DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs-~D-----g~I~IWDl~t~~ 641 (927)
.+++..+ ..++.|+. +..+.+||..+.+....-. ....-.++++.+ ++++++.|+ .+ ..+.+||..+.+
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 3455555 45566663 4579999998876554322 222223456666 888999888 44 469999998876
Q ss_pred EEEecc-----CCCcEEEEEECCCCCEEEEEECCC---------eEEEEECCCCeeeeecccccccccccCCCCCeEEEE
Q 002407 642 VVDWND-----LHEMVTAACYTPDGQGALVGSYKG---------SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 642 ~v~~~~-----~~~~V~sla~spdg~~l~tgs~Dg---------~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
-..... ....-....+..++..++.|+.+| .+..||..+......................-.++.
T Consensus 326 W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 326 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 544311 110000112234566666665544 467888887654332110000000000111234455
Q ss_pred EcCCCCcEEEEEECCC-----------cEEEEECCcceEEEEe--e-cCCcceEEEEEecCCCEEEEEECC---------
Q 002407 708 FAPGSSSEVLVTSADS-----------RIRVVDGIDLVHKFKG--F-RNTNSQISASLTANGRYVVSASED--------- 764 (927)
Q Consensus 708 fspdg~~~Llsgs~Dg-----------~I~VwD~~~~~~~~~~--~-~~~~~v~sv~fspdg~~Lasgs~D--------- 764 (927)
|...+..++++|+.++ .|.+||.....-.... . .....-.++++.+++++++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 5443444777777532 5778885443222211 1 111222355677899999999864
Q ss_pred --CcEEEEECCCC
Q 002407 765 --SYVYVWKYEAE 775 (927)
Q Consensus 765 --g~I~IWdl~s~ 775 (927)
..+.+||..+.
T Consensus 486 ~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 486 PVFTPEIYVPEQD 498 (656)
T ss_dssp BCCCCEEEEGGGT
T ss_pred cccceEEEcCCCC
Confidence 45899998764
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.012 Score=63.96 Aligned_cols=178 Identities=9% Similarity=-0.036 Sum_probs=114.1
Q ss_pred CCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC----CcEEEecc-CCCcEEEEEECCCC
Q 002407 587 DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE----RQVVDWND-LHEMVTAACYTPDG 661 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t----~~~v~~~~-~~~~V~sla~spdg 661 (927)
...|+..|+.+.+....+..-..+..++|++.++.++++-...+.|..+++.. ........ .-..+..+++.+.+
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 45689999998877776666667889999983444555555568899999876 22222222 22456788998755
Q ss_pred CEE-EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-CcEEEEECCc-ceEEEE
Q 002407 662 QGA-LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-SRIRVVDGID-LVHKFK 738 (927)
Q Consensus 662 ~~l-~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-g~I~VwD~~~-~~~~~~ 738 (927)
..| ++-...+.|.++++......... .........+++.|.+..++++.... +.|..++... ....+.
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~---------~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~ 159 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTLF---------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEE---------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEEE---------ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE
Confidence 544 44456788999998754332221 12234678999999766455554443 7888888533 222222
Q ss_pred eecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCC
Q 002407 739 GFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEA 774 (927)
Q Consensus 739 ~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s 774 (927)
.........+++++++..|+.+. ..+.|..+++..
T Consensus 160 -~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 160 -TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp -CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 12344567899998877776655 566899999875
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.021 Score=67.71 Aligned_cols=164 Identities=10% Similarity=0.044 Sum_probs=97.6
Q ss_pred CcEEEEeCCCCcEEEEEe---cCC-------ceEEEEEccCCC---CEEEEEECCCcEEEEeCCCCcEEEeccCCC---c
Q 002407 588 KTVRLWHLSSKTCLKIFS---HSD-------YVTCIQFNPVDD---RYFISGSLDAKVRIWSIPERQVVDWNDLHE---M 651 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~---h~~-------~V~~v~fsp~dg---~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~---~ 651 (927)
+.|..+|..+++.+..+. |.. ...-+.....++ ..|+.++.+|.|+++|..+++++....... .
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 589999999999998886 211 111122210155 478889999999999999998874322211 0
Q ss_pred -------------------------------------------EEEEEECCCCCEEEEEE--------------------
Q 002407 652 -------------------------------------------VTAACYTPDGQGALVGS-------------------- 668 (927)
Q Consensus 652 -------------------------------------------V~sla~spdg~~l~tgs-------------------- 668 (927)
...++++|+...+++..
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 01346677655555533
Q ss_pred -------------CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceE
Q 002407 669 -------------YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH 735 (927)
Q Consensus 669 -------------~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~ 735 (927)
.+|.|..||+.+++.+....... ...... +. ..+. ++++++.|+.|+.||..+...
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-----~~~~g~---~~--tagg-lvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-----PLWAGV---LA--TAGN-LVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-----CCCSCC---EE--ETTT-EEEEECTTSEEEEEETTTCCE
T ss_pred eccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-----CCcccc---eE--eCCC-EEEEECCCCcEEEEECCCCCE
Confidence 25789999999998776543211 011111 11 1233 788899999999999765444
Q ss_pred EEEeecCCcc-eEEEEEecCCC-EEEEEE
Q 002407 736 KFKGFRNTNS-QISASLTANGR-YVVSAS 762 (927)
Q Consensus 736 ~~~~~~~~~~-v~sv~fspdg~-~Lasgs 762 (927)
..+....... ..-+.+..+|+ |+++.+
T Consensus 520 lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 520 LWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 4443322211 12255667776 444443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.013 Score=66.92 Aligned_cols=203 Identities=10% Similarity=0.112 Sum_probs=109.9
Q ss_pred CEEEEEecCC-cEEEEEeCC-C----cEEEEeCCCCcEE--EEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC
Q 002407 569 DVLDLSWSKS-QHLLSSSMD-K----TVRLWHLSSKTCL--KIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 569 ~V~~l~~spd-~~L~Sgs~D-g----tV~lWDl~t~~~~--~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~ 640 (927)
....|+|+++ ++|+.+... + .+.+++.. +... ..+........++++|.++.++++-...+.|..++..++
T Consensus 180 ~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~ 258 (430)
T 3tc9_A 180 KVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ 258 (430)
T ss_dssp CEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT
T ss_pred CcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence 4566777777 435554431 1 23333322 2111 223323446778899855666666556788999999877
Q ss_pred cEEEecc--CCCcEEEEEECCCCCEEEEE-ECCCeEEEEECCC--Ceeeeecccccc--cc------cccCCCCCeE-EE
Q 002407 641 QVVDWND--LHEMVTAACYTPDGQGALVG-SYKGSCHLYNTSE--NKLQQKSPINLQ--NK------KKRSHQRKIT-GF 706 (927)
Q Consensus 641 ~~v~~~~--~~~~V~sla~spdg~~l~tg-s~Dg~I~IwDl~~--~~~~~~~~i~~~--~~------~~~~h~~~Vt-sl 706 (927)
....... .......++|+|+|++|++. ...+.|..++... +.+.....+.-. .. .......... .+
T Consensus 259 ~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv 338 (430)
T 3tc9_A 259 ETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGT 338 (430)
T ss_dssp EEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEE
T ss_pred cEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceE
Confidence 6533322 23467899999999955555 4567899987653 222111000000 00 0001112233 45
Q ss_pred EEcC--------CCCcEEEEEECCCcEEEEECCcceEEEEeec--------C--------CcceEEEEEecC-CCEEEEE
Q 002407 707 QFAP--------GSSSEVLVTSADSRIRVVDGIDLVHKFKGFR--------N--------TNSQISASLTAN-GRYVVSA 761 (927)
Q Consensus 707 ~fsp--------dg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~--------~--------~~~v~sv~fspd-g~~Lasg 761 (927)
+..+ ++ .++++-...+.|+.++....+..+.+.. . -.....++++++ +.++++-
T Consensus 339 ~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD 417 (430)
T 3tc9_A 339 FVKNPAYKGSSDEY-DFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGD 417 (430)
T ss_dssp EEECGGGTTSSCCE-EEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEE
T ss_pred EEccccccccCCCC-eEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEE
Confidence 5532 23 2444445678899998543333333320 0 124678999995 5555555
Q ss_pred ECCCcEEEEECC
Q 002407 762 SEDSYVYVWKYE 773 (927)
Q Consensus 762 s~Dg~I~IWdl~ 773 (927)
.....|+.++++
T Consensus 418 ~~n~rIr~i~~e 429 (430)
T 3tc9_A 418 RENRRIRKIGYE 429 (430)
T ss_dssp GGGTEEEEEEEC
T ss_pred CCCCeEEEEccC
Confidence 566778887764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.011 Score=71.08 Aligned_cols=257 Identities=9% Similarity=0.065 Sum_probs=135.5
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecCcCcccceeecccccCccccEEEEc
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQEDGHLNMLLLAN 510 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~-DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~ 510 (927)
.+.+|+..+++...+.... ..+.....++++.++|++++.||. +..+.+||..+.+..... . .........+.
T Consensus 220 ~~~~yd~~t~~w~~~~~~~--~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-~---~~~~R~~~s~~ 293 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTV--TKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP-D---MQVARGYQSSA 293 (656)
T ss_dssp EEEEECTTTCCBCCCEEEE--CSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC-C---CSSCCSSCEEE
T ss_pred EEEEEeCCCCcEEeCcccC--CCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECC-C---CCccccccceE
Confidence 6899999888776553211 223333445788899999999984 568999998876432211 0 01111112334
Q ss_pred cCCCCCeeccccc-CCceeeecccccccccccccCcccccceEeecCCCceEEE-----------c-----cCCCCEEEE
Q 002407 511 GSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-----------Q-----GHLDDVLDL 573 (927)
Q Consensus 511 ~spd~~~la~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l-----------~-----gH~~~V~~l 573 (927)
..+++.+++.++. ++.... ... .+|+.....-..+ . .+.+.+..+
T Consensus 294 ~~~dg~iyv~GG~~~~~~~~----~~~--------------e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~ 355 (656)
T 1k3i_A 294 TMSDGRVFTIGGSWSGGVFE----KNG--------------EVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLF 355 (656)
T ss_dssp ECTTSCEEEECCCCCSSSCC----CCE--------------EEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEE
T ss_pred EecCCeEEEEeCcccCCccc----ccc--------------eEeCCCCCcceeCCCccccccccccccceeecCCceEEE
Confidence 4457777777652 211000 000 0111111100000 0 011111111
Q ss_pred EecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cC---------CceEEEEEccCCCCEEEEEECCC-----------cE
Q 002407 574 SWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HS---------DYVTCIQFNPVDDRYFISGSLDA-----------KV 632 (927)
Q Consensus 574 ~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~---------~~V~~v~fsp~dg~~L~sgs~Dg-----------~I 632 (927)
... ++.++.......+..||..+........ +. ..-.++.|...++++++.|+.++ .|
T Consensus 356 Gg~-~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v 434 (656)
T 1k3i_A 356 GWK-KGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHII 434 (656)
T ss_dssp ECG-GGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEE
T ss_pred ECC-CCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEE
Confidence 111 1222222234567889998877554433 11 12345555444788888887542 67
Q ss_pred EEEeCCCCcEEEec--cCC--CcEEEEEECCCCCEEEEEECC-----------CeEEEEECCCCeeeeeccccccccccc
Q 002407 633 RIWSIPERQVVDWN--DLH--EMVTAACYTPDGQGALVGSYK-----------GSCHLYNTSENKLQQKSPINLQNKKKR 697 (927)
Q Consensus 633 ~IWDl~t~~~v~~~--~~~--~~V~sla~spdg~~l~tgs~D-----------g~I~IwDl~~~~~~~~~~i~~~~~~~~ 697 (927)
.+||..+.+-.... ..+ ..-.+++..|+++.+++|+.+ ..+.+||..+.+....... .
T Consensus 435 ~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~-------~ 507 (656)
T 1k3i_A 435 TLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN-------S 507 (656)
T ss_dssp ECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC-------S
T ss_pred EcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCC-------C
Confidence 88888877655443 222 223455677899999999864 4689999988765432211 1
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 698 SHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 698 ~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
.......+..+.|++. ++++|+.
T Consensus 508 ~~R~~hs~a~ll~dg~-v~v~GG~ 530 (656)
T 1k3i_A 508 IVRVYHSISLLLPDGR-VFNGGGG 530 (656)
T ss_dssp SCCCTTEEEEECTTSC-EEEEECC
T ss_pred CccccccHhhcCCCcE-EEecCCC
Confidence 1112223445668776 7777764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.53 E-value=0.048 Score=61.46 Aligned_cols=187 Identities=9% Similarity=-0.058 Sum_probs=119.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC----cEEEecc-CCCcEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER----QVVDWND-LHEMVT 653 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~----~~v~~~~-~~~~V~ 653 (927)
.+|+.+. ...|+..++........+.....+..|+|++.++.++++-...+.|+.+++... ....... .-..+.
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 4444443 468899999887776666667788999999844544555455678999988752 2222222 345678
Q ss_pred EEEECCC-CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC-CCcEEEEECC
Q 002407 654 AACYTPD-GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA-DSRIRVVDGI 731 (927)
Q Consensus 654 sla~spd-g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~-Dg~I~VwD~~ 731 (927)
.+++.+. +.++++-...+.|.+.++......... .........|++.|.+..++++-.. .+.|...+..
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~---------~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d 233 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF---------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 233 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE---------ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE---------eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence 8999984 444555556788999998765433322 1233457899999976644444423 4788888854
Q ss_pred cceEEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCC
Q 002407 732 DLVHKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAE 775 (927)
Q Consensus 732 ~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~ 775 (927)
.................+++++++..|+.+. ..+.|..++++..
T Consensus 234 G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 234 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 278 (400)
T ss_dssp SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence 3222222222335678899998877777665 4567999998754
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0076 Score=71.47 Aligned_cols=152 Identities=6% Similarity=-0.067 Sum_probs=93.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCC-----ceEE-EEEccCCCCEEEEEEC------CCcEEEEeCCCCcEEEe
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSD-----YVTC-IQFNPVDDRYFISGSL------DAKVRIWSIPERQVVDW 645 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~-----~V~~-v~fsp~dg~~L~sgs~------Dg~I~IWDl~t~~~v~~ 645 (927)
++.|+.++.|+.|..+|..+++.+..+.... .+.+ .... ++ .+++++. ++.|..+|..+++++-.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE--CC-EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 4678888899999999999999988776322 2221 1111 34 4555554 78999999999988753
Q ss_pred ccCCCcE---------------------------------------EEEEECCCCCEEEEEECC----------------
Q 002407 646 NDLHEMV---------------------------------------TAACYTPDGQGALVGSYK---------------- 670 (927)
Q Consensus 646 ~~~~~~V---------------------------------------~sla~spdg~~l~tgs~D---------------- 670 (927)
....... ..+++.++...++++..+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 3222110 235677766677776642
Q ss_pred CeEEEEECCCCeeeeecccccccc-cccCCCCCeEEEEEcCCCC--cEEEEEECCCcEEEEECCcc
Q 002407 671 GSCHLYNTSENKLQQKSPINLQNK-KKRSHQRKITGFQFAPGSS--SEVLVTSADSRIRVVDGIDL 733 (927)
Q Consensus 671 g~I~IwDl~~~~~~~~~~i~~~~~-~~~~h~~~Vtsl~fspdg~--~~Llsgs~Dg~I~VwD~~~~ 733 (927)
+.|..+|..+++.+..++...... .......++. +....++. .+++.++.+|.++++|..+.
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 336 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENG 336 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTC
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCC
Confidence 359999999999877655321000 0001112222 22223453 35677888999999995443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.06 Score=56.75 Aligned_cols=208 Identities=10% Similarity=0.113 Sum_probs=122.4
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLAS-AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaS-gs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
.+.|.+=.+.+..|+|+|++..|++ ...++.|...|.. ++....+.
T Consensus 19 ~~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-------------------------------- 65 (255)
T 3qqz_A 19 GKEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-------------------------------- 65 (255)
T ss_dssp EEECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE--------------------------------
T ss_pred ceECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe--------------------------------
Confidence 3566777778999999998765554 6667777777765 33222210
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEE-eCCCcEEEEeCCCCcE---EEE
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSS-SMDKTVRLWHLSSKTC---LKI 603 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sg-s~DgtV~lWDl~t~~~---~~~ 603 (927)
+.+ ....-.|++.+++.++.+ -.++.+.++++..... +..
T Consensus 66 -----------------------------------l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~ 109 (255)
T 3qqz_A 66 -----------------------------------LDF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKK 109 (255)
T ss_dssp -----------------------------------CSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEE
T ss_pred -----------------------------------cCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeee
Confidence 011 134566777777555444 3566788887765432 222
Q ss_pred Ee-------cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC---C---cEEEe-----ccCCCcEEEEEECCCCC-EE
Q 002407 604 FS-------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE---R---QVVDW-----NDLHEMVTAACYTPDGQ-GA 664 (927)
Q Consensus 604 ~~-------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t---~---~~v~~-----~~~~~~V~sla~spdg~-~l 664 (927)
.. .......|+|+| .++.|+++.......||.+.. . .+... ...-..+..++++|... ++
T Consensus 110 ~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~ll 188 (255)
T 3qqz_A 110 IKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLL 188 (255)
T ss_dssp EECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEE
T ss_pred eccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEE
Confidence 21 234468999999 666666666555555555431 1 11111 01123578999999554 55
Q ss_pred EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 665 LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 665 ~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
+.......|.++|... +.+..+.+..............-+|+|.++|. |.+.++-..+++|.
T Consensus 189 iLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~--lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 189 VLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN--IYIVSEPNRFYRFT 250 (255)
T ss_dssp EEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC--EEEEETTTEEEEEE
T ss_pred EEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCC--EEEEcCCceEEEEE
Confidence 5555667789999764 45555443211111112234678999999985 55557777777765
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0071 Score=69.02 Aligned_cols=151 Identities=15% Similarity=0.110 Sum_probs=101.1
Q ss_pred CEEEEEecC-C-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECC-C----cEEEEeCCCCc
Q 002407 569 DVLDLSWSK-S-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD-A----KVRIWSIPERQ 641 (927)
Q Consensus 569 ~V~~l~~sp-d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D-g----~I~IWDl~t~~ 641 (927)
....|+++| + +.|+.+...+.|+.+|+..+..............|+|++ ++++|+.+... + .+.+++. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 456789997 3 777777666889999998877666655666789999999 88866655542 2 2333443 222
Q ss_pred EE--EeccCCCcEEEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEE
Q 002407 642 VV--DWNDLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (927)
Q Consensus 642 ~v--~~~~~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Lls 718 (927)
.. ..+........++++| +|.++++-...+.|..|+..++....... .........++|+|++..++++
T Consensus 216 ~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~--------~~~~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 216 FKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT--------IQDSGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp SCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE--------CSSSSCCEEEEECTTSSEEEEE
T ss_pred eeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE--------cCCCCcceeEEEcCCCCEEEEE
Confidence 11 1111223456788999 67666666677899999998776532211 1222457789999999855666
Q ss_pred EECCCcEEEEE
Q 002407 719 TSADSRIRVVD 729 (927)
Q Consensus 719 gs~Dg~I~VwD 729 (927)
-...+.|.+++
T Consensus 288 d~~~~~I~~~~ 298 (430)
T 3tc9_A 288 VVNQHYILRSD 298 (430)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCEEEEEe
Confidence 66788999987
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.021 Score=67.93 Aligned_cols=150 Identities=11% Similarity=0.032 Sum_probs=93.0
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEecCC-----ceEE-EEEccCCCCEEEEEE------CCCcEEEEeCCCCcEEEecc
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHSD-----YVTC-IQFNPVDDRYFISGS------LDAKVRIWSIPERQVVDWND 647 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~-----~V~~-v~fsp~dg~~L~sgs------~Dg~I~IWDl~t~~~v~~~~ 647 (927)
+|+.++.|+.|.-+|..+++.+..+.... .+++ ..+. ++ .+++++ .++.|+.+|..+++++-...
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 38888899999999999999987765222 2221 1121 34 455554 47999999999999874332
Q ss_pred CCCcE---------------------------------------EEEEECCCCCEEEEEECC----------------Ce
Q 002407 648 LHEMV---------------------------------------TAACYTPDGQGALVGSYK----------------GS 672 (927)
Q Consensus 648 ~~~~V---------------------------------------~sla~spdg~~l~tgs~D----------------g~ 672 (927)
..... ..+++.++...+++++.+ +.
T Consensus 200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~s 279 (599)
T 1w6s_A 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT 279 (599)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccce
Confidence 22111 135666777788887765 37
Q ss_pred EEEEECCCCeeeeecccccccc-cccCCCCCeEEEEEc-CCCC--cEEEEEECCCcEEEEECCcc
Q 002407 673 CHLYNTSENKLQQKSPINLQNK-KKRSHQRKITGFQFA-PGSS--SEVLVTSADSRIRVVDGIDL 733 (927)
Q Consensus 673 I~IwDl~~~~~~~~~~i~~~~~-~~~~h~~~Vtsl~fs-pdg~--~~Llsgs~Dg~I~VwD~~~~ 733 (927)
|..+|..+++....++...... .......++. +... .++. ..++.++.+|.++++|..+.
T Consensus 280 v~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 343 (599)
T 1w6s_A 280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDG 343 (599)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTC
T ss_pred EEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCC
Confidence 9999999999887765321000 0000112222 2222 3453 35777889999999995443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0057 Score=75.00 Aligned_cols=192 Identities=14% Similarity=0.097 Sum_probs=109.4
Q ss_pred CEEEEEec-CCc-EEEEE-eCCC----cEEEEeCCCC-cEEEEEecCCceEEEEEccCCCCEEEEEECC-----CcEEEE
Q 002407 569 DVLDLSWS-KSQ-HLLSS-SMDK----TVRLWHLSSK-TCLKIFSHSDYVTCIQFNPVDDRYFISGSLD-----AKVRIW 635 (927)
Q Consensus 569 ~V~~l~~s-pd~-~L~Sg-s~Dg----tV~lWDl~t~-~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D-----g~I~IW 635 (927)
.+....|+ ||+ +|+.+ ..+| +|+++|+.++ +.+.. ........+.|+| +++.|+....+ ..|.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGP-DHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECS-STTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEec-CCCEEEEEEECCCCCCCEEEEE
Confidence 57789999 994 45533 3333 5999999998 63211 0111235688999 88877776665 258888
Q ss_pred eCCCCc----EEEeccCCCcEEEEEECCCCCEEEEEEC---CCeEEEEECCCCee-e--eecccccccccccCCCCCeEE
Q 002407 636 SIPERQ----VVDWNDLHEMVTAACYTPDGQGALVGSY---KGSCHLYNTSENKL-Q--QKSPINLQNKKKRSHQRKITG 705 (927)
Q Consensus 636 Dl~t~~----~v~~~~~~~~V~sla~spdg~~l~tgs~---Dg~I~IwDl~~~~~-~--~~~~i~~~~~~~~~h~~~Vts 705 (927)
++.+++ ++...........+.|+|||++|+.... ...|+++|+.++.. . ..+. .........
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--------~~~~~~~~s 324 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR--------PREKGVRYD 324 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS--------CCCTTCCEE
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee--------cCCCCceEE
Confidence 887753 2222223345678899999999887663 34588899877521 1 1110 122344555
Q ss_pred EEEcCCCCcEEEEEECC----CcEEEEECCc--ceEE-EEeecCCcceEEEEEecCCCEEEEEECCCc--EEEEEC
Q 002407 706 FQFAPGSSSEVLVTSAD----SRIRVVDGID--LVHK-FKGFRNTNSQISASLTANGRYVVSASEDSY--VYVWKY 772 (927)
Q Consensus 706 l~fspdg~~~Llsgs~D----g~I~VwD~~~--~~~~-~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~--I~IWdl 772 (927)
+.|+. +..+++.+..+ ..|.++|... .... +..+.....+..+.+. .+.++++...++. |+++++
T Consensus 325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 55544 45455555443 3566677542 1122 2222222234455554 3345566667776 455554
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0093 Score=68.14 Aligned_cols=196 Identities=8% Similarity=0.026 Sum_probs=121.1
Q ss_pred CEEEEEecCC---cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECC---Cc-EEEEeCCCCc
Q 002407 569 DVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD---AK-VRIWSIPERQ 641 (927)
Q Consensus 569 ~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D---g~-I~IWDl~t~~ 641 (927)
....|+|.++ +.|+.+...+.|+.+|+.+++.............|+|++ +++++++.... .. +...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCCe
Confidence 3567899983 777777666899999998887776665566789999999 88854444321 11 3333322211
Q ss_pred E-EEeccCCCcEEEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 642 V-VDWNDLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 642 ~-v~~~~~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
. ......-.....++++| +|.++++-..++.|+.+|..++.....+.. .........++|+|++..++++-
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~-------~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM-------MDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE-------CSCCSSCEEEEECTTSSEEEEEE
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec-------cCCCCCcccEEEeCCCCEEEEEe
Confidence 1 01111223456688999 666666655678899999987765222110 11122335799999987566666
Q ss_pred ECCCcEEEEECC----cc--eEEEEee-c------------CCcceEEEEE---------ecCCCEEEEEECCCcEEEEE
Q 002407 720 SADSRIRVVDGI----DL--VHKFKGF-R------------NTNSQISASL---------TANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 720 s~Dg~I~VwD~~----~~--~~~~~~~-~------------~~~~v~sv~f---------spdg~~Lasgs~Dg~I~IWd 771 (927)
...+.|+.++.. .+ ...+.+. . .......+++ .++|.++++-...+.|+.++
T Consensus 292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 677899998732 11 1222221 0 1123456888 67777777666677888887
Q ss_pred C
Q 002407 772 Y 772 (927)
Q Consensus 772 l 772 (927)
.
T Consensus 372 ~ 372 (433)
T 4hw6_A 372 P 372 (433)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0063 Score=72.34 Aligned_cols=85 Identities=14% Similarity=0.050 Sum_probs=54.1
Q ss_pred CCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE
Q 002407 629 DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 629 Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
+|.|..||+.+++.+-.......+..-.+...+..+++++.|+.++.||.++++.+..+.+. ......-+.|
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~--------~g~~a~P~~y 536 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG--------SGIVSPPITW 536 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS--------SCCCSCCEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC--------CCcccCceEE
Confidence 57899999999988754433322222122224667888999999999999999998876531 1111122455
Q ss_pred cCCCCcEEEEEEC
Q 002407 709 APGSSSEVLVTSA 721 (927)
Q Consensus 709 spdg~~~Llsgs~ 721 (927)
..+|..++++.+.
T Consensus 537 ~~~G~qYv~~~~G 549 (582)
T 1flg_A 537 EQDGEQYLGVTVG 549 (582)
T ss_dssp EETTEEEEEEEEC
T ss_pred EECCEEEEEEEcc
Confidence 5667655555443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.34 E-value=0.058 Score=58.73 Aligned_cols=199 Identities=5% Similarity=-0.054 Sum_probs=127.2
Q ss_pred CCEEEEEecCC-cEEE-EEeCCCcEEEEeCCCCcEE-EEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE
Q 002407 568 DDVLDLSWSKS-QHLL-SSSMDKTVRLWHLSSKTCL-KIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~-Sgs~DgtV~lWDl~t~~~~-~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v 643 (927)
..+..|+|.+. +.|+ +-...+.|..+++...... ..+. .-.....+++.+..++++++-...+.|.++++......
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 35678999875 5554 4456788999998876421 2222 23456789998745666666666788999998765433
Q ss_pred Eec-cCCCcEEEEEECCCCCEEEEEEC--CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 644 DWN-DLHEMVTAACYTPDGQGALVGSY--KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 644 ~~~-~~~~~V~sla~spdg~~l~tgs~--Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
... ..-.....+++.|.+..|+.... .+.|..+++......... .......+.+++++++..++++-+
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~---------~~~l~~Pnglavd~~~~~lY~aD~ 185 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII---------NSEIYWPNGLTLDYEEQKLYWADA 185 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE---------CSSCSCEEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE---------ECCCCCccEEEEeccCCEEEEEEC
Confidence 332 34457899999997666666653 578888888653322111 122345789999998776666667
Q ss_pred CCCcEEEEECCc-ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 721 ADSRIRVVDGID-LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 721 ~Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
..+.|..+|... ....+.. ........+++.. +.++++-...+.|..++..++..
T Consensus 186 ~~~~I~~~d~dG~~~~~~~~-~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 186 KLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp TTTEEEEEETTSCSCEEEEC-SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCEEEEEcCCCCceEEEec-CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 788999998532 2222221 1234456677753 34555555677899998876654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.32 E-value=0.057 Score=58.83 Aligned_cols=179 Identities=7% Similarity=-0.067 Sum_probs=111.1
Q ss_pred CCcEEEEeCCCCc--EEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE--EEeccCCCcEEEEEECCCCC
Q 002407 587 DKTVRLWHLSSKT--CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV--VDWNDLHEMVTAACYTPDGQ 662 (927)
Q Consensus 587 DgtV~lWDl~t~~--~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~--v~~~~~~~~V~sla~spdg~ 662 (927)
...|+.+++.... ....+.....+..|+|.+.++.++++-...+.|..+++..... ......-..+..+++.+.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 4678899988763 2333333345778999984555555655677899999876532 11112223566788887544
Q ss_pred -EEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEECCc-ceEEEEe
Q 002407 663 -GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS-ADSRIRVVDGID-LVHKFKG 739 (927)
Q Consensus 663 -~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs-~Dg~I~VwD~~~-~~~~~~~ 739 (927)
++++-...+.|.++++......... .........+++.|.+..++++-. ..+.|..++... ....+.
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~---------~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~- 161 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLF---------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII- 161 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEE---------CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE-
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEE---------eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE-
Confidence 4455556678999998764322211 133456789999987664444432 357888888532 222221
Q ss_pred ecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCC
Q 002407 740 FRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAE 775 (927)
Q Consensus 740 ~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~ 775 (927)
.........++|++++..|+.+. ..+.|+.+++...
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~ 198 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 198 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence 12234567899999777666654 5677999998753
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.099 Score=64.15 Aligned_cols=207 Identities=9% Similarity=-0.009 Sum_probs=127.7
Q ss_pred EEEccCCCCEEEEEecCC-cEEE-EEeCCCcEEEEeCCCC----cEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEE
Q 002407 561 CSFQGHLDDVLDLSWSKS-QHLL-SSSMDKTVRLWHLSSK----TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVR 633 (927)
Q Consensus 561 ~~l~gH~~~V~~l~~spd-~~L~-Sgs~DgtV~lWDl~t~----~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~ 633 (927)
..+......+..|+|.+. +.|+ +-...+.|+.+++... .....+. .-.....|++.+..++++++-...+.|.
T Consensus 417 ~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~ 496 (791)
T 3m0c_C 417 TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 496 (791)
T ss_dssp EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEE
Confidence 334444567789999874 5554 4455678999998753 2233333 3456778999884556666666778899
Q ss_pred EEeCCCCcEEEecc-CCCcEEEEEECCCCCEEEEEEC--CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 634 IWSIPERQVVDWND-LHEMVTAACYTPDGQGALVGSY--KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 634 IWDl~t~~~v~~~~-~~~~V~sla~spdg~~l~tgs~--Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
+.++.......+.. .-.....|++.|.+.+|+.... .+.|...++......... .......+.|++.+
T Consensus 497 v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv---------~~~l~~P~GLavD~ 567 (791)
T 3m0c_C 497 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---------TENIQWPNGITLDL 567 (791)
T ss_dssp EEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE---------CSSCSCEEEEEEET
T ss_pred EEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE---------eCCCCCceEEEEec
Confidence 99998765544433 3356899999998666666543 267999998765443222 13345688999998
Q ss_pred CCCcEEEEEECCCcEEEEECCc--ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 711 GSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
.+..++++-.....|..++... ....+...........|++.. ++++++-...+.|...+..++..
T Consensus 568 ~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 568 LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSD 635 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCC
T ss_pred CCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcc
Confidence 7775556556678899998532 222222212223345666633 23344444567788887666544
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.045 Score=60.15 Aligned_cols=182 Identities=13% Similarity=0.234 Sum_probs=116.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccC---CCC---EEEEEEC---CCcEEEEeC--CCCcEEEecc
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPV---DDR---YFISGSL---DAKVRIWSI--PERQVVDWND 647 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~---dg~---~L~sgs~---Dg~I~IWDl--~t~~~v~~~~ 647 (927)
.+++.....+-|.+||+ +++.++.+.. ..++.+..-|. .++ ++++... +++|.+|++ .++++.....
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 56777788889999999 7888887754 56777776650 122 2333333 478999977 4555443322
Q ss_pred ------CC-CcEEEEEE--CCC-CC-EEEEEECCCeEEEEECC---CC----eeeeecccccccccccCCCCCeEEEEEc
Q 002407 648 ------LH-EMVTAACY--TPD-GQ-GALVGSYKGSCHLYNTS---EN----KLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 648 ------~~-~~V~sla~--spd-g~-~l~tgs~Dg~I~IwDl~---~~----~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
.. ..+..+|+ +|. ++ ++++...+|.+..|++. .+ +++..+ .....+-.++..
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f----------~lgsq~EgcvvD 188 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF----------KMNSQTEGMAAD 188 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE----------ECSSCEEEEEEE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe----------cCCCCcceEEEc
Confidence 11 45666777 774 44 68888889999999883 23 333332 234568888888
Q ss_pred CCCCcEEEEEECCCcEEEEECC-----c--ceEEEEeecCCcceEEEEE--ecCCC-EEEEEE-CCCcEEEEECC
Q 002407 710 PGSSSEVLVTSADSRIRVVDGI-----D--LVHKFKGFRNTNSQISASL--TANGR-YVVSAS-EDSYVYVWKYE 773 (927)
Q Consensus 710 pdg~~~Llsgs~Dg~I~VwD~~-----~--~~~~~~~~~~~~~v~sv~f--spdg~-~Lasgs-~Dg~I~IWdl~ 773 (927)
+... .|+++-++.-|..|+.. . .+..+........+..+++ .++++ ||++++ .+..+.|||..
T Consensus 189 d~~g-~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 189 DEYG-RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTTT-EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCCC-eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 8665 79999998777777732 1 2222211111235667777 56666 666666 56789999996
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.097 Score=60.47 Aligned_cols=209 Identities=8% Similarity=0.030 Sum_probs=116.5
Q ss_pred CEEEEEe-------cCC-cEEEEEeCCC-------cEEEEeCCC-CcEE-----EEEecCCceEEEEEccCCCCEEEEEE
Q 002407 569 DVLDLSW-------SKS-QHLLSSSMDK-------TVRLWHLSS-KTCL-----KIFSHSDYVTCIQFNPVDDRYFISGS 627 (927)
Q Consensus 569 ~V~~l~~-------spd-~~L~Sgs~Dg-------tV~lWDl~t-~~~~-----~~~~h~~~V~~v~fsp~dg~~L~sgs 627 (927)
....|+| +++ ..|+.+...+ .|.+++... +... ..+.--.....++++|.++.++++-.
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~ 266 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSY 266 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEET
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEEC
Confidence 3566777 776 4355555443 255665333 1111 12221123457788995566666666
Q ss_pred CCCcEEEEeCC-------CCcE--------------EEeccCCCcEEEEEECCCCCEEEEE-ECCCeEEEEECC--CCee
Q 002407 628 LDAKVRIWSIP-------ERQV--------------VDWNDLHEMVTAACYTPDGQGALVG-SYKGSCHLYNTS--ENKL 683 (927)
Q Consensus 628 ~Dg~I~IWDl~-------t~~~--------------v~~~~~~~~V~sla~spdg~~l~tg-s~Dg~I~IwDl~--~~~~ 683 (927)
.++.|..+|+. ++.+ +...........++|+|+|++|.++ +..+.|+.++.. .+.+
T Consensus 267 ~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~ 346 (496)
T 3kya_A 267 EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEF 346 (496)
T ss_dssp TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred CCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCccee
Confidence 77889999987 5543 1122233457899999999965555 456788886653 3322
Q ss_pred eeecccccc--c------ccccCCCCCeE-EEEEc-------CCCCcEEEEEECCCcEEEEECCcceEEEEeecC-----
Q 002407 684 QQKSPINLQ--N------KKKRSHQRKIT-GFQFA-------PGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRN----- 742 (927)
Q Consensus 684 ~~~~~i~~~--~------~~~~~h~~~Vt-sl~fs-------pdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~----- 742 (927)
.....+.-. . ........... .++.. +++ .++++-.....|+.++....+..+.+...
T Consensus 347 ~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~ 425 (496)
T 3kya_A 347 ITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLA 425 (496)
T ss_dssp CCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHH
T ss_pred cccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeCCCCEEEEeccccccccc
Confidence 100000000 0 00011223345 44454 333 35666677889999995555555544311
Q ss_pred -----------------CcceEEEEEecC-CCEEEEEECCCcEEEEECCCCCCc
Q 002407 743 -----------------TNSQISASLTAN-GRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 743 -----------------~~~v~sv~fspd-g~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
-.....++++++ |.++++=.....|+.++++.....
T Consensus 426 ~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 426 DGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp HSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 123567899997 666666666778999998775443
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.18 E-value=1.1 Score=57.36 Aligned_cols=323 Identities=12% Similarity=0.036 Sum_probs=152.5
Q ss_pred eeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCC------CCEEEEEeC-CCcEEEEe
Q 002407 412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD------GRYLASAGE-DCVIHVWQ 484 (927)
Q Consensus 412 ~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpd------G~~LaSgs~-DgtVrVWd 484 (927)
...++..+.+ ++++ . ++.+..+....+++... ...++ ...|.|+++.|. ++++|.|.. |++|+|++
T Consensus 516 I~~As~n~~~-vvva-~-g~~l~~fel~~~~L~~~-~~~~l---~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~s 588 (1158)
T 3ei3_A 516 ISVASCNSSQ-VVVA-V-GRALYYLQIHPQELRQI-SHTEM---EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILK 588 (1158)
T ss_dssp CCEEEECSSE-EEEE-E-TTEEEEEEEETTEEEEE-EEEEC---SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCE-EEEE-E-CCEEEEEEeeCCceeee-cccCC---CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEE
Confidence 4444444443 3333 2 35565665444433322 11222 557999999863 369999996 99999999
Q ss_pred cCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEc
Q 002407 485 VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ 564 (927)
Q Consensus 485 v~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~ 564 (927)
+.+.+.+...... .......+..+.+ ....++..+-.++.+........ .. ..... + ..+-
T Consensus 589 L~~l~~~~~~~L~-~~~~p~si~l~~~-~~~~~L~igl~dG~l~~~~~d~~----tg---~l~d~-r---------~~~L 649 (1158)
T 3ei3_A 589 LPSFELLHKEMLG-GEIIPRSILMTTF-ESSHYLLCALGDGALFYFGLNIE----TG---LLSDR-K---------KVTL 649 (1158)
T ss_dssp TTTCCEEEEEECC-SSCCEEEEEEEEE-TTEEEEEEEETTSEEEEEEECTT----TC---CEEEE-E---------EEEC
T ss_pred CCCCCeEEEEECC-CCCCCcEEEEEEe-CCCcEEEEEeCCCeEEEEEEcCC----CC---ccccc-e---------eEEc
Confidence 9865444322111 0112222333333 12233444444444322211100 00 00000 0 0111
Q ss_pred cCCCCEEEEEecCC-c-EEEEEeCCCcEEEEeCCCCcEEEEEecCCce-EEEEEccCC-CCEEEEEECCCcEEEEeCCCC
Q 002407 565 GHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYV-TCIQFNPVD-DRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 565 gH~~~V~~l~~spd-~-~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V-~~v~fsp~d-g~~L~sgs~Dg~I~IWDl~t~ 640 (927)
| ..++.-..+... + .+++.+ +....++.-. ++....--.-..+ ....|+... .+-++.. .++.++|..+...
T Consensus 650 G-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~ 725 (1158)
T 3ei3_A 650 G-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEI 725 (1158)
T ss_dssp C-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCS
T ss_pred C-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEE-cCCceEEEEeccc
Confidence 2 122222222211 1 222222 3333333322 2221110011223 233453311 2334433 3556888877543
Q ss_pred c--EEEeccCCCcEEEEEECCCCCEEEEEECC------------------------------------------------
Q 002407 641 Q--VVDWNDLHEMVTAACYTPDGQGALVGSYK------------------------------------------------ 670 (927)
Q Consensus 641 ~--~v~~~~~~~~V~sla~spdg~~l~tgs~D------------------------------------------------ 670 (927)
+ .+........+..++++|..+.++++..+
T Consensus 726 ~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 805 (1158)
T 3ei3_A 726 QKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVE 805 (1158)
T ss_dssp SSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEE
T ss_pred CCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCcee
Confidence 2 33455667889999999988876665422
Q ss_pred -CeEEEEECCCCeeeeecccccccccccCCCCCeEEEE---EcCCCCcEEEEEE----------CCCcEEEEECC--cce
Q 002407 671 -GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ---FAPGSSSEVLVTS----------ADSRIRVVDGI--DLV 734 (927)
Q Consensus 671 -g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~---fspdg~~~Llsgs----------~Dg~I~VwD~~--~~~ 734 (927)
+.|+++|..+.+.+..+.+ .....+.+++ |..+...+|++|. ..|.|++|+.. ++.
T Consensus 806 ~s~i~lidp~t~~~i~~~~l--------~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~ 877 (1158)
T 3ei3_A 806 VHNLLIIDQHTFEVLHAHQF--------LQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ 877 (1158)
T ss_dssp EEEEEEEETTTCCEEEEEEC--------CTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEE
T ss_pred eEEEEEEeCCCCeEEEEEeC--------CCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEE
Confidence 1355566555554444332 2233445544 4434345788876 34789999853 222
Q ss_pred EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 735 HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 735 ~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
... .....+.+.+++-- +|+ |++|- ...|+||++...+
T Consensus 878 lv~-~~~v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 878 TVA-EKEVKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTEK 915 (1158)
T ss_dssp EEE-EEEESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTTS
T ss_pred EEE-EEEcCCcCEEEeee-CCE-EEEEc-CCEEEEEECCCCc
Confidence 222 22335667776532 454 44443 4789999997654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.044 Score=59.76 Aligned_cols=202 Identities=8% Similarity=0.096 Sum_probs=126.1
Q ss_pred cCCCCEEEEEecCC-cEEEEEe-CCCcEEEEeCCCCcEEEE-Eec-------CCceEEEEE---ccCCCCEEEEEEC---
Q 002407 565 GHLDDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKI-FSH-------SDYVTCIQF---NPVDDRYFISGSL--- 628 (927)
Q Consensus 565 gH~~~V~~l~~spd-~~L~Sgs-~DgtV~lWDl~t~~~~~~-~~h-------~~~V~~v~f---sp~dg~~L~sgs~--- 628 (927)
....--.++.|++. +.|+.++ ..++|..|+...+....+ +.. ...+..|.| .| +++++++...
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~a 88 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKS 88 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccc
Confidence 33344457889875 7777777 689999999986654444 222 114689999 68 6777775431
Q ss_pred ----------CCcEEEEeCC---CCcEEEeccC--------------CCcEEEEEECCCCCEEEEEECC-CeEEEEECCC
Q 002407 629 ----------DAKVRIWSIP---ERQVVDWNDL--------------HEMVTAACYTPDGQGALVGSYK-GSCHLYNTSE 680 (927)
Q Consensus 629 ----------Dg~I~IWDl~---t~~~v~~~~~--------------~~~V~sla~spdg~~l~tgs~D-g~I~IwDl~~ 680 (927)
+..|..||+. +++.+..... ......++..++|+..++++.. +.|..++...
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 5779999999 7766543332 1258899999999999999988 8888888775
Q ss_pred CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceE-EEEee--c---CCcceEE-EEEec
Q 002407 681 NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH-KFKGF--R---NTNSQIS-ASLTA 753 (927)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~-~~~~~--~---~~~~v~s-v~fsp 753 (927)
....... .... ........+.|+++|++. .|++....+.|..+|...... .+... . ....... +..-.
T Consensus 169 ~~~~~~~-~~~~---~~~~~~G~nGIv~~pdg~-~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~ 243 (334)
T 2p9w_A 169 KTVSTFA-WESG---NGGQRPGYSGITFDPHSN-KLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPV 243 (334)
T ss_dssp CCEEEEE-ECCC---CSSSCCSCSEEEEETTTT-EEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEE
T ss_pred CEEeeee-ecCC---CcccccCcceEEEeCCCC-EEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccccccc
Confidence 5332211 1110 112234578999999987 555554599999999664332 11111 0 1111223 23335
Q ss_pred CCCE-EEEEECCCcEEEEEC
Q 002407 754 NGRY-VVSASEDSYVYVWKY 772 (927)
Q Consensus 754 dg~~-Lasgs~Dg~I~IWdl 772 (927)
+|+. |++....+.+.+.+-
T Consensus 244 ~G~vllV~~~~~~~~~l~S~ 263 (334)
T 2p9w_A 244 GNESVLVGARAPYAISFRSW 263 (334)
T ss_dssp TTEEEEEEEETTEEEEEECS
T ss_pred CCEEEEEEcCCCCEEEEECC
Confidence 7777 455555555545443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.13 Score=63.06 Aligned_cols=182 Identities=9% Similarity=-0.058 Sum_probs=116.7
Q ss_pred CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC----cEEEecc-CCCcEEEEEECCC
Q 002407 586 MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER----QVVDWND-LHEMVTAACYTPD 660 (927)
Q Consensus 586 ~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~----~~v~~~~-~~~~V~sla~spd 660 (927)
....|+..++........+.....+..|+|.+.++.++++-...+.|+.+++... ....... .-..+..|++.+.
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 4467888888877766666666778899999844555555555678999988753 2222222 3356678999887
Q ss_pred CCEEE-EEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-CcEEEEECCcceEEEE
Q 002407 661 GQGAL-VGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-SRIRVVDGIDLVHKFK 738 (927)
Q Consensus 661 g~~l~-tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-g~I~VwD~~~~~~~~~ 738 (927)
+..|+ +-...+.|.+.++......... .........|++.|....++++-... +.|.+.++........
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~---------~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l 552 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKRKTLF---------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 552 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEE---------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred CCcEEEEecCCCeEEEEeCCCCeEEEEE---------eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE
Confidence 75554 4455688999999765433221 12334588999999766444444333 7888888644333222
Q ss_pred eecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCCC
Q 002407 739 GFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAES 776 (927)
Q Consensus 739 ~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~~ 776 (927)
..........|++++.+..|+.+. ....|...++....
T Consensus 553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 233345678899998777776664 45678888887644
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.053 Score=62.63 Aligned_cols=158 Identities=9% Similarity=0.199 Sum_probs=100.1
Q ss_pred ceEEEEEccC-CCCEEEEEECCCcEEEEeCCCCcEEEeccCC----CcEEEEEE-------CCCCCEEEEEECCC-----
Q 002407 609 YVTCIQFNPV-DDRYFISGSLDAKVRIWSIPERQVVDWNDLH----EMVTAACY-------TPDGQGALVGSYKG----- 671 (927)
Q Consensus 609 ~V~~v~fsp~-dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~----~~V~sla~-------spdg~~l~tgs~Dg----- 671 (927)
....|+|.|. .++++++-...+.|++.|+.++.+..+.... ..+..++| +++|.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678899983 3555555554567999999998877655432 35899999 99999777776654
Q ss_pred --eEEEEECCC-Ceeee-e--cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-------c--c---
Q 002407 672 --SCHLYNTSE-NKLQQ-K--SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-------D--L--- 733 (927)
Q Consensus 672 --~I~IwDl~~-~~~~~-~--~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-------~--~--- 733 (927)
.|.+++... +.... . ..+ ........++++|++..++++-..++.|..+|.. . .
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v--------~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLI--------AAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEE--------EEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred CceEEEEecCCCCceeecccceee--------ccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence 266666433 22210 0 000 0112345778899766577777788899999954 1 1
Q ss_pred --------eEEEEeecCCcceEEEEEecCCCEEEEE-ECCCcEEEEECCC
Q 002407 734 --------VHKFKGFRNTNSQISASLTANGRYVVSA-SEDSYVYVWKYEA 774 (927)
Q Consensus 734 --------~~~~~~~~~~~~v~sv~fspdg~~Lasg-s~Dg~I~IWdl~s 774 (927)
...+...........++|+|+|++|+.+ .....|+.+++..
T Consensus 292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred cccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 1122222233446789999999965555 4566788876644
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.61 Score=50.56 Aligned_cols=152 Identities=11% Similarity=0.005 Sum_probs=91.4
Q ss_pred cCCCCEEEEEecCCcEEEEEeCCCcEEEE-eC--CCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 565 GHLDDVLDLSWSKSQHLLSSSMDKTVRLW-HL--SSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 565 gH~~~V~~l~~spd~~L~Sgs~DgtV~lW-Dl--~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
++...+..+.+.+++.++..+..+.|..- |- .+-+.+. ......+..+.+.+ ++.++ .++.+|.+++++...++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~-~g~~~-~~~~~G~~~~s~~D~G~ 236 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTP-DGRLW-MIVNGGKIAFSDPDNSE 236 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECT-TSCEE-EEETTTEEEEEETTEEE
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC-CCCCCccceeEECC-CCCEE-EEeCCceEEEecCCCCC
Confidence 34457888999988666666666665543 42 2222221 23556788999988 76654 55567888776533333
Q ss_pred EEEecc-----CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEE
Q 002407 642 VVDWND-----LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEV 716 (927)
Q Consensus 642 ~v~~~~-----~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~L 716 (927)
.-.... ....+..+.+.+++..++++ .+|.| ++....++.-...... ......++.+.|.+++ .+
T Consensus 237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~------~~~~~~~~~v~~~~~~--~~ 306 (327)
T 2xbg_A 237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDV------KKVPSNFYKILFFSPD--QG 306 (327)
T ss_dssp EECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGG------TTSSSCCCEEEEEETT--EE
T ss_pred eeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCcc------CCCCCCeEEEEEECCC--ce
Confidence 222111 12358899999888766665 46766 4555555443322110 0123567788887543 57
Q ss_pred EEEECCCcEEEEE
Q 002407 717 LVTSADSRIRVVD 729 (927)
Q Consensus 717 lsgs~Dg~I~VwD 729 (927)
++++.+|.|.-++
T Consensus 307 ~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 307 FILGQKGILLRYV 319 (327)
T ss_dssp EEECSTTEEEEEC
T ss_pred EEEcCCceEEEEc
Confidence 8888899887776
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.098 Score=57.49 Aligned_cols=137 Identities=9% Similarity=0.191 Sum_probs=93.4
Q ss_pred CCcEEEEeC--CCCcEEEEEe-------cC-CceEEEEE--ccCCCC-EEEEEECCCcEEEEeCC-------CCcEEEec
Q 002407 587 DKTVRLWHL--SSKTCLKIFS-------HS-DYVTCIQF--NPVDDR-YFISGSLDAKVRIWSIP-------ERQVVDWN 646 (927)
Q Consensus 587 DgtV~lWDl--~t~~~~~~~~-------h~-~~V~~v~f--sp~dg~-~L~sgs~Dg~I~IWDl~-------t~~~v~~~ 646 (927)
+++|.+|++ .+++ +..+. .. ..+..+++ +|..+. ++++...+|.+..|++. +.+++..+
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 578999976 3443 44442 11 55677777 774454 68888889999999882 34567777
Q ss_pred cCCCcEEEEEECCCCCEEEEEECCCeEEEEECC-----CCeeeeecccccccccccCCCCCeEEEEEc--CCCCcEEEEE
Q 002407 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS-----ENKLQQKSPINLQNKKKRSHQRKITGFQFA--PGSSSEVLVT 719 (927)
Q Consensus 647 ~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~-----~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs--pdg~~~Llsg 719 (927)
.....+..+.+.+....|+++-.+.-|..|+.. +.+.+.... .......+..|++. +++..+|+++
T Consensus 177 ~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-------~g~l~aDvEGLai~~~~~g~gyLivS 249 (355)
T 3amr_A 177 KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-------GRHLTRDIEGLTIYYAADGKGYLMAS 249 (355)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-------SSSBCSCEEEEEEEECGGGCEEEEEE
T ss_pred cCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-------CCccccCcceEEEEecCCCCEEEEEE
Confidence 778899999999999999999999778888855 233332221 01223468888884 5555355555
Q ss_pred E-CCCcEEEEECC
Q 002407 720 S-ADSRIRVVDGI 731 (927)
Q Consensus 720 s-~Dg~I~VwD~~ 731 (927)
+ .+.++.|||..
T Consensus 250 sQG~~s~~Vydr~ 262 (355)
T 3amr_A 250 SQGNSSYAIYDRQ 262 (355)
T ss_dssp EGGGTEEEEEESS
T ss_pred cCCCCEEEEEECC
Confidence 5 67899999963
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0028 Score=77.06 Aligned_cols=199 Identities=9% Similarity=-0.019 Sum_probs=118.1
Q ss_pred CCEEEEEecCC-cEEEEEe-CCCcEEEEeCCC----CcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC
Q 002407 568 DDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSS----KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs-~DgtV~lWDl~t----~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~ 640 (927)
..+..|+|.+. +.|+.+. ..+.|+.+++.. ......+. .-.....|++.+..++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 45667889875 6665554 467899999875 22222221 12235678887645666666556788999998876
Q ss_pred cEEEeccC-CCcEEEEEECCCCCEEEEEEC-C-CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEE
Q 002407 641 QVVDWNDL-HEMVTAACYTPDGQGALVGSY-K-GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (927)
Q Consensus 641 ~~v~~~~~-~~~V~sla~spdg~~l~tgs~-D-g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Ll 717 (927)
....+... ......+++.|.+.+|+.+.. . +.|..+++......... .......+.|+|+|++..+++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~---------~~~l~~PnGlavd~~~~~LY~ 556 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---------TENIQWPNGITLDLLSGRLYW 556 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES---------CSSCSSCCCEEECTTTCCEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE---------eCCCCCccEEEEeccCCEEEE
Confidence 65544432 245678899996655555433 2 67888777543221111 122345678999998776777
Q ss_pred EEECCCcEEEEECCc-ceEEEEe-ecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 718 VTSADSRIRVVDGID-LVHKFKG-FRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 718 sgs~Dg~I~VwD~~~-~~~~~~~-~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
+-...+.|.+++... ....+.. .........+++..+ .++++....+.|..++..++.
T Consensus 557 aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 557 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp EETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred EecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 777788999998532 2222221 111222344555543 444555566788888876543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.06 Score=58.71 Aligned_cols=167 Identities=8% Similarity=0.036 Sum_probs=108.5
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccC-----C--CcEEEEEE---CCCCCEEEEEEC------
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDL-----H--EMVTAACY---TPDGQGALVGSY------ 669 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~-----~--~~V~sla~---spdg~~l~tgs~------ 669 (927)
.....+++|++.++.++++.-..++|..|+...+..... +.. . ..+..|.| .|++.++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 445668899884444444444789999999986654443 221 1 14688999 688777776442
Q ss_pred -------CCeEEEEECC---CCeeeeecccccccc---cccC-CCCCeEEEEEcCCCCcEEEEEECC-CcEEEEECCc-c
Q 002407 670 -------KGSCHLYNTS---ENKLQQKSPINLQNK---KKRS-HQRKITGFQFAPGSSSEVLVTSAD-SRIRVVDGID-L 733 (927)
Q Consensus 670 -------Dg~I~IwDl~---~~~~~~~~~i~~~~~---~~~~-h~~~Vtsl~fspdg~~~Llsgs~D-g~I~VwD~~~-~ 733 (927)
+..|..||+. +++......+..... ++.+ .......++..++|. ..++++.. +.|..++... .
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTTSCC
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCCCCE
Confidence 5779999999 777655443311000 0001 123488999999987 67777777 8888887532 2
Q ss_pred eEEEEeec----CCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 734 VHKFKGFR----NTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 734 ~~~~~~~~----~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
...+.... .......++++|+|++|++....|.|..+|+..
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 23222111 112245889999999998887799999999984
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.43 E-value=3.6 Score=52.55 Aligned_cols=174 Identities=13% Similarity=0.143 Sum_probs=104.0
Q ss_pred CCCcEEEEeCCCCc--EEEEEecCCceEEEEEccCCCCEEEEEECC----------------------------------
Q 002407 586 MDKTVRLWHLSSKT--CLKIFSHSDYVTCIQFNPVDDRYFISGSLD---------------------------------- 629 (927)
Q Consensus 586 ~DgtV~lWDl~t~~--~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D---------------------------------- 629 (927)
.++.++|..+..-+ .++.+.....+..++++| ..+.++.+..+
T Consensus 713 ~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1158)
T 3ei3_A 713 NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSS 791 (1158)
T ss_dssp CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC--
T ss_pred cCCceEEEEecccCCeeEEEEeCCCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccc
Confidence 34568888876433 345556777888999998 55544433211
Q ss_pred ---------------CcEEEEeCCCCcEEEeccC--CCcEEEEEE---CC-CCCEEEEEE----------CCCeEEEEEC
Q 002407 630 ---------------AKVRIWSIPERQVVDWNDL--HEMVTAACY---TP-DGQGALVGS----------YKGSCHLYNT 678 (927)
Q Consensus 630 ---------------g~I~IWDl~t~~~v~~~~~--~~~V~sla~---sp-dg~~l~tgs----------~Dg~I~IwDl 678 (927)
+.|++.|-.+.+.+..+.. .+.+.+++. .. ...+|++|+ ..|.|++|++
T Consensus 792 ~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v 871 (1158)
T 3ei3_A 792 STAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQY 871 (1158)
T ss_dssp --------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEE
T ss_pred cccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEE
Confidence 2366777666666554333 345555553 22 247899887 3578999999
Q ss_pred CCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecCCcceEEEEEecCCC
Q 002407 679 SENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANGR 756 (927)
Q Consensus 679 ~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~ 756 (927)
..+++..... ....+.|++++-.. | +|+++- ..+|++|+... .+. .... ....+..+.....+.
T Consensus 872 ~~~kL~lv~~--------~~v~g~v~al~~~~-g--~Lla~i-g~~l~vy~l~~~~~L~-~~~~-~~~~i~~~~l~~~~~ 937 (1158)
T 3ei3_A 872 SDGKLQTVAE--------KEVKGAVYSMVEFN-G--KLLASI-NSTVRLYEWTTEKELR-TECN-HYNNIMALYLKTKGD 937 (1158)
T ss_dssp ETTEEEEEEE--------EEESSCEEEEEEET-T--EEEEEE-TTEEEEEEECTTSCEE-EEEE-ECCCSCEEEEEEETT
T ss_pred ECCEEEEEEE--------EEcCCcCEEEeeeC-C--EEEEEc-CCEEEEEECCCCceEE-EEee-ccccEEEEEEeccCC
Confidence 7555443322 24467788887554 3 455544 57899999543 222 2111 111133334444678
Q ss_pred EEEEEECCCcEEEEECCC
Q 002407 757 YVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 757 ~Lasgs~Dg~I~IWdl~s 774 (927)
+++.|..-..|.++.++.
T Consensus 938 ~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 938 FILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp EEEEEESSBCEEEEEEET
T ss_pred EEEEEEhhheEEEEEEEc
Confidence 999999888888877654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.43 Score=52.47 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=33.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecc-cccCccccEEEEccCCC
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK-QEDGHLNMLLLANGSPE 514 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~-~~~~~~~~v~~v~~spd 514 (927)
-...+.|+|.|+|+++++ ..+|.|++++ +++. ..+... ...........++++|+
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pd 85 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPR 85 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTT
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCC
Confidence 345789999999996555 5679999988 3331 111110 11112345567788887
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=1.5 Score=48.26 Aligned_cols=190 Identities=14% Similarity=0.055 Sum_probs=91.9
Q ss_pred CEEEEEecCC----cEEEEEeC----C----CcEEEEeCCCC--c---E--E-EEEe--cCCceEEEEEccCCCCEEEEE
Q 002407 569 DVLDLSWSKS----QHLLSSSM----D----KTVRLWHLSSK--T---C--L-KIFS--HSDYVTCIQFNPVDDRYFISG 626 (927)
Q Consensus 569 ~V~~l~~spd----~~L~Sgs~----D----gtV~lWDl~t~--~---~--~-~~~~--h~~~V~~v~fsp~dg~~L~sg 626 (927)
....|+++|+ +.|+.+.. + ..|..|+.... . . + ..+. .......|+|.| ++.++++.
T Consensus 74 g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~ 152 (354)
T 3a9g_A 74 GLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITT 152 (354)
T ss_dssp SEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEEC
T ss_pred ceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEE
Confidence 3566777775 55544433 2 45666665543 1 1 1 1122 122356799999 88877664
Q ss_pred EC-------------CCcEEEEeCCCC--------cEEEeccCCCcEEEEEECC-CCCEEEEEECCC---eEEEEECCCC
Q 002407 627 SL-------------DAKVRIWSIPER--------QVVDWNDLHEMVTAACYTP-DGQGALVGSYKG---SCHLYNTSEN 681 (927)
Q Consensus 627 s~-------------Dg~I~IWDl~t~--------~~v~~~~~~~~V~sla~sp-dg~~l~tgs~Dg---~I~IwDl~~~ 681 (927)
+. .|.|.-++.... ....+.........++|+| +|.++++-.... .|.+.. .+
T Consensus 153 G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G 230 (354)
T 3a9g_A 153 GDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KG 230 (354)
T ss_dssp CCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TT
T ss_pred CCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CC
Confidence 32 245555555432 0111112223456799999 566544432221 233322 22
Q ss_pred eeee---------ecccccccccccCCCCCeEEEEEc-------CCCCcEEEEEECCCcEEEEECCcc--eE-EEEeec-
Q 002407 682 KLQQ---------KSPINLQNKKKRSHQRKITGFQFA-------PGSSSEVLVTSADSRIRVVDGIDL--VH-KFKGFR- 741 (927)
Q Consensus 682 ~~~~---------~~~i~~~~~~~~~h~~~Vtsl~fs-------pdg~~~Llsgs~Dg~I~VwD~~~~--~~-~~~~~~- 741 (927)
.... ......+.............++|. .++ .++++....+.|...+.... .. ......
T Consensus 231 ~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 309 (354)
T 3a9g_A 231 GNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVRKISTFFKN 309 (354)
T ss_dssp CBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEEEEEEECTT
T ss_pred CcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCcccceeeeccC
Confidence 1100 000000000000123457888884 344 35555556677888775421 21 111121
Q ss_pred CCcceEEEEEecCCCEEEEEE
Q 002407 742 NTNSQISASLTANGRYVVSAS 762 (927)
Q Consensus 742 ~~~~v~sv~fspdg~~Lasgs 762 (927)
....+..+++.|||.+.++..
T Consensus 310 ~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 310 VFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCeeEEEECCCCcEEEEEe
Confidence 235678899999997766654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.011 Score=71.70 Aligned_cols=179 Identities=8% Similarity=-0.106 Sum_probs=104.5
Q ss_pred CCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEE-ECCCcEEEEeCCC----CcEEEecc-CCCcEEEEEECCC
Q 002407 587 DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISG-SLDAKVRIWSIPE----RQVVDWND-LHEMVTAACYTPD 660 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sg-s~Dg~I~IWDl~t----~~~v~~~~-~~~~V~sla~spd 660 (927)
.+.|+..++.+.+...++.....+..|+|.+ ....|+.. ...+.|+.+++.. ........ .-..+..|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 3578888888776655555445677899998 55555544 4567899999875 22222221 1224556788854
Q ss_pred C-CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-CcEEEEECCcceEEEE
Q 002407 661 G-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-SRIRVVDGIDLVHKFK 738 (927)
Q Consensus 661 g-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-g~I~VwD~~~~~~~~~ 738 (927)
+ .++++-...+.|.++++.......... ........|++.|.+..++++-... +.|.+++.........
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~---------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l 534 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFR---------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 534 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECC---------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEe---------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence 4 444444556789999987654333221 1223456788998766444444333 7888877432111111
Q ss_pred eecCCcceEEEEEecCCCEEEEE-ECCCcEEEEECCCC
Q 002407 739 GFRNTNSQISASLTANGRYVVSA-SEDSYVYVWKYEAE 775 (927)
Q Consensus 739 ~~~~~~~v~sv~fspdg~~Lasg-s~Dg~I~IWdl~s~ 775 (927)
..........++|++++..|+.+ ...+.|.++++...
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 11123345679999876555544 45677999998753
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=1.6 Score=48.19 Aligned_cols=183 Identities=11% Similarity=0.061 Sum_probs=109.3
Q ss_pred CEEEEEecCCcEEEEEe-------------CCCcEEEEeCCC--CcEEEEEec--------CCceEEEEEccC-CCC-EE
Q 002407 569 DVLDLSWSKSQHLLSSS-------------MDKTVRLWHLSS--KTCLKIFSH--------SDYVTCIQFNPV-DDR-YF 623 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs-------------~DgtV~lWDl~t--~~~~~~~~h--------~~~V~~v~fsp~-dg~-~L 623 (927)
...+|...+++.+++++ .+|.|.++|+.+ .+. ..+.. ......|.+.+. ++. +|
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 44566777888888776 689999999974 232 22221 235677777651 232 34
Q ss_pred EEE-EC--CCcEEEEeCCC--CcE--EEeccCC--CcEEEEEECCCCCEEEEEEC-----------------CCeEEEEE
Q 002407 624 ISG-SL--DAKVRIWSIPE--RQV--VDWNDLH--EMVTAACYTPDGQGALVGSY-----------------KGSCHLYN 677 (927)
Q Consensus 624 ~sg-s~--Dg~I~IWDl~t--~~~--v~~~~~~--~~V~sla~spdg~~l~tgs~-----------------Dg~I~IwD 677 (927)
+++ .. +..|.+|++.. +.. +....+. ...+.+.+.++|.+.++... .|.|+.||
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444 33 45677777654 222 2222222 46899999999987776531 24555555
Q ss_pred CCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecCCcceEEEEEec-C
Q 002407 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTA-N 754 (927)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fsp-d 754 (927)
.. +.... ...-...+.++|+|+++.++++-+..+.|..|+... ..............-.+++.+ +
T Consensus 210 ~~--~~~~~----------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~ 277 (355)
T 3sre_A 210 PN--DVRVV----------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVT 277 (355)
T ss_dssp TT--CCEEE----------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTT
T ss_pred CC--eEEEe----------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCC
Confidence 53 21111 122345789999999986667777889999998431 121111112234556788888 5
Q ss_pred CCEEEEEECC
Q 002407 755 GRYVVSASED 764 (927)
Q Consensus 755 g~~Lasgs~D 764 (927)
|++.+++..+
T Consensus 278 G~lwva~~~~ 287 (355)
T 3sre_A 278 GDLWVGCHPN 287 (355)
T ss_dssp CCEEEEEESC
T ss_pred CcEEEEecCC
Confidence 8888777644
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=4 Score=48.49 Aligned_cols=138 Identities=9% Similarity=-0.074 Sum_probs=82.2
Q ss_pred CCcEEEEeCCCCcE--EE-eccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCCCeeeeecccccccccccCCCCCeE
Q 002407 629 DAKVRIWSIPERQV--VD-WNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704 (927)
Q Consensus 629 Dg~I~IWDl~t~~~--v~-~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt 704 (927)
.+.|+..++..... +. ....-..+.+++|.+.+..|+.+. ..+.|+.+++......... ........
T Consensus 325 ~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~---------~~~~~~p~ 395 (619)
T 3s94_A 325 RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV---------TAQIAHPD 395 (619)
T ss_dssp SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---------CSSCSCCC
T ss_pred ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE---------ECCCCCcC
Confidence 34566666655431 11 112224678899998665555554 5678999988764332221 12234567
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEEC--CCcEEEEECCCC
Q 002407 705 GFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASE--DSYVYVWKYEAE 775 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~--Dg~I~IWdl~s~ 775 (927)
++++.+.+.+++++-...+.|.+.+...................+++.|...+|+.+.. ...|...+++..
T Consensus 396 GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~ 468 (619)
T 3s94_A 396 GIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS 468 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred ceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC
Confidence 89998766656677677889999985433222222223456788999997445544432 356776666543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.92 E-value=1.1 Score=49.14 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=62.7
Q ss_pred CCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEE--e----cCCceEEEEEccCC---CCEEEEEEC-C-----Cc
Q 002407 567 LDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF--S----HSDYVTCIQFNPVD---DRYFISGSL-D-----AK 631 (927)
Q Consensus 567 ~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~--~----h~~~V~~v~fsp~d---g~~L~sgs~-D-----g~ 631 (927)
-.....|+|.|++.|+.+..++.|++++ .++..... . .......|+|+| + +..|+.+.. . ..
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccE
Confidence 4456799999998888888889999998 44322211 1 235688999999 6 344444433 2 56
Q ss_pred EEEEeCCCCc------EEEecc----CCCcEEEEEECCCCCEEEEE
Q 002407 632 VRIWSIPERQ------VVDWND----LHEMVTAACYTPDGQGALVG 667 (927)
Q Consensus 632 I~IWDl~t~~------~v~~~~----~~~~V~sla~spdg~~l~tg 667 (927)
|..|+..... ++.... .......++|.|||.++++-
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 8888876532 122122 11234689999999766654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.71 Score=50.95 Aligned_cols=131 Identities=16% Similarity=0.207 Sum_probs=77.3
Q ss_pred CCcEEEEeCCCC-cE---EEEEec--CCceEEEEEccCCCCEEEEEEC-----------------CCcEEEEeCCCCcEE
Q 002407 587 DKTVRLWHLSSK-TC---LKIFSH--SDYVTCIQFNPVDDRYFISGSL-----------------DAKVRIWSIPERQVV 643 (927)
Q Consensus 587 DgtV~lWDl~t~-~~---~~~~~h--~~~V~~v~fsp~dg~~L~sgs~-----------------Dg~I~IWDl~t~~~v 643 (927)
+.+|.+|++... .. +..+.+ -...+.+.+.+ ++.++++... .|.|..+|. +++.
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~ 214 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR 214 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE
Confidence 456777776543 22 222322 24578999999 8887776541 234555554 3433
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCC-CeeeeecccccccccccCCCCCeEEEEEcC-CCCcEEEEEE
Q 002407 644 DWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAP-GSSSEVLVTS 720 (927)
Q Consensus 644 ~~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp-dg~~~Llsgs 720 (927)
.....-...+.++|+||++.|+++. ..+.|..|++.. +.+.....+ ......-.+++.+ +|. +.+++.
T Consensus 215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--------~~~g~PDGi~vD~e~G~-lwva~~ 285 (355)
T 3sre_A 215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--------SFDTLVDNISVDPVTGD-LWVGCH 285 (355)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--------ECSSEEEEEEECTTTCC-EEEEEE
T ss_pred EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--------eCCCCCceEEEeCCCCc-EEEEec
Confidence 3333345688999999998877765 568899999864 333222111 1135577888888 475 444444
Q ss_pred CC-CcEEEEE
Q 002407 721 AD-SRIRVVD 729 (927)
Q Consensus 721 ~D-g~I~VwD 729 (927)
.+ +.|..|+
T Consensus 286 ~~g~~v~~~~ 295 (355)
T 3sre_A 286 PNGMRIFFYD 295 (355)
T ss_dssp SCHHHHHSCC
T ss_pred CCceEEEEEC
Confidence 33 3444455
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=95.44 E-value=6.6 Score=47.44 Aligned_cols=314 Identities=9% Similarity=0.029 Sum_probs=168.8
Q ss_pred ecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeec
Q 002407 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (927)
Q Consensus 417 ~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~ 496 (927)
..|....+|.|...| |..|+...+.+...............|.+|...+++..|..|.. +-|..++..+++... +.
T Consensus 152 ~~d~~g~lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~- 227 (758)
T 3ott_A 152 IRTKDNQIYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TE- 227 (758)
T ss_dssp EECTTCCEEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EE-
T ss_pred EEcCCCCEEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-cc-
Confidence 344455567776655 66677665544322110000001235899988887765554543 457778876553221 11
Q ss_pred ccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEc--------cCCC
Q 002407 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ--------GHLD 568 (927)
Q Consensus 497 ~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~--------gH~~ 568 (927)
......|..+....++.+.+.. ..+..... .....+..+. -...
T Consensus 228 ---~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~------------------------~~~~~~~~~~~~~~~~~~l~~~ 279 (758)
T 3ott_A 228 ---AFHNNSIKSLALDGNGDLLAGT-DNGLYVYH------------------------NDTTPLQHIIHDSRNIQSLTNN 279 (758)
T ss_dssp ---EEEEEEEEEEEECTTCCEEEEE-TTEEEEEC------------------------CTTSCCEEECCCTTCTTSCSCS
T ss_pred ---CCCCCeEEEEEEcCCCCEEEEe-CCceeEEe------------------------cCCCcEEEEEcCCCCcCcCCcC
Confidence 0112345666666666666554 22322111 0111111111 1234
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe--------cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~--------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~ 640 (927)
.|.+|....++.|..|+..| |.++... . ....+. ....|.++.-.. ++.+. .|+.+| +..++..++
T Consensus 280 ~i~~i~~D~~g~lWiGT~~G-l~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~i~~D~-~g~lW-iGt~~G-l~~~~~~~~ 353 (758)
T 3ott_A 280 IIWNIFADQEHNIWLGTDYG-ISLSRYN-S-ALQFIPISQITGTGDGNQFYSLFRDS-KGFYW-FGGANG-LIRFTDPAG 353 (758)
T ss_dssp CEEEEEECTTCCEEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECT-TCCEE-EEETTE-EEEESCTTS
T ss_pred eEEEEEEcCCCCEEEEeCCc-ccccccC-C-ceeEEecccCCCCCCCceEEEEEEcC-CCCEE-EeeCCc-ceeeccccc
Confidence 58888887778888888777 5554432 2 112221 134688888776 66544 455554 666765543
Q ss_pred c--EEEecc--------CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 641 Q--VVDWND--------LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 641 ~--~v~~~~--------~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
+ ...... ....|.++.-..+|. |.+|+ ++-|..||..+++........ .........|.++...+
T Consensus 354 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~i~~d~ 428 (758)
T 3ott_A 354 ERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVD---NTGTYNTNWTYYIFEDT 428 (758)
T ss_dssp SCCCCEEECTTCSSSCCSCSCEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEEC---CC--CBSSSEEEEEECT
T ss_pred ccceeEEeccCCcCCCCCCCceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCC---CcCCCCCceEEEEEEcC
Confidence 2 111111 124688888888876 45566 457999999887654321100 00001235688888777
Q ss_pred CCCcEEEEEECCCcEEEEECCcc-------e---EEEEee--cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 711 GSSSEVLVTSADSRIRVVDGIDL-------V---HKFKGF--RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~VwD~~~~-------~---~~~~~~--~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
++ .|.+|+..+-|.++|.... . ..+... .....|.++...++|.+.+.++..+-|..|+..+.
T Consensus 429 ~g--~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~ 503 (758)
T 3ott_A 429 AG--QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTR 503 (758)
T ss_dssp TS--EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTT
T ss_pred CC--CEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCC
Confidence 65 5778887777888884321 1 111111 11234788888888987764444455888887654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.19 Score=51.56 Aligned_cols=181 Identities=8% Similarity=0.009 Sum_probs=102.1
Q ss_pred EEEEEeCCCcEEEEeCCCCc------EEEEEec--CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCc
Q 002407 580 HLLSSSMDKTVRLWHLSSKT------CLKIFSH--SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM 651 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~------~~~~~~h--~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~ 651 (927)
.|+....| +|+.=.+..+. ....+.. =..+..++|+| ++.+.++ .+|.+.-.+..+.....+......
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 45566666 66655555443 2233333 24678999999 8886666 677777777655333333333223
Q ss_pred --------EEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC
Q 002407 652 --------VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (927)
Q Consensus 652 --------V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg 723 (927)
..++.|.|+|.+.++ .||.|+-++..+.......-. ..+....--..+..|.|.|+|. |.+.. |+
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~--a~~vg~~gw~~~~~lff~p~G~--Lyav~-dg 154 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIAR--ATEVGSGGWSGFKFLFFHPNGY--LYAVH-GQ 154 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH--SEEEECSSGGGEEEEEECTTSC--EEEEE-TT
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceecc--ccEeccCCCCceEEEEECCCce--EEEEe-CC
Confidence 378999999988877 569998887643221111000 0000012235689999999985 44444 88
Q ss_pred cEEEEECC-c------ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 724 RIRVVDGI-D------LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 724 ~I~VwD~~-~------~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
.++-.... . ......+......-..+.|.+++.+.++. ++ +||.....
T Consensus 155 ~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~p 209 (236)
T 1tl2_A 155 QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYPP 209 (236)
T ss_dssp EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESCC
T ss_pred cEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCCc
Confidence 75443311 0 01122222222334456799999877766 66 55555443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.16 E-value=5.8 Score=45.10 Aligned_cols=31 Identities=6% Similarity=-0.073 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~ 486 (927)
-...+.|+|.|+|+++++-...+.|++++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~ 56 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPE 56 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECC
Confidence 4467899999999977775433467777654
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=7.2 Score=46.20 Aligned_cols=196 Identities=6% Similarity=-0.033 Sum_probs=117.5
Q ss_pred CCEEEEEecCC-cEEEEEe-CCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 002407 568 DDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs-~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~ 644 (927)
..+..|+|.+. +.|+.+. ..+.|+.+++........+. .-.....|++.+..++++++-...+.|.+.++.......
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 45778999874 6665554 57889999988655444443 235677899987456666666667889999987654333
Q ss_pred ec-cCCCcEEEEEECCCCCEEEEEEC--CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 645 WN-DLHEMVTAACYTPDGQGALVGSY--KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 645 ~~-~~~~~V~sla~spdg~~l~tgs~--Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
.. ..-.....+++.|...+|..... .+.|...++......... .......+++++.+....++++-+.
T Consensus 429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~---------~~~l~~P~GlalD~~~~~LY~aD~~ 499 (619)
T 3s94_A 429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLV---------NTSLGWPNGLALDYDEGKIYWGDAK 499 (619)
T ss_dssp EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE---------CSSCSCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEE---------eCCCCCCeeeEEcccCCEEEEEECC
Confidence 33 23357899999997445554432 356777777654322111 1334567899999877755555566
Q ss_pred CCcEEEEECCc-ceEEEEeecCCcceEEEEEecCCCEEEEE-ECCCcEEEEECCCC
Q 002407 722 DSRIRVVDGID-LVHKFKGFRNTNSQISASLTANGRYVVSA-SEDSYVYVWKYEAE 775 (927)
Q Consensus 722 Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasg-s~Dg~I~IWdl~s~ 775 (927)
.+.|..++... ....+.. ........+++..+ +|+.+ ...+.|...+..++
T Consensus 500 ~~~I~~~~~dG~~~~~~~~-~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 500 TDKIEVMNTDGTGRRVLVE-DKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp TTEEEEEESSSCCCEEEEE-CCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSC
T ss_pred CCEEEEEecCCCceEEEec-cCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCC
Confidence 78898888432 2222211 11112234444433 44433 34455666666554
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=4.1 Score=44.61 Aligned_cols=204 Identities=11% Similarity=0.082 Sum_probs=107.5
Q ss_pred CCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCc-EEEEEe----cCCceEEEEEccCC---CCEEEEEEC----C----C
Q 002407 567 LDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKT-CLKIFS----HSDYVTCIQFNPVD---DRYFISGSL----D----A 630 (927)
Q Consensus 567 ~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~-~~~~~~----h~~~V~~v~fsp~d---g~~L~sgs~----D----g 630 (927)
-.....|+|.|++.|+.+..++.|++++. .++ .+..+. .......|+|+| + +..|+.+.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcce
Confidence 45678999999988888888999999973 444 222111 235688999999 5 344444432 2 5
Q ss_pred cEEEEeCCCC--c-----E-EEecc--CCCcEEEEEECCCCCEEEEEEC-------------CCeEEEEECCCCeeeeec
Q 002407 631 KVRIWSIPER--Q-----V-VDWND--LHEMVTAACYTPDGQGALVGSY-------------KGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 631 ~I~IWDl~t~--~-----~-v~~~~--~~~~V~sla~spdg~~l~tgs~-------------Dg~I~IwDl~~~~~~~~~ 687 (927)
.|..|+.... . . +.... .......++|.|||.++++-+. .|.|.-++.... ....-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCC
Confidence 6777776654 1 1 11111 1123467999999986666432 245665555421 10000
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC---cEEEEECCc---------------ceEEEEee-cCCcceEE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS---RIRVVDGID---------------LVHKFKGF-RNTNSQIS 748 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg---~I~VwD~~~---------------~~~~~~~~-~~~~~v~s 748 (927)
... .......-......++|+|+...++++-.... .|.+..... ........ ........
T Consensus 185 pf~-~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 185 PFP-NSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp SST-TCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred CCC-CCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 000 00000011123568999994332333332221 244433111 00111111 12334667
Q ss_pred EEEe-------cCCCEEEEEECCCcEEEEECCC
Q 002407 749 ASLT-------ANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 749 v~fs-------pdg~~Lasgs~Dg~I~IWdl~s 774 (927)
++|. .+|.++++.-..+.|...+++.
T Consensus 264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp EEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred eEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 7773 5677777766677788888765
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=94.95 E-value=5.3 Score=43.61 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=39.0
Q ss_pred CCeEEEEEcCCC------CcEEEEEECCCcEEEEECCc--ceEEEEee-cCCcceEEEEEecCCCEEEEEE-CCCcEEEE
Q 002407 701 RKITGFQFAPGS------SSEVLVTSADSRIRVVDGID--LVHKFKGF-RNTNSQISASLTANGRYVVSAS-EDSYVYVW 770 (927)
Q Consensus 701 ~~Vtsl~fspdg------~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IW 770 (927)
..+..++|.... ..++++....+.|...+... ........ .....+..+++.|||.++++.. .+| +||
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~ 348 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--ELL 348 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EEE
Confidence 457778886421 23555555667777766332 22221111 1234688999999998666543 344 455
Q ss_pred EC
Q 002407 771 KY 772 (927)
Q Consensus 771 dl 772 (927)
.+
T Consensus 349 ri 350 (353)
T 2g8s_A 349 KV 350 (353)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.79 E-value=1.3 Score=46.84 Aligned_cols=182 Identities=13% Similarity=0.123 Sum_probs=95.9
Q ss_pred cEEEEEeCC-----CcEEEEeCCCCc---EEEEEe--cCCceEEEEEccCCCCEEEEEECC-----CcEEEEeCCCCcEE
Q 002407 579 QHLLSSSMD-----KTVRLWHLSSKT---CLKIFS--HSDYVTCIQFNPVDDRYFISGSLD-----AKVRIWSIPERQVV 643 (927)
Q Consensus 579 ~~L~Sgs~D-----gtV~lWDl~t~~---~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~D-----g~I~IWDl~t~~~v 643 (927)
..++.|+.+ ..+.+||+.+.+ ....-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 64 ~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 141 (301)
T 2vpj_A 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWS 141 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence 445555544 468999998876 443322 11111222222 56777777654 35889998887644
Q ss_pred EeccCC---CcEEEEEECCCCCEEEEEECC-----CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 644 DWNDLH---EMVTAACYTPDGQGALVGSYK-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 644 ~~~~~~---~~V~sla~spdg~~l~tgs~D-----g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
...... ....++.+ +++.++.|+.+ ..+.+||+.+.+......+. ........+.+ + ..+
T Consensus 142 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-------~~r~~~~~~~~--~-~~i 209 (301)
T 2vpj_A 142 MLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA-------TKRSGAGVALL--N-DHI 209 (301)
T ss_dssp EEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS-------SCCBSCEEEEE--T-TEE
T ss_pred ECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC-------cccccceEEEE--C-CEE
Confidence 332222 12222222 67777887754 45899999888765442211 11111222223 2 346
Q ss_pred EEEEECC-----CcEEEEECCcceEEEEee-cCCcceEEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 002407 716 VLVTSAD-----SRIRVVDGIDLVHKFKGF-RNTNSQISASLTANGRYVVSASED-----SYVYVWKYEAE 775 (927)
Q Consensus 716 Llsgs~D-----g~I~VwD~~~~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~D-----g~I~IWdl~s~ 775 (927)
++.|+.+ ..|.+||..+..-..... .....-..++ .-++++++.|+.+ ..|.+||+++.
T Consensus 210 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 210 YVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT-VLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred EEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE-EECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 7777654 568899965433222111 1111111222 2367777777755 34677777653
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.84 Score=51.28 Aligned_cols=148 Identities=9% Similarity=0.135 Sum_probs=91.0
Q ss_pred CCCEEEEEECCCcEEEEeCCCCc---EEEecc--CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee-------
Q 002407 619 DDRYFISGSLDAKVRIWSIPERQ---VVDWND--LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK------- 686 (927)
Q Consensus 619 dg~~L~sgs~Dg~I~IWDl~t~~---~v~~~~--~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~------- 686 (927)
++..++.+- ++.||.-++.... .+.... .-..|..+..+|+|.+|+..+ +..|.|..+..+.....
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 444444443 4667777766332 222221 122678899999999999885 55888888874321111
Q ss_pred ---cccccccccccCCCCCeEEEEEcCCCCc--EEEEEECCCcEEEEECCc----ceEEEE-------eecCCcceEEEE
Q 002407 687 ---SPINLQNKKKRSHQRKITGFQFAPGSSS--EVLVTSADSRIRVVDGID----LVHKFK-------GFRNTNSQISAS 750 (927)
Q Consensus 687 ---~~i~~~~~~~~~h~~~Vtsl~fspdg~~--~Llsgs~Dg~I~VwD~~~----~~~~~~-------~~~~~~~v~sv~ 750 (927)
..+.+... ......+|..+.|+|-+.. .|++-..|+.|++||... .. .+. .......+.+++
T Consensus 109 ~q~~ty~l~~~-~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 109 FQIFHYSIDEE-EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TEEEEEEGGGC-C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred cceeEEEcCCc-ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 00111100 0113578999999996543 899999999999999543 11 121 111225678999
Q ss_pred EecCCCEEEEEE--CCCcEEEE
Q 002407 751 LTANGRYVVSAS--EDSYVYVW 770 (927)
Q Consensus 751 fspdg~~Lasgs--~Dg~I~IW 770 (927)
|..++-.|...+ ..|.||-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 999887777755 77888754
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.65 E-value=1.2 Score=47.03 Aligned_cols=182 Identities=13% Similarity=0.151 Sum_probs=95.1
Q ss_pred cEEEEEeCC-----CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCC-----cEEEEeCCCCcEEEec
Q 002407 579 QHLLSSSMD-----KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDA-----KVRIWSIPERQVVDWN 646 (927)
Q Consensus 579 ~~L~Sgs~D-----gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg-----~I~IWDl~t~~~v~~~ 646 (927)
..++.|+.+ ..+.+||..+.+....-. ....-.+++.. ++.+++.|+.++ .+.+||+.+.+-....
T Consensus 63 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 140 (302)
T 2xn4_A 63 LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA 140 (302)
T ss_dssp EEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred EEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence 445555543 358899998876544432 11111222222 577778887654 4778898887655433
Q ss_pred cCC---CcEEEEEECCCCCEEEEEECC-------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEE
Q 002407 647 DLH---EMVTAACYTPDGQGALVGSYK-------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEV 716 (927)
Q Consensus 647 ~~~---~~V~sla~spdg~~l~tgs~D-------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~L 716 (927)
... .....+. -+++.++.|+.+ ..+.+||+.+.+......+. ........+.+ ++ .++
T Consensus 141 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-------~~r~~~~~~~~--~~-~iy 208 (302)
T 2xn4_A 141 PMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS-------TRRSGAGVGVL--NN-LLY 208 (302)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCS-------SCCBSCEEEEE--TT-EEE
T ss_pred CCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCc-------cccccccEEEE--CC-EEE
Confidence 222 1222222 256777777543 45899999888765442211 11111122222 23 367
Q ss_pred EEEECC-----CcEEEEECCcceEEEEe-ecCCcceEEEEEecCCCEEEEEECCC-----cEEEEECCCC
Q 002407 717 LVTSAD-----SRIRVVDGIDLVHKFKG-FRNTNSQISASLTANGRYVVSASEDS-----YVYVWKYEAE 775 (927)
Q Consensus 717 lsgs~D-----g~I~VwD~~~~~~~~~~-~~~~~~v~sv~fspdg~~Lasgs~Dg-----~I~IWdl~s~ 775 (927)
+.|+.+ ..+.+||.....-.... ......-..++ ..++++++.|+.++ .|.+||+.+.
T Consensus 209 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 209 AVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 777654 46889996543222111 11111111222 23667777777553 3777777654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.62 E-value=1.2 Score=47.20 Aligned_cols=182 Identities=8% Similarity=0.052 Sum_probs=95.4
Q ss_pred cEEEEEeCC----CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECC------CcEEEEeCCCCcEEEec
Q 002407 579 QHLLSSSMD----KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLD------AKVRIWSIPERQVVDWN 646 (927)
Q Consensus 579 ~~L~Sgs~D----gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~D------g~I~IWDl~t~~~v~~~ 646 (927)
..++.|+.+ ..+.+||+.+.+....-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-....
T Consensus 57 ~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 134 (306)
T 3ii7_A 57 VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134 (306)
T ss_dssp EEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred EEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence 445566544 568899998886554432 11111122222 67777887765 45889999887654433
Q ss_pred cCC---CcEEEEEECCCCCEEEEEEC---------CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 647 DLH---EMVTAACYTPDGQGALVGSY---------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 647 ~~~---~~V~sla~spdg~~l~tgs~---------Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
... .....+. -+++.++.|+. -..+.+||+.+........+. .....-..+.+ ++ .
T Consensus 135 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-------~~r~~~~~~~~--~~-~ 202 (306)
T 3ii7_A 135 SMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI-------EARKNHGLVFV--KD-K 202 (306)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCS-------SCCBSCEEEEE--TT-E
T ss_pred CCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCcc-------chhhcceEEEE--CC-E
Confidence 222 1222222 26677777754 345899999988655442211 11111122222 33 3
Q ss_pred EEEEEECC-----CcEEEEECCcceEEEEee-cCCcceEEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 002407 715 EVLVTSAD-----SRIRVVDGIDLVHKFKGF-RNTNSQISASLTANGRYVVSASED-----SYVYVWKYEAE 775 (927)
Q Consensus 715 ~Llsgs~D-----g~I~VwD~~~~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~D-----g~I~IWdl~s~ 775 (927)
+++.|+.+ ..+.+||.....-..... .....-..++. -++++++.|+.+ ..|.+||+.+.
T Consensus 203 i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA-VGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE-ETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE-ECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 66666543 458888865432221111 11111112222 267777777754 34677777653
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=94.45 E-value=12 Score=45.25 Aligned_cols=309 Identities=7% Similarity=0.015 Sum_probs=164.3
Q ss_pred ecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeec
Q 002407 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (927)
Q Consensus 417 ~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~ 496 (927)
..|....+|.|...| +..|+..+..+.... ......|.++.. .+| .|..++.+ -|..++..+.+.. .+..
T Consensus 69 ~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~-----~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~ 138 (758)
T 3ott_A 69 VIIDNTYLYMGTDNG-ILVYNYRADRYEQPE-----TDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDT 138 (758)
T ss_dssp EEETTTEEEEEETTE-EEEEETTTTEECCCS-----CCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECH
T ss_pred EEcCCCcEEEEeCCC-eEEEeCCCCEEECcc-----cCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-Eecc
Confidence 345566789888776 678888766554311 112345887765 355 45556555 5778887654322 1111
Q ss_pred ccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEc------cCCCCE
Q 002407 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ------GHLDDV 570 (927)
Q Consensus 497 ~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~------gH~~~V 570 (927)
.........+..+....++.+.+... .+..... ........+. .....|
T Consensus 139 ~~~~l~~~~i~~i~~d~~g~lWigt~-~Gl~~~~------------------------~~~~~~~~~~~~~~~~~~~~~i 193 (758)
T 3ott_A 139 RRNGLPNNTIYSIIRTKDNQIYVGTY-NGLCRYI------------------------PSNGKFEGIPLPVHSSQSNLFV 193 (758)
T ss_dssp HHHCCSCSCEEEEEECTTCCEEEEET-TEEEEEE------------------------TTTTEEEEECCCCCTTCSSCCE
T ss_pred CCCCcCCCeEEEEEEcCCCCEEEEeC-CCHhhCc------------------------cCCCceEEecCCCcccccccee
Confidence 01111223455555555666555432 2211111 1111111110 012347
Q ss_pred EEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-
Q 002407 571 LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND- 647 (927)
Q Consensus 571 ~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~- 647 (927)
.+|...++ +.|..|+. +-|..+|..+++...... ....|.+|.... ++.+. .|+. +-|.+++..+++......
T Consensus 194 ~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lW-igT~-~Gl~~~~~~~~~~~~~~~~ 269 (758)
T 3ott_A 194 NSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDG-NGDLL-AGTD-NGLYVYHNDTTPLQHIIHD 269 (758)
T ss_dssp EEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECT-TCCEE-EEET-TEEEEECCTTSCCEEECCC
T ss_pred EEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcC-CCCEE-EEeC-CceeEEecCCCcEEEEEcC
Confidence 88887765 55666664 468889988775433222 344688888776 66554 4554 458889887766544321
Q ss_pred -------CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 648 -------LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 648 -------~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
....|.++....+|. |.+|+..| +.++.. ..... ..... ..........|.++....++. |.+|+
T Consensus 270 ~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~-~~~~~-~~~~~--~~~~~~~~~~v~~i~~D~~g~--lWiGt 341 (758)
T 3ott_A 270 SRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRY-NSALQ-FIPIS--QITGTGDGNQFYSLFRDSKGF--YWFGG 341 (758)
T ss_dssp TTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECC-CC-CE-EEEHH--HHSCSCCCCBEEEEEECTTCC--EEEEE
T ss_pred CCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-cccccc-CCcee-EEecc--cCCCCCCCceEEEEEEcCCCC--EEEee
Confidence 124688998888775 66676667 544432 22111 11100 000012235688888877774 56666
Q ss_pred CCCcEEEEECCc----ceEEEEee-----cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 721 ADSRIRVVDGID----LVHKFKGF-----RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 721 ~Dg~I~VwD~~~----~~~~~~~~-----~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
.+| +..++... ....+... .....|.++.-..+|++.+ |+. +-|..|+..++
T Consensus 342 ~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~ 402 (758)
T 3ott_A 342 ANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATR 402 (758)
T ss_dssp TTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTT
T ss_pred CCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCC
Confidence 554 66665332 12222210 1123577888777887655 444 56889988764
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=12 Score=44.28 Aligned_cols=158 Identities=9% Similarity=-0.002 Sum_probs=95.3
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-------CCCcEEEEEECCCCCEE-EEEECCCeEEEEECC
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-------LHEMVTAACYTPDGQGA-LVGSYKGSCHLYNTS 679 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-------~~~~V~sla~spdg~~l-~tgs~Dg~I~IwDl~ 679 (927)
..+..|+|.+.++.++++=...+.|+.+++.......... .-..+..+++...+..| ++-+..+.|.+.++.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 3467788888444444444445678888776543322221 22468899999876655 455567889999986
Q ss_pred CCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC--cEEEEECCc-ceEEEEeecCCcceEEEEEecCCC
Q 002407 680 ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS--RIRVVDGID-LVHKFKGFRNTNSQISASLTANGR 756 (927)
Q Consensus 680 ~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg--~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~ 756 (927)
... ...+. ........+|++.|....++++-.... .|...+... ....+. .........++++++++
T Consensus 420 G~~-~~~l~--------~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~-~~~l~~P~gla~D~~~~ 489 (628)
T 4a0p_A 420 GRS-VGVVL--------KGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLF-FSGLSKPIALALDSRLG 489 (628)
T ss_dssp SCE-EEEEE--------ECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEE-CSSCSCEEEEEEETTTT
T ss_pred CCe-EEEEE--------eCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEE-eccCCCccEEEEeCCCC
Confidence 543 22211 123456899999996554555543333 566666422 222222 22344568899999877
Q ss_pred EEEEEE-CCCcEEEEECCCC
Q 002407 757 YVVSAS-EDSYVYVWKYEAE 775 (927)
Q Consensus 757 ~Lasgs-~Dg~I~IWdl~s~ 775 (927)
.|+.+. ..+.|...+++..
T Consensus 490 ~LYw~D~~~~~I~~~~~dG~ 509 (628)
T 4a0p_A 490 KLFWADSDLRRIESSDLSGA 509 (628)
T ss_dssp EEEEEETTTTEEEEEETTSC
T ss_pred EEEEEeCCCCEEEEEeCCCC
Confidence 777665 4577999998654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.65 E-value=2.5 Score=45.05 Aligned_cols=160 Identities=8% Similarity=-0.002 Sum_probs=81.4
Q ss_pred EEEEeCCCCcEEEEEecCCce--EEEEEccCCCCEEEEEECC--------CcEEEEeCCCCcEEEeccCCC---cEEEEE
Q 002407 590 VRLWHLSSKTCLKIFSHSDYV--TCIQFNPVDDRYFISGSLD--------AKVRIWSIPERQVVDWNDLHE---MVTAAC 656 (927)
Q Consensus 590 V~lWDl~t~~~~~~~~h~~~V--~~v~fsp~dg~~L~sgs~D--------g~I~IWDl~t~~~v~~~~~~~---~V~sla 656 (927)
+.+||..+.+....-....+- .+++.. ++.+++.|+.+ ..+.+||+.+.+-......+. ....+.
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 146 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS 146 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence 778898887654332211111 122222 56777777642 358899998876544332221 122222
Q ss_pred ECCCCCEEEEEEC-C-----CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC-----cE
Q 002407 657 YTPDGQGALVGSY-K-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS-----RI 725 (927)
Q Consensus 657 ~spdg~~l~tgs~-D-----g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg-----~I 725 (927)
-+++.++.|+. + ..+.+||+.+.+......+. .....-.++.+ ++ .+++.|+.++ .+
T Consensus 147 --~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p-------~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~ 214 (315)
T 4asc_A 147 --HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ-------TARSLFGATVH--DG-RIIVAAGVTDTGLTSSA 214 (315)
T ss_dssp --ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCS-------SCCBSCEEEEE--TT-EEEEEEEECSSSEEEEE
T ss_pred --ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCC-------CchhceEEEEE--CC-EEEEEeccCCCCccceE
Confidence 46677777776 2 46999999987655432211 11111122222 33 4777777654 47
Q ss_pred EEEECCcceEEEEee-cCCcceEEEEEecCCCEEEEEECC
Q 002407 726 RVVDGIDLVHKFKGF-RNTNSQISASLTANGRYVVSASED 764 (927)
Q Consensus 726 ~VwD~~~~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~D 764 (927)
.+||..+..-..... .......+++ .-++++++.|+.+
T Consensus 215 ~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~ 253 (315)
T 4asc_A 215 EVYSITDNKWAPFEAFPQERSSLSLV-SLVGTLYAIGGFA 253 (315)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEEEEEE
T ss_pred EEEECCCCeEEECCCCCCcccceeEE-EECCEEEEECCcc
Confidence 888865432222211 1111111222 2366777777653
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=93.63 E-value=12 Score=42.27 Aligned_cols=231 Identities=8% Similarity=0.113 Sum_probs=143.2
Q ss_pred ceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEE
Q 002407 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (927)
Q Consensus 430 ~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v 509 (927)
...+.+|+..++...+-+ .-. ..|.-=+|-.+ +.|+-.. +..|.-|++........+......-....|...
T Consensus 85 g~~lQiFnle~K~klks~-----~~~-e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY 156 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAH-----TMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINY 156 (494)
T ss_dssp TTEEEEEETTTTEEEEEE-----ECS-SCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEE
T ss_pred CCeEEEEchHHhhhhcce-----ecC-CCceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEE
Confidence 678999998877533222 222 34555556433 3455543 568999999764433333322222223555555
Q ss_pred ccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC----cEEEEEe
Q 002407 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS----QHLLSSS 585 (927)
Q Consensus 510 ~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd----~~L~Sgs 585 (927)
..+++.+.++..+-.. ....+...-.+|....+.-+.+.||.+....+....+ ..++.+.
T Consensus 157 ~~d~~~kW~~l~GI~~----------------~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~ 220 (494)
T 1bpo_A 157 RTDAKQKWLLLTGISA----------------QQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (494)
T ss_dssp EECTTSSEEEEEEEEE----------------ETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred EECCCCCeEEEEeecc----------------cCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEE
Confidence 5666655544332100 0001112236788888889999999887766666432 3344444
Q ss_pred CC---CcEEEEeCCCC---------cEEEEE-e---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC
Q 002407 586 MD---KTVRLWHLSSK---------TCLKIF-S---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH 649 (927)
Q Consensus 586 ~D---gtV~lWDl~t~---------~~~~~~-~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~ 649 (927)
.. +.++|-++... +.+..+ . ..+...++..++ ....++.-..-|.|++||+.++.++......
T Consensus 221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs 299 (494)
T 1bpo_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRIS 299 (494)
T ss_dssp CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeeccc
Confidence 43 78999998643 111111 1 245667889998 6778888889999999999999998755544
Q ss_pred -CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 650 -EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 650 -~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
+.|...+.......++.....|.|.--.++...++.
T Consensus 300 ~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivp 336 (494)
T 1bpo_A 300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (494)
T ss_dssp SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHH
T ss_pred CCceEEecccCCCCcEEEEccCceEEEEEEccccchh
Confidence 566666666666677777789988888777665543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.35 E-value=10 Score=41.22 Aligned_cols=95 Identities=8% Similarity=-0.007 Sum_probs=57.4
Q ss_pred eCCCcEEEEeCCCCcEEEEEe-----cCCceEEEEEcc--------CCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCc
Q 002407 585 SMDKTVRLWHLSSKTCLKIFS-----HSDYVTCIQFNP--------VDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM 651 (927)
Q Consensus 585 s~DgtV~lWDl~t~~~~~~~~-----h~~~V~~v~fsp--------~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~ 651 (927)
..||.|..++..+|.....+. ...++.. .-.| ..+..+++|+.+|.+...|+.+|+++..+.....
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~ 142 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK 142 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence 578999999988886555444 2222221 1000 0356788999999999999999999876654421
Q ss_pred E--------EEEEEC-----CCCCEEEEEECCCeEEEEECCCC
Q 002407 652 V--------TAACYT-----PDGQGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 652 V--------~sla~s-----pdg~~l~tgs~Dg~I~IwDl~~~ 681 (927)
. .|.... ..+..|+.+..+..+.+.+ +++
T Consensus 143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG 184 (339)
T 2be1_A 143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDG 184 (339)
T ss_dssp CC--------------------CCEEEEEEEEEECEECC-TTS
T ss_pred cccccccccccccccccccccCCCeEEEecceEEEEEEC-CCC
Confidence 1 111111 1245677777777777766 344
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=17 Score=43.03 Aligned_cols=199 Identities=8% Similarity=-0.025 Sum_probs=121.8
Q ss_pred CCEEEEEecCC-cEEEEEe-CCCcEEEEeCCCCcEEEEEec-------CCceEEEEEccCCCCEEEEEECCCcEEEEeCC
Q 002407 568 DDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFSH-------SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs-~DgtV~lWDl~t~~~~~~~~h-------~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~ 638 (927)
..+..|+|.+. +.|+-+. ..+.|+.+++........+.. ...+..|++....++++++-+..+.|.+.++.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 45788999875 6665554 467788888875543333321 24678999998445566676777889999986
Q ss_pred CCcEEEec-cCCCcEEEEEECC-CCCEEEEEECCC--eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 639 ERQVVDWN-DLHEMVTAACYTP-DGQGALVGSYKG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 639 t~~~v~~~-~~~~~V~sla~sp-dg~~l~tgs~Dg--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
........ ..-.....|++.| .|.++++-.... .|...++......... .......+.+++.+....
T Consensus 420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~---------~~~l~~P~gla~D~~~~~ 490 (628)
T 4a0p_A 420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLF---------FSGLSKPIALALDSRLGK 490 (628)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEE---------CSSCSCEEEEEEETTTTE
T ss_pred CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEE---------eccCCCccEEEEeCCCCE
Confidence 54332222 2335789999999 565555543333 5777777644332221 123456789999998775
Q ss_pred EEEEEECCCcEEEEECCc-ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 715 EVLVTSADSRIRVVDGID-LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 715 ~Llsgs~Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
++++-+..+.|..++... ....+.. ........+++.. +.++++=.....|...+..++..
T Consensus 491 LYw~D~~~~~I~~~~~dG~~r~~~~~-~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~ 552 (628)
T 4a0p_A 491 LFWADSDLRRIESSDLSGANRIVLED-SNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREG 552 (628)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEEC-SSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSC
T ss_pred EEEEeCCCCEEEEEeCCCCceEEEEc-CCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCC
Confidence 555556678899998532 2233321 2233456676654 44444444566677777766543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.02 E-value=12 Score=40.79 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=27.0
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~ 488 (927)
...-...+.|+|.|||++|++--..|.|++++...+
T Consensus 28 a~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g 63 (347)
T 3das_A 28 ATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG 63 (347)
T ss_dssp ECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred ecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCC
Confidence 334456889999999998777655888988875433
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=93.00 E-value=3 Score=44.26 Aligned_cols=171 Identities=12% Similarity=0.089 Sum_probs=89.0
Q ss_pred CcEEEEeCCCCcEEEEEe--cC-CceEEEEEccCCCCEEEEEECC-----CcEEEEeCCCCcEEEeccCC---CcEEEEE
Q 002407 588 KTVRLWHLSSKTCLKIFS--HS-DYVTCIQFNPVDDRYFISGSLD-----AKVRIWSIPERQVVDWNDLH---EMVTAAC 656 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~--h~-~~V~~v~fsp~dg~~L~sgs~D-----g~I~IWDl~t~~~v~~~~~~---~~V~sla 656 (927)
..+.+||+.+.+....-. .. .....+.+ ++++++.|+.+ ..+.+||+.+.+-....... .....+.
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 166 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV 166 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE
Confidence 468889988876544322 11 11122222 56777777643 35889999887655433222 1222233
Q ss_pred ECCCCCEEEEEECC-----CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-----CcEE
Q 002407 657 YTPDGQGALVGSYK-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-----SRIR 726 (927)
Q Consensus 657 ~spdg~~l~tgs~D-----g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-----g~I~ 726 (927)
+ +++.++.|+.+ ..+.+||+.+.+......+. ........+.+ + ..+++.|+.+ ..+.
T Consensus 167 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-------~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~ 234 (308)
T 1zgk_A 167 L--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN-------TIRSGAGVCVL--H-NCIYAAGGYDGQDQLNSVE 234 (308)
T ss_dssp E--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS-------SCCBSCEEEEE--T-TEEEEECCBCSSSBCCCEE
T ss_pred E--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCC-------CccccceEEEE--C-CEEEEEeCCCCCCccceEE
Confidence 3 67777777654 45899999887755432211 11111222333 3 3367777654 5688
Q ss_pred EEECCcceEEEEee-cCCcceEEEEEecCCCEEEEEECCC-----cEEEEECCC
Q 002407 727 VVDGIDLVHKFKGF-RNTNSQISASLTANGRYVVSASEDS-----YVYVWKYEA 774 (927)
Q Consensus 727 VwD~~~~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg-----~I~IWdl~s 774 (927)
+||.....-..... .....-.+++. -++++++.|+.++ .|.+||+.+
T Consensus 235 ~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 235 RYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp EEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred EEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCC
Confidence 99965433222111 11111112222 2566777776443 356666654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.69 E-value=2.8 Score=44.06 Aligned_cols=173 Identities=11% Similarity=0.061 Sum_probs=91.1
Q ss_pred CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECC-----CcEEEEeCCCCc---EEEeccCC---CcEEE
Q 002407 588 KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLD-----AKVRIWSIPERQ---VVDWNDLH---EMVTA 654 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~D-----g~I~IWDl~t~~---~v~~~~~~---~~V~s 654 (927)
..+.+||+.+.+....-. ....-.+++. . ++.+++.|+.+ ..+.+||+.+.+ -....... .....
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 468889988876543322 1111122222 2 57777777755 358999998876 44332222 12222
Q ss_pred EEECCCCCEEEEEECC-----CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-----Cc
Q 002407 655 ACYTPDGQGALVGSYK-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-----SR 724 (927)
Q Consensus 655 la~spdg~~l~tgs~D-----g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-----g~ 724 (927)
+.+ +++.++.|+.+ ..+.+||+.+.+........ .....-..+.+ ++ .+++.|+.+ ..
T Consensus 109 ~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-------~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~ 176 (301)
T 2vpj_A 109 TTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ-------TAREGAGLVVA--SG-VIYCLGGYDGLNILNS 176 (301)
T ss_dssp EEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS-------SCCBSCEEEEE--TT-EEEEECCBCSSCBCCC
T ss_pred EEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC-------CCcccceEEEE--CC-EEEEECCCCCCcccce
Confidence 222 67777777654 36899999887755432211 11111122222 33 366776654 45
Q ss_pred EEEEECCcceEEEEee-cCCcceEEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 002407 725 IRVVDGIDLVHKFKGF-RNTNSQISASLTANGRYVVSASED-----SYVYVWKYEAE 775 (927)
Q Consensus 725 I~VwD~~~~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~D-----g~I~IWdl~s~ 775 (927)
+.+||.....-..... .....-.+++ .-++++++.|+.+ ..|.+||+.+.
T Consensus 177 ~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 177 VEKYDPHTGHWTNVTPMATKRSGAGVA-LLNDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEEeCCCCcEEeCCCCCcccccceEE-EECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 8889965433222211 1111111222 2366777777754 35888888764
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.52 E-value=3.9 Score=43.06 Aligned_cols=173 Identities=15% Similarity=0.197 Sum_probs=90.0
Q ss_pred CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCC-----cEEEEeCCCCcEEEeccCC---CcEEEEEE
Q 002407 588 KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDA-----KVRIWSIPERQVVDWNDLH---EMVTAACY 657 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg-----~I~IWDl~t~~~v~~~~~~---~~V~sla~ 657 (927)
..+.+||+.+.+....-. ....-.+++.. ++.+++.|+.++ .+.+||..+.+-....... .....+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE
Confidence 357888888776443322 11111122222 567777777543 5889999887655433322 12222222
Q ss_pred CCCCCEEEEEECCC-----eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-------CcE
Q 002407 658 TPDGQGALVGSYKG-----SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-------SRI 725 (927)
Q Consensus 658 spdg~~l~tgs~Dg-----~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-------g~I 725 (927)
+++.++.|+.++ .+.+||+.+.+......+. ........+.+ ++ .+++.|+.+ ..+
T Consensus 108 --~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-------~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~ 175 (302)
T 2xn4_A 108 --NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMN-------TRRSSVGVGVV--GG-LLYAVGGYDVASRQCLSTV 175 (302)
T ss_dssp --TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCS-------SCCBSCEEEEE--TT-EEEEECCEETTTTEECCCE
T ss_pred --CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCC-------CcccCceEEEE--CC-EEEEEeCCCCCCCccccEE
Confidence 677788887653 5889999887765443221 11111122222 23 366666542 458
Q ss_pred EEEECCcceEEEEee-cCCcceEEEEEecCCCEEEEEECCC-----cEEEEECCCC
Q 002407 726 RVVDGIDLVHKFKGF-RNTNSQISASLTANGRYVVSASEDS-----YVYVWKYEAE 775 (927)
Q Consensus 726 ~VwD~~~~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg-----~I~IWdl~s~ 775 (927)
.+||.....-..... .....-.+++ .-++++++.|+.++ .+.+||+.+.
T Consensus 176 ~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 176 ECYNATTNEWTYIAEMSTRRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred EEEeCCCCcEEECCCCccccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 889865433222111 1111111222 23677777776543 5778887664
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.24 E-value=3.4 Score=43.60 Aligned_cols=179 Identities=8% Similarity=0.082 Sum_probs=95.0
Q ss_pred EEEEeC--CCcEEEEeCCCCcEEEEEe--c-CCceEEEEEccCCCCEEEEEECC----CcEEEEeCCCCcEEEeccCC--
Q 002407 581 LLSSSM--DKTVRLWHLSSKTCLKIFS--H-SDYVTCIQFNPVDDRYFISGSLD----AKVRIWSIPERQVVDWNDLH-- 649 (927)
Q Consensus 581 L~Sgs~--DgtV~lWDl~t~~~~~~~~--h-~~~V~~v~fsp~dg~~L~sgs~D----g~I~IWDl~t~~~v~~~~~~-- 649 (927)
++.|+. ...+.+||..+++....-. . ......+.+ ++.+++.|+.+ ..+.+||+.+.+-.......
T Consensus 15 ~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 15 IALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 445544 3578899998876544322 1 111122222 66777787755 56889999887654433222
Q ss_pred -CcEEEEEECCCCCEEEEEECC------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC-
Q 002407 650 -EMVTAACYTPDGQGALVGSYK------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA- 721 (927)
Q Consensus 650 -~~V~sla~spdg~~l~tgs~D------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~- 721 (927)
.....+.+ +++.++.|+.+ ..+.+||+.+.+......+. .....-..+.+ ++ .+++.|+.
T Consensus 92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p-------~~r~~~~~~~~--~~-~iyv~GG~~ 159 (306)
T 3ii7_A 92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML-------TQRCSHGMVEA--NG-LIYVCGGSL 159 (306)
T ss_dssp CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS-------SCCBSCEEEEE--TT-EEEEECCEE
T ss_pred ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc-------CCcceeEEEEE--CC-EEEEECCCC
Confidence 12222222 67777887765 45999999988755442211 11111122222 33 36666653
Q ss_pred --------CCcEEEEECCcceEEEEe-ecCCcceEEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 002407 722 --------DSRIRVVDGIDLVHKFKG-FRNTNSQISASLTANGRYVVSASED-----SYVYVWKYEAE 775 (927)
Q Consensus 722 --------Dg~I~VwD~~~~~~~~~~-~~~~~~v~sv~fspdg~~Lasgs~D-----g~I~IWdl~s~ 775 (927)
-..+.+||.....-.... ......-.+++. -++++++.|+.+ ..+.+||+.+.
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp SCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 345888986543322211 111111112222 266777777643 35788888764
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=91.78 E-value=5.1 Score=42.58 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=53.7
Q ss_pred EEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECC-------CcEEEEeCCCCcEEEeccCCCcE-EEEEECC
Q 002407 590 VRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLD-------AKVRIWSIPERQVVDWNDLHEMV-TAACYTP 659 (927)
Q Consensus 590 V~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~D-------g~I~IWDl~t~~~v~~~~~~~~V-~sla~sp 659 (927)
+.+||..+.+....-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-......+... ...+...
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 157 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH 157 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE
Confidence 7788888776544322 11111222222 56777777764 24788898887655443332211 1111124
Q ss_pred CCCEEEEEEC------CCeEEEEECCCCeeeee
Q 002407 660 DGQGALVGSY------KGSCHLYNTSENKLQQK 686 (927)
Q Consensus 660 dg~~l~tgs~------Dg~I~IwDl~~~~~~~~ 686 (927)
+++.++.|+. -..+.+||+.+.+....
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~ 190 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL 190 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEEC
Confidence 6777777764 24599999998875544
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=91.70 E-value=2.6 Score=48.01 Aligned_cols=108 Identities=10% Similarity=0.151 Sum_probs=60.9
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc---------CCCcEEEEEECCC---CCEEEEEEC------
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND---------LHEMVTAACYTPD---GQGALVGSY------ 669 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~---------~~~~V~sla~spd---g~~l~tgs~------ 669 (927)
...+.|+|.| +++++++-...+.|++++..+++...... ....+..|+|+|+ +.+|.+...
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999999 88877665433478888866554432211 2456789999995 555555442
Q ss_pred -------CCeEEEEECCCC--eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 670 -------KGSCHLYNTSEN--KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 670 -------Dg~I~IwDl~~~--~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
...|.-|++... .+.....+ +.... .........|+|.|+|. ++++.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i-~~~~p-~~~~H~~~~l~f~pDG~-Lyv~~ 161 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDL-LAGLP-SSKDHQSGRLVIGPDQK-IYYTI 161 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEE-EEEEC-CCSSCCEEEEEECTTSC-EEEEE
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEE-EEcCC-CCCCCCCCeEeECCCCe-EEEEE
Confidence 235666665432 22111111 00000 12234578999999996 44443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=91.55 E-value=14 Score=40.28 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=42.2
Q ss_pred EecCCceEEEEEcc------CCCCEEEEEECCCcEEEEeCCCCcEEE---ec-cCCCcEEEEEECCCCCEEEEE
Q 002407 604 FSHSDYVTCIQFNP------VDDRYFISGSLDAKVRIWSIPERQVVD---WN-DLHEMVTAACYTPDGQGALVG 667 (927)
Q Consensus 604 ~~h~~~V~~v~fsp------~dg~~L~sgs~Dg~I~IWDl~t~~~v~---~~-~~~~~V~sla~spdg~~l~tg 667 (927)
+.+...+..++|.. ..+.+|++....+.|...++..++.+. ++ .....+..+++.|||.++++.
T Consensus 267 ~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 267 WKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp ESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred eCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 33445677888863 146677776667778888877655432 22 223579999999999866654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=91.54 E-value=4.2 Score=45.66 Aligned_cols=139 Identities=9% Similarity=0.114 Sum_probs=90.0
Q ss_pred CCCcEEEEeCCCCcEEEEEecC----C-ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc------------EEEecc-
Q 002407 586 MDKTVRLWHLSSKTCLKIFSHS----D-YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ------------VVDWND- 647 (927)
Q Consensus 586 ~DgtV~lWDl~t~~~~~~~~h~----~-~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~------------~v~~~~- 647 (927)
.++.||.-++......+.+... . .|..+..+| +|++|+..+ +..|.|-.++.+. ....+.
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l 116 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSI 116 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEc
Confidence 3478888888755445555433 2 588899999 999888875 4689998887321 011111
Q ss_pred ------CCCcEEEEEECCC---CCEEEEEECCCeEEEEECCCCeeeeeccccccc--ccccCCCCCeEEEEEcCCCCcEE
Q 002407 648 ------LHEMVTAACYTPD---GQGALVGSYKGSCHLYNTSENKLQQKSPINLQN--KKKRSHQRKITGFQFAPGSSSEV 716 (927)
Q Consensus 648 ------~~~~V~sla~spd---g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~--~~~~~h~~~Vtsl~fspdg~~~L 716 (927)
....|..+.|+|- +..|++-..|+.|++||+........ .+.... .........|.+++|.+++- .|
T Consensus 117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~l-TL 194 (452)
T 3pbp_A 117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGL-TL 194 (452)
T ss_dssp GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSS-CE
T ss_pred CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCc-EE
Confidence 2467999999994 56899999999999999986321111 111000 00112336789999999654 45
Q ss_pred EEEE--CCCcEEEE
Q 002407 717 LVTS--ADSRIRVV 728 (927)
Q Consensus 717 lsgs--~Dg~I~Vw 728 (927)
.+.+ ..|.|+-.
T Consensus 195 Yvl~~t~~GDIYAl 208 (452)
T 3pbp_A 195 YCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEecCCCCCEEEE
Confidence 5544 77888764
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=91.52 E-value=0.47 Score=48.57 Aligned_cols=101 Identities=13% Similarity=0.099 Sum_probs=66.2
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCCCcE------EEEEec--CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTC------LKIFSH--SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~------~~~~~h--~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~ 640 (927)
.+.+++|+|++.|... .++.++-.+..+.+. -..+.. -....++.|.| ++.+.++ .||.|.-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 5679999999888777 778777777655221 122210 01157899999 8877766 5699988876543
Q ss_pred cEEEecc--------CCCcEEEEEECCCCCEEEEEECCCeEEE
Q 002407 641 QVVDWND--------LHEMVTAACYTPDGQGALVGSYKGSCHL 675 (927)
Q Consensus 641 ~~v~~~~--------~~~~V~sla~spdg~~l~tgs~Dg~I~I 675 (927)
....+.. .=..+..|.+.|+|.+.++. ++.++-
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 2212111 11467999999999877777 777543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.32 E-value=9.1 Score=40.47 Aligned_cols=178 Identities=15% Similarity=0.126 Sum_probs=93.7
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEe--cC-CceEEEEEccCCCCEEEEEEC----C-------CcEEEEeCCCCcEEEec
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFS--HS-DYVTCIQFNPVDDRYFISGSL----D-------AKVRIWSIPERQVVDWN 646 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~--h~-~~V~~v~fsp~dg~~L~sgs~----D-------g~I~IWDl~t~~~v~~~ 646 (927)
++.|+ ..+.+||..+++-.. .. .. .......... ++.+++.|+. + ..+.+||..+.+-....
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 44555 578999999887543 22 11 1222222233 6788888874 1 12778898887655433
Q ss_pred cCCCc---EEEEEECCCCCEEEEEECC--------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 647 DLHEM---VTAACYTPDGQGALVGSYK--------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 647 ~~~~~---V~sla~spdg~~l~tgs~D--------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
..... ...+.+ +++.++.|+.+ ..+.+||+.+.+......+. .....-..+. . ++ .+
T Consensus 84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p-------~~r~~~~~~~-~-~~-~i 151 (315)
T 4asc_A 84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP-------YVVYGHTVLS-H-MD-LV 151 (315)
T ss_dssp CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCS-------SCCBSCEEEE-E-TT-EE
T ss_pred CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCC-------CcccceeEEE-E-CC-EE
Confidence 32221 122222 56777777642 45999999988654432211 1111112222 2 23 36
Q ss_pred EEEEEC-C-----CcEEEEECCcceEEEEeecC-CcceEEEEEecCCCEEEEEECCC-----cEEEEECCCC
Q 002407 716 VLVTSA-D-----SRIRVVDGIDLVHKFKGFRN-TNSQISASLTANGRYVVSASEDS-----YVYVWKYEAE 775 (927)
Q Consensus 716 Llsgs~-D-----g~I~VwD~~~~~~~~~~~~~-~~~v~sv~fspdg~~Lasgs~Dg-----~I~IWdl~s~ 775 (927)
++.|+. + ..+.+||..+..-....... .....+++ .-++++++.|+.++ .+.+||+.+.
T Consensus 152 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 152 YVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp EEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred EEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCC
Confidence 677765 2 46888986543322211111 11111222 23677777777654 4778888764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=90.97 E-value=6.6 Score=50.53 Aligned_cols=228 Identities=14% Similarity=0.173 Sum_probs=127.0
Q ss_pred cCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC-cEEEeccCC-----
Q 002407 576 SKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-QVVDWNDLH----- 649 (927)
Q Consensus 576 spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~-~~v~~~~~~----- 649 (927)
+|...+++--...++.|||+++.+.++.+.....|.-=.|-. .+.|+..+ +..|..|++... .++..+..+
T Consensus 74 nP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~ 150 (1630)
T 1xi4_A 74 NPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAG 150 (1630)
T ss_pred CCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcchhccc
Confidence 454334433347899999999999999888777777777763 44454443 467999999642 333333322
Q ss_pred CcEEEEEECCCCCEEEEEE-------CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc--CCCCcEEEEEE
Q 002407 650 EMVTAACYTPDGQGALVGS-------YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA--PGSSSEVLVTS 720 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs-------~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs--pdg~~~Llsgs 720 (927)
..|..-..+++.++++..+ ..|.+.+|....+..... .+|......+.+. +....++..+.
T Consensus 151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~i----------egha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI----------EGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhh----------hHhHhhhheeccCCCCCCceEEEEEE
Confidence 4677777788999877643 357888998876543221 1333222222221 11111111111
Q ss_pred ---CCCcEEEEECCcc---eEEEE-----e-e---cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccc--
Q 002407 721 ---ADSRIRVVDGIDL---VHKFK-----G-F---RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKS-- 783 (927)
Q Consensus 721 ---~Dg~I~VwD~~~~---~~~~~-----~-~---~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~-- 783 (927)
..++++|.+.... ...+. . + .......++..++.-..+..-+.-|.|++||+.++...-..+-
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~ 300 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG 300 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccC
Confidence 1267888774321 01110 0 0 0112234567777777888889999999999999876533321
Q ss_pred cceeeeeeeecCCCeEEEEecCCceeEEeecCCc
Q 002407 784 ITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTY 817 (927)
Q Consensus 784 ~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~ 817 (927)
-+..... .....+..+++.-.|.+....+....
T Consensus 301 ~~iF~~~-~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 301 ETIFVTA-PHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred CceEEec-cCCCCCceEEEcCCceEEEEEEccch
Confidence 1111111 11223445566666666555554443
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=90.55 E-value=5.6 Score=42.06 Aligned_cols=173 Identities=12% Similarity=0.068 Sum_probs=90.0
Q ss_pred CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEEC----C-----CcEEEEeCCCCcEEEeccCC---CcEE
Q 002407 588 KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSL----D-----AKVRIWSIPERQVVDWNDLH---EMVT 653 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~----D-----g~I~IWDl~t~~~v~~~~~~---~~V~ 653 (927)
..+.+||..+.+....-. ....-.+++.. ++.+++.|+. + ..+.+||+.+.+-....... ....
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 116 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 116 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence 357888888776544321 11111122222 5667777765 2 45889999887655433222 1222
Q ss_pred EEEECCCCCEEEEEECC-----CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-----C
Q 002407 654 AACYTPDGQGALVGSYK-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-----S 723 (927)
Q Consensus 654 sla~spdg~~l~tgs~D-----g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-----g 723 (927)
.+.+ +++.++.|+.+ ..+.+||+.+.+......+. .....-..+.+ ++ .+++.|+.+ .
T Consensus 117 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-------~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~ 184 (308)
T 1zgk_A 117 VGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML-------TRRIGVGVAVL--NR-LLYAVGGFDGTNRLN 184 (308)
T ss_dssp EEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS-------SCCBSCEEEEE--TT-EEEEECCBCSSCBCC
T ss_pred EEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC-------ccccceEEEEE--CC-EEEEEeCCCCCCcCc
Confidence 2333 67777777643 46889999887765443221 11111222223 33 366776654 4
Q ss_pred cEEEEECCcceEEEEee-cCCcceEEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 002407 724 RIRVVDGIDLVHKFKGF-RNTNSQISASLTANGRYVVSASED-----SYVYVWKYEAE 775 (927)
Q Consensus 724 ~I~VwD~~~~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~D-----g~I~IWdl~s~ 775 (927)
.+.+||.....-..... .......+++. -++++++.|+.+ ..+.+||+.+.
T Consensus 185 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 185 SAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred eEEEEeCCCCeEeeCCCCCCccccceEEE-ECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 58888865433222111 11111112222 267777777654 45888888764
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=89.66 E-value=18 Score=38.24 Aligned_cols=174 Identities=10% Similarity=0.101 Sum_probs=89.1
Q ss_pred cEEEEeCCCCcEEEEE-ec-CCceEEEEEccCCCCEEEEEEC----CC-------cEEEEeCCCCcEEEeccCCC---cE
Q 002407 589 TVRLWHLSSKTCLKIF-SH-SDYVTCIQFNPVDDRYFISGSL----DA-------KVRIWSIPERQVVDWNDLHE---MV 652 (927)
Q Consensus 589 tV~lWDl~t~~~~~~~-~h-~~~V~~v~fsp~dg~~L~sgs~----Dg-------~I~IWDl~t~~~v~~~~~~~---~V 652 (927)
.+.+||..+++....- .. ........... ++.+++.|+. ++ .+.+||..+.+-........ ..
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 3788999888755421 11 11122222233 6778888873 12 17788988876554432221 22
Q ss_pred EEEEECCCCCEEEEEECC-------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC----
Q 002407 653 TAACYTPDGQGALVGSYK-------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA---- 721 (927)
Q Consensus 653 ~sla~spdg~~l~tgs~D-------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~---- 721 (927)
..+.+ +++.++.|+.+ ..+.+||+.+.+......+... ...| +++. .++ .+++.|+.
T Consensus 104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~-----~~~~-~~~-~iyv~GG~~~~~ 171 (318)
T 2woz_A 104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK---VYGH-----NVIS-HNG-MIYCLGGKTDDK 171 (318)
T ss_dssp EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC---EESC-----EEEE-ETT-EEEEECCEESSS
T ss_pred ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc---cccc-----EEEE-ECC-EEEEEcCCCCCC
Confidence 22222 67777777754 3588999988776544322110 1111 1222 233 36666653
Q ss_pred --CCcEEEEECCcceEEEEe-ecCCcceEEEEEecCCCEEEEEECC-----CcEEEEECCCCC
Q 002407 722 --DSRIRVVDGIDLVHKFKG-FRNTNSQISASLTANGRYVVSASED-----SYVYVWKYEAES 776 (927)
Q Consensus 722 --Dg~I~VwD~~~~~~~~~~-~~~~~~v~sv~fspdg~~Lasgs~D-----g~I~IWdl~s~~ 776 (927)
-..+.+||.....-.... ........+++. -++++++.|+.+ ..+.+||+.+..
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 245889996543322211 111111112222 366777777643 347788887653
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.63 E-value=0.68 Score=50.70 Aligned_cols=112 Identities=8% Similarity=-0.033 Sum_probs=73.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecC--CceEEEEEc--cCCCCEEEEE-ECCCcEEEEeCCCCcEEEeccCCC--
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHS--DYVTCIQFN--PVDDRYFISG-SLDAKVRIWSIPERQVVDWNDLHE-- 650 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~--~~V~~v~fs--p~dg~~L~sg-s~Dg~I~IWDl~t~~~v~~~~~~~-- 650 (927)
++.++.++.||.|.-+|..+|+.+..+... .++....-. +.++..++.. ..||.|..++..++..........
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 367999999999999999999999988744 233221110 1122333333 589999999998875442222111
Q ss_pred ---cEEE---EEE-C----CCCCEEEEEECCCeEEEEECCCCeeeeeccc
Q 002407 651 ---MVTA---ACY-T----PDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (927)
Q Consensus 651 ---~V~s---la~-s----pdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i 689 (927)
++.. ..+ . ..+..+++|+.+|.+...|+.+|+.+..+..
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1110 000 0 1455789999999999999999999888654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=89.32 E-value=19 Score=39.36 Aligned_cols=115 Identities=10% Similarity=0.048 Sum_probs=66.3
Q ss_pred ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC---CCcEEEEEE--
Q 002407 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG---SSSEVLVTS-- 720 (927)
Q Consensus 646 ~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd---g~~~Llsgs-- 720 (927)
...-...+.|+|.|+|.++++--..|.|++++..+++......+. ............|+|+|+ +..++++-+
T Consensus 28 a~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~---~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 28 ATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVP---GVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp ECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECT---TCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred ecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccC---ceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 334467889999999987666655899999987665542211110 011234567899999995 332333322
Q ss_pred CCCcEEEEECCc----------ceEEEEeec--CCcceEEEEEecCCCEEEEEEC
Q 002407 721 ADSRIRVVDGID----------LVHKFKGFR--NTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 721 ~Dg~I~VwD~~~----------~~~~~~~~~--~~~~v~sv~fspdg~~Lasgs~ 763 (927)
.++.|.-|.... ....+.... .......+.|.|||.+.++.+.
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence 344555554211 222333221 1223456899999988777653
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.08 E-value=4.6 Score=43.62 Aligned_cols=94 Identities=10% Similarity=0.116 Sum_probs=51.4
Q ss_pred CcEEEEeCCCCcEEEEEecC-C-c-eEEEEEccCCCCEEEEEECC-----------------------------------
Q 002407 588 KTVRLWHLSSKTCLKIFSHS-D-Y-VTCIQFNPVDDRYFISGSLD----------------------------------- 629 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h~-~-~-V~~v~fsp~dg~~L~sgs~D----------------------------------- 629 (927)
..+.+||+.+.+-...-... . . -.+++. . ++++++.|+.+
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED 163 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred ccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence 46889999887654432211 1 1 112222 3 77888888765
Q ss_pred ----CcEEEEeCCCCcEEEeccCC--CcE-EEEEECCCCCEEEEEEC------CCeEEEEEC--CCCeee
Q 002407 630 ----AKVRIWSIPERQVVDWNDLH--EMV-TAACYTPDGQGALVGSY------KGSCHLYNT--SENKLQ 684 (927)
Q Consensus 630 ----g~I~IWDl~t~~~v~~~~~~--~~V-~sla~spdg~~l~tgs~------Dg~I~IwDl--~~~~~~ 684 (927)
..+.+||+.+.+-....... ... .+++. -++++++.|+. ...+.+||+ .+....
T Consensus 164 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~ 232 (357)
T 2uvk_A 164 YFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN 232 (357)
T ss_dssp GCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEE
T ss_pred cCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEE
Confidence 46889999887644332222 111 22222 25667777654 345777887 544433
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=88.13 E-value=24 Score=38.55 Aligned_cols=159 Identities=8% Similarity=-0.056 Sum_probs=79.0
Q ss_pred CCEEEEEecC--CcEEEEEeCCC----cEEEEeCCCCcEEEEEe---------------cCCceEEEEEccCC-CCEEEE
Q 002407 568 DDVLDLSWSK--SQHLLSSSMDK----TVRLWHLSSKTCLKIFS---------------HSDYVTCIQFNPVD-DRYFIS 625 (927)
Q Consensus 568 ~~V~~l~~sp--d~~L~Sgs~Dg----tV~lWDl~t~~~~~~~~---------------h~~~V~~v~fsp~d-g~~L~s 625 (927)
..|.+|++.| .+.|..+...+ .|...+ ..++.-..+. ....|.+|++.|.+ ...|.+
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4588899988 46666666555 444332 2222212111 11257789998744 556666
Q ss_pred EECCCcEEEEeCCCCcEEEecc-------------------CCCcEEEEEECCC-CCEEEEEECCCeEEEEECCCCeeee
Q 002407 626 GSLDAKVRIWSIPERQVVDWND-------------------LHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 626 gs~Dg~I~IWDl~t~~~v~~~~-------------------~~~~V~sla~spd-g~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
+...+.|...+-....-..... ....+.+|.+.|. ...|+++...+.|...+- .++...
T Consensus 134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~ 212 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWK 212 (394)
T ss_dssp EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCE
T ss_pred EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCce
Confidence 6666666554322222122110 1235789999883 445666655555544432 222222
Q ss_pred eccccccccccc----CCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 686 KSPINLQNKKKR----SHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 686 ~~~i~~~~~~~~----~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
............ .....+.++++.|.....|+++...+ |...+
T Consensus 213 ~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 213 PLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp ECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred ECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 111000000000 00235889999997545677776555 44443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=87.58 E-value=42 Score=37.86 Aligned_cols=223 Identities=10% Similarity=0.117 Sum_probs=136.5
Q ss_pred eEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCC-CcEEEEEe-c----CCceEEEEEccCCCCEEE
Q 002407 551 TVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSS-KTCLKIFS-H----SDYVTCIQFNPVDDRYFI 624 (927)
Q Consensus 551 ~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t-~~~~~~~~-h----~~~V~~v~fsp~dg~~L~ 624 (927)
.+|++..+....-.....+|..=.|-....|+-.+ +..|+-|++.. ..+++.|. | ...|..-..++ +.++++
T Consensus 89 QiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~ 166 (494)
T 1bpo_A 89 QIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLL 166 (494)
T ss_dssp EEEETTTTEEEEEEECSSCCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEE
T ss_pred EEEchHHhhhhcceecCCCceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEE
Confidence 45666554433333334567666776665554443 46899999974 46777776 2 34677777788 777766
Q ss_pred EEEC-------CCcEEEEeCCCCcEEEeccCCCcEEEEEECCC---CCEEEEEECC---CeEEEEECCCC---e-eeeec
Q 002407 625 SGSL-------DAKVRIWSIPERQVVDWNDLHEMVTAACYTPD---GQGALVGSYK---GSCHLYNTSEN---K-LQQKS 687 (927)
Q Consensus 625 sgs~-------Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spd---g~~l~tgs~D---g~I~IwDl~~~---~-~~~~~ 687 (927)
..+. .|.+.+|..+.+......+|-.....+.+.-+ .+.++.+... +.++|.++... . .....
T Consensus 167 l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk 246 (494)
T 1bpo_A 167 LTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK 246 (494)
T ss_dssp EEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCE
T ss_pred EEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccce
Confidence 4432 46788999877655444443332222222111 1233333332 78999998543 1 11010
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
...+.... .....-..++..++.-. ++..-+.-|.|++||..+....+...-....|...+......=++.....|.|
T Consensus 247 ~vdv~fpp-e~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 247 AVDVFFPP-EAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp EEECCCCT-TSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred eeeeeCCc-ccccCceeEEEecccCC-EEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 11111100 12344456788888665 78889999999999999888888887777777776766666667777789988
Q ss_pred EEEECCCCCC
Q 002407 768 YVWKYEAESR 777 (927)
Q Consensus 768 ~IWdl~s~~~ 777 (927)
.--.++....
T Consensus 325 l~v~v~e~~i 334 (494)
T 1bpo_A 325 LSVCVEEENI 334 (494)
T ss_dssp EEEEECTTTH
T ss_pred EEEEEccccc
Confidence 8888876543
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=86.16 E-value=19 Score=38.87 Aligned_cols=150 Identities=11% Similarity=0.076 Sum_probs=88.2
Q ss_pred CcEEEEEeCCCcEEEEeCCCCc-----EEE--EEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCC--CCc-------
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKT-----CLK--IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP--ERQ------- 641 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~-----~~~--~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~--t~~------- 641 (927)
+..+++.+..|.|+--.+..-. -+. .+...+.+..+.... ....|+..+..|.+..+... .-.
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~ 187 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGRATS 187 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence 4789999999999988765321 122 122345566555555 55678888889998888766 211
Q ss_pred EEEe--ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 642 VVDW--NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 642 ~v~~--~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
=+.. +...+.|.++...+++.++++.+..|.++.-.+........-.......+.......+..+....+.. .++..
T Consensus 188 Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~-~i~l~ 266 (327)
T 3uc1_A 188 GVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDS-ELYAV 266 (327)
T ss_dssp CEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTC-EEEEE
T ss_pred CeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCc-cEEEE
Confidence 1122 23345677777777777999999999999887654332211000000001112133455544443333 57777
Q ss_pred ECCCcEEEEE
Q 002407 720 SADSRIRVVD 729 (927)
Q Consensus 720 s~Dg~I~VwD 729 (927)
+.+|.+..++
T Consensus 267 T~~G~~ir~~ 276 (327)
T 3uc1_A 267 TSGGGVIRTA 276 (327)
T ss_dssp EGGGCEEEEE
T ss_pred cCCCeEEEEe
Confidence 7777777776
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=85.42 E-value=26 Score=41.90 Aligned_cols=149 Identities=15% Similarity=0.221 Sum_probs=81.5
Q ss_pred CcEEEEEeCC----CcEEEEeCCCCcEEEEE-e-------cC-CceEEEEEccCCCCEEEEEECCC------cEEEEeCC
Q 002407 578 SQHLLSSSMD----KTVRLWHLSSKTCLKIF-S-------HS-DYVTCIQFNPVDDRYFISGSLDA------KVRIWSIP 638 (927)
Q Consensus 578 d~~L~Sgs~D----gtV~lWDl~t~~~~~~~-~-------h~-~~V~~v~fsp~dg~~L~sgs~Dg------~I~IWDl~ 638 (927)
+..++.|+.+ ..+.+||+.+++....- . .. ..-..+.+.. ++.+++.|+.++ .+.+||+.
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeCC
Confidence 3455566543 45888998887655443 1 11 1123333322 466777776543 47889988
Q ss_pred CCcEEEeccCC--CcEEEEEECCCCCEEEEEECCC--eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 639 ERQVVDWNDLH--EMVTAACYTPDGQGALVGSYKG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 639 t~~~v~~~~~~--~~V~sla~spdg~~l~tgs~Dg--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
+.+-....... ..-.+++...+++.++.|+.++ .+.+||+.+............ ........++.+......
T Consensus 477 t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~----p~~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEF----FQNSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp TTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGG----GGSCCBSCEEEEETTTTE
T ss_pred CCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCC----CCcccceeEEEEeCCCCE
Confidence 87654433222 1222333334888888887755 699999998875543221000 011111233445554344
Q ss_pred EEEEEEC--C-----CcEEEEECC
Q 002407 715 EVLVTSA--D-----SRIRVVDGI 731 (927)
Q Consensus 715 ~Llsgs~--D-----g~I~VwD~~ 731 (927)
+++.|+. + ..+.+||..
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~ 576 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYD 576 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEEC
T ss_pred EEEECCcCCCCCeeeCcEEEEEcc
Confidence 6777765 2 458888854
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=83.32 E-value=26 Score=45.18 Aligned_cols=231 Identities=9% Similarity=0.130 Sum_probs=128.4
Q ss_pred ceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEE
Q 002407 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (927)
Q Consensus 430 ~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v 509 (927)
...+.+|+..++...+.+ .- ...|.-=+|-.+. .|+-.+ +..|.-|++........+......-....|...
T Consensus 85 g~~lQiFnl~~k~klks~-----~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY 156 (1630)
T 1xi4_A 85 GKTLQIFNIEMKSKMKAH-----TM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINY 156 (1630)
T ss_pred CCeEEEeehHHhhhhccc-----cc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEe
Confidence 678999998777543322 11 2356555665443 344443 568999999753333222222111123444444
Q ss_pred ccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEE-Ee
Q 002407 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLS-SS 585 (927)
Q Consensus 510 ~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~S-gs 585 (927)
..+++...++..+-... ...+...-.++....+.-+.+.||.+....+..... ..|++ +.
T Consensus 157 ~~d~~~kW~~l~gi~~~----------------~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 157 RTDAKQKWLLLTGISAQ----------------QNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred eeCCCCCeEEEEeeccC----------------CCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEE
Confidence 55555544433221100 001111225666677777778888776655554321 22332 22
Q ss_pred C---CCcEEEEeCCCC---------cEEEEE-e---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC
Q 002407 586 M---DKTVRLWHLSSK---------TCLKIF-S---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH 649 (927)
Q Consensus 586 ~---DgtV~lWDl~t~---------~~~~~~-~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~ 649 (927)
. .+.++|-++... +.+..+ . ..+...++..++ ....+...+.-|.|.+||+.++.++......
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~~ris 299 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRIS 299 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEEEEecCceEEEEecccchhhhhcccc
Confidence 2 268888888543 111111 1 234456788888 6667778888999999999999887654443
Q ss_pred -CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 650 -EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 650 -~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
+.|...+.......++.....|.|.-..+....++.
T Consensus 300 ~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~ 336 (1630)
T 1xi4_A 300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (1630)
T ss_pred CCceEEeccCCCCCceEEEcCCceEEEEEEccchhhh
Confidence 455555555554556666677877777666655443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 927 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-21 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-13 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-20 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-20 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-16 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-15 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-15 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-14 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-13 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-11 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-12 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.003 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-09 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 8e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 8e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-09 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 9e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.004 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 4e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.001 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 1e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.002 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.001 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 93.3 bits (230), Expect = 5e-21
Identities = 58/324 (17%), Positives = 110/324 (33%), Gaps = 36/324 (11%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509
+ ++ H I+++ + D R L SA +D + +W + + +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI--------------P 94
Query: 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDD 569
S + + N++ + +L + + GH
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG---------NVRVSRELAGHTGY 145
Query: 570 VLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD 629
+ + +++SS D T LW + + F+ D R F+SG+ D
Sbjct: 146 LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 630 AKVRIWSIPERQVVDWNDLHEM-VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688
A ++W + E HE + A C+ P+G GS +C L+ ++
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF-------DLRAD 258
Query: 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQ 746
L + IT F+ S +L D V D + G + N
Sbjct: 259 QELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAG--HDNRV 315
Query: 747 ISASLTANGRYVVSASEDSYVYVW 770
+T +G V + S DS++ +W
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.7 bits (174), Expect = 7e-14
Identities = 34/192 (17%), Positives = 64/192 (33%), Gaps = 28/192 (14%)
Query: 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML 506
+ H G + S+ + D R S D +W V E + GH + +
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-----TGHESDI 229
Query: 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH 566
P + + + S D + A + S
Sbjct: 230 NAICFFPNGNAFA--------------------TGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFI 624
+ + +S+SKS + LL+ D +W + + H + V+C+ D
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVA 328
Query: 625 SGSLDAKVRIWS 636
+GS D+ ++IW+
Sbjct: 329 TGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.3 bits (173), Expect = 1e-13
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 6/127 (4%)
Query: 556 SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY---VT 611
+F GH D+ + + + + S D T RL+ L + L +SH + +T
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 612 CIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE-MVTAACYTPDGQGALVGSYK 670
+ F+ R ++G D +W + H+ V+ T DG GS+
Sbjct: 275 SVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Query: 671 GSCHLYN 677
++N
Sbjct: 334 SFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.1 bits (131), Expect = 2e-08
Identities = 42/306 (13%), Positives = 87/306 (28%), Gaps = 63/306 (20%)
Query: 521 KHLDNHLEKKRRGRSINRKSLS----LDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576
L E+ + RK+ + + V + + + +GHL + + W
Sbjct: 5 DQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWG 64
Query: 577 K-SQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAK--- 631
S+ L+S+S D + +W + + S +V + P + G +
Sbjct: 65 TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124
Query: 632 ------------------------------------------VRIWSIPERQVVDWNDLH 649
+Q +
Sbjct: 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709
V + PD + + G+ S L++ E +Q H+ I F
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF---------TGHESDINAICFF 235
Query: 710 PGSSSEVLVTSADSRIRV--VDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV 767
P + + S D+ R+ + + + S S + +GR +++ +D
Sbjct: 236 P-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294
Query: 768 YVWKYE 773
VW
Sbjct: 295 NVWDAL 300
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.4 bits (111), Expect = 4e-06
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 442 DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVW 483
D + + H+ + + + DG +A+ D + +W
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 91.4 bits (225), Expect = 4e-20
Identities = 74/337 (21%), Positives = 122/337 (36%), Gaps = 29/337 (8%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE 514
H + +KFS DG YLA+ + V++V + L + AN PE
Sbjct: 61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA---------ANKDPE 110
Query: 515 PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS 574
+ S + + + + + + K + QGH D+ L
Sbjct: 111 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD 170
Query: 575 WSKSQHLLSSSMD-KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVR 633
+ S L S +TVR+W L + C S D VT + +P D +Y +GSLD VR
Sbjct: 171 YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 230
Query: 634 IWSIPERQVVDWNDLHEM--------VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685
+W +V+ D V + +T DGQ + GS S L+N +
Sbjct: 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290
Query: 686 KSPINLQNKKKRS---HQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGF 740
S + + H+ + + +L S D + D + +G
Sbjct: 291 DSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 349
Query: 741 RNTNSQI----SASLTANGRYVVSASEDSYVYVWKYE 773
RN+ + +SL + S D +WKY+
Sbjct: 350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.4 bits (155), Expect = 2e-11
Identities = 44/310 (14%), Positives = 101/310 (32%), Gaps = 78/310 (25%)
Query: 538 RKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSS 597
+K + +++ + D + H V + +S L++ +KT +++ +S
Sbjct: 33 KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSD 92
Query: 598 KTCLKIFS-------------------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638
+ + S Y+ + F+P D ++ +G+ D +RIW I
Sbjct: 93 GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIE 151
Query: 639 ERQVVDWNDLHEMVTAACYT---------------------------------------- 658
R++V HE +
Sbjct: 152 NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA 211
Query: 659 ---PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715
DG+ GS + ++++ L ++ ++ +N+ H+ + F
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVER--LDSENESGTGHKDSVYSVVFTR-DGQS 268
Query: 716 VLVTSADSRIRVVD------------GIDLVHKFKGFRNTNSQISASLTANGRYVVSASE 763
V+ S D +++ + + + + +S + T N Y++S S+
Sbjct: 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 328
Query: 764 DSYVYVWKYE 773
D V W +
Sbjct: 329 DRGVLFWDKK 338
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.6 bits (132), Expect = 1e-08
Identities = 27/174 (15%), Positives = 55/174 (31%), Gaps = 24/174 (13%)
Query: 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489
VRV + + H S++S+ F+ DG+ + S D + +W + +
Sbjct: 228 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 287
Query: 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVP 549
K + + + + D ++ S S D V+
Sbjct: 288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN--DEYI-----------LSGSKDRGVL- 333
Query: 550 ETVFALSD-KPICSFQGHLDDVLDLSWSKS-------QHLLSSSMDKTVRLWHL 595
+ P+ QGH + V+ ++ + + S D R+W
Sbjct: 334 --FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 89.4 bits (220), Expect = 6e-20
Identities = 59/346 (17%), Positives = 105/346 (30%), Gaps = 63/346 (18%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509
+ H + + F + SA ED I VW + + L GH + +
Sbjct: 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-----KGHTDSVQDI 65
Query: 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDD 569
+ L+ D ++ +++ V
Sbjct: 66 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI---------------- 109
Query: 570 VLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSL 628
H++S+S DKT+++W + + C+K F H ++V ++ N D S S
Sbjct: 110 -----MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSN 163
Query: 629 DAKVRIWSIPERQVVDWNDLHE---------------------MVTAACYTPDGQGALVG 667
D VR+W + ++ H G L G
Sbjct: 164 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 223
Query: 668 SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727
S + +++ S H + G F G +L + D +RV
Sbjct: 224 SRDKTIKMWDVSTGMCLM---------TLVGHDNWVRGVLFHSG-GKFILSCADDKTLRV 273
Query: 728 VDGID--LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWK 771
D + + + + S YVV+ S D V VW+
Sbjct: 274 WDYKNKRCMKTLNA--HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 79.4 bits (194), Expect = 1e-16
Identities = 43/232 (18%), Positives = 90/232 (38%), Gaps = 9/232 (3%)
Query: 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML 506
+ + H+ ++ S+ +G ++ SA D I +W+V GH +
Sbjct: 92 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-----TGHREWV 146
Query: 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH 566
+ + + T ++ D + + L +H V E + + S
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEA 205
Query: 567 LDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFIS 625
S LLS S DKT+++W +S+ CL H ++V + F+ ++ +S
Sbjct: 206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILS 264
Query: 626 GSLDAKVRIWSIPERQVVDWNDLHE-MVTAACYTPDGQGALVGSYKGSCHLY 676
+ D +R+W ++ + + HE VT+ + + GS + ++
Sbjct: 265 CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 69.8 bits (169), Expect = 3e-13
Identities = 36/270 (13%), Positives = 83/270 (30%), Gaps = 54/270 (20%)
Query: 558 KPICSFQGHLDDVLDLSWSK-SQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQF 615
+ GH V + + ++S+S D T+++W + + H+D V I F
Sbjct: 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67
Query: 616 NPV-----------------------------------------DDRYFISGSLDAKVRI 634
+ + + +S S D +++
Sbjct: 68 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127
Query: 635 WSIPERQVVDWNDLHEMVTAAC-YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQN 693
W + V H DG S + ++ + + + + +
Sbjct: 128 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187
Query: 694 KKKRSHQRKITGFQFAPGSSSEVLVT----------SADSRIRVVDGIDLVHKFKGFRNT 743
+ S + + + + SE + S D I++ D + +
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD 247
Query: 744 NSQISASLTANGRYVVSASEDSYVYVWKYE 773
N + G++++S ++D + VW Y+
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYK 277
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.4 bits (142), Expect = 6e-10
Identities = 38/331 (11%), Positives = 93/331 (28%), Gaps = 16/331 (4%)
Query: 591 RLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE 650
+ W + H VT + F+P +S S DA +++W H
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHT 59
Query: 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710
D + + G +++ ++ + +
Sbjct: 60 ---------DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM 110
Query: 711 GSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVW 770
+ ++ S D I++ + + +G + S S D V VW
Sbjct: 111 PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 170
Query: 771 KYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTP 830
+ + + + + +I +T S +
Sbjct: 171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230
Query: 831 VEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTARNRSPRTSLD 890
+ ++S + G+ N + G + + + +S + V +N+ +L+
Sbjct: 231 MWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFI---LSCADDKTLRVWDYKNKRCMKTLN 286
Query: 891 ISNG--ISSSISAWGMVIVTAGLRGEIRAYQ 919
S +VT + ++ ++
Sbjct: 287 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.9 bits (107), Expect = 1e-05
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 442 DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484
D + + AH + S+ F Y+ + D + VW+
Sbjct: 275 DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.6 bits (189), Expect = 5e-16
Identities = 47/294 (15%), Positives = 105/294 (35%), Gaps = 20/294 (6%)
Query: 450 QEIQAHNGSIWSIK-FSLDGRYLASAGEDCVIHVWQVVESERKGEL-------LEKQEDG 501
Q I + + + D + + S D I +W E K L L Q D
Sbjct: 6 QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65
Query: 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC 561
+ + ++ + ++ + N L R + + + A+ D
Sbjct: 66 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125
Query: 562 SFQGHL------DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQF 615
+ +++ ++++S+S D+T+++W+ S+ + + + + I
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF--VRTLNGHKRGIAC 183
Query: 616 NPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675
DR +SGS D +R+W I + + HE + + + G+Y G +
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIV-SGAYDGKIKV 242
Query: 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729
++ + L + H ++ QF +++ +S D I + D
Sbjct: 243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (136), Expect = 2e-09
Identities = 31/242 (12%), Positives = 74/242 (30%), Gaps = 17/242 (7%)
Query: 558 KPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFN 616
+ I V L + Q ++S D T+++W ++ C +I + H+ V C+Q+
Sbjct: 6 QRIHCRSETSKGVYCLQYD-DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY- 63
Query: 617 PVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676
D I + +H + + S S ++
Sbjct: 64 ---DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 120
Query: 677 NTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHK 736
+ + + + ++ + + + + V + + + V
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC-------EFVRT 173
Query: 737 FKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQ 796
G + + + R VVS S D+ + +W E + + F +
Sbjct: 174 LNGHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK 229
Query: 797 DV 798
+
Sbjct: 230 RI 231
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (95), Expect = 3e-04
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 423 VSFHGQERVRVRQY--GKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVI 480
VS +++V + + + H+G ++ ++F D + S+ D I
Sbjct: 232 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTI 289
Query: 481 HVW 483
+W
Sbjct: 290 LIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (94), Expect = 4e-04
Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 22/149 (14%)
Query: 446 LYKCQEIQAHNGSIWSIKF-SLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN 504
C+ ++ NG I R + S D I +W + G L E
Sbjct: 165 TSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI----ECGACLRVLEGHEEL 220
Query: 505 MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ 564
+ + + D ++ +++ ++ + + +
Sbjct: 221 V---RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA-------------GTLCLRTLV 264
Query: 565 GHLDDVLDLSWSKSQHLLSSSMDKTVRLW 593
H V L + ++SSS D T+ +W
Sbjct: 265 EHSGRVFRLQFD-EFQIVSSSHDDTILIW 292
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.2 bits (188), Expect = 1e-15
Identities = 39/351 (11%), Positives = 93/351 (26%), Gaps = 28/351 (7%)
Query: 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS 512
QA I IK L D + V++ + +L Q + + LL N
Sbjct: 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL--LQSLRYKHPLLCCNFI 65
Query: 513 PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLD 572
K ++ D +++
Sbjct: 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125
Query: 573 LSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKV 632
+ ++ + + L + + R + + +++V
Sbjct: 126 VIDPRNYG------------DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMN-NSQV 172
Query: 633 RIWSIPERQVV-----DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687
+ + +P + + +++ A + +G S G + + S
Sbjct: 173 QWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232
Query: 688 PINLQNKKKR------SHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFR 741
+ R + + +F+P + +D I + + K K F
Sbjct: 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWN-LQTRKKIKNFA 290
Query: 742 NTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEH 792
N + + + A+ D ++ + SI + YE+
Sbjct: 291 KFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSIYIIFDYEN 341
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.3 bits (152), Expect = 4e-11
Identities = 25/241 (10%), Positives = 61/241 (25%), Gaps = 11/241 (4%)
Query: 563 FQGHLDDVLDLSWS-KSQHLLSSSMDKTVRLWHLSSK----TCLKIFSHSDYVTCIQFNP 617
Q D + D+ LL +S D ++ ++ + L+ + + C F
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 618 VDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYN 677
D G++ ++ + L + S
Sbjct: 67 NTDLQIYVGTVQGEILKV--DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124
Query: 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF 737
+ + ++ + +SS ++V +S+++
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184
Query: 738 KGFRNTNSQ----ISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHF 793
+ + A L +S D V V ++ + S +
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244
Query: 794 H 794
Sbjct: 245 L 245
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.4 bits (186), Expect = 2e-15
Identities = 46/350 (13%), Positives = 110/350 (31%), Gaps = 42/350 (12%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509
+ ++ H+ + + G + S +D + VW V + L GH + +
Sbjct: 10 KVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-----VGHTGGVWSS 63
Query: 510 NGSP-----EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ 564
T + K + + + ++ H+ V D + +
Sbjct: 64 QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWD 123
Query: 565 ----------GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQ 614
+ + ++S + D V++W ++TCL
Sbjct: 124 IETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY-- 181
Query: 615 FNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCH 674
D + +SGSLD +R+W + + H+ +T + + G+ +
Sbjct: 182 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT-SGMELKDNILVSGNADSTVK 240
Query: 675 LYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GID 732
+++ + Q + HQ +T QF + V+ +S D +++ D +
Sbjct: 241 IWDIKTGQCLQ------TLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGE 291
Query: 733 LVHKFKGFRNTNSQ---ISASLTANGRYVVSASED----SYVYVWKYEAE 775
+ + S + S + + + V ++ +
Sbjct: 292 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 341
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.8 bits (161), Expect = 3e-12
Identities = 37/240 (15%), Positives = 72/240 (30%), Gaps = 23/240 (9%)
Query: 558 KPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFN 616
K +GH D V+ ++S S D T+++W + CL+ H+ V Q
Sbjct: 7 KSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 66
Query: 617 PVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676
+ E T C + + GS + ++
Sbjct: 67 DNIIISGS----TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122
Query: 677 NTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLV 734
+ + ++ + + + V+ + D ++V D +
Sbjct: 123 DIETGQCLHVLMGHVAAVRCVQYDGRR------------VVSGAYDFMVKVWDPETETCL 170
Query: 735 HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFH 794
H +G N + +G +VVS S D+ + VW E + S
Sbjct: 171 HTLQGHTNRVYSLQ----FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 226
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.3 bits (178), Expect = 2e-14
Identities = 49/317 (15%), Positives = 102/317 (32%), Gaps = 32/317 (10%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE 514
H + ++ S R++ + G+ CV VW + K + + N + P+
Sbjct: 50 HGEVVCAVTISNPTRHVYTGGKGCV-KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 515 PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS 574
+L + L R L A+S F
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC-------- 160
Query: 575 WSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRI 634
D + +W L ++T ++ F D +G LD VR
Sbjct: 161 -----------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209
Query: 635 WSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK 694
W + E + + +D + + Y P G+ VG + + + ++
Sbjct: 210 WDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP----------DKY 259
Query: 695 KKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTAN 754
+ H+ + +FA + T D+ + + ++S +S ++ +
Sbjct: 260 QLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWR-TPYGASIFQSKESSSVLSCDISVD 317
Query: 755 GRYVVSASEDSYVYVWK 771
+Y+V+ S D V++
Sbjct: 318 DKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.5 bits (168), Expect = 4e-13
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 561 CSFQGHLDDVLDLSWSK-SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVD 619
H VL L ++ + +S+ D + W + S V + D
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV-D 317
Query: 620 DRYFISGSLDAKVRIWSI 637
D+Y ++GS D K ++ +
Sbjct: 318 DKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.5 bits (150), Expect = 7e-11
Identities = 31/262 (11%), Positives = 70/262 (26%), Gaps = 18/262 (6%)
Query: 433 VRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG 492
V+ + S + + + I S K DG L GE + +W + +
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133
Query: 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETV 552
+ L ++ S S + + + + + +
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193
Query: 553 FALSDK----------------PICSFQGHLDDVLDLSWSK-SQHLLSSSMDKTVRLWHL 595
+ L + + L V + H+
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253
Query: 596 SSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAA 655
+ ++ H V ++F ++F+S D + W P + + V +
Sbjct: 254 NKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC 312
Query: 656 CYTPDGQGALVGSYKGSCHLYN 677
+ D + + GS +Y
Sbjct: 313 DISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (124), Expect = 1e-07
Identities = 34/250 (13%), Positives = 75/250 (30%), Gaps = 44/250 (17%)
Query: 565 GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTC------LKIFSHSDYVTCIQFNPV 618
H + V ++ S + + V++W +S L + +Y+ + P
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP- 107
Query: 619 DDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTA------------------------ 654
D I G + + IW + +L A
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 655 -----------ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703
DG + S G+ +N ++ + ++ +I
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227
Query: 704 TGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASE 763
+ P + E L +S V ++ K++ + + +S G++ VS +
Sbjct: 228 FSLGYCP--TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK 285
Query: 764 DSYVYVWKYE 773
D+ + W+
Sbjct: 286 DNLLNAWRTP 295
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 5e-07
Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 16/130 (12%)
Query: 554 ALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCI 613
A+ KP SF D + L+ + + R + +H + V +
Sbjct: 6 AMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT--------LNHGEVVCAV 57
Query: 614 QFNPVDDRYFISGSLDAKVRIWSIPERQ------VVDWNDLHEMVTAACYTPDGQGALVG 667
+ R+ +G V++W I +D + + + PDG +VG
Sbjct: 58 TISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115
Query: 668 SYKGSCHLYN 677
+ +++
Sbjct: 116 GEASTLSIWD 125
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 4e-06
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486
+ S+ S S+D +Y+ + D V++V+
Sbjct: 298 ASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 3e-04
Identities = 10/73 (13%), Positives = 25/73 (34%)
Query: 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIH 481
G+ + ++ H + S+KF+ G++ S G+D +++
Sbjct: 231 GYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 290
Query: 482 VWQVVESERKGEL 494
W+ +
Sbjct: 291 AWRTPYGASIFQS 303
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 64.6 bits (155), Expect = 9e-12
Identities = 44/323 (13%), Positives = 91/323 (28%), Gaps = 35/323 (10%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509
Q HN +I ++ S DG+ L SA + I+ W + G D H M+
Sbjct: 6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI----STGISNRVFPDVHATMI--- 58
Query: 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDD 569
T + + DH+ V + D
Sbjct: 59 ------TGIKTTSKGDL-----------FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQ 101
Query: 570 VLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD 629
L L+ S + ++ K + ++ T S +C+ + + G
Sbjct: 102 PLGLAVSADGDIAVAACYKHIAIYSHGKLTE---VPISYNSSCVALSNDKQFVAVGGQDS 158
Query: 630 AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689
+H + + LV + + + + N +
Sbjct: 159 KVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN 218
Query: 690 NLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV--VDGIDLVHKFKGFRNTNSQI 747
+ + + + S D+ + V ++ + S +
Sbjct: 219 SWTFHTAKVACVSWSPDNVRLATGSL------DNSVIVWNMNKPSDHPIIIKGAHAMSSV 272
Query: 748 SASLTANGRYVVSASEDSYVYVW 770
++ + N +VSA +DS + W
Sbjct: 273 NSVIWLNETTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.1 bits (120), Expect = 2e-07
Identities = 11/67 (16%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 575 WSKSQHLLSSSMDKTVRLWHLSSKTCLKIF---SHSDYVTCIQFNPVDDRYFISGSLDAK 631
+ L + S+D +V +W+++ + I +H+ ++ +S D+
Sbjct: 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSN 291
Query: 632 VRIWSIP 638
++ W++P
Sbjct: 292 IKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.6 bits (90), Expect = 0.001
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQV 485
AH S + L+ + SAG+D I W V
Sbjct: 260 PIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.4 bits (87), Expect = 0.003
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 540 SLSLDHMVVPETVFALSDKPICSFQGHLDDVL-DLSWSKSQHLLSSSMDKTVRLWHLS 596
+ SLD+ V+ + SD PI H + + W ++S+ D ++ W++
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.7 bits (145), Expect = 3e-10
Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 6/125 (4%)
Query: 562 SFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDD 620
+ +GH+ V+ + ++++ + DK +R++ +K L S H V +++
Sbjct: 7 TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--G 64
Query: 621 RYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGA---LVGSYKGSCHLYN 677
+SGS D VR+W I + + H + + + GS + H++
Sbjct: 65 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124
Query: 678 TSENK 682
+
Sbjct: 125 LPKES 129
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.3 bits (131), Expect = 2e-08
Identities = 9/67 (13%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 573 LSWSKSQHLLSSSMDKTVRLWHLSSKTCLK--IFSHSDYVTCIQFNPVDDRYFISGSLDA 630
++ S ++L S + +++L S + I +D + + F + D
Sbjct: 288 TTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDG 345
Query: 631 KVRIWSI 637
+ + +
Sbjct: 346 QSFLEIL 352
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 24/330 (7%), Positives = 95/330 (28%), Gaps = 34/330 (10%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG 511
++ H S+ + + Y+ + +D +I V+ + + +L GH +
Sbjct: 8 LRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQL-----SGHDGGVWALKY 61
Query: 512 SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL 571
+ +S + + V + + +
Sbjct: 62 AHGGILVS--------------------GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 101
Query: 572 DLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAK 631
+ + +++++ S D T+ +W L ++ + + P ++ YF+
Sbjct: 102 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161
Query: 632 VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN- 690
+ ++ + + ++ + + S +++ ++ +
Sbjct: 162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM 221
Query: 691 -------LQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNT 743
+ + + S+ + SA + + + K +
Sbjct: 222 DTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHH 281
Query: 744 NSQISASLTANGRYVVSASEDSYVYVWKYE 773
+ + + ++ + ++ ++
Sbjct: 282 TNLSAITTFYVSDNILVSGSENQFNIYNLR 311
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 43/327 (13%), Positives = 103/327 (31%), Gaps = 23/327 (7%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509
++ H+G +W++K++ G L S D + VW + + ++
Sbjct: 47 LQLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 105
Query: 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDD 569
+ S DN L + + + +H +
Sbjct: 106 KNIKYIVTGSR---DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 162
Query: 570 VLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD 629
+ ++S S D T+ +W ++ CL I S + + IS S+D
Sbjct: 163 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD 222
Query: 630 AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689
+RIW + +++ H + D L + + + +
Sbjct: 223 TTIRIWDLENGELMYTLQGHTALVGLLRLSD------------KFLVSAAADGSIRGWDA 270
Query: 690 NLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD---GIDLVHKFKGFRNTNSQ 746
N ++K H ++ S +LV+ ++++ + + G + +
Sbjct: 271 NDYSRKFSYHHTNLSAITTFY-VSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWS 329
Query: 747 ISASLTANGRYVVSASEDSYVYVWKYE 773
++ V + +D ++ +
Sbjct: 330 VNFK---GKTLVAAVEKDGQSFLEILD 353
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (142), Expect = 6e-10
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 575 WSKSQHLLSSSMDKTVRLWHLSSKTCLKIF---SHSDYVTCIQFNPVDDRYFISGSLDAK 631
W SQ + D T+R+W +++ C++ + + + IS SLD
Sbjct: 260 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 319
Query: 632 VRIWSI 637
+ + +
Sbjct: 320 LNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.3 bits (118), Expect = 6e-07
Identities = 40/323 (12%), Positives = 80/323 (24%), Gaps = 20/323 (6%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE 514
+ + +A V + + + K + Q GH + ++
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAF-VRCLDDGDSKVPPV-VQFTGHGSSVVTT----- 68
Query: 515 PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS 574
SP +L + + D ++ FQ + D+S
Sbjct: 69 -VKFSPIKGSQYLCSGDESGKVIVWGWTFDKE-----SNSVEVNVKSEFQVLAGPISDIS 122
Query: 575 WSKSQHL---LSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAK 631
W + D S L S D
Sbjct: 123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 182
Query: 632 VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL 691
++ +D + G + + + + KS L
Sbjct: 183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG-SDRKISCFDGKSGEFL 241
Query: 692 QNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISA 749
+ + + F + S + AD+ IRV D V K+ +
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 301
Query: 750 SLTANG-RYVVSASEDSYVYVWK 771
+ A G ++S S D + ++
Sbjct: 302 GVVATGNGRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.1 bits (107), Expect = 1e-05
Identities = 35/313 (11%), Positives = 80/313 (25%), Gaps = 42/313 (13%)
Query: 405 SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF 464
S+++ S + +++ + VR + + + + + ++KF
Sbjct: 14 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT--GHGSSVVTTVKF 71
Query: 465 S--LDGRYLASAGEDCVIHVWQVVESERKGELL---EKQEDGHLNMLLLANGSPEPTSLS 519
S +YL S E + VW + + + + + + E L
Sbjct: 72 SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 131
Query: 520 PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF---------------- 563
+ L
Sbjct: 132 VVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP 191
Query: 564 ----------QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCI 613
V D+ +S ++ ++ K+ + D +
Sbjct: 192 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV 251
Query: 614 QFN-----PVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM---VTAACYTPDGQGAL 665
Q +D + F + DA +R+W + + V L + G G +
Sbjct: 252 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311
Query: 666 V-GSYKGSCHLYN 677
+ S G+ + Y
Sbjct: 312 ISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.9 bits (104), Expect = 3e-05
Identities = 31/262 (11%), Positives = 65/262 (24%), Gaps = 20/262 (7%)
Query: 558 KPICSFQGHLDD-VLDLSWS---KSQHLLSSSMDKTVRLWHLSSKTCLKIF--------- 604
P+ F GH V + +S SQ+L S V +W +
Sbjct: 53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ 112
Query: 605 SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGA 664
+ ++ I ++ R + G ++ +
Sbjct: 113 VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRP 172
Query: 665 LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724
+ G + + S + + K+ S R + + V S
Sbjct: 173 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 232
Query: 725 IRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSI 784
G L + I A + + + D+ + VW +
Sbjct: 233 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV-------TTSKC 285
Query: 785 TVTHSYEHFHCQDVSVAIPWPG 806
+ + + V + G
Sbjct: 286 VQKWTLDKQQLGNQQVGVVATG 307
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.4 bits (139), Expect = 1e-09
Identities = 18/130 (13%), Positives = 44/130 (33%), Gaps = 15/130 (11%)
Query: 556 SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQF 615
D+ + + GH + L+ + L+S S D + W SS HS+ + +
Sbjct: 2 HDEVLKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSMHQ----DHSNLIVSLDN 54
Query: 616 NPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675
+ + + + + ++ A DG A++ + L
Sbjct: 55 SK--------AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLIL 106
Query: 676 YNTSENKLQQ 685
+ + + ++
Sbjct: 107 QSFTGDIIKS 116
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.8 bits (127), Expect = 3e-08
Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 561 CSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSS-KTCLKIFS-HSDYVTCIQFNPV 618
+ + + + + S+D + ++ + +K + H D V + +
Sbjct: 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET- 268
Query: 619 DDRYFISGSLDAKVRIWSI 637
+S DA ++ W++
Sbjct: 269 -PSTLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.7 bits (119), Expect = 3e-07
Identities = 36/323 (11%), Positives = 74/323 (22%), Gaps = 45/323 (13%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509
+ I HN I ++ + L S D I W H N
Sbjct: 7 KTISGHNKGITALTVN----PLISGSYDGRIMEWSS----------SSMHQDHSN----- 47
Query: 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDD 569
I S + +
Sbjct: 48 -------------------------LIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQ 82
Query: 570 VLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD 629
S + + D + + + +K + + + + +
Sbjct: 83 PKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNT 142
Query: 630 AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689
+V S E L + +P G G LY+ +++
Sbjct: 143 IQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA 202
Query: 690 NLQNKKKRSHQRKITGFQFAPGSSSEVLVT-SADSRIRVVDGIDLVHKFKGFRNTNSQIS 748
+K + +++ T S D+ I + + K ++
Sbjct: 203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVN 262
Query: 749 ASLTANGRYVVSASEDSYVYVWK 771
L +VS+ D+ + W
Sbjct: 263 NLLWETPSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.3 bits (97), Expect = 2e-04
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486
+ + AH + ++ + L S+G D I W VV
Sbjct: 252 KALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 287
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.7 bits (140), Expect = 1e-09
Identities = 39/326 (11%), Positives = 85/326 (26%), Gaps = 19/326 (5%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509
E++ HNG + + ++ D + + G D +VW + K L+ + +
Sbjct: 45 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARC---V 101
Query: 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDD 569
+P + + + + + TV +L P
Sbjct: 102 RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 161
Query: 570 VLDLS-WSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL 628
+S + T + + S S + S
Sbjct: 162 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH 221
Query: 629 DAKVRIWSI-PERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687
D+ V + + V + A + + + + L+ +
Sbjct: 222 DSTVCLADADKKMAVATLASETLPLLAVTFITESS-LVAAGHDCFPVLFTYDSAAGKLSF 280
Query: 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGF-RNTNSQ 746
L K+ S + G ++ + D + +N+ SQ
Sbjct: 281 GGRLDVPKQSSQR----------GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQ 330
Query: 747 ISAS--LTANGRYVVSASEDSYVYVW 770
IS A + D + +W
Sbjct: 331 ISVLSGGKAKCSQFCTTGMDGGMSIW 356
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 556 SDKPICSFQGHLDDVLDLSWSK-SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQ 614
S SF G LD S + ++DK ++ H + V+ I
Sbjct: 273 SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQIS 332
Query: 615 FNPVDD---RYFISGSLDAKVRIWSI 637
F + +D + IW +
Sbjct: 333 VLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.2 bits (97), Expect = 3e-04
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707
L E ++ + D + H+Y S NK Q + + H ++TG
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-------KEHNGQVTGVD 58
Query: 708 FAPGSSSEVLVTSADSRIRVVDGIDLVHKF 737
+AP S+ ++ D V K
Sbjct: 59 WAP-DSNRIVTCGTDRNAYVWTLKGRTWKP 87
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.6 bits (93), Expect = 8e-04
Identities = 20/156 (12%), Positives = 45/156 (28%), Gaps = 34/156 (21%)
Query: 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML 506
+ + + ++ F + +A+ G DC ++ + K
Sbjct: 234 MAVATLASETLPLLAVTFITESSLVAA-GHDCFPVLFTYDSAAGKLSF------------ 280
Query: 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH 566
LD + +RG + + +LD + + H
Sbjct: 281 -------------GGRLDVPKQSSQRGLTARERFQNLDKKA---SSEGSAAAGAGLDSLH 324
Query: 567 LDDVLDLSWS-----KSQHLLSSSMDKTVRLWHLSS 597
+ V +S K ++ MD + +W + S
Sbjct: 325 KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 58.0 bits (138), Expect = 3e-09
Identities = 25/328 (7%), Positives = 73/328 (22%), Gaps = 37/328 (11%)
Query: 454 AHNGSIWSIKFSLDGRYLASAGED--CVIHVWQVVESERKGELLEKQEDGHLNMLLLANG 511
I ++ D + G + ++ + ++ + +L +
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK------AEKFEENLGNVFAMGV 93
Query: 512 SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL 571
+ + P + + I F +
Sbjct: 94 DRNGKFAVVANDRFEIMTVDL------------ETGKPTVIERSREAMITDFTISDNSRF 141
Query: 572 DLSWSKSQHLLSS-SMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA 630
+H + + + + ++ + + + + + F+ D + S +
Sbjct: 142 IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA-DSKNLYYLSYRS 200
Query: 631 KVRIWSIPERQVVDWNDLHEM--------VTAACYTPDGQGALVGSYKGSCHLYNTSENK 682
P + G Y + +S
Sbjct: 201 LDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN 260
Query: 683 LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRN 742
+ S + ++ + D V K
Sbjct: 261 VDPGDYR--MIIPLESSILIYSVPVHGEFAAY-YQGAPEKGVLLKYD----VKTRKVTEV 313
Query: 743 TNSQISASLTANGRYVVSASEDSYVYVW 770
N+ L+A+ + V+ +D +Y +
Sbjct: 314 KNNLTDLRLSADRKTVMVRKDDGKIYTF 341
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 52.6 bits (124), Expect = 1e-07
Identities = 25/207 (12%), Positives = 59/207 (28%), Gaps = 20/207 (9%)
Query: 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508
N ++ F D + L + V + ++ L
Sbjct: 171 IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS-----FEVVSKPFVIPL 225
Query: 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568
GSP PT L P+ + + P V + I + +
Sbjct: 226 IPGSPNPTKLVPR--------SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277
Query: 569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS 627
+ + + + + + ++ K+ + +T ++ + D + +
Sbjct: 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR---KVTEVKNNLTDLRLSA-DRKTVMVRK 333
Query: 628 LDAKVRIWSI--PERQVVDWNDLHEMV 652
D K+ + + PE + D +V
Sbjct: 334 DDGKIYTFPLEKPEDERTVETDKRPLV 360
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 40.2 bits (92), Expect = 8e-04
Identities = 11/110 (10%), Positives = 27/110 (24%), Gaps = 2/110 (1%)
Query: 378 SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG 437
T + + R S G
Sbjct: 234 KLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQG 293
Query: 438 KSCKDLTALY--KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQV 485
K + Y K +++ ++ ++ S D + + +D I+ + +
Sbjct: 294 APEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.2 bits (136), Expect = 4e-09
Identities = 33/361 (9%), Positives = 87/361 (24%), Gaps = 50/361 (13%)
Query: 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS 512
+AH+ I+S+ + S D + VW + +K ++ L +
Sbjct: 11 KAHDADIFSVSAC--NSFTVSCSGDGYLKVWD-NKLLDNENPKDKSYSHFVHKSGLHHVD 67
Query: 513 PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLD 572
+ + ++ + +
Sbjct: 68 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETK---KVIFEKLDLLDSDMKKHSFWA 124
Query: 573 LSWSKS------QHLLSSSMDKTVRLWHLSS-------------------KTCLKIFSHS 607
L W S L+++ + T +W T + S
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
Query: 608 DYVTCIQFNPVDDRYFISGSLDAKVRI-------WSIPERQVVDWNDLHEMVTAACYTPD 660
+ T + + +G + V+I + + + ++P
Sbjct: 185 QFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242
Query: 661 GQGALVGSYKGSCHL---YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS---S 714
G + S Y T + + + + + + + + +
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302
Query: 715 EVLVTSADSRIRV--VDGIDLVHKFKGFRNTNSQISASLT--ANGRYVVSASEDSYVYVW 770
+ D ++R V + + + L +G + ++
Sbjct: 303 TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK 362
Query: 771 K 771
K
Sbjct: 363 K 363
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.0 bits (133), Expect = 1e-08
Identities = 12/89 (13%), Positives = 28/89 (31%), Gaps = 14/89 (15%)
Query: 562 SFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF-------------SHSD 608
+ + H D+ +S + +S S D +++W H D
Sbjct: 9 AGKAHDADIFSVSAC-NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67
Query: 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
+ I+ + + + S + + I
Sbjct: 68 VLQAIERDAFELCLVATTSFSGDLLFYRI 96
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.5 bits (129), Expect = 2e-08
Identities = 34/303 (11%), Positives = 66/303 (21%), Gaps = 37/303 (12%)
Query: 405 SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF 464
+ +G T + + V + +L + H+ K
Sbjct: 14 RTARGTAVVLGNTPAGDKIQYCNGTSVYTV-------PVGSLTDTEIYTEHSHQTTVAKT 66
Query: 465 SLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN-------------------- 504
S G Y AS + +W ++ + G +
Sbjct: 67 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER 126
Query: 505 -MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF 563
+ + + R D V
Sbjct: 127 FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG 186
Query: 564 QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPV----- 618
+ S+ D T+ L++ T +F V
Sbjct: 187 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 246
Query: 619 --DDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACY--TPDGQGALVGSYKGSCH 674
D S S D ++IW++ +V + + Q + S G +
Sbjct: 247 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN 306
Query: 675 LYN 677
N
Sbjct: 307 FVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.3 bits (92), Expect = 9e-04
Identities = 27/266 (10%), Positives = 58/266 (21%), Gaps = 49/266 (18%)
Query: 556 SDKPICSFQGHLDDVLDLSWSKSQHLL-SSSMDKTVRLWHLSSKTCLKIF---SHSDYVT 611
S + H S S + S + VR+W + T + S V
Sbjct: 47 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK 106
Query: 612 CIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKG 671
I ++ R G + + + + N +
Sbjct: 107 DISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS 166
Query: 672 -----------------------------------------SCHLYNTSENKLQQKSPIN 690
N +
Sbjct: 167 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 226
Query: 691 LQNKKKRSHQRKITGFQFAPGSSSEVLVT-SADSRIRV--VDGIDLVHKFKGFRNTNSQI 747
++ ++ + F + + SAD I++ V + + Q
Sbjct: 227 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ 286
Query: 748 SASLTANGRYVVSASEDSYVYVWKYE 773
+ + +VS S + ++ E
Sbjct: 287 L-GIIWTKQALVSISANGFINFVNPE 311
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 51.7 bits (122), Expect = 2e-07
Identities = 16/244 (6%), Positives = 53/244 (21%), Gaps = 10/244 (4%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509
S++S S DG+ + + V + E+ + +
Sbjct: 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF 141
Query: 510 NGSPEPTSLSPKHLDNHLEKKRRGRSIN------RKSLSLDHMVVPETVFALSDKPICSF 563
+ + + ++ +L L +
Sbjct: 142 PMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 201
Query: 564 QG----HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVD 619
+ + Q ++ + L +
Sbjct: 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 261
Query: 620 DRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679
+ ++ + + +R+++ +L + G +G ++N
Sbjct: 262 KDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321
Query: 680 ENKL 683
+
Sbjct: 322 TLEK 325
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 38.2 bits (87), Expect = 0.004
Identities = 27/326 (8%), Positives = 77/326 (23%), Gaps = 30/326 (9%)
Query: 464 FSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE--PTSLSPK 521
Y+ +HV V + + G ++ + +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 522 HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL 581
L+ + N S+ + + A+S + +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSF-AISPDGKEVYATVNPTQRLNDHYVVKP- 121
Query: 582 LSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638
+ ++ + K V ++ D +++G K+ + +
Sbjct: 122 ------PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-DGSLYVAGPDIYKMDVKTGK 174
Query: 639 ERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNT----------SENKLQQKSP 688
+ + + +A ++ S + + L
Sbjct: 175 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS 234
Query: 689 INLQNKKKRSHQRKITG---FQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNS 745
++L+ K + + F + +R+ D K N +
Sbjct: 235 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ--RKLIKAANLDH 292
Query: 746 QI-SASLTANGRYVVSASEDSYVYVW 770
+ G + + + V+
Sbjct: 293 TYYCVAFDKKGDKLYLGGTFNDLAVF 318
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 49.4 bits (117), Expect = 1e-06
Identities = 41/333 (12%), Positives = 91/333 (27%), Gaps = 29/333 (8%)
Query: 460 WSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLS 519
+ S GRYL G D +++ + E K ++ E
Sbjct: 65 HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI 124
Query: 520 PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ 579
G ++ K + + + + + + + +
Sbjct: 125 AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY--------RPE 176
Query: 580 HLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGS-LDAKVRIWS 636
+++ + L + LK ++ + RYFI+ + K+ +
Sbjct: 177 FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG-SHRYFITAANARNKLVVID 235
Query: 637 IPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKK 696
E ++V D + G + H+ + + I +
Sbjct: 236 TKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD------DSVALIGTDPEGH 289
Query: 697 RSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTA-NG 755
+ KI A G S + T +S+ VD N ++IS S+ +
Sbjct: 290 PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVD---------ATLNPEAEISGSVAVFDI 340
Query: 756 RYVVSASEDSYVYVWKYEAESRPSRSKSITVTH 788
+ + D + + + V
Sbjct: 341 KAMTGDGSDPEFKTLPIAEWAGITEGQP-RVVQ 372
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 46.7 bits (110), Expect = 1e-05
Identities = 24/196 (12%), Positives = 63/196 (32%), Gaps = 11/196 (5%)
Query: 587 DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI------PER 640
+ L S+ + V + + RY D KV + +
Sbjct: 41 AGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVA 99
Query: 641 QVVDWNDLHEMVTAACYTPDGQGALVGSY-KGSCHLYNTSENKLQ--QKSPINLQNKKKR 697
++ ++ + T+ + + A+ G+Y + + + + Q + ++++
Sbjct: 100 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 159
Query: 698 SHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH-KFKGFRNTNSQISASLTANGR 756
+ ++ + ++ +I +VD DL + K L + R
Sbjct: 160 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR 219
Query: 757 YVVSASEDSYVYVWKY 772
Y ++A+ V
Sbjct: 220 YFITAANARNKLVVID 235
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.6 bits (114), Expect = 2e-06
Identities = 13/196 (6%), Positives = 42/196 (21%), Gaps = 7/196 (3%)
Query: 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLL 507
++ I + ++ DG L G D + + + + + +
Sbjct: 126 SRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQP-- 183
Query: 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL 567
+ + R + + T+ + + +
Sbjct: 184 --DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL--LTMDLETGEMAMREVRIM 239
Query: 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS 627
D + + + + L +K + + D G
Sbjct: 240 DVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVST-DGSTVWLGG 298
Query: 628 LDAKVRIWSIPERQVV 643
+ + +
Sbjct: 299 ALGDLAAYDAETLEKK 314
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.1 bits (110), Expect = 6e-06
Identities = 22/247 (8%), Positives = 55/247 (22%), Gaps = 7/247 (2%)
Query: 443 LTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
+ S++ S DG+ LA + + + L + +
Sbjct: 68 TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR 127
Query: 503 LNMLLLANG------SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS 556
+ + + L D H+ G + K + L+
Sbjct: 128 RKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA 187
Query: 557 DKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFN 616
G + + ++ + L + V
Sbjct: 188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTA 247
Query: 617 PVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676
+ + + + + + L + + DG +G G Y
Sbjct: 248 VNPAKTRA-FGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAY 306
Query: 677 NTSENKL 683
+ +
Sbjct: 307 DAETLEK 313
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 27/285 (9%), Positives = 68/285 (23%), Gaps = 33/285 (11%)
Query: 579 QHLLSSSMDKTVRLWHLSSKTCLKIF---SHSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635
++L+ + + + K+ P + + + +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 636 SIPERQVVDWNDLHE------MVTAACYTPDGQGALVGSYKGSC--HLYNTSENKLQQKS 687
+ + + DL + A +PDG+ + + ++
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKG-------- 739
L +K R+IT +A S++ D + + LV
Sbjct: 122 AETLSRRKAFEAPRQITMLAWAR-DGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180
Query: 740 -------------FRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITV 786
+ + + + + + E R I
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240
Query: 787 THSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPV 831
+ + A V +++ L+ + H V
Sbjct: 241 VFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSV 285
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.2 bits (92), Expect = 9e-04
Identities = 11/85 (12%), Positives = 23/85 (27%)
Query: 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR 469
R + + + Y + S +S+ S DG
Sbjct: 233 MREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGS 292
Query: 470 YLASAGEDCVIHVWQVVESERKGEL 494
+ G + + E+KG++
Sbjct: 293 TVWLGGALGDLAAYDAETLEKKGQV 317
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 44.6 bits (104), Expect = 4e-05
Identities = 22/243 (9%), Positives = 63/243 (25%), Gaps = 21/243 (8%)
Query: 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW----- 635
++ + L SK +K+ V + + RY + DA++ +
Sbjct: 35 SVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAK 93
Query: 636 -SIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK 694
++ + + ++ + + + G+Y E ++
Sbjct: 94 EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST---- 149
Query: 695 KKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTAN 754
+ + P ++ S + +V+ + ++ +
Sbjct: 150 ----RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA 205
Query: 755 GRYVVSASEDS---YVYV---WKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVG 808
++ DS Y + S+ + ++ P G
Sbjct: 206 APFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYG 265
Query: 809 DTW 811
W
Sbjct: 266 PVW 268
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.9 bits (92), Expect = 0.001
Identities = 14/154 (9%), Positives = 47/154 (30%), Gaps = 5/154 (3%)
Query: 618 VDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYN 677
+ + + ++ ++ + +++V D V + + G+ LV + +
Sbjct: 30 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMID 89
Query: 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF 737
+ + + I + + + + + ++DG L K
Sbjct: 90 LWAKEPTKVAEIKIGI----EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ 145
Query: 738 KGFRNTNSQISASLTANGR-YVVSASEDSYVYVW 770
+ + + R + AS + ++
Sbjct: 146 IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 179
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.4 bits (103), Expect = 4e-05
Identities = 15/240 (6%), Positives = 55/240 (22%), Gaps = 9/240 (3%)
Query: 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS 512
W + DG+ L V V + + + D +
Sbjct: 102 FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK---RMLDVPDCYHIFPTAP 158
Query: 513 PEPTSLSP--KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD--KPICSFQGHLD 568
+ + + + + + +
Sbjct: 159 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKI 218
Query: 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL 628
+DLS ++ L + + ++ + I + +
Sbjct: 219 HQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 278
Query: 629 DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALV--GSYKGSCHLYNTSENKLQQK 686
V + + + ++ + + + D + L + + ++++ + +
Sbjct: 279 SRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 338
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 6/75 (8%), Positives = 19/75 (25%)
Query: 583 SSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642
++S + + ++S +P + +++ + V I V
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66
Query: 643 VDWNDLHEMVTAACY 657
+
Sbjct: 67 IATVPAGSSPQGVAV 81
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 38.7 bits (88), Expect = 0.002
Identities = 7/70 (10%), Positives = 17/70 (24%)
Query: 575 WSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRI 634
+K+ TV + + I P + +++ S V +
Sbjct: 211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSV 270
Query: 635 WSIPERQVVD 644
+
Sbjct: 271 IDTATNTITA 280
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 39.4 bits (90), Expect = 0.001
Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 7/101 (6%)
Query: 583 SSSMDKTVRLWHLSSKTCLKI---FSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI-- 637
+S + + +W+L+ + L + V + +P ++ + +V + I
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68
Query: 638 --PERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676
+ L +T GQ VGSY
Sbjct: 69 DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSV 109
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 927 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.98 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.98 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.92 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.92 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.91 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.91 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.9 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.89 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.88 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.86 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.83 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.82 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.81 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.78 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.77 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.73 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.71 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.69 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.67 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.61 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.57 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.54 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.53 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.39 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.22 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.17 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.17 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.17 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.01 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.9 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.88 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.77 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.74 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.7 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.68 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.67 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.66 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.5 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.48 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.47 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.4 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.24 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.17 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.13 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.08 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.06 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.02 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.95 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.65 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.36 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.15 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.94 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.57 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.53 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.51 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.32 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.87 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.39 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 95.3 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.0 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 94.91 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.85 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.73 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.53 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 94.51 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 93.98 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 93.92 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 92.61 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 91.75 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 91.16 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.23 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 88.22 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 87.69 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 87.57 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 85.4 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 84.63 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 81.77 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 80.16 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-34 Score=318.32 Aligned_cols=288 Identities=18% Similarity=0.282 Sum_probs=248.3
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
++| .|...|+||+|+|+|++||||+ ||.|+|||+.+......+.......|...|.+++|+|++.+++++..++.+..
T Consensus 46 ~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~i 123 (337)
T d1gxra_ 46 NTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred EEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccc
Confidence 444 7999999999999999999998 89999999988765555444445677888999999999999999988888743
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~ 607 (927)
+.... ...+....+.+|...|.+++|+|+ ..+++++.|+.|++|++.++++..... |.
T Consensus 124 wd~~~--------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~ 183 (337)
T d1gxra_ 124 WDLAA--------------------PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183 (337)
T ss_dssp EECCC--------------------C--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred ccccc--------------------ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 32110 122445677889999999999998 789999999999999999999887776 89
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
..|.+++|++ ++.++++++.|+.|++||+++++.+....+...|.+++|+|++++|++++.++.|++||+..+.....
T Consensus 184 ~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~- 261 (337)
T d1gxra_ 184 DGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL- 261 (337)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE-
T ss_pred cccccccccc-cccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccc-
Confidence 9999999999 99999999999999999999999998889999999999999999999999999999999998876543
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
..|...|++++|+|++. +|++++.|+.|++||......... ..+...|.+++|+|++++|++|+.||+|
T Consensus 262 ---------~~~~~~i~~v~~s~~g~-~l~s~s~Dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~t~s~D~~I 330 (337)
T d1gxra_ 262 ---------HLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp ---------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred ---------cccccccceEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-ccCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence 47888999999999987 899999999999999765444333 3356789999999999999999999999
Q ss_pred EEEEC
Q 002407 768 YVWKY 772 (927)
Q Consensus 768 ~IWdl 772 (927)
+|||+
T Consensus 331 ~vWdl 335 (337)
T d1gxra_ 331 TVYEV 335 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.3e-34 Score=316.38 Aligned_cols=293 Identities=19% Similarity=0.299 Sum_probs=223.8
Q ss_pred ccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccE
Q 002407 427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML 506 (927)
Q Consensus 427 g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v 506 (927)
+..++.+.+|+...+....... ....+|++.|+||+|+|||++||+|+ |++|+||++.+++.+..+......
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~l-~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~------ 105 (388)
T d1erja_ 34 KQTNDYYILYNPALPREIDVEL-HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAA------ 105 (388)
T ss_dssp EECSSCEEEECTTSCCCEEEEE-EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------
T ss_pred cCCCCcEEEeCCCCCcceeeee-EeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccc------
Confidence 3344456677765444333322 23346999999999999999999987 899999999988766554211000
Q ss_pred EEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEe
Q 002407 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSS 585 (927)
Q Consensus 507 ~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs 585 (927)
.............+|...|++++|+|+ .+|++|+
T Consensus 106 ---------------------------------------------~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~ 140 (388)
T d1erja_ 106 ---------------------------------------------NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 140 (388)
T ss_dssp ----------------------------------------------------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred ---------------------------------------------cccccccccccccCCCCCEEEEEECCCCCcceecc
Confidence 000000112234568899999999999 7899999
Q ss_pred CCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECC-CCCE
Q 002407 586 MDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTP-DGQG 663 (927)
Q Consensus 586 ~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~sp-dg~~ 663 (927)
.|++|++||...++.+..+. |...|.+++|++ ++..+++++.++.|++||+.+...............+.+.+ ++.+
T Consensus 141 ~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (388)
T d1erja_ 141 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY 219 (388)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCE
T ss_pred ccccccccccccccccccccccccccccccccc-ccccccccccceeeeeeeccccccccccccccccccccccCCCCCe
Confidence 99999999999999888877 999999999999 99999999999999999999998887777777777777766 8899
Q ss_pred EEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc----------
Q 002407 664 ALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL---------- 733 (927)
Q Consensus 664 l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~---------- 733 (927)
|++++.|+.|++||+.++.....+... ......|...|++++|+|++. +|++++.|+.|++||....
T Consensus 220 l~~~~~d~~i~i~~~~~~~~~~~~~~~--~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 296 (388)
T d1erja_ 220 IAAGSLDRAVRVWDSETGFLVERLDSE--NESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPN 296 (388)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC-------------
T ss_pred EEEEcCCCeEEEeecccCccceeeccc--cccccCCCCCEEEEEECCCCC-EEEEEECCCcEEEEeccCCcccccccccc
Confidence 999999999999999998877654321 222346888999999999887 8999999999999995322
Q ss_pred --eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 734 --VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 734 --~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
........+...+.+++|+|++++|++|+.||.|+|||+.+++
T Consensus 297 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~ 341 (388)
T d1erja_ 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 341 (388)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred ccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 1223334457789999999999999999999999999998654
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.2e-33 Score=298.60 Aligned_cols=282 Identities=22% Similarity=0.355 Sum_probs=242.9
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
..|+||++.|++|+|+|++++||||+.||+|+|||+.+++.+..+ .+|...|..+.+++++.+++.......+..
T Consensus 11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-----~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~ 85 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-----KGHTDSVQDISFDHSGKLLASCSADMTIKL 85 (317)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEE-----eCCCCcEEEEeeeccccccccccccccccc
Confidence 468999999999999999999999999999999999998877765 467788999999999999888766654422
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~ 607 (927)
.. ....+....+.+|...+.++.|+++ ..+++++.|+.+++||+.+++.+..+. |.
T Consensus 86 ~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 143 (317)
T d1vyhc1 86 WD----------------------FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR 143 (317)
T ss_dssp EE----------------------TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred cc----------------------ccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCC
Confidence 21 1223445566789999999999998 789999999999999999999988887 89
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCC--------------------CEEEE
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDG--------------------QGALV 666 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg--------------------~~l~t 666 (927)
..+.+++|+| ++.+|++++.|+.|++|++.+++.+.. ..+...+.+++|+|++ .++++
T Consensus 144 ~~~~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (317)
T d1vyhc1 144 EWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222 (317)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred Ccceeeeccc-CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEe
Confidence 9999999999 999999999999999999999887764 4566788899887753 57899
Q ss_pred EECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecCCc
Q 002407 667 GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTN 744 (927)
Q Consensus 667 gs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~~ 744 (927)
++.|+.|++||+.+++.+..+ ..|...|++++|+|++. +|++++.|+.|+|||..+ .+..+.. |..
T Consensus 223 ~~~d~~i~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~~ 290 (317)
T d1vyhc1 223 GSRDKTIKMWDVSTGMCLMTL---------VGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLNA--HEH 290 (317)
T ss_dssp EETTSEEEEEETTTTEEEEEE---------ECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSCCCEEEEC--CSS
T ss_pred ccCCCEEEEEECCCCcEEEEE---------eCCCCCEEEEEECCCCC-EEEEEECCCeEEEEECCCCcEEEEEcC--CCC
Confidence 999999999999999887765 37889999999999886 799999999999999654 4455554 567
Q ss_pred ceEEEEEecCCCEEEEEECCCcEEEEE
Q 002407 745 SQISASLTANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 745 ~v~sv~fspdg~~Lasgs~Dg~I~IWd 771 (927)
.|++++|+|++++|++|+.||+|+|||
T Consensus 291 ~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 291 FVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 899999999999999999999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.3e-32 Score=290.93 Aligned_cols=292 Identities=20% Similarity=0.317 Sum_probs=246.9
Q ss_pred eeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 448 ~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
..++|+||++.|++|+|+|++++||||+.||+|+|||+.+++.+..+ ..+...|.+++|+|++.++++++.++.+
T Consensus 47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~-----~~~~~~v~~v~~~~~~~~l~~~~~d~~i 121 (340)
T d1tbga_ 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI-----PLRSSWVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE-----ECSCSCEEEEEECTTSSEEEEEETTCCE
T ss_pred eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEE-----ecccccEEeeEeeccceeeeeeccccee
Confidence 34678999999999999999999999999999999999998877665 3566789999999999999999888876
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h 606 (927)
..+..... ....+....+.+|...+....+..+..++....|.....|............ +
T Consensus 122 ~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (340)
T d1tbga_ 122 SIYNLKTR------------------EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGH 183 (340)
T ss_dssp EEEESSSS------------------CSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECC
T ss_pred eccccccc------------------ccccccceeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 54432211 1122455677889988888888888889999999999999998877666555 7
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
...+..+.+.+ ...++++++.|+.|++||+++++++.. ..|...|++++|+|++++|++|+.|+.|++||+.......
T Consensus 184 ~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~ 262 (340)
T d1tbga_ 184 TGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262 (340)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ceeEeeecccc-ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccc
Confidence 88899999999 999999999999999999999988764 4567899999999999999999999999999999888766
Q ss_pred ecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS 765 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg 765 (927)
.+.. ..+...|++++|+|++. +|++++.|+.|+|||............|...|.+++|+|++++|++|+.||
T Consensus 263 ~~~~-------~~~~~~i~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg 334 (340)
T d1tbga_ 263 TYSH-------DNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp EECC-------TTCCSCEEEEEECSSSC-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred cccc-------ccccCceEEEEECCCCC-EEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCC
Confidence 5432 36677899999999887 899999999999999765544444445677899999999999999999999
Q ss_pred cEEEEE
Q 002407 766 YVYVWK 771 (927)
Q Consensus 766 ~I~IWd 771 (927)
.|+|||
T Consensus 335 ~v~iWd 340 (340)
T d1tbga_ 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.6e-31 Score=289.34 Aligned_cols=280 Identities=17% Similarity=0.218 Sum_probs=220.7
Q ss_pred eeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCccccee
Q 002407 415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494 (927)
Q Consensus 415 sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l 494 (927)
+...++..+++.. +..|.+|+..+..... .+.+|.+.|++|+|+|+|++||+|+.||+|+||++.+.....
T Consensus 24 a~~~~g~~l~~~~--~~~v~i~~~~~~~~~~-----~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~-- 94 (311)
T d1nr0a1 24 GNTPAGDKIQYCN--GTSVYTVPVGSLTDTE-----IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL-- 94 (311)
T ss_dssp EECTTSSEEEEEE--TTEEEEEETTCSSCCE-----EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE--
T ss_pred EEcCCCCEEEEEe--CCEEEEEECCCCceeE-----EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc--
Confidence 3334444444432 4458889877665543 457999999999999999999999999999999987654211
Q ss_pred ecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEE
Q 002407 495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS 574 (927)
Q Consensus 495 ~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~ 574 (927)
...+.+|...|.+++
T Consensus 95 -----------------------------------------------------------------~~~~~~~~~~v~~v~ 109 (311)
T d1nr0a1 95 -----------------------------------------------------------------KTTIPVFSGPVKDIS 109 (311)
T ss_dssp -----------------------------------------------------------------EEEEECSSSCEEEEE
T ss_pred -----------------------------------------------------------------ccccccccCcccccc
Confidence 124567999999999
Q ss_pred ecCC-cEEEEEeC--CCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCC-EEEEEECCCcEEEEeCCCCcEEEec-cC
Q 002407 575 WSKS-QHLLSSSM--DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQVVDWN-DL 648 (927)
Q Consensus 575 ~spd-~~L~Sgs~--DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~-~L~sgs~Dg~I~IWDl~t~~~v~~~-~~ 648 (927)
|+|+ .+|++++. +..++||++.+++....+. |...|++++|+| ++. .|++|+.|+.|++||+++++..... .+
T Consensus 110 ~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~-~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~ 188 (311)
T d1nr0a1 110 WDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH 188 (311)
T ss_dssp ECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-cceeeecccccccccccccccccccccccccc
Confidence 9998 67888875 4669999999998887776 899999999999 665 5889999999999999998877654 55
Q ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 649 ~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
...|++++|+|++++|++++.|+.|++||+.++.....+.. ......+|...|++++|+|++. +|++++.|+.|+||
T Consensus 189 ~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~--~~~~~~~h~~~V~~~~~s~~~~-~l~tgs~Dg~v~iw 265 (311)
T d1nr0a1 189 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED--DSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIW 265 (311)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC--TTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred cccccccccCccccccccccccccccccccccccccccccc--cccccccccccccccccCCCCC-EEEEEeCCCeEEEE
Confidence 68999999999999999999999999999999887765432 2233457889999999999886 89999999999999
Q ss_pred ECCcc--eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 729 DGIDL--VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 729 D~~~~--~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
|..+. +..+..+.. .....+.+.+++.+|++++.||.|++||++
T Consensus 266 d~~t~~~~~~l~~~~~-~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 266 NVATLKVEKTIPVGTR-IEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp ETTTTEEEEEEECCSS-GGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred ECCCCcEEEEEECCCC-ccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 96544 444444322 122234455566789999999999999974
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.1e-31 Score=285.85 Aligned_cols=290 Identities=18% Similarity=0.209 Sum_probs=223.8
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
.+.++||.+.|++|+|+|+|++||||+.||+|+|||+.+++....+ ...|...|.++.|+|++.+++.+. ++.+.
T Consensus 5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~----~~~h~~~v~~v~~~~~g~~~~~~~-d~~v~ 79 (299)
T d1nr0a2 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF----PDVHATMITGIKTTSKGDLFTVSW-DDHLK 79 (299)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS----SCSCSSCEEEEEECTTSCEEEEET-TTEEE
T ss_pred ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE----cCCCCCcEEEEEeeccceeecccc-eeeEE
Confidence 4678999999999999999999999999999999999988766554 346778899999999998776654 44443
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCC
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSD 608 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~ 608 (927)
.+...... ..........|...+.+++|++++.+++++.++.+++|+... ........
T Consensus 80 ~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~---~~~~~~~~ 137 (299)
T d1nr0a2 80 VVPAGGSG-------------------VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK---LTEVPISY 137 (299)
T ss_dssp EECSSSSS-------------------SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE---EEEEECSS
T ss_pred EeccCCcc-------------------cccccccccccccccccccccccccccccccccccccccccc---cccccccc
Confidence 33211100 001112234577889999999997777777788999999542 33344566
Q ss_pred ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE--EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV--DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 609 ~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v--~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
.+.+++|+| ++++|++++.|+.|++||+.++++. ....+...|++++|+|++++|++++.++.|++||+.++.....
T Consensus 138 ~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~ 216 (299)
T d1nr0a2 138 NSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH 216 (299)
T ss_dssp CEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred ccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999 9999999999999999999887654 3556778999999999999999999999999999987765443
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc--eEEEEeecCCcceEEEEEecCCCEEEEEECC
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL--VHKFKGFRNTNSQISASLTANGRYVVSASED 764 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~--~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D 764 (927)
.. ....|...|++++|+|++. +|++++.|+.|+|||.... ........+........+++++++|++++.|
T Consensus 217 ~~------~~~~h~~~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D 289 (299)
T d1nr0a2 217 TN------SWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289 (299)
T ss_dssp CC------CCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETT
T ss_pred cc------ccccccccccccccccccc-ceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCC
Confidence 21 1246889999999999987 8999999999999996532 2233333333333444455677899999999
Q ss_pred CcEEEEECC
Q 002407 765 SYVYVWKYE 773 (927)
Q Consensus 765 g~I~IWdl~ 773 (927)
+.|+|||+.
T Consensus 290 ~~i~iWdl~ 298 (299)
T d1nr0a2 290 SNIKFWNVP 298 (299)
T ss_dssp SCEEEEECC
T ss_pred CEEEEEecc
Confidence 999999984
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.9e-31 Score=288.27 Aligned_cols=271 Identities=15% Similarity=0.203 Sum_probs=232.6
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
..++++|. ++.|++|+................+|.+.|.+|+|+|+|++||+|+.||+|+|||+......... ...
T Consensus 63 g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~ 138 (337)
T d1gxra_ 63 TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA---ELT 138 (337)
T ss_dssp SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE---EEE
T ss_pred CCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccc---ccc
Confidence 35567776 67899999887766655555667789999999999999999999999999999998765432221 124
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
.+...+..+.++|++.+++++..+..+. ++++ ..+......+|...|++++|+++
T Consensus 139 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~-----------------------~~~~~~~~~~~~~~~~~~~v~~l~~s~~~ 195 (337)
T d1gxra_ 139 SSAPACYALAISPDSKVCFSCCSDGNIA-----------------------VWDLHNQTLVRQFQGHTDGASCIDISNDG 195 (337)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEE-----------------------EEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred cccccccccccccccccccccccccccc-----------------------ccccccccccccccccccccccccccccc
Confidence 5667788999999999999887777663 3332 34556677889999999999998
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEEC
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYT 658 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~s 658 (927)
..+++++.|+.|++||+.+++.+..+.|...|.+++|+| ++++|++++.|+.|++||+.+++......+...|++++|+
T Consensus 196 ~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s 274 (337)
T d1gxra_ 196 TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA 274 (337)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEEC
T ss_pred cccccccccccccccccccceeecccccccceEEEEEcc-cccccceeccccccccccccccccccccccccccceEEEC
Confidence 789999999999999999999999999999999999999 9999999999999999999999998888899999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 659 pdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
|++++|++++.||.|++||+.+++.+... .|...|++++|+|++. +|++++.|++|+|||+
T Consensus 275 ~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~----------~~~~~v~~~~~s~d~~-~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 275 YCGKWFVSTGKDNLLNAWRTPYGASIFQS----------KESSSVLSCDISVDDK-YIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEE----------ECSSCEEEEEECTTSC-EEEEEETTSCEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCEEEEc----------cCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEE
Confidence 99999999999999999999998877552 5778999999999987 8999999999999983
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=3.8e-30 Score=278.55 Aligned_cols=317 Identities=18% Similarity=0.269 Sum_probs=233.5
Q ss_pred eeEeecCCCCE-EEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 449 CQEIQAHNGSI-WSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 449 ~q~L~gH~~~I-~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
..+|+||.+.| +|++| ++++||||+.||+|+|||+.+++
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~-------------------------------------- 44 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-------------------------------------- 44 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTE--------------------------------------
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCc--------------------------------------
Confidence 35689999886 56655 68899999999999999986543
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe--
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-- 605 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-- 605 (927)
++.++.+|.+.|++|+|+++++|++++.|++|++|++...++.....
T Consensus 45 -------------------------------~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~ 93 (355)
T d1nexb2 45 -------------------------------FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGH 93 (355)
T ss_dssp -------------------------------EEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred -------------------------------EEEEEECCCCCEEEEEEcCCCEEEEEecccccccccccccccccccccc
Confidence 23456789999999999999999999999999999999998877665
Q ss_pred -cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC----------------------CcEEEEEECCCCC
Q 002407 606 -HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH----------------------EMVTAACYTPDGQ 662 (927)
Q Consensus 606 -h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~----------------------~~V~sla~spdg~ 662 (927)
+...+..+.+.+ ++.++++++.|+.|++||+.+...+...... .......+.++++
T Consensus 94 ~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (355)
T d1nexb2 94 NSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN 172 (355)
T ss_dssp SSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETT
T ss_pred ccccccccccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccc
Confidence 334455667777 8899999999999999999876543211100 0111234566789
Q ss_pred EEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecC
Q 002407 663 GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRN 742 (927)
Q Consensus 663 ~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~ 742 (927)
+++++..|+.|++||+.+++..... ..+...+.++.|+|++. .+++++.|+.|++||............+
T Consensus 173 ~~~~~~~d~~i~~~d~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h 242 (355)
T d1nexb2 173 IVVSGSYDNTLIVWDVAQMKCLYIL---------SGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTLQGH 242 (355)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEE---------CCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred eeeeecccceeeeeecccccceeee---------eccccccccccccccce-eeecccccceEEeeeccccccccccccc
Confidence 9999999999999999998877654 36778899999999887 8999999999999997765555555556
Q ss_pred CcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeecc
Q 002407 743 TNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFS 822 (927)
Q Consensus 743 ~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~ 822 (927)
...|.+++|+ +++|++++.||.|++||+.+..... .++..
T Consensus 243 ~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~------------~~~~~-------------------------- 282 (355)
T d1nexb2 243 TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF------------SYHHT-------------------------- 282 (355)
T ss_dssp SSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEE------------EEECT--------------------------
T ss_pred cccccccccc--cceeeeeecccccccccccccceec------------ccccC--------------------------
Confidence 7778888876 5799999999999999987542110 00000
Q ss_pred ccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhcc----ccccCCCceecccCCCCCcc
Q 002407 823 TANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL----TARNRSPRTSLDISNGISSS 898 (927)
Q Consensus 823 ~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~----~~~~~s~v~s~~~~~~~~~a 898 (927)
... ....|++++.+|++++ |+.+++|+.+.... ..+|..++. +++
T Consensus 283 ----~~~--------------~~~~~~~~~~~l~~g~-----d~~i~vwd~~tg~~~~~~~~~~~~~V~--------~v~ 331 (355)
T d1nexb2 283 ----NLS--------------AITTFYVSDNILVSGS-----ENQFNIYNLRSGKLVHANILKDADQIW--------SVN 331 (355)
T ss_dssp ----TCC--------------CCCEEEECSSEEEEEE-----TTEEEEEETTTCCBCCSCTTTTCSEEE--------EEE
T ss_pred ----Cce--------------EEEEEcCCCCEEEEEe-----CCEEEEEECCCCCEEEEEecCCCCCEE--------EEE
Confidence 000 0113677887777653 67899999764322 234444444 468
Q ss_pred cCCCCCEEEEEcCCCcEEEee
Q 002407 899 ISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 899 ~S~dG~vLvTgs~DG~IrvW~ 919 (927)
|+|+ .+|++++.||+++||-
T Consensus 332 ~~~~-~~~~~~s~dg~~~l~~ 351 (355)
T d1nexb2 332 FKGK-TLVAAVEKDGQSFLEI 351 (355)
T ss_dssp EETT-EEEEEEESSSCEEEEE
T ss_pred EcCC-eEEEEEECCCcEEEEE
Confidence 8887 4788999999988774
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.98 E-value=9.7e-31 Score=292.03 Aligned_cols=251 Identities=14% Similarity=0.251 Sum_probs=201.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~ 534 (927)
+..+|+|++|+|||++||+|+.|+.|+||++.+++.
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-------------------------------------------- 41 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-------------------------------------------- 41 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE--------------------------------------------
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE--------------------------------------------
Confidence 457899999999999999999999999999765421
Q ss_pred cccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe---cCCce
Q 002407 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYV 610 (927)
Q Consensus 535 ~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~---h~~~V 610 (927)
..+..+.+|.+.|++|+|+|+ ++|++++.|++|+|||+.++.....+. |...|
T Consensus 42 -----------------------~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v 98 (371)
T d1k8kc_ 42 -----------------------VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAA 98 (371)
T ss_dssp -----------------------EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCE
T ss_pred -----------------------EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccc
Confidence 123467789999999999998 889999999999999999877654443 78899
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE-----EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 611 TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-----DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 611 ~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v-----~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
++++|+| ++++|++++.|+.|++|++...... ....+...|.+++|+|++++|++|+.|+.|++|++.......
T Consensus 99 ~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~ 177 (371)
T d1k8kc_ 99 RCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE 177 (371)
T ss_dssp EEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSC
T ss_pred ccccccc-ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCcccc
Confidence 9999999 9999999999999999998765321 233456789999999999999999999999999987644222
Q ss_pred ecccc---------cccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCC
Q 002407 686 KSPIN---------LQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGR 756 (927)
Q Consensus 686 ~~~i~---------~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~ 756 (927)
..... ........|...|++++|+|++. +|++++.|+.|++||............+..+|.+++|+|+++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~ 256 (371)
T d1k8kc_ 178 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS 256 (371)
T ss_dssp CCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTE
T ss_pred ccccccccccccceeeeeeccCccCcEEEEEeecccc-cccccccCCcceEEeeecccceeeeecccccceeeeecCCCC
Confidence 11100 01112347888899999999987 799999999999999765555444555677899999999998
Q ss_pred EEEEEECCCcEEEEECCCC
Q 002407 757 YVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 757 ~Lasgs~Dg~I~IWdl~s~ 775 (927)
+|++| .|+.+++|.....
T Consensus 257 ~la~g-~d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 257 LVAAG-HDCFPVLFTYDSA 274 (371)
T ss_dssp EEEEE-TTSSCEEEEEETT
T ss_pred EEEEE-cCCceEEEEeeCC
Confidence 88765 5788888877653
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.6e-29 Score=280.49 Aligned_cols=281 Identities=26% Similarity=0.369 Sum_probs=218.6
Q ss_pred CeEEEccCceEEEEeccCcccccceee-------------eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYK-------------CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~-------------~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~ 488 (927)
.++++|. +++|++|+..++++...+. .....+|...|++|+|+|+|++|++|+.||+|++|+...+
T Consensus 75 ~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~ 153 (388)
T d1erja_ 75 EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR 153 (388)
T ss_dssp SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred CEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccc
Confidence 4566775 6789999887655432221 1234578899999999999999999999999999998654
Q ss_pred cccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCC
Q 002407 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568 (927)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~ 568 (927)
+. +..+.+|..
T Consensus 154 ~~---------------------------------------------------------------------~~~~~~h~~ 164 (388)
T d1erja_ 154 KI---------------------------------------------------------------------VMILQGHEQ 164 (388)
T ss_dssp EE---------------------------------------------------------------------EEEECCCSS
T ss_pred cc---------------------------------------------------------------------ccccccccc
Confidence 32 234567999
Q ss_pred CEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-
Q 002407 569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN- 646 (927)
Q Consensus 569 ~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~- 646 (927)
.|.++.|+++ ..+++++.++.|++||+.+........+.....++.+.+.++++|++++.|+.|++|++.++..+...
T Consensus 165 ~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 244 (388)
T d1erja_ 165 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 244 (388)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred cccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeec
Confidence 9999999998 78999999999999999999988888887888888888878999999999999999999988766432
Q ss_pred -------cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccc---ccccccCCCCCeEEEEEcCCCCcEE
Q 002407 647 -------DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL---QNKKKRSHQRKITGFQFAPGSSSEV 716 (927)
Q Consensus 647 -------~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~---~~~~~~~h~~~Vtsl~fspdg~~~L 716 (927)
.+...|++++|+|++++|++++.|+.|++||+.+........... .......|...|++++|+|++. +|
T Consensus 245 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 323 (388)
T d1erja_ 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YI 323 (388)
T ss_dssp ------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EE
T ss_pred cccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC-EE
Confidence 345789999999999999999999999999998765443321110 1112246788999999999887 89
Q ss_pred EEEECCCcEEEEECCcceEEEEeecCCcceEEEEE------ecCCCEEEEEECCCcEEEEECC
Q 002407 717 LVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASL------TANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 717 lsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~f------spdg~~Lasgs~Dg~I~IWdl~ 773 (927)
++++.|+.|++||..+.........|...|.++++ +|++++||+|+.||+|+||+++
T Consensus 324 ~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 324 LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 99999999999997654444444445677888864 6789999999999999999985
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=9.7e-30 Score=270.20 Aligned_cols=285 Identities=15% Similarity=0.195 Sum_probs=232.9
Q ss_pred CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 557 ~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
.....+|.||.+.|++|+|+|+ .+|+||+.|++|+|||+.+++++..+. |...|.+++|+| ++.+++++..++.+.+
T Consensus 7 ~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~-~~~~~~~~~~~~~~~~ 85 (317)
T d1vyhc1 7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKL 85 (317)
T ss_dssp SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCE
T ss_pred CCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeec-cccccccccccccccc
Confidence 3445689999999999999998 789999999999999999999999887 999999999999 9999999999999999
Q ss_pred EeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 635 WSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 635 WDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
|+....+... ...+...+.++.|+|++..+++++.|+.+++||+.+++....+ ..|...+.+++|+|++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 156 (317)
T d1vyhc1 86 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF---------TGHREWVRMVRPNQDGT 156 (317)
T ss_dssp EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE---------ECCSSCEEEEEECTTSS
T ss_pred ccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEE---------ccCCCcceeeecccCCC
Confidence 9998877665 4456678999999999999999999999999999998877664 37888999999999887
Q ss_pred cEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecC--------------------CCEEEEEECCCcEEEEECC
Q 002407 714 SEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTAN--------------------GRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 714 ~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspd--------------------g~~Lasgs~Dg~I~IWdl~ 773 (927)
+|++++.|+.|++|+............+...+..+.|+|+ +.++++++.|+.|++|++.
T Consensus 157 -~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 235 (317)
T d1vyhc1 157 -LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 235 (317)
T ss_dssp -EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred -EEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECC
Confidence 8999999999999997665555555555667888888765 3578899999999999987
Q ss_pred CCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCC
Q 002407 774 AESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNG 853 (927)
Q Consensus 774 s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~ 853 (927)
++...... . .+. .....++|+|++.
T Consensus 236 ~~~~~~~~------------~-------------------------------~~~------------~~v~~~~~~~~~~ 260 (317)
T d1vyhc1 236 TGMCLMTL------------V-------------------------------GHD------------NWVRGVLFHSGGK 260 (317)
T ss_dssp TTEEEEEE------------E-------------------------------CCS------------SCEEEEEECSSSS
T ss_pred CCcEEEEE------------e-------------------------------CCC------------CCEEEEEECCCCC
Confidence 64321100 0 011 1122345899999
Q ss_pred eEEEeccccccCccccccCchhhcc---ccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 854 TISSATNSYFFDRISATWPEEKLVL---TARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 854 ~Lasas~~~~~d~~v~~W~~e~l~~---~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
+|++++ .|+.+.+|+...... ..+|..++. +++|+|++++||||+.||+|++|+
T Consensus 261 ~l~s~~----~dg~i~iwd~~~~~~~~~~~~h~~~V~--------~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 261 FILSCA----DDKTLRVWDYKNKRCMKTLNAHEHFVT--------SLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CEEEEE----TTTEEEEECCTTSCCCEEEECCSSCEE--------EEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEEE----CCCeEEEEECCCCcEEEEEcCCCCCEE--------EEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999987 788999999764322 335665554 468999999999999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=2.5e-29 Score=280.51 Aligned_cols=272 Identities=16% Similarity=0.237 Sum_probs=214.5
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
..+++++..++.|++|+...+++ ...+.|++|.++|++|+|+|++++||||+.|++|+|||+.++...
T Consensus 19 g~~la~~~~~~~i~iw~~~~~~~---~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~--------- 86 (371)
T d1k8kc_ 19 RTQIAICPNNHEVHIYEKSGNKW---VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK--------- 86 (371)
T ss_dssp SSEEEEECSSSEEEEEEEETTEE---EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE---------
T ss_pred CCEEEEEeCCCEEEEEECCCCCE---EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc---------
Confidence 34667788889999999876543 345678999999999999999999999999999999998654321
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-c
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q 579 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~ 579 (927)
+...+.+|...|++++|+|+ .
T Consensus 87 ----------------------------------------------------------~~~~~~~~~~~v~~i~~~p~~~ 108 (371)
T d1k8kc_ 87 ----------------------------------------------------------PTLVILRINRAARCVRWAPNEK 108 (371)
T ss_dssp ----------------------------------------------------------EEEECCCCSSCEEEEEECTTSS
T ss_pred ----------------------------------------------------------cccccccccccccccccccccc
Confidence 12234568899999999998 7
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEE-----ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc-------------
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIF-----SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ------------- 641 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~-----~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~------------- 641 (927)
.|++++.|++|++|++......... .|...|.+++|+| ++.+|++|+.|+.|++|++....
T Consensus 109 ~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~ 187 (371)
T d1k8kc_ 109 KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187 (371)
T ss_dssp EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSC
T ss_pred cceeecccCcceeeeeecccccccccccccccccccccccccc-cccceeccccCcEEEEEeeccCcccccccccccccc
Confidence 8999999999999998776543322 1788999999999 99999999999999999985432
Q ss_pred -----E-EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 642 -----V-VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 642 -----~-v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
. .....+...|.+++|+|++++|++++.|+.|++||+..+..+..+ ..|..+|++++|+|++.
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~---------~~~~~~v~s~~fs~d~~-- 256 (371)
T d1k8kc_ 188 MPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL---------ASETLPLLAVTFITESS-- 256 (371)
T ss_dssp CCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE---------ECSSCCEEEEEEEETTE--
T ss_pred ccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeee---------ecccccceeeeecCCCC--
Confidence 2 234456678999999999999999999999999999988776654 36788999999999874
Q ss_pred EEEEECCCcEEEEE--CCcceEEEEe---------------------------------------ecCCcceEEEEEecC
Q 002407 716 VLVTSADSRIRVVD--GIDLVHKFKG---------------------------------------FRNTNSQISASLTAN 754 (927)
Q Consensus 716 Llsgs~Dg~I~VwD--~~~~~~~~~~---------------------------------------~~~~~~v~sv~fspd 754 (927)
+++++.|+.+++|. .......+.. ..|...|.++++.+.
T Consensus 257 ~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~ 336 (371)
T d1k8kc_ 257 LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG 336 (371)
T ss_dssp EEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEES
T ss_pred EEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCC
Confidence 55667788777764 2111111100 014567888988775
Q ss_pred C----CEEEEEECCCcEEEEECCC
Q 002407 755 G----RYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 755 g----~~Lasgs~Dg~I~IWdl~s 774 (927)
+ ..|+|++.||.|+|||+++
T Consensus 337 ~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 337 GKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp TTTSCSEEEEEETTSEEEEEEHHH
T ss_pred CCcceEEEEEEcCCCeEEEEeCCc
Confidence 4 4689999999999999965
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=9.6e-29 Score=269.90 Aligned_cols=245 Identities=14% Similarity=0.197 Sum_probs=203.2
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
..+.+.+.+++++|+|+.||.+. ++.|.+|++.+..
T Consensus 14 ~~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~------------------------------------------- 49 (311)
T d1nr0a1 14 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLT------------------------------------------- 49 (311)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSS-------------------------------------------
T ss_pred CCCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCc-------------------------------------------
Confidence 34666778899999999999986 6679999986542
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEE--EEEe-cCC
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL--KIFS-HSD 608 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~--~~~~-h~~ 608 (927)
....+.+|...|++++|+|+ .+|++|+.|++|+|||+.++... ..+. |..
T Consensus 50 --------------------------~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 103 (311)
T d1nr0a1 50 --------------------------DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG 103 (311)
T ss_dssp --------------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS
T ss_pred --------------------------eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccC
Confidence 22345689999999999999 78999999999999999987644 3344 899
Q ss_pred ceEEEEEccCCCCEEEEEECC--CcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCE-EEEEECCCeEEEEECCCCeee
Q 002407 609 YVTCIQFNPVDDRYFISGSLD--AKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQG-ALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 609 ~V~~v~fsp~dg~~L~sgs~D--g~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~-l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
.|.+++|+| ++++|++++.+ ..++||++.+++.+.. ..|...|++++|+|++++ |++|+.|+.|++||+++++..
T Consensus 104 ~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~ 182 (311)
T d1nr0a1 104 PVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK 182 (311)
T ss_dssp CEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE
T ss_pred ccccccccc-cccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccccc
Confidence 999999999 99999998864 5699999998877654 445678999999999985 788999999999999998877
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEE--EEe-----ecCCcceEEEEEecCCCE
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHK--FKG-----FRNTNSQISASLTANGRY 757 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~--~~~-----~~~~~~v~sv~fspdg~~ 757 (927)
... ..|...|+++.|+|++. +|++++.|+.|++||....... +.. ..|...|.+++|+|++++
T Consensus 183 ~~~---------~~~~~~i~~v~~~p~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~ 252 (311)
T d1nr0a1 183 STF---------GEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252 (311)
T ss_dssp EEE---------CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred ccc---------ccccccccccccCcccc-ccccccccccccccccccccccccccccccccccccccccccccCCCCCE
Confidence 654 47889999999999887 8999999999999996554332 221 124567999999999999
Q ss_pred EEEEECCCcEEEEECCCCCCc
Q 002407 758 VVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 758 Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
|++|+.||.|+|||+++++..
T Consensus 253 l~tgs~Dg~v~iwd~~t~~~~ 273 (311)
T d1nr0a1 253 IASASADKTIKIWNVATLKVE 273 (311)
T ss_dssp EEEEETTSEEEEEETTTTEEE
T ss_pred EEEEeCCCeEEEEECCCCcEE
Confidence 999999999999999886543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=8.8e-28 Score=259.39 Aligned_cols=270 Identities=17% Similarity=0.289 Sum_probs=209.4
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
...++++|+.+++|++|+..+++. .+.+.+|.+.|++|+|+|++++|++|+.|+.|++|+............ ..
T Consensus 66 ~~~~l~sgs~Dg~v~iWd~~~~~~-----~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-~~ 139 (340)
T d1tbga_ 66 DSRLLVSASQDGKLIIWDSYTTNK-----VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-EL 139 (340)
T ss_dssp TSSEEEEEETTTEEEEEETTTTEE-----EEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEE-EE
T ss_pred CCCEEEEEECCCceeeeeccccee-----EEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccce-ec
Confidence 345678899999999999876643 456789999999999999999999999999999999876654333211 11
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
.++................... .+.... ...............+...+..+.+.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (340)
T d1tbga_ 140 AGHTGYLSCCRFLDDNQIVTSS-GDTTCA----------------------LWDIETGQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp CCCSSCEEEEEEEETTEEEEEE-TTTEEE----------------------EEETTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred cccccccccccccccccccccc-cccccc----------------------ccccccccccccccccceeEeeecccccc
Confidence 2222222222222222211111 111110 1111223344455667888999999887
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec---cCCCcEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN---DLHEMVTA 654 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~---~~~~~V~s 654 (927)
..+++++.|+.|++||+.+++++..+. |...|++++|+| ++++|++|+.|+.|++||+.....+... .+...|++
T Consensus 197 ~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 275 (340)
T d1tbga_ 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence 789999999999999999999998887 999999999999 9999999999999999999988776543 44467999
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 655 la~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
++|+|++++|++|+.||.|++||+.+++.+..+ .+|...|++++|+|++. +|++++.||.|+|||
T Consensus 276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~---------~~H~~~V~~l~~s~d~~-~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL---------AGHDNRVSCLGVTDDGM-AVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECSSSCEEEEEETTSCEEEEETTTCCEEEEE---------CCCSSCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred EEECCCCCEEEEEECCCEEEEEECCCCcEEEEE---------cCCCCCEEEEEEeCCCC-EEEEEccCCEEEEeC
Confidence 999999999999999999999999999887765 47899999999999887 789999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.7e-27 Score=257.53 Aligned_cols=303 Identities=15% Similarity=0.243 Sum_probs=226.3
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
...++++|..+++|++|+..+++ ..++|.+|.+.|++|+|+|+ .+|++|+.|++|++|++..........
T Consensus 22 ~~~~l~tgs~Dg~i~vWd~~~~~-----~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~---- 91 (355)
T d1nexb2 22 EDNYVITGADDKMIRVYDSINKK-----FLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFE---- 91 (355)
T ss_dssp ETTEEEEEETTTEEEEEETTTTE-----EEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEEC----
T ss_pred CCCEEEEEeCCCeEEEEECCCCc-----EEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccc----
Confidence 34688999999999999987654 34678999999999999986 589999999999999987654332210
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
...+...+..+.+.++
T Consensus 92 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 108 (355)
T d1nexb2 92 ---------------------------------------------------------------GHNSTVRCLDIVEYKNI 108 (355)
T ss_dssp ---------------------------------------------------------------CCSSCEEEEEEEEETTE
T ss_pred ---------------------------------------------------------------ccccccccccccccccc
Confidence 0112223445566777
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe------------------------cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS------------------------HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~------------------------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
..+++++.|++|++||+.+...+.... |...+. .+.+ ++++++++..|+.|++
T Consensus 109 ~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~-~~~~~~~~~~d~~i~~ 185 (355)
T d1nexb2 109 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSG-HGNIVVSGSYDNTLIV 185 (355)
T ss_dssp EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEE-ETTEEEEEETTSCEEE
T ss_pred ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--cccc-ccceeeeecccceeee
Confidence 679999999999999998765443321 223333 3444 6789999999999999
Q ss_pred EeCCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 635 WSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 635 WDl~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
||+.+++.+... .+...+.++.|+|++.++++++.|+.|++||+.++.....+ ..|...|++++|+++
T Consensus 186 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~---------~~h~~~v~~~~~~~~-- 254 (355)
T d1nexb2 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL---------QGHTALVGLLRLSDK-- 254 (355)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE---------CCCSSCCCEEEECSS--
T ss_pred eecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc---------ccccccccccccccc--
Confidence 999998877644 46678999999999999999999999999999998877664 478899999999863
Q ss_pred cEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccc-ccccceeeeeee
Q 002407 714 SEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSR-SKSITVTHSYEH 792 (927)
Q Consensus 714 ~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~-~~~~~~~~~~~~ 792 (927)
+|++++.|+.|++||..+....+..+... .....++++++++|++|+ |+.|+|||+++++.+.. ...+........
T Consensus 255 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~ 331 (355)
T d1nexb2 255 -FLVSAAADGSIRGWDANDYSRKFSYHHTN-LSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVN 331 (355)
T ss_dssp -EEEEECTTSEEEEEETTTCCEEEEEECTT-CCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEE
T ss_pred -eeeeeecccccccccccccceecccccCC-ceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEE
Confidence 89999999999999998888877776433 222346678888777765 89999999999876533 333333344456
Q ss_pred ecCCCeEEEEecCCceeEEe
Q 002407 793 FHCQDVSVAIPWPGVGDTWG 812 (927)
Q Consensus 793 ~~~~~v~vavs~~g~~~i~~ 812 (927)
|+++...++.+.+|...+|.
T Consensus 332 ~~~~~~~~~~s~dg~~~l~~ 351 (355)
T d1nexb2 332 FKGKTLVAAVEKDGQSFLEI 351 (355)
T ss_dssp EETTEEEEEEESSSCEEEEE
T ss_pred EcCCeEEEEEECCCcEEEEE
Confidence 66665555667777766554
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.2e-27 Score=255.13 Aligned_cols=318 Identities=18% Similarity=0.286 Sum_probs=232.1
Q ss_pred eeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
.+.+.|+||++.|.+ +++++|++||||+.||+|+|||+.+++
T Consensus 7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~------------------------------------- 48 (342)
T d2ovrb2 7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK------------------------------------- 48 (342)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-------------------------------------
T ss_pred CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC-------------------------------------
Confidence 445678999999875 467789999999999999999987653
Q ss_pred eeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS- 605 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~- 605 (927)
++.++.+|.+.|.+++|+++ +|++++.|+++++|+...........
T Consensus 49 --------------------------------~~~~~~~h~~~V~~v~~~~~-~l~s~s~D~~~~~~~~~~~~~~~~~~~ 95 (342)
T d2ovrb2 49 --------------------------------CLRTLVGHTGGVWSSQMRDN-IIISGSTDRTLKVWNAETGECIHTLYG 95 (342)
T ss_dssp --------------------------------EEEECCCCSSCEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred --------------------------------EEEEEeCCCCCEEEEEeCCC-ccccceecccccccccccccceecccc
Confidence 33456689999999999875 89999999999999999887766665
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
+...+....+ ....++.+..|+.+.+|+..+++............. .+.+....+++++.++.|++||+.......
T Consensus 96 ~~~~~~~~~~---~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~ 171 (342)
T d2ovrb2 96 HTSTVRCMHL---HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR-CVQYDGRRVVSGAYDFMVKVWDPETETCLH 171 (342)
T ss_dssp CSSCEEEEEE---ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE-EEEECSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred cceeEeeeec---ccccccccccceeEEEeecccccceeeeecccccce-eeccccceeeeecCCCeEEEeecccceeeE
Confidence 4555555554 356788899999999999999887765554443333 344566789999999999999999888766
Q ss_pred ecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS 765 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg 765 (927)
.+ ..|...+..+.+. +. .+++++.|+.|++||............+...+.+++++ +++|++++.|+
T Consensus 172 ~~---------~~~~~~~~~~~~~--~~-~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~ 237 (342)
T d2ovrb2 172 TL---------QGHTNRVYSLQFD--GI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADS 237 (342)
T ss_dssp EE---------CCCSSCEEEEEEC--SS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTS
T ss_pred EE---------cCcccccccccCC--CC-EEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCC
Confidence 54 3666666666654 33 89999999999999976655544555556667766654 57999999999
Q ss_pred cEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcce
Q 002407 766 YVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATG 845 (927)
Q Consensus 766 ~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~ 845 (927)
.|++|++............ ..+... .
T Consensus 238 ~i~iwd~~~~~~~~~~~~~----------------------------------------~~~~~~--------------~ 263 (342)
T d2ovrb2 238 TVKIWDIKTGQCLQTLQGP----------------------------------------NKHQSA--------------V 263 (342)
T ss_dssp CEEEEETTTCCEEEEECST----------------------------------------TSCSSC--------------E
T ss_pred EEEEEeccccccccccccc----------------------------------------ceeeec--------------e
Confidence 9999999764322111000 001010 1
Q ss_pred eeecCCCCeEEEeccccccCccccccCchhhccc--------cccCCCceecccCCCCCcccCCCCCEEEEEcCCCc---
Q 002407 846 YTNSPLNGTISSATNSYFFDRISATWPEEKLVLT--------ARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGE--- 914 (927)
Q Consensus 846 ~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~--------~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~--- 914 (927)
.++++++.++++++ .|+.+++|+.+..... .+|..++. +++|+|++.+|++|+.||+
T Consensus 264 ~~~~~~~~~~~s~s----~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~--------~v~~s~~~~~la~g~~dGt~~~ 331 (342)
T d2ovrb2 264 TCLQFNKNFVITSS----DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW--------RIRASNTKLVCAVGSRNGTEET 331 (342)
T ss_dssp EEEEECSSEEEEEE----TTSEEEEEETTTCCEEEEEEECTTGGGTCEEE--------EEEECSSEEEEEEECSSSSSCC
T ss_pred eecccCCCeeEEEc----CCCEEEEEECCCCCEEEEEecccCCCCCCCEE--------EEEECCCCCEEEEEeCCCCCee
Confidence 12345567888876 7788999987533211 12333333 4789999999999999996
Q ss_pred -EEEee
Q 002407 915 -IRAYQ 919 (927)
Q Consensus 915 -IrvW~ 919 (927)
|++|+
T Consensus 332 ~l~~~D 337 (342)
T d2ovrb2 332 KLLVLD 337 (342)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 88887
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=3.2e-28 Score=260.88 Aligned_cols=280 Identities=18% Similarity=0.217 Sum_probs=210.8
Q ss_pred CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
+..+.+.||.+.|++|+|+|+ .+|++|+.|++|++||+.++++++.+. |...|++++|+| ++. +++++.|+.+++
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~-~g~-~~~~~~d~~v~~ 80 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGD-LFTVSWDDHLKV 80 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSC-EEEEETTTEEEE
T ss_pred ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeec-cce-eecccceeeEEE
Confidence 456789999999999999999 789999999999999999999998875 889999999999 776 566778999999
Q ss_pred EeCCCCcEE----EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 635 WSIPERQVV----DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 635 WDl~t~~~v----~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
|++...... ....+...+.+++|+|++..+++++ ++.+.+|+... .... .....+++++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~-----------~~~~~~~~~~~s~ 146 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEV-----------PISYNSSCVALSN 146 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEE-----------ECSSCEEEEEECT
T ss_pred eccCCccccccccccccccccccccccccccccccccc-ccccccccccc--cccc-----------ccccccccccccc
Confidence 998654322 1234456889999999998777665 57899998543 2211 2345678999999
Q ss_pred CCCcEEEEEECCCcEEEEECCcc-eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeee
Q 002407 711 GSSSEVLVTSADSRIRVVDGIDL-VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHS 789 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~VwD~~~~-~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~ 789 (927)
++. +|++++.|+.|++||.... ........+...|.+++|+|++++|++++.|+.|++|++.++.........
T Consensus 147 ~~~-~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~----- 220 (299)
T d1nr0a2 147 DKQ-FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW----- 220 (299)
T ss_dssp TSC-EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC-----
T ss_pred ccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----
Confidence 876 8999999999999996432 233444556788999999999999999999999999999764332111000
Q ss_pred eeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCcccc
Q 002407 790 YEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISA 869 (927)
Q Consensus 790 ~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~ 869 (927)
..+.. ....++|+|++.+|++++ .|+.++
T Consensus 221 -----------------------------------~~h~~------------~v~~l~~s~~~~~l~sgs----~dg~i~ 249 (299)
T d1nr0a2 221 -----------------------------------TFHTA------------KVACVSWSPDNVRLATGS----LDNSVI 249 (299)
T ss_dssp -----------------------------------CCCSS------------CEEEEEECTTSSEEEEEE----TTSCEE
T ss_pred -----------------------------------ccccc------------ccccccccccccceEEEc----CCCEEE
Confidence 01111 122356999999999987 788999
Q ss_pred ccCchhhcc-----ccccC-CCceecccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 870 TWPEEKLVL-----TARNR-SPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 870 ~W~~e~l~~-----~~~~~-s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
+|+.+.... ...|. ..+ ...+++++.+|+||+.||+||+|+
T Consensus 250 iwd~~~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~l~s~s~D~~i~iWd 296 (299)
T d1nr0a2 250 VWNMNKPSDHPIIIKGAHAMSSV---------NSVIWLNETTIVSAGQDSNIKFWN 296 (299)
T ss_dssp EEETTCTTSCCEEETTSSTTSCE---------EEEEEEETTEEEEEETTSCEEEEE
T ss_pred EEECCCCCcceEEEecCCCCCcE---------EEEEECCCCEEEEEeCCCEEEEEe
Confidence 998764311 11111 111 134567789999999999999999
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.5e-27 Score=259.59 Aligned_cols=280 Identities=16% Similarity=0.205 Sum_probs=209.5
Q ss_pred cCCCCeEEEccCceEEEEeccCcccccceeeeeEeecC-CCCEEEEEEcC--CCCEEEEEeCCCcEEEEecCcCccccee
Q 002407 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAH-NGSIWSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGEL 494 (927)
Q Consensus 418 ~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH-~~~I~~vafSp--dG~~LaSgs~DgtVrVWdv~~~~~~~~l 494 (927)
.++..+++.......|+.|+....... ...++.+| ...|++++|+| +|.+||||+.||+|+|||+..++....+
T Consensus 27 ~~~~~la~~~~~~~~i~~~~~~~~~~~---~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~ 103 (325)
T d1pgua1 27 PTTNAIAYPCGKSAFVRCLDDGDSKVP---PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV 103 (325)
T ss_dssp TTTTEEEEEETTEEEEEECCSSCCSSC---SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEE
T ss_pred CCCCEEEEEeCCCEEEEEEeCCCCCcc---ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeee
Confidence 344444454455566788876544333 33556787 46899999998 6789999999999999998766543332
Q ss_pred ecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEE
Q 002407 495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS 574 (927)
Q Consensus 495 ~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~ 574 (927)
. ......+..|.++|.+++
T Consensus 104 ~-------------------------------------------------------------~~~~~~~~~~~~~v~~v~ 122 (325)
T d1pgua1 104 E-------------------------------------------------------------VNVKSEFQVLAGPISDIS 122 (325)
T ss_dssp E-------------------------------------------------------------EEEEEEEECCSSCEEEEE
T ss_pred e-------------------------------------------------------------cccccccccccCcEEEEE
Confidence 1 011224557889999999
Q ss_pred ecCC-cEEEEEe--CCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec----
Q 002407 575 WSKS-QHLLSSS--MDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN---- 646 (927)
Q Consensus 575 ~spd-~~L~Sgs--~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~---- 646 (927)
|+++ .+|++++ .++.+++|+..+++++..+. |...|++++|+|....++++++.|+.|++||+...+.....
T Consensus 123 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~ 202 (325)
T d1pgua1 123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH 202 (325)
T ss_dssp ECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS
T ss_pred ECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceeccccc
Confidence 9999 5666665 47789999999999998887 99999999999944456788999999999999887765432
Q ss_pred cCCCcEEEEEECCC-CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCC----eEEEEEcCCCCcEEEEEEC
Q 002407 647 DLHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK----ITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 647 ~~~~~V~sla~spd-g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~----Vtsl~fspdg~~~Llsgs~ 721 (927)
.+...|++++|+|+ +.+|++++.|+.|++||+++++.+..+. .|... +.++.| |++. +|++++.
T Consensus 203 ~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~---------~~~~~v~~~~~s~~~-~dg~-~l~s~s~ 271 (325)
T d1pgua1 203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE---------DDQEPVQGGIFALSW-LDSQ-KFATVGA 271 (325)
T ss_dssp CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC---------BTTBCCCSCEEEEEE-SSSS-EEEEEET
T ss_pred CCCCccEEeeeccccceeccccccccceeeeeecccccccccc---------ccccccccceeeeec-cCCC-EEEEEeC
Confidence 34467999999996 6889999999999999999998877653 34444 444444 4455 8999999
Q ss_pred CCcEEEEECC--cceEEEEeecCCcceEEEEEecC-CCEEEEEECCCcEEEEEC
Q 002407 722 DSRIRVVDGI--DLVHKFKGFRNTNSQISASLTAN-GRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 722 Dg~I~VwD~~--~~~~~~~~~~~~~~v~sv~fspd-g~~Lasgs~Dg~I~IWdl 772 (927)
|+.|+|||.. +.+..+..+.+...+..+++.+. +.+|++++.||.|+|||+
T Consensus 272 D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 272 DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 9999999965 45566666666555544444432 348899999999999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.6e-26 Score=246.71 Aligned_cols=302 Identities=17% Similarity=0.314 Sum_probs=217.6
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
..++++|+.+++|++|+..++++ .++|.+|.+.|++++|+|+ +|++|+.|+++++|+...........
T Consensus 27 g~~l~sgs~Dg~i~vWd~~~~~~-----~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~----- 94 (342)
T d2ovrb2 27 GNRIVSGSDDNTLKVWSAVTGKC-----LRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLY----- 94 (342)
T ss_dssp TTEEEEEETTSCEEEEETTTCCE-----EEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEEC-----
T ss_pred CCEEEEEeCCCeEEEEECCCCCE-----EEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceeccc-----
Confidence 45788899999999999877653 4677899999999999975 99999999999999988765443321
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCCc
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQ 579 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd~ 579 (927)
.....+......+ ..+..+..+..+ .++.. ..+....+..+..... .......
T Consensus 95 ~~~~~~~~~~~~~--~~~~~~~~d~~i-----------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 148 (342)
T d2ovrb2 95 GHTSTVRCMHLHE--KRVVSGSRDATL-----------------------RVWDIETGQCLHVLMGHVAAVR-CVQYDGR 148 (342)
T ss_dssp CCSSCEEEEEEET--TEEEEEETTSEE-----------------------EEEESSSCCEEEEEECCSSCEE-EEEECSS
T ss_pred ccceeEeeeeccc--ccccccccceeE-----------------------EEeecccccceeeeecccccce-eeccccc
Confidence 1112222222111 112222222222 12222 2233333333333333 3333447
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEE
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACY 657 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~ 657 (927)
.+++++.|+.|++||+....++..+. |...+..+.+ ++.+|++++.||.|++||++.++++... .+...+.++++
T Consensus 149 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 225 (342)
T d2ovrb2 149 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL 225 (342)
T ss_dssp CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE
T ss_pred eeeeecCCCeEEEeecccceeeEEEcCcccccccccC---CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEec
Confidence 89999999999999999999888776 7766666655 6789999999999999999998887644 45567777766
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceE
Q 002407 658 TPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVH 735 (927)
Q Consensus 658 spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~ 735 (927)
+ +++|++++.|+.|++||+...+....+.. ...|...+.++.++++ ++++++.||.|+|||..+ .+.
T Consensus 226 ~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~~s~s~Dg~i~iwd~~tg~~i~ 294 (342)
T d2ovrb2 226 K--DNILVSGNADSTVKIWDIKTGQCLQTLQG------PNKHQSAVTCLQFNKN---FVITSSDDGTVKLWDLKTGEFIR 294 (342)
T ss_dssp E--TTEEEEEETTSCEEEEETTTCCEEEEECS------TTSCSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE
T ss_pred C--CCEEEEEcCCCEEEEEecccccccccccc------cceeeeceeecccCCC---eeEEEcCCCEEEEEECCCCCEEE
Confidence 5 56999999999999999998876655432 1357778888888763 899999999999999654 444
Q ss_pred EEEee---cCCcceEEEEEecCCCEEEEEECCCc----EEEEECCC
Q 002407 736 KFKGF---RNTNSQISASLTANGRYVVSASEDSY----VYVWKYEA 774 (927)
Q Consensus 736 ~~~~~---~~~~~v~sv~fspdg~~Lasgs~Dg~----I~IWdl~s 774 (927)
.+... .+...|.+++|+|++.+|++|+.||+ |++||++.
T Consensus 295 ~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 295 NLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 44332 34567999999999999999999985 99999975
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.1e-26 Score=258.54 Aligned_cols=258 Identities=13% Similarity=0.164 Sum_probs=181.9
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
...++|.+.|++|++++ ++|+|||.|++|+|||..+.+...... .+
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~---------~~----------------------- 53 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKD---------KS----------------------- 53 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGG---------GE-----------------------
T ss_pred ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccc---------ee-----------------------
Confidence 44589999999999865 699999999999999976543211100 00
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCC------CCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEE
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL------DDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCL 601 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~------~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~ 601 (927)
.....|. ..+..+..... ..+++++.|+.|++|++......
T Consensus 54 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~ 102 (393)
T d1sq9a_ 54 -------------------------------YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET 102 (393)
T ss_dssp -------------------------------EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT
T ss_pred -------------------------------EeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCce
Confidence 0000111 11222333322 35789999999999997643221
Q ss_pred ---E--EE------ecCCceEEEEEccC----CCCEEEEEECCCcEEEEeCCCCc---------------EEE----ecc
Q 002407 602 ---K--IF------SHSDYVTCIQFNPV----DDRYFISGSLDAKVRIWSIPERQ---------------VVD----WND 647 (927)
Q Consensus 602 ---~--~~------~h~~~V~~v~fsp~----dg~~L~sgs~Dg~I~IWDl~t~~---------------~v~----~~~ 647 (927)
. .. .+...+..++|.+. ...++++++.||.+++|++.... ... ...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (393)
T d1sq9a_ 103 KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182 (393)
T ss_dssp CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSS
T ss_pred eeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccC
Confidence 1 11 14566788888762 24689999999999999974321 011 122
Q ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc---
Q 002407 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR--- 724 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~--- 724 (927)
+...+++++|+|++ +|++|+.|++|+|||+.+++....+... .....|...|++++|+|++. +|++++.|++
T Consensus 183 ~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~---~~l~~h~~~V~~l~~spdg~-~l~sgs~D~t~~~ 257 (393)
T d1sq9a_ 183 PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ---HSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGC 257 (393)
T ss_dssp SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC---C---CCCCCEEEEEECSSTT-EEEEEEEETTEEE
T ss_pred CCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccc---cccccccceEEEcccccccc-eeeeecCCCCcce
Confidence 33568899999998 8999999999999999999877654321 12357899999999999987 8999998874
Q ss_pred EEEEECCcc--eEEEEe-----------ecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 725 IRVVDGIDL--VHKFKG-----------FRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 725 I~VwD~~~~--~~~~~~-----------~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
|++||.... +..+.. ..|...|.+++|+|++++|++++.|++|+|||+++++.
T Consensus 258 i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~ 323 (393)
T d1sq9a_ 258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 323 (393)
T ss_dssp EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred eeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCE
Confidence 899996532 333221 24677899999999999999999999999999988653
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.6e-25 Score=238.48 Aligned_cols=269 Identities=14% Similarity=0.152 Sum_probs=209.0
Q ss_pred eeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 448 ~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
..++|+||.++|++|+|+| |+||+.||+|++||+.++. ..|...|..+.++++..+ ++++.++.+
T Consensus 5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~----------~~h~~~V~~~~~~~~~~~-~s~s~D~~v 69 (287)
T d1pgua2 5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH----------QDHSNLIVSLDNSKAQEY-SSISWDDTL 69 (287)
T ss_dssp EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE----------CCCCSCEEEEECCSTTCC-EEEETTTEE
T ss_pred eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC----------CCCCCCEEEEEecCCCeE-EEEeecccc
Confidence 4578899999999999997 9999999999999987643 356678888888877654 455555544
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecC
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHS 607 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~ 607 (927)
..+. .. ...+...+..+.+++++.++..+.++.+.+|+..+++.+..+.+.
T Consensus 70 ~~w~-----------------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (287)
T d1pgua2 70 KVNG-----------------------IT------KHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN 120 (287)
T ss_dssp EETT-----------------------EE------EEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred cccc-----------------------cc------ccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecccc
Confidence 2221 10 011344577888999988888888999999999999999988877
Q ss_pred CceEEEEEccCCCCEEEEEECCC-cEEEEeCCCCcEEEec--cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDA-KVRIWSIPERQVVDWN--DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg-~I~IWDl~t~~~v~~~--~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
..+.+ +++ ++..+++++.++ .|++|++...+..... .+...+++++|+|++++|++|+.||.|++||+.++...
T Consensus 121 ~~~~~--~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~ 197 (287)
T d1pgua2 121 SPGSA--VSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK 197 (287)
T ss_dssp SCEEE--EEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred ceeee--eec-cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccc
Confidence 66654 555 667777777765 6999999876655433 34578999999999999999999999999999988765
Q ss_pred eecccccccccccCCCCCeEEEEEcCCC---------CcEEEEEECCCcEEEEECCcceEEEE-eecCCcceEEEEEecC
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGS---------SSEVLVTSADSRIRVVDGIDLVHKFK-GFRNTNSQISASLTAN 754 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg---------~~~Llsgs~Dg~I~VwD~~~~~~~~~-~~~~~~~v~sv~fspd 754 (927)
... ...|...|++++|+|.+ ..+|++++.|+.|+|||..+....+. ...|...|.+++|+|+
T Consensus 198 ~~~--------~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~ 269 (287)
T d1pgua2 198 TSR--------WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP 269 (287)
T ss_dssp ECC--------SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred ccc--------ccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCC
Confidence 432 14788999999999854 34799999999999999654222222 2346778999999998
Q ss_pred CCEEEEEECCCcEEEEEC
Q 002407 755 GRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 755 g~~Lasgs~Dg~I~IWdl 772 (927)
+ .|++++.|+.|+||++
T Consensus 270 ~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 270 S-TLVSSGADACIKRWNV 286 (287)
T ss_dssp T-EEEEEETTSCEEEEEE
T ss_pred C-EEEEEECCCeEEEEEE
Confidence 6 5889999999999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.3e-26 Score=248.10 Aligned_cols=291 Identities=13% Similarity=0.108 Sum_probs=210.1
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
.+.+++|++.|++|+|+|++++||+|+.||+|+|||+.+......+
T Consensus 4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~---------------------------------- 49 (342)
T d1yfqa_ 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL---------------------------------- 49 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE----------------------------------
T ss_pred EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEE----------------------------------
Confidence 4566899999999999999999999999999999998765422221
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS- 605 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~- 605 (927)
....+|.++|++++|+++ .+|++|+.|++|++|++..........
T Consensus 50 --------------------------------~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~ 97 (342)
T d1yfqa_ 50 --------------------------------LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN 97 (342)
T ss_dssp --------------------------------EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBS
T ss_pred --------------------------------EEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccc
Confidence 123369999999999986 478999999999999999888777665
Q ss_pred -cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE----EEecc---CCCcEEEEEECCCCCEEEEEECCCeEEEEE
Q 002407 606 -HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV----VDWND---LHEMVTAACYTPDGQGALVGSYKGSCHLYN 677 (927)
Q Consensus 606 -h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~----v~~~~---~~~~V~sla~spdg~~l~tgs~Dg~I~IwD 677 (927)
+........+.+ +...+++++.++.+++||++.... ..... .......+.+.+.+..+++++.|+.|++||
T Consensus 98 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 176 (342)
T d1yfqa_ 98 NEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFR 176 (342)
T ss_dssp CCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEE
T ss_pred ccccccccccccc-ccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEe
Confidence 334444555566 888999999999999999865321 11111 123455667788899999999999999999
Q ss_pred CCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--------ceEEEEe-------ecC
Q 002407 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--------LVHKFKG-------FRN 742 (927)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--------~~~~~~~-------~~~ 742 (927)
+............ ......+.+..+.+.....+++++.|+.+.+|+... ....+.. ..+
T Consensus 177 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (342)
T d1yfqa_ 177 LPLCEDDNGTIEE------SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250 (342)
T ss_dssp SSCCTTCCCEEEE------CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSS
T ss_pred cccCcccceeeee------cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcc
Confidence 9876644332211 244556777777776666899999999999998321 1111111 223
Q ss_pred CcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeecc
Q 002407 743 TNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFS 822 (927)
Q Consensus 743 ~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~ 822 (927)
...+.+++|+|++++||+|+.||.|+|||+++.+...... .++ ....++++++|...+....+..+..+.
T Consensus 251 ~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~---------~~~-~~~~~~~s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA---------KFN-EDSVVKIACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp CCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC---------CCS-SSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred cccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec---------CCC-CCEEEEEEeCCCEEEEEEcCCcEEEee
Confidence 4568899999999999999999999999998865433221 111 223456677777666665555544443
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=4.7e-25 Score=241.26 Aligned_cols=246 Identities=13% Similarity=0.115 Sum_probs=178.1
Q ss_pred eEEEccCC-CCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCcEE--------EEEe-cCCceEEEEEccCCCCEEEEE
Q 002407 560 ICSFQGHL-DDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTCL--------KIFS-HSDYVTCIQFNPVDDRYFISG 626 (927)
Q Consensus 560 i~~l~gH~-~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~~~--------~~~~-h~~~V~~v~fsp~dg~~L~sg 626 (927)
+..+.+|. ..|++++|+|+ .+|++|+.||+|+|||+..++.. ..+. |..+|.+++|++ ++.+|+++
T Consensus 55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~ 133 (325)
T d1pgua1 55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVV 133 (325)
T ss_dssp EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEE
T ss_pred eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCcccee
Confidence 34566774 67999999984 47889999999999998754321 1122 788999999999 99998877
Q ss_pred EC--CCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCCE-EEEEECCCeEEEEECCCCeeeeecccccccccccCCCCC
Q 002407 627 SL--DAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQG-ALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (927)
Q Consensus 627 s~--Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~~-l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (927)
+. ++.+++|+..+++.+..+ .|...|++++|+|++.+ +++++.|+.|++||+...+....... ...|...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~------~~~~~~~ 207 (325)
T d1pgua1 134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT------HHKQGSF 207 (325)
T ss_dssp ECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS------SSCTTCC
T ss_pred eccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceeccc------ccCCCCc
Confidence 65 677999999998877654 46789999999999875 67899999999999988776655432 2467888
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEe---cCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 703 ITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLT---ANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 703 Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fs---pdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
|++++|+|++..+|++++.|+.|++||............+...+..+.|+ ++|++|++++.|+.|+|||+++++...
T Consensus 208 v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~ 287 (325)
T d1pgua1 208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQ 287 (325)
T ss_dssp EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred cEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence 99999999876689999999999999976544333333334444444443 789999999999999999999876443
Q ss_pred cccccc----eeeeeeeecCCCeEEEEecCCceeEEe
Q 002407 780 RSKSIT----VTHSYEHFHCQDVSVAIPWPGVGDTWG 812 (927)
Q Consensus 780 ~~~~~~----~~~~~~~~~~~~v~vavs~~g~~~i~~ 812 (927)
...... .......+..+...++.+.+|.+.+|.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 288 KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324 (325)
T ss_dssp EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred EEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence 221111 101111222334455555566666554
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.4e-24 Score=223.69 Aligned_cols=270 Identities=15% Similarity=0.282 Sum_probs=201.2
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
++....|...|+|++| ||++||||+.||+|+|||+.+++.+..+ .+|...|.++.+ ++.++++++.++.+.
T Consensus 8 i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l-----~~H~~~V~~v~~--~~~~l~s~s~D~~i~ 78 (293)
T d1p22a2 8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-----TGHTGSVLCLQY--DERVIITGSSDSTVR 78 (293)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-----CCCSSCEEEEEC--CSSEEEEEETTSCEE
T ss_pred EeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEE-----ecCCCCEeeeec--ccceeeccccccccc
Confidence 3445678999999765 7999999999999999999998877775 467788888876 567888888888774
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEE---E-
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKI---F- 604 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~---~- 604 (927)
. |.+..........+..............++++..++.+++|++........ +
T Consensus 79 ~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (293)
T d1p22a2 79 V-----------------------WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV 135 (293)
T ss_dssp E-----------------------EESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEEC
T ss_pred c-----------------------cccccccccccccccccccccccccccceeecccccceeEeecccccccccccccc
Confidence 3 333322222222222233333334457899999999999999987654322 2
Q ss_pred ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCee
Q 002407 605 SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (927)
Q Consensus 605 ~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~ 683 (927)
.|...|.++.+.+ ..+++++.|+.|++||+.+++.+..+ .+...+..+.++ +.++++++.|+.|++||+++...
T Consensus 136 ~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~ 210 (293)
T d1p22a2 136 GHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC 210 (293)
T ss_dssp CCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE
T ss_pred ccccccccceecc---cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEeccccee
Confidence 2788888888754 67889999999999999999877644 445667776664 67899999999999999999887
Q ss_pred eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-----------cceEEEEeecCCcceEEEEEe
Q 002407 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-----------DLVHKFKGFRNTNSQISASLT 752 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-----------~~~~~~~~~~~~~~v~sv~fs 752 (927)
+... ..+...+..+. +++. +|++++.|+.|++||.. .....+.. |...|.+++|
T Consensus 211 ~~~~---------~~~~~~v~~~~--~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--H~~~V~~v~~- 275 (293)
T d1p22a2 211 LRVL---------EGHEELVRCIR--FDNK-RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE--HSGRVFRLQF- 275 (293)
T ss_dssp EEEE---------CCCSSCEEEEE--CCSS-EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC--CSSCCCCEEE-
T ss_pred eeee---------cccceeeeecc--ccce-EEEEEcCCCEEEEEECCCCccccccCCceeeEEecC--CCCCEEEEEE-
Confidence 7654 35666676544 4443 89999999999999931 22344444 4667888888
Q ss_pred cCCCEEEEEECCCcEEEEE
Q 002407 753 ANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 753 pdg~~Lasgs~Dg~I~IWd 771 (927)
++++|++++.||+|+|||
T Consensus 276 -d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 276 -DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp -CSSCEEECCSSSEEEEEC
T ss_pred -cCCEEEEEecCCEEEEeC
Confidence 567899999999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=5.5e-24 Score=227.41 Aligned_cols=311 Identities=12% Similarity=0.051 Sum_probs=210.2
Q ss_pred ceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcE----EEEEecCCceEEEEEccCCCCEEEEEECCCcEE
Q 002407 559 PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC----LKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVR 633 (927)
Q Consensus 559 ~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~----~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~ 633 (927)
.+...++|.+.|++|+|+|+ .+|++++.|++|+|||+.++.. ...+.|..+|++++|+|.++.+|++|+.|+.|+
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~ 82 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence 45667899999999999998 7899999999999999976543 334459999999999995567899999999999
Q ss_pred EEeCCCCcEEEeccC--CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 634 IWSIPERQVVDWNDL--HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 634 IWDl~t~~~v~~~~~--~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
+|++........... ........+.++...+++++.++.+++||++............. ..........+.+.+.
T Consensus 83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 159 (342)
T d1yfqa_ 83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN---SNNTKVKNKIFTMDTN 159 (342)
T ss_dssp EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESC---SSSSSSCCCEEEEEEC
T ss_pred eeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccc---cccccceeeeeeeecc
Confidence 999988766554332 23445666777889999999999999999865433222211110 1122233445556665
Q ss_pred CCcEEEEEECCCcEEEEECCcc---eEEEEeecCCcceEEEEE-ecCCCEEEEEECCCcEEEEECCCCCCccccccccee
Q 002407 712 SSSEVLVTSADSRIRVVDGIDL---VHKFKGFRNTNSQISASL-TANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVT 787 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD~~~~---~~~~~~~~~~~~v~sv~f-spdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~ 787 (927)
+. .+++++.|+.|++||.... ............+....+ ..++..+++++.||.+.+|++...............
T Consensus 160 ~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~ 238 (342)
T d1yfqa_ 160 SS-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp SS-EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred CC-ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee
Confidence 55 7999999999999995321 111222223333444444 457789999999999999999875443222110000
Q ss_pred eeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCcc
Q 002407 788 HSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRI 867 (927)
Q Consensus 788 ~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~ 867 (927)
..+ ........+ ......++|+|++.+||+++ .|+.
T Consensus 239 --------------~~~--------------~~~~~~~~~------------~~~v~~l~~sp~~~~lasg~----~Dg~ 274 (342)
T d1yfqa_ 239 --------------RCH--------------RLNLKDTNL------------AYPVNSIEFSPRHKFLYTAG----SDGI 274 (342)
T ss_dssp --------------ECC--------------CCCTTCCSS------------CCCEEEEEECTTTCCEEEEE----TTSC
T ss_pred --------------eee--------------eeccCCCcc------------cccceeEEecCCccEEEEEC----CCCE
Confidence 000 000000011 12233467999999999988 7899
Q ss_pred ccccCchhhccccc--cCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeecCCCcc
Q 002407 868 SATWPEEKLVLTAR--NRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNFGLPV 925 (927)
Q Consensus 868 v~~W~~e~l~~~~~--~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~~glP~ 925 (927)
+++|+.+....... +..+.. .++|+|+|.+|++|+.|+.+++|..++..+
T Consensus 275 v~vWD~~~~~~l~~~~~~~~~~--------~~~~s~~~~~l~~a~sdd~~~~~~~~~~~~ 326 (342)
T d1yfqa_ 275 ISCWNLQTRKKIKNFAKFNEDS--------VVKIACSDNILCLATSDDTFKTNAAIDQTI 326 (342)
T ss_dssp EEEEETTTTEEEEECCCCSSSE--------EEEEEECSSEEEEEEECTHHHHCSSSCTTS
T ss_pred EEEEECCCCcEEEEecCCCCCE--------EEEEEeCCCEEEEEEcCCcEEEeeeeCCCc
Confidence 99999874322111 111111 368899999999999999999998776554
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.2e-23 Score=218.29 Aligned_cols=275 Identities=19% Similarity=0.341 Sum_probs=195.8
Q ss_pred eeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccc
Q 002407 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG 492 (927)
Q Consensus 413 ~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~ 492 (927)
.++|.+....++++|+.+++|++|+..++++ .++|.+|.+.|++|+| ++++|+||+.|+.|++|++..+....
T Consensus 17 ~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~-----~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~ 89 (293)
T d1p22a2 17 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC-----KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN 89 (293)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSCCE-----EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred CEEEEEEcCCEEEEEeCCCeEEEEECCCCcE-----EEEEecCCCCEeeeec--ccceeecccccccccccccccccccc
Confidence 3555555567889999999999999876543 4677899999999987 67899999999999999998876554
Q ss_pred eeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEE
Q 002407 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLD 572 (927)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~ 572 (927)
.... ...... ...+....++.+...+.+..+.... .........+..|...|..
T Consensus 90 ~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~v~~ 143 (293)
T d1p22a2 90 TLIH-----HCEAVL--HLRFNNGMMVTCSKDRSIAVWDMAS-------------------PTDITLRRVLVGHRAAVNV 143 (293)
T ss_dssp EECC-----CCSCEE--EEECCTTEEEEEETTSCEEEEECSS-------------------SSCCEEEEEECCCSSCEEE
T ss_pred cccc-----cccccc--cccccccceeecccccceeEeeccc-------------------ccccccccccccccccccc
Confidence 4321 111111 1122222333333333332111100 0011234566789999998
Q ss_pred EEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC-C
Q 002407 573 LSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH-E 650 (927)
Q Consensus 573 l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~-~ 650 (927)
+.+.+ ..+++++.|++|++||+.+++++..+. +...|..+.++ +.+|++++.|+.|++||+.+.+.+.....+ .
T Consensus 144 ~~~~~-~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 219 (293)
T d1p22a2 144 VDFDD-KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 219 (293)
T ss_dssp EEEET-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred ceecc-cccccccCCCceeeecCCCCcEEEEEcccccccccccCC---CCeEEEecCCCEEEEEecccceeeeeecccce
Confidence 88865 467889999999999999999988887 77888888775 468999999999999999998887755544 4
Q ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
.+. .+.+++.+|++|+.||.|++||+....................|...|++++|++ . +|++++.|++|+|||
T Consensus 220 ~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~--~-~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 220 LVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--F-QIVSSSHDDTILIWD 293 (293)
T ss_dssp CEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS--S-CEEECCSSSEEEEEC
T ss_pred eee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC--C-EEEEEecCCEEEEeC
Confidence 444 4567889999999999999999865332221111111222357999999999965 3 799999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=8.3e-23 Score=228.95 Aligned_cols=321 Identities=9% Similarity=0.072 Sum_probs=208.5
Q ss_pred CCeEEEccCceEEEEeccCcccccc-eeeeeEeecCCCCEEEEEE------cC-CCCEEEEEeCCCcEEEEecCcCcccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTA-LYKCQEIQAHNGSIWSIKF------SL-DGRYLASAGEDCVIHVWQVVESERKG 492 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~-l~~~q~L~gH~~~I~~vaf------Sp-dG~~LaSgs~DgtVrVWdv~~~~~~~ 492 (927)
..++++++.++.|++|+....+... .........|...+..+.+ +. ++.++++++.||.|++|++.......
T Consensus 24 ~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~ 103 (393)
T d1sq9a_ 24 NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETK 103 (393)
T ss_dssp SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTC
T ss_pred CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCcee
Confidence 4678899999999999976544321 1112233456655443332 21 34578899999999999987665443
Q ss_pred eeec-----ccccCccccEEEEccCCC-----CCeecccccCCceeeecccccccc-cccccCcccccceEeecCCCceE
Q 002407 493 ELLE-----KQEDGHLNMLLLANGSPE-----PTSLSPKHLDNHLEKKRRGRSINR-KSLSLDHMVVPETVFALSDKPIC 561 (927)
Q Consensus 493 ~l~~-----~~~~~~~~~v~~v~~spd-----~~~la~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~v~~~s~k~i~ 561 (927)
.+.. .....+...+..+.+.++ +.+++.+..++.+..+........ ......... ...+ .....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~----~~~~-~~~~~ 178 (393)
T d1sq9a_ 104 KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP----TLEL-QGTVE 178 (393)
T ss_dssp CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC----EEEE-EEEEC
T ss_pred eeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecc----ceec-cccee
Confidence 3321 111122333444444443 456666666776654432211100 000000000 0000 01111
Q ss_pred EEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-------cCCceEEEEEccCCCCEEEEEECCCc---
Q 002407 562 SFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-------HSDYVTCIQFNPVDDRYFISGSLDAK--- 631 (927)
Q Consensus 562 ~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-------h~~~V~~v~fsp~dg~~L~sgs~Dg~--- 631 (927)
....+...+++++|+|+++|++|+.|++|+|||+.+++++..+. |...|++|+|+| ++++|++|+.|++
T Consensus 179 ~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~ 257 (393)
T d1sq9a_ 179 SPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGC 257 (393)
T ss_dssp CSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEE
T ss_pred cccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc-ccceeeeecCCCCcce
Confidence 22345667899999999999999999999999999998877653 789999999999 9999999999875
Q ss_pred EEEEeCCCCcEEEec--------------cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccccc
Q 002407 632 VRIWSIPERQVVDWN--------------DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKR 697 (927)
Q Consensus 632 I~IWDl~t~~~v~~~--------------~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~ 697 (927)
|++||+.+++.+..+ .|...|++++|+|++++|++|+.|++|+|||+.+++++..+.
T Consensus 258 i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~--------- 328 (393)
T d1sq9a_ 258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN--------- 328 (393)
T ss_dssp EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE---------
T ss_pred eeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEEC---------
Confidence 999999998776543 467889999999999999999999999999999999887753
Q ss_pred CCCCCeE----EEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 698 SHQRKIT----GFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 698 ~h~~~Vt----sl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
+|...|. .++|.|++. .+++++ +|+.. +....... .........|++++.|+.|++|.-
T Consensus 329 gH~~~v~~~~~~~~~~~~~~-~~~~~~------~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 329 MHCDDIEIEEDILAVDEHGD-SLAEPG------VFDVK-----FLKKGWRS----GMGADLNESLCCVCLDRSIRWFRE 391 (393)
T ss_dssp CCGGGCSSGGGCCCBCTTSC-BCSSCC------EEEEE-----EECTTTSB----STTCTTSCEEEEEETTTEEEEEEE
T ss_pred CcCCcccCCccEEEECCCCC-EEEEcc------cceEE-----ECccCcee----ccccCCCCEEEEEEcCCeEEEEeC
Confidence 6666654 477888876 333222 23210 00000000 000123456899999999999973
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.4e-22 Score=215.25 Aligned_cols=247 Identities=16% Similarity=0.203 Sum_probs=184.0
Q ss_pred EEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCcc
Q 002407 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (927)
Q Consensus 424 ~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~ 503 (927)
+++|+.+++|++|+..+. ..+|...|.+++|++++ .|++++.|++|++|++...+..
T Consensus 24 l~sgs~Dg~v~~Wd~~~~----------~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~~------------ 80 (287)
T d1pgua2 24 LISGSYDGRIMEWSSSSM----------HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFG------------ 80 (287)
T ss_dssp TEEEETTSCEEETTTTEE----------ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECS------------
T ss_pred EEEEeCCCeEEEEECCCC----------CCCCCCCEEEEEecCCC-eEEEEeeccccccccccccccc------------
Confidence 688999999999986532 36899999999999765 5899999999999998654321
Q ss_pred ccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEE
Q 002407 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLS 583 (927)
Q Consensus 504 ~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~S 583 (927)
..+..+.+.+++..++....+... .++....+.+..+. +...+.++.... ..+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~v 135 (287)
T d1pgua2 81 SQPKVASANNDGFTAVLTNDDDLL-----------------------ILQSFTGDIIKSVR-LNSPGSAVSLSQ-NYVAV 135 (287)
T ss_dssp SCEEEEEECSSSEEEEEETTSEEE-----------------------EEETTTCCEEEEEE-CSSCEEEEEECS-SEEEE
T ss_pred cceeeeeeccCCceEEEeecccce-----------------------eeeccceeeeeecc-ccceeeeeeccC-cceee
Confidence 223455666776666655443322 11122233444444 334455544433 55666
Q ss_pred EeCC-CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE--eccCCCcEEEEEEC
Q 002407 584 SSMD-KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD--WNDLHEMVTAACYT 658 (927)
Q Consensus 584 gs~D-gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~--~~~~~~~V~sla~s 658 (927)
++.+ +.|++|++...+....+. |...|++++|+| ++.+|++|+.||.|++||+.+++.+. +..|...|.+++|+
T Consensus 136 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~ 214 (287)
T d1pgua2 136 GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWK 214 (287)
T ss_dssp EETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEEC
T ss_pred eccccceeeeeeccccceeeeeeeccCCceeEEEecc-Cccccccccccccccceeecccccccccccccccccceeeec
Confidence 6665 579999998776655554 778999999999 99999999999999999999988764 44567889999998
Q ss_pred CC----------CCEEEEEECCCeEEEEECCCCe-eeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 659 PD----------GQGALVGSYKGSCHLYNTSENK-LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 659 pd----------g~~l~tgs~Dg~I~IwDl~~~~-~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
|. +.+|++|+.|+.|+|||+.... .... ..+|...|++++|+|++ .|++++.|+.|++
T Consensus 215 p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~---------~~~h~~~V~~v~~~~~~--~l~s~g~D~~v~i 283 (287)
T d1pgua2 215 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA---------LNAHKDGVNNLLWETPS--TLVSSGADACIKR 283 (287)
T ss_dssp CCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE---------TTSSTTCEEEEEEEETT--EEEEEETTSCEEE
T ss_pred ccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEE---------eCCCCCCeEEEEECCCC--EEEEEECCCeEEE
Confidence 75 4689999999999999997643 3322 24899999999999975 6899999999999
Q ss_pred EEC
Q 002407 728 VDG 730 (927)
Q Consensus 728 wD~ 730 (927)
|+.
T Consensus 284 W~i 286 (287)
T d1pgua2 284 WNV 286 (287)
T ss_dssp EEE
T ss_pred EEE
Confidence 983
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.90 E-value=7.9e-23 Score=222.60 Aligned_cols=283 Identities=11% Similarity=0.072 Sum_probs=214.1
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCC--ceeeeccccccc
Q 002407 461 SIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN--HLEKKRRGRSIN 537 (927)
Q Consensus 461 ~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~--~i~~~~~~~~~~ 537 (927)
...||| ||++||+++ +|.|+||++..+.... ..|...+..+.|+||+..|+..+.+. .+
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-------~~~~~~v~~~~~spDg~~l~~~~~~~g~~v---------- 68 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-------VPEPLRIRYVRRGGDTKVAFIHGTREGDFL---------- 68 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-------CSCCSCEEEEEECSSSEEEEEEEETTEEEE----------
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEEE-------ccCCCCEEEEEECCCCCEEEEEEcCCCCEE----------
Confidence 467999 999999987 5799999998775432 24567789999999999887754432 22
Q ss_pred ccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEE
Q 002407 538 RKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQF 615 (927)
Q Consensus 538 ~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~f 615 (927)
.+|+.....+..+..|...|.+++|+|+ .+|++++.++.+++|++.++++...+. |...+.+++|
T Consensus 69 -------------~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (360)
T d1k32a3 69 -------------GIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 135 (360)
T ss_dssp -------------EEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred -------------EEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhh
Confidence 5677777888889999999999999999 789999999999999999999988887 8889999999
Q ss_pred ccCCCCEEEEEE----------CCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 616 NPVDDRYFISGS----------LDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 616 sp~dg~~L~sgs----------~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
+| ++++|+.+. .++.+++|++.+++......+...+..++|+|+|++|++++.++.+.+|+........
T Consensus 136 sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~ 214 (360)
T d1k32a3 136 SD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF 214 (360)
T ss_dssp CT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEEC
T ss_pred cc-ceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceee
Confidence 99 999998654 3456999999999988888888899999999999999999999999999976543221
Q ss_pred ecc-----cccc-----------------------------cccccCCCCCeEEEEEcCCCCc------------EEEEE
Q 002407 686 KSP-----INLQ-----------------------------NKKKRSHQRKITGFQFAPGSSS------------EVLVT 719 (927)
Q Consensus 686 ~~~-----i~~~-----------------------------~~~~~~h~~~Vtsl~fspdg~~------------~Llsg 719 (927)
... +... .............+...+++.. +++.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (360)
T d1k32a3 215 EVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGA 294 (360)
T ss_dssp CSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCC
T ss_pred ccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEec
Confidence 100 0000 0000011223344444443211 23344
Q ss_pred ECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 720 SADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 720 s~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
+.++.|++||....... .+ ...+..++|+|||++|++++.||.|++||++.++...
T Consensus 295 ~~~~~i~~~d~~~~~~~--~~--~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~ 350 (360)
T d1k32a3 295 PEKGVLLKYDVKTRKVT--EV--KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350 (360)
T ss_dssp CCCEEEEEEETTTCCEE--EE--EEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCE
T ss_pred CCCCEEEEEECCCCeEE--Ee--cCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcce
Confidence 56788999996543221 11 2347899999999999999999999999999876543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.89 E-value=2.8e-23 Score=226.25 Aligned_cols=192 Identities=13% Similarity=0.033 Sum_probs=157.3
Q ss_pred EEEecC-CcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC--cEEEEeCCCCcEEEeccC
Q 002407 572 DLSWSK-SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA--KVRIWSIPERQVVDWNDL 648 (927)
Q Consensus 572 ~l~~sp-d~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg--~I~IWDl~t~~~v~~~~~ 648 (927)
.-.||| |+.+++...++.|++||+..+..++ +.|...|.+++|+| ++++|++++.+. .|++||+.+++...+..+
T Consensus 7 ~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~-~~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~ 84 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-VPEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKAEKFEEN 84 (360)
T ss_dssp EEEEEECGGGCEEEEETTEEEEECTTSSBEEE-CSCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCCEEECCCC
T ss_pred cccccCCCCCEEEEEECCeEEEEECCCCcEEE-ccCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCcEEEeeCC
Confidence 356999 7554444456899999999887766 47999999999999 999988776553 699999999999999999
Q ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE--------
Q 002407 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS-------- 720 (927)
Q Consensus 649 ~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs-------- 720 (927)
...+.+++|+|+|++|++++.++.+++|++.+++..... ..+...+.+++|+|++. +|+.+.
T Consensus 85 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~spdg~-~la~~~~~~~~~~~ 154 (360)
T d1k32a3 85 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE---------RSREAMITDFTISDNSR-FIAYGFPLKHGETD 154 (360)
T ss_dssp CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---------ECSSSCCCCEEECTTSC-EEEEEEEECSSTTC
T ss_pred CceEEeeeecccccccceeccccccccccccccceeeee---------ecccccccchhhcccee-eeeeecccccccee
Confidence 999999999999999999999999999999998876654 36777889999999998 555433
Q ss_pred --CCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 721 --ADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 721 --~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
.++.+++||....... ....+...+..++|+|||++|++++.++.+++|+.....
T Consensus 155 ~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~ 211 (360)
T d1k32a3 155 GYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 211 (360)
T ss_dssp SCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred eccccceeeeccccCcee-eecccccccccccccCCCCEEEEEeCCCceEcccccccc
Confidence 3456899997654433 333456677889999999999999999999999976543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=8.2e-21 Score=216.58 Aligned_cols=346 Identities=10% Similarity=0.000 Sum_probs=240.3
Q ss_pred EEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCcc
Q 002407 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (927)
Q Consensus 424 ~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~ 503 (927)
+++...+++|.+||..+.++. +.|..|. .+..++|||||++|++++.|++|++||+.+++.....
T Consensus 35 ~v~~~d~g~v~v~D~~t~~v~-----~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~--------- 99 (432)
T d1qksa2 35 SVTLRDAGQIALIDGSTYEIK-----TVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA--------- 99 (432)
T ss_dssp EEEETTTTEEEEEETTTCCEE-----EEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE---------
T ss_pred EEEEcCCCEEEEEECCCCcEE-----EEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEE---------
Confidence 577788899999998877664 3445564 6999999999999999999999999999876532211
Q ss_pred ccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEE-
Q 002407 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHL- 581 (927)
Q Consensus 504 ~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L- 581 (927)
.+....+|.+.+....|+|| .+|
T Consensus 100 -------------------------------------------------------~i~~~~~~~~~~~s~~~SpDG~~l~ 124 (432)
T d1qksa2 100 -------------------------------------------------------EIKIGSEARSIETSKMEGWEDKYAI 124 (432)
T ss_dssp -------------------------------------------------------EEECCSEEEEEEECCSTTCTTTEEE
T ss_pred -------------------------------------------------------EEecCCCCCCeEEecccCCCCCEEE
Confidence 01112235556666778888 444
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEe------------cCCceEEEEEccCCCCEE-EEEECCCcEEEEeCCCCcEEE--ec
Q 002407 582 LSSSMDKTVRLWHLSSKTCLKIFS------------HSDYVTCIQFNPVDDRYF-ISGSLDAKVRIWSIPERQVVD--WN 646 (927)
Q Consensus 582 ~Sgs~DgtV~lWDl~t~~~~~~~~------------h~~~V~~v~fsp~dg~~L-~sgs~Dg~I~IWDl~t~~~v~--~~ 646 (927)
++++.+++|+|||..+++++..+. +......+.++| ++.++ ++...++.|.+||..+.+... .+
T Consensus 125 vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i 203 (432)
T d1qksa2 125 AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIVNVKETGKILLVDYTDLNNLKTTEI 203 (432)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEETTCSSEEEEEEE
T ss_pred EEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC-CCCEEEEEEccCCeEEEEEccCCCcceEEEE
Confidence 678889999999999999988764 345567889999 66665 566678999999998876443 44
Q ss_pred cCCCcEEEEEECCCCCEEEEEECC-CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE-ECCCc
Q 002407 647 DLHEMVTAACYTPDGQGALVGSYK-GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT-SADSR 724 (927)
Q Consensus 647 ~~~~~V~sla~spdg~~l~tgs~D-g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg-s~Dg~ 724 (927)
.....+..++|+|+|+++++++.+ +.+.++|..+++......... ...+......+.+...+. ...+. ..++.
T Consensus 204 ~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~g~-~~~~~~lg~~~ 278 (432)
T d1qksa2 204 SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG----QTPHPGRGANFVHPTFGP-VWATSHMGDDS 278 (432)
T ss_dssp ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS----SSBCCTTCEEEEETTTEE-EEEEEBSSSSE
T ss_pred cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCc----cccccCcccceecCCCCc-eecccccCCce
Confidence 556788999999999988887764 579999999988776644221 123444455555555443 33333 34788
Q ss_pred EEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEec
Q 002407 725 IRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPW 804 (927)
Q Consensus 725 I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~ 804 (927)
|.+|+...... ..+...+....+++++..+++++.+..+++|...+....... .
T Consensus 279 v~~~~~~~~~~----~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~------~---------------- 332 (432)
T d1qksa2 279 VALIGTDPEGH----PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEI------S---------------- 332 (432)
T ss_dssp EEEEECCTTTC----TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHH------H----------------
T ss_pred EEecccccccc----cccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCe------e----------------
Confidence 99998543321 123446788899999999999999999999976542210000 0
Q ss_pred CCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccccccCC
Q 002407 805 PGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTARNRS 884 (927)
Q Consensus 805 ~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~~~~~s 884 (927)
..+ +.||++.|++++ .|+.+++|+..+...+..|..
T Consensus 333 ---------------------------------------~sv-~vpDg~~la~~s----~d~~~k~w~~~~~~~l~~~~~ 368 (432)
T d1qksa2 333 ---------------------------------------GSV-AVFDIKAMTGDG----SDPEFKTLPIAEWAGITEGQP 368 (432)
T ss_dssp ---------------------------------------TCE-EEEEGGGCCCSS----SCCCEEEECHHHHHTCCSSCC
T ss_pred ---------------------------------------eEE-EEEechhhcccc----cCCceEecccccccccCCCCC
Confidence 001 126677777766 788899998765533333333
Q ss_pred CceecccCCCCCcccCCCCCEEEEEc-----CCCcEEEeecCCC
Q 002407 885 PRTSLDISNGISSSISAWGMVIVTAG-----LRGEIRAYQNFGL 923 (927)
Q Consensus 885 ~v~s~~~~~~~~~a~S~dG~vLvTgs-----~DG~IrvW~~~gl 923 (927)
.+. .++|||||+.|+... .+|.|+||+.-.+
T Consensus 369 ~v~--------~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~ 404 (432)
T d1qksa2 369 RVV--------QGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 404 (432)
T ss_dssp EEE--------EEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred cEE--------EeEECCCCCEEEEEEecCCCCCCcEEEEECCCc
Confidence 333 368999999885553 4689999985544
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.86 E-value=4.3e-19 Score=187.82 Aligned_cols=266 Identities=13% Similarity=0.126 Sum_probs=203.6
Q ss_pred EEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEecCcCcccceeecccccCcc
Q 002407 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (927)
Q Consensus 425 ~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~La-Sgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~ 503 (927)
+++..+++|.+||..++++.+. +.. ...+..|+|+|||++|+ +++.++.|++||+.+++.+..+
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~-----i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~--------- 70 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTAT-----IPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV--------- 70 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEE-----EEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE---------
T ss_pred EEECCCCEEEEEECCCCeEEEE-----EEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee---------
Confidence 3567788999999888865543 332 35578999999999875 6668999999999876543332
Q ss_pred ccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-c-EE
Q 002407 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q-HL 581 (927)
Q Consensus 504 ~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~-~L 581 (927)
..|. .+..+.|+++ . .+
T Consensus 71 ------------------------------------------------------------~~~~-~~~~~~~~~~~~~~~ 89 (301)
T d1l0qa2 71 ------------------------------------------------------------PAGS-SPQGVAVSPDGKQVY 89 (301)
T ss_dssp ------------------------------------------------------------ECSS-SEEEEEECTTSSEEE
T ss_pred ------------------------------------------------------------eccc-ccccccccccccccc
Confidence 2232 3567889888 4 35
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEE-EEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCC
Q 002407 582 LSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPD 660 (927)
Q Consensus 582 ~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~-sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spd 660 (927)
+++..++.+.+|+..+++....+.+...+.++.|+| ++..++ ++..++.+.+|+..+...+........+..++++|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (301)
T d1l0qa2 90 VTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPD 168 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTT
T ss_pred ccccccceeeecccccceeeeeccccccceEEEeec-CCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeecc
Confidence 566778899999999999999999888899999999 777664 556678899999999999888888888999999999
Q ss_pred CCEEEEEECC-CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE--CCCcEEEEECCcceEEE
Q 002407 661 GQGALVGSYK-GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS--ADSRIRVVDGIDLVHKF 737 (927)
Q Consensus 661 g~~l~tgs~D-g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs--~Dg~I~VwD~~~~~~~~ 737 (927)
+..++++..+ +.+.+|+.......... .....+..++|++++..+++++. .++.|++||..+.....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~ 238 (301)
T d1l0qa2 169 GTKVYVANFDSMSISVIDTVTNSVIDTV----------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA 238 (301)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEE----------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred ccceeeecccccccccccccceeeeecc----------cccCCcceeeccccccccccccccceeeeeeeeecCCCeEEE
Confidence 9998888765 56778888777665543 33455788999999885544443 34789999976654433
Q ss_pred EeecCCcceEEEEEecCCCEE-EEEECCCcEEEEECCCCCCc
Q 002407 738 KGFRNTNSQISASLTANGRYV-VSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 738 ~~~~~~~~v~sv~fspdg~~L-asgs~Dg~I~IWdl~s~~~~ 778 (927)
... ....+..++|+|||++| ++++.|+.|+|||+++++..
T Consensus 239 ~~~-~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~ 279 (301)
T d1l0qa2 239 RIP-VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT 279 (301)
T ss_dssp EEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEc-CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence 322 34567899999999987 56778999999999987544
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.83 E-value=1.3e-18 Score=196.91 Aligned_cols=327 Identities=13% Similarity=0.076 Sum_probs=211.2
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCc
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~ 502 (927)
++++...+++|++||..++++. ++|..|. .+..|+|||||++|++++.|++|++||+.+++...........++
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~-----~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~ 107 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIV-----KVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEA 107 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEE-----EEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEE
T ss_pred EEEEEcCCCEEEEEECCCCcEE-----EEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCC
Confidence 3466788999999998877554 4556664 599999999999999999999999999998875544333334566
Q ss_pred cccEEEEccCCCCCeecccc-cCCceeeecccccccccccccCcccccceEeecCCCceEEEcc-----------CCCCE
Q 002407 503 LNMLLLANGSPEPTSLSPKH-LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG-----------HLDDV 570 (927)
Q Consensus 503 ~~~v~~v~~spd~~~la~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~g-----------H~~~V 570 (927)
...+..+.|+||+..++++. .+..+..+... ...++..+.+ +....
T Consensus 108 ~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (426)
T d1hzua2 108 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE----------------------TLEPKQIVSTRGMTVDTQTYHPEPRV 165 (426)
T ss_dssp EEEEECCSTTCTTTEEEEEEEESSEEEEEETT----------------------TCCEEEEEECCEECSSSCCEESCCCE
T ss_pred cceEEeeeecCCCCEEEEeecCCCeEEEEcCC----------------------ccceeEEeeccCCCccceeecCCCce
Confidence 77888999999999875543 44444222111 1222333333 33344
Q ss_pred EEEEecCC-cEE-EEEeCCCcEEEEeCCCCc--EEEEEecCCceEEEEEccCCCCEEEEEE-CCCcEEEEeCCCCcEEEe
Q 002407 571 LDLSWSKS-QHL-LSSSMDKTVRLWHLSSKT--CLKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPERQVVDW 645 (927)
Q Consensus 571 ~~l~~spd-~~L-~Sgs~DgtV~lWDl~t~~--~~~~~~h~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~t~~~v~~ 645 (927)
..+.++++ ..+ ++....+.+.+++..... .+..+.+...+..+.|+| ++++++++. .+..+.+|+..+++.+..
T Consensus 166 ~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~a~~~~~~~~~~~~~~~~~~~~ 244 (426)
T d1hzua2 166 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSAL 244 (426)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT-TSCEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred eEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECC-CCcEEEeeeecccceeeeecccccEEEE
Confidence 55666665 333 333344566666666554 334456888899999999 888777665 456699999999988764
Q ss_pred ccCC---CcEEEEEECCCCCE-E--EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEE-
Q 002407 646 NDLH---EMVTAACYTPDGQG-A--LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV- 718 (927)
Q Consensus 646 ~~~~---~~V~sla~spdg~~-l--~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Lls- 718 (927)
.... .....+.+...+.. + +....++.+.+|+.......... .........|...+..++|+|++. +|++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~--~~~~~~l~g~~~~v~~v~~sPdg~-~l~v~ 321 (426)
T d1hzua2 245 VDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA--WKKVAELQGQGGGSLFIKTHPKSS-HLYVD 321 (426)
T ss_dssp EECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTB--TSEEEEEECSSSCCCCEECCTTCS-EEEEC
T ss_pred eccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccccc--ceEeEEEecCCCceeEEEcCCCCc-eEEEe
Confidence 4332 22223333333322 2 22345778888887654211100 000112347888999999999998 5553
Q ss_pred ------EECCCcEEEEECCcc--eEEEEe-------ecCCcceEEEEEecCCCEEEEE-----ECCCcEEEEECCCCCCc
Q 002407 719 ------TSADSRIRVVDGIDL--VHKFKG-------FRNTNSQISASLTANGRYVVSA-----SEDSYVYVWKYEAESRP 778 (927)
Q Consensus 719 ------gs~Dg~I~VwD~~~~--~~~~~~-------~~~~~~v~sv~fspdg~~Lasg-----s~Dg~I~IWdl~s~~~~ 778 (927)
+..+++|+|||..+. ...+.. ..+...+..++|+|||++|+.+ +.++.|+|||.++.+..
T Consensus 322 ~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~ 401 (426)
T d1hzua2 322 TTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 401 (426)
T ss_dssp CTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred ecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEE
Confidence 345789999996543 222211 1345568899999999977543 35888999999987654
Q ss_pred ccc
Q 002407 779 SRS 781 (927)
Q Consensus 779 ~~~ 781 (927)
...
T Consensus 402 ~~i 404 (426)
T d1hzua2 402 AVV 404 (426)
T ss_dssp EEE
T ss_pred EEE
Confidence 333
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=2.2e-19 Score=192.82 Aligned_cols=276 Identities=11% Similarity=0.069 Sum_probs=192.6
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~L-aSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
++++++..+++|.+||..+.++.... .+..+...+.+++|+|||++| ++++.++.|.+||+.+++.+..+......
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i---~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~ 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVI---TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEE---ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEE---ECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc
Confidence 56788889999999999877654332 123455678899999999987 46678999999999988766554211111
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-c
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q 579 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~ 579 (927)
.. ...+..++|+|+ +
T Consensus 79 ~~----------------------------------------------------------------~~~~~~v~~s~dg~ 94 (337)
T d1pbyb_ 79 ER----------------------------------------------------------------VKSLFGAALSPDGK 94 (337)
T ss_dssp EE----------------------------------------------------------------EECTTCEEECTTSS
T ss_pred cc----------------------------------------------------------------ccceeeEEEcCCCc
Confidence 11 111223455555 3
Q ss_pred EEEEEe------------CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc
Q 002407 580 HLLSSS------------MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND 647 (927)
Q Consensus 580 ~L~Sgs------------~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~ 647 (927)
+++++. .+..+.+||..+++.+..+.+...+..++|+| +++++++++. .+.+||..+++......
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~ 171 (337)
T d1pbyb_ 95 TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKP 171 (337)
T ss_dssp EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEEC
T ss_pred EEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEee
Confidence 343332 56789999999999999999888899999999 9999988864 47889999988776554
Q ss_pred CCCcEEEEEECCCCCE------------------------EEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCe
Q 002407 648 LHEMVTAACYTPDGQG------------------------ALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 648 ~~~~V~sla~spdg~~------------------------l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
.........+.|++.. +..+..++.+.+|++.++....... ..+...+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 243 (337)
T d1pbyb_ 172 IQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV--------RIMDVFY 243 (337)
T ss_dssp STTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE--------EECSSCE
T ss_pred cCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe--------cCCCcce
Confidence 4332222222222221 1112234568889988877654322 3566778
Q ss_pred EEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 704 TGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
..+.+.|++. +++.+ ++.|++||..+........ ....+.+++|+|||++|++++.|+.|+|||+++.+...
T Consensus 244 ~~~~~~~~~~-~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~ 315 (337)
T d1pbyb_ 244 FSTAVNPAKT-RAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp EEEEECTTSS-EEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred EEEEecccce-EEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence 8899999876 44443 5899999977655444332 34567899999999999999999999999999876543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.81 E-value=3.9e-18 Score=192.95 Aligned_cols=331 Identities=9% Similarity=0.070 Sum_probs=202.1
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe--c----cCCCcEE
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW--N----DLHEMVT 653 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~--~----~~~~~V~ 653 (927)
++++.+.|++|+|||+.+++.+.++.+...+..++|+| |+++|++++.|+.|++||+.+++.... . .+...+.
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 35778899999999999999999999667899999999 999999999999999999998864332 1 2334566
Q ss_pred EEEECCCCCEEEEE-ECCCeEEEEECCCCeeeeeccccccc--ccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 654 AACYTPDGQGALVG-SYKGSCHLYNTSENKLQQKSPINLQN--KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 654 sla~spdg~~l~tg-s~Dg~I~IwDl~~~~~~~~~~i~~~~--~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
+++|+|||++++++ ..++.+.+||..++............ .....+......+.+++++..++++....+.+.+++.
T Consensus 113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~ 192 (426)
T d1hzua2 113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY 192 (426)
T ss_dssp CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence 77788999987555 57899999999998877654321111 0111344456677778877755555555566777764
Q ss_pred Ccce-EEEEeecCCcceEEEEEecCCCEEEEEEC-CCcEEEEECCCCCCcccccc--cceeeeeeeec-CC-CeEEEEec
Q 002407 731 IDLV-HKFKGFRNTNSQISASLTANGRYVVSASE-DSYVYVWKYEAESRPSRSKS--ITVTHSYEHFH-CQ-DVSVAIPW 804 (927)
Q Consensus 731 ~~~~-~~~~~~~~~~~v~sv~fspdg~~Lasgs~-Dg~I~IWdl~s~~~~~~~~~--~~~~~~~~~~~-~~-~v~vavs~ 804 (927)
.... ...........+..+.|+|++++++++.. +..+.+|+..+......... .........+. .. ....+...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (426)
T d1hzua2 193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272 (426)
T ss_dssp SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence 3221 11222234566889999999999888764 55688999988654322211 00001111111 11 12222222
Q ss_pred --CCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEecc---ccccCccccccCchhhccc
Q 002407 805 --PGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATN---SYFFDRISATWPEEKLVLT 879 (927)
Q Consensus 805 --~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~---~~~~d~~v~~W~~e~l~~~ 879 (927)
++....+.........+. . .....+.++. .....++||||+++|+.... ....++++++|+...+...
T Consensus 273 ~~d~~v~~~~~~~~~~~~~~---~--~~~~~l~g~~--~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~ 345 (426)
T d1hzua2 273 LGDGSISLIGTDPKNHPQYA---W--KKVAELQGQG--GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 345 (426)
T ss_dssp TTTCEEEEEECCTTTCTTTB---T--SEEEEEECSS--SCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCCceEEEeecccccccccc---c--eEeEEEecCC--CceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcC
Confidence 233344443332221111 0 0111222322 22334679999999996431 2335688999997644211
Q ss_pred c---------ccCCCceecccCCCCCcccCCCCCEE-EEE----cCCCcEEEeecCCC
Q 002407 880 A---------RNRSPRTSLDISNGISSSISAWGMVI-VTA----GLRGEIRAYQNFGL 923 (927)
Q Consensus 880 ~---------~~~s~v~s~~~~~~~~~a~S~dG~vL-vTg----s~DG~IrvW~~~gl 923 (927)
. .+......+ . .++|||||+.| |++ +.||.|+||....+
T Consensus 346 ~~~~~~~~~~~~~~~~~rv--~---~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~ 398 (426)
T d1hzua2 346 YQVLPIAEWADLGEGAKRV--V---QPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL 398 (426)
T ss_dssp CEEECHHHHHCCCSSCCCE--E---EEEECSSSSEEEEEECCCTTSCCEEEEEETTTT
T ss_pred eEEeccchhcccCCCCccE--E---EEEECCCCCEEEEEEecCCCCCCeEEEEECCCC
Confidence 0 010100000 0 36899999866 442 56899999985443
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.78 E-value=6.2e-17 Score=170.91 Aligned_cols=263 Identities=12% Similarity=0.129 Sum_probs=188.0
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEE-EEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECC
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYF-ISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTP 659 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L-~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~sp 659 (927)
+++.+.|++|.+||+.+++.++.+.....+..++|+| ++++| +++..++.|++||+.+++.+..+.....+..++|++
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~ 83 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP 83 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeC-CCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccc
Confidence 4567889999999999999999999888889999999 98877 566788999999999999988877778899999999
Q ss_pred CCCEEEEE-ECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEE
Q 002407 660 DGQGALVG-SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFK 738 (927)
Q Consensus 660 dg~~l~tg-s~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~ 738 (927)
++.++++. ..++.+.+|+..+++..... .+...+.++.|+|++..+++++..+..+.+|+.........
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (301)
T d1l0qa2 84 DGKQVYVTNMASSTLSVIDTTSNTVAGTV----------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT 153 (301)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEE----------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccccccccccccceeeecccccceeeeec----------cccccceEEEeecCCCeeeeeeccccceeeeeccccceeee
Confidence 99876655 45678999999998877654 34456788999999987677777889999999766544433
Q ss_pred eecCCcceEEEEEecCCCEEEEEECC-CcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCc
Q 002407 739 GFRNTNSQISASLTANGRYVVSASED-SYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTY 817 (927)
Q Consensus 739 ~~~~~~~v~sv~fspdg~~Lasgs~D-g~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~ 817 (927)
.. ....+..+.+++++.++++++.+ +.+.+|+........... ...
T Consensus 154 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~---------------------- 200 (301)
T d1l0qa2 154 VS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----------VEA---------------------- 200 (301)
T ss_dssp EE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----------CSS----------------------
T ss_pred cc-cCCCceEEEeeccccceeeecccccccccccccceeeeeccc----------ccC----------------------
Confidence 32 34457789999999998888766 456666665432111000 000
Q ss_pred eeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhcccc--ccCCCceecccCCCC
Q 002407 818 LDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTA--RNRSPRTSLDISNGI 895 (927)
Q Consensus 818 i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~~--~~~s~v~s~~~~~~~ 895 (927)
....++|++++..++.+... ..+..+..|+........ .+.....
T Consensus 201 ------------------------~~~~~~~~~~g~~~~v~~~~-~~~~~v~v~D~~t~~~~~~~~~~~~~~-------- 247 (301)
T d1l0qa2 201 ------------------------APSGIAVNPEGTKAYVTNVD-KYFNTVSMIDTGTNKITARIPVGPDPA-------- 247 (301)
T ss_dssp ------------------------EEEEEEECTTSSEEEEEEEC-SSCCEEEEEETTTTEEEEEEECCSSEE--------
T ss_pred ------------------------Ccceeecccccccccccccc-ceeeeeeeeecCCCeEEEEEcCCCCEE--------
Confidence 00112366777766654311 123456777765432211 1111111
Q ss_pred CcccCCCCCEE-EEEcCCCcEEEeec
Q 002407 896 SSSISAWGMVI-VTAGLRGEIRAYQN 920 (927)
Q Consensus 896 ~~a~S~dG~vL-vTgs~DG~IrvW~~ 920 (927)
.++|||||++| |+++.||+|++|+.
T Consensus 248 ~va~spdg~~l~va~~~~~~i~v~D~ 273 (301)
T d1l0qa2 248 GIAVTPDGKKVYVALSFCNTVSVIDT 273 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEET
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEC
Confidence 47999999976 78889999999983
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=1.2e-17 Score=190.14 Aligned_cols=310 Identities=11% Similarity=0.029 Sum_probs=199.4
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE--EEec----cCCCcEEE
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV--VDWN----DLHEMVTA 654 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~--v~~~----~~~~~V~s 654 (927)
+++.+.|++|.|||+.+++++..+.....+..++|+| |+++|++++.|+.|++||+.+++. +... .+...+.+
T Consensus 35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s 113 (432)
T d1qksa2 35 SVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS 113 (432)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence 5889999999999999999999998667899999999 999999999999999999988653 2222 22345556
Q ss_pred EEECCCCCEE-EEEECCCeEEEEECCCCeeeeeccccccc--ccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 002407 655 ACYTPDGQGA-LVGSYKGSCHLYNTSENKLQQKSPINLQN--KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 655 la~spdg~~l-~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~--~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~ 731 (927)
+.|+|||++| +++..++.|++||..+++........... .....+......+.++|++..++++...++.|.+||..
T Consensus 114 ~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~ 193 (432)
T d1qksa2 114 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT 193 (432)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred cccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEcc
Confidence 6778899986 67788999999999999887765432111 11124566788899999998777777888999999965
Q ss_pred cceE-EEEeecCCcceEEEEEecCCCEEEEEECC-CcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCC-ce
Q 002407 732 DLVH-KFKGFRNTNSQISASLTANGRYVVSASED-SYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPG-VG 808 (927)
Q Consensus 732 ~~~~-~~~~~~~~~~v~sv~fspdg~~Lasgs~D-g~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g-~~ 808 (927)
.... ..........+..+.|+|+|+++++++.+ +.|.+|+..+........... ...+.........+.+ ..
T Consensus 194 ~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~g~~ 268 (432)
T d1qksa2 194 DLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG-----QTPHPGRGANFVHPTFGPV 268 (432)
T ss_dssp CSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS-----SSBCCTTCEEEEETTTEEE
T ss_pred CCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCc-----cccccCcccceecCCCCce
Confidence 4321 22222344567889999999998887754 468888988754332211000 0001111111111111 11
Q ss_pred -eEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccccccCCCce
Q 002407 809 -DTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTARNRSPRT 887 (927)
Q Consensus 809 -~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~~~~~s~v~ 887 (927)
..+...+..+..+...... .+ .+. .......|+|++..+++++ .+....+|....+. .|. ..
T Consensus 269 ~~~~~lg~~~v~~~~~~~~~-~~-----~~~--~~v~~~~~~~~g~~~~~~s----~p~~~~lw~~~~~~---~~~-~~- 331 (432)
T d1qksa2 269 WATSHMGDDSVALIGTDPEG-HP-----DNA--WKILDSFPALGGGSLFIKT----HPNSQYLYVDATLN---PEA-EI- 331 (432)
T ss_dssp EEEEBSSSSEEEEEECCTTT-CT-----TTB--TSEEEEEECSCSCCCCEEC----CTTCSEEEEECTTC---SSH-HH-
T ss_pred ecccccCCceEEeccccccc-cc-----ccc--cEEEEEEEcCCCCeEEEEe----cCCccceeecccCC---CCC-Ce-
Confidence 1111223333333221110 00 011 1122346899999888876 56677788653321 111 00
Q ss_pred ecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 888 SLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 888 s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
.+ .+++ ||++.|++++.|+++|+|..
T Consensus 332 ----~~--sv~v-pDg~~la~~s~d~~~k~w~~ 357 (432)
T d1qksa2 332 ----SG--SVAV-FDIKAMTGDGSDPEFKTLPI 357 (432)
T ss_dssp ----HT--CEEE-EEGGGCCCSSSCCCEEEECH
T ss_pred ----ee--EEEE-EechhhcccccCCceEeccc
Confidence 11 1333 89999999999999999973
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.73 E-value=2.5e-17 Score=177.16 Aligned_cols=278 Identities=6% Similarity=-0.054 Sum_probs=186.4
Q ss_pred CCCCeEEEccCceEEEEeccCcccccceeeeeEee-cCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecCcCcccceeec
Q 002407 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVVESERKGELLE 496 (927)
Q Consensus 419 d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~-gH~~~I~~vafSpdG~~L-aSgs~DgtVrVWdv~~~~~~~~l~~ 496 (927)
.+..+++++..+++|.+||..++++. ++++ .|...+.+|+|+|||++| +++..++.|++||+.+++....+..
T Consensus 6 ~~~~~l~~~~~~~~v~v~D~~t~~~~-----~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 6 AGHEYMIVTNYPNNLHVVDVASDTVY-----KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEE-----EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred CCCcEEEEEcCCCEEEEEECCCCCEE-----EEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence 34467788888899999999877654 3344 466778999999999987 4556789999999998876655421
Q ss_pred ccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEec
Q 002407 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (927)
Q Consensus 497 ~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~s 576 (927)
..... .+...+..++|+
T Consensus 81 ~~~~~---------------------------------------------------------------~~~~~~~~v~~s 97 (346)
T d1jmxb_ 81 SSVPG---------------------------------------------------------------EVGRSMYSFAIS 97 (346)
T ss_dssp CCSTT---------------------------------------------------------------EEEECSSCEEEC
T ss_pred ccccc---------------------------------------------------------------ccCCceEEEEEe
Confidence 11000 001112234555
Q ss_pred CC-cEEEEE------------eCCCcEEEEeCCCCcEEEEE---ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC
Q 002407 577 KS-QHLLSS------------SMDKTVRLWHLSSKTCLKIF---SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 577 pd-~~L~Sg------------s~DgtV~lWDl~t~~~~~~~---~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~ 640 (927)
|+ .+|+++ ..+..+.+|+..+++....+ .....+..+.+++ ++.++++ ++.+.+|++.++
T Consensus 98 ~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~ 173 (346)
T d1jmxb_ 98 PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-DGSLYVA---GPDIYKMDVKTG 173 (346)
T ss_dssp TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-TSCEEEE---SSSEEEECTTTC
T ss_pred cCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC-CCEEEEe---CCcceEEEccCC
Confidence 55 333332 35788999999887654433 2445667777776 6665554 356999999998
Q ss_pred cEEEeccCCCcEEEEEECCCCCEE--------------------------EEEECCCeEEEEECCCCeeeeecccccccc
Q 002407 641 QVVDWNDLHEMVTAACYTPDGQGA--------------------------LVGSYKGSCHLYNTSENKLQQKSPINLQNK 694 (927)
Q Consensus 641 ~~v~~~~~~~~V~sla~spdg~~l--------------------------~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~ 694 (927)
+.+........+..+.++|++..+ +++..+..+.+||+.++.......
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 247 (346)
T d1jmxb_ 174 KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF------ 247 (346)
T ss_dssp CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE------
T ss_pred CEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEe------
Confidence 888766655555555555555433 223344567778887776554432
Q ss_pred cccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 695 KKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 695 ~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
..+...+..+.+++++.. ++... ++.|.+||.......... .....+.+++|+|||++|++++.|+.|+|||+++
T Consensus 248 --~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~d~~~~~~~~~~-~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t 322 (346)
T d1jmxb_ 248 --ADLTELYFTGLRSPKDPN-QIYGV-LNRLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 322 (346)
T ss_dssp --EECSSCEEEEEECSSCTT-EEEEE-ESEEEEEETTTTEEEEEE-ECSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred --ecccceeEEEEEeCCCCE-EEEec-CCeEEEEECCCCcEEEEE-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence 356778889999998874 44333 467999997654433222 2345688999999999999999999999999998
Q ss_pred CCCcc
Q 002407 775 ESRPS 779 (927)
Q Consensus 775 ~~~~~ 779 (927)
.+...
T Consensus 323 ~~~i~ 327 (346)
T d1jmxb_ 323 LEKVK 327 (346)
T ss_dssp TEEEE
T ss_pred CCEEE
Confidence 66543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=1.5e-15 Score=162.79 Aligned_cols=281 Identities=13% Similarity=0.157 Sum_probs=188.5
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCcCcccceeecccccC
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs-~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
+.++++.+++|++|+..... .+...+. ..|.+.|..|+|+|||++|++++ .|+.|++|++.......++.
T Consensus 6 v~v~~~~~~~I~v~~~~~~~--~l~~~~~-~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~------ 76 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEG--ALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA------ 76 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTS--CEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE------
T ss_pred EEEECCCCCcEEEEEEcCCC--CeEEEEE-EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe------
Confidence 45778899999999876432 1222233 35889999999999999996555 58999999987654322210
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~ 580 (927)
....+...+..++|+|+ .+
T Consensus 77 ------------------------------------------------------------~~~~~~~~p~~l~~spDg~~ 96 (333)
T d1ri6a_ 77 ------------------------------------------------------------AESALPGSLTHISTDHQGQF 96 (333)
T ss_dssp ------------------------------------------------------------EEEECSSCCSEEEECTTSSE
T ss_pred ------------------------------------------------------------eecccCCCceEEEEcCCCCE
Confidence 00113344667999999 66
Q ss_pred EEEEeC-CCcEEEEeCCCCcEEEEEe---cCCceEEEEEccCCCCEEEEEECC-CcEEEEeCCCCcEEE-------eccC
Q 002407 581 LLSSSM-DKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLD-AKVRIWSIPERQVVD-------WNDL 648 (927)
Q Consensus 581 L~Sgs~-DgtV~lWDl~t~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs~D-g~I~IWDl~t~~~v~-------~~~~ 648 (927)
|++++. ++.|.+|+........... +...+.++.|+| +++++++++.+ ..|.+|+........ ....
T Consensus 97 l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (333)
T d1ri6a_ 97 VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE 175 (333)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST
T ss_pred EeecccCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCCcceeeeceeeeeec
Confidence 777764 7789999988776554433 677889999999 88888877654 569999987643221 2233
Q ss_pred CCcEEEEEECCCCCEEEEEE-CCCeEEEEECCCCeeeee--cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcE
Q 002407 649 HEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQK--SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI 725 (927)
Q Consensus 649 ~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~~~~~~~--~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I 725 (927)
...+..++|++++.+++... ..+...+|+......... ..+... ............++++++++.+++++..++.+
T Consensus 176 g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~ 254 (333)
T d1ri6a_ 176 GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM-PENFSDTRWAADIHITPDGRHLYACDRTASLI 254 (333)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS-CTTCCSCCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred CCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeee-ecCCCccccceeEEEecccCceeeecccCCeE
Confidence 35678999999999887665 456678887654322111 111000 01123445677889999998777777788999
Q ss_pred EEEECCc---ceEEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCC
Q 002407 726 RVVDGID---LVHKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEA 774 (927)
Q Consensus 726 ~VwD~~~---~~~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s 774 (927)
.+|+... .............+..++|+|||++|++++ .++.|.||+++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 255 TVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp EEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred EEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence 9998422 222222222344567899999999988776 468899997754
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.69 E-value=2.3e-15 Score=160.87 Aligned_cols=208 Identities=8% Similarity=-0.001 Sum_probs=141.2
Q ss_pred CCCCEEEEEecCC-cEE-EEEeCCCcEEEEeCCCCcEEEEEe-c-----CCceEEEEEccCCCCEEEEEE----------
Q 002407 566 HLDDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSSKTCLKIFS-H-----SDYVTCIQFNPVDDRYFISGS---------- 627 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L-~Sgs~DgtV~lWDl~t~~~~~~~~-h-----~~~V~~v~fsp~dg~~L~sgs---------- 627 (927)
+...+..++|+|| .+| ++++.++.|.+||+.+++.+..+. + ...+..++|+| ++++++++.
T Consensus 32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~ 110 (337)
T d1pbyb_ 32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHF 110 (337)
T ss_dssp CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCE
T ss_pred CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcC-CCcEEEEeecCCcceeeec
Confidence 3345677899999 455 566789999999999999988775 2 23456899999 999888776
Q ss_pred --CCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCC------
Q 002407 628 --LDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSH------ 699 (927)
Q Consensus 628 --~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h------ 699 (927)
.+..+.+||..+++.+........+..++|+|+|+++++++. .+.+||..+++.................
T Consensus 111 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (337)
T d1pbyb_ 111 EVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAV 188 (337)
T ss_dssp EECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCC
T ss_pred cccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCccee
Confidence 467899999999999888888888999999999999999864 4788999998877665432111000000
Q ss_pred -----CCC---eEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEE-EeecCCcceEEEEEecCCCEEEEEECCCcEEEE
Q 002407 700 -----QRK---ITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF-KGFRNTNSQISASLTANGRYVVSASEDSYVYVW 770 (927)
Q Consensus 700 -----~~~---Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~-~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IW 770 (927)
... +.......+.. .+.....++.+.+|+........ ....+...+..+.+++++.+++.+ ++.|++|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~ 265 (337)
T d1pbyb_ 189 WNQHESSGVMATPFYTARKDID-PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESF 265 (337)
T ss_dssp CCCCTTTTEEEEEEEEEBTTSC-TTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEE
T ss_pred eccccccceeeeeeeeeeeccc-eeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEE
Confidence 000 00001111111 11122334568888865433222 223345567788999999998876 5889999
Q ss_pred ECCCCCCcc
Q 002407 771 KYEAESRPS 779 (927)
Q Consensus 771 dl~s~~~~~ 779 (927)
|+.+.....
T Consensus 266 d~~~~~~~~ 274 (337)
T d1pbyb_ 266 DLEKNASIK 274 (337)
T ss_dssp ETTTTEEEE
T ss_pred ECCCCcEEE
Confidence 999876543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=5e-15 Score=158.64 Aligned_cols=188 Identities=17% Similarity=0.220 Sum_probs=135.9
Q ss_pred EEEEEeCCCcEEEEeCCCC---cEEEEEecCCceEEEEEccCCCCEEEEEE-CCCcEEEEeCCCCc----EEEeccCCCc
Q 002407 580 HLLSSSMDKTVRLWHLSSK---TCLKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPERQ----VVDWNDLHEM 651 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~---~~~~~~~h~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~t~~----~v~~~~~~~~ 651 (927)
.+++++.|++|++|++... +.++.+.|...+..|+|+| |+++|++++ .|+.|++|++.... ..........
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 84 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence 3578889999999998764 3445667999999999999 999886555 48999999987643 2233444566
Q ss_pred EEEEEECCCCCEEEEEEC-CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 652 VTAACYTPDGQGALVGSY-KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 652 V~sla~spdg~~l~tgs~-Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
+..++|+|||++|++++. ++.|.+|+............ ..+...+.++.|+|++...+.....+..|.+|+.
T Consensus 85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~ 157 (333)
T d1ri6a_ 85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV-------VEGLDGCHSANISPDNRTLWVPALKQDRICLFTV 157 (333)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE-------ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred ceEEEEcCCCCEEeecccCCCceeeeccccccceecccc-------cCCCccceEEEeeecceeeeccccccceeeEEEe
Confidence 788999999999999885 66899999887765544332 2456678889999999855555556778999984
Q ss_pred Ccc---e---EEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCC
Q 002407 731 IDL---V---HKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAE 775 (927)
Q Consensus 731 ~~~---~---~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~ 775 (927)
... . ..............++|++++.+++... ..+...+|++...
T Consensus 158 ~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~ 209 (333)
T d1ri6a_ 158 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP 209 (333)
T ss_dssp CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT
T ss_pred ccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccc
Confidence 321 1 1111222334557899999999887665 4566888887653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.61 E-value=2e-15 Score=161.90 Aligned_cols=298 Identities=8% Similarity=-0.074 Sum_probs=186.0
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccccccccc
Q 002407 462 IKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSL 541 (927)
Q Consensus 462 vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~ 541 (927)
++|+++++||++++.|++|.|||+.+++.+.++.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~---------------------------------------------- 35 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV---------------------------------------------- 35 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEE----------------------------------------------
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEE----------------------------------------------
Confidence 5789999999999999999999998876444321
Q ss_pred ccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEE-EEEeCCCcEEEEeCCCCcEEEEEecC-------CceEE
Q 002407 542 SLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSSKTCLKIFSHS-------DYVTC 612 (927)
Q Consensus 542 ~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L-~Sgs~DgtV~lWDl~t~~~~~~~~h~-------~~V~~ 612 (927)
..|...+.+++|+|| .++ +++..++.|++||+.+++.+..+... ..+..
T Consensus 36 ----------------------~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~ 93 (346)
T d1jmxb_ 36 ----------------------MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYS 93 (346)
T ss_dssp ----------------------CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSC
T ss_pred ----------------------cCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEE
Confidence 023445678999999 454 56668999999999999998877522 24668
Q ss_pred EEEccCCCCEEEEEE------------CCCcEEEEeCCCCcEEE---eccCCCcEEEEEECCCCCEEEEEECCCeEEEEE
Q 002407 613 IQFNPVDDRYFISGS------------LDAKVRIWSIPERQVVD---WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYN 677 (927)
Q Consensus 613 v~fsp~dg~~L~sgs------------~Dg~I~IWDl~t~~~v~---~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwD 677 (927)
++|+| ++++|+++. .+..+.+|+..+++... .......+..+.+++++..++. ++.+.+|+
T Consensus 94 v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 169 (346)
T d1jmxb_ 94 FAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMD 169 (346)
T ss_dssp EEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEEC
T ss_pred EEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEE
Confidence 99999 999887765 46778999988765432 2233455666778888876654 35689999
Q ss_pred CCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCE
Q 002407 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRY 757 (927)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~ 757 (927)
+.+++...... .......+.++|++...++....++.+.+++. ...+.+....
T Consensus 170 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 222 (346)
T d1jmxb_ 170 VKTGKYTVALP----------LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYT-----------------IARFKDDKQD 222 (346)
T ss_dssp TTTCCEEEEEC----------STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEE-----------------EEEC------
T ss_pred ccCCCEEEEEe----------cCCCccceEEeccccEEEEEecCCCceEeeee-----------------eeeeccCcee
Confidence 99888776643 22334455677877654555555666665541 1122334455
Q ss_pred EEEEECCCcEEEEECCCCCCccccc-ccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccC
Q 002407 758 VVSASEDSYVYVWKYEAESRPSRSK-SITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISG 836 (927)
Q Consensus 758 Lasgs~Dg~I~IWdl~s~~~~~~~~-~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~ 836 (927)
++++..+..+.+|++.++....... ..........+.+++..++....+.+.+|..... ........
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~~~~~~~~-- 290 (346)
T d1jmxb_ 223 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQR----------KLIKAANL-- 290 (346)
T ss_dssp -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTT----------EEEEEEEC--
T ss_pred EeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCC----------cEEEEEcC--
Confidence 6677778889999998765332211 0111111122222222222222333344433322 21111110
Q ss_pred CCcccCcceeeecCCCCeEEEeccccccCccccccCchhhc
Q 002407 837 NEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLV 877 (927)
Q Consensus 837 ~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~ 877 (927)
......++|||||++|++++ .++.+.+|+.+.+.
T Consensus 291 ---~~~~~~va~s~DG~~l~v~~----~d~~v~v~D~~t~~ 324 (346)
T d1jmxb_ 291 ---DHTYYCVAFDKKGDKLYLGG----TFNDLAVFNPDTLE 324 (346)
T ss_dssp ---SSCCCEEEECSSSSCEEEES----BSSEEEEEETTTTE
T ss_pred ---CCCEEEEEEcCCCCEEEEEe----CCCcEEEEECccCC
Confidence 01244578999999999987 67889999987653
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.57 E-value=3.1e-12 Score=139.47 Aligned_cols=289 Identities=9% Similarity=-0.002 Sum_probs=175.2
Q ss_pred cCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEecCcCcccceeecc
Q 002407 428 QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG----------EDCVIHVWQVVESERKGELLEK 497 (927)
Q Consensus 428 ~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs----------~DgtVrVWdv~~~~~~~~l~~~ 497 (927)
...++|.+|+..++++.. ++.+|... .++|+|||++|++++ .++.|.|||+.+++....+...
T Consensus 44 ~~~~~v~v~D~~tg~~~~-----~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~ 116 (373)
T d2madh_ 44 SAIIQQWVLDAGSGSILG-----HVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP 116 (373)
T ss_pred CCCceEEEEECCCCCEEE-----EEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecC
Confidence 345678899887776543 34555544 799999999999875 4678999999998876665311
Q ss_pred cccCc--cccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEe
Q 002407 498 QEDGH--LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW 575 (927)
Q Consensus 498 ~~~~~--~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~ 575 (927)
..... ......+.+++++..+.....+. ... ..++.... .....+.....++.+
T Consensus 117 ~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-------~~~--------------~~~~~~~~---~~~~~~~~~~~~~~~ 172 (373)
T d2madh_ 117 DAPRFDVGPYSWMNANTPNNADLLFFQFAA-------GPA--------------VGLVVQGG---SSDDQLLSSPTCYHI 172 (373)
T ss_pred CcceeEeccCCCcEEEEeCCCcEEEEEEcC-------CCc--------------eEEeeccC---CeEEEEeccceeEEE
Confidence 11000 00011233444443332211110 000 01111111 112234455678889
Q ss_pred cCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-------cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec
Q 002407 576 SKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN 646 (927)
Q Consensus 576 spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~-------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~ 646 (927)
+++ ..+++.+.|+++.+|+...+....... .......+.+.+ ++ .++..+.++.+.+|+..........
T Consensus 173 s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~v~~~~~~~~~~~~~~ 250 (373)
T d2madh_ 173 HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK-SG-RIVWPVYSGKILQADISAAGATNKA 250 (373)
T ss_pred ecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC-Cc-eEEEecCCceEEEEEcCCCeEEEEE
Confidence 988 456789999999999999888776653 112234445554 44 4566678899999999887654322
Q ss_pred ---cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC
Q 002407 647 ---DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (927)
Q Consensus 647 ---~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg 723 (927)
........+.+.|.+...+..+.++...++ +...+ ..++....++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------------------------------~~~~~-~~~~~~~~~~ 298 (373)
T d2madh_ 251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL-------------------------------LTSEQ-SAWKLHAAAK 298 (373)
T ss_pred eeccccCcEEeeeeccCcceeeEEecCCCeEEE-------------------------------ecCCC-ceEEeecCCC
Confidence 222344555556655555555444432221 12222 2567778888
Q ss_pred cEEEEECCcceEEEEeecCCcceEEEEEecCCCE--EEEEECCCcEEEEECCCCCCccccc
Q 002407 724 RIRVVDGIDLVHKFKGFRNTNSQISASLTANGRY--VVSASEDSYVYVWKYEAESRPSRSK 782 (927)
Q Consensus 724 ~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~--Lasgs~Dg~I~IWdl~s~~~~~~~~ 782 (927)
.|.+||......... ......+..++|+|||+. +++++.|+.|+|||+.+++......
T Consensus 299 ~v~~~d~~t~~~~~~-~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~ 358 (373)
T d2madh_ 299 EVTSVTGLVGQTSSQ-ISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV 358 (373)
T ss_pred eEEEEECCCCcEEEE-ecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence 999999655443332 234566889999999984 4678899999999999987665443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.54 E-value=3.2e-13 Score=146.08 Aligned_cols=281 Identities=10% Similarity=0.045 Sum_probs=168.8
Q ss_pred cCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEE----------eCCCcEEEEecCcCcccceeecc
Q 002407 428 QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA----------GEDCVIHVWQVVESERKGELLEK 497 (927)
Q Consensus 428 ~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSg----------s~DgtVrVWdv~~~~~~~~l~~~ 497 (927)
.....|.+|+..++++.. ++..+..+ .++|||||++|+.+ ..|+.|+|||+.+++...++...
T Consensus 25 ~~~~~v~v~D~~tg~~~~-----~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~ 97 (355)
T d2bbkh_ 25 AAVTQQFVIDGEAGRVIG-----MIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP 97 (355)
T ss_dssp CSSEEEEEEETTTTEEEE-----EEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET
T ss_pred CCcCeEEEEECCCCcEEE-----EEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecC
Confidence 456789999988776543 34445444 79999999988764 34789999999887755543210
Q ss_pred cccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC
Q 002407 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (927)
Q Consensus 498 ~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp 577 (927)
.. .. .........++|++
T Consensus 98 ~~----------------~~----------------------------------------------~~~~~~~~~~~~s~ 115 (355)
T d2bbkh_ 98 DA----------------PR----------------------------------------------FLVGTYPWMTSLTP 115 (355)
T ss_dssp TC----------------CC----------------------------------------------CCBSCCGGGEEECT
T ss_pred Cc----------------ce----------------------------------------------eecCCCCceEEEec
Confidence 00 00 00111223467889
Q ss_pred C-cEEEEEe--CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-------cc
Q 002407 578 S-QHLLSSS--MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-------ND 647 (927)
Q Consensus 578 d-~~L~Sgs--~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-------~~ 647 (927)
+ ++++.++ .+..+.+|+..+++.+..+........... ....+++.+.|+...++.......+.. ..
T Consensus 116 dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~ 192 (355)
T d2bbkh_ 116 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT---APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE 192 (355)
T ss_dssp TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE---ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeec---CCcceEEEcCCCCEEEEEecCCCeEEEEecccccce
Confidence 8 5555554 567899999999998888764332221111 233344445555555544333221111 11
Q ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccc---ccCCCCCeEEEEEcCCCCcEEEEEECC--
Q 002407 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK---KRSHQRKITGFQFAPGSSSEVLVTSAD-- 722 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~---~~~h~~~Vtsl~fspdg~~~Llsgs~D-- 722 (927)
....+....+.+++..++.++.++.+++|++..+.............. ..........+++++++...++.....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~ 272 (355)
T d2bbkh_ 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE 272 (355)
T ss_dssp TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCc
Confidence 223355567788888999999999999999988765332211100000 001112234578899887444433322
Q ss_pred -------CcEEEEECCcceEEEEeecCCcceEEEEEecCCC--EEEEEECCCcEEEEECCCCCCcccc
Q 002407 723 -------SRIRVVDGIDLVHKFKGFRNTNSQISASLTANGR--YVVSASEDSYVYVWKYEAESRPSRS 781 (927)
Q Consensus 723 -------g~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~--~Lasgs~Dg~I~IWdl~s~~~~~~~ 781 (927)
..|.+||.......... .....+.+++|+|||+ ++++++.|+.|+|||+++++.....
T Consensus 273 ~~~~~~~~~v~v~d~~t~~~~~~~-~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i 339 (355)
T d2bbkh_ 273 WRHKTASRFVVVLDAKTGERLAKF-EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV 339 (355)
T ss_dssp TCTTSCEEEEEEEETTTCCEEEEE-EEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred eeecCCCCeEEEEeCCCCcEEEEe-cCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEE
Confidence 46999996543322221 1234477899999998 4566778999999999998765444
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.53 E-value=2.2e-12 Score=140.72 Aligned_cols=197 Identities=13% Similarity=0.034 Sum_probs=139.5
Q ss_pred ccCCCCEEEEEecCC-cEEEEE-----eCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEEC---------
Q 002407 564 QGHLDDVLDLSWSKS-QHLLSS-----SMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL--------- 628 (927)
Q Consensus 564 ~gH~~~V~~l~~spd-~~L~Sg-----s~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~--------- 628 (927)
..+.+++..++++|+ .+++.. +..+.|.+||..+++.+..+.. .....++|+| |+++|+++..
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~-~~~~~~a~Sp-DG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-GFLPNPVAAH-SGSEFALASTSFSRIAKGK 94 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC-CCCccEEEcC-CCCEEEEEeecCCcccccc
Confidence 458889999999999 555543 2346799999999999988762 2233799999 9999988753
Q ss_pred -CCcEEEEeCCCCcEEEeccCCC--------cEEEEEECCCCCEEEEEEC--CCeEEEEECCCCeeeeeccccccccccc
Q 002407 629 -DAKVRIWSIPERQVVDWNDLHE--------MVTAACYTPDGQGALVGSY--KGSCHLYNTSENKLQQKSPINLQNKKKR 697 (927)
Q Consensus 629 -Dg~I~IWDl~t~~~v~~~~~~~--------~V~sla~spdg~~l~tgs~--Dg~I~IwDl~~~~~~~~~~i~~~~~~~~ 697 (927)
++.|.+||+.+++++.....+. ....+.|+++++.+++... ++.+.+|+....+....
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~----------- 163 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL----------- 163 (373)
T ss_pred cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE-----------
Confidence 5789999999999876554432 2345788899987766543 56788898887665433
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEE--EEee----cCCcceEEEEEecCCCEEEEEECCCcEEEEE
Q 002407 698 SHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHK--FKGF----RNTNSQISASLTANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 698 ~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~--~~~~----~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWd 771 (927)
.....++.|+|++...+++.+.|+.+.+|+....... .... ........+.+++++.+ +..+.++.+++|+
T Consensus 164 --~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 240 (373)
T d2madh_ 164 --LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQAD 240 (373)
T ss_pred --eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEE
Confidence 2346688999999888889999999999995432222 2111 11222334556666644 4556789999999
Q ss_pred CCCCC
Q 002407 772 YEAES 776 (927)
Q Consensus 772 l~s~~ 776 (927)
.....
T Consensus 241 ~~~~~ 245 (373)
T d2madh_ 241 ISAAG 245 (373)
T ss_pred cCCCe
Confidence 88754
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.39 E-value=3.7e-12 Score=137.46 Aligned_cols=194 Identities=6% Similarity=-0.025 Sum_probs=126.7
Q ss_pred EecCC-cEEEEE-----eCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEE----------ECCCcEEEEeC
Q 002407 574 SWSKS-QHLLSS-----SMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISG----------SLDAKVRIWSI 637 (927)
Q Consensus 574 ~~spd-~~L~Sg-----s~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sg----------s~Dg~I~IWDl 637 (927)
+.+|+ .+++.. ..+.+|.+||..+++.+.++. ...+..++|+| ++++|++. ..|+.|++||+
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~-~g~~~~~a~Sp-Dg~~l~v~~~~~~~~~~g~~d~~v~v~D~ 85 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-GGFLPNPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDP 85 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-ECSSCEEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE-CCCCCceEEcC-CCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence 45777 455544 345679999999999988876 22334799999 99888764 34789999999
Q ss_pred CCCcEEEeccCC--------CcEEEEEECCCCCEEEEEE--CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE
Q 002407 638 PERQVVDWNDLH--------EMVTAACYTPDGQGALVGS--YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 638 ~t~~~v~~~~~~--------~~V~sla~spdg~~l~tgs--~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
.+++++...... .....++|+|++++++++. .+..+.+|+..+++....+...... ..........+.
T Consensus 86 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 163 (355)
T d2bbkh_ 86 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY--HIFPTAPDTFFM 163 (355)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE--EEEEEETTEEEE
T ss_pred CCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcc--eEeecCCcceEE
Confidence 999887643221 2345689999999988875 4567999999999887665321100 000112233455
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 708 FAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 708 fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
+++++..+++....++.+.+++..... ......+....+.+++..++.++.++.+++|++..+.
T Consensus 164 ~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 227 (355)
T d2bbkh_ 164 HCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD 227 (355)
T ss_dssp EETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSS
T ss_pred EcCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCc
Confidence 556555333333444445554422211 1122233445778888899999999999999998754
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.22 E-value=5.5e-11 Score=134.75 Aligned_cols=89 Identities=10% Similarity=0.082 Sum_probs=71.0
Q ss_pred ceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEecCcCcccceeeccccc
Q 002407 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE---------DCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 430 ~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~---------DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
++.+.+|+..+++...++..+.|..|...|.++.|||||++||.++. ++.+.|||+.+++... + .
T Consensus 35 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~-l-----~ 108 (470)
T d2bgra1 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-E-----E 108 (470)
T ss_dssp SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-S-----S
T ss_pred CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccc-c-----c
Confidence 45678899888887777777788889999999999999999998853 5678999999876432 2 3
Q ss_pred CccccEEEEccCCCCCeecccccC
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
.+...+..+.|+|||..++.....
T Consensus 109 ~~~~~~~~~~~SPDG~~ia~~~~~ 132 (470)
T d2bgra1 109 RIPNNTQWVTWSPVGHKLAYVWNN 132 (470)
T ss_dssp CCCTTEEEEEECSSTTCEEEEETT
T ss_pred cCCccccccccccCcceeeEeecc
Confidence 445668889999999999986443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.17 E-value=1.3e-10 Score=130.04 Aligned_cols=253 Identities=11% Similarity=0.036 Sum_probs=161.4
Q ss_pred EEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccc
Q 002407 471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550 (927)
Q Consensus 471 LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 550 (927)
++|++.+|.|+||++.+++.+.++. .|+|++...... .+.... + +.
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~Ip--------------Vfspd~~~g~g~-~~es~~-------v----l~-------- 59 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIP--------------VFNVDSATGWGI-TNESKE-------I----LG-------- 59 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEEC--------------SSSBCTTTCTTT-SHHHHH-------H----HC--------
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEE--------------eEcCCCCEEEEE-CCccce-------E----Ee--------
Confidence 6678899999999998887766642 255554432111 100000 0 00
Q ss_pred eEeecCCCceEEEccCCCCEEEEEecCCc-EEE-EEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCC--EEE
Q 002407 551 TVFALSDKPICSFQGHLDDVLDLSWSKSQ-HLL-SSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDR--YFI 624 (927)
Q Consensus 551 ~v~~~s~k~i~~l~gH~~~V~~l~~spd~-~L~-Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~--~L~ 624 (927)
..........|...+......||+ +|+ +...+..|.++|+.++++.+++. +...+..++|+| +++ |++
T Consensus 60 -----~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~ 133 (441)
T d1qnia2 60 -----GDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVF 133 (441)
T ss_dssp -----SSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEE
T ss_pred -----cccccccCcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEE
Confidence 000001122355555666667884 454 44578899999999999888765 678899999999 887 444
Q ss_pred EEECCC-----------------cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCC----------------
Q 002407 625 SGSLDA-----------------KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKG---------------- 671 (927)
Q Consensus 625 sgs~Dg-----------------~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg---------------- 671 (927)
..+.+. .+..+|..+.+..........+..+.|+|+|+++++.+.+.
T Consensus 134 ~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~ 213 (441)
T d1qnia2 134 CNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDW 213 (441)
T ss_dssp EEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCE
T ss_pred eccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEE
Confidence 444332 23557888887776666666788899999999999887542
Q ss_pred -------------------------eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 672 -------------------------SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 672 -------------------------~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
.+.+++.........+ .-......+.++|+|+.+++++..+++|.
T Consensus 214 i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~I----------PvgksPhGv~vSPDGkyl~~~~~~~~tvs 283 (441)
T d1qnia2 214 VVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYI----------PVPKNPHGLNTSPDGKYFIANGKLSPTVS 283 (441)
T ss_dssp EEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEE----------CCBSSCCCEEECTTSCEEEEECTTSSBEE
T ss_pred EEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEE----------eCCCCccCceECCCCCEEEEeCCcCCcEE
Confidence 2222222222222221 12233567899999997777888999999
Q ss_pred EEECCcceEE----------EEee-cCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 727 VVDGIDLVHK----------FKGF-RNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 727 VwD~~~~~~~----------~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
|||..++... +... ...-.....+|+++|..+.+...|..|..|++.
T Consensus 284 v~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 284 VIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp EEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred EEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence 9995432211 1111 111223456899999888899999999999985
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.17 E-value=1.3e-10 Score=127.23 Aligned_cols=277 Identities=10% Similarity=-0.044 Sum_probs=167.5
Q ss_pred CceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEecCcCcccceeeccc
Q 002407 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG----------EDCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 429 ~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs----------~DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
....|.+++..++++... +.+|... .++|+|||++|++++ .|++|++||..+++....+...
T Consensus 44 g~~~~~~~d~~~~~~~~~-----~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p- 115 (368)
T d1mdah_ 44 GTTENWVSCAGCGVTLGH-----SLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP- 115 (368)
T ss_dssp SSEEEEEEETTTTEEEEE-----EEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET-
T ss_pred CcceEEEEeCCCCcEEEE-----EeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCC-
Confidence 345677788777765443 3555554 589999999888764 3778999999887765553210
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd 578 (927)
...... .......++|+||
T Consensus 116 ---------------~~~~~~----------------------------------------------~g~~p~~~a~SpD 134 (368)
T d1mdah_ 116 ---------------DAPRFS----------------------------------------------VGPRVHIIGNCAS 134 (368)
T ss_dssp ---------------TSCSCC----------------------------------------------BSCCTTSEEECTT
T ss_pred ---------------ccceec----------------------------------------------ccCCccceEECCC
Confidence 000000 0011124789999
Q ss_pred -cEEEEEe-CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-------ccCC
Q 002407 579 -QHLLSSS-MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-------NDLH 649 (927)
Q Consensus 579 -~~L~Sgs-~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-------~~~~ 649 (927)
++|+++. .++.|.+||+.+++.+..+....... +.|.....++..+.||.+.+|++........ ....
T Consensus 135 Gk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (368)
T d1mdah_ 135 SACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH---IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN 211 (368)
T ss_dssp SSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC---CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce---EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccc
Confidence 5566665 57999999999999988876322221 1222456777888899999998866543221 1122
Q ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccc---ccCCCCCeEEEEEcCCCCcEEEEEECC----
Q 002407 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK---KRSHQRKITGFQFAPGSSSEVLVTSAD---- 722 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~---~~~h~~~Vtsl~fspdg~~~Llsgs~D---- 722 (927)
..+..+.+.+++..+... .+.++++++..+.............. ..........+++++++..++++...+
T Consensus 212 ~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~ 289 (368)
T d1mdah_ 212 CSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289 (368)
T ss_dssp BCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCT
T ss_pred cceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCcee
Confidence 344567778887655543 56677777766554433221111000 000112233577888887544444332
Q ss_pred ----CcEEEEECCcceEEEEeecCCcceEEEEEecCCC-E-EEEEECCCcEEEEECCCCCCccc
Q 002407 723 ----SRIRVVDGIDLVHKFKGFRNTNSQISASLTANGR-Y-VVSASEDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 723 ----g~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~-~-Lasgs~Dg~I~IWdl~s~~~~~~ 780 (927)
..|.+||.......... .....+..++|+|||+ + ++++..|+.|+|||..+++....
T Consensus 290 ~~~~~~v~v~D~~t~~~~~~~-~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~ 352 (368)
T d1mdah_ 290 LAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352 (368)
T ss_dssp TSCEEEEEEEESSSCCEEECC-EEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred ecCCceEEEEECCCCcEeEEe-cCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence 35889996544332221 1234577899999997 3 45667789999999998775443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.17 E-value=3.3e-10 Score=128.22 Aligned_cols=230 Identities=10% Similarity=0.038 Sum_probs=140.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccc
Q 002407 461 SIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKS 540 (927)
Q Consensus 461 ~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~ 540 (927)
.+.|.+++.++.. .|+.|.+||+.+++....+.......+...+..+.|+||+..|+.......+...
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~---------- 88 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRH---------- 88 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSS----------
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeee----------
Confidence 4779999988764 5789999999999876544334445556678899999999988876432211000
Q ss_pred cccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe---------------
Q 002407 541 LSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--------------- 605 (927)
Q Consensus 541 ~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~--------------- 605 (927)
.......++++..+.+..+..|...+..+.|+||+..++-..++.+++|+..+++..+...
T Consensus 89 ----s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~ 164 (470)
T d2bgra1 89 ----SYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWV 164 (470)
T ss_dssp ----CEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHH
T ss_pred ----ccCceEEEEECCCCcccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCccccccccee
Confidence 0001125677888888888999999999999999543334567899999999888766542
Q ss_pred ----cCCceEEEEEccCCCCEEEEEECCCc-EEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Q 002407 606 ----HSDYVTCIQFNPVDDRYFISGSLDAK-VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 606 ----h~~~V~~v~fsp~dg~~L~sgs~Dg~-I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~ 680 (927)
.......+.|+| |+++|+....|.. +..|.+..... ..........+.+...+. ...+..+.+|++..
T Consensus 165 ~~~~~~~~~~~~~wSP-DGk~ia~~~~d~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~g~----~~~~~~~~v~~~~~ 237 (470)
T d2bgra1 165 YEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSD--ESLQYPKTVRVPYPKAGA----VNPTVKFFVVNTDS 237 (470)
T ss_dssp HHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCS--TTCSSCEEEEEECCBTTS----CCCEEEEEEEEGGG
T ss_pred eeeeecCCccccEECC-CCCccceeEecCCcCceEEEEeecc--CCCCCCeeeeeccccccc----cCCcceEEEEECCC
Confidence 112345688999 9999999876644 55444311000 000111222222222221 11234678899877
Q ss_pred Ceeeeecccccc--cccccCCCCCeEEEEEcCCCC
Q 002407 681 NKLQQKSPINLQ--NKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 681 ~~~~~~~~i~~~--~~~~~~h~~~Vtsl~fspdg~ 713 (927)
+........... ..........+..+.|.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 272 (470)
T d2bgra1 238 LSSVTNATSIQITAPASMLIGDHYLCDVTWATQER 272 (470)
T ss_dssp CCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE
T ss_pred cceeeeccccccCCccccCCCCceEEEEEEcCCCc
Confidence 654332211000 000123344577888998875
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.01 E-value=1.6e-09 Score=118.31 Aligned_cols=234 Identities=7% Similarity=-0.124 Sum_probs=140.0
Q ss_pred ccCceEEEEeccCcccccceeeeeE--eecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCcCcccceeecccc--cC
Q 002407 427 GQERVRVRQYGKSCKDLTALYKCQE--IQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKGELLEKQE--DG 501 (927)
Q Consensus 427 g~~~~~V~i~~~~s~~l~~l~~~q~--L~gH~~~I~~vafSpdG~~LaSgs-~DgtVrVWdv~~~~~~~~l~~~~~--~~ 501 (927)
|..+..|++|+..+.+......... ..........++|+|||++|+.+. .++.|.+||+.+++....+..... ..
T Consensus 92 g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 171 (368)
T d1mdah_ 92 GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH 171 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE
T ss_pred cccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEc
Confidence 4567889999988765543322100 000112234689999999998876 579999999999877665431111 01
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL 581 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L 581 (927)
+......+.+++++.++.....+........ ....+..+...+....+.+++.+
T Consensus 172 ~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~g~~ 225 (368)
T d1mdah_ 172 PGAAATHYLGSCPASLAASDLAAAPAAAGIV--------------------------GAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp EEETTEEECCCCTTSCEEEECCSSCCCCEEC--------------------------CCCSCTTSCBCSCCEEETTTTEE
T ss_pred cCCCceEEEEcCCCCEEEEEecCCceeeeee--------------------------ecccccccccceeecccccCcEE
Confidence 1122234566666665544322221100000 00011223334445566666544
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEe-------------cCCceEEEEEccCCCCEEEEEECC---------CcEEEEeCCC
Q 002407 582 LSSSMDKTVRLWHLSSKTCLKIFS-------------HSDYVTCIQFNPVDDRYFISGSLD---------AKVRIWSIPE 639 (927)
Q Consensus 582 ~Sgs~DgtV~lWDl~t~~~~~~~~-------------h~~~V~~v~fsp~dg~~L~sgs~D---------g~I~IWDl~t 639 (927)
+.. ..+.++++++..+....... .......++++| ++..++....+ ..|.+||..+
T Consensus 226 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t 303 (368)
T d1mdah_ 226 VWA-VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAENTSSVTASV 303 (368)
T ss_dssp EEC-BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred EEe-cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC-CCCEEEEEecCCCceeecCCceEEEEECCC
Confidence 332 34556666666554433221 112234578888 66665554322 2489999999
Q ss_pred CcEEEeccCCCcEEEEEECCCCCE--EEEEECCCeEEEEECCCCeeeeecc
Q 002407 640 RQVVDWNDLHEMVTAACYTPDGQG--ALVGSYKGSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 640 ~~~v~~~~~~~~V~sla~spdg~~--l~tgs~Dg~I~IwDl~~~~~~~~~~ 688 (927)
++.+........+..++|+|||+. ++++..++.|++||..+++.+..+.
T Consensus 304 ~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 304 GQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp CCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred CcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence 999888777788999999999973 4566678999999999999887764
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.90 E-value=5.1e-07 Score=98.58 Aligned_cols=168 Identities=11% Similarity=0.092 Sum_probs=104.1
Q ss_pred CCceEEEEEccCCCCEEEEEEC-CCcEEEEeCCC-CcEE-----EeccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEEC
Q 002407 607 SDYVTCIQFNPVDDRYFISGSL-DAKVRIWSIPE-RQVV-----DWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNT 678 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~-Dg~I~IWDl~t-~~~v-----~~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl 678 (927)
...+.++.|+| ++++|+++.. ...|.+|++.. +.+. ...........++|+|+++++.+.. .++.|.+|++
T Consensus 144 ~~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~ 222 (365)
T d1jofa_ 144 NTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp TCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence 34578999999 9998888765 34688887654 3322 1223346789999999999886665 5788999998
Q ss_pred CCCeeeeeccc---ccc-------cccccCCCCCeEEEEEcCCCCcEEEEEECCC-----cEEEEECCc---ceEEE---
Q 002407 679 SENKLQQKSPI---NLQ-------NKKKRSHQRKITGFQFAPGSSSEVLVTSADS-----RIRVVDGID---LVHKF--- 737 (927)
Q Consensus 679 ~~~~~~~~~~i---~~~-------~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg-----~I~VwD~~~---~~~~~--- 737 (927)
........... .+. .............+.++|+++.++++...+. .|..|+... .....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~ 302 (365)
T d1jofa_ 223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS 302 (365)
T ss_dssp CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEee
Confidence 76643322111 000 0001122334667899999985444443333 377776332 11111
Q ss_pred EeecCCcceEEEEEec-CCCEEEEEE-CCCcEEEEECCCC
Q 002407 738 KGFRNTNSQISASLTA-NGRYVVSAS-EDSYVYVWKYEAE 775 (927)
Q Consensus 738 ~~~~~~~~v~sv~fsp-dg~~Lasgs-~Dg~I~IWdl~s~ 775 (927)
...........++|+| +|++|+++. .++.|.||+++..
T Consensus 303 ~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 303 PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 1112233456789998 899887775 6788999998653
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.88 E-value=5.4e-09 Score=116.71 Aligned_cols=268 Identities=12% Similarity=0.086 Sum_probs=156.7
Q ss_pred EEEEECCCcEEEEeCCCCcEEEeccC-------------------------------CCcEEEEEECCCCCEEEEEE-CC
Q 002407 623 FISGSLDAKVRIWSIPERQVVDWNDL-------------------------------HEMVTAACYTPDGQGALVGS-YK 670 (927)
Q Consensus 623 L~sgs~Dg~I~IWDl~t~~~v~~~~~-------------------------------~~~V~sla~spdg~~l~tgs-~D 670 (927)
|++++.+|.|++|++.+++.+..+.. +-.+....++|||++|++.. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 67788899999999999887654321 12233444578999987765 57
Q ss_pred CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcE------------------EEEECCc
Q 002407 671 GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI------------------RVVDGID 732 (927)
Q Consensus 671 g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I------------------~VwD~~~ 732 (927)
++|.++|+.+++......+ .+...+..++|+|+++..++++..+..+ ..+|..+
T Consensus 94 ~rVavIDl~t~k~~~ii~i--------P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t 165 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHI--------PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET 165 (441)
T ss_dssp TEEEEEETTTTEEEEEEEC--------TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT
T ss_pred CEEEEEECCCCcEeeEEec--------CCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc
Confidence 7899999999988776542 4567899999999988655555444433 3466554
Q ss_pred ceEEEEeecCCcceEEEEEecCCCEEEEEECCCc-EEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEE
Q 002407 733 LVHKFKGFRNTNSQISASLTANGRYVVSASEDSY-VYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTW 811 (927)
Q Consensus 733 ~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~-I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~ 811 (927)
.....+... ......+.|+|+|+++++++.+.. +..++..+........ .......+.+..++..+.+..++...++
T Consensus 166 ~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~-v~n~p~~~~~~~dGk~~~v~~~~v~vvd 243 (441)
T d1qnia2 166 MDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVV-VFNVERIAAAVKAGNFKTIGDSKVPVVD 243 (441)
T ss_dssp CSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEE-EEEHHHHHHHHHTTCCBCCTTCCCCEEE
T ss_pred ceeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEE-eCCccceEEEecCCCEEEeCCCCcEEEE
Confidence 433333322 234567899999999998886643 3333333322221110 0000111112222222222223333333
Q ss_pred eecCCc-eeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccc-cccCCCceec
Q 002407 812 GLQDTY-LDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLT-ARNRSPRTSL 889 (927)
Q Consensus 812 ~~~d~~-i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~-~~~~s~v~s~ 889 (927)
...... +..+... -.--.+.+||||++++.++ ..+.++.+|+.+++... ..+..+...+
T Consensus 244 ~~~~~~v~~~IPvg----------------ksPhGv~vSPDGkyl~~~~---~~~~tvsv~d~~k~~~~~~~~~~~~~~~ 304 (441)
T d1qnia2 244 GRGESEFTRYIPVP----------------KNPHGLNTSPDGKYFIANG---KLSPTVSVIAIDKLDDLFEDKIELRDTI 304 (441)
T ss_dssp CSSSCSSEEEECCB----------------SSCCCEEECTTSCEEEEEC---TTSSBEEEEEGGGHHHHTTTSSCGGGGE
T ss_pred cccCCceEEEEeCC----------------CCccCceECCCCCEEEEeC---CcCCcEEEEEeehhhhHhhccCCcceEE
Confidence 322211 1111110 0112345899999998876 57789999998876532 1222221111
Q ss_pred c----cCCCC-CcccCCCCCEEEEEcCCCcEEEee
Q 002407 890 D----ISNGI-SSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 890 ~----~~~~~-~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
. ...+. -.+|.++|..+.|...|..|..|.
T Consensus 305 ~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~ 339 (441)
T d1qnia2 305 VAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWN 339 (441)
T ss_dssp EECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred EeecccccCcccceecCCceEEEcccccceEEEec
Confidence 0 00000 247999999999999999999998
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.77 E-value=4.6e-06 Score=87.01 Aligned_cols=178 Identities=10% Similarity=0.137 Sum_probs=125.3
Q ss_pred CCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec---cCCCcEEEEEECCC
Q 002407 586 MDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN---DLHEMVTAACYTPD 660 (927)
Q Consensus 586 ~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~---~~~~~V~sla~spd 660 (927)
.++.|.+++. .+.....+. .......+++.+ ++.++++....+.+.+++.. ++++... ........+++.++
T Consensus 91 ~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~ 167 (279)
T d1q7fa_ 91 PTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK 167 (279)
T ss_dssp GGCEEEEECT-TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS
T ss_pred Cccccccccc-cccceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeeccc
Confidence 3456666765 355555554 456678899998 88888887777788888854 4444432 33467889999999
Q ss_pred CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEEC-CcceEEEE
Q 002407 661 GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS-ADSRIRVVDG-IDLVHKFK 738 (927)
Q Consensus 661 g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs-~Dg~I~VwD~-~~~~~~~~ 738 (927)
+..+++....+.|++||.... .+..+.. .+......+|++.+++. ++++-. .+..|.+|+. .+.+..+.
T Consensus 168 g~i~v~d~~~~~V~~~d~~G~-~~~~~g~-------~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~~G~~~~~~~ 238 (279)
T d1q7fa_ 168 QEIFISDNRAHCVKVFNYEGQ-YLRQIGG-------EGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQLISALE 238 (279)
T ss_dssp SEEEEEEGGGTEEEEEETTCC-EEEEESC-------TTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSCEEEEEE
T ss_pred eeEEeeeccccceeeeecCCc-eeeeecc-------cccccCCcccccccCCe-EEEEECCCCcEEEEECCCCCEEEEEe
Confidence 998888888899999998654 3333211 23455688999999986 555544 3557999984 34455555
Q ss_pred eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 739 GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 739 ~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
..........+++.++|.+++ +..+..|++|++....
T Consensus 239 ~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 239 SKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA 275 (279)
T ss_dssp ESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred CCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence 544445678899999997655 5578999999998754
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=6.5e-06 Score=84.13 Aligned_cols=220 Identities=11% Similarity=0.077 Sum_probs=134.7
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDC---VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~Dg---tVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
..+...+...+|||||++||-..... .+.+.+...+..... ...........++|++..++..........
T Consensus 35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~spdg~~i~~~~~~~~~~~ 108 (269)
T d2hqsa1 35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV------ASFPRHNGAPAFSPDGSKLAFALSKTGSLN 108 (269)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE------ECCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEE------eeeecccccceecCCCCeeeEeeecCCccc
Confidence 34677788999999999999765433 355555554432221 233345567789999887765432211000
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCC--cEEEEeCCCCcEEEEEe
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDK--TVRLWHLSSKTCLKIFS 605 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~Dg--tV~lWDl~t~~~~~~~~ 605 (927)
...+............+........++++ ..+++...++ .|.+.++..+.......
T Consensus 109 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~ 168 (269)
T d2hqsa1 109 --------------------LYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW 168 (269)
T ss_dssp --------------------EEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC
T ss_pred --------------------eeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeec
Confidence 01111122222333334444555566665 3455555555 46666777776655555
Q ss_pred cCCceEEEEEccCCCCEEEEEECCC-c--EEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECC---CeEEEEECC
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDA-K--VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYK---GSCHLYNTS 679 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg-~--I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~D---g~I~IwDl~ 679 (927)
.........|+| +++.++..+.++ . |.+.+...+.. .............|+|||+.|+..+.. ..|+++++.
T Consensus 169 ~~~~~~~~~~sp-dg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d 246 (269)
T d2hqsa1 169 EGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 246 (269)
T ss_dssp SSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred cccccccccccc-ccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 777788889999 888877765544 3 44556555554 444555666788999999998766543 468999998
Q ss_pred CCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 680 ENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 680 ~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
.+..... ......+...+|+|
T Consensus 247 g~~~~~l----------t~~~g~~~~p~WSP 267 (269)
T d2hqsa1 247 GRFKARL----------PATDGQVKFPAWSP 267 (269)
T ss_dssp SCCEEEC----------CCSSSEEEEEEECC
T ss_pred CCCEEEE----------eCCCCcEEeEEeCC
Confidence 7765432 23455677888998
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.70 E-value=1.2e-06 Score=95.66 Aligned_cols=195 Identities=8% Similarity=0.105 Sum_probs=112.3
Q ss_pred EEEEEeC--CCcEEEE--eCCCCcEE--EEE--ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEEe--ccC
Q 002407 580 HLLSSSM--DKTVRLW--HLSSKTCL--KIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDW--NDL 648 (927)
Q Consensus 580 ~L~Sgs~--DgtV~lW--Dl~t~~~~--~~~--~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~~--~~~ 648 (927)
.|+.|+. .+.|.++ |.++++.. ... .....+..|+|+| ++++|++... +.+..|.+.. +..... ...
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~-d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~ 81 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDH-ERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECT-TSSEEEEEEB-TEEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcC-CCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecC
Confidence 4666654 4556554 44555432 222 2455677899999 9998888764 5677777653 233322 222
Q ss_pred CCcEEEEEECCCCCEEEEEE---CCCeEEEEECCCC-eeeeeccccc-------ccccccCCCCCeEEEEEcCCCCcEEE
Q 002407 649 HEMVTAACYTPDGQGALVGS---YKGSCHLYNTSEN-KLQQKSPINL-------QNKKKRSHQRKITGFQFAPGSSSEVL 717 (927)
Q Consensus 649 ~~~V~sla~spdg~~l~tgs---~Dg~I~IwDl~~~-~~~~~~~i~~-------~~~~~~~h~~~Vtsl~fspdg~~~Ll 717 (927)
......++++++++.+.+.. ..+.|..+.+... .....+.+.. ...........+.++.|+|+++.+++
T Consensus 82 ~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v 161 (365)
T d1jofa_ 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEE
Confidence 34456778888888543332 2355655544321 1111110000 00001123345789999999985555
Q ss_pred EEECCCcEEEEECC---cc--eEEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCCC
Q 002407 718 VTSADSRIRVVDGI---DL--VHKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAES 776 (927)
Q Consensus 718 sgs~Dg~I~VwD~~---~~--~~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~~ 776 (927)
+......|.+|+.. .. ...............++|+|+++++++.. .++.|.+|++....
T Consensus 162 ~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~ 226 (365)
T d1jofa_ 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred eeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence 55556788888732 11 22222233345678899999999987666 57889999997644
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.68 E-value=9.3e-06 Score=82.94 Aligned_cols=213 Identities=15% Similarity=0.124 Sum_probs=142.5
Q ss_pred eEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCC---cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEE
Q 002407 551 TVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK---TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISG 626 (927)
Q Consensus 551 ~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~Dg---tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sg 626 (927)
.+.+..+.....+..+...+...+|||| ++|+...... .+.+.+...+.......+........|+| ++..|+..
T Consensus 22 ~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~i~~~ 100 (269)
T d2hqsa1 22 RVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFA 100 (269)
T ss_dssp EEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT-TSSEEEEE
T ss_pred EEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecC-CCCeeeEe
Confidence 3445667667777777888999999999 6676654433 47777888888777777888999999999 88887766
Q ss_pred ECC-Cc--EEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEE-CCC--eEEEEECCCCeeeeecccccccccccCCC
Q 002407 627 SLD-AK--VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGS-YKG--SCHLYNTSENKLQQKSPINLQNKKKRSHQ 700 (927)
Q Consensus 627 s~D-g~--I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs-~Dg--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~ 700 (927)
... +. +..+.....................+++++..++..+ .++ .|.++++..+..... ....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~----------~~~~ 170 (269)
T d2hqsa1 101 LSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI----------TWEG 170 (269)
T ss_dssp ECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC----------CCSS
T ss_pred eecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceee----------eccc
Confidence 543 22 4444445555555566666667778888887666554 344 466666666543322 2445
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCcEEEE--ECCcceEEEEeecCCcceEEEEEecCCCEEEEEEC---CCcEEEEECCCC
Q 002407 701 RKITGFQFAPGSSSEVLVTSADSRIRVV--DGIDLVHKFKGFRNTNSQISASLTANGRYVVSASE---DSYVYVWKYEAE 775 (927)
Q Consensus 701 ~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw--D~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~---Dg~I~IWdl~s~ 775 (927)
.......|+|++..++......+...+| +......... ..........|+|||++|+..+. ...|++|++...
T Consensus 171 ~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 171 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL--SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 248 (269)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC--CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred ccccccccccccceeEEEeecCCceeeeEeecccccceEe--ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 5677788999998655555556655555 4433333222 23445677899999999886654 346889999765
Q ss_pred C
Q 002407 776 S 776 (927)
Q Consensus 776 ~ 776 (927)
.
T Consensus 249 ~ 249 (269)
T d2hqsa1 249 F 249 (269)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.67 E-value=3.1e-06 Score=89.34 Aligned_cols=226 Identities=9% Similarity=0.031 Sum_probs=149.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccccc
Q 002407 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (927)
Q Consensus 458 ~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~ 537 (927)
.+..|+++|||+++++...+++|..|+..... .
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~--~--------------------------------------------- 61 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--Q--------------------------------------------- 61 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCE--E---------------------------------------------
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE--E---------------------------------------------
Confidence 58899999999999999889988777643210 0
Q ss_pred ccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC--cEEEEEe--cCCceEE
Q 002407 538 RKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK--TCLKIFS--HSDYVTC 612 (927)
Q Consensus 538 ~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~--~~~~~~~--h~~~V~~ 612 (927)
.+......+.+++|.++ .++++...++.+.+|+.... ....... .......
T Consensus 62 ------------------------~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 117 (302)
T d2p4oa1 62 ------------------------IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNG 117 (302)
T ss_dssp ------------------------EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEE
T ss_pred ------------------------EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccce
Confidence 11123345788999999 55666667788887776533 2322222 5567889
Q ss_pred EEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC-----------CCcEEEEEECCCCCEEEEEECCCeEEEEECCCC
Q 002407 613 IQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-----------HEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 613 v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~-----------~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~ 681 (927)
+++.+ +++++++-+.++.+..++...+....+... ......+.+.. +..+++.+..+.|..+++...
T Consensus 118 i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~ 195 (302)
T d2p4oa1 118 ITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDST 195 (302)
T ss_dssp EEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTT
T ss_pred eEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEecccccc
Confidence 99999 899888888889999999887754322111 12455666643 335555667788888888765
Q ss_pred eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEE-EeecCCcceEEEEE---ecCCCE
Q 002407 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF-KGFRNTNSQISASL---TANGRY 757 (927)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~-~~~~~~~~v~sv~f---spdg~~ 757 (927)
........ .........++|.++|. ++++...++.|..++.......+ .........++++| .+|++.
T Consensus 196 ~~~~~~~~-------~~~~~~pdgia~d~dG~-l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~ 267 (302)
T d2p4oa1 196 DKPGEPEI-------FVEQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTA 267 (302)
T ss_dssp SCBCCCEE-------EEESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTE
T ss_pred cccccccc-------ccCCCCCcceEECCCCC-EEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCE
Confidence 43322211 11233456799999986 67777788999999865444333 33334455789999 678888
Q ss_pred EEEEECC
Q 002407 758 VVSASED 764 (927)
Q Consensus 758 Lasgs~D 764 (927)
|+.++..
T Consensus 268 Lyvtt~~ 274 (302)
T d2p4oa1 268 IYVVTNG 274 (302)
T ss_dssp EEEEECT
T ss_pred EEEECCC
Confidence 8766544
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.66 E-value=1.8e-06 Score=89.26 Aligned_cols=190 Identities=7% Similarity=0.044 Sum_probs=126.3
Q ss_pred EEEEecCCcEEEEEeC-CCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccC
Q 002407 571 LDLSWSKSQHLLSSSM-DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDL 648 (927)
Q Consensus 571 ~~l~~spd~~L~Sgs~-DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~ 648 (927)
..|++.+++.|+.+.. .+.|++++-.....+..+.......+|++.+ +++++++-.....+..++......... ...
T Consensus 60 ~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 138 (260)
T d1rwia_ 60 QGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTG 138 (260)
T ss_dssp CCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCCS
T ss_pred eEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccc-cceeEeeccccccccccccccceeeeeeecc
Confidence 4567777755544444 4455555555555443333446678999999 888887766667788887766543332 222
Q ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 649 ~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
......+++.++++.+++...++.|..++.......... .........+++.+++. ++++....+.|..+
T Consensus 139 ~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~---------~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~ 208 (260)
T d1rwia_ 139 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP---------FTDITAPWGIAVDEAGT-VYVTEHNTNQVVKL 208 (260)
T ss_dssp CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC---------CSSCCSEEEEEECTTCC-EEEEETTTTEEEEE
T ss_pred cCCcceeeecCCCCEeeeccccccccccccccceeeeee---------ccccCCCccceeeeeee-eeeeecCCCEEEEE
Confidence 345678999999998888888889999998765443221 13445678999999875 66666677889888
Q ss_pred ECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEE
Q 002407 729 DGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 729 D~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWd 771 (927)
+...................++++++|.++++-..++.|+.++
T Consensus 209 ~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 209 LAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp CTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred eCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence 8544333333333334567899999998877766666555443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.50 E-value=2.6e-05 Score=82.85 Aligned_cols=200 Identities=8% Similarity=0.085 Sum_probs=124.8
Q ss_pred EEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC----CceEEEEEccCCCCEEEEEEC---------------
Q 002407 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS----DYVTCIQFNPVDDRYFISGSL--------------- 628 (927)
Q Consensus 570 V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~----~~V~~v~fsp~dg~~L~sgs~--------------- 628 (927)
-..|.|.++ +.|+++.....|..++........... .. ...+.++|.+ ++++.++-..
T Consensus 73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~ 151 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEK 151 (314)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccC
Confidence 467889888 578888777788888887654332221 11 1357899999 8887776422
Q ss_pred CCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCC-----EEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCe
Q 002407 629 DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQ-----GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 629 Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~-----~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
.|.|..++. .++.......-...+.++|+|++. ++++-+..+.|..|++.....+....+.... ........
T Consensus 152 ~G~v~~~~~-dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~--~~~~~~~p 228 (314)
T d1pjxa_ 152 FGSIYCFTT-DGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI--PGTHEGGA 228 (314)
T ss_dssp CEEEEEECT-TSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC--CCCSSCEE
T ss_pred CceEEEEee-cCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEc--cccccccc
Confidence 233444443 344444333334567889998775 4444566788999987643322211110000 01222346
Q ss_pred EEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecCCcceEEEEEecCCCE-EEEEECCCcEEEEECCCCC
Q 002407 704 TGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANGRY-VVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~-Lasgs~Dg~I~IWdl~s~~ 776 (927)
..+++..+|. ++++....+.|.+||... ....+.. ......+++|.++++. +++.+.+|.|+..++....
T Consensus 229 dGiavD~~Gn-lyVa~~~~g~I~~~dp~~g~~~~~i~~--p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 229 DGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEEEEBTTCC-EEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred eeeEEecCCc-EEEEEcCCCEEEEEeCCCCEEEEEEEC--CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence 7899999986 667777889999999542 3333333 3356788999999974 5666677888888876543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.48 E-value=6.2e-05 Score=79.89 Aligned_cols=191 Identities=8% Similarity=0.009 Sum_probs=116.0
Q ss_pred CEEEEEecCCcEEEEEeC-----CCcEEEEeCCCCcEEEEEec---CCceEEEEEccCCCCEEEEEEC------CCcEEE
Q 002407 569 DVLDLSWSKSQHLLSSSM-----DKTVRLWHLSSKTCLKIFSH---SDYVTCIQFNPVDDRYFISGSL------DAKVRI 634 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~-----DgtV~lWDl~t~~~~~~~~h---~~~V~~v~fsp~dg~~L~sgs~------Dg~I~I 634 (927)
....|++.+++.|+.+.. .+.|...+...........+ ...+..+++.+ ++++.++-.. .+.+..
T Consensus 83 ~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~ 161 (319)
T d2dg1a1 83 NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYY 161 (319)
T ss_dssp SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEE
T ss_pred CeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEE
Confidence 456788888866555542 23455556666655554442 33578899999 8887665432 123555
Q ss_pred EeCCCCcEEEeccCCCcEEEEEECCCCCEEEEE-ECCCeEEEEECCCCee-eeecccccccccccCCCCCeEEEEEcCCC
Q 002407 635 WSIPERQVVDWNDLHEMVTAACYTPDGQGALVG-SYKGSCHLYNTSENKL-QQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 635 WDl~t~~~v~~~~~~~~V~sla~spdg~~l~tg-s~Dg~I~IwDl~~~~~-~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
++...+.+......-...+.++|+|+++.|.++ +..+.|+.|++..... ........ ............|++.++|
T Consensus 162 ~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~--~~~~~~~~~PdGl~vD~~G 239 (319)
T d2dg1a1 162 VSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI--PYYFTGHEGPDSCCIDSDD 239 (319)
T ss_dssp ECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE--EEECCSSSEEEEEEEBTTC
T ss_pred EecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceecccccee--eeccCCccceeeeeEcCCC
Confidence 665554444433333467889999999876554 5678999999864321 11110000 0001222336789999998
Q ss_pred CcEEEEEECCCcEEEEECC-cceEEEEeec----CCcceEEEEEecCCCEEEEEEC
Q 002407 713 SSEVLVTSADSRIRVVDGI-DLVHKFKGFR----NTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 713 ~~~Llsgs~Dg~I~VwD~~-~~~~~~~~~~----~~~~v~sv~fspdg~~Lasgs~ 763 (927)
. ++++....+.|.+||.. +.+..+.... ....+.+++|.+++..+++...
T Consensus 240 ~-l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 240 N-LYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp C-EEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred C-EEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 6 77777889999999953 3444444321 1234678999998877766543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.47 E-value=1.1e-05 Score=82.92 Aligned_cols=196 Identities=8% Similarity=-0.012 Sum_probs=129.6
Q ss_pred CEEEEEecCCcEEEE-E-eCCCcEEEEeCCCCcEEEEE-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe
Q 002407 569 DVLDLSWSKSQHLLS-S-SMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645 (927)
Q Consensus 569 ~V~~l~~spd~~L~S-g-s~DgtV~lWDl~t~~~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~ 645 (927)
.-..|++.+++.+.. . +..+.|..++.......... .-......|++.+ +++++++....+.+++++-.+...+..
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~~ 93 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVLP 93 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccceeeee
Confidence 357899998855433 3 34566777766544332221 2234567899999 888877776666677766555555544
Q ss_pred ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcE
Q 002407 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI 725 (927)
Q Consensus 646 ~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I 725 (927)
......+..+++.++++++++-.....+..++.......... ........++++.+++. ++++...++.|
T Consensus 94 ~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~---------~~~~~~p~~i~~~~~g~-~~v~~~~~~~i 163 (260)
T d1rwia_ 94 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP---------FTGLNDPDGVAVDNSGN-VYVTDTDNNRV 163 (260)
T ss_dssp CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECC---------CCSCCSCCEEEECTTCC-EEEEEGGGTEE
T ss_pred eeeeeecccccccccceeEeeccccccccccccccceeeeee---------ecccCCcceeeecCCCC-Eeeeccccccc
Confidence 444467899999999998887766777888877654332211 12234457899999876 67777888899
Q ss_pred EEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 726 RVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 726 ~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
..+|...................++++++|+++++....+.|+.++....
T Consensus 164 ~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~ 213 (260)
T d1rwia_ 164 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 213 (260)
T ss_dssp EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred cccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence 99996544333333334455688999999998888888888888876543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.40 E-value=1.5e-05 Score=83.87 Aligned_cols=199 Identities=9% Similarity=-0.031 Sum_probs=136.9
Q ss_pred CEEEEEecCCc-EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC--CcEEE-
Q 002407 569 DVLDLSWSKSQ-HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE--RQVVD- 644 (927)
Q Consensus 569 ~V~~l~~spd~-~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t--~~~v~- 644 (927)
.+..+++.|++ ++++...+++|+.|+.. ++..........+.+++|.| +++++++...++.+.+|+... +....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccceeec
Confidence 58899999994 55666678989999866 44444555778899999999 999999988888888887644 33322
Q ss_pred -eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccc-cccccccCCCCCeEEEEEcCCCCcEEEEEECC
Q 002407 645 -WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN-LQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (927)
Q Consensus 645 -~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~-~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D 722 (927)
..........+++.+++.++++-+.++.+..++...+.......-. ...............+.+.. ..++++.+..
T Consensus 107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~ 184 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEK 184 (302)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTT
T ss_pred cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecCCC
Confidence 2333457899999999999888888999999999887644322111 00111122334456676654 4467777888
Q ss_pred CcEEEEECCc-----ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 723 SRIRVVDGID-----LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 723 g~I~VwD~~~-----~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+.|..++... ....+. .......++|+++|+++++...++.|..|+...
T Consensus 185 ~~i~~~~~~~~~~~~~~~~~~---~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G 238 (302)
T d2p4oa1 185 MLLLRIPVDSTDKPGEPEIFV---EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR 238 (302)
T ss_dssp TEEEEEEBCTTSCBCCCEEEE---ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred CeEEecccccccccccccccc---CCCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence 9998888322 111111 122345689999999888888888888886643
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.24 E-value=0.00026 Score=74.77 Aligned_cols=198 Identities=8% Similarity=0.023 Sum_probs=124.8
Q ss_pred CCEEEEEecCCcEEEEEeC--------CCcEEEEeCCCCcEEEEEe-----cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 568 DDVLDLSWSKSQHLLSSSM--------DKTVRLWHLSSKTCLKIFS-----HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs~--------DgtV~lWDl~t~~~~~~~~-----h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
.....++|.+++.|+..+. +++|..||..++....... .......++|.+ +++.|+++.....|..
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~ 96 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEE
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEE
Confidence 3456789999966655543 3578899998887654432 123467899999 8888888877777888
Q ss_pred EeCCCCcEEEeccCC-----CcEEEEEECCCCCEEEEEEC---------------CCeEEEEECCCCeeeeecccccccc
Q 002407 635 WSIPERQVVDWNDLH-----EMVTAACYTPDGQGALVGSY---------------KGSCHLYNTSENKLQQKSPINLQNK 694 (927)
Q Consensus 635 WDl~t~~~v~~~~~~-----~~V~sla~spdg~~l~tgs~---------------Dg~I~IwDl~~~~~~~~~~i~~~~~ 694 (927)
++...+......... ..++.+++.++|.+.++-.. .|.|+.++... +.....
T Consensus 97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~------- 168 (314)
T d1pjxa_ 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVD------- 168 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEE-------
T ss_pred EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEee-------
Confidence 897665433222111 13678999999987776422 23455555432 222111
Q ss_pred cccCCCCCeEEEEEcCCCC----cEEEEEECCCcEEEEECC---cce--EEEEeec--CCcceEEEEEecCCCEEEEEEC
Q 002407 695 KKRSHQRKITGFQFAPGSS----SEVLVTSADSRIRVVDGI---DLV--HKFKGFR--NTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 695 ~~~~h~~~Vtsl~fspdg~----~~Llsgs~Dg~I~VwD~~---~~~--~~~~~~~--~~~~v~sv~fspdg~~Lasgs~ 763 (927)
......+.++|+|++. .++++-+..+.|..||.. ... ..+.... .....-.+++..+|++.++...
T Consensus 169 ---~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~ 245 (314)
T d1pjxa_ 169 ---TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp ---EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred ---CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC
Confidence 1223357889988754 345555678889988732 111 1111111 1123457899999999888888
Q ss_pred CCcEEEEECCCCCC
Q 002407 764 DSYVYVWKYEAESR 777 (927)
Q Consensus 764 Dg~I~IWdl~s~~~ 777 (927)
.+.|++|+.+.+..
T Consensus 246 ~g~I~~~dp~~g~~ 259 (314)
T d1pjxa_ 246 SSHIEVFGPDGGQP 259 (314)
T ss_dssp TTEEEEECTTCBSC
T ss_pred CCEEEEEeCCCCEE
Confidence 89999999876543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=5.7e-05 Score=84.68 Aligned_cols=323 Identities=12% Similarity=0.097 Sum_probs=158.7
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEe---------CCCcEEEEecCcCcccceeecccccCc
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG---------EDCVIHVWQVVESERKGELLEKQEDGH 502 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs---------~DgtVrVWdv~~~~~~~~l~~~~~~~~ 502 (927)
.|.+|+..+++-..+....++ +.-.+....|||||++|+... ..+.+.|+|+.++....... ....
T Consensus 38 ~i~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~---~~~~ 112 (465)
T d1xfda1 38 TVRLWNVETNTSTVLIEGKKI--ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP---PEVS 112 (465)
T ss_dssp CEEEBCGGGCCCEEEECTTTT--TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC---TTCC
T ss_pred cEEEEECCCCCEEEEEcCccc--cccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccC---ccCC
Confidence 456666665544333322222 223566788999999988764 35678899998876432211 1122
Q ss_pred cccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCC---------CCEEEE
Q 002407 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL---------DDVLDL 573 (927)
Q Consensus 503 ~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~---------~~V~~l 573 (927)
...+....|+|+|..++...................... .+..-..+.|.. ..-..+
T Consensus 113 ~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~--------------~g~~~~i~nG~~d~vyeee~~~~~~a~ 178 (465)
T d1xfda1 113 NAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVS--------------TGKEGVIYNGLSDWLYEEEILKTHIAH 178 (465)
T ss_dssp SCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEEC--------------CCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred ccccceeeeccCCceEEEEecceEEEEecCCCceEEEec--------------ccCcceeeccccchhhhhhhccccceE
Confidence 233456789999999887654432221111110000000 000000111111 112456
Q ss_pred EecCC-cEEEEEeCC-C---------------------------------cEEEEeCCCCcEEEEEe-------cCCceE
Q 002407 574 SWSKS-QHLLSSSMD-K---------------------------------TVRLWHLSSKTCLKIFS-------HSDYVT 611 (927)
Q Consensus 574 ~~spd-~~L~Sgs~D-g---------------------------------tV~lWDl~t~~~~~~~~-------h~~~V~ 611 (927)
.|||| .+|+....| . .+.++|+.++....... ....+.
T Consensus 179 ~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~ 258 (465)
T d1xfda1 179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYIT 258 (465)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEE
T ss_pred EECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceee
Confidence 67777 455554321 1 24455554443221111 223477
Q ss_pred EEEEccCCCCEEEEEEC-C---CcEEEEeCCCCcEEEecc--CCCc----EEEEEECCCCCEEEE--EE-CCC--eEEEE
Q 002407 612 CIQFNPVDDRYFISGSL-D---AKVRIWSIPERQVVDWND--LHEM----VTAACYTPDGQGALV--GS-YKG--SCHLY 676 (927)
Q Consensus 612 ~v~fsp~dg~~L~sgs~-D---g~I~IWDl~t~~~v~~~~--~~~~----V~sla~spdg~~l~t--gs-~Dg--~I~Iw 676 (927)
.+.|.| ++++++.... + ..|.++|..++++..... .... -....|+|+|+.++. .+ .+| .++.+
T Consensus 259 ~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~ 337 (465)
T d1xfda1 259 MVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHI 337 (465)
T ss_dssp EEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEE
T ss_pred eeEEcC-CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEE
Confidence 889998 7776655432 2 248889999987665332 1111 234678999985432 22 233 34444
Q ss_pred ECCCCeeeeecccccccccccCCCCCeEEE-EEcCCCCcEEEEEECCC--cEEEEE--CC--cceEEEEe-ecCCcceEE
Q 002407 677 NTSENKLQQKSPINLQNKKKRSHQRKITGF-QFAPGSSSEVLVTSADS--RIRVVD--GI--DLVHKFKG-FRNTNSQIS 748 (927)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl-~fspdg~~~Llsgs~Dg--~I~VwD--~~--~~~~~~~~-~~~~~~v~s 748 (927)
.+........-. ..+......-.|+.+ .|.+++..+++++..++ .-+||. .. .....+.. .........
T Consensus 338 ~~~~~~~~~~~~---~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~ 414 (465)
T d1xfda1 338 TVSSSQPNSSND---NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFS 414 (465)
T ss_dssp EEECSSCCSSSC---CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCE
T ss_pred EeccccccCCCc---eeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEE
Confidence 332111000000 000011233445665 58888776656665442 334444 11 11111110 112334568
Q ss_pred EEEecCCCEEEEEECC---CcEEEEECCCCCC
Q 002407 749 ASLTANGRYVVSASED---SYVYVWKYEAESR 777 (927)
Q Consensus 749 v~fspdg~~Lasgs~D---g~I~IWdl~s~~~ 777 (927)
+.|||++++++..... -.+.|++..+++.
T Consensus 415 ~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~ 446 (465)
T d1xfda1 415 ASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKK 446 (465)
T ss_dssp EEECTTSSEEEEECCSSSSCCEEEEETTTCCE
T ss_pred EEECCCCCEEEEEeecCCCCeEEEEECCCCCE
Confidence 8999999998855433 3477777665543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.13 E-value=0.00039 Score=73.48 Aligned_cols=201 Identities=10% Similarity=0.093 Sum_probs=131.6
Q ss_pred EEccCCCCEEEEEecCCcE-EEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECC----CcEEEE
Q 002407 562 SFQGHLDDVLDLSWSKSQH-LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLD----AKVRIW 635 (927)
Q Consensus 562 ~l~gH~~~V~~l~~spd~~-L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~D----g~I~IW 635 (927)
.+......+..++|.+++. +++-...+.|+.|+..+++....+. .......|+|.+ +++++++...+ +.|...
T Consensus 34 ~~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~ 112 (319)
T d2dg1a1 34 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAA 112 (319)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEE
T ss_pred EeccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEE
Confidence 3333444567899998854 4555578899999998887666554 566789999999 89887765432 345556
Q ss_pred eCCCCcEEEeccC---CCcEEEEEECCCCCEEEEEEC------CCeEEEEECCCCeeeeecccccccccccCCCCCeEEE
Q 002407 636 SIPERQVVDWNDL---HEMVTAACYTPDGQGALVGSY------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGF 706 (927)
Q Consensus 636 Dl~t~~~v~~~~~---~~~V~sla~spdg~~l~tgs~------Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl 706 (927)
+.....+...... ...+..+++.++|.+.++... .+.+..++.......... ......+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~----------~~~~~pnGi 182 (319)
T d2dg1a1 113 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII----------QNISVANGI 182 (319)
T ss_dssp CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE----------EEESSEEEE
T ss_pred cCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEe----------eccceeeee
Confidence 6666555443322 346788999999986665322 234555655443322211 122346789
Q ss_pred EEcCCCCcEEEEEECCCcEEEEECCc---ceEE-----EEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 707 QFAPGSSSEVLVTSADSRIRVVDGID---LVHK-----FKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 707 ~fspdg~~~Llsgs~Dg~I~VwD~~~---~~~~-----~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
+|+|+++.++++-+..+.|+.|+... .... ..........-.+++..+|++.++....+.|.+|+-+
T Consensus 183 a~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~ 257 (319)
T d2dg1a1 183 ALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 257 (319)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence 99999986667777889999998421 1111 1111122234579999999988888889999999954
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.08 E-value=0.00081 Score=69.27 Aligned_cols=234 Identities=9% Similarity=0.126 Sum_probs=136.8
Q ss_pred eeeecCCCCeEEEccCceEEEEeccCcccccceeeee-EeecCCCCEEEEEEcCCC-CEEEEE-eCCCcEEEEecCcCcc
Q 002407 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQ-EIQAHNGSIWSIKFSLDG-RYLASA-GEDCVIHVWQVVESER 490 (927)
Q Consensus 414 ~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q-~L~gH~~~I~~vafSpdG-~~LaSg-s~DgtVrVWdv~~~~~ 490 (927)
++...++. +.++-....+|++|+.... +...+... .-.+.......+++.++. .++++. +.++.|.+++.. +..
T Consensus 28 vavd~dg~-i~VaD~~n~rI~v~d~~G~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~ 104 (279)
T d1q7fa_ 28 VAVNAQND-IIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQF 104 (279)
T ss_dssp EEECTTCC-EEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCE
T ss_pred EEEcCCCC-EEEEECCCCEEEEEeCCCC-EEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-ccc
Confidence 33334443 4344455678999986532 22222100 001122244566666553 444433 345567666643 333
Q ss_pred cceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEE--ccCCC
Q 002407 491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF--QGHLD 568 (927)
Q Consensus 491 ~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l--~gH~~ 568 (927)
...+ ..........++..+++.+++.......+ .+++..++.+..+ ..+..
T Consensus 105 ~~~~----~~~~~~~p~~~avd~~G~i~v~~~~~~~~-----------------------~~~~~~g~~~~~~g~~~~~~ 157 (279)
T d1q7fa_ 105 VRKF----GATILQHPRGVTVDNKGRIIVVECKVMRV-----------------------IIFDQNGNVLHKFGCSKHLE 157 (279)
T ss_dssp EEEE----CTTTCSCEEEEEECTTSCEEEEETTTTEE-----------------------EEECTTSCEEEEEECTTTCS
T ss_pred eeec----CCCcccccceeccccCCcEEEEeecccee-----------------------eEeccCCceeeccccccccc
Confidence 3222 11222334455666666655554333322 2334445555554 34566
Q ss_pred CEEEEEecCCc-EEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceEEEEEccCCCCEEEEEEC-CCcEEEEeCCCCcEE
Q 002407 569 DVLDLSWSKSQ-HLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSL-DAKVRIWSIPERQVV 643 (927)
Q Consensus 569 ~V~~l~~spd~-~L~Sgs~DgtV~lWDl~t~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs~-Dg~I~IWDl~t~~~v 643 (927)
....+++.+++ .+++....+.|++||.. ++.+..+. .......|++.+ +++++++-.. ++.|.+|+ .+++.+
T Consensus 158 ~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~-~~G~~~ 234 (279)
T d1q7fa_ 158 FPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFT-QDGQLI 234 (279)
T ss_dssp SEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEEC-TTSCEE
T ss_pred ccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCccccccc-CCeEEEEECCCCcEEEEEC-CCCCEE
Confidence 78889998885 45566677899999975 56666665 344578999999 8887776544 44699998 457665
Q ss_pred EeccC---CCcEEEEEECCCCCEEEEEECCCeEEEEECCCC
Q 002407 644 DWNDL---HEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 644 ~~~~~---~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~ 681 (927)
..+.. ......|++.|+|.+ +++..++.|++|.....
T Consensus 235 ~~~~~~~~~~~p~~vav~~dG~l-~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 235 SALESKVKHAQCFDVALMDDGSV-VLASKDYRLYIYRYVQL 274 (279)
T ss_dssp EEEEESSCCSCEEEEEEETTTEE-EEEETTTEEEEEECSCC
T ss_pred EEEeCCCCCCCEeEEEEeCCCcE-EEEeCCCeEEEEEeeee
Confidence 44322 246889999999965 55667899999987654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=5.5e-05 Score=84.86 Aligned_cols=153 Identities=14% Similarity=0.206 Sum_probs=98.9
Q ss_pred EecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceEEEEEccCCCCEEEEEE---------CCCcEEEEeCCCC
Q 002407 574 SWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS----HSDYVTCIQFNPVDDRYFISGS---------LDAKVRIWSIPER 640 (927)
Q Consensus 574 ~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~----h~~~V~~v~fsp~dg~~L~sgs---------~Dg~I~IWDl~t~ 640 (927)
.|.+++.++.-..+|.|.+||+.+++....+. ....+....|+| |+++|+... ..+.+.++|+.++
T Consensus 23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECC-CCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 57777555555678899999999887755554 234677889999 999888764 3467899999998
Q ss_pred cEEEeccC---CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccC---------CCCCeEEEEE
Q 002407 641 QVVDWNDL---HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRS---------HQRKITGFQF 708 (927)
Q Consensus 641 ~~v~~~~~---~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~---------h~~~Vtsl~f 708 (927)
....+... ...+....|+|||+.||-.. ++.|++.+..++...+...-........+ ....-.++.|
T Consensus 102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~W 180 (465)
T d1xfda1 102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW 180 (465)
T ss_dssp CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE
T ss_pred ceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEE
Confidence 87665332 23456688999999988875 67888888877654433210000000000 0112257789
Q ss_pred cCCCCcEEEEEECCCcEEEE
Q 002407 709 APGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~Vw 728 (927)
+|+|+.+++.-..+..|..+
T Consensus 181 SPDgk~iaf~~~D~s~V~~~ 200 (465)
T d1xfda1 181 SPDGTRLAYAAINDSRVPIM 200 (465)
T ss_dssp CTTSSEEEEEEEECTTSCEE
T ss_pred CCCCCeEEEEEeccccccee
Confidence 99998544444444544444
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.02 E-value=0.0036 Score=64.98 Aligned_cols=185 Identities=9% Similarity=0.029 Sum_probs=122.2
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-----cCCceEEEEEccCCCCEEEEEEC----CCcEEEEeCC
Q 002407 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-----HSDYVTCIQFNPVDDRYFISGSL----DAKVRIWSIP 638 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-----h~~~V~~v~fsp~dg~~L~sgs~----Dg~I~IWDl~ 638 (927)
..+.++++.+++.|+.++.+ -|.++|..+++...... ....++.+.+.| ++++.++... .+.-.+|.+.
T Consensus 59 ~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~ 136 (295)
T d2ghsa1 59 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA 136 (295)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeec
Confidence 35677888888777777765 58899999988765543 123578999999 8887666532 2345677777
Q ss_pred CCcEEEeccCCCcEEEEEECCCCCEEEEE-ECCCeEEEEECCCCeee--eecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 639 ERQVVDWNDLHEMVTAACYTPDGQGALVG-SYKGSCHLYNTSENKLQ--QKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 639 t~~~v~~~~~~~~V~sla~spdg~~l~tg-s~Dg~I~IwDl~~~~~~--~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
.+++......-...+.++|+++++.++.. +..+.|..|++...... ....+. ...........++++..+|. +
T Consensus 137 ~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~---~~~~~~~g~pdG~~vD~~Gn-l 212 (295)
T d2ghsa1 137 KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVF---IDSTGIKGGMDGSVCDAEGH-I 212 (295)
T ss_dssp TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEE---EECTTSSSEEEEEEECTTSC-E
T ss_pred CCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEE---eccCcccccccceEEcCCCC-E
Confidence 77766655555677899999999876555 55778999987532211 110000 00123445678899999886 6
Q ss_pred EEEEECCCcEEEEEC-CcceEEEEeecCCcceEEEEEe-cCCCEEEE
Q 002407 716 VLVTSADSRIRVVDG-IDLVHKFKGFRNTNSQISASLT-ANGRYVVS 760 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~-~~~~~~~~~~~~~~~v~sv~fs-pdg~~Las 760 (927)
.++.-..+.|..||. .+.+..+... ...+++++|- +|.+.|+.
T Consensus 213 Wva~~~~g~V~~~dp~G~~~~~i~lP--~~~~T~~~FGG~d~~~Lyv 257 (295)
T d2ghsa1 213 WNARWGEGAVDRYDTDGNHIARYEVP--GKQTTCPAFIGPDASRLLV 257 (295)
T ss_dssp EEEEETTTEEEEECTTCCEEEEEECS--CSBEEEEEEESTTSCEEEE
T ss_pred EeeeeCCCceEEecCCCcEeeEecCC--CCceEEEEEeCCCCCEEEE
Confidence 666667888999995 3444444432 3468899996 66655543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.95 E-value=0.0014 Score=68.30 Aligned_cols=215 Identities=13% Similarity=0.103 Sum_probs=136.1
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
.+.|+--..++|..|+..+++... + .....+.++++.++|.++++ +.+ -|.++|..+++..... .....
T Consensus 31 ~l~wvDi~~~~I~r~d~~~g~~~~-~------~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~-~~~~~- 99 (295)
T d2ghsa1 31 TAWWFNILERELHELHLASGRKTV-H------ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHA-ELESD- 99 (295)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEE-E------ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEE-CSSTT-
T ss_pred EEEEEECCCCEEEEEECCCCeEEE-E------ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEe-eeecC-
Confidence 345666677889999887775432 1 13457889999999977765 444 5888888766422110 00000
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL 581 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L 581 (927)
.....++++.+.+++.|
T Consensus 100 ---------------------------------------------------------------~~~~~~nd~~vd~~G~i 116 (295)
T d2ghsa1 100 ---------------------------------------------------------------LPGNRSNDGRMHPSGAL 116 (295)
T ss_dssp ---------------------------------------------------------------CTTEEEEEEEECTTSCE
T ss_pred ---------------------------------------------------------------CCcccceeeEECCCCCE
Confidence 01123566667777655
Q ss_pred EEEeC-----CCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEE-EEEECCCcEEEEeCCCC------cE---EEec
Q 002407 582 LSSSM-----DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYF-ISGSLDAKVRIWSIPER------QV---VDWN 646 (927)
Q Consensus 582 ~Sgs~-----DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L-~sgs~Dg~I~IWDl~t~------~~---v~~~ 646 (927)
..++. .+.-.+|.+..++....+..-...+.++|++ +++.| ++-+..+.|..|++... +. +...
T Consensus 117 w~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~-d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~ 195 (295)
T d2ghsa1 117 WIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST 195 (295)
T ss_dssp EEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT
T ss_pred EEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecC-CCceEEEeecccceeeEeeecccccccccceEEEeccC
Confidence 55543 2344566666676666555445668899999 76654 55566778988887431 11 1222
Q ss_pred cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc-CCCCcEEEEEEC
Q 002407 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA-PGSSSEVLVTSA 721 (927)
Q Consensus 647 ~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs-pdg~~~Llsgs~ 721 (927)
......-.+++..+|.+.++....+.|..||. .++.+..+.+ ....+++++|- ++.+.+++++..
T Consensus 196 ~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~l---------P~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 196 GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV---------PGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp TSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC---------SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred cccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecC---------CCCceEEEEEeCCCCCEEEEEECC
Confidence 34456888999999998877777889999996 5666666543 23468999996 566655555543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.65 E-value=0.0025 Score=64.08 Aligned_cols=227 Identities=12% Similarity=0.130 Sum_probs=116.1
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC-CC-----cEEEEecCcCcccceeec-ccccCcc
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DC-----VIHVWQVVESERKGELLE-KQEDGHL 503 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~-Dg-----tVrVWdv~~~~~~~~l~~-~~~~~~~ 503 (927)
+.|.+++...++..+ |..+.+.+...+|||||++||-... ++ .|.++++..++....... .......
T Consensus 21 ~dl~~~d~~~g~~~~------Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~ 94 (281)
T d1k32a2 21 DDLWEHDLKSGSTRK------IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRR 94 (281)
T ss_dssp TEEEEEETTTCCEEE------EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTE
T ss_pred CcEEEEECCCCCEEE------EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCcc
Confidence 357777877766533 4567888999999999999986542 22 366667666654332111 1111222
Q ss_pred ccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEE
Q 002407 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLS 583 (927)
Q Consensus 504 ~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~S 583 (927)
.......|+|++..++......... .................. +......+.+.+.+.++.
T Consensus 95 ~~~~~~~~spdg~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 155 (281)
T d1k32a2 95 MFTDVAGFDPDGNLIISTDAMQPFS-----------------SMTCLYRVENDGINFVPL--NLGPATHILFADGRRVIG 155 (281)
T ss_dssp ECSEEEEECTTCCEEEEECTTSSST-----------------TCCEEEEEEGGGTEEEEC--CSCSCSEEEEETTEEEEE
T ss_pred ccccccccCCCCCEEEEEEccCCCc-----------------cceeeeeecCCCceeEEe--cCCccceeeecCCCeEEE
Confidence 3445678999998877643221100 000001111111222111 122222233333333222
Q ss_pred E-eCC-----------CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC--cEEEEeCCCCcEEEeccCC
Q 002407 584 S-SMD-----------KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA--KVRIWSIPERQVVDWNDLH 649 (927)
Q Consensus 584 g-s~D-----------gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg--~I~IWDl~t~~~v~~~~~~ 649 (927)
. ... ....++.....................+.+ + .++.....++ .|.++|+.+++........
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~ 233 (281)
T d1k32a2 156 RNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT 233 (281)
T ss_dssp ESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC
T ss_pred eeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeec-c-ccceecccccccceEEEeCCCCceEEeecCC
Confidence 2 111 112222222233333333444455555654 3 2333333333 4778888887766654433
Q ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
. .....|+|||+.|+.. .++.|+++|+.+++....
T Consensus 234 ~-~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 234 D-YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp S-SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred C-cccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence 2 2234689999988764 478899999998876543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.36 E-value=0.0068 Score=60.69 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=69.2
Q ss_pred CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEEC-CC-----cEEEEeCCCCcEEEeccCC-------CcE
Q 002407 586 MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL-DA-----KVRIWSIPERQVVDWNDLH-------EMV 652 (927)
Q Consensus 586 ~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~-Dg-----~I~IWDl~t~~~v~~~~~~-------~~V 652 (927)
.++.|.+.|+.+++..+...+...+...+|+| |++.|+.... ++ .|.+++..+++...+.... ...
T Consensus 19 ~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~ 97 (281)
T d1k32a2 19 CCDDLWEHDLKSGSTRKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFT 97 (281)
T ss_dssp ETTEEEEEETTTCCEEEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECS
T ss_pred eCCcEEEEECCCCCEEEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccc
Confidence 45678888999998877666888899999999 9998886543 22 3778888888877654433 245
Q ss_pred EEEEECCCCCEEEEEECC------CeEEEEECCCCee
Q 002407 653 TAACYTPDGQGALVGSYK------GSCHLYNTSENKL 683 (927)
Q Consensus 653 ~sla~spdg~~l~tgs~D------g~I~IwDl~~~~~ 683 (927)
..+.|+|+|+.|+..... ..+...+......
T Consensus 98 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (281)
T d1k32a2 98 DVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF 134 (281)
T ss_dssp EEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred cccccCCCCCEEEEEEccCCCccceeeeeecCCCcee
Confidence 678899999998876432 2345555555443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.15 E-value=0.041 Score=57.91 Aligned_cols=150 Identities=10% Similarity=0.067 Sum_probs=87.4
Q ss_pred cCCCCEEEEEECCC-----------cEEEEeCCCCcEEE----eccCCCcEEEEEECCCCCEEEEEECC-CeEEEEECCC
Q 002407 617 PVDDRYFISGSLDA-----------KVRIWSIPERQVVD----WNDLHEMVTAACYTPDGQGALVGSYK-GSCHLYNTSE 680 (927)
Q Consensus 617 p~dg~~L~sgs~Dg-----------~I~IWDl~t~~~v~----~~~~~~~V~sla~spdg~~l~tgs~D-g~I~IwDl~~ 680 (927)
+.++++++.|+.+. .+.+||..+++-.. ...+.......++.++|++++.|+.+ ..+.+||..+
T Consensus 28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~ 107 (387)
T d1k3ia3 28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS 107 (387)
T ss_dssp TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCcc
Confidence 33777777777531 26789998865321 22222333456788999999998765 5799999998
Q ss_pred CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC------CcEEEEECCcceEEEEeecC------------
Q 002407 681 NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD------SRIRVVDGIDLVHKFKGFRN------------ 742 (927)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D------g~I~VwD~~~~~~~~~~~~~------------ 742 (927)
......... .....-..++..+++. +++.++.+ ..+.+||.....-.......
T Consensus 108 ~~w~~~~~~--------~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 178 (387)
T d1k3ia3 108 DSWIPGPDM--------QVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGL 178 (387)
T ss_dssp TEEEECCCC--------SSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGG
T ss_pred Ccccccccc--------cccccccceeeecCCc-eeeeccccccccccceeeeecCCCCceeecCCCcccccccccccce
Confidence 776543221 1112223566777776 66666543 46889996544322211000
Q ss_pred --CcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 743 --TNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 743 --~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
......+..-++|+.++.+...+.+.+++..+.
T Consensus 179 ~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~ 213 (387)
T d1k3ia3 179 YRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG 213 (387)
T ss_dssp GTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred eeccceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence 000111233456777777777777777776654
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.94 E-value=0.25 Score=49.56 Aligned_cols=227 Identities=6% Similarity=-0.079 Sum_probs=125.1
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecCcCcccceeecccccCccccEEEE
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA-GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSg-s~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v 509 (927)
..|+.................+..+...|..|+|.+..+.|.-. ..++.|+..++...... .+.. ........+
T Consensus 10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~-~v~~----~~~~~p~~i 84 (263)
T d1npea_ 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TIIR----QDLGSPEGI 84 (263)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EEEC----TTCCCEEEE
T ss_pred CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE-EEEE----eccccccEE
Confidence 46666665555554444444556666778999999877766655 45677888887654322 2211 111223333
Q ss_pred ccCCCCCee-cccccCCceeeecccccccccccccCcccccceEeecCCCceEEE-ccCCCCEEEEEecCC-cEEEEEeC
Q 002407 510 NGSPEPTSL-SPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-QGHLDDVLDLSWSKS-QHLLSSSM 586 (927)
Q Consensus 510 ~~spd~~~l-a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l-~gH~~~V~~l~~spd-~~L~Sgs~ 586 (927)
+....+..| .+......+ .+..+.++....+ .........|+..|. ++|+-...
T Consensus 85 AvD~~~~~lY~~d~~~~~I-----------------------~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~ 141 (263)
T d1npea_ 85 ALDHLGRTIFWTDSQLDRI-----------------------EVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW 141 (263)
T ss_dssp EEETTTTEEEEEETTTTEE-----------------------EEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred EEeccCCeEEEeccCCCEE-----------------------EEEecCCceEEEEecccccCCcEEEEecccCcEEEeec
Confidence 333222222 121111222 1222333333233 233456889999886 76664433
Q ss_pred C-Cc--EEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEE-ECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCC
Q 002407 587 D-KT--VRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISG-SLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDG 661 (927)
Q Consensus 587 D-gt--V~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sg-s~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg 661 (927)
. +. |.--++.......... .-.....|++.+ ..+.|+.+ ...+.|...++.................|++. ++
T Consensus 142 ~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~-~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~-~~ 219 (263)
T d1npea_ 142 NRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GK 219 (263)
T ss_dssp CSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TT
T ss_pred CCCCcEEEEecCCCCCceeeeeecccccceEEEee-cCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE-CC
Confidence 2 23 4444565544443333 335678999998 55555444 56678999998776554444333445677775 34
Q ss_pred CEEEEEECCCeEEEEECCCCeeeeec
Q 002407 662 QGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 662 ~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
..+++-...+.|...|..+++.....
T Consensus 220 ~lYwtd~~~~~I~~~~~~~g~~~~~~ 245 (263)
T d1npea_ 220 NLYYTDWKTNSVIAMDLAISKEMDTF 245 (263)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCccceEE
Confidence 34444446688999999888766543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.57 E-value=0.45 Score=47.52 Aligned_cols=200 Identities=9% Similarity=0.003 Sum_probs=123.5
Q ss_pred cCCCCEEEEEecCC-cEEEEE-eCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 565 GHLDDVLDLSWSKS-QHLLSS-SMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 565 gH~~~V~~l~~spd-~~L~Sg-s~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
.+...+..|+|... ++|+-+ ...+.|+..++........+. ....+..|++....+++.++-...+.|.+.++....
T Consensus 33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~ 112 (263)
T d1npea_ 33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ 112 (263)
T ss_dssp EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence 34445778888865 655544 566789999988766555554 335788999987455555565667789999988765
Q ss_pred EEEeccC-CCcEEEEEECCCCCEEEEEECC---CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEE
Q 002407 642 VVDWNDL-HEMVTAACYTPDGQGALVGSYK---GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (927)
Q Consensus 642 ~v~~~~~-~~~V~sla~spdg~~l~tgs~D---g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Ll 717 (927)
....... ...+..+++.|...++...... ..|.-.++......... .......+++++.+.+..+++
T Consensus 113 ~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~---------~~~~~~P~glaiD~~~~~lYw 183 (263)
T d1npea_ 113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA---------QDNLGLPNGLTFDAFSSQLCW 183 (263)
T ss_dssp CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE---------CTTCSCEEEEEEETTTTEEEE
T ss_pred EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeee---------eecccccceEEEeecCcEEEE
Confidence 4433333 3678999999977766654332 23554566543322211 123345789999987775556
Q ss_pred EEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEE-ECCCcEEEEECCCCC
Q 002407 718 VTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSA-SEDSYVYVWKYEAES 776 (927)
Q Consensus 718 sgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasg-s~Dg~I~IWdl~s~~ 776 (927)
+-...+.|...+........... .......+++. +.+|.-. ...+.|...+..+++
T Consensus 184 ~d~~~~~I~~~~~~g~~~~~v~~-~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~ 240 (263)
T d1npea_ 184 VDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISK 240 (263)
T ss_dssp EETTTTEEEEEETTEEEEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTE
T ss_pred EeCCCCEEEEEECCCCCeEEEEC-CCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCc
Confidence 55677889998865432222111 12234567665 3445444 456778877776654
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.53 E-value=0.067 Score=57.30 Aligned_cols=161 Identities=8% Similarity=0.013 Sum_probs=97.5
Q ss_pred CCEEEEEecC--C-cEEEEEeCCC------------------cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEE
Q 002407 568 DDVLDLSWSK--S-QHLLSSSMDK------------------TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISG 626 (927)
Q Consensus 568 ~~V~~l~~sp--d-~~L~Sgs~Dg------------------tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sg 626 (927)
..+..+...+ . .+++..+.+. .+.++|..+.+....+.-......+.++| +++++++.
T Consensus 132 ~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~-dGK~af~T 210 (459)
T d1fwxa2 132 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFST 210 (459)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEE
T ss_pred CCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCCChhccccCC-CCCEEEEE
Confidence 3455555544 3 6677666532 36788999988887777666778899999 99998887
Q ss_pred ECCC---------------cEEEEeC-----------------------CCC---cEEEeccCCCcEEEEEECCCCCEEE
Q 002407 627 SLDA---------------KVRIWSI-----------------------PER---QVVDWNDLHEMVTAACYTPDGQGAL 665 (927)
Q Consensus 627 s~Dg---------------~I~IWDl-----------------------~t~---~~v~~~~~~~~V~sla~spdg~~l~ 665 (927)
+.+. .+.++++ ... ..+..+........+.++|||++++
T Consensus 211 syNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~ 290 (459)
T d1fwxa2 211 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLC 290 (459)
T ss_dssp ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEE
T ss_pred eccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEE
Confidence 7531 1333333 221 1222333334566788999999988
Q ss_pred EEEC-CCeEEEEECCCCeeeeecccccc--cccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 666 VGSY-KGSCHLYNTSENKLQQKSPINLQ--NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 666 tgs~-Dg~I~IwDl~~~~~~~~~~i~~~--~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
+++. +.++.++|++.-.....-.+... ........-.....+|...|. ...+---|.+|.-|+.
T Consensus 291 VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~-aytslfids~v~kw~~ 357 (459)
T d1fwxa2 291 VAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGN-AYTSLFLDSQVVKWNI 357 (459)
T ss_dssp EECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSE-EEEEETTTTEEEEEEH
T ss_pred EeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCce-EEEEeeccceEEEEec
Confidence 7754 78899999864221110000000 000012233455668888763 4555568999999994
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.51 E-value=0.39 Score=48.74 Aligned_cols=191 Identities=15% Similarity=0.208 Sum_probs=117.9
Q ss_pred ecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC-cEEEeccCC----
Q 002407 575 WSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-QVVDWNDLH---- 649 (927)
Q Consensus 575 ~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~-~~v~~~~~~---- 649 (927)
.+|...+++--...++.++|+++.+.++.+....+|.--.|- +.+.|+..+ +..|+-|++... .++..++.+
T Consensus 70 MhP~~~IiALrag~~LQiFnletK~klks~~~~e~VvfWkWi--s~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~ 146 (327)
T d1utca2 70 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA 146 (327)
T ss_dssp ECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEES--SSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred cCCCCcEEEEecCCeEEEEehhHhhhhceEEcCCCcEEEEec--CCCEEEEEc-CCceEEEcccCCCCchhhhhhccccc
Confidence 456533333223668999999999999999988888777886 455665554 467999999542 344433332
Q ss_pred -CcEEEEEECCCCCEEEEEEC-------CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC--CCcEEEEE
Q 002407 650 -EMVTAACYTPDGQGALVGSY-------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG--SSSEVLVT 719 (927)
Q Consensus 650 -~~V~sla~spdg~~l~tgs~-------Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd--g~~~Llsg 719 (927)
..|..-..+++.++++..+- .|.+.+|..+.+..... .+|......+.+..+ ...+++.+
T Consensus 147 ~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~i----------eGhaa~F~~~~~~g~~~~~~lf~fa 216 (327)
T d1utca2 147 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI----------EGHAASFAQFKMEGNAEESTLFCFA 216 (327)
T ss_dssp TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEE----------CCSEEEEEEECCTTCSSCEEEEEEE
T ss_pred CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccc----------cceeeeeEEEEcCCCCCCceEEEEE
Confidence 46777888899998876432 46788998877654322 233332222222111 01122222
Q ss_pred ---ECCCcEEEEECCcc--------eEEEEee----cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 720 ---SADSRIRVVDGIDL--------VHKFKGF----RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 720 ---s~Dg~I~VwD~~~~--------~~~~~~~----~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
...++++|.+.... ......+ .......++.+++.-..+..-+.-|.|++||++++...
T Consensus 217 ~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i 290 (327)
T d1utca2 217 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 290 (327)
T ss_dssp EEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred ECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEE
Confidence 22367888873220 1111111 11233457888888889999999999999999998654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.32 E-value=0.21 Score=52.18 Aligned_cols=202 Identities=8% Similarity=0.030 Sum_probs=105.9
Q ss_pred EEEecCCcE-EEEEeCC-CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECC------CcEEEEeCCCCc
Q 002407 572 DLSWSKSQH-LLSSSMD-KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLD------AKVRIWSIPERQ 641 (927)
Q Consensus 572 ~l~~spd~~-L~Sgs~D-gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~D------g~I~IWDl~t~~ 641 (927)
..++.+++. ++.|+.+ ..+.+||..+......-. ....-..++..+ ++++++.|+.+ ..+.+||..+.+
T Consensus 80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 80 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCceeeeccccccccccceeeeecCCCCc
Confidence 345667754 4444443 579999998876643322 222234566666 88888888753 358999998876
Q ss_pred EEEeccCC---------------CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEE
Q 002407 642 VVDWNDLH---------------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGF 706 (927)
Q Consensus 642 ~v~~~~~~---------------~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl 706 (927)
-....... .....+...++|+.++.+...+.+.+++..+............. ........-.++
T Consensus 159 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 237 (387)
T d1k3ia3 159 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNR-GVAPDAMCGNAV 237 (387)
T ss_dssp EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETT-EECCCCBTCEEE
T ss_pred eeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCc-ccCcccccccEE
Confidence 44322111 11122334567888888877888888888877654332211110 001111112233
Q ss_pred EEcCCCCcEEEEEECC--------CcEEEEECC---cceEEEEee---cCCcceEEEEEecCCCEEEEEECCC-------
Q 002407 707 QFAPGSSSEVLVTSAD--------SRIRVVDGI---DLVHKFKGF---RNTNSQISASLTANGRYVVSASEDS------- 765 (927)
Q Consensus 707 ~fspdg~~~Llsgs~D--------g~I~VwD~~---~~~~~~~~~---~~~~~v~sv~fspdg~~Lasgs~Dg------- 765 (927)
.+...+..+++.++.. ....+.+.. ......... .....-.+.+..+||++++.|+.+.
T Consensus 238 ~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~ 317 (387)
T d1k3ia3 238 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS 317 (387)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred EeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCC
Confidence 3333333355665432 123333321 111112111 1111223456668999999988532
Q ss_pred ----cEEEEECCCC
Q 002407 766 ----YVYVWKYEAE 775 (927)
Q Consensus 766 ----~I~IWdl~s~ 775 (927)
.+.+||..+.
T Consensus 318 ~~~~~ve~Ydp~~~ 331 (387)
T d1k3ia3 318 TPVFTPEIYVPEQD 331 (387)
T ss_dssp SBCCCCEEEEGGGT
T ss_pred cEeceEEEEECCCC
Confidence 4678887664
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=1 Score=44.82 Aligned_cols=210 Identities=9% Similarity=-0.007 Sum_probs=126.3
Q ss_pred CceEEEccCCCCEEEEEecCC-cEEEEE-eCCCcEEEEeCCCCc----EEEEEe-cCCceEEEEEccCCCCEEEEEECCC
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-QHLLSS-SMDKTVRLWHLSSKT----CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDA 630 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~~L~Sg-s~DgtV~lWDl~t~~----~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg 630 (927)
.....+......+..|+|.+. ++|+-. ...+.|+-.++.... ....+. ....+..|++.+..+++.++-...+
T Consensus 20 ~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~ 99 (266)
T d1ijqa1 20 SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG 99 (266)
T ss_dssp CCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred CcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCC
Confidence 333344445567788999876 665544 456667777765322 112222 3345778999875666666666677
Q ss_pred cEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEE--CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE
Q 002407 631 KVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGS--YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 631 ~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs--~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
.|.+.++....... .......+..+++.|...+|.... ..+.|...++......... .......++++
T Consensus 100 ~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~---------~~~~~~p~gl~ 170 (266)
T d1ijqa1 100 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---------TENIQWPNGIT 170 (266)
T ss_dssp EEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE---------CSSCSCEEEEE
T ss_pred EEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc---------ccccceeeEEE
Confidence 89999998776544 333346789999998665555543 3456777777655433221 12335578999
Q ss_pred EcCCCCcEEEEEECCCcEEEEECC--cceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 708 FAPGSSSEVLVTSADSRIRVVDGI--DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 708 fspdg~~~Llsgs~Dg~I~VwD~~--~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
+.+.+..++++-...+.|...+.. .................+++. ++.+..+-..++.|+..+..++..
T Consensus 171 iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~ 241 (266)
T d1ijqa1 171 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 241 (266)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred eeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcc
Confidence 998877566666777889888843 333333333333345567766 333444444667788877766543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.39 E-value=0.3 Score=54.59 Aligned_cols=135 Identities=9% Similarity=0.093 Sum_probs=85.7
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEecCC--c-----------------------------------eEEEEEccCCCCE
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHSD--Y-----------------------------------VTCIQFNPVDDRY 622 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~--~-----------------------------------V~~v~fsp~dg~~ 622 (927)
.++.+..+|.+.++|..+++++....... . -...+++| +..+
T Consensus 316 ~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~ 394 (560)
T d1kv9a2 316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-GTGL 394 (560)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-TTTE
T ss_pred eeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccC-CCCe
Confidence 47778899999999999999876543110 0 01345666 4445
Q ss_pred EEEEEC------------------------------------CCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEE
Q 002407 623 FISGSL------------------------------------DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALV 666 (927)
Q Consensus 623 L~sgs~------------------------------------Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~t 666 (927)
++.... .|.|.-||+.+++++-..........-.+.-.+.++++
T Consensus 395 ~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~ 474 (560)
T d1kv9a2 395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ 474 (560)
T ss_dssp EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE
T ss_pred eecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEE
Confidence 544332 24577889999887754444433322223335678889
Q ss_pred EECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC
Q 002407 667 GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (927)
Q Consensus 667 gs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg 723 (927)
|+.||.++.||..+++.+..+.+.. ..+..+ +.+.-+|+++|++.+..+
T Consensus 475 G~~dg~l~A~Da~tGe~LW~~~l~~-----~~~~~P---~ty~~dGkqyv~v~aG~g 523 (560)
T d1kv9a2 475 GTAAGQMHAYSADKGEALWQFEAQS-----GIVAAP---MTFELAGRQYVAIMAGWG 523 (560)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSS-----CCCSCC---EEEEETTEEEEEEEECCC
T ss_pred ECCCCcEEEEECCCCcEeEEEECCC-----CccccC---EEEEECCEEEEEEEeCCC
Confidence 9999999999999999998765421 112222 344456776666655443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=95.30 E-value=0.31 Score=54.98 Aligned_cols=84 Identities=10% Similarity=0.037 Sum_probs=53.6
Q ss_pred CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc
Q 002407 630 AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 630 g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
|.|.-||+.+++++-.......+..-.++-.|.++++|+.||.++.||..+++.+.++.+.. .....++ .|.
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~-----~~~a~P~---tY~ 524 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS-----GAIGYPM---TYT 524 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-----CCCSCCE---EEE
T ss_pred ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCC-----CcccCCe---EEE
Confidence 45777888888776433333322222233457788889999999999999999998875421 1233333 344
Q ss_pred CCCCcEEEEEEC
Q 002407 710 PGSSSEVLVTSA 721 (927)
Q Consensus 710 pdg~~~Llsgs~ 721 (927)
-+|+++|++...
T Consensus 525 ~dGkQYvav~~G 536 (596)
T d1w6sa_ 525 HKGTQYVAIYYG 536 (596)
T ss_dssp ETTEEEEEEEEC
T ss_pred ECCEEEEEEEec
Confidence 577777766543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.00 E-value=0.41 Score=53.59 Aligned_cols=84 Identities=5% Similarity=-0.052 Sum_probs=51.6
Q ss_pred CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc
Q 002407 630 AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 630 g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
|.|.-+|+.+++.+-.........+-.+.-.+.++++|+.||.++.+|.++++.+.++.+.- .....+ +.|.
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~-----~~~a~P---~ty~ 515 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS-----GGIGSP---MTYS 515 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-----CCCSCC---EEEE
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCC-----Cceecc---eEEE
Confidence 35667777887776433332222111122246678889999999999999999998765421 122223 4455
Q ss_pred CCCCcEEEEEEC
Q 002407 710 PGSSSEVLVTSA 721 (927)
Q Consensus 710 pdg~~~Llsgs~ 721 (927)
.+|+++|++...
T Consensus 516 ~dGkqYi~v~~g 527 (571)
T d2ad6a1 516 FKGKQYIGSMYG 527 (571)
T ss_dssp ETTEEEEEEEEC
T ss_pred ECCEEEEEEEec
Confidence 578777766543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=2.1 Score=42.42 Aligned_cols=178 Identities=8% Similarity=-0.051 Sum_probs=109.6
Q ss_pred CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEE-CCCcEEEEeCCCCc-----EEEeccCCCcEEEEEECCCC
Q 002407 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPERQ-----VVDWNDLHEMVTAACYTPDG 661 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~t~~-----~v~~~~~~~~V~sla~spdg 661 (927)
..|+..++.+.+....+.....+..|+|++ ..+.|+-.. ..+.|.-.++.... .......-..+..+++.+.+
T Consensus 10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~-~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~ 88 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (266)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEET-TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CeEEEEECCCCcceeeeCCCCceEEEEEEe-CCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence 458888998877766666667788999998 555555443 45667766664321 11122223456788888766
Q ss_pred CEEEEE-ECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE-ECCCcEEEEECCc-ceEEEE
Q 002407 662 QGALVG-SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT-SADSRIRVVDGID-LVHKFK 738 (927)
Q Consensus 662 ~~l~tg-s~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg-s~Dg~I~VwD~~~-~~~~~~ 738 (927)
..|... ...+.|.+.++......... .........+++.|....++++- +..+.|.-.+... ....+.
T Consensus 89 ~~lY~~d~~~~~I~v~~~~g~~~~~~~---------~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~ 159 (266)
T d1ijqa1 89 SNIYWTDSVLGTVSVADTKGVKRKTLF---------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159 (266)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEE---------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred ceEEEEecCCCEEEeEecCCceEEEEE---------cCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc
Confidence 655554 45678999999876543322 13345678999998766444443 2334566666432 222222
Q ss_pred eecCCcceEEEEEecCCCEEEEE-ECCCcEEEEECCCCC
Q 002407 739 GFRNTNSQISASLTANGRYVVSA-SEDSYVYVWKYEAES 776 (927)
Q Consensus 739 ~~~~~~~v~sv~fspdg~~Lasg-s~Dg~I~IWdl~s~~ 776 (927)
. ........+++++.++.|.-+ ...+.|...++....
T Consensus 160 ~-~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~ 197 (266)
T d1ijqa1 160 T-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 197 (266)
T ss_dssp C-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred c-cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence 2 233556789999887776665 456788888887643
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.85 E-value=0.7 Score=49.18 Aligned_cols=203 Identities=13% Similarity=0.142 Sum_probs=123.8
Q ss_pred EEEecC---C-cEEEE-EeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccC-CCCEEEEEECCC-------------
Q 002407 572 DLSWSK---S-QHLLS-SSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPV-DDRYFISGSLDA------------- 630 (927)
Q Consensus 572 ~l~~sp---d-~~L~S-gs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~-dg~~L~sgs~Dg------------- 630 (927)
.+.+.. | .+|+. -..+..|-+.|+.+.++.+++. ....+..+...+. ...|++..+.+.
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 455544 4 34444 4467889999999999877664 4556676665431 455777766532
Q ss_pred -----cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCC---------------eEEEEECCC-------Ce-
Q 002407 631 -----KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKG---------------SCHLYNTSE-------NK- 682 (927)
Q Consensus 631 -----~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg---------------~I~IwDl~~-------~~- 682 (927)
.+.++|..+.++............+.++++|+++++.+.+. .+.+++... ++
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~ 248 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 248 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence 36678998888776555566677899999999999877431 244444310 00
Q ss_pred -eeee-ccccccc------ccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEE-----------EeecCC
Q 002407 683 -LQQK-SPINLQN------KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF-----------KGFRNT 743 (927)
Q Consensus 683 -~~~~-~~i~~~~------~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~-----------~~~~~~ 743 (927)
.... ..+.... .....-.+....+.++|||..+++++..+.++.|+|..++...+ ......
T Consensus 249 ~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg 328 (459)
T d1fwxa2 249 QELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG 328 (459)
T ss_dssp EEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC
T ss_pred EEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccC
Confidence 0000 0000000 00011123345788999999777778889999999954321111 111112
Q ss_pred cceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 744 NSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 744 ~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
-.....+|+..|....+.--|..|.-|++..
T Consensus 329 lgPLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 329 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cCccccccCCCceEEEEeeccceEEEEecch
Confidence 2234568888886666666899999999964
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=94.73 E-value=0.19 Score=56.55 Aligned_cols=84 Identities=11% Similarity=0.083 Sum_probs=52.4
Q ss_pred cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 631 KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 631 ~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
.|.-||+.+++++-..........-.++-.|.++++|+.||.++.||..+++.+.++.+.- .....+ +.|.-
T Consensus 458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~-----~~~~~P---~ty~~ 529 (573)
T d1kb0a2 458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT-----GVVAAP---STYMV 529 (573)
T ss_dssp EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-----CCCSCC---EEEEE
T ss_pred cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCC-----CccccC---EEEEE
Confidence 4666777777776443333222222233367788899999999999999999998775421 122233 33445
Q ss_pred CCCcEEEEEECC
Q 002407 711 GSSSEVLVTSAD 722 (927)
Q Consensus 711 dg~~~Llsgs~D 722 (927)
+|+++|++.+.-
T Consensus 530 ~GkQYv~v~~G~ 541 (573)
T d1kb0a2 530 DGRQYVSVAVGW 541 (573)
T ss_dssp TTEEEEEEEECC
T ss_pred CCEEEEEEEeCC
Confidence 677666665543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.53 E-value=3.1 Score=42.75 Aligned_cols=96 Identities=15% Similarity=0.156 Sum_probs=59.4
Q ss_pred CCCcEEEEeCCCCc--EE--EEEe--cCCceEEEEEccCCCCEEEEEEC---------------CCcEEEEeCCCCcEEE
Q 002407 586 MDKTVRLWHLSSKT--CL--KIFS--HSDYVTCIQFNPVDDRYFISGSL---------------DAKVRIWSIPERQVVD 644 (927)
Q Consensus 586 ~DgtV~lWDl~t~~--~~--~~~~--h~~~V~~v~fsp~dg~~L~sgs~---------------Dg~I~IWDl~t~~~v~ 644 (927)
...+|.+|++.... .. ..+. .....+.|++.. ++.+++|-.. -+...+|....++...
T Consensus 122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~ 200 (340)
T d1v04a_ 122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRV 200 (340)
T ss_dssp TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEE
T ss_pred CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEE
Confidence 34567777765332 22 2222 234578899888 8887777311 1233444444444433
Q ss_pred eccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCCCe
Q 002407 645 WNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENK 682 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~~~ 682 (927)
....-...+.++++||+++|+++. ..+.|++|++....
T Consensus 201 ~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 201 VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred EcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 334445789999999998877664 56789999987544
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.51 E-value=3.6 Score=43.44 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=26.5
Q ss_pred cCCCCEEEEEEcCCCCEEEEE-eC----CCcEEEEecCcCccc
Q 002407 454 AHNGSIWSIKFSLDGRYLASA-GE----DCVIHVWQVVESERK 491 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSg-s~----DgtVrVWdv~~~~~~ 491 (927)
++.-.+..+++|||+++||-+ +. -.+|++.|+.+++.+
T Consensus 122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~ 164 (430)
T d1qfma1 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL 164 (430)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE
T ss_pred cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceec
Confidence 344445567889999988843 22 346999999988644
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.98 E-value=5.8 Score=43.70 Aligned_cols=99 Identities=11% Similarity=-0.020 Sum_probs=62.1
Q ss_pred CCcEEEEeCCCCcEEEEEecCC--------------------------------------ce-EEEEEccCCCCEEEEEE
Q 002407 587 DKTVRLWHLSSKTCLKIFSHSD--------------------------------------YV-TCIQFNPVDDRYFISGS 627 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~~h~~--------------------------------------~V-~~v~fsp~dg~~L~sgs 627 (927)
.|.|+-+|+.+++.+..+.+.. .+ ..+.+.+ ...+++.+.
T Consensus 175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~-~~g~~y~~t 253 (571)
T d2ad6a1 175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGS 253 (571)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccch-hcCeeeeec
Confidence 6789999999999988764211 11 2245566 555555544
Q ss_pred C----------------CCcEEEEeCCCCcEEEeccC--C--------CcEEEEEECCCCC---EEEEEECCCeEEEEEC
Q 002407 628 L----------------DAKVRIWSIPERQVVDWNDL--H--------EMVTAACYTPDGQ---GALVGSYKGSCHLYNT 678 (927)
Q Consensus 628 ~----------------Dg~I~IWDl~t~~~v~~~~~--~--------~~V~sla~spdg~---~l~tgs~Dg~I~IwDl 678 (927)
. ...+.-.|+.+++++-.+.. + .......+..+++ .++.++.+|.++++|.
T Consensus 254 g~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr 333 (571)
T d2ad6a1 254 GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNR 333 (571)
T ss_dssp CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEET
T ss_pred ccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEec
Confidence 3 24577789999988743321 1 1222222333454 4677888999999999
Q ss_pred CCCeeeee
Q 002407 679 SENKLQQK 686 (927)
Q Consensus 679 ~~~~~~~~ 686 (927)
.+++.+..
T Consensus 334 ~tG~~i~~ 341 (571)
T d2ad6a1 334 ENGNLIVA 341 (571)
T ss_dssp TTCCEEEE
T ss_pred CCCcEeee
Confidence 99987643
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=93.92 E-value=6.1 Score=43.78 Aligned_cols=57 Identities=9% Similarity=0.034 Sum_probs=38.1
Q ss_pred CcEEEEeCCCCcEEEEEe---cC-------CceEEEEEccCCC---CEEEEEECCCcEEEEeCCCCcEEE
Q 002407 588 KTVRLWHLSSKTCLKIFS---HS-------DYVTCIQFNPVDD---RYFISGSLDAKVRIWSIPERQVVD 644 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~---h~-------~~V~~v~fsp~dg---~~L~sgs~Dg~I~IWDl~t~~~v~ 644 (927)
..|.-.|+.+++.+..++ |. ..+..+..-..++ ..++....+|.+.++|..+++++.
T Consensus 278 ~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~ 347 (596)
T d1w6sa_ 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (596)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceee
Confidence 457888999999988886 21 1122222111133 467788889999999999998774
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=92.61 E-value=9 Score=41.91 Aligned_cols=189 Identities=12% Similarity=0.115 Sum_probs=105.0
Q ss_pred CCcEEEEeCCCCcEEEEEecC-------------------------------Cce-EEEEEccCCCCEEEEEEC------
Q 002407 587 DKTVRLWHLSSKTCLKIFSHS-------------------------------DYV-TCIQFNPVDDRYFISGSL------ 628 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~~h~-------------------------------~~V-~~v~fsp~dg~~L~sgs~------ 628 (927)
.|.|+-+|+.+++.+..+... ..+ ..+++.| ...+++.+..
T Consensus 177 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~-~~~l~y~~tgn~~~~~ 255 (560)
T d1kv9a2 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (560)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred cceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCccccccccc-ccCeeeecCCCCcccc
Confidence 367999999999999887410 011 1245666 4555544321
Q ss_pred -------------CCcEEEEeCCCCcEEEeccC--C--------CcEEEEEECCCCC---EEEEEECCCeEEEEECCCCe
Q 002407 629 -------------DAKVRIWSIPERQVVDWNDL--H--------EMVTAACYTPDGQ---GALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 629 -------------Dg~I~IWDl~t~~~v~~~~~--~--------~~V~sla~spdg~---~l~tgs~Dg~I~IwDl~~~~ 682 (927)
...|.-.|+.+++++-.+.. + ....-+.+..+++ .++.+..+|.++++|..+++
T Consensus 256 ~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~ 335 (560)
T d1kv9a2 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (560)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCc
Confidence 23467778899987643221 1 1122223333443 57778889999999999998
Q ss_pred eeeecccccccc---------------ccc----------CCC--CCeEEEEEcCCCCcEEEEEEC--------------
Q 002407 683 LQQKSPINLQNK---------------KKR----------SHQ--RKITGFQFAPGSSSEVLVTSA-------------- 721 (927)
Q Consensus 683 ~~~~~~i~~~~~---------------~~~----------~h~--~~Vtsl~fspdg~~~Llsgs~-------------- 721 (927)
++.........- ... ... ..-...++.|+.. ++++...
T Consensus 336 ~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~-~~yvp~~~~~~~~~~~~~~~~ 414 (560)
T d1kv9a2 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG-LVYIPYQEVPGVYRNEGKDFV 414 (560)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT-EEEEEEEECCEEECCCGGGCC
T ss_pred ccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCC-eeecccccccceeeccccccc
Confidence 775432211000 000 000 0011345666554 3333321
Q ss_pred ----------------------CCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 722 ----------------------DSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 722 ----------------------Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
.|.|.-||..+.....+.... .+...-.++-.+.+++.|+.||.++.+|.++++.+
T Consensus 415 ~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L 492 (560)
T d1kv9a2 415 TRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (560)
T ss_dssp CCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence 145666776555544443322 11212223345678888999999999999998865
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.75 E-value=7.4 Score=39.05 Aligned_cols=197 Identities=9% Similarity=0.114 Sum_probs=111.9
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCC-CcEEEEEe-c----CCceEEEEEccCCCCEEEEEEC-------CCcEEEE
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSS-KTCLKIFS-H----SDYVTCIQFNPVDDRYFISGSL-------DAKVRIW 635 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t-~~~~~~~~-h----~~~V~~v~fsp~dg~~L~sgs~-------Dg~I~IW 635 (927)
+|.--.|-.+..|+..+ +..|+-|+++. ..+.+.|. | ...|..-..++ +.++++..+. .|.+.+|
T Consensus 104 ~VvfWkWis~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLY 181 (327)
T d1utca2 104 DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLY 181 (327)
T ss_dssp CCCEEEESSSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEE
T ss_pred CcEEEEecCCCEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECC-CCCEEEEEeEecCCCceeEEEEEE
Confidence 34444565555444443 35689999853 35667775 2 24566667777 7776654432 3678899
Q ss_pred eCCCCcEEEeccCCCcEEEEEECC--CC-CEEEEE---ECCCeEEEEECCCCee-eeec---ccccccccccCCCCCeEE
Q 002407 636 SIPERQVVDWNDLHEMVTAACYTP--DG-QGALVG---SYKGSCHLYNTSENKL-QQKS---PINLQNKKKRSHQRKITG 705 (927)
Q Consensus 636 Dl~t~~~v~~~~~~~~V~sla~sp--dg-~~l~tg---s~Dg~I~IwDl~~~~~-~~~~---~i~~~~~~~~~h~~~Vts 705 (927)
..+.+......+|-.....+.+.- +. +.|+.+ ...+.++|.++..... ...+ ...+... ......-..+
T Consensus 182 S~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fp-pea~~DFPva 260 (327)
T d1utca2 182 SVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP-PEAQNDFPVA 260 (327)
T ss_dssp ETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCC-TTCTTCCEEE
T ss_pred EeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECC-ccccCCcEEE
Confidence 987765433333322222221110 00 122222 2236789988865321 1111 1111100 0123344567
Q ss_pred EEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEE
Q 002407 706 FQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYV 769 (927)
Q Consensus 706 l~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~I 769 (927)
+..++.-. ++..-+.-|.|++||..+....+...-....|...+-..+..=+++...+|.|..
T Consensus 261 mqvs~kyg-iiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 261 MQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp EEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred EEeeccCC-EEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence 78887655 8888999999999999888888877766666765555555555666667777654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=91.16 E-value=2.1 Score=44.16 Aligned_cols=180 Identities=12% Similarity=0.054 Sum_probs=98.0
Q ss_pred EEEEEecCCcEEEEEeC-------------CCcEEEEeCCCCcEE-EEEe-cC-------CceEEEEEccC-CCC-EEEE
Q 002407 570 VLDLSWSKSQHLLSSSM-------------DKTVRLWHLSSKTCL-KIFS-HS-------DYVTCIQFNPV-DDR-YFIS 625 (927)
Q Consensus 570 V~~l~~spd~~L~Sgs~-------------DgtV~lWDl~t~~~~-~~~~-h~-------~~V~~v~fsp~-dg~-~L~s 625 (927)
--+|...|++.++.++. .|.|.++|+.+.... ..+. .. -....|.+... ++. +|++
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 34677778866554442 388999998765432 2221 11 12334443221 343 3444
Q ss_pred EE---CCCcEEEEeCCCC--cEE--EeccCC--CcEEEEEECCCCCEEEEEE-----------------CCCeEEEEECC
Q 002407 626 GS---LDAKVRIWSIPER--QVV--DWNDLH--EMVTAACYTPDGQGALVGS-----------------YKGSCHLYNTS 679 (927)
Q Consensus 626 gs---~Dg~I~IWDl~t~--~~v--~~~~~~--~~V~sla~spdg~~l~tgs-----------------~Dg~I~IwDl~ 679 (927)
.. ...+|-+|++... ++. ....++ ...+.+++..++.++++-. ..+.+..||..
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~ 196 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 196 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence 32 3456878876432 222 122222 4688999999998877731 12334444443
Q ss_pred CCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecCCcceEEEEEec-CCC
Q 002407 680 ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTA-NGR 756 (927)
Q Consensus 680 ~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fsp-dg~ 756 (927)
..+... ......+.++++|+++.++++-+..++|++|+... .........-....-.+.+.+ +|.
T Consensus 197 ~~~~~~------------~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~ 264 (340)
T d1v04a_ 197 DVRVVA------------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGD 264 (340)
T ss_dssp CEEEEE------------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCC
T ss_pred ceEEEc------------CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCE
Confidence 222111 22345889999999987777778889999998432 122222222334455677765 454
Q ss_pred EEEEE
Q 002407 757 YVVSA 761 (927)
Q Consensus 757 ~Lasg 761 (927)
+.+.+
T Consensus 265 lwva~ 269 (340)
T d1v04a_ 265 LWVGC 269 (340)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44444
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.23 E-value=1.2 Score=49.78 Aligned_cols=83 Identities=14% Similarity=0.063 Sum_probs=55.0
Q ss_pred CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc
Q 002407 630 AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 630 g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
|.|.-+|+.+++++-.......+..-.++..+..+++|+.||.++.||..+++.+..+.+.- ..+..+ +.|.
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~-----~~~~~P---~ty~ 537 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS-----GIVSPP---ITWE 537 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-----CCCSCC---EEEE
T ss_pred CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCC-----CccccC---EEEE
Confidence 56777888888877544444333322334467788889999999999999999998876421 122223 4455
Q ss_pred CCCCcEEEEEE
Q 002407 710 PGSSSEVLVTS 720 (927)
Q Consensus 710 pdg~~~Llsgs 720 (927)
.+|+++|++..
T Consensus 538 ~~G~qYv~i~a 548 (582)
T d1flga_ 538 QDGEQYLGVTV 548 (582)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEe
Confidence 67876666554
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.22 E-value=17 Score=37.84 Aligned_cols=98 Identities=12% Similarity=0.147 Sum_probs=60.7
Q ss_pred EEEEEecCC-cEEE-EEeCCC----cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECC--------------
Q 002407 570 VLDLSWSKS-QHLL-SSSMDK----TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD-------------- 629 (927)
Q Consensus 570 V~~l~~spd-~~L~-Sgs~Dg----tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D-------------- 629 (927)
+..++++|+ .+++ +-+..| +|+++|+.+++.+...-.......++|.+ ++..|+-...+
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~~~~~ 205 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTN 205 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcC-CCCEEEEEEeccccCcccccccccC
Confidence 445567888 4443 333333 59999999998765322222235788999 87777654433
Q ss_pred --CcEEEEeCCCCc---EEEecc--CCCcEEEEEECCCCCEEEEEE
Q 002407 630 --AKVRIWSIPERQ---VVDWND--LHEMVTAACYTPDGQGALVGS 668 (927)
Q Consensus 630 --g~I~IWDl~t~~---~v~~~~--~~~~V~sla~spdg~~l~tgs 668 (927)
..|..|.+.+.. .+.... ....+..+..++++++++...
T Consensus 206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~ 251 (430)
T d1qfma1 206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI 251 (430)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence 257778876642 122222 224567788899999987644
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=87.69 E-value=17 Score=37.19 Aligned_cols=188 Identities=13% Similarity=0.209 Sum_probs=103.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEcc---CC--CCEEEEEEC--C--CcEEEEeCCC--CcEEEecc
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNP---VD--DRYFISGSL--D--AKVRIWSIPE--RQVVDWND 647 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp---~d--g~~L~sgs~--D--g~I~IWDl~t--~~~v~~~~ 647 (927)
.+++.....+-|++||+. |+.+..+. .+.++.|..-. .+ ...|+.++. + ..|.+|.+.. ..+..+..
T Consensus 41 SlI~gTdK~~Gl~vYdL~-G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~ 118 (353)
T d1h6la_ 41 SKLITTNKKSGLAVYSLE-GKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD 118 (353)
T ss_dssp CEEEEEETTSCCEEEETT-CCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred cEEEEEcCcCCEEEEcCC-CcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence 567777777779999996 66666554 34555554321 01 222444442 2 2577887642 23222221
Q ss_pred C-------CCcEEEEEE--CCC-CC-EEEEEECCCeEEEEECC---CCeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 648 L-------HEMVTAACY--TPD-GQ-GALVGSYKGSCHLYNTS---ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 648 ~-------~~~V~sla~--spd-g~-~l~tgs~Dg~I~IwDl~---~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
. ...+..+|+ ++. |. ++++...+|.+..|.+. .+........ .......+-+|.+.+...
T Consensus 119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr------~f~~~~q~EGCVvDde~~ 192 (353)
T d1h6la_ 119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVR------AFKMNSQTEGMAADDEYG 192 (353)
T ss_dssp SSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEE------EEECSSCEEEEEEETTTT
T ss_pred cccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeee------ccCCCCccceEEEeCCCC
Confidence 1 123556666 664 44 56667778998888763 2222221110 113445788999998776
Q ss_pred cEEEEEECCCcEEEEECC----cceEEE-E--eecCCcceEEEEE--ecCCC-EEE-EEECCCcEEEEECCCC
Q 002407 714 SEVLVTSADSRIRVVDGI----DLVHKF-K--GFRNTNSQISASL--TANGR-YVV-SASEDSYVYVWKYEAE 775 (927)
Q Consensus 714 ~~Llsgs~Dg~I~VwD~~----~~~~~~-~--~~~~~~~v~sv~f--spdg~-~La-sgs~Dg~I~IWdl~s~ 775 (927)
.|+++-++..|..++.. ...... . +......+-.+++ ..++. ||+ +.-.+++..|||....
T Consensus 193 -~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 193 -SLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp -EEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred -cEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 78888888777666621 111111 1 1112334455554 33333 544 4446788999998764
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=87.57 E-value=1.7 Score=48.27 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=55.9
Q ss_pred CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEE--EEECCCCC-EE
Q 002407 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTA--ACYTPDGQ-GA 664 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~s--la~spdg~-~l 664 (927)
|.|.-||+.+++.+..+.+..+...=...- .+.+|++|+.|+.++.+|..+++.+-.+.....+.. +.|..+|+ ||
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv 535 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence 568889999999998887554433222233 677888999999999999999999876655543222 55666786 44
Q ss_pred EEE
Q 002407 665 LVG 667 (927)
Q Consensus 665 ~tg 667 (927)
++.
T Consensus 536 ~v~ 538 (573)
T d1kb0a2 536 SVA 538 (573)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=85.40 E-value=22 Score=36.27 Aligned_cols=151 Identities=11% Similarity=0.142 Sum_probs=87.3
Q ss_pred CCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEEC------CCCCEEEEEECC----CeEEEEECCCC-eeeeec
Q 002407 619 DDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYT------PDGQGALVGSYK----GSCHLYNTSEN-KLQQKS 687 (927)
Q Consensus 619 dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~s------pdg~~l~tgs~D----g~I~IwDl~~~-~~~~~~ 687 (927)
...+|+.....+-|.+||+. |+.+.... .+.++.+..- -...-+++++.. ..|.+|.+... ..+..+
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~ 116 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI 116 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence 45667776777779999996 66666544 2445555433 222335555532 35778877532 122221
Q ss_pred ccccccccccCCCCCeEEEEE--cCC-CCcEEEEEECCCcEEEEEC---Cc---ceEEEEeecCCcceEEEEEecCCCEE
Q 002407 688 PINLQNKKKRSHQRKITGFQF--APG-SSSEVLVTSADSRIRVVDG---ID---LVHKFKGFRNTNSQISASLTANGRYV 758 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~f--spd-g~~~Llsgs~Dg~I~VwD~---~~---~~~~~~~~~~~~~v~sv~fspdg~~L 758 (927)
.. ...........++++|+ ++. +..++++...+|.+..|.+ .. .......+.....+-.|.+......|
T Consensus 117 ~~--~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 117 TD--PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSL 194 (353)
T ss_dssp SC--SSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred cc--cccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcE
Confidence 11 00001122234677776 554 4445677788899888862 11 12333344456678899999999999
Q ss_pred EEEECCCcEEEEECC
Q 002407 759 VSASEDSYVYVWKYE 773 (927)
Q Consensus 759 asgs~Dg~I~IWdl~ 773 (927)
..+-++..|..++++
T Consensus 195 yisEE~~Giw~~~a~ 209 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAE 209 (353)
T ss_dssp EEEETTTEEEEEESS
T ss_pred EEecCccceEEEEec
Confidence 999887666555554
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=84.63 E-value=27 Score=36.67 Aligned_cols=35 Identities=6% Similarity=-0.046 Sum_probs=27.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~ 489 (927)
.-...++|+|.|||++|++--..|.|++++..++.
T Consensus 25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~ 59 (450)
T d1crua_ 25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGS 59 (450)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCc
Confidence 34578899999999988887557999998866554
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=81.77 E-value=5.1 Score=42.74 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=43.4
Q ss_pred cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 647 ~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
..-...++|+|.|+|++|++--..|.|++++..++.......+... .....-......|+|+|+
T Consensus 24 ~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~-~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 24 SNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEI-VNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC-CCCTTSSCSEEEEEECTT
T ss_pred CCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCcc-ccccCCCCceeeEEeCCC
Confidence 3345788999999999887765579999999888765543322111 011123456889999996
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=80.16 E-value=25 Score=33.17 Aligned_cols=153 Identities=12% Similarity=0.116 Sum_probs=90.2
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe--c--------CCceEEEEEccCCCCEEEEEECCCcEEEEeCC
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--H--------SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h--------~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~ 638 (927)
.|.++++......++|+....+.+|-++.|+..+... . .+.|..+.|-..+..-|+ +-|+.
T Consensus 105 RI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF---------~adl~ 175 (313)
T d2hu7a1 105 RILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLF---------TSNLS 175 (313)
T ss_dssp EEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEE---------EEETT
T ss_pred EEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEE---------EEecc
Confidence 4667777666788899988889999998887655443 2 223333333221222233 33444
Q ss_pred CCcEEEeccCCCcEEEEEECCCCCEEEEEECC---CeEEEEECCCCeeeeecccccccccc-cCCCCCeEEEEEcCCCCc
Q 002407 639 ERQVVDWNDLHEMVTAACYTPDGQGALVGSYK---GSCHLYNTSENKLQQKSPINLQNKKK-RSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 639 t~~~v~~~~~~~~V~sla~spdg~~l~tgs~D---g~I~IwDl~~~~~~~~~~i~~~~~~~-~~h~~~Vtsl~fspdg~~ 714 (927)
++.+.-+...++.++...+.+..+. +++... ....-+|++.++..... ++.+.+ ......|+-+-+.|++.
T Consensus 176 SG~lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve---~P~kd~~sy~p~~I~~~~Y~Pdd~- 250 (313)
T d2hu7a1 176 SGGLRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLE---LPSKDFSSYRPTAITWLGYLPDGR- 250 (313)
T ss_dssp TEEEEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECC---CSSCHHHHHCCSEEEEEEECTTSC-
T ss_pred cCCEEEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeee---cCcccceeecceEEEeeeeCCCCc-
Confidence 4444444444556667777776665 443321 22335688876654331 111111 12334567777999986
Q ss_pred EEEEEECCCcEEEEECCcceE
Q 002407 715 EVLVTSADSRIRVVDGIDLVH 735 (927)
Q Consensus 715 ~Llsgs~Dg~I~VwD~~~~~~ 735 (927)
+++++-.||.-++|...+.+.
T Consensus 251 L~iiakrdG~s~lF~nGk~in 271 (313)
T d2hu7a1 251 LAVVARREGRSAVFIDGERVE 271 (313)
T ss_dssp EEEEEEETTEEEEEETTEEEC
T ss_pred EEEEEecCCchheeecceEec
Confidence 778999999999998665544
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