Citrus Sinensis ID: 002419

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-----
MGWFRASSGVAKLAIRRTLSQGCSYTTRAQVFPSRSRCFHSTVLKSKAQSAPVPRPVPLSRLTDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNFGELILGFIW
cccccccccccHHHHcccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEccccccccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHcccHHHHHHcccccccccccccccccccccccccccccEEEcccccEEEEEEEcccccccccccEEHHHHHHHHHHccccccccEEEEEEEHHHHccccHHHHHHHccccccccccccEEEEEEccccccccccccccccccHHHHHHHHcccEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccEEEEcccccccccccccccEEEEcccccEEEcccccccccccccEEEEcccHHHHHHHHHcccccccccccEEEEcccccccccccEEEEEcccccHHHHHccccccEEEcccccccccccccccHHHHHHHcccccccccccccHHHHHccccccEEEEEcccHHHHHHHHHHHcccccccccEEEccccccccccccccHHccccccccccccccccccEEccccccccccccccccEEEEEccHHHHHHHHHHHHcccccHHHHHccc
ccHEEccHHHHHHHHHccccccccHHHHccccccHcccHHHHHHHHHHHcccccccccHHHcccHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHccccHHHcccEEEccccEcccccHcccccccHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHcccHHHHHHHHccccccHHccccccccccEEEccccccccccccccEEEEEEEEccccEEEEccEEEEEEEEEEcccccccccEEEEEEEEccHHHHcccEEHHHccccccccccccEEEEEEEEccccEccccccccccccccHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEEccccccccccccccHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHcHccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccEEEEccccccccEcccEEEEEEccccccEEEHHHcccccccccEEEEcccccHHHHHHHHHcccccccccEEEEEHccccHccccEEEEEHHHccHHHHHHHHccHEEEccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHccEEEccccHHHHHHHHHHHHHHcccccEEEEccHHHcccHHHHccHHHHHccccccccccccccccEccccccHHcccHHHcEEEEEEccHEHHHHHHHHHHHHcccEEEEEccc
MGWFRASSGVAKLAIRRTLsqgcsyttraqvfpsrsrcfhstvlkskaqsapvprpvplsrltdnfldgtSSVYLEELQRsweadpnsvdESWQNFFRNFVGqaatspgisgqTIQESMRLLLLVRAYQVnghmkakldplgleereipddldpafygfteadldrEFFLGVWSmagflsenrpvQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWlrdkietptpmqynRQRREVILDRLVWSTQFENFLATKWTtakrfgleggetlIPGMKEMFDRAADLGVEsivigmphrgrlnvlgnvvrkpLRQIFsefsggtrpvdevglytgtgdvkyhlgtsydrptrggkrihlslvanpshleavdpvvigKTRAkqyysndmdrtKNMAVLIHgdgsfagqGVVYETLHlsalpnysiggtIHIVVNNqvafttdpmsgrssqyCTDVAKaldapifhvngddmEAVAHVCELAAEWRQTFHSDVVVDLVCYrrfghneidepsftqpkmykiirshpsslEIYQNKLLECQHVTQEDINKIQEKVNRILSEEfvaskdyvpnrrDWLSAYwsgfkspeqlsrirntgvkpEILKNVGKAIttlpenfkphrgvKKVYELRAQMIETGEGIDWALGEALAFATLLVEgnhvrlsgqdvergtfshrhsvlhdqetgeqycpldhvmmnqdaemftvsnsslsefgVLGFElgysmenpnsLVMWEAQfgdfangaQVIFDQFVNSGESKWLRQSGLVvmlphgydgqgpehsSARLERFLQmsddnpyvipemdSTLRTQIQECNWqivnvttpanYFHVLRRQIHREfrkplvvmspknllrhkecksnlsefddvqghpgfdkqGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNFGELILGFIW
mgwfrassgVAKLAIRRTLSQGCSyttraqvfpsrsrCFHSTvlkskaqsapvprpvplsrltdnfLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIEtptpmqynrqrREVILDRLVWSTQFENflatkwttakrfGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIfsefsggtrpvdeVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSlvanpshleavdpvvigKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGhneidepsftqpkMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEefvaskdyvpnrRDWLSAYWsgfkspeqlsrirntgvkpeILKNVGKaittlpenfkphrgvKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREfrkplvvmspknlLRHKECKSNlsefddvqghpgfdkQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNFGELILGFIW
MGWFRASSGVAKLAIRRTLSQGCSYTTRAQVFPSRSRCFHSTVLKSKAQSAPVPRPVPLSRLTDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNFGELILGFIW
********GVAKLAIRRTLSQGCSYTTRAQVFPSRSRCFHSTV*******************TDNFLDGTSSVYLEELQRSWEA***SVDESWQNFFRNFVGQAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGY**********************PYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLR****************************************EEGIRRLILCSGKVSSAVCVALYFFYNFGELILGFIW
*************************************************************LTDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIETPT***YNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVA**D************WS*FK***Q**RIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNFGELILGFIW
*********VAKLAIRRTLSQGCSYTTRAQVFPSRSRCFHST***********PRPVPLSRLTDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNFGELILGFIW
**W**ASSGVAKLAIRRTL************************************PVPLSRLTDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQA*****ISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRP******YTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNFGELILGFIW
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGWFRASSGVAKLAIRRTLSQGCSYTTRAQVFPSRSRCFHSTVLKSKAQSAPVPRPVPLSRLTDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNFGELILGFIW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query925 2.2.26 [Sep-21-2011]
Q54JE41013 2-oxoglutarate dehydrogen yes no 0.917 0.838 0.533 0.0
O743781009 2-oxoglutarate dehydrogen yes no 0.894 0.819 0.514 0.0
P209671014 2-oxoglutarate dehydrogen yes no 0.932 0.851 0.474 0.0
Q60HE21023 2-oxoglutarate dehydrogen N/A no 0.929 0.840 0.469 0.0
Q5RCB81023 2-oxoglutarate dehydrogen yes no 0.929 0.840 0.469 0.0
Q022181023 2-oxoglutarate dehydrogen yes no 0.929 0.840 0.469 0.0
Q605971023 2-oxoglutarate dehydrogen yes no 0.930 0.841 0.467 0.0
Q5XI781023 2-oxoglutarate dehydrogen yes no 0.930 0.841 0.467 0.0
Q148N01023 2-oxoglutarate dehydrogen yes no 0.930 0.841 0.465 0.0
Q68EW01018 2-oxoglutarate dehydrogen N/A no 0.881 0.800 0.488 0.0
>sp|Q54JE4|ODO1_DICDI 2-oxoglutarate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=ogdh PE=3 SV=1 Back     alignment and function desciption
 Score =  981 bits (2537), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/889 (53%), Positives = 614/889 (69%), Gaps = 40/889 (4%)

Query: 41  STVLKSKAQSAPVPRPVPLSRLTDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNF 100
           S V +S +    + +P     L+++FLDGTSS Y+E++  +W  DP SV  SW +FF + 
Sbjct: 23  SAVKRSFSTVGGINQPKSRKELSESFLDGTSSTYVEDMFANWVKDPKSVHPSWASFFESS 82

Query: 101 -----VGQAATSPGISGQTI------------------QESMRLLLLVRAYQVNGHMKAK 137
                 G+A  SP   G ++                   +SMRLLLLVRAYQV GH  A 
Sbjct: 83  ERGVPAGEAFMSPPTLGSSVATKATPSTYTSSGSPKQVSDSMRLLLLVRAYQVRGHALAN 142

Query: 138 LDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQ 197
           LDPLGLE +E P + +PA YGFTEAD+DR  F+G   ++GFL+  +P  TLR +L RL++
Sbjct: 143 LDPLGLEVKEEPAEFNPAKYGFTEADMDRPIFVGEGFISGFLTNKQPETTLRQVLKRLKE 202

Query: 198 AYCGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKW 257
            YCG IG EYMHI DRE C+W+RDK ET  P++   + +  IL+RL W+ QFE FL  K+
Sbjct: 203 TYCGDIGIEYMHIQDREMCDWIRDKFETSQPVEIPDKEKIKILERLSWADQFEGFLGLKY 262

Query: 258 TTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSE 317
              +RFGL+G E+LIPGMK M D A + GVESIV+GMPHRGRLNVL NVVRKPL  IF+E
Sbjct: 263 RATRRFGLDGCESLIPGMKAMIDTATEDGVESIVLGMPHRGRLNVLANVVRKPLPAIFNE 322

Query: 318 FSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKT 377
           F+GG   ++  G Y+ TGDVKYHLGTSYDR T  GK++HLSLVANPSHLEAV+P+V GK 
Sbjct: 323 FNGGVISIE--GEYSATGDVKYHLGTSYDRVTSSGKKVHLSLVANPSHLEAVNPLVEGKV 380

Query: 378 RAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAF 437
           RAKQ+YS D ++ K+MAV +HGD S AGQGVVYETLHLS L NYS GGT+HIVVNNQ+ F
Sbjct: 381 RAKQHYSKDTEQKKSMAVQLHGDASVAGQGVVYETLHLSNLDNYSTGGTVHIVVNNQIGF 440

Query: 438 TTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497
           TT+P   RSS+YCTDVAK +D P+FHVNGD++EAV  VC++AAEWRQ F  DV VD+VCY
Sbjct: 441 TTNPKYSRSSKYCTDVAKTIDIPVFHVNGDNVEAVVKVCKIAAEWRQKFKRDVFVDIVCY 500

Query: 498 RRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSE 557
           R+ GHNE D+P FTQP MY  I      +E Y NKL+  + +TQE   +++  ++    +
Sbjct: 501 RKHGHNETDQPKFTQPIMYDKIGKQQPIIEKYSNKLIAEKVITQEQYLQMKNIIHESYEK 560

Query: 558 EFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHR 617
            +     +VPN  DWL + W GFKSP +L     TG+  ++L+ +GK + T P  F+ H 
Sbjct: 561 GYQDGMKHVPNAEDWLESRWEGFKSPIELGNPGRTGIDQDLLQKIGKVLYTEPSGFEVHS 620

Query: 618 GVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHD 677
            +K++ + +  M + G G DWA  EALAF +LL++GNHVRLSGQDVERGTFSHRH+V HD
Sbjct: 621 TIKRLLKEKKDMFDKGTGFDWATAEALAFGSLLLDGNHVRLSGQDVERGTFSHRHAVWHD 680

Query: 678 QETGEQYCPLDHV---MMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFG 734
           Q+T + Y PL  +   +  +DA  F  SNSSLSEF VLGFELGYS+ENP++L++WEAQFG
Sbjct: 681 QKTDQTYAPLTKLATALGKKDAAEFVASNSSLSEFAVLGFELGYSLENPDALILWEAQFG 740

Query: 735 DFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYV 794
           DF+NGAQVI DQF++SGE KW+RQSGL ++LPHGYDG GPEHSS R+ER+LQ+ D +P  
Sbjct: 741 DFSNGAQVIIDQFISSGEQKWMRQSGLTMLLPHGYDGAGPEHSSCRIERYLQLCDSDPNK 800

Query: 795 IPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKS 854
           IP  +   R Q Q CN Q++N +TP NYFH LRRQ+HR+FRKPLV+ +PK LLR+++  S
Sbjct: 801 IPPKEEAERKQSQHCNMQVLNCSTPVNYFHALRRQVHRDFRKPLVIATPKYLLRYEKSFS 860

Query: 855 NLSEFDDVQGHPGFDKQGTRFKRLIKDQ-NEHSDLEEGIRRLILCSGKV 902
              EF +             F RL  +   +  +  E I R++ C+G+V
Sbjct: 861 TAKEFSN-----------DSFTRLYPEAFPDQINKPEKINRIVFCTGQV 898
The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).
Dictyostelium discoideum (taxid: 44689)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 2
>sp|O74378|ODO1_SCHPO 2-oxoglutarate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kgd1 PE=3 SV=1 Back     alignment and function description
>sp|P20967|ODO1_YEAST 2-oxoglutarate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KGD1 PE=1 SV=2 Back     alignment and function description
>sp|Q60HE2|ODO1_MACFA 2-oxoglutarate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=OGDH PE=2 SV=1 Back     alignment and function description
>sp|Q5RCB8|ODO1_PONAB 2-oxoglutarate dehydrogenase, mitochondrial OS=Pongo abelii GN=OGDH PE=2 SV=1 Back     alignment and function description
>sp|Q02218|ODO1_HUMAN 2-oxoglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=OGDH PE=1 SV=3 Back     alignment and function description
>sp|Q60597|ODO1_MOUSE 2-oxoglutarate dehydrogenase, mitochondrial OS=Mus musculus GN=Ogdh PE=1 SV=3 Back     alignment and function description
>sp|Q5XI78|ODO1_RAT 2-oxoglutarate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Ogdh PE=1 SV=1 Back     alignment and function description
>sp|Q148N0|ODO1_BOVIN 2-oxoglutarate dehydrogenase, mitochondrial OS=Bos taurus GN=OGDH PE=2 SV=1 Back     alignment and function description
>sp|Q68EW0|OGDHL_XENLA 2-oxoglutarate dehydrogenase-like, mitochondrial OS=Xenopus laevis GN=ogdhl PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query925
2241095801021 predicted protein [Populus trichocarpa] 0.975 0.883 0.903 0.0
2241009291021 predicted protein [Populus trichocarpa] 0.975 0.883 0.901 0.0
4494599281022 PREDICTED: 2-oxoglutarate dehydrogenase, 0.975 0.882 0.898 0.0
2555751201021 2-oxoglutarate dehydrogenase, putative [ 0.975 0.883 0.894 0.0
4494499701021 PREDICTED: 2-oxoglutarate dehydrogenase, 0.975 0.883 0.886 0.0
4494838891021 PREDICTED: 2-oxoglutarate dehydrogenase, 0.975 0.883 0.885 0.0
70767841009 2-oxoglutarate dehydrogenase, E1 subunit 0.974 0.892 0.870 0.0
306942421017 2-oxoglutarate dehydrogenase, E1 compone 0.974 0.885 0.870 0.0
2978168341017 hypothetical protein ARALYDRAFT_485968 [ 0.974 0.885 0.869 0.0
2977941871025 E1 subunit of 2-oxoglutarate dehydrogena 0.975 0.88 0.872 0.0
>gi|224109580|ref|XP_002315242.1| predicted protein [Populus trichocarpa] gi|222864282|gb|EEF01413.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1742 bits (4512), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 815/902 (90%), Positives = 870/902 (96%)

Query: 1   MGWFRASSGVAKLAIRRTLSQGCSYTTRAQVFPSRSRCFHSTVLKSKAQSAPVPRPVPLS 60
           M WFRA SGVA+LAIRRTLSQG SY TR++V P ++R FHSTV KSKAQ+APVPRPVPLS
Sbjct: 1   MAWFRAGSGVARLAIRRTLSQGGSYATRSRVIPPQNRYFHSTVFKSKAQAAPVPRPVPLS 60

Query: 61  RLTDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQAATSPGISGQTIQESMR 120
           +LTDNFLDGTSSVYLEELQR+WE DPNSVDESW NFF+NFVGQAATSPGISGQTIQESMR
Sbjct: 61  KLTDNFLDGTSSVYLEELQRAWETDPNSVDESWDNFFKNFVGQAATSPGISGQTIQESMR 120

Query: 121 LLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLS 180
           LLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPA YGFT+ADLDREFFLGVW MAGFLS
Sbjct: 121 LLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPALYGFTDADLDREFFLGVWRMAGFLS 180

Query: 181 ENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVIL 240
           ENRPVQTLR+ILTRLEQAYCGSIG+EYMHI+DREKCNWLRDKIETPT MQYNRQRREVIL
Sbjct: 181 ENRPVQTLRAILTRLEQAYCGSIGYEYMHIADREKCNWLRDKIETPTSMQYNRQRREVIL 240

Query: 241 DRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRL 300
           DRL+WSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDR+ADLGVESIVIGMPHRGRL
Sbjct: 241 DRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRSADLGVESIVIGMPHRGRL 300

Query: 301 NVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLV 360
           NVLGNVVRKPLRQIFSEFSGGT+PVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLV
Sbjct: 301 NVLGNVVRKPLRQIFSEFSGGTKPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLV 360

Query: 361 ANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPN 420
           ANPSHLEAVDPVV+GKTRAKQYYSND DRTKNM +LIHGDGSFAGQGVVYETLHLSALPN
Sbjct: 361 ANPSHLEAVDPVVVGKTRAKQYYSNDSDRTKNMGILIHGDGSFAGQGVVYETLHLSALPN 420

Query: 421 YSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAA 480
           Y+ GGTIHIVVNNQVAFTTDP +GRSSQYCTDVAKAL+APIFHVNGDDMEAV HVCELAA
Sbjct: 421 YTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTDVAKALNAPIFHVNGDDMEAVVHVCELAA 480

Query: 481 EWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVT 540
           EWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMY++IR+HPS+LEIY+ KLLE   VT
Sbjct: 481 EWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRNHPSALEIYKKKLLESGQVT 540

Query: 541 QEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILK 600
           +EDI++IQEKV  IL+EEF+ASKDYVP RRDWLS++W+GFKSPEQLSR+RNTGVKPEILK
Sbjct: 541 EEDISRIQEKVLSILNEEFLASKDYVPKRRDWLSSHWTGFKSPEQLSRVRNTGVKPEILK 600

Query: 601 NVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSG 660
           NVGKAITT PENFKPHR VKKVYE R QMIETGEGIDWA+GEALAFATLLVEGNHVRLSG
Sbjct: 601 NVGKAITTFPENFKPHRAVKKVYEQRLQMIETGEGIDWAVGEALAFATLLVEGNHVRLSG 660

Query: 661 QDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSM 720
           QDVERGTFSHRHSV+HDQETGE+YCPLDHV+MNQD EMFTVSNSSLSEFGVLGFELGYSM
Sbjct: 661 QDVERGTFSHRHSVVHDQETGEKYCPLDHVVMNQDEEMFTVSNSSLSEFGVLGFELGYSM 720

Query: 721 ENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSAR 780
           E+PNSLV+WEAQFGDFANGAQVIFDQF++SGESKWLRQ+GLV++LPHGYDGQGPEHSSAR
Sbjct: 721 ESPNSLVIWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVLLLPHGYDGQGPEHSSAR 780

Query: 781 LERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVV 840
           LERFLQMSDDNPYVIPEM+ TLR QIQECNWQ+VNVTTPANYFHVLRRQIHR+FRKPLVV
Sbjct: 781 LERFLQMSDDNPYVIPEMEPTLRKQIQECNWQVVNVTTPANYFHVLRRQIHRDFRKPLVV 840

Query: 841 MSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSG 900
           ++PKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKD+N+HSDLEEGIRRL+LCSG
Sbjct: 841 IAPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDRNDHSDLEEGIRRLVLCSG 900

Query: 901 KV 902
           K+
Sbjct: 901 KI 902

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224100929|ref|XP_002312072.1| predicted protein [Populus trichocarpa] gi|222851892|gb|EEE89439.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449459928|ref|XP_004147698.1| PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like [Cucumis sativus] gi|449518101|ref|XP_004166082.1| PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255575120|ref|XP_002528465.1| 2-oxoglutarate dehydrogenase, putative [Ricinus communis] gi|223532141|gb|EEF33948.1| 2-oxoglutarate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449449970|ref|XP_004142737.1| PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449483889|ref|XP_004156723.1| PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|7076784|emb|CAB75899.1| 2-oxoglutarate dehydrogenase, E1 subunit-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30694242|ref|NP_191101.2| 2-oxoglutarate dehydrogenase, E1 component [Arabidopsis thaliana] gi|332645860|gb|AEE79381.1| 2-oxoglutarate dehydrogenase, E1 component [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297816834|ref|XP_002876300.1| hypothetical protein ARALYDRAFT_485968 [Arabidopsis lyrata subsp. lyrata] gi|297322138|gb|EFH52559.1| hypothetical protein ARALYDRAFT_485968 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297794187|ref|XP_002864978.1| E1 subunit of 2-oxoglutarate dehydrogenase [Arabidopsis lyrata subsp. lyrata] gi|297310813|gb|EFH41237.1| E1 subunit of 2-oxoglutarate dehydrogenase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query925
TAIR|locus:20999811017 AT3G55410 [Arabidopsis thalian 0.974 0.885 0.870 0.0
TAIR|locus:21700001025 AT5G65750 [Arabidopsis thalian 0.975 0.88 0.871 0.0
DICTYBASE|DDB_G02881271013 ogdh "2-oxoglutarate dehydroge 0.847 0.773 0.562 1.1e-258
ASPGD|ASPL00000299041048 kgdA [Emericella nidulans (tax 0.843 0.744 0.548 5.1e-245
POMBASE|SPBC3H7.03c1009 SPBC3H7.03c "2-oxoglutarate de 0.834 0.765 0.543 6.8e-241
UNIPROTKB|G4NAT31008 MGG_12767 "2-oxoglutarate dehy 0.847 0.777 0.532 1.4e-240
SGD|S0000013871014 KGD1 "Subunit of the mitochond 0.871 0.794 0.505 1.7e-233
CGD|CAL0006070996 KGD1 [Candida albicans (taxid: 0.846 0.786 0.517 1.4e-231
UNIPROTKB|F1PK40 1021 OGDHL "Uncharacterized protein 0.837 0.759 0.509 3e-227
UNIPROTKB|E9PCR71038 OGDH "2-oxoglutarate dehydroge 0.783 0.698 0.519 1.3e-222
TAIR|locus:2099981 AT3G55410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4265 (1506.4 bits), Expect = 0., P = 0.
 Identities = 785/902 (87%), Positives = 855/902 (94%)

Query:     1 MGWFRASSGVAKLAIRRTLSQGCSYTTRAQVFPSRSRCFHSTVLKSKAQSAPVPRPVPLS 60
             M WFRA S V KLA+RR L+QG SY TR +  PS++R FHST+ + KAQSAPVPR VPLS
Sbjct:     1 MVWFRAGSSVTKLAVRRILNQGASYATRTRSIPSQTRSFHSTICRPKAQSAPVPRAVPLS 60

Query:    61 RLTDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQAATSPGISGQTIQESMR 120
             +LTD+FLDGTSSVYLEELQR+WEADPNSVDESW NFFRNFVGQAATSPGISGQTIQESMR
Sbjct:    61 KLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQAATSPGISGQTIQESMR 120

Query:   121 LLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLS 180
             LLLLVRAYQVNGHMKAKLDPLGLE+REIP+DLD A YGFTEADLDREFFLGVW M+GF+S
Sbjct:   121 LLLLVRAYQVNGHMKAKLDPLGLEQREIPEDLDLALYGFTEADLDREFFLGVWQMSGFMS 180

Query:   181 ENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVIL 240
             ENRPVQTLRSILTRLEQAYCG+IGFEYMHI+DR+KCNWLR+KIETPTP +YNR+RREVIL
Sbjct:   181 ENRPVQTLRSILTRLEQAYCGNIGFEYMHIADRDKCNWLREKIETPTPWRYNRERREVIL 240

Query:   241 DRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRL 300
             DRL WSTQFENFLATKWTTAKRFGLEGGE+LIPGMKEMFDRAADLGVESIVIGM HRGRL
Sbjct:   241 DRLAWSTQFENFLATKWTTAKRFGLEGGESLIPGMKEMFDRAADLGVESIVIGMSHRGRL 300

Query:   301 NVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLV 360
             NVLGNVVRKPLRQIFSEFSGG RPVDEVG YTGTGDVKYHLGTSYDRPTRGGK+IHLSLV
Sbjct:   301 NVLGNVVRKPLRQIFSEFSGGIRPVDEVG-YTGTGDVKYHLGTSYDRPTRGGKKIHLSLV 359

Query:   361 ANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPN 420
             ANPSHLEA D VV+GKTRAKQYYSND+DRTKN+ +LIHGDGSFAGQGVVYETLHLSALPN
Sbjct:   360 ANPSHLEAADSVVVGKTRAKQYYSNDLDRTKNLGILIHGDGSFAGQGVVYETLHLSALPN 419

Query:   421 YSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAA 480
             Y+ GGTIHIVVNNQVAFTTDP +GRSSQYCTDVAKAL APIFHVNGDD+EAV H CELAA
Sbjct:   420 YTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTDVAKALSAPIFHVNGDDVEAVVHACELAA 479

Query:   481 EWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVT 540
             EWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYK+I++HPS+L+IY  KLLEC  V+
Sbjct:   480 EWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKVIKNHPSTLQIYHKKLLECGEVS 539

Query:   541 QEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILK 600
             Q+DI++IQEKVN IL+EEFVASKDY+P +RDWLS  W+GFKSPEQ+SR+RNTGVKPEILK
Sbjct:   540 QQDIDRIQEKVNTILNEEFVASKDYLPKKRDWLSTNWAGFKSPEQISRVRNTGVKPEILK 599

Query:   601 NVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSG 660
              VGKAI++LPENFKPHR VKKVYE RAQMIE+GEG+DWAL EALAFATL+VEGNHVRLSG
Sbjct:   600 TVGKAISSLPENFKPHRAVKKVYEQRAQMIESGEGVDWALAEALAFATLVVEGNHVRLSG 659

Query:   661 QDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSM 720
             QDVERGTFSHRHSVLHDQETGE+YCPLDH++MNQD EMFTVSNSSLSEFGVLGFELGYSM
Sbjct:   660 QDVERGTFSHRHSVLHDQETGEEYCPLDHLIMNQDPEMFTVSNSSLSEFGVLGFELGYSM 719

Query:   721 ENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSAR 780
             E+PNSLV+WEAQFGDFANGAQVIFDQF++SGE+KWLRQ+GLV++LPHGYDGQGPEHSSAR
Sbjct:   720 ESPNSLVLWEAQFGDFANGAQVIFDQFISSGEAKWLRQTGLVMLLPHGYDGQGPEHSSAR 779

Query:   781 LERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVV 840
             LER+LQMSDDNPYVIP+M+ T+R QIQECNWQIVN TTPANYFHVLRRQIHR+FRKPL+V
Sbjct:   780 LERYLQMSDDNPYVIPDMEPTMRKQIQECNWQIVNATTPANYFHVLRRQIHRDFRKPLIV 839

Query:   841 MSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSG 900
             M+PKNLLRHK+CKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQN+HSDLEEGIRRL+LCSG
Sbjct:   840 MAPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNDHSDLEEGIRRLVLCSG 899

Query:   901 KV 902
             KV
Sbjct:   900 KV 901
GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006099 "tricarboxylic acid cycle" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA
GO:0030976 "thiamine pyrophosphate binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IDA
GO:0050897 "cobalt ion binding" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2170000 AT5G65750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288127 ogdh "2-oxoglutarate dehydrogenase, E1 subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000029904 kgdA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPBC3H7.03c SPBC3H7.03c "2-oxoglutarate dehydrogenase (lipoamide) (e1 component of oxoglutarate dehydrogenase complex) (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|G4NAT3 MGG_12767 "2-oxoglutarate dehydrogenase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
SGD|S000001387 KGD1 "Subunit of the mitochondrial alpha-ketoglutarate dehydrogenase complex" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0006070 KGD1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|F1PK40 OGDHL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E9PCR7 OGDH "2-oxoglutarate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q1RHI4ODO1_RICBR1, ., 2, ., 4, ., 20.42490.84970.8478yesno
Q59106ODO1_CUPNH1, ., 2, ., 4, ., 20.43190.84970.8273yesno
Q60597ODO1_MOUSE1, ., 2, ., 4, ., 20.46770.93080.8416yesno
O74378ODO1_SCHPO1, ., 2, ., 4, ., 20.51410.89400.8196yesno
A6WXF0ODO1_OCHA41, ., 2, ., 4, ., 20.45390.86700.8011yesno
Q5XI78ODO1_RAT1, ., 2, ., 4, ., 20.46770.93080.8416yesno
P0AFG4ODO1_ECOL61, ., 2, ., 4, ., 20.42030.85400.8467yesno
Q92J42ODO1_RICCN1, ., 2, ., 4, ., 20.42340.84860.8459yesno
Q54JE4ODO1_DICDI1, ., 2, ., 4, ., 20.53310.91780.8381yesno
Q68XI7ODO1_RICTY1, ., 2, ., 4, ., 20.42590.84750.8403yesno
P20967ODO1_YEAST1, ., 2, ., 4, ., 20.47420.93290.8510yesno
Q9ZDY3ODO1_RICPR1, ., 2, ., 4, ., 20.42840.84430.8344yesno
Q02218ODO1_HUMAN1, ., 2, ., 4, ., 20.46930.92970.8406yesno
P20707ODO1_AZOVI1, ., 2, ., 4, ., 20.41680.85180.8356yesno
P45303ODO1_HAEIN1, ., 2, ., 4, ., 20.40110.84640.8374yesno
Q5RCB8ODO1_PONAB1, ., 2, ., 4, ., 20.46930.92970.8406yesno
Q72PJ7ODO1_LEPIC1, ., 2, ., 4, ., 20.43950.84320.8478yesno
P51056ODO1_COXBU1, ., 2, ., 4, ., 20.43130.84860.8404yesno
Q148N0ODO1_BOVIN1, ., 2, ., 4, ., 20.46560.93080.8416yesno
Q8F6S7ODO1_LEPIN1, ., 2, ., 4, ., 20.43950.84320.8478yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.2.40.921
4th Layer1.2.4.20.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_X2288
hypothetical protein (1021 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pm.C_LG_XIV0422
hypothetical protein (373 aa)
• ••••• 0.995
estExt_Genewise1_v1.C_LG_XI2803
hypothetical protein (467 aa)
• ••••• 0.992
LPD1
precursor of dehydrogenase dihydrolipoamide dehydrogenase 1 (EC-1.8.1.4) (511 aa)
• ••••• 0.981
LPD4
precursor of dehydrogenase dihydrolipoamide dehydrogenase 4 (EC-1.8.1.4) (529 aa)
•    •• 0.934
LPD3
precursor of dehydrogenase dihydrolipoamide dehydrogenase 3 (EC-1.8.1.4) (527 aa)
•    •• 0.934
grail3.0032001601
hypothetical protein (434 aa)
• ••••• 0.926
estExt_fgenesh4_pg.C_LG_XVI0781
SubName- Full=Putative uncharacterized protein; (363 aa)
   •••• 0.921
eugene3.00280188
isocitrate dehydrogenase (NAD+) (EC-1.1.1.41) (361 aa)
   •••• 0.921
estExt_fgenesh4_pg.C_660173
isocitrate dehydrogenase (NAD+) (EC-1.1.1.41) (371 aa)
   • •• 0.918
estExt_fgenesh4_pg.C_LG_VII0812
isocitrate dehydrogenase (NAD+) (EC-1.1.1.41) (367 aa)
   • •• 0.918

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query925
PRK09404924 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 co 0.0
COG0567906 COG0567, SucA, 2-oxoglutarate dehydrogenase comple 0.0
PRK122701228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 0.0
TIGR00239929 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenas 0.0
cd02016265 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate 0.0
pfam00676303 pfam00676, E1_dh, Dehydrogenase E1 component 2e-55
pfam02779172 pfam02779, Transket_pyr, Transketolase, pyrimidine 6e-51
smart00861136 smart00861, Transket_pyr, Transketolase, pyrimidin 3e-25
TIGR03182315 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E 8e-12
cd02000293 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph 3e-11
COG1071358 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena 9e-10
CHL00149341 CHL00149, odpA, pyruvate dehydrogenase E1 componen 8e-06
PLN02374433 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl 2e-04
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 0.001
>gnl|CDD|236499 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed Back     alignment and domain information 
 Score = 1243 bits (3219), Expect = 0.0
 Identities = 434/853 (50%), Positives = 548/853 (64%), Gaps = 64/853 (7%)

Query: 66  FLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNF---------------VGQAATSPGI 110
           FL G ++ Y+EEL   +  DP+SVDE W+ FF                    + A    +
Sbjct: 13  FLFGANAAYIEELYEQYLKDPDSVDEEWRAFFDGLPGVAPDVAHSAVRESFRRLAKPARV 72

Query: 111 SGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFL 170
           S       +++L L+ AY+  GH+ A LDPLGL +R    +LDPAFYG TEADLDR F  
Sbjct: 73  SSAVSDPQVKVLQLINAYRFRGHLAANLDPLGLWKRPDVPELDPAFYGLTEADLDRTFNT 132

Query: 171 GVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIETPTPMQ 230
           G         E     TLR I+  L++ YCGSIG EYMHISD E+  WL+ +IE+  P  
Sbjct: 133 GSL---ALGKETA---TLREIIEALKKTYCGSIGVEYMHISDPEERRWLQQRIESGRP-S 185

Query: 231 YNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESI 290
           ++ + ++ IL+RL  +  FE FL TK+   KRF LEGGE+LIP + E+  RA  LGV+ I
Sbjct: 186 FSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAGKLGVKEI 245

Query: 291 VIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTR 350
           VIGM HRGRLNVL NV+ KP R +F+EF G   P +      G+GDVKYHLG S DR T 
Sbjct: 246 VIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEV----LGSGDVKYHLGFSSDRETD 301

Query: 351 GGKRIHLSLVANPSHLEAVDPVVIGKTRAKQ-YYSNDMDRTKNMAVLIHGDGSFAGQGVV 409
           GG+ +HLSL  NPSHLE V+PVV G  RA+Q    +  DR K + +LIHGD +FAGQGVV
Sbjct: 302 GGE-VHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVV 360

Query: 410 YETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDM 469
            ETL+LS L  Y  GGTIHIV+NNQ+ FTT P   RS+ YCTDVAK + APIFHVNGDD 
Sbjct: 361 AETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDP 420

Query: 470 EAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIY 529
           EAV     LA E+RQ F  DVV+DLVCYRR GHNE DEPSFTQP MYK I+ HP++ E+Y
Sbjct: 421 EAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTRELY 480

Query: 530 QNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRI 589
            +KL+    +T+E+ +++  +    L   F   K++ P   DWL+  WS +    +    
Sbjct: 481 ADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPA--DWLAGDWSPYL-GHEWDDP 537

Query: 590 RNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATL 649
            +TGV  E LK + + +TT+PE FK H  VKK+ E R +M E  + IDW + EALAFA+L
Sbjct: 538 VDTGVPLERLKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASL 597

Query: 650 LVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEF 709
           L EG  VRLSGQD  RGTFSHRH+VLHDQ+TGE Y PL+H+   Q +  F V +S LSE 
Sbjct: 598 LDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQAS--FEVYDSPLSEE 655

Query: 710 GVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGY 769
            VLGFE GYS   PN+LV+WEAQFGDFANGAQV+ DQF++SGE KW R SGLV++LPHGY
Sbjct: 656 AVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLPHGY 715

Query: 770 DGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQ 829
           +GQGPEHSSARLERFLQ+  ++                  N Q+ N TTPA YFH+LRRQ
Sbjct: 716 EGQGPEHSSARLERFLQLCAED------------------NMQVCNPTTPAQYFHLLRRQ 757

Query: 830 IHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLE 889
             R FRKPLVVM+PK+LLRH    S+L E    +G          F+ +I D +E     
Sbjct: 758 ALRPFRKPLVVMTPKSLLRHPLAVSSLEEL--AEG---------SFQPVIGDIDELDP-- 804

Query: 890 EGIRRLILCSGKV 902
           + ++R++LCSGKV
Sbjct: 805 KKVKRVVLCSGKV 817

Length = 924
>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>gnl|CDD|238974 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) Back     alignment and domain information
>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component Back     alignment and domain information
>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain Back     alignment and domain information
>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain Back     alignment and domain information
>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) Back     alignment and domain information
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed Back     alignment and domain information
>gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring) Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 925
KOG04501017 consensus 2-oxoglutarate dehydrogenase, E1 subunit 100.0
PRK122701228 kgd alpha-ketoglutarate decarboxylase; Reviewed 100.0
COG0567906 SucA 2-oxoglutarate dehydrogenase complex, dehydro 100.0
TIGR00239929 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon 100.0
PRK09404924 sucA 2-oxoglutarate dehydrogenase E1 component; Re 100.0
KOG0451913 consensus Predicted 2-oxoglutarate dehydrogenase, 100.0
cd02016265 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami 100.0
COG1071358 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex 100.0
PLN02269362 Pyruvate dehydrogenase E1 component subunit alpha 100.0
PF00676300 E1_dh: Dehydrogenase E1 component; InterPro: IPR00 100.0
PLN02374433 pyruvate dehydrogenase (acetyl-transferring) 100.0
TIGR03182315 PDH_E1_alph_y pyruvate dehydrogenase E1 component, 100.0
KOG0225394 consensus Pyruvate dehydrogenase E1, alpha subunit 100.0
CHL00149341 odpA pyruvate dehydrogenase E1 component alpha sub 100.0
cd02000293 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) 100.0
TIGR03181341 PDH_E1_alph_x pyruvate dehydrogenase E1 component, 100.0
KOG1182432 consensus Branched chain alpha-keto acid dehydroge 100.0
PRK12315581 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
COG0022324 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex 100.0
TIGR00204617 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s 100.0
PRK05899624 transketolase; Reviewed 100.0
PRK05444580 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
PLN02234641 1-deoxy-D-xylulose-5-phosphate synthase 99.97
KOG0525362 consensus Branched chain alpha-keto acid dehydroge 99.97
PLN02582677 1-deoxy-D-xylulose-5-phosphate synthase 99.97
PRK12571 641 1-deoxy-D-xylulose-5-phosphate synthase; Provision 99.97
TIGR00232653 tktlase_bact transketolase, bacterial and yeast. T 99.96
KOG0524359 consensus Pyruvate dehydrogenase E1, beta subunit 99.96
PRK12753663 transketolase; Reviewed 99.94
PRK12754663 transketolase; Reviewed 99.94
PTZ00089661 transketolase; Provisional 99.93
PLN02790654 transketolase 99.93
PF02779178 Transket_pyr: Transketolase, pyrimidine binding do 99.92
PLN02225701 1-deoxy-D-xylulose-5-phosphate synthase 99.92
PTZ00182355 3-methyl-2-oxobutanate dehydrogenase; Provisional 99.9
PRK11892464 pyruvate dehydrogenase subunit beta; Provisional 99.89
CHL00144327 odpB pyruvate dehydrogenase E1 component beta subu 99.88
cd07036167 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding 99.88
PRK09212327 pyruvate dehydrogenase subunit beta; Validated 99.88
PLN02683356 pyruvate dehydrogenase E1 component subunit beta 99.86
PRK05261 785 putative phosphoketolase; Provisional 99.79
TIGR03186 889 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S 99.79
PRK09405 891 aceE pyruvate dehydrogenase subunit E1; Reviewed 99.76
PRK13012 896 2-oxoacid dehydrogenase subunit E1; Provisional 99.76
KOG0523632 consensus Transketolase [Carbohydrate transport an 99.71
cd02007195 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s 99.71
cd07033156 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai 99.7
smart00861168 Transket_pyr Transketolase, pyrimidine binding dom 99.69
COG0021663 TktA Transketolase [Carbohydrate transport and met 99.68
COG1154627 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m 99.67
cd02012255 TPP_TK Thiamine pyrophosphate (TPP) family, Transk 99.66
cd02011227 TPP_PK Thiamine pyrophosphate (TPP) family, Phosph 99.58
PF00456332 Transketolase_N: Transketolase, thiamine diphospha 99.53
PRK11864300 2-ketoisovalerate ferredoxin oxidoreductase subuni 99.5
COG3959243 Transketolase, N-terminal subunit [Carbohydrate tr 99.46
TIGR00759885 aceE pyruvate dehydrogenase E1 component, homodime 99.43
cd02017386 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam 99.41
cd00568168 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa 99.24
cd02004172 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam 99.2
cd02002178 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC 99.2
cd03372179 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE 99.16
cd02013196 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, 99.15
cd02014178 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv 99.09
cd02006202 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s 99.03
cd02001157 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil 99.0
cd02015186 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet 99.0
cd02008178 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, 99.0
PF02775153 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter 98.99
cd03371188 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp 98.96
cd02005183 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, 98.96
PRK07524535 hypothetical protein; Provisional 98.94
cd02010177 TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto 98.92
cd02003205 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD 98.89
PRK06163202 hypothetical protein; Provisional 98.89
PRK08327569 acetolactate synthase catalytic subunit; Validated 98.88
PF13292270 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn 98.86
TIGR03846181 sulfopy_beta sulfopyruvate decarboxylase, beta sub 98.85
PRK06725570 acetolactate synthase 3 catalytic subunit; Validat 98.85
cd03375193 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o 98.82
cd03376235 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam 98.78
cd02009175 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa 98.77
PRK06546578 pyruvate dehydrogenase; Provisional 98.77
PRK09628277 oorB 2-oxoglutarate-acceptor oxidoreductase subuni 98.76
cd02018237 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru 98.73
PRK11269591 glyoxylate carboligase; Provisional 98.71
PRK07092530 benzoylformate decarboxylase; Reviewed 98.71
PRK06154565 hypothetical protein; Provisional 98.7
COG0028550 IlvB Thiamine pyrophosphate-requiring enzymes [ace 98.7
PRK08266542 hypothetical protein; Provisional 98.69
TIGR01504588 glyox_carbo_lig glyoxylate carboligase. Glyoxylate 98.68
PRK05778301 2-oxoglutarate ferredoxin oxidoreductase subunit b 98.67
PRK12474518 hypothetical protein; Provisional 98.66
PRK07525588 sulfoacetaldehyde acetyltransferase; Validated 98.65
TIGR02720575 pyruv_oxi_spxB pyruvate oxidase. Members of this f 98.65
PRK07064544 hypothetical protein; Provisional 98.63
TIGR03457579 sulphoacet_xsc sulfoacetaldehyde acetyltransferase 98.63
TIGR03297361 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi 98.62
PRK07586514 hypothetical protein; Validated 98.61
PRK08199557 thiamine pyrophosphate protein; Validated 98.61
PRK09124574 pyruvate dehydrogenase; Provisional 98.6
PRK09107595 acetolactate synthase 3 catalytic subunit; Validat 98.6
PRK11869280 2-oxoacid ferredoxin oxidoreductase subunit beta; 98.6
PRK11865299 pyruvate ferredoxin oxidoreductase subunit beta; P 98.58
PRK07710571 acetolactate synthase catalytic subunit; Reviewed 98.57
PRK08155564 acetolactate synthase catalytic subunit; Validated 98.57
PRK06112578 acetolactate synthase catalytic subunit; Validated 98.57
PRK06882574 acetolactate synthase 3 catalytic subunit; Validat 98.57
CHL00099585 ilvB acetohydroxyacid synthase large subunit 98.57
PRK06457549 pyruvate dehydrogenase; Provisional 98.56
PRK07979574 acetolactate synthase 3 catalytic subunit; Validat 98.56
TIGR02418539 acolac_catab acetolactate synthase, catabolic. Ace 98.56
PRK07418616 acetolactate synthase 3 catalytic subunit; Reviewe 98.55
PRK05858542 hypothetical protein; Provisional 98.55
PRK06466574 acetolactate synthase 3 catalytic subunit; Validat 98.55
PLN02573578 pyruvate decarboxylase 98.55
TIGR00118558 acolac_lg acetolactate synthase, large subunit, bi 98.54
PRK08322547 acetolactate synthase; Reviewed 98.53
PRK06456572 acetolactate synthase catalytic subunit; Reviewed 98.52
PRK08617552 acetolactate synthase; Reviewed 98.52
PRK06965587 acetolactate synthase 3 catalytic subunit; Validat 98.51
PLN02470585 acetolactate synthase 98.51
PRK08527563 acetolactate synthase 3 catalytic subunit; Validat 98.5
PRK11866279 2-oxoacid ferredoxin oxidoreductase subunit beta; 98.5
PRK08979572 acetolactate synthase 3 catalytic subunit; Validat 98.5
PRK08611576 pyruvate oxidase; Provisional 98.49
PRK08978548 acetolactate synthase 2 catalytic subunit; Reviewe 98.49
PRK11867286 2-oxoglutarate ferredoxin oxidoreductase subunit b 98.49
TIGR03393539 indolpyr_decarb indolepyruvate decarboxylase, Erwi 98.49
PRK08273597 thiamine pyrophosphate protein; Provisional 98.45
PRK07789612 acetolactate synthase 1 catalytic subunit; Validat 98.44
TIGR02177287 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta 98.39
PRK06276586 acetolactate synthase catalytic subunit; Reviewed 98.39
TIGR03254554 oxalate_oxc oxalyl-CoA decarboxylase. In a number 98.38
PRK09259569 putative oxalyl-CoA decarboxylase; Validated 98.38
TIGR03394535 indol_phenyl_DC indolepyruvate/phenylpyruvate deca 98.37
PRK07449568 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 98.37
PRK06048561 acetolactate synthase 3 catalytic subunit; Reviewe 98.35
PRK07282566 acetolactate synthase catalytic subunit; Reviewed 98.31
TIGR03336595 IOR_alpha indolepyruvate ferredoxin oxidoreductase 98.24
COG3958312 Transketolase, C-terminal subunit [Carbohydrate tr 98.02
COG3957793 Phosphoketolase [Carbohydrate transport and metabo 98.01
PLN02980 1655 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi 97.84
KOG4166675 consensus Thiamine pyrophosphate-requiring enzyme 97.63
KOG1185571 consensus Thiamine pyrophosphate-requiring enzyme 97.53
PRK12270 1228 kgd alpha-ketoglutarate decarboxylase; Reviewed 97.45
PF09364379 XFP_N: XFP N-terminal domain; InterPro: IPR018970 97.33
COG3961557 Pyruvate decarboxylase and related thiamine pyroph 97.22
cd06586154 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of 97.12
COG1013294 PorB Pyruvate:ferredoxin oxidoreductase and relate 97.03
COG2609887 AceE Pyruvate dehydrogenase complex, dehydrogenase 96.92
COG3960592 Glyoxylate carboligase [General function predictio 96.73
COG3962617 Acetolactate synthase [Amino acid transport and me 96.36
KOG1184561 consensus Thiamine pyrophosphate-requiring enzyme 96.04
cd03377365 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), 94.67
COG4231640 Indolepyruvate ferredoxin oxidoreductase, alpha an 94.47
PRK08659 376 2-oxoglutarate ferredoxin oxidoreductase subunit a 93.35
TIGR03336 595 IOR_alpha indolepyruvate ferredoxin oxidoreductase 93.07
PRK07119352 2-ketoisovalerate ferredoxin reductase; Validated 91.9
TIGR021761165 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid 91.9
PRK09627 375 oorA 2-oxoglutarate-acceptor oxidoreductase subuni 91.43
cd07038162 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom 91.17
cd07035155 TPP_PYR_POX_like Pyrimidine (PYR) binding domain o 89.56
PF01855230 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta 89.22
cd06586154 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of 89.22
PRK08366 390 vorA 2-ketoisovalerate ferredoxin oxidoreductase s 88.29
cd07039164 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX 85.76
cd07034160 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi 85.73
TIGR03710 562 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s 84.75
PF02776172 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter 84.41
TIGR03845157 sulfopyru_alph sulfopyruvate decarboxylase, alpha 83.71
PRK09193 1165 indolepyruvate ferredoxin oxidoreductase; Validate 83.52
PRK08367 394 porA pyruvate ferredoxin oxidoreductase subunit al 83.09
PRK09622 407 porA pyruvate flavodoxin oxidoreductase subunit al 83.02
PRK08659376 2-oxoglutarate ferredoxin oxidoreductase subunit a 82.97
PRK13030 1159 2-oxoacid ferredoxin oxidoreductase; Provisional 82.29
COG1165566 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car 80.51
TIGR03845157 sulfopyru_alph sulfopyruvate decarboxylase, alpha 80.41
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=8.6e-247  Score=2046.71  Aligned_cols=845  Identities=63%  Similarity=1.058  Sum_probs=801.9

Q ss_pred             CCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHhhCCCCcCHHHHHHHhhccC------CCCCCCC---------------
Q 002419           51 APVPRPVPLSRLTDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVG------QAATSPG---------------  109 (925)
Q Consensus        51 ~~~~~~~~~~~~~~s~l~g~N~~yiEelY~~y~~DP~SVd~sWr~~F~~~~~------~~~~~~~---------------  109 (925)
                      ++.++.++++...++||+|+++.||||||+.|++||+|||.||++||+++.+      ++++.|+               
T Consensus        35 ~~~~r~~~~~~~td~Fl~g~ss~YveEmy~AW~~dP~SVh~SWDayFrn~~~~~~~~~~a~~~p~~~~~~~~~t~~~~~~  114 (1017)
T KOG0450|consen   35 QQVPRSVAASVATDPFLSGTSSSYVEEMYRAWLEDPNSVHKSWDAYFRNVSAGAPPPAQASQAPLSRSAAVAGTQSAVAA  114 (1017)
T ss_pred             ccccccccCcccccccccCcchHHHHHHHHHHHcCCchhhhhHHHHHHhcccCCCCccccccCCCccccccccccccccc
Confidence            5677888888899999999999999999999999999999999999998843      2222221               


Q ss_pred             -----CChhhHHHHHHHHHHHHHHHhcCccccccCCCCCCC---C-----CCCCCCCcccCCCCcccccceeecCccccc
Q 002419          110 -----ISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEE---R-----EIPDDLDPAFYGFTEADLDREFFLGVWSMA  176 (925)
Q Consensus       110 -----~~~~~~~~~~~~~~li~ayr~~GH~~A~ldPL~~~~---~-----~~~~~L~~~~~g~~~~dl~~~~~~~~~~~~  176 (925)
                           .+++.+.++++|+.||||||.|||..|+|||||+..   +     +.+++|++.+|||+|+|||++|.+.   ++
T Consensus       115 ~~~t~~s~~~v~~hl~vqlLiRaYQirGH~~A~LDPLGi~~~~~~~~~p~~i~~~~~l~~Ygf~E~DLDref~L~---~t  191 (1017)
T KOG0450|consen  115 RPNTGISDKTVEDHLKVQLLIRAYQIRGHHKAKLDPLGINDADLDSSVPADIPEELTLAFYGFTEADLDREFHLP---TT  191 (1017)
T ss_pred             ccCCCcccccHHHHHHHHHHHHHHHhcccccccCCccccccccccccCCCCCChhhhhhhcCCchhhccceeccC---Cc
Confidence                 224678999999999999999999999999999843   1     2466799999999999999999883   45


Q ss_pred             ccccCCCCCcCHHHHHHHHHHHhcCccccccccCCCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 002419          177 GFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATK  256 (925)
Q Consensus       177 ~~~~~~~~~~tl~eii~~L~~~Ycg~ig~E~~hi~~~~~~~Wl~~~iE~~~~~~ls~e~~~~iy~~m~~ar~fE~~l~~~  256 (925)
                      +|+++++..+|||||+++|+++||++||+|||||.|.++|+||++|||+|....+|.|+++-||.+|+++..||+||++|
T Consensus       192 ~Fi~~~~~~ltLreIl~rlE~~YC~~igvEfmhI~~~eqcnWir~k~EtP~~~q~s~e~k~~il~RL~~st~FE~FLa~K  271 (1017)
T KOG0450|consen  192 TFIGGGESSLTLREILRRLEKAYCGSIGVEFMHINDLEQCNWIRQKFETPGPMQYSHEQKRVILDRLTRSTRFEEFLATK  271 (1017)
T ss_pred             ccccCCCccccHHHHHHHHHHHhhccceeEEEeeCcHHHhHHHHHhccCCCccccCHHHHHHHHHHHHHhhHHHHHHhhh
Confidence            78888889999999999999999999999999999999999999999999989999999999999999999999999999


Q ss_pred             hhccccccccCccchHHHHHHHHHHHhhcCCCcEEEcCCccchHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCC
Q 002419          257 WTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGD  336 (925)
Q Consensus       257 ~~~~Krfg~eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~HRgrln~La~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgD  336 (925)
                      |+..||||+||||++||||+.+|+.++++||+++|+||+||||+|+|+||+.||+++||+||.|.... +     .||||
T Consensus       272 w~seKRFGLEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL~NVvRKpl~qIfseF~g~~~~-D-----eGSGD  345 (1017)
T KOG0450|consen  272 WPSEKRFGLEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLANVVRKPLEQIFSEFSGLEAA-D-----EGSGD  345 (1017)
T ss_pred             CCccccccccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHHHHHHhhHHHHHHHhccCCCCC-c-----CCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999995443 3     37899


Q ss_pred             ccccccccCCCCCC-CCcceeeeeccccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHh
Q 002419          337 VKYHLGTSYDRPTR-GGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHL  415 (925)
Q Consensus       337 vkyHlg~s~~~~~~-~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~Ealnl  415 (925)
                      ||||||++.++.+. +|+.|+|++++|||||+++.||++|+++|.|.+.+|.+++|++.|++||||||+|||+|||||++
T Consensus       346 VKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hl  425 (1017)
T KOG0450|consen  346 VKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHL  425 (1017)
T ss_pred             eeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhccccccceeEEEEEecchhhccCceEEEeecc
Confidence            99999999999887 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEE
Q 002419          416 SALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLV  495 (925)
Q Consensus       416 A~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~  495 (925)
                      +.||+|+|||+||||+|||+||||+|+.+||++||+|+||+.++||||||+||||||..+|+.|.|||.+|++||+||++
T Consensus       426 s~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlV  505 (1017)
T KOG0450|consen  426 SDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLV  505 (1017)
T ss_pred             ccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHHHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCCCCCCCcCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCc-cchhh
Q 002419          496 CYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNR-RDWLS  574 (925)
Q Consensus       496 tYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~-~~~~~  574 (925)
                      |||++||||.|+|+||||.||++|+++++.++.|.++|+++|.+|++|+++..+.+...+++||+.++++.|.. ++|++
T Consensus       506 cyRR~GHNE~DeP~FTQPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~~~~k~~~I~eeafe~sKd~~~~~~rdWL~  585 (1017)
T KOG0450|consen  506 CYRRHGHNEIDEPMFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNILEEAFERSKDYKPLHIRDWLD  585 (1017)
T ss_pred             EEeecCCCcccCccccchHHHHHHHcCCcHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999765 89999


Q ss_pred             hhccCCCCcccc---cccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 002419          575 AYWSGFKSPEQL---SRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLV  651 (925)
Q Consensus       575 ~~w~~~~~~~~~---~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~  651 (925)
                      .+|.+|.+|+..   ...++|||+.++|+.||+++.++||+|++|+.|+|+|+.|.+|+++ ++||||+||+|||+|||.
T Consensus       586 spW~gF~spd~~~~i~~~~~Tgv~~e~L~~ig~~~ss~PE~F~~Hrgl~Ril~~R~~mi~~-~~iDwal~EalAFgsLl~  664 (1017)
T KOG0450|consen  586 SPWPGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSVPEGFKIHRGLKRILKNRAQMIKS-EGVDWALAEALAFGSLLK  664 (1017)
T ss_pred             CCCccccCccCCCccccCCCCCCCHHHHHHHHHhhccCCcccchhhhHHHHHHHHHHhhhh-cccchHHHHHHHHHHHHh
Confidence            999999987322   2356799999999999999999999999999999999999999998 899999999999999999


Q ss_pred             cCCcEEEecccCCCcccccccceeeecCCC-ceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCCCCCcceeec
Q 002419          652 EGNHVRLSGQDVERGTFSHRHSVLHDQETG-EQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWE  730 (925)
Q Consensus       652 ~~~~v~l~GqDv~rGtF~~RHav~~dq~t~-~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~~~lviwE  730 (925)
                      ||.+||||||||+||||||||+|||||+++ ++|+||++|+  ..|+++.|.||.|||+||||||+||||++|+.|||||
T Consensus       665 EG~hVRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~--~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVlWE  742 (1017)
T KOG0450|consen  665 EGIHVRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLW--PNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVLWE  742 (1017)
T ss_pred             cCceEEeecccccccccccchhhhcccccCcceecchhhcC--CCCCceeeeccchhhhheecceecccccCCCceEEee
Confidence            999999999999999999999999999999 8999999999  7899999999999999999999999999999999999


Q ss_pred             hhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCccCCCCCccCCCchhhhhhhccCCCCCcccCCCCchhccccccC
Q 002419          731 AQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECN  810 (925)
Q Consensus       731 aqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPhG~~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~N  810 (925)
                      ||||||+|+||+||||||++|++||.+++||||+|||||+|+||||||+|+|||||||+|||++||.....+.+|+|+||
T Consensus       743 AQFGDFaNtAQ~IiDQFIssGqaKW~rqsGlVllLPHGyeG~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Ql~dcN  822 (1017)
T KOG0450|consen  743 AQFGDFANTAQCIIDQFISSGQAKWVRQSGLVLLLPHGYEGMGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQLQDCN  822 (1017)
T ss_pred             hhhccccccchhhHHhHhccchhhhhhhcCeEEEccCCcCCCCcccccccHHHHHHhccCCCccCCcccHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999988756889999999


Q ss_pred             eEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCC
Q 002419          811 WQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEE  890 (925)
Q Consensus       811 l~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~  890 (925)
                      |+||||||||||||+|||||+++||||||+|+||+|||||.|.|+++||.+          |+.||+||+|....+.+|+
T Consensus       823 w~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~----------g~~fq~vi~e~g~~~~~pe  892 (1017)
T KOG0450|consen  823 WQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDE----------GTGFQRVIPEDGKAAQNPE  892 (1017)
T ss_pred             eEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhcc----------CCCCceeccccccccCChh
Confidence            999999999999999999999999999999999999999999999999996          6899999999776677899


Q ss_pred             CccEEEEecchHHHHHHHHHHHhhhcc
Q 002419          891 GIRRLILCSGKVSSAVCVALYFFYNFG  917 (925)
Q Consensus       891 ~v~rvilcsGkvyydL~~~~~~~~~~~  917 (925)
                      +|||||||||||||||.++++.---.+
T Consensus       893 ~vkrlv~csGkVyydL~k~Rk~~~~~~  919 (1017)
T KOG0450|consen  893 NVKRLVFCSGKVYYDLTKERKEVGLEG  919 (1017)
T ss_pred             hceEEEEecceEehhhhHHHHhcCccc
Confidence            999999999999999999998765333

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed Back     alignment and domain information
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) Back     alignment and domain information
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha Back     alignment and domain information
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex Back     alignment and domain information
>PLN02374 pyruvate dehydrogenase (acetyl-transferring) Back     alignment and domain information
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion] Back     alignment and domain information
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed Back     alignment and domain information
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) Back     alignment and domain information
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] Back     alignment and domain information
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK05899 transketolase; Reviewed Back     alignment and domain information
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion] Back     alignment and domain information
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>TIGR00232 tktlase_bact transketolase, bacterial and yeast Back     alignment and domain information
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion] Back     alignment and domain information
>PRK12753 transketolase; Reviewed Back     alignment and domain information
>PRK12754 transketolase; Reviewed Back     alignment and domain information
>PTZ00089 transketolase; Provisional Back     alignment and domain information
>PLN02790 transketolase Back     alignment and domain information
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 Back     alignment and domain information
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional Back     alignment and domain information
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated Back     alignment and domain information
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins Back     alignment and domain information
>PRK09212 pyruvate dehydrogenase subunit beta; Validated Back     alignment and domain information
>PLN02683 pyruvate dehydrogenase E1 component subunit beta Back     alignment and domain information
>PRK05261 putative phosphoketolase; Provisional Back     alignment and domain information
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase Back     alignment and domain information
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed Back     alignment and domain information
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional Back     alignment and domain information
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis Back     alignment and domain information
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins Back     alignment and domain information
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain Back     alignment and domain information
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Back     alignment and domain information
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates Back     alignment and domain information
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O Back     alignment and domain information
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2 Back     alignment and domain information
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type Back     alignment and domain information
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E Back     alignment and domain information
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor Back     alignment and domain information
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) Back     alignment and domain information
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) Back     alignment and domain information
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) Back     alignment and domain information
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) Back     alignment and domain information
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions Back     alignment and domain information
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) Back     alignment and domain information
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) Back     alignment and domain information
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS Back     alignment and domain information
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit Back     alignment and domain information
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins Back     alignment and domain information
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) Back     alignment and domain information
>PRK07524 hypothetical protein; Provisional Back     alignment and domain information
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation Back     alignment and domain information
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv Back     alignment and domain information
>PRK06163 hypothetical protein; Provisional Back     alignment and domain information
>PRK08327 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B Back     alignment and domain information
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit Back     alignment and domain information
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor Back     alignment and domain information
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria Back     alignment and domain information
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) Back     alignment and domain information
>PRK06546 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed Back     alignment and domain information
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways Back     alignment and domain information
>PRK11269 glyoxylate carboligase; Provisional Back     alignment and domain information
>PRK07092 benzoylformate decarboxylase; Reviewed Back     alignment and domain information
>PRK06154 hypothetical protein; Provisional Back     alignment and domain information
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK08266 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01504 glyox_carbo_lig glyoxylate carboligase Back     alignment and domain information
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated Back     alignment and domain information
>PRK12474 hypothetical protein; Provisional Back     alignment and domain information
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated Back     alignment and domain information
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase Back     alignment and domain information
>PRK07064 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase Back     alignment and domain information
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase Back     alignment and domain information
>PRK07586 hypothetical protein; Validated Back     alignment and domain information
>PRK08199 thiamine pyrophosphate protein; Validated Back     alignment and domain information
>PRK09124 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PRK07710 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK08155 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK06112 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>CHL00099 ilvB acetohydroxyacid synthase large subunit Back     alignment and domain information
>PRK06457 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>TIGR02418 acolac_catab acetolactate synthase, catabolic Back     alignment and domain information
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>PRK05858 hypothetical protein; Provisional Back     alignment and domain information
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PLN02573 pyruvate decarboxylase Back     alignment and domain information
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type Back     alignment and domain information
>PRK08322 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK06456 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK08617 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PLN02470 acetolactate synthase Back     alignment and domain information
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08611 pyruvate oxidase; Provisional Back     alignment and domain information
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed Back     alignment and domain information
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed Back     alignment and domain information
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family Back     alignment and domain information
>PRK08273 thiamine pyrophosphate protein; Provisional Back     alignment and domain information
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated Back     alignment and domain information
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family Back     alignment and domain information
>PRK06276 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase Back     alignment and domain information
>PRK09259 putative oxalyl-CoA decarboxylase; Validated Back     alignment and domain information
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family Back     alignment and domain information
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated Back     alignment and domain information
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>PRK07282 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit Back     alignment and domain information
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding Back     alignment and domain information
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria Back     alignment and domain information
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] Back     alignment and domain information
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes Back     alignment and domain information
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion] Back     alignment and domain information
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] Back     alignment and domain information
>COG3960 Glyoxylate carboligase [General function prediction only] Back     alignment and domain information
>COG3962 Acetolactate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes Back     alignment and domain information
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated Back     alignment and domain information
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit Back     alignment and domain information
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated Back     alignment and domain information
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric Back     alignment and domain information
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed Back     alignment and domain information
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins Back     alignment and domain information
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins Back     alignment and domain information
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains Back     alignment and domain information
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes Back     alignment and domain information
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX Back     alignment and domain information
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins Back     alignment and domain information
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit Back     alignment and domain information
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit Back     alignment and domain information
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated Back     alignment and domain information
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated Back     alignment and domain information
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism] Back     alignment and domain information
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query925
2jgd_B933 E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length = 0.0
2jgd_A933 E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length = 0.0
2xta_A868 Crystal Structure Of The Suca Domain Of Mycobacteri 1e-175
2xt6_A1113 Crystal Structure Of Mycobacterium Smegmatis Alpha- 1e-175
2ozl_A365 Human Pyruvate Dehydrogenase S264e Variant Length = 1e-04
1um9_A367 Branched-chain 2-oxo Acid Dehydrogenase (e1) From T 2e-04
3exi_A382 Crystal Structure Of The Pyruvate Dehydrogenase (E1 3e-04
3exe_A382 Crystal Structure Of The Pyruvate Dehydrogenase (E1 3e-04
3exf_A382 Crystal Structure Of The Pyruvate Dehydrogenase (E1 8e-04
>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length = 933 Back     alignment and structure 
Iteration: 1

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/866 (42%), Positives = 498/866 (57%), Gaps = 76/866 (8%)
Query: 62  LTDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQAATSPGISGQTIQ----- 116
           L  ++L G +  ++E+L   +  DP+SVD +W++ F+   G          QT +     
Sbjct: 10  LDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRL 69
Query: 117 ------------------ESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYG 158
                             + +++L L+ AY+  GH  A LDPLGL +++   DLDP+F+ 
Sbjct: 70  AKDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQDKVADLDPSFHD 129
Query: 159 FTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNW 218
            TEAD    F +G ++        +    L  +L  L+Q YCG IG EYMHI+  E+  W
Sbjct: 130 LTEADFQETFNVGSFA------SGKETMKLGELLEALKQTYCGPIGAEYMHITSTEEKRW 183
Query: 219 LRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEM 278
           ++ +IE+     +N + ++  L  L  +   E +L  K+  AKRF LEGG+ LIP +KEM
Sbjct: 184 IQQRIESGRAT-FNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEM 242
Query: 279 FDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVK 338
              A + G   +V+GM HRGRLNVL NV+ K  + +F EF+G  +       + GTGDVK
Sbjct: 243 IRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKE------HLGTGDVK 296
Query: 339 YHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIH 398
           YH+G S D  T GG  +HL+L  NPSHLE V PVVIG  RA+    ++    K + + IH
Sbjct: 297 YHMGFSSDFQTDGG-LVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIH 355
Query: 399 GDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTT-DPMSGRSSQYCTDVAKAL 457
           GD +  GQGVV ETL++S    Y +GGT+ IV+NNQV FTT +P+  RS+ YCTD+ K +
Sbjct: 356 GDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMV 415
Query: 458 DAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYK 517
            APIFHVN DD EAVA V  LA ++R TF  DV +DLVCYRR GHNE DEPS TQP MY+
Sbjct: 416 QAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQ 475
Query: 518 IIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYW 577
            I+ HP+  +IY +KL + +  T ED  ++       L        ++ P   +  S  W
Sbjct: 476 KIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRP--MNMHSFTW 533
Query: 578 SGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGID 637
           S + + E      N  V+ + L+ + K I+T+PE  +    V K+Y  R  M    +  D
Sbjct: 534 SPYLNHEWDEEYPNK-VEMKRLQELAKRISTVPEAVEMQSRVAKIYADRQAMAAGEKLFD 592
Query: 638 WALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAE 697
           W   E LA+ATL+ EG  VRLSG+D  RGTF HRH+V+H+Q  G  Y PL H+   Q A 
Sbjct: 593 WGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGA- 651
Query: 698 MFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLR 757
            F V +S LSE  VL FE GY+   P +L +WEAQFGDFANGAQV+ DQF++SGE KW R
Sbjct: 652 -FRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGR 710
Query: 758 QSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVT 817
             GLV++LPHGY+GQGPEHSSARLER+LQ+                    E N Q+   +
Sbjct: 711 MCGLVMLLPHGYEGQGPEHSSARLERYLQL------------------CAEQNMQVCVPS 752
Query: 818 TPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKR 877
           TPA  +H+LRRQ  R  R+PLVVMSPK+LLRH    S+L E  +    P           
Sbjct: 753 TPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAI--------- 803
Query: 878 LIKDQNEHSDLE-EGIRRLILCSGKV 902
                 E  +L+ +G++R+++CSGKV
Sbjct: 804 -----GEIDELDPKGVKRVVMCSGKV 824
>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length = 933 Back     alignment and structure
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex With Acetyl-Coa (Triclinic Form) Length = 868 Back     alignment and structure
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic Form) Length = 1113 Back     alignment and structure
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant Length = 365 Back     alignment and structure
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 367 Back     alignment and structure
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex With The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot Be Modeled Into The Electron Density Length = 382 Back     alignment and structure
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 Back     alignment and structure
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query925
2jgd_A933 2-oxoglutarate dehydrogenase E1 component; flavopr 0.0
2xt6_A1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 0.0
2yic_A868 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 0.0
2ozl_A365 PDHE1-A type I, pyruvate dehydrogenase E1 componen 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
1umd_A367 E1-alpha, 2-OXO acid dehydrogenase alpha subunit; 2e-04
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Length = 933 Back     alignment and structure
 Score = 1360 bits (3522), Expect = 0.0
 Identities = 359/865 (41%), Positives = 493/865 (56%), Gaps = 74/865 (8%)

Query: 62  LTDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQAA---------------- 105
           L  ++L G +  ++E+L   +  DP+SVD +W++ F+   G                   
Sbjct: 10  LDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRL 69

Query: 106 -------TSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYG 158
                  +S      T  + +++L L+ AY+  GH  A LDPLGL +++   DLDP+F+ 
Sbjct: 70  AKDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQDKVADLDPSFHD 129

Query: 159 FTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNW 218
            TEAD    F +G ++        +    L  +L  L+Q YCG IG EYMHI+  E+  W
Sbjct: 130 LTEADFQETFNVGSFA------SGKETMKLGELLEALKQTYCGPIGAEYMHITSTEEKRW 183

Query: 219 LRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEM 278
           ++ +IE+     +N + ++  L  L  +   E +L  K+  AKRF LEGG+ LIP +KEM
Sbjct: 184 IQQRIESGRA-TFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEM 242

Query: 279 FDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVK 338
              A + G   +V+GM HRGRLNVL NV+ K  + +F EF+G  +         GTGDVK
Sbjct: 243 IRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHL------GTGDVK 296

Query: 339 YHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIH 398
           YH+G S D  T  G  +HL+L  NPSHLE V PVVIG  RA+    ++    K + + IH
Sbjct: 297 YHMGFSSDFQT-DGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIH 355

Query: 399 GDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTT-DPMSGRSSQYCTDVAKAL 457
           GD +  GQGVV ETL++S    Y +GGT+ IV+NNQV FTT +P+  RS+ YCTD+ K +
Sbjct: 356 GDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMV 415

Query: 458 DAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYK 517
            APIFHVN DD EAVA V  LA ++R TF  DV +DLVCYRR GHNE DEPS TQP MY+
Sbjct: 416 QAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQ 475

Query: 518 IIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYW 577
            I+ HP+  +IY +KL + +  T ED  ++       L        ++ P      +  W
Sbjct: 476 KIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFT--W 533

Query: 578 SGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGID 637
           S + + E         V+ + L+ + K I+T+PE  +    V K+Y  R  M    +  D
Sbjct: 534 SPYLNHEWDEEY-PNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFD 592

Query: 638 WALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAE 697
           W   E LA+ATL+ EG  VRLSG+D  RGTF HRH+V+H+Q  G  Y PL H+   Q   
Sbjct: 593 WGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQ--G 650

Query: 698 MFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLR 757
            F V +S LSE  VL FE GY+   P +L +WEAQFGDFANGAQV+ DQF++SGE KW R
Sbjct: 651 AFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGR 710

Query: 758 QSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVT 817
             GLV++LPHGY+GQGPEHSSARLER+LQ+  +                   N Q+   +
Sbjct: 711 MCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQ------------------NMQVCVPS 752

Query: 818 TPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKR 877
           TPA  +H+LRRQ  R  R+PLVVMSPK+LLRH    S+L E  +             F  
Sbjct: 753 TPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAN-----------GTFLP 801

Query: 878 LIKDQNEHSDLEEGIRRLILCSGKV 902
            I + +E     +G++R+++CSGKV
Sbjct: 802 AIGEIDELDP--KGVKRVVMCSGKV 824
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113 Back     alignment and structure
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Length = 868 Back     alignment and structure
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query925
2jgd_A933 2-oxoglutarate dehydrogenase E1 component; flavopr 100.0
2xt6_A1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 100.0
2yic_A868 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 100.0
1qs0_A407 2-oxoisovalerate dehydrogenase alpha-subunit; hete 100.0
2bfd_A400 2-oxoisovalerate dehydrogenase alpha subunit; oxid 100.0
2ozl_A365 PDHE1-A type I, pyruvate dehydrogenase E1 componen 100.0
1w85_A368 Pyruvate dehydrogenase E1 component, alpha subunit 100.0
1umd_A367 E1-alpha, 2-OXO acid dehydrogenase alpha subunit; 100.0
2o1s_A621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 100.0
2o1x_A629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 100.0
3mos_A616 Transketolase, TK; thiamin diphosphate TPP THDP en 100.0
1gpu_A680 Transketolase; transferase(ketone residues); HET: 100.0
3rim_A700 Transketolase, TK; TPP, transferase; HET: TPP; 2.4 100.0
1r9j_A673 Transketolase; domains, EACH of the alpha/beta typ 100.0
2e6k_A651 Transketolase; structural genomics, NPPSFA, nation 100.0
2r8o_A669 Transketolase 1, TK 1; reaction intermediate, calc 100.0
3kom_A663 Transketolase; rossmann fold, csgid, transferase, 100.0
3m49_A690 Transketolase; alpha-beta-alpha sandwich, csgid, t 100.0
1itz_A675 Transketolase; calvin cycle, cofactor, thiamine py 100.0
3l84_A632 Transketolase; TKT, structural genomics, center fo 100.0
3uk1_A711 Transketolase; structural genomics, seattle struct 100.0
2ozl_B341 PDHE1-B, pyruvate dehydrogenase E1 component subun 99.95
2qtc_A 886 Pyruvate dehydrogenase E1 component; thiamin dipho 99.95
2bfd_B342 2-oxoisovalerate dehydrogenase beta subunit; oxido 99.95
1ik6_A369 Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o 99.94
1qs0_B338 2-oxoisovalerate dehydrogenase beta-subunit; heter 99.94
1umd_B324 E1-beta, 2-OXO acid dehydrogenase beta subunit; al 99.94
1w85_B324 Pyruvate dehydrogenase E1 component, beta subunit; 99.93
4feg_A603 Pyruvate oxidase; carbanion, structure activity re 99.61
3ahc_A 845 Phosphoketolase, xylulose 5-phosphate/fructose 6-p 99.43
1v5e_A590 Pyruvate oxidase; oxidoreductase, flavoprotein; HE 99.07
2pan_A616 Glyoxylate carboligase; thiamin-diphosphate (THDP) 99.02
1q6z_A528 BFD, BFDC, benzoylformate decarboxylase; lyase, ca 98.98
2iht_A573 Carboxyethylarginine synthase; thiamin diphosphate 98.91
1ozh_A566 ALS, acetolactate synthase, catabolic; acetohydrox 98.9
2vk8_A563 Pyruvate decarboxylase isozyme 1; asymmetric activ 98.89
2uz1_A563 Benzaldehyde lyase; thiamine diphosphate, thiamine 98.88
2pgn_A589 Cyclohexane-1,2-dione hydrolase (CDH); three alpha 98.84
1ybh_A590 Acetolactate synthase, chloroplast; acetohydroxyac 98.83
1t9b_A677 Acetolactate synthase, mitochondrial; acetohydroxy 98.81
1ovm_A552 Indole-3-pyruvate decarboxylase; thiamine diphosph 98.8
2nxw_A565 Phenyl-3-pyruvate decarboxylase; thiamine pyrophos 98.77
2vbf_A570 Branched-chain alpha-ketoacid decarboxylase; KDCA, 98.77
2vbi_A566 Pyruvate decarboxylase; thiamine pyrophosphate, ly 98.76
2wvg_A568 PDC, pyruvate decarboxylase; thiamine diphosphate, 98.73
3eya_A549 Pyruvate dehydrogenase [cytochrome]; pyruvate oxid 98.73
2c31_A568 Oxalyl-COA decarboxylase; oxalate, thiamin diphosp 98.64
3hww_A556 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 98.63
2q28_A564 Oxalyl-COA decarboxylase; lyase, oxalate degradati 98.63
2x7j_A604 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - 98.63
1yd7_A 395 2-keto acid:ferredoxin oxidoreductase subunit alph 98.6
3lq1_A578 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 98.48
2c42_A 1231 Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, 98.01
2c42_A1231 Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, 97.68
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Back     alignment and structure
Probab=100.00  E-value=2e-177  Score=1614.09  Aligned_cols=802  Identities=45%  Similarity=0.748  Sum_probs=659.5

Q ss_pred             CCCccCCCCHHHHHHHHHHHhhCCCCcCHHHHHHHhhccC-----CCCCCC----------CC--------ChhhHHHHH
Q 002419           63 TDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVG-----QAATSP----------GI--------SGQTIQESM  119 (925)
Q Consensus        63 ~~s~l~g~N~~yiEelY~~y~~DP~SVd~sWr~~F~~~~~-----~~~~~~----------~~--------~~~~~~~~~  119 (925)
                      ++|||+|.|+.|||+||++|++||+||+++|+.||+++..     .....+          ..        ......+++
T Consensus        11 ~~~~~~~~~~~~~~~~y~~~~~~p~sv~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (933)
T 2jgd_A           11 DSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQV   90 (933)
T ss_dssp             -------------------------------------------------------------------------CHHHHHH
T ss_pred             hhcccccccHHHHHHHHHHHhhCccccCHHHHHHHhcccccCCcccccccchhhhhhhccccccccccccCcchhHHHHH
Confidence            4589999999999999999999999999999999998731     100000          00        112345788


Q ss_pred             HHHHHHHHHHhcCccccccCCCCCCCCCCCCCCCcccCCCCcccccceeecCcccccccccCCCCCcCHHHHHHHHHHHh
Q 002419          120 RLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAY  199 (925)
Q Consensus       120 ~~~~li~ayr~~GH~~A~ldPL~~~~~~~~~~L~~~~~g~~~~dl~~~~~~~~~~~~~~~~~~~~~~tl~eii~~L~~~Y  199 (925)
                      +|++||+|||.|||+.|+||||++..+..+++|++++|||+++|||++|.++.     +.. +...+||+||+++|+++|
T Consensus        91 ~~~~li~~yr~~gh~~a~~dpl~~~~~~~~~~l~~~~~g~~~~d~~~~~~~~~-----~~~-~~~~~~l~~~~~~l~~~y  164 (933)
T 2jgd_A           91 KVLQLINAYRFRGHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGS-----FAS-GKETMKLGELLEALKQTY  164 (933)
T ss_dssp             HHHHHHHHHHHHGGGGSCCCSSSCCCCC---CCSSGGGGCCC-CTTSEEECTT-----CC----CEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccccccCCCCCCCCCCCCCCCHhHcCCchhhccceeccCc-----ccc-CcCcCcHHHHHHHHHHhc
Confidence            99999999999999999999999865667889999999999999999999872     221 456789999999999999


Q ss_pred             cCccccccccCCCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCccchHHHHHHHH
Q 002419          200 CGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMF  279 (925)
Q Consensus       200 cg~ig~E~~hi~~~~~~~Wl~~~iE~~~~~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg~eG~Ea~i~gl~~~l  279 (925)
                      ||+||+|||||.|+++|+||+++||+. .+.+++|+++++|++|+++|.||+++.++|+++||||++|||++++|+++++
T Consensus       165 c~~ig~e~~~i~~~~~~~w~~~~~e~~-~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~~~G~Ea~i~g~~~~~  243 (933)
T 2jgd_A          165 CGPIGAEYMHITSTEEKRWIQQRIESG-RATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMI  243 (933)
T ss_dssp             HSSEEEECSSCCCHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHHHH
T ss_pred             cCCCcceeeecCCHHHhHHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCchHHHHHHHHHH
Confidence            999999999999999999999999976 5689999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCcEEEcCCccchHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeee
Q 002419          280 DRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSL  359 (925)
Q Consensus       280 ~~a~~~gv~D~vigm~HRgrln~La~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l  359 (925)
                      ++|+..|++|+|+||+||||+|+|+|++|+|+.+||+||+|+.++.+      |+||||||+|++....+. |..+|+++
T Consensus       244 ~~a~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~------g~gdv~~Hlg~~~~~~~~-gg~~~l~l  316 (933)
T 2jgd_A          244 RHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHL------GTGDVKYHMGFSSDFQTD-GGLVHLAL  316 (933)
T ss_dssp             HHHHTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CC------SCCCCGGGCCEEEEEEET-TEEEEEEE
T ss_pred             HHHhhCCCCCEEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCC------CCCCccccCCcccccccC-CCceEEee
Confidence            99999999999999999999999999999999999999999986643      458999999976654443 45799999


Q ss_pred             ccccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCccccc
Q 002419          360 VANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTT  439 (925)
Q Consensus       360 ~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT  439 (925)
                      ++||||+|+++|+|+|+|+|.|+++.+.++.+.++||+|||||+++||++|||||+|.+.+|.|||+||||+||||||+|
T Consensus       317 ~~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist  396 (933)
T 2jgd_A          317 AFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTT  396 (933)
T ss_dssp             CCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC-----
T ss_pred             cccCcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccC
Confidence            99999999999999999999998764433456899999999998449999999999999999999999999999999999


Q ss_pred             -CCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCCcCHHHHHH
Q 002419          440 -DPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKI  518 (925)
Q Consensus       440 -~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~ytqp~ey~~  518 (925)
                       ++.+++++.|++++|++||+|++||||+|++||++|++.|++++|++++|+|||++|||++|||++|+|+||+|+||+.
T Consensus       397 ~~~~~~~~~~~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~~yr~~~e~~~  476 (933)
T 2jgd_A          397 SNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQK  476 (933)
T ss_dssp             ----------CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-----------CCTTHHH
T ss_pred             CCHHhcccchhHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccchhhCCHHHHHH
Confidence             9988888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHH
Q 002419          519 IRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEI  598 (925)
Q Consensus       519 i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~t~v~~~~  598 (925)
                      |++++||+.+|+++|+++|++|++++++++++++++|+++++.|++..|.+.++  ..|.++... ......+|+++.+.
T Consensus       477 ~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~--~~~~~~~~~-~~~~~~~tg~~~~~  553 (933)
T 2jgd_A          477 IKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHS--FTWSPYLNH-EWDEEYPNKVEMKR  553 (933)
T ss_dssp             HHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGG--CTTGGGSSC-CTTCCCCCCCCHHH
T ss_pred             HHccCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch--hhccccccc-ccccCCCCCCCHHH
Confidence            998899999999999999999999999999999999999999988754443332  356654321 11124679999999


Q ss_pred             HHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEecccCCCcccccccceeeec
Q 002419          599 LKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQ  678 (925)
Q Consensus       599 l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~rGtF~~RHav~~dq  678 (925)
                      |+.+++++..+|++|++|++++|++++|.+|+++++.+||+++|++||++||.+|++|+++||||++|||+|||||||||
T Consensus       554 l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~al~~l~~~~~~V~~~g~Dv~~gTfs~rh~v~~d~  633 (933)
T 2jgd_A          554 LQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQ  633 (933)
T ss_dssp             HHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEETTTTTCTTSCCCCSEECS
T ss_pred             HHHHHhhhcCCCCCCcccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCEEEECCccCCcchhhhhhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCc
Q 002419          679 ETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQ  758 (925)
Q Consensus       679 ~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~  758 (925)
                      +||..|+||++|.  ++||++||+||||||++++||++|||+.|+++|+|||+|||||+|+||.++|||+++++.||+++
T Consensus       634 ~~g~~~~~l~~l~--~~~gp~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~~~~  711 (933)
T 2jgd_A          634 SNGSTYTPLQHIH--NGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRM  711 (933)
T ss_dssp             SSSCEECGGGCSC--TTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHHCCC
T ss_pred             cCCceeechHHHH--HHcCCCeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEEEhhhhcccHHHHHHHHHHHHHHHccC
Confidence            9999999999999  99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEcCccCCCCCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcE
Q 002419          759 SGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPL  838 (925)
Q Consensus       759 ~~lv~~lPhG~~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pl  838 (925)
                      +||||++||||+|+||+|||+|+|+|||||+.+                  ||+|++||||+|+|||||+|+.+++++||
T Consensus       712 ~~vv~~l~~G~~g~G~~Hss~~~E~~l~~~~~p------------------nm~V~~Pst~~e~~~lLr~a~~~~~~~Pv  773 (933)
T 2jgd_A          712 CGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQ------------------NMQVCVPSTPAQVYHMLRRQALRGMRRPL  773 (933)
T ss_dssp             CCCEEEEECCCSSSCTTSSCCCHHHHHHTCCTT------------------CCEEECCCSHHHHHHHHHHHHHSSCCCCE
T ss_pred             CCEEEEEeCCCCCCCcccccchHHHHHHHhCCC------------------CeEEEecCCHHHHHHHHHHHHHhcCCCcE
Confidence            999999999999999999999999999999863                  69999999999999999999877789999


Q ss_pred             EEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhh
Q 002419          839 VVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFY  914 (925)
Q Consensus       839 i~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~  914 (925)
                      ||++||+|||++.++++++++.+           +.|+.+|++...  ...++|+|||+|+|++||+|.++++.+.
T Consensus       774 ii~~pk~l~r~~~~~~~~~~~~~-----------~~f~~~ig~~~~--~~g~dV~~vI~~~G~v~~~l~aa~~~l~  836 (933)
T 2jgd_A          774 VVMSPKSLLRHPLAVSSLEELAN-----------GTFLPAIGEIDE--LDPKGVKRVVMCSGKVYYDLLEQRRKNN  836 (933)
T ss_dssp             EEEECSGGGGCTTCCBCHHHHHH-----------CCCCSEECCCSC--CCGGGCCEEEEECTTHHHHHHHHHHHTT
T ss_pred             EEEecchhccCCCCcCCccccCC-----------CceeecCCcceE--eecCcceEEEEEchHHHHHHHHHHHHcc
Confidence            99999999999998888888875           779999988753  2367899999999999999999987664
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Back     alignment and structure
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Back     alignment and structure
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Back     alignment and structure
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Back     alignment and structure
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Back     alignment and structure
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Back     alignment and structure
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Back     alignment and structure
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Back     alignment and structure
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Back     alignment and structure
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Back     alignment and structure
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Back     alignment and structure
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Back     alignment and structure
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Back     alignment and structure
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Back     alignment and structure
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Back     alignment and structure
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Back     alignment and structure
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* Back     alignment and structure
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Back     alignment and structure
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Back     alignment and structure
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Back     alignment and structure
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Back     alignment and structure
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Back     alignment and structure
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Back     alignment and structure
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* Back     alignment and structure
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Back     alignment and structure
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Back     alignment and structure
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Back     alignment and structure
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Back     alignment and structure
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Back     alignment and structure
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Back     alignment and structure
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Back     alignment and structure
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Back     alignment and structure
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 Back     alignment and structure
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Back     alignment and structure
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Back     alignment and structure
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Back     alignment and structure
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* Back     alignment and structure
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Back     alignment and structure
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Back     alignment and structure
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Back     alignment and structure
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Back     alignment and structure
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Back     alignment and structure
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} Back     alignment and structure
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Back     alignment and structure
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Back     alignment and structure
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 925
d1umda_362 c.36.1.11 (A:) Branched-chain alpha-keto acid dehy 2e-16
d2bfda1395 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid 1e-11
d1qs0a_407 c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B 2e-11
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

 Score = 79.6 bits (195), Expect = 2e-16
 Identities = 37/203 (18%), Positives = 71/203 (34%), Gaps = 3/203 (1%)

Query: 371 PVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIV 430
           P+      A     +          +         +G  Y  ++ +A+        + I 
Sbjct: 140 PIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAP---AVFIA 196

Query: 431 VNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDV 490
            NN  A + D      S    D A A   P + V+G D+ A  +V + A E  +      
Sbjct: 197 ENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPS 256

Query: 491 VVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEK 550
           +V+L  YR   H+  D+ S  +PK           +  ++  L       +E    ++E+
Sbjct: 257 LVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREE 316

Query: 551 VNRILSEEFVASKDYVPNRRDWL 573
           +   L      +++  P   +W+
Sbjct: 317 IRAELERGLKEAEEAGPVPPEWM 339
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395 Back     information, alignment and structure
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Length = 407 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query925
d1umda_362 Branched-chain alpha-keto acid dehydrogenase, PP m 100.0
d2bfda1395 Branched-chain alpha-keto acid dehydrogenase, PP m 100.0
d1qs0a_407 2-oxoisovalerate dehydrogenase (E1B), PP module {P 100.0
d2ozla1361 E1-beta subunit of pyruvate dehydrogenase (PP modu 100.0
d1w85a_365 Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st 100.0
d1w85b1192 Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d 100.0
d2bfdb1203 Branched-chain alpha-keto acid dehydrogenase, Pyr 100.0
d2ozlb1192 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 100.0
d1ik6a1191 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 100.0
d1qs0b1204 2-oxoisovalerate dehydrogenase (E1B), Pyr module { 99.98
d1umdb1186 Branched-chain alpha-keto acid dehydrogenase, Pyr 99.94
d2r8oa2331 Transketolase (TK), PP module {Escherichia coli [T 99.48
d1r9ja2336 Transketolase (TK), PP module {Leishmania mexicana 99.46
d1gpua1335 Transketolase (TK), PP module {Baker's yeast (Sacc 99.41
d1itza1338 Transketolase (TK), PP module {Maize (Zea mays) [T 99.3
d2djia3229 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 99.25
d2ez9a3228 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 99.03
d1ybha3208 Acetohydroxyacid synthase catalytic subunit {Thale 99.01
d1q6za3183 Benzoylformate decarboxylase {Pseudomonas putida [ 99.0
d2ihta3198 Carboxyethylarginine synthase {Streptomyces clavul 98.95
d1ozha3192 Catabolic acetolactate synthase {Klebsiella pneumo 98.88
d2ji7a3183 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 98.84
d2ieaa2415 Pyruvate dehydrogenase E1 component, PP module {Es 98.81
d1t9ba3227 Acetohydroxyacid synthase catalytic subunit {Baker 98.8
d1zpda3204 Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 98.72
d1pvda3196 Pyruvate decarboxylase {Baker's yeast (Saccharomyc 98.7
d1ovma3196 Indole-3-pyruvate decarboxylase {Enterobacter cloa 98.69
d1gpua2197 Transketolase (TK), Pyr module {Baker's yeast (Sac 97.28
d1itza2192 Transketolase (TK), Pyr module {Maize (Zea mays) [ 96.95
d2c42a2447 Pyruvate-ferredoxin oxidoreductase, PFOR, domains 96.68
d2r8oa1195 Transketolase (TK), Pyr module {Escherichia coli [ 96.45
d1r9ja1190 Transketolase (TK), Pyr module {Leishmania mexican 96.38
d2c42a1257 Pyruvate-ferredoxin oxidoreductase, PFOR, domain I 87.98
d2djia2184 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 81.41
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.6e-64  Score=559.30  Aligned_cols=315  Identities=17%  Similarity=0.170  Sum_probs=291.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---cccCccchHHHHHHHHHHHhhcCCCcEEEcCCccchHHHHH
Q 002419          228 PMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRF---GLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG  304 (925)
Q Consensus       228 ~~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krf---g~eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~HRgrln~La  304 (925)
                      .+.||+|+++++|+.|+++|.||+++..+|+++|+.   ++.||||+++|+.++|++.     .|+++ ++||+|+++|+
T Consensus        25 ~~~ls~e~l~~~yr~M~~~R~~ee~~~~l~~~g~~~~~~~~~GqEA~~vg~~~al~~~-----~D~~~-~~yR~h~~~la   98 (362)
T d1umda_          25 PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPG-----FDWVF-PYYRDHGLALA   98 (362)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTT-----TSEEE-CCTTTHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcceeeCCCCHHHHHHHHHHHcCCC-----CCeEE-eccccHHHHHH
Confidence            478999999999999999999999999999999874   3499999999999998751     39999 59999999999


Q ss_pred             HhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehhhhhhhhhc
Q 002419          305 NVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYS  384 (925)
Q Consensus       305 ~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~  384 (925)
                      +  |+|+.++|+|++|+.+|+++|+  |||    +|++ +.+.++          ++..++||+++|+|+|+|+|.|+++
T Consensus        99 ~--G~~~~~~~ae~~gk~~g~~~Gr--ggs----~H~~-~~~~~~----------~~~~~ivg~~~p~a~G~A~a~k~~~  159 (362)
T d1umda_          99 L--GIPLKELLGQMLATKADPNKGR--QMP----EHPG-SKALNF----------FTVASPIASHVPPAAGAAISMKLLR  159 (362)
T ss_dssp             H--TCCHHHHHHHHHTBTTCTTTTC--SCS----SCCC-BTTTTB----------CCCCSSTTTTHHHHHHHHHHHHHTT
T ss_pred             H--HhhHHHHHHHHhcccCCCcccc--ccc----cccc-ccccCc----------ccccccccccchHHHHHHHhhhccc
Confidence            9  9999999999999999998763  666    8996 666554          4455789999999999999999987


Q ss_pred             CCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccE
Q 002419          385 NDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPI  461 (925)
Q Consensus       385 ~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~  461 (925)
                      ++     .|+||++||||++ ||+||||||||   +||      +||||+||+||++|+.+.+++..+++++|++||+|+
T Consensus       160 ~~-----~v~v~~~GDGa~~-eG~f~Ealn~A~~~~lP------vifv~eNN~~aist~~~~~~~~~~~~~~a~~~gi~~  227 (362)
T d1umda_         160 TG-----QVAVCTFGDGATS-EGDWYAGINFAAVQGAP------AVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPG  227 (362)
T ss_dssp             CC-----CCEEEEEETGGGG-SHHHHHHHHHHHHTTCS------EEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCE
T ss_pred             cc-----ceeeeeccCCccc-CCchHHHHHHhhhccCC------eeeeeeecccccccccccccccchhhhhhhhheeee
Confidence            76     8999999999998 99999999999   999      999999999999999999998999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCC-CcCHHHHHHHHhCCCHHHHHHHHHHHcCCCC
Q 002419          462 FHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPS-FTQPKMYKIIRSHPSSLEIYQNKLLECQHVT  540 (925)
Q Consensus       462 ~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~-ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t  540 (925)
                      ++|||+|+++|+++++.|++++|+++||+|||+.|||+.||+++|++. ||+++|.+.|+ ++||+.+|+++|+++|++|
T Consensus       228 ~~vDGnDv~~v~~a~~~Ai~~~R~g~gP~lIE~~tyR~~gHs~~Dd~~~YR~~~Ei~~w~-~~DPi~~~~~~L~~~g~~s  306 (362)
T d1umda_         228 YLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWN  306 (362)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHH-TTCHHHHHHHHHHTTTCCC
T ss_pred             eEeccchHHHHHHHHHHHHHHHHhcCCCEEEEcccccccCCCccccchhhcchhhhHHHh-cCCHHHHHHHHHHHCCCCC
Confidence            999999999999999999999999999999999999999999999985 99999999996 6899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccCC
Q 002419          541 QEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSGF  580 (925)
Q Consensus       541 ~ee~~~i~~e~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~~  580 (925)
                      ++++++|+++++++|++++++|++.+ |++.+.++++|++.
T Consensus       307 e~e~~~i~~ei~~~V~~a~~~A~~~p~P~~~~l~~~VY~~~  347 (362)
T d1umda_         307 EEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAEK  347 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCBCCGGGGGTTSSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhcccCCC
Confidence            99999999999999999999999887 88888999998753
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure