Citrus Sinensis ID: 002414
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 926 | 2.2.26 [Sep-21-2011] | |||||||
| O65717 | 716 | Cyclic nucleotide-gated i | yes | no | 0.669 | 0.865 | 0.55 | 0.0 | |
| Q9LNJ0 | 711 | Probable cyclic nucleotid | no | no | 0.650 | 0.846 | 0.5 | 1e-170 | |
| Q9SKD7 | 706 | Probable cyclic nucleotid | no | no | 0.701 | 0.920 | 0.481 | 1e-167 | |
| Q9LD40 | 696 | Putative cyclic nucleotid | no | no | 0.663 | 0.882 | 0.491 | 1e-166 | |
| O82226 | 747 | Probable cyclic nucleotid | no | no | 0.651 | 0.807 | 0.453 | 1e-151 | |
| Q8RWS9 | 717 | Probable cyclic nucleotid | no | no | 0.708 | 0.914 | 0.431 | 1e-151 | |
| Q9M0A4 | 733 | Putative cyclic nucleotid | no | no | 0.642 | 0.811 | 0.451 | 1e-150 | |
| Q9FXH6 | 753 | Putative cyclic nucleotid | no | no | 0.649 | 0.798 | 0.425 | 1e-141 | |
| Q9S9N5 | 738 | Putative cyclic nucleotid | no | no | 0.643 | 0.807 | 0.420 | 1e-138 | |
| Q9SL29 | 678 | Putative cyclic nucleotid | no | no | 0.670 | 0.915 | 0.410 | 1e-133 |
| >sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/640 (55%), Positives = 443/640 (69%), Gaps = 20/640 (3%)
Query: 62 VGKSMLYLKIVLSPHGPL---WNWIFLISCLIAISLDPLFLYIPVISDEKKCLRLDNKLG 118
V K + +L P GP WN IF+++C+IA+SLDPLF Y+P+I D KKCL +D K+
Sbjct: 74 VSKGIGSTHKILDPQGPFLQRWNKIFVLACIIAVSLDPLFFYVPIIDDAKKCLGIDKKME 133
Query: 119 TAAIFLRSFLDFFHIIYVIFRLRTKSFAPCWEYPQRS-LNEYAQEITRKYLLFFLPIDLL 177
A LRSF D F+++++IF+ RT AP R L E +EI ++YL ID+L
Sbjct: 134 ITASVLRSFTDVFYVLHIIFQFRTGFIAPSSRVFGRGVLVEDKREIAKRYLSSHFIIDIL 193
Query: 178 AILPLPQVVVSVIIQTTRGSKVLSGLKLLKFFVIFQYVPRLIRIYPLFTNVTRTSCKLDE 237
A+LPLPQ+V+ +II RGS L+ +LKF V FQY+PR IRIYPL+ VTRTS L E
Sbjct: 194 AVLPLPQMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTE 253
Query: 238 SKFFKAAFNLLLYMVASHVFGALWYFFAIVREVACWKSACI-NHTGCSHASFYCH-DTAG 295
+ + AAFNL LYM+ASHVFGA WY F+I RE CWK AC N+ C YC +TAG
Sbjct: 254 TAWAGAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAG 313
Query: 296 NNTFVKDFCPTKPQNTSIFDFGIFQDALQSGIVEVTDFPQKFSHCFLWGLQNLSCFGQNL 355
N F+ + CP + NT++FDFGIF DALQSG+VE DFPQKF +CF WGLQNLS GQNL
Sbjct: 314 GNAFLNESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNL 373
Query: 356 QTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSKTIRSEEMRLKGQEIEQWMGFRKL 415
+TS+Y WE FA+ I+I+GLV F +LIGN+Q YLQS T R EEMR+K ++ EQWM R L
Sbjct: 374 KTSTYIWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLL 433
Query: 416 SRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSELGLELLLNVPLFQNLDAK 475
+L++++R Y QY W+ET+GVD ENLL+NLP DL+R+IK L L LL+ VP+F+ +D +
Sbjct: 434 PENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQ 493
Query: 476 TLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGD 535
LD +C L+PVLY EES+IV EGD +D MLF+MRGKL + T GGR F + YL AGD
Sbjct: 494 LLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGD 553
Query: 536 YYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHH 595
+ GEEL++WALDP+SS LPIS+RTVRA EVEAF L +D+L+ V S+ RRL KQL H
Sbjct: 554 FCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQF-RRLHSKQLRH 612
Query: 596 AFRVYSHQWRTWAACSIQAAWRRYKRRNLEEFLNAEENRLQGEWAAGG-GITSSLGATIY 654
FR YS QW+TWAAC IQAAWRRY ++ LEE L EENRLQ A G + SLGATIY
Sbjct: 613 TFRYYSQQWKTWAACFIQAAWRRYIKKKLEESLKEEENRLQDALAKEACGSSPSLGATIY 672
Query: 655 PSRFAAHALLAAQSNRS------------LLLQKPAEPDF 682
SRFAA+ L + + S +LLQKPAEPDF
Sbjct: 673 ASRFAANILRTIRRSGSVRKPRMPERMPPMLLQKPAEPDF 712
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Acts as cyclic nucleotide-gated ion channel. Can be activated by cyclic AMP which leads to an opening of the cation channel. May be responsible for cAMP-induced calcium entry in cells and thus should be involved in the calcium signal transduction. Could transport K(+), Na(+) and Pb(2+). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9SKD7|CNGC3_ARATH Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 | Back alignment and function description |
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| >sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SL29|CNG15_ARATH Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 926 | ||||||
| 225462733 | 709 | PREDICTED: cyclic nucleotide-gated ion c | 0.728 | 0.952 | 0.534 | 0.0 | |
| 255545024 | 838 | Cyclic nucleotide-gated ion channel, put | 0.658 | 0.727 | 0.558 | 0.0 | |
| 224135235 | 708 | predicted protein [Populus trichocarpa] | 0.657 | 0.860 | 0.558 | 0.0 | |
| 6969231 | 708 | cyclic nucleotide-gated calmodulin-bindi | 0.693 | 0.906 | 0.534 | 0.0 | |
| 356516029 | 715 | PREDICTED: cyclic nucleotide-gated ion c | 0.730 | 0.945 | 0.513 | 0.0 | |
| 224118210 | 709 | predicted protein [Populus trichocarpa] | 0.658 | 0.860 | 0.560 | 0.0 | |
| 449456377 | 713 | PREDICTED: cyclic nucleotide-gated ion c | 0.655 | 0.851 | 0.558 | 0.0 | |
| 356509281 | 715 | PREDICTED: cyclic nucleotide-gated ion c | 0.731 | 0.946 | 0.514 | 0.0 | |
| 356551532 | 718 | PREDICTED: cyclic nucleotide-gated ion c | 0.672 | 0.867 | 0.545 | 0.0 | |
| 449497318 | 714 | PREDICTED: cyclic nucleotide-gated ion c | 0.655 | 0.850 | 0.558 | 0.0 |
| >gi|225462733|ref|XP_002268992.1| PREDICTED: cyclic nucleotide-gated ion channel 1 [Vitis vinifera] gi|302143681|emb|CBI22542.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/700 (53%), Positives = 464/700 (66%), Gaps = 25/700 (3%)
Query: 3 RFFDLEGGAARESSGEINYGSSS-----AGRVLKPRVRRRLALEIERIRTNRQVSKAPKS 57
RF D + E IN G S A + + +R L ERI + R+ K+
Sbjct: 10 RFQDWSSERSSEGKIPINNGVRSGKIRLAINSVSGKFQRGLECGSERINSIRRSLKSFSF 69
Query: 58 RYGIVGKSMLYLKIVLSPHGPL---WNWIFLISCLIAISLDPLFLYIPVISDEKKCLRLD 114
R + S K +L P GP WN IF++SC+IA+SLDPLF YIPVI KKCL LD
Sbjct: 70 RRNLEKGSG---KKILDPQGPFLQKWNKIFVLSCIIAVSLDPLFFYIPVIDKLKKCLSLD 126
Query: 115 NKLGTAAIFLRSFLDFFHIIYVIFRLRTKSFAPCWEYPQRS-LNEYAQEITRKYLLFFLP 173
L A LRSF D F+I+++IF+ RT AP R L E + I R+YL +
Sbjct: 127 ESLQITASVLRSFTDIFYILHIIFQFRTGFIAPSSRVFGRGVLVEDSWAIARRYLSSYFL 186
Query: 174 IDLLAILPLPQVVVSVIIQTTRGSKVLSGLKLLKFFVIFQYVPRLIRIYPLFTNVTRTSC 233
ID+LA+LPLPQVV+ +II GSK ++ +LLKF V FQY+PR++R+ PL+ VTRTS
Sbjct: 187 IDILAVLPLPQVVIWIIIPKLGGSKYMNTKRLLKFVVFFQYIPRVLRVRPLYKEVTRTSG 246
Query: 234 KLDESKFFKAAFNLLLYMVASHVFGALWYFFAIVREVACWKSACINHTGCSHASFYCHDT 293
L E+ + AAFNL LYM+ASHV GA WY FAI RE CW AC N T C +S YC T
Sbjct: 247 ILTETAWAGAAFNLFLYMLASHVLGAFWYLFAIDRETTCWTKACGNDTSCIDSSLYCKGT 306
Query: 294 AGNNTFVKDFCPTKPQNTSIFDFGIFQDALQSGIVEVTDFPQKFSHCFLWGLQNLSCFGQ 353
N T CP NT++FDFGI DALQSG+VE TDFPQKF +CF WGLQNLS GQ
Sbjct: 307 V-NTTLFNASCPVIEPNTTVFDFGILLDALQSGVVESTDFPQKFFYCFWWGLQNLSSLGQ 365
Query: 354 NLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSKTIRSEEMRLKGQEIEQWMGFR 413
NL+TS+Y WE FA+ I+ISGLV F +LIGN+Q YLQS TIR EEMR+K ++ EQWM R
Sbjct: 366 NLKTSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTIRLEEMRVKRRDAEQWMSHR 425
Query: 414 KLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSELGLELLLNVPLFQNLD 473
L L++++R Y QY W+ET+GVD +NLL NLP DL+R+IK L L LL VP+F+ +D
Sbjct: 426 LLPESLRERIRRYEQYKWQETRGVDEQNLLINLPKDLRRDIKRHLCLALLRRVPMFEKMD 485
Query: 474 AKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSA 533
+ +D +C LKP LY E+S+IV EGD +D MLFVMRGKL + T GGR F + YL A
Sbjct: 486 EQLMDAMCDRLKPALYTEDSYIVREGDPVDEMLFVMRGKLSTMTTNGGRTGFLNSDYLKA 545
Query: 534 GDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQL 593
GD+ GEEL++WALDP+S+ LPIS+RTV A +EVEAF LM+D+L+ V S+ RRL KQL
Sbjct: 546 GDFCGEELLTWALDPHSTSNLPISTRTVLALSEVEAFALMADDLKFVASQF-RRLHSKQL 604
Query: 594 HHAFRVYSHQWRTWAACSIQAAWRRYKRRNLEEFLNAEENRLQGEWAAGGGITSSLGATI 653
H FR+YSHQWRTWAAC IQAAWRRY R+ LEE L EE+RLQ A GG + SLGATI
Sbjct: 605 RHTFRLYSHQWRTWAACFIQAAWRRYWRKKLEESLREEEDRLQDALAKAGGSSPSLGATI 664
Query: 654 YPSRFAAHALLAAQSNRS-----------LLLQKPAEPDF 682
Y SRFAA+AL A + N++ +LLQKPAEPDF
Sbjct: 665 YASRFAANALRALRRNKTRKARLPERISPILLQKPAEPDF 704
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255545024|ref|XP_002513573.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223547481|gb|EEF48976.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224135235|ref|XP_002322017.1| predicted protein [Populus trichocarpa] gi|222869013|gb|EEF06144.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|6969231|gb|AAF33670.1|AF079872_1 cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|356516029|ref|XP_003526699.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224118210|ref|XP_002317760.1| predicted protein [Populus trichocarpa] gi|222858433|gb|EEE95980.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449456377|ref|XP_004145926.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356509281|ref|XP_003523379.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356551532|ref|XP_003544128.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449497318|ref|XP_004160370.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 926 | ||||||
| TAIR|locus:2163776 | 716 | CNGC1 "cyclic nucleotide gated | 0.658 | 0.851 | 0.523 | 1.8e-167 | |
| TAIR|locus:2125206 | 696 | CNGC13 "cyclic nucleotide-gate | 0.663 | 0.882 | 0.467 | 4.6e-144 | |
| TAIR|locus:2039084 | 706 | CNGC3 "cyclic nucleotide gated | 0.647 | 0.849 | 0.474 | 5.3e-143 | |
| TAIR|locus:2174448 | 717 | CNGC5 "cyclic nucleotide gated | 0.644 | 0.832 | 0.433 | 2e-130 | |
| TAIR|locus:2061401 | 747 | CNGC6 "cyclic nucleotide-gated | 0.650 | 0.805 | 0.430 | 1.1e-128 | |
| TAIR|locus:2118836 | 733 | CNGC9 "cyclic nucleotide gated | 0.642 | 0.811 | 0.432 | 4.2e-127 | |
| TAIR|locus:2013139 | 753 | CNGC8 "cyclic nucleotide gated | 0.628 | 0.772 | 0.404 | 1.1e-122 | |
| TAIR|locus:2200502 | 738 | CNGC7 "cyclic nucleotide gated | 0.628 | 0.788 | 0.397 | 4.6e-120 | |
| TAIR|locus:2118816 | 720 | CNGC17 "cyclic nucleotide-gate | 0.720 | 0.926 | 0.359 | 8.6e-117 | |
| TAIR|locus:2039099 | 621 | CNGC11 "cyclic nucleotide-gate | 0.626 | 0.933 | 0.413 | 2.8e-114 |
| TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1629 (578.5 bits), Expect = 1.8e-167, P = 1.8e-167
Identities = 330/630 (52%), Positives = 415/630 (65%)
Query: 72 VLSPHGPL---WNWIFLISCLIAISLDPLFLYIPVISDEKKCLRLDNKLGTAAIFLRSFL 128
+L P GP WN IF+++C+IA+SLDPLF Y+P+I D KKCL +D K+ A LRSF
Sbjct: 84 ILDPQGPFLQRWNKIFVLACIIAVSLDPLFFYVPIIDDAKKCLGIDKKMEITASVLRSFT 143
Query: 129 DFFHIIYVIFRLRTKSFAPCWEYPQRS-LNEYAQEITRKYXXXXXXXXXXXXXXXXQVVV 187
D F+++++IF+ RT AP R L E +EI ++Y Q+V+
Sbjct: 144 DVFYVLHIIFQFRTGFIAPSSRVFGRGVLVEDKREIAKRYLSSHFIIDILAVLPLPQMVI 203
Query: 188 SVIIQTTRXXXXXXXXXXXXXXXIFQYVPRLIRIYPLFTNVTRTSCKLDESKFFKAAFNL 247
+II R FQY+PR IRIYPL+ VTRTS L E+ + AAFNL
Sbjct: 204 LIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNL 263
Query: 248 LLYMVASHVFGALWYFFAIVREVACWKSACI-NHTGCSHASFYCH-DTAGNNTFVKDFCP 305
LYM+ASHVFGA WY F+I RE CWK AC N+ C YC +TAG N F+ + CP
Sbjct: 264 FLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAFLNESCP 323
Query: 306 TKPQNTSIFDFGIFQDALQSGIVEVTDFPQKFSHCFLWGLQNLSCFGQNLQTSSYFWENF 365
+ NT++FDFGIF DALQSG+VE DFPQKF +CF WGLQNLS GQNL+TS+Y WE
Sbjct: 324 IQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEIC 383
Query: 366 FAIVITISGLVFFLYLIGNIQIYLQSKTIRSEEMRLKGQEIEQWMGFRKLSRDLQQKLRN 425
FA+ I+I+GLV F +LIGN+Q YLQS T R EEMR+K ++ EQWM R L +L++++R
Sbjct: 384 FAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRR 443
Query: 426 YRQYVWRETKGVDVENLLNNLPSDLKRNIKSXXXXXXXXNVPLFQNLDAKTLDDICSYLK 485
Y QY W+ET+GVD ENLL+NLP DL+R+IK VP+F+ +D + LD +C L+
Sbjct: 444 YEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQ 503
Query: 486 PVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWA 545
PVLY EES+IV EGD +D MLF+MRGKL + T GGR F + YL AGD+ GEEL++WA
Sbjct: 504 PVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWA 563
Query: 546 LDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFRVYSHQWR 605
LDP+SS LPIS+RTVRA EVEAF L +D+L+ V S+ RRL KQL H FR YS QW+
Sbjct: 564 LDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQF-RRLHSKQLRHTFRYYSQQWK 622
Query: 606 TWAACSIQAAWRRYKRRNLEEFLNAEENRLQGEWAAGG-GITSSLGATIYPSRFAAHALL 664
TWAAC IQAAWRRY ++ LEE L EENRLQ A G + SLGATIY SRFAA+ L
Sbjct: 623 TWAACFIQAAWRRYIKKKLEESLKEEENRLQDALAKEACGSSPSLGATIYASRFAANILR 682
Query: 665 AAQSNRS------------LLLQKPAEPDF 682
+ + S +LLQKPAEPDF
Sbjct: 683 TIRRSGSVRKPRMPERMPPMLLQKPAEPDF 712
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| TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039084 CNGC3 "cyclic nucleotide gated channel 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2118816 CNGC17 "cyclic nucleotide-gated channel 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039099 CNGC11 "cyclic nucleotide-gated channels" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O65717 | CNGC1_ARATH | No assigned EC number | 0.55 | 0.6695 | 0.8659 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00006500001 | SubName- Full=Chromosome undetermined scaffold_171, whole genome shotgun sequence; (709 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 926 | |||
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 3e-15 | |
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 2e-12 | |
| smart00100 | 120 | smart00100, cNMP, Cyclic nucleotide-monophosphate | 3e-08 | |
| smart00100 | 120 | smart00100, cNMP, Cyclic nucleotide-monophosphate | 9e-08 | |
| COG0664 | 214 | COG0664, Crp, cAMP-binding proteins - catabolite g | 9e-07 | |
| pfam00027 | 91 | pfam00027, cNMP_binding, Cyclic nucleotide-binding | 3e-06 | |
| PLN02868 | 413 | PLN02868, PLN02868, acyl-CoA thioesterase family p | 2e-05 | |
| pfam00027 | 91 | pfam00027, cNMP_binding, Cyclic nucleotide-binding | 5e-05 | |
| pfam00520 | 194 | pfam00520, Ion_trans, Ion transport protein | 0.001 |
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
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Score = 72.4 bits (178), Expect = 3e-15
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 14/129 (10%)
Query: 698 LFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLG 757
LF LD + L+++ L+ + I R+G P D ++ G ++ G
Sbjct: 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKL-----DEDG 55
Query: 758 GFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASK 817
+ LG GDL GE L + TV A T+ E L D + + +
Sbjct: 56 REQIVGFLGPGDLFGELAL---------LGNGPRSATVRALTDSELLVLPRSDFRRLLQE 106
Query: 818 SRRLRSKLL 826
L +LL
Sbjct: 107 YPELARRLL 115
|
In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115 |
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|178459 PLN02868, PLN02868, acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 926 | |||
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 100.0 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 100.0 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 100.0 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.95 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 99.93 | |
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 99.61 | |
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.56 | |
| KOG3713 | 477 | consensus Voltage-gated K+ channel KCNB/KCNC [Inor | 99.5 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.47 | |
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.45 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 99.43 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.41 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 99.4 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.37 | |
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 99.35 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.34 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.33 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.32 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.3 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 99.29 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.28 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.26 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 99.26 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 99.25 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 99.22 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 99.22 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.22 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 99.21 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.19 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 99.18 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.16 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.16 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.15 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.15 | |
| KOG1545 | 507 | consensus Voltage-gated shaker-like K+ channel KCN | 99.14 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.14 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.04 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.03 | |
| KOG1419 | 654 | consensus Voltage-gated K+ channel KCNQ [Inorganic | 99.01 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.0 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 98.95 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 98.95 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 98.88 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 98.81 | |
| KOG1420 | 1103 | consensus Ca2+-activated K+ channel Slowpoke, alph | 98.7 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 98.66 | |
| KOG4390 | 632 | consensus Voltage-gated A-type K+ channel KCND [In | 98.48 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 98.41 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 98.05 | |
| PF08412 | 77 | Ion_trans_N: Ion transport protein N-terminal; Int | 97.87 | |
| PF01007 | 336 | IRK: Inward rectifier potassium channel; InterPro: | 97.82 | |
| KOG3684 | 489 | consensus Ca2+-activated K+ channel proteins (inte | 97.81 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 97.01 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 96.84 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 96.73 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 96.62 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 96.38 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 96.17 | |
| KOG2302 | 1956 | consensus T-type voltage-gated Ca2+ channel, pore- | 96.01 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 95.37 | |
| KOG3827 | 400 | consensus Inward rectifier K+ channel [Inorganic i | 95.28 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 94.43 | |
| PLN03223 | 1634 | Polycystin cation channel protein; Provisional | 94.06 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 91.06 | |
| KOG3193 | 1087 | consensus K+ channel subunit [Inorganic ion transp | 89.12 | |
| KOG2301 | 1592 | consensus Voltage-gated Ca2+ channels, alpha1 subu | 82.82 |
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-104 Score=919.30 Aligned_cols=571 Identities=40% Similarity=0.671 Sum_probs=492.7
Q ss_pred cccceeeCCCCcc---hHHHHHHHHHHHHhhccceeeeccccCccccccccccccchHHHHHHHHHHHHHHHHHhhhcee
Q 002414 67 LYLKIVLSPHGPL---WNWIFLISCLIAISLDPLFLYIPVISDEKKCLRLDNKLGTAAIFLRSFLDFFHIIYVIFRLRTK 143 (926)
Q Consensus 67 ~~~~~ii~P~s~~---Wd~~~~i~~i~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~iDi~l~f~t~ 143 (926)
+...+||+|+|+| ||++++++|+|+++++|++++|+..++...| .|..+...+.+++.++|+||++||++|||||
T Consensus 64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frta 141 (727)
T KOG0498|consen 64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTA 141 (727)
T ss_pred cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEE
Confidence 3337899999999 9999999999999999999999999999999 8889999999999999999999999999999
Q ss_pred EecCCCCCCCCeEeccHHHHHHHHhhhhhhhHHHhhccHhHHHhhhhhcccCCcchhhc-hhhhHHHHHHHHHHHHHhhh
Q 002414 144 SFAPCWEYPQRSLNEYAQEITRKYLLFFLPIDLLAILPLPQVVVSVIIQTTRGSKVLSG-LKLLKFFVIFQYVPRLIRIY 222 (926)
Q Consensus 144 y~~~~~~~~~g~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~-~~llr~~~l~~yl~rllri~ 222 (926)
|+++++ -++|.||++||+||+++||++|++|++|+++++.+.++ ++..... ...+..+.+++||+||.|++
T Consensus 142 yv~~~s----~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~----~~~~~~~~~~~l~~il~~~rL~Rl~Rv~ 213 (727)
T KOG0498|consen 142 YVDPSS----YELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI----GSTSLALESTILVGILLLQRLPRLRRVI 213 (727)
T ss_pred EECCCC----ceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee----cccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999974 37999999999999999999999999999999988765 1122222 22455566677799999999
Q ss_pred hhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHhhhcccCCCCcccccccCCCCCCccccc
Q 002414 223 PLFTNVTRTSCKLDESKFFKAAFNLLLYMVASHVFGALWYFFAIVREVACWKSACINHTGCSHASFYCHDTAGNNTFVKD 302 (926)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~i~~ll~~~l~~H~~aC~w~~i~~~~~~~~w~~~~~~~~~c~~~y~~~~~~~~~~sWi~~ 302 (926)
++++.+++..++..+++|++.+.++++|||++||.||+||++|+++...||.++ +|+..
T Consensus 214 ~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~---------------------tw~~~ 272 (727)
T KOG0498|consen 214 PLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA---------------------TWLGS 272 (727)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc---------------------ccccc
Confidence 999999999999999999997788889999999999999999999999998754 34433
Q ss_pred cCCCCCCCCCCCcchhhHhhhhcCccccCChhhHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHH
Q 002414 303 FCPTKPQNTSIFDFGIFQDALQSGIVEVTDFPQKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLI 382 (926)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~ii 382 (926)
.+...++.+..|+||+|. ++.+|++|+||+++||||+|||+++|+|..|++|+|++|++|+++||++|
T Consensus 273 l~~~~~~~~~~~~fg~~s------------~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lI 340 (727)
T KOG0498|consen 273 LGRLLSCYNLSFTFGIYS------------LALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLI 340 (727)
T ss_pred cccccccCcccccccchh------------HHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHH
Confidence 211111223336777654 45699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhcCChhHHHHHHHHHHHHH
Q 002414 383 GNIQIYLQSKTIRSEEMRLKGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSELGLEL 462 (926)
Q Consensus 383 g~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~ 462 (926)
|||++++|+++.+.++|+.|++++++||++++||++||+||++|++|+|+.++|+||+++|++||++||+||.+|+|.++
T Consensus 341 GNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~l 420 (727)
T KOG0498|consen 341 GNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDL 420 (727)
T ss_pred hhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhh
Q 002414 463 LLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELI 542 (926)
Q Consensus 463 L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~l 542 (926)
++++|+|+++|++++.+||.+++++.|+||++|++|||+.++||||.+|.+++.+.+|
T Consensus 421 v~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~---------------------- 478 (727)
T KOG0498|consen 421 VRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDG---------------------- 478 (727)
T ss_pred HhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccC----------------------
Confidence 9999999999999999999999998888888888888888888888888877654332
Q ss_pred hhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHH
Q 002414 543 SWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFRVYSHQWRTWAACSIQAAWRRYKRR 622 (926)
Q Consensus 543 l~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f~~~s~~~~~~~~~~~q~~~~~~~~~ 622 (926)
T Consensus 479 -------------------------------------------------------------------------------- 478 (727)
T KOG0498|consen 479 -------------------------------------------------------------------------------- 478 (727)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhhhhhhhcCCCCCCCcccccccchHHHHHHHHHHhcccccCCCCCCcchhHHHHHhhhhccCCccccCC
Q 002414 623 NLEEFLNAEENRLQGEWAAGGGITSSLGATIYPSRFAAHALLAAQSNRSLLLQKPAEPDFRLAFRKMLMTDFKMPLFQSL 702 (926)
Q Consensus 623 ~~~~~l~~~e~r~~~~~~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~kp~~pd~~~~i~~~L~~~l~~plF~~l 702 (926)
T Consensus 479 -------------------------------------------------------------------------------- 478 (727)
T KOG0498|consen 479 -------------------------------------------------------------------------------- 478 (727)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCC
Q 002414 703 DAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDP 782 (926)
Q Consensus 703 ~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~ 782 (926)
|++.+.+.|+|||+|||++++|+++
T Consensus 479 ------------------------------------------------------g~~~~~~~L~~Gd~~GeEl~~~~~~- 503 (727)
T KOG0498|consen 479 ------------------------------------------------------GGFFVVAILGPGDFFGEELLTWCLD- 503 (727)
T ss_pred ------------------------------------------------------CceEEEEEecCCCccchHHHHHHhc-
Confidence 3444567788888888888888854
Q ss_pred CCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002414 783 QSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYSQQWRTWAACSIQAAWSQYKLQKLQREKE 862 (926)
Q Consensus 783 ~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~r~~~~~~~~~~~ 862 (926)
. |+++||+|+|.|++++|+++||+++++++|++++++++|++|+||++||+||+|+||++|+||++|+...+..
T Consensus 504 -----~-p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~~l~ 577 (727)
T KOG0498|consen 504 -----L-PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEEELA 577 (727)
T ss_pred -----C-CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccchhh
Confidence 2 4599999999999999999999999999999999999999999999999999999999999999999754443
Q ss_pred hhhhhhHHHhhcCCCCCCchhHHHHHhhhhhhccCcchh-hhccccCCCCCCCCCCCCCCCCc
Q 002414 863 NRVQLQDTLAKAGGSSPSSEATLFVSRLFATDAPRSGAR-KTRLLEKVPAVPNLKPVEPSTAE 924 (926)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 924 (926)
++.........+.+++..++++.+|++ +++|..++... ..+.......+..+||.||||.+
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~ 639 (727)
T KOG0498|consen 578 LEEEESAIRGDDRGSKSLLRAGILASR-FAANGRPPLHTAASRGSSDCALLLLQKPADPDFSD 639 (727)
T ss_pred hhcchhhhccccccchhhhhccccccc-ccccCCCccccccccCccccccccCCCCCCCCccc
Confidence 332222222356677788999999999 79998875432 22333334455678999999853
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels | Back alignment and domain information |
|---|
| >PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PLN03223 Polycystin cation channel protein; Provisional | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 926 | ||||
| 1wgp_A | 137 | Solution Structure Of The Cnmp-Binding Domain From | 2e-31 | ||
| 1wgp_A | 137 | Solution Structure Of The Cnmp-Binding Domain From | 3e-31 | ||
| 3u0z_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 4e-09 | ||
| 3u10_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 3e-08 | ||
| 3etq_A | 204 | X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 | 3e-08 | ||
| 3bpz_A | 202 | Hcn2-I 443-460 E502k In The Presence Of Camp Length | 3e-08 | ||
| 1q3e_A | 207 | Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | 3e-08 | ||
| 3ffq_A | 202 | Hcn2i 443-640 Apo-State Length = 202 | 4e-08 | ||
| 2q0a_A | 200 | Structure And Rearrangements In The Carboxy-Termina | 4e-08 | ||
| 3u11_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 3e-07 | ||
| 4hbn_A | 205 | Crystal Structure Of The Human Hcn4 Channel C-termi | 4e-07 | ||
| 3otf_A | 220 | Structural Basis For The Camp-Dependent Gating In H | 4e-07 | ||
| 1q43_A | 207 | Hcn2i 443-640 In The Presence Of Camp, Selenomethio | 6e-06 |
| >pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 | Back alignment and structure |
|
| >pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 | Back alignment and structure |
| >pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204 | Back alignment and structure |
| >pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202 | Back alignment and structure |
| >pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | Back alignment and structure |
| >pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202 | Back alignment and structure |
| >pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200 | Back alignment and structure |
| >pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205 | Back alignment and structure |
| >pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human Hcn4 Channel Length = 220 | Back alignment and structure |
| >pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine Derivative Length = 207 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 9e-48
Identities = 42/213 (19%), Positives = 82/213 (38%), Gaps = 18/213 (8%)
Query: 389 LQSKTIRSEEMRLKGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPS 448
Q R + ++++ ++ +L + L Q++ Q W G+DV LL + P
Sbjct: 4 DQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPD 63
Query: 449 DLKRNIKSELGLELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFV 508
+L+ +I L E LL +PLF++ L + +K A ++ +GD + + FV
Sbjct: 64 ELRADIAMHLNKE-LLQLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFV 122
Query: 509 MRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVE 568
G + L GD G + ++ ++ V+A T +
Sbjct: 123 CSGSMEVLKDNTVLAI------LGKGDLIGSDSLTKEQV-------IKTNANVKALTYCD 169
Query: 569 AFVLMSDNLRAVTS---ELSRRLCYKQLHHAFR 598
+ LR V E +++ ++ H
Sbjct: 170 LQYISLKGLREVLRLYPEYAQKFV-SEIQHDLT 201
|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 | Back alignment and structure |
|---|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 | Back alignment and structure |
|---|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207 | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Length = 238 | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 926 | |||
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 100.0 | |
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 100.0 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.97 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.97 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.97 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.97 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 99.96 | |
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 99.96 | |
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 99.96 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.95 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.94 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 99.87 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 99.75 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.73 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.73 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.72 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.68 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.68 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.67 | |
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 99.67 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.67 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.67 | |
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 99.67 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.65 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.64 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.64 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.64 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.64 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.64 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 99.64 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.64 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.64 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.63 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.63 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.63 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.62 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.62 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.62 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.61 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.61 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.6 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.6 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.6 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.59 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.59 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.59 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.57 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.56 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.55 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.55 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.55 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.55 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.54 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.54 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.54 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.53 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.53 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 99.52 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.52 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.52 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.52 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.51 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.5 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.5 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.5 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.49 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.49 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.49 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.48 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.47 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.45 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.45 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.45 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.44 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.44 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 99.43 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.42 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 99.42 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.41 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.4 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.4 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 99.4 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.39 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.38 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.37 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.33 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.3 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 99.25 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 99.24 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.21 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.2 | |
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 99.18 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.18 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.16 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 99.15 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 99.09 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 99.07 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 99.04 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 99.01 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 98.98 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 98.91 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 98.83 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 98.8 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 98.73 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 98.66 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.62 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 98.47 | |
| 3sya_A | 340 | G protein-activated inward rectifier potassium CH; | 98.41 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 98.3 | |
| 3spc_A | 343 | Inward-rectifier K+ channel KIR2.2; PIP, membrane | 98.29 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.28 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.25 | |
| 4dxw_A | 229 | Navrh, ION transport protein; tetrameric, voltage- | 98.16 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.13 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.96 | |
| 2kyh_A | 147 | KVAP, voltage-gated potassium channel; ION channel | 97.47 | |
| 1ors_C | 132 | Potassium channel; voltage-dependent, voltage sens | 97.36 | |
| 2l53_B | 31 | CAM, voltage-gated sodium channel type V alpha iso | 92.81 | |
| 2kxw_B | 27 | Sodium channel protein type 2 subunit alpha; actio | 91.99 | |
| 2qnk_A | 286 | 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol | 87.02 |
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=294.26 Aligned_cols=267 Identities=22% Similarity=0.328 Sum_probs=231.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEee
Q 002414 440 ENLLNNLPSDLKRNIKSELGLELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMV 519 (926)
Q Consensus 440 ~~ll~~Lp~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~ 519 (926)
.....++|+..|.+...++..++++++++|.+++++.+..|+..++.+.|++|++|+++||+++.+|||++|.|++.. +
T Consensus 18 ~~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~-~ 96 (299)
T 3shr_A 18 RGSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-E 96 (299)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE-T
T ss_pred ccccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE-C
Confidence 345668999999999999999999999999999999999999999999999999999999999999999999999854 3
Q ss_pred CCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHHHh
Q 002414 520 GGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFRV 599 (926)
Q Consensus 520 ~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f~~ 599 (926)
| . .+..+.+|++|||.+++. .. +|++||+|.++|+++.|++++|..++..+ |..+.
T Consensus 97 g-~----~~~~~~~G~~fGe~~ll~---~~------~~~~tv~a~~~~~l~~i~~~~~~~i~~~~------~~~~~---- 152 (299)
T 3shr_A 97 G-V----KLCTMGPGKVFGELAILY---NC------TRTATVKTLVNVKLWAIDRQCFQTIMMRT------GLIKH---- 152 (299)
T ss_dssp T-E----EEEEECTTCEESCSGGGT---TT------BCCSEEEESSCEEEEEECHHHHHHHHHHH------HHHHH----
T ss_pred C-E----EEEEeCCCCeeeHhHHhc---CC------CCCcEEEEcCCeEEEEEcHHHHHHHhhHh------HHHHH----
Confidence 3 2 368999999999998852 22 38999999999999999999999999988 32111
Q ss_pred hchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCcccccccchHHHHHHHHHHhcccccCCCCCC
Q 002414 600 YSHQWRTWAACSIQAAWRRYKRRNLEEFLNAEENRLQGEWAAGGGITSSLGATIYPSRFAAHALLAAQSNRSLLLQKPAE 679 (926)
Q Consensus 600 ~s~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~e~r~~~~~~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~kp~~ 679 (926)
T Consensus 153 -------------------------------------------------------------------------------- 152 (299)
T 3shr_A 153 -------------------------------------------------------------------------------- 152 (299)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhHHHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCe
Q 002414 680 PDFRLAFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGF 759 (926)
Q Consensus 680 pd~~~~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~ 759 (926)
..+..++. ++|+|..++++.+..++..++.+.|++|++|+++||+++.+|+|++|.|+++..+. .+|++
T Consensus 153 ----~~~~~~l~---~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~----~~g~~ 221 (299)
T 3shr_A 153 ----TEYMEFLK---SVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDS----PNEDP 221 (299)
T ss_dssp ----HHHHHHHT---TSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCS----SSCCC
T ss_pred ----HHHHHHHh---hCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecC----CCCcc
Confidence 02334566 89999999999999999999999999999999999999999999999999998752 14788
Q ss_pred EEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHH
Q 002414 760 FNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYR 831 (926)
Q Consensus 760 ~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r 831 (926)
..+..+++||+|||..+. .. .|+++||+|.++|+++.|++++|..++.++|.+..++++...+
T Consensus 222 ~~~~~l~~G~~fGe~~ll---~~------~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~ 284 (299)
T 3shr_A 222 VFLRTLGKGDWFGEKALQ---GE------DVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEA 284 (299)
T ss_dssp EEEEEEETTCEECGGGGS---SS------EECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred eEEEEcCCCCEeChHHHh---CC------CCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhh
Confidence 999999999999999765 22 2789999999999999999999999999999888777766544
|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* | Back alignment and structure |
|---|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} | Back alignment and structure |
|---|
| >1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 926 | ||||
| d1wgpa_ | 137 | b.82.3.2 (A:) Probable cyclic nucleotide-gated ion | 5e-19 | |
| d1wgpa_ | 137 | b.82.3.2 (A:) Probable cyclic nucleotide-gated ion | 3e-17 | |
| d1q3ea_ | 193 | b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu | 6e-13 | |
| d1ne6a2 | 132 | b.82.3.2 (A:245-376) Regulatory subunit of Protein | 2e-09 | |
| d1ne6a2 | 132 | b.82.3.2 (A:245-376) Regulatory subunit of Protein | 4e-09 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 3e-08 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 1e-07 | |
| d1cx4a1 | 136 | b.82.3.2 (A:130-265) Regulatory subunit of Protein | 2e-07 | |
| d1cx4a1 | 136 | b.82.3.2 (A:130-265) Regulatory subunit of Protein | 2e-06 | |
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 3e-07 | |
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 3e-06 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 4e-07 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 2e-06 | |
| d1ne6a1 | 136 | b.82.3.2 (A:109-244) Regulatory subunit of Protein | 6e-07 | |
| d1ne6a1 | 136 | b.82.3.2 (A:109-244) Regulatory subunit of Protein | 3e-06 | |
| d1o7fa3 | 124 | b.82.3.2 (A:322-445) Regulatory domain of Epac2, d | 8e-05 | |
| d2gaua2 | 142 | b.82.3.2 (A:10-151) Transcriptional regulator PG03 | 7e-04 | |
| d2gaua2 | 142 | b.82.3.2 (A:10-151) Transcriptional regulator PG03 | 0.002 | |
| d2oz6a2 | 134 | b.82.3.2 (A:9-142) Cyclic AMP receptor-like protei | 0.002 |
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: Probable cyclic nucleotide-gated ion channel 6 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 82.3 bits (202), Expect = 5e-19
Identities = 63/126 (50%), Positives = 87/126 (69%)
Query: 461 ELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVG 520
+ VPLF+N+D + LD IC LKP L+ E+S++V EGD ++ MLF++RG+L S T G
Sbjct: 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDG 65
Query: 521 GRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAV 580
GR F + L GD+ G+EL++WALDP S LP S+RTV+A TEVEAF L++D L+ V
Sbjct: 66 GRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 125
Query: 581 TSELSR 586
S+ R
Sbjct: 126 ASQFRR 131
|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 | Back information, alignment and structure |
|---|
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142 | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142 | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Length = 134 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 926 | |||
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 99.96 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.79 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.79 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.74 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.73 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.72 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.71 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.7 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.68 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.67 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.67 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.66 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.65 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.65 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.65 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.64 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.64 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.63 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.62 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.62 | |
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 99.62 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.62 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.62 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.61 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.59 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.53 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.52 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.49 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.47 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.46 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.46 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.4 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.39 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 99.27 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.21 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 99.11 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 98.95 | |
| d1lnqa2 | 80 | Potassium channel-related protein MthK {Archaeon M | 98.66 | |
| d1orsc_ | 132 | Potassium channel KVAP {Archaeon Aeropyrum pernix | 97.1 | |
| d2h8pc1 | 57 | Potassium channel protein {Streptomyces coelicolor | 95.93 | |
| d2bgca2 | 131 | Listeriolysin regulatory protein PrfA, N-terminal | 83.78 | |
| d2bgca2 | 131 | Listeriolysin regulatory protein PrfA, N-terminal | 80.59 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 80.43 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=4.8e-28 Score=245.42 Aligned_cols=184 Identities=27% Similarity=0.381 Sum_probs=167.5
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhcCChhHHHHHHHHHHHHHhcCCcccccC
Q 002414 393 TIRSEEMRLKGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSELGLELLLNVPLFQNL 472 (926)
Q Consensus 393 ~~~~~~~~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~L~~i~lF~~l 472 (926)
|+..++|+++++.+++||+.+++|++|+.||++||+|.|+. ++.+++++++.||+.|+.++..+++.++|+++|+|+++
T Consensus 1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~ 79 (193)
T d1q3ea_ 1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANA 79 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTS
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhh
Confidence 46788999999999999999999999999999999999975 78899999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCCCCC
Q 002414 473 DAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPNSSH 552 (926)
Q Consensus 473 ~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~ 552 (926)
++.++..|+..+++..|.||++|+++||+++.+|||.+|.|+++..++. +..+++|++|||.+++. ..
T Consensus 80 ~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~~------~~~l~~G~~fGe~~~~~---~~--- 147 (193)
T d1q3ea_ 80 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK------EMKLSDGSYFGEICLLT---RG--- 147 (193)
T ss_dssp CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CCC------EEEECTTCEECHHHHHH---CS---
T ss_pred hHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCCcc------eeeeccceeeeeeeccC---CC---
Confidence 9999999999999999999999999999999999999999999865433 36899999999999863 11
Q ss_pred CCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHHH
Q 002414 553 YLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFR 598 (926)
Q Consensus 553 ~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f~ 598 (926)
+++++++|.++|+++.|++++|.+++.++ |.+.+.+.
T Consensus 148 ---~~~~~~~a~~~~~l~~l~~~~f~~ll~~~------p~~~~~~~ 184 (193)
T d1q3ea_ 148 ---RRTASVRADTYCRLYSLSVDNFNEVLEEY------PMMRRAFE 184 (193)
T ss_dssp ---BCSSEEEESSCEEEEEEEHHHHHHHHHHS------GGGHHHHH
T ss_pred ---cccccceecCceEEEEEeHHHHHHHHHHC------HHHHHHHH
Confidence 38899999999999999999999999999 65555443
|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|