Citrus Sinensis ID: 002431
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 922 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M8Y0 | 977 | Probable UDP-N-acetylgluc | yes | no | 0.997 | 0.941 | 0.861 | 0.0 | |
| P56558 | 1036 | UDP-N-acetylglucosamine-- | yes | no | 0.737 | 0.656 | 0.450 | 1e-171 | |
| Q8CGY8 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.737 | 0.650 | 0.450 | 1e-171 | |
| O15294 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.737 | 0.650 | 0.450 | 1e-171 | |
| P81436 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.737 | 0.650 | 0.450 | 1e-171 | |
| Q27HV0 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.737 | 0.650 | 0.450 | 1e-171 | |
| O18158 | 1151 | UDP-N-acetylglucosamine-- | yes | no | 0.740 | 0.593 | 0.449 | 1e-164 | |
| O82039 | 932 | Probable UDP-N-acetylgluc | N/A | no | 0.798 | 0.789 | 0.276 | 2e-79 | |
| Q8RVB2 | 931 | Probable UDP-N-acetylgluc | N/A | no | 0.799 | 0.791 | 0.276 | 3e-77 | |
| Q96301 | 914 | Probable UDP-N-acetylgluc | no | no | 0.845 | 0.853 | 0.272 | 7e-74 |
| >sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1 | Back alignment and function desciption |
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Score = 1704 bits (4412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 793/921 (86%), Positives = 862/921 (93%), Gaps = 1/921 (0%)
Query: 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
+ALAHQ+YK G +KQALEHSN VY+RNPLRTDNLLL+GAIYYQL +YDMCIARNEEALR+
Sbjct: 57 LALAHQLYKGGDFKQALEHSNMVYQRNPLRTDNLLLIGAIYYQLQEYDMCIARNEEALRI 116
Query: 63 EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
+P+FAECYGNMANAWKEKGD D AIRYYL+AIELRPNFADAWSNLASAYMRKGRL+EA Q
Sbjct: 117 QPQFAECYGNMANAWKEKGDTDRAIRYYLIAIELRPNFADAWSNLASAYMRKGRLSEATQ 176
Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 182
CC+QAL+LNPLLVDAHSNLGNLMKAQGL+ EAYSCYLEA+RIQPTFAIAWSNLAGLFMES
Sbjct: 177 CCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTFAIAWSNLAGLFMES 236
Query: 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGN 241
GDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALG P EAIMCYQ A+Q RPN A+AFGN
Sbjct: 237 GDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQMRPNSAMAFGN 296
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
+AS YYE+GQ D+AI +YKQA+ DPRFLEAYNNLGNALKD+GRVDEA++CYNQCL+LQP
Sbjct: 297 IASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGRVDEAVRCYNQCLALQP 356
Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
+HPQA+ NLGNIYMEWNM+ A+S +KATLAVTTGLSAPFNNLA+IYKQQGNY+DAISCY
Sbjct: 357 NHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYSDAISCY 416
Query: 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 421
NEVLRIDPLAAD LVNRGNTYKEIGRVT+AIQDY+ AI RPTMAEAHANLASAYKDSGH
Sbjct: 417 NEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHANLASAYKDSGH 476
Query: 422 VEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPS 481
VEAAI SYKQALLLRPDFPEATCNLLHTLQCVC WEDR +MF+EVE IIRRQ+NMSVLPS
Sbjct: 477 VEAAITSYKQALLLRPDFPEATCNLLHTLQCVCCWEDRSKMFAEVESIIRRQINMSVLPS 536
Query: 482 VQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGY 541
VQPFHAIAYPIDP+LALEISRKYA+HCSIIASRF LPPF HP +P++ +GG +RLR+GY
Sbjct: 537 VQPFHAIAYPIDPILALEISRKYAAHCSIIASRFGLPPFTHPAGLPVKREGGFKRLRIGY 596
Query: 542 VSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSS 601
VSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALS ND TEWRQR QSEAEHF+DVSAMSS
Sbjct: 597 VSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSANDNTEWRQRIQSEAEHFLDVSAMSS 656
Query: 602 DMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDE 661
D IAK+IN+DKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGA+YIDYLVTDE
Sbjct: 657 DAIAKIINQDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDE 716
Query: 662 FVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ 721
FVSPL+YAHIYSEKLVH+PHCYFVNDYKQKN DVLDPN +PKRSDYGLPEDKFIFACFNQ
Sbjct: 717 FVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNQDVLDPNSKPKRSDYGLPEDKFIFACFNQ 776
Query: 722 LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQ 781
LYKMDPEI NTWCNIL+RVPNSALWLLRFPAAGEMR R YA AQGVQPDQIIFTDVAMK
Sbjct: 777 LYKMDPEIVNTWCNILKRVPNSALWLLRFPAAGEMRFRTYAAAQGVQPDQIIFTDVAMKS 836
Query: 782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM 841
EHIRRS LAD+ LDTPLCN HTTGTD+LWAG+PMITLPLEKMATRVAGSLCLATGLG M
Sbjct: 837 EHIRRSVLADVILDTPLCNGHTTGTDVLWAGVPMITLPLEKMATRVAGSLCLATGLGHGM 896
Query: 842 IVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHC 901
IVNS++EYEE+AVSLAL++ KLQALT +L++ RLTCPLFDT RWVKNLERSYFKMW+LHC
Sbjct: 897 IVNSLEEYEEKAVSLALNKPKLQALTKELRASRLTCPLFDTMRWVKNLERSYFKMWNLHC 956
Query: 902 SGQKPQHFKVTENDLDFPCDR 922
SGQ+PQHFKV ENDL+FP DR
Sbjct: 957 SGQQPQHFKVLENDLEFPHDR 977
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O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: - |
| >sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1 | Back alignment and function description |
|---|
Score = 602 bits (1553), Expect = e-171, Method: Compositional matrix adjust.
Identities = 309/686 (45%), Positives = 430/686 (62%), Gaps = 6/686 (0%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
LAH+ Y++G ++ A H ++ + P T LLLL +I++Q D + A++ P
Sbjct: 17 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 76
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
AE Y N+ N +KE+G + AI +Y A+ L+P+F D + NLA+A + G + A Q
Sbjct: 77 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 136
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSNL +F G+
Sbjct: 137 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 196
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
+ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ PN A+ GNLA
Sbjct: 197 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 256
Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CYN L L P+H
Sbjct: 257 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 316
Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
+L NL NI E + A Y+ L V +A +NLA + +QQG +A+ Y E
Sbjct: 317 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 376
Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
+RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLAS +KDSG++
Sbjct: 377 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 436
Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q+ + LPSV
Sbjct: 437 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQLEKNRLPSVH 496
Query: 484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVS 543
P H++ YP+ I+ ++ + C + PP+ HP + + DG RLRVGYVS
Sbjct: 497 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS-DG---RLRVGYVS 552
Query: 544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
SDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF+D+S + +
Sbjct: 553 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 612
Query: 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA ++DY++TD+
Sbjct: 613 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 672
Query: 663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
SP A YSEKL ++PH +F+ D+
Sbjct: 673 TSPAEVAEQYSEKLAYMPHTFFIGDH 698
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Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2 | Back alignment and function description |
|---|
Score = 602 bits (1553), Expect = e-171, Method: Compositional matrix adjust.
Identities = 309/686 (45%), Positives = 430/686 (62%), Gaps = 6/686 (0%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
LAH+ Y++G ++ A H ++ + P T LLLL +I++Q D + A++ P
Sbjct: 27 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
AE Y N+ N +KE+G + AI +Y A+ L+P+F D + NLA+A + G + A Q
Sbjct: 87 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSNL +F G+
Sbjct: 147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
+ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ PN A+ GNLA
Sbjct: 207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266
Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CYN L L P+H
Sbjct: 267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326
Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
+L NL NI E + A Y+ L V +A +NLA + +QQG +A+ Y E
Sbjct: 327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386
Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
+RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLAS +KDSG++
Sbjct: 387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446
Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q+ + LPSV
Sbjct: 447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQLEKNRLPSVH 506
Query: 484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVS 543
P H++ YP+ I+ ++ + C + PP+ HP + + DG RLRVGYVS
Sbjct: 507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS-DG---RLRVGYVS 562
Query: 544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
SDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF+D+S + +
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622
Query: 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA ++DY++TD+
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682
Query: 663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
SP A YSEKL ++PH +F+ D+
Sbjct: 683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708
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Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3 | Back alignment and function description |
|---|
Score = 602 bits (1552), Expect = e-171, Method: Compositional matrix adjust.
Identities = 309/686 (45%), Positives = 430/686 (62%), Gaps = 6/686 (0%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
LAH+ Y++G ++ A H ++ + P T LLLL +I++Q D + A++ P
Sbjct: 27 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
AE Y N+ N +KE+G + AI +Y A+ L+P+F D + NLA+A + G + A Q
Sbjct: 87 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSNL +F G+
Sbjct: 147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
+ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ PN A+ GNLA
Sbjct: 207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266
Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CYN L L P+H
Sbjct: 267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326
Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
+L NL NI E + A Y+ L V +A +NLA + +QQG +A+ Y E
Sbjct: 327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386
Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
+RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLAS +KDSG++
Sbjct: 387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446
Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q+ + LPSV
Sbjct: 447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 506
Query: 484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVS 543
P H++ YP+ I+ ++ + C + PP+ HP + + DG RLRVGYVS
Sbjct: 507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS-DG---RLRVGYVS 562
Query: 544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
SDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF+D+S + +
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622
Query: 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA ++DY++TD+
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682
Query: 663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
SP A YSEKL ++PH +F+ D+
Sbjct: 683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708
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Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2 | Back alignment and function description |
|---|
Score = 602 bits (1551), Expect = e-171, Method: Compositional matrix adjust.
Identities = 309/686 (45%), Positives = 430/686 (62%), Gaps = 6/686 (0%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
LAH+ Y++G ++ A H ++ + P T LLLL +I++Q D + A++ P
Sbjct: 27 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
AE Y N+ N +KE+G + AI +Y A+ L+P+F D + NLA+A + G + A Q
Sbjct: 87 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSNL +F G+
Sbjct: 147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
+ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ PN A+ GNLA
Sbjct: 207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266
Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CYN L L P+H
Sbjct: 267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326
Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
+L NL NI E + A Y+ L V +A +NLA + +QQG +A+ Y E
Sbjct: 327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386
Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
+RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLAS +KDSG++
Sbjct: 387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446
Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q+ + LPSV
Sbjct: 447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 506
Query: 484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVS 543
P H++ YP+ I+ ++ + C + PP+ HP + + DG RLRVGYVS
Sbjct: 507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS-DG---RLRVGYVS 562
Query: 544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
SDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF+D+S + +
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622
Query: 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA ++DY++TD+
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682
Query: 663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
SP A YSEKL ++PH +F+ D+
Sbjct: 683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Oryctolagus cuniculus (taxid: 9986) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 602 bits (1551), Expect = e-171, Method: Compositional matrix adjust.
Identities = 309/686 (45%), Positives = 430/686 (62%), Gaps = 6/686 (0%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
LAH+ Y++G ++ A H ++ + P T LLLL +I++Q D + A++ P
Sbjct: 27 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
AE Y N+ N +KE+G + AI +Y A+ L+P+F D + NLA+A + G + A Q
Sbjct: 87 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSNL +F G+
Sbjct: 147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
+ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ PN A+ GNLA
Sbjct: 207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266
Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CYN L L P+H
Sbjct: 267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326
Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
+L NL NI E + A Y+ L V +A +NLA + +QQG +A+ Y E
Sbjct: 327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386
Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
+RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLAS +KDSG++
Sbjct: 387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446
Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q+ + LPSV
Sbjct: 447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 506
Query: 484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVS 543
P H++ YP+ I+ ++ + C + PP+ HP + + DG RLRVGYVS
Sbjct: 507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS-DG---RLRVGYVS 562
Query: 544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
SDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF+D+S + +
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622
Query: 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA ++DY++TD+
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682
Query: 663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
SP A YSEKL ++PH +F+ D+
Sbjct: 683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|O18158|OGT1_CAEEL UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase OS=Caenorhabditis elegans GN=ogt-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 579 bits (1493), Expect = e-164, Method: Compositional matrix adjust.
Identities = 310/690 (44%), Positives = 437/690 (63%), Gaps = 7/690 (1%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
LAH+ ++SG+Y +A ++ N V++ +P LLLL AI +Q + + + + A+++
Sbjct: 131 LAHRQFQSGNYVEAEKYCNLVFQSDPNNLPTLLLLSAINFQTKNLEKSMQYSMLAIKVNN 190
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
+ AE Y N+ N +KEKG + A+ Y +A++L+P F DA+ NLA+A + G L +A
Sbjct: 191 QCAEAYSNLGNYYKEKGQLQDALENYKLAVKLKPEFIDAYINLAAALVSGGDLEQAVTAY 250
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
AL +NP L S+LGNL+KA G ++EA CYL+A+ QP FA+AWSNL +F G+
Sbjct: 251 FNALQINPDLYCVRSDLGNLLKAMGRLEEAKVCYLKAIETQPQFAVAWSNLGCVFNSQGE 310
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
+ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ N A+ GNLA
Sbjct: 311 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVSAYLRALNLSGNHAVVHGNLA 370
Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
YYE+G D+AI YK+AI P F +AY NL NALK+ G V EA Q Y + L L P+H
Sbjct: 371 CVYYEQGLIDLAIDTYKKAIDLQPHFPDAYCNLANALKEKGSVVEAEQMYMKALELCPTH 430
Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
+ NL NI E + A Y L + +A +NLA I +QQG DAI Y E
Sbjct: 431 ADSQNNLANIKREQGKIEDATRLYLKALEIYPEFAAAHSNLASILQQQGKLNDAILHYKE 490
Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
+RI P AD N GNT KE+G + AI Y RAI I P A+AH+NLAS +KD+G++
Sbjct: 491 AIRIAPTFADAYSNMGNTLKEMGDSSAAIACYNRAIQINPAFADAHSNLASIHKDAGNMA 550
Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
AI+SY AL L+PDFP+A CNL H Q +C W D D+ ++ I+ Q+ LPSV
Sbjct: 551 EAIQSYSTALKLKPDFPDAYCNLAHCHQIICDWNDYDKRVRKLVQIVEDQLCKKRLPSVH 610
Query: 484 PFHAIAYPIDPMLALEISRKYASHC--SIIASRFALPPFNHPVPIPIRLDGGLRRLRVGY 541
P H++ YP+ + I+ K+AS C + P H ++ +G +RLR+GY
Sbjct: 611 PHHSMLYPLSHAARIAIAAKHASLCFDKVHVQMLGKTPLIHADRFSVQ-NG--QRLRIGY 667
Query: 542 VSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSS 601
VSSDFGNHP SHLM S+ GMH++ VEVFCYALS NDGT +R + +E+EHFVD+S +
Sbjct: 668 VSSDFGNHPTSHLMQSIPGMHDRSRVEVFCYALSVNDGTNFRSKLMNESEHFVDLSQIPC 727
Query: 602 D-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTD 660
+ A+ I +D I ILIN+NGYTKGARNEIFA++PAPIQV ++G+P T+GA+++DY++TD
Sbjct: 728 NGKAAEKIAQDGIHILINMNGYTKGARNEIFALRPAPIQVMWLGYPSTSGATFMDYIITD 787
Query: 661 EFVSPLRYAHIYSEKLVHVPHCYFVNDYKQ 690
SPLR A+ ++EKL ++PH +F+ D+ Q
Sbjct: 788 AVTSPLRLANAFTEKLAYMPHTFFIGDHAQ 817
|
Addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Caenorhabditis elegans (taxid: 6239) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (762), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 225/814 (27%), Positives = 363/814 (44%), Gaps = 78/814 (9%)
Query: 115 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF------ 168
GRL A + +A+ L+P A ++ G L K +G + EA Y +AL+ P++
Sbjct: 98 GRL--AFESFAEAIKLDPQNACALTHCGILYKDEGRLVEAAESYQKALKADPSYKPAAEC 155
Query: 169 -AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ 227
AI +++ +G+ +Q Y EA+K+ + AY NLG VY + A+ CY+
Sbjct: 156 LAIVLTDIGTSLKLAGNSQEGIQKYYEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYE 215
Query: 228 RAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR- 285
+A RP A A+ N+ Y RG + AI Y++ + P F A NN+ AL D+G
Sbjct: 216 KAAIERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
Query: 286 ------VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA 339
+++ + Y + L + A+ NLG Y E A +Y+ +
Sbjct: 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
Query: 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI 399
NNL VIYK + N A+ CY L I P + L N G Y G++ A +AI
Sbjct: 336 ACNNLGVIYKDRDNLDKAVECYQMALTIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAI 395
Query: 400 TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR 459
PT AEA+ NL Y+D+G++ AI++Y+Q L + PD A N L + + D
Sbjct: 396 IANPTYAEAYNNLGVLYRDAGNISLAIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGSD- 454
Query: 460 DRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPP 519
D+++ R + Q +++ DP
Sbjct: 455 DKLYEA-----HRDWGWRFMRLYQQYNSWDNSKDPE------------------------ 485
Query: 520 FNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCY-ALSPND 578
R+L +GYVS D+ H +S+ + + H+ N +V Y A+ D
Sbjct: 486 ---------------RQLVIGYVSPDYFTHSVSYFIEAPLAYHDYANYKVVIYSAVVKAD 530
Query: 579 G--TEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPA 636
+R + + + D+ + ++ +I EDK+ I+I L G+T + + A +PA
Sbjct: 531 AKTNRFRDKVLKKGGVWRDIYGIDEKKVSSMIREDKVDIMIELTGHTANNKLGMMACRPA 590
Query: 637 PIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVL 696
P+QV+++G+P TTG IDY +TD P + E+LV +P +
Sbjct: 591 PVQVTWIGYPNTTGLPTIDYRITDSMADPPSTKQKHVEELVRLPDSFLCY--------TP 642
Query: 697 DPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFP-AAGE 755
P P L F FN L K+ P++ W IL VP+S L + P
Sbjct: 643 SPEAGPVSPAPALTNGFVTFGSFNNLAKITPKVLQVWARILCAVPHSRLIVKCKPFGCDS 702
Query: 756 MRLRAYAVAQ--GVQPDQIIFTD-VAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAG 812
+R R ++ + G++P ++ + + +H++ SL D+ LDT TT + L+ G
Sbjct: 703 VRQRFLSILEQLGLEPQRVDLVPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMG 762
Query: 813 LPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKS 872
+P +T+ A V SL GL +++ + EY E A+ LA D L L L+
Sbjct: 763 VPCVTMGGSVHAHNVGVSLLKTVGL-RKLVARNEDEYVELAIQLASDVTSLSNLRMSLRE 821
Query: 873 VRLTCPLFDTARWVKNLERSYFKMWSLHCSGQKP 906
+ PL D A++ +NLE +Y MW +C G P
Sbjct: 822 LMAKSPLCDGAQFTQNLESTYRSMWRRYCDGDVP 855
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Petunia hybrida (taxid: 4102) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (743), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 225/815 (27%), Positives = 365/815 (44%), Gaps = 78/815 (9%)
Query: 115 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF------ 168
GRL A + +A+ ++P A ++ G L K +G + EA Y +AL+ P++
Sbjct: 98 GRL--AFESFSEAIKVDPQNACALTHCGILYKDEGRLVEAAESYEKALKADPSYTPAAEC 155
Query: 169 -AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ 227
AI +++ +G+ +Q Y EA+K+ + AY NLG VY + A+ CY+
Sbjct: 156 LAIVLTDIGTSLKLAGNTQEGIQKYYEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYE 215
Query: 228 RAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR- 285
+A RP A A+ N+ + RG + AI Y++ + P F A NN+ AL D+G
Sbjct: 216 KAALERPMYAEAYCNMGVIFKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
Query: 286 ------VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA 339
+++ + Y + L + A+ NLG Y E A +Y+ +
Sbjct: 276 VKLEGDINQGVAYYKKALCYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
Query: 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI 399
NNL VIYK + N A+ CY L I P + L N G Y G++ A +AI
Sbjct: 336 ACNNLGVIYKDRDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAI 395
Query: 400 TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR 459
PT AEA+ NL Y+D+G++ AI++Y+Q L + PD A N L + + D
Sbjct: 396 IANPTYAEAYNNLGVLYRDAGNISLAIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGTD- 454
Query: 460 DRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPP 519
D+++ RR + + YP +Y S
Sbjct: 455 DKLYEAHRDWGRRFMKL-------------YP-----------QYTSW------------ 478
Query: 520 FNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYAL---SP 576
N VP R L +GYVS D+ H +S+ + + H+ N +V Y+ +
Sbjct: 479 DNSKVP--------ERPLVIGYVSPDYFTHSVSYFIEAPLAHHDYTNYKVVVYSSVVKAD 530
Query: 577 NDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPA 636
+R + + + D+ + ++ +I EDK+ I++ L G+T + A +PA
Sbjct: 531 AKTNRFRDKVMKKGGLWRDIYGIDEKKVSSMIREDKVDIMVELTGHTANNKLGTMACRPA 590
Query: 637 PIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVL 696
P+QV+++G+P TTG IDY +TD P + E+LV +P+ +
Sbjct: 591 PVQVTWIGYPNTTGLPTIDYRITDAMADPPNAKQKHVEELVRLPNSFLCY--------TP 642
Query: 697 DPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFP-AAGE 755
P P L F FN L K+ P++ W IL VP+S L + P
Sbjct: 643 SPEAGPVCPAPALSNGFVTFGSFNNLAKITPKVLKVWARILSAVPHSRLIVKCKPFCCDS 702
Query: 756 MRLRAYAVAQ--GVQPDQI-IFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAG 812
+R R ++ + G++P ++ + + + +H++ SL D+ LDT TT + L+ G
Sbjct: 703 VRQRFLSILEQLGLEPQRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMG 762
Query: 813 LPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKS 872
+P +T+ A V SL GL E ++ + EY E A+ LA D L L L+
Sbjct: 763 VPCVTMGGSVHAHNVGVSLLKTVGL-ENLVARNEDEYVESAIQLASDVTSLSNLRMSLRE 821
Query: 873 VRLTCPLFDTARWVKNLERSYFKMWSLHCSGQKPQ 907
+ PL D A++ +N+E Y MW +C G P
Sbjct: 822 LMSKSPLCDGAKFTRNIESIYRSMWRRYCDGDVPS 856
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis thaliana GN=SPY PE=1 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (714), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 233/856 (27%), Positives = 360/856 (42%), Gaps = 76/856 (8%)
Query: 74 ANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPL 133
AN + + A+ Y +E +A + + N A C +A+ L+P
Sbjct: 50 ANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPH 109
Query: 134 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF-------AIAWSNLAGLFMESGDLN 186
A ++ G L K +G + EA Y +AL ++ AI ++L +G+
Sbjct: 110 NACALTHCGILHKEEGRLVEAAESYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQ 169
Query: 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLAST 245
+Q Y EA+K+ P + AY NLG VY + A+ CY++A RP A A+ N+
Sbjct: 170 EGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCNMGVI 229
Query: 246 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR-------VDEAIQCYNQCLS 298
Y RG +MAI Y++ + P F A NN+ AL D+G V + + Y + L
Sbjct: 230 YKNRGDLEMAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDVTQGVAYYKKALY 289
Query: 299 LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAI 358
+ A+ NLG Y E A +Y+ + NNL V+YK + N A+
Sbjct: 290 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVLYKDRDNLDKAV 349
Query: 359 SCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 418
CY L I P A L N G Y G++ A +AI PT AEA NL Y+D
Sbjct: 350 ECYQMALSIKPNFAQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAFNNLGVLYRD 409
Query: 419 SGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSV 478
+G++ AI +Y++ L + PD A N L + + D D++F R +
Sbjct: 410 AGNITMAIDAYEECLKIDPDSRNAGQNRLLAMNYINEGLD-DKLFEAHRDWGWRFTRLH- 467
Query: 479 LPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLR 538
P + + P P+ IS + F H V
Sbjct: 468 -PQYTSWDNLKDPERPITIGYISPDF---------------FTHSV-------------- 497
Query: 539 VGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCY-ALSPNDGTEWRQRTQSEAEHFV--D 595
S F PL+H H+ +V Y A+ D +R R + + V D
Sbjct: 498 -----SYFIEAPLTH--------HDYTKYKVVVYSAVVKADAKTYRFRDKVLKKGGVWKD 544
Query: 596 VSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYID 655
+ + IA ++ EDKI IL+ L G+T + A +PAP+QV+++G+P TTG +D
Sbjct: 545 IYGIDEKKIASMVREDKIDILVELTGHTANNKLGTMACRPAPVQVTWIGYPNTTGLPTVD 604
Query: 656 YLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFI 715
Y +TD P E+LV +P C+ P P L
Sbjct: 605 YRITDSLADPPDTKQKQVEELVRLPDCFLCY--------TPSPEAGPVCPTPALSNGFVT 656
Query: 716 FACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFP-AAGEMRLRAYAVAQ--GVQPDQI 772
F FN L K+ P++ W IL VPNS L + P +R R + G++ ++
Sbjct: 657 FGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSIRQRFLTTLEQLGLESKRV 716
Query: 773 -IFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSL 831
+ + +H++ SL D+ LDT TT + L+ G+P +T+ A V SL
Sbjct: 717 DLLPLILFNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL 776
Query: 832 CLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLER 891
GLG ++ + EY + +V LA D L L L+ + P+ + + LE
Sbjct: 777 LTKVGLG-HLVAKNEDEYVQLSVDLASDVTALSKLRMSLRDLMAGSPVCNGPSFAVGLES 835
Query: 892 SYFKMWSLHCSGQKPQ 907
+Y MW +C G+ P
Sbjct: 836 AYRNMWKKYCKGEVPS 851
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway and circadian clock. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Acts as a repressor of GA signaling pathway to inhibit hypocotyl elongation. Functions with GIGANTEA (GI) in pathways controlling flowering, circadian cotyledon movements and hypocotyl elongation. Acts as a light-regulated promoter of elongation via its interaction with GI. Acts as an activator of cytokinin signaling. Required with SEC for gamete and seed development. Its OGT activity has been proved in vitro but not in vivo. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 922 | ||||||
| 357441255 | 986 | O-linked GlcNAc transferase like protein | 1.0 | 0.935 | 0.895 | 0.0 | |
| 255562045 | 979 | o-linked n-acetylglucosamine transferase | 1.0 | 0.941 | 0.915 | 0.0 | |
| 356535232 | 988 | PREDICTED: probable UDP-N-acetylglucosam | 1.0 | 0.933 | 0.893 | 0.0 | |
| 224123642 | 923 | predicted protein [Populus trichocarpa] | 0.995 | 0.994 | 0.897 | 0.0 | |
| 225430656 | 986 | PREDICTED: probable UDP-N-acetylglucosam | 1.0 | 0.935 | 0.882 | 0.0 | |
| 449449593 | 975 | PREDICTED: probable UDP-N-acetylglucosam | 0.988 | 0.934 | 0.877 | 0.0 | |
| 297833104 | 977 | hypothetical protein ARALYDRAFT_896453 [ | 0.997 | 0.941 | 0.862 | 0.0 | |
| 15229253 | 977 | putative UDP-N-acetylglucosamine--peptid | 0.997 | 0.941 | 0.861 | 0.0 | |
| 224144666 | 873 | predicted protein [Populus trichocarpa] | 0.945 | 0.998 | 0.899 | 0.0 | |
| 242065108 | 1011 | hypothetical protein SORBIDRAFT_04g01956 | 0.998 | 0.910 | 0.821 | 0.0 |
| >gi|357441255|ref|XP_003590905.1| O-linked GlcNAc transferase like protein [Medicago truncatula] gi|355479953|gb|AES61156.1| O-linked GlcNAc transferase like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1779 bits (4607), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 827/923 (89%), Positives = 893/923 (96%), Gaps = 1/923 (0%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
+H+ LAHQMYKSGSYK+ALEHSN+VYERNPLRTDNLLLLGAIYYQLHD+DMC+A+NEEAL
Sbjct: 64 LHLTLAHQMYKSGSYKKALEHSNTVYERNPLRTDNLLLLGAIYYQLHDFDMCVAKNEEAL 123
Query: 61 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
R+EP FAECYGNMANAWKEKG+IDLAIRYYL+AIELRPNFADAWSNLASAYMRKGRL EA
Sbjct: 124 RIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEA 183
Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
AQCCRQALA+NPL+VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM
Sbjct: 184 AQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 243
Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAF 239
ESGD NRALQYYKEAVKLKP+FPDAYLNLGNVYKALGMPQEAI CYQ A+QTRPN +A+
Sbjct: 244 ESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAY 303
Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
GNLAS +YE+GQ DMAIL+YKQAI CDPRFLEAYNNLGNALKDVGRV+EAIQCYNQCLSL
Sbjct: 304 GNLASIHYEQGQLDMAILHYKQAIACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLSL 363
Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
QP+HPQALTNLGNIYMEWNM+ AAASYYKATL VTTGLSAP+NNLA+IYKQQGNYADAIS
Sbjct: 364 QPNHPQALTNLGNIYMEWNMVAAAASYYKATLNVTTGLSAPYNNLAIIYKQQGNYADAIS 423
Query: 360 CYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419
CYNEVLRIDPLAADGLVNRGNTYKEIGRV+DAIQDYIRAIT+RPTMAEAHANLASAYKDS
Sbjct: 424 CYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAITVRPTMAEAHANLASAYKDS 483
Query: 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVL 479
GHVEAA+KSY+QAL+LR DFPEATCNLLHTLQCVC WEDRD+MF EVEGIIRRQ+NMSVL
Sbjct: 484 GHVEAAVKSYRQALILRTDFPEATCNLLHTLQCVCCWEDRDQMFKEVEGIIRRQINMSVL 543
Query: 480 PSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRV 539
PSVQPFHAIAYP+DPMLALEISRKYA+HCS+IASRF+LPPF+HP PIPI+ +GG RLR+
Sbjct: 544 PSVQPFHAIAYPLDPMLALEISRKYAAHCSVIASRFSLPPFSHPAPIPIKQEGGYERLRI 603
Query: 540 GYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM 599
GYVSSDFGNHPLSHLMGSVFGMHN++NVEVFCYALSPNDGTEWRQR QSEAEHFVDVSAM
Sbjct: 604 GYVSSDFGNHPLSHLMGSVFGMHNRKNVEVFCYALSPNDGTEWRQRIQSEAEHFVDVSAM 663
Query: 600 SSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVT 659
+SD IAKLINEDKIQILINLNGYTKGARNEIFAM+PAP+QVSYMGFPGTTGA+YIDYLVT
Sbjct: 664 TSDTIAKLINEDKIQILINLNGYTKGARNEIFAMKPAPVQVSYMGFPGTTGATYIDYLVT 723
Query: 660 DEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACF 719
DEFVSPL+YAHIYSEK+VH+PHCYFVNDYKQKN DVLDPNCQPKRSDYGLPEDKF+FACF
Sbjct: 724 DEFVSPLQYAHIYSEKIVHLPHCYFVNDYKQKNQDVLDPNCQPKRSDYGLPEDKFLFACF 783
Query: 720 NQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM 779
NQLYKMDPEIFNTWCNIL+RVPNSALWLL+FPAAGEMRLRAYA AQGVQPDQIIFTDVAM
Sbjct: 784 NQLYKMDPEIFNTWCNILKRVPNSALWLLKFPAAGEMRLRAYAAAQGVQPDQIIFTDVAM 843
Query: 780 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGE 839
K EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPM+TLPLEKMATRVAGSLC++TGLGE
Sbjct: 844 KGEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGSLCISTGLGE 903
Query: 840 EMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899
EMIV+SMKEYE+RAVSLAL+R KLQALT+KLKSVRLTCPLFDT RWV+NL+R+YFKMW+L
Sbjct: 904 EMIVSSMKEYEDRAVSLALNRPKLQALTDKLKSVRLTCPLFDTNRWVRNLDRAYFKMWNL 963
Query: 900 HCSGQKPQHFKVTENDLDFPCDR 922
HC+GQ+PQHFKVTEND + P D+
Sbjct: 964 HCTGQRPQHFKVTENDNECPYDK 986
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562045|ref|XP_002522031.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] gi|223538835|gb|EEF40435.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1773 bits (4591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 845/923 (91%), Positives = 897/923 (97%), Gaps = 1/923 (0%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
MH+AL+HQ+YK+G+YKQALEHSN+VYER+PLRTDNLLLLGAIYYQLHDYDMCI +NEEAL
Sbjct: 57 MHLALSHQLYKAGNYKQALEHSNTVYERSPLRTDNLLLLGAIYYQLHDYDMCIEKNEEAL 116
Query: 61 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
RLEPRFAECYGNMANAWKEKGDIDLAIRYYL+AIELRPNFADAWSNLASAYMRKGRLNEA
Sbjct: 117 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLNEA 176
Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF+
Sbjct: 177 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFL 236
Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAF 239
ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY+ALGMPQEAI+CYQRAVQTRPN A+AF
Sbjct: 237 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYRALGMPQEAIVCYQRAVQTRPNYAVAF 296
Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
GNLASTYYERGQ D+AI +YKQAI CD RFLEAYNNLGNALKDVGRV+EAIQCYNQCL+L
Sbjct: 297 GNLASTYYERGQLDLAIHHYKQAIACDGRFLEAYNNLGNALKDVGRVEEAIQCYNQCLAL 356
Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
QPSHPQALTNLGNIYMEWNM AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS
Sbjct: 357 QPSHPQALTNLGNIYMEWNMASTAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 416
Query: 360 CYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419
CYNEVLRIDPLAADGLVNRGNTYKEIGRV+DAIQDYIRAITIRPTMAEAHANLASAYKDS
Sbjct: 417 CYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAITIRPTMAEAHANLASAYKDS 476
Query: 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVL 479
G VEAA+KSY+QAL+LRPDFPEATCNLLHTLQCVC WEDRD+MFSEVEGIIRRQ+ MSVL
Sbjct: 477 GRVEAAVKSYRQALVLRPDFPEATCNLLHTLQCVCCWEDRDKMFSEVEGIIRRQITMSVL 536
Query: 480 PSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRV 539
PSVQPFHAIAYPIDPMLAL+ISRKYA+HCSIIASRF LPPFNHP PIPIR D G RLR+
Sbjct: 537 PSVQPFHAIAYPIDPMLALDISRKYAAHCSIIASRFGLPPFNHPPPIPIRRDRGSERLRI 596
Query: 540 GYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM 599
GYVSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALSPNDGTEWRQR QSEAEHFV+VSAM
Sbjct: 597 GYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSPNDGTEWRQRIQSEAEHFVEVSAM 656
Query: 600 SSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVT 659
S+DMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGA+YIDYLVT
Sbjct: 657 SADMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVT 716
Query: 660 DEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACF 719
DEFVSP RY+HIYSEKLVH+PHCYFVNDYKQKN+DVLDP CQ KRSDYGLPEDKFIFACF
Sbjct: 717 DEFVSPTRYSHIYSEKLVHMPHCYFVNDYKQKNLDVLDPTCQHKRSDYGLPEDKFIFACF 776
Query: 720 NQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM 779
NQLYKMDPEIFNTWCNIL+RVPNSALWLLRFPAAGEMRLR+YAV+QGVQP+QIIFTDVAM
Sbjct: 777 NQLYKMDPEIFNTWCNILKRVPNSALWLLRFPAAGEMRLRSYAVSQGVQPEQIIFTDVAM 836
Query: 780 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGE 839
KQEHIRRS+LADLFLDTPLCNAHTTGTDILWAGLPM+TLPLEKMATRVAGSLCLATGLG+
Sbjct: 837 KQEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGSLCLATGLGD 896
Query: 840 EMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899
EMIV+SMKEYEE+AVSLAL+R KLQALTNKLK+VR+TCPLFDT RWV+NLER+YFKMW++
Sbjct: 897 EMIVSSMKEYEEKAVSLALNRPKLQALTNKLKAVRMTCPLFDTPRWVQNLERAYFKMWNI 956
Query: 900 HCSGQKPQHFKVTENDLDFPCDR 922
HCSGQ+PQHFKVTE+D +FP DR
Sbjct: 957 HCSGQQPQHFKVTEDDSEFPYDR 979
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535232|ref|XP_003536152.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1769 bits (4583), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 825/923 (89%), Positives = 887/923 (96%), Gaps = 1/923 (0%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
++++LAHQMYK+G+YKQALEHSN+VYERNPLRTDNLLLLGA+YYQLHD+DMC+A+NEEAL
Sbjct: 66 VYLSLAHQMYKTGNYKQALEHSNTVYERNPLRTDNLLLLGAVYYQLHDFDMCVAKNEEAL 125
Query: 61 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
R+EP FAECYGNMANAWKEKG+IDLAIRYYL+AIELRPNFADAWSNLASAYMRKGRL EA
Sbjct: 126 RIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEA 185
Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
AQCCRQALA+NPL+VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM
Sbjct: 186 AQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 245
Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAF 239
ESGD NRALQYYKEAVKLKP+FPDAYLNLGNVYKALGMPQEAI CYQ A+QTRPN +A+
Sbjct: 246 ESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHALQTRPNYGMAY 305
Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
GNLAS YYE+GQ DMAIL+YKQA+ CDPRFLEAYNNLGNALKDVGRV+EAIQCYNQCL+L
Sbjct: 306 GNLASIYYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLTL 365
Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
QP+HPQALTNLGNIYMEWNM+ AAA YYKATL VTTGLSAP+NNLA+IYKQQGNY DAIS
Sbjct: 366 QPNHPQALTNLGNIYMEWNMVAAAAQYYKATLNVTTGLSAPYNNLAIIYKQQGNYVDAIS 425
Query: 360 CYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419
CYNEVLRIDPLAADGLVNRGNTYKEIGRV+DAIQDYIRAI +RPTMAEAHANLASAYKDS
Sbjct: 426 CYNEVLRIDPLAADGLVNRGNTYKEIGRVSDAIQDYIRAIVVRPTMAEAHANLASAYKDS 485
Query: 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVL 479
GHVEAA+KSYKQAL+LRPDFPEATCNLLHTLQCVC WEDRD+MF EVE IIRRQ+NMSVL
Sbjct: 486 GHVEAAVKSYKQALILRPDFPEATCNLLHTLQCVCCWEDRDKMFKEVESIIRRQINMSVL 545
Query: 480 PSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRV 539
PSVQPFHAIAYP+DPMLALEISRKYA+HCS+IASRFALPPFNHP PIPI+ +GG RLR+
Sbjct: 546 PSVQPFHAIAYPLDPMLALEISRKYAAHCSVIASRFALPPFNHPSPIPIKREGGYERLRI 605
Query: 540 GYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM 599
GYVSSDFGNHPLSHLMGSVFGMHN++NVEVFCYALS NDGTEWRQR QSEAEHFVDVSAM
Sbjct: 606 GYVSSDFGNHPLSHLMGSVFGMHNRKNVEVFCYALSANDGTEWRQRIQSEAEHFVDVSAM 665
Query: 600 SSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVT 659
SSD IAK+INEDKI IL+NLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGA+YIDYLVT
Sbjct: 666 SSDAIAKMINEDKIHILVNLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVT 725
Query: 660 DEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACF 719
DEFVSPL YA+IYSEK+VH+PHCYFVNDYKQKN DVLDPNC KRSDYGLPEDKFIFACF
Sbjct: 726 DEFVSPLGYANIYSEKIVHLPHCYFVNDYKQKNQDVLDPNCPHKRSDYGLPEDKFIFACF 785
Query: 720 NQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM 779
NQLYKMDPEIFNTWCNIL+RVPNSALWLLRFPAAGEMRLRAYA AQGVQPDQIIFTDVA
Sbjct: 786 NQLYKMDPEIFNTWCNILKRVPNSALWLLRFPAAGEMRLRAYAAAQGVQPDQIIFTDVAT 845
Query: 780 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGE 839
K EHIRRSSLADLFLD+PLCNAHTTGTDILWAGLPM+TLPLEKMATRVAGSLCLATGLG+
Sbjct: 846 KNEHIRRSSLADLFLDSPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGSLCLATGLGD 905
Query: 840 EMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899
EMIV+SMKEYE+RAVSLAL+R KL+ALTNKLK+VRLTCPLFDTARWV+NLERSYFKMW+L
Sbjct: 906 EMIVSSMKEYEDRAVSLALNRPKLKALTNKLKAVRLTCPLFDTARWVRNLERSYFKMWNL 965
Query: 900 HCSGQKPQHFKVTENDLDFPCDR 922
HCSGQ+PQHFKVTENDL+ P DR
Sbjct: 966 HCSGQRPQHFKVTENDLECPYDR 988
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123642|ref|XP_002319130.1| predicted protein [Populus trichocarpa] gi|222857506|gb|EEE95053.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1757 bits (4551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 825/919 (89%), Positives = 882/919 (95%), Gaps = 1/919 (0%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
H+ LAHQ+YKSG+YKQALEHS+ VYER+P RTDNLLLLGAIYYQL DYDMCIA+NEEALR
Sbjct: 5 HLGLAHQLYKSGNYKQALEHSSVVYERSPQRTDNLLLLGAIYYQLQDYDMCIAKNEEALR 64
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
LEPRFAECYGNMANAWKEKGDIDLAIRYYLV+IELRPNFADAWSNLASAYMRKGRLNEA+
Sbjct: 65 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVSIELRPNFADAWSNLASAYMRKGRLNEAS 124
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
QCCRQAL LNP LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME
Sbjct: 125 QCCRQALTLNPHLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 184
Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240
SGDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALGMPQEAI+CYQ+AVQ RP A+AFG
Sbjct: 185 SGDLNRALQYYKEAVKLKPKFPDAYLNLGNVYKALGMPQEAIVCYQQAVQARPKYAMAFG 244
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
NLASTYYERGQ D+AIL+YKQAI CD RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ
Sbjct: 245 NLASTYYERGQLDLAILHYKQAIACDQRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 304
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
P+HPQALTNLGNIYMEWNM AAAS YKATLAVTTGLSAPF+NLAVIYKQQGNY+DAISC
Sbjct: 305 PNHPQALTNLGNIYMEWNMSAAAASCYKATLAVTTGLSAPFSNLAVIYKQQGNYSDAISC 364
Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
YNEVLRI+PLAADGLVNRGNTYKEIGRV++AIQDYI AITIRP MAEAHANLASAYKDSG
Sbjct: 365 YNEVLRIEPLAADGLVNRGNTYKEIGRVSEAIQDYINAITIRPNMAEAHANLASAYKDSG 424
Query: 421 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLP 480
HVEAAIKSY++ALLLR DFPEATCNLLHTLQCVC WEDRD+MF+EVEGIIRRQ++M+VLP
Sbjct: 425 HVEAAIKSYRKALLLRTDFPEATCNLLHTLQCVCCWEDRDKMFNEVEGIIRRQISMAVLP 484
Query: 481 SVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVG 540
SVQPFHAIAYPIDP+LALEISRKYA+HCSIIASRFALPPF HP P+ ++ + G RLR+G
Sbjct: 485 SVQPFHAIAYPIDPVLALEISRKYAAHCSIIASRFALPPFKHPAPLAVKHERGSGRLRIG 544
Query: 541 YVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS 600
YVSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALSPNDGTEWRQRTQ EAEHF+DVSAM+
Sbjct: 545 YVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSPNDGTEWRQRTQFEAEHFIDVSAMT 604
Query: 601 SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTD 660
SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGA+YIDYLVTD
Sbjct: 605 SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTD 664
Query: 661 EFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFN 720
EFVSP R++HIYSEKLVH+PHCYFVNDYKQKN+DVLDP CQ KRSDYGLPEDKFIFACFN
Sbjct: 665 EFVSPTRFSHIYSEKLVHLPHCYFVNDYKQKNLDVLDPTCQHKRSDYGLPEDKFIFACFN 724
Query: 721 QLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK 780
QLYKMDPEIFNTWCNIL+RVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK
Sbjct: 725 QLYKMDPEIFNTWCNILKRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK 784
Query: 781 QEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEE 840
QEHIRRS+LADLFLDTPLCNAHTTGTDILWAGLPM+T+PLEKMATRVAGSLCLATGLG+E
Sbjct: 785 QEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMVTMPLEKMATRVAGSLCLATGLGDE 844
Query: 841 MIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLH 900
MIV+SMKEYEERAVSLAL+R KLQ+LTN+LK+ R+TCPLFDT RWV+NL+R+YFKMWS+H
Sbjct: 845 MIVSSMKEYEERAVSLALNRPKLQSLTNRLKAARMTCPLFDTRRWVRNLDRAYFKMWSIH 904
Query: 901 CSGQKPQHFKVTENDLDFP 919
CSGQ+P HFKV END DFP
Sbjct: 905 CSGQQPHHFKVAENDFDFP 923
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430656|ref|XP_002270163.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Vitis vinifera] gi|296085167|emb|CBI28662.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1736 bits (4497), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 815/923 (88%), Positives = 890/923 (96%), Gaps = 1/923 (0%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
M +ALAHQ YK+G+YKQ+L+H N+VYERN LRTDNLLL+GAIYYQLHD+DMCIARNEEAL
Sbjct: 64 MLLALAHQSYKAGNYKQSLDHCNAVYERNSLRTDNLLLMGAIYYQLHDFDMCIARNEEAL 123
Query: 61 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
+++PRFAECYGNMANAWKEKG++DLAIRYYL+AIELRPNF DAWSNLASAYMRKGRLNEA
Sbjct: 124 QIDPRFAECYGNMANAWKEKGNVDLAIRYYLIAIELRPNFCDAWSNLASAYMRKGRLNEA 183
Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
AQCCRQALA+NPLLVDAHSNLGN MKAQGL+QEAYSCY+EALRIQP+FAIAWSNLAGLFM
Sbjct: 184 AQCCRQALAINPLLVDAHSNLGNFMKAQGLIQEAYSCYIEALRIQPSFAIAWSNLAGLFM 243
Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAF 239
ESGDL RALQYYKEAVKLKPTF DAYLNLGNVYKALGMPQEAI+CYQRA+QTRP A+A+
Sbjct: 244 ESGDLTRALQYYKEAVKLKPTFADAYLNLGNVYKALGMPQEAIVCYQRALQTRPEYAMAY 303
Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
GN+A TYYE+GQ DMAI++YKQAI CD FLEAYNNLGNALKDVGR+DEAIQCY+QCL+L
Sbjct: 304 GNMAGTYYEQGQMDMAIVHYKQAIECDSGFLEAYNNLGNALKDVGRIDEAIQCYHQCLAL 363
Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
QP+HPQALTNLGNIYMEWNM+ AAA+YYKATLAVTTGLSAPF+NLA+IYKQQGNYADAIS
Sbjct: 364 QPNHPQALTNLGNIYMEWNMVAAAATYYKATLAVTTGLSAPFSNLAIIYKQQGNYADAIS 423
Query: 360 CYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419
CYNEVLRIDPLAADGLVNRGNT+KEIGRV++AIQDYI AITIRPTMAEAHANLASAYKDS
Sbjct: 424 CYNEVLRIDPLAADGLVNRGNTFKEIGRVSEAIQDYIHAITIRPTMAEAHANLASAYKDS 483
Query: 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVL 479
GHVEAA+KSYKQAL+LRPDFPEATCNLLHTLQCVCSWEDR++MF EVEGIIRRQ+ MSVL
Sbjct: 484 GHVEAAVKSYKQALVLRPDFPEATCNLLHTLQCVCSWEDREKMFIEVEGIIRRQIKMSVL 543
Query: 480 PSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRV 539
PSVQPFHAIAYPIDP+LAL+ISRKYA+HCS+IASR+ALP FNHP P+P++ +GG RLR+
Sbjct: 544 PSVQPFHAIAYPIDPLLALDISRKYAAHCSLIASRYALPSFNHPNPVPVKSEGGSGRLRI 603
Query: 540 GYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM 599
GY+SSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALSPND TEWRQR QSEAEHF+DVSAM
Sbjct: 604 GYLSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSPNDSTEWRQRIQSEAEHFIDVSAM 663
Query: 600 SSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVT 659
SSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVT
Sbjct: 664 SSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVT 723
Query: 660 DEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACF 719
DEFVSPL YAHIYSEKLVH+PHCYFVNDYKQKN DVLDPNCQ KRSDYGLPEDKFIFACF
Sbjct: 724 DEFVSPLCYAHIYSEKLVHLPHCYFVNDYKQKNRDVLDPNCQHKRSDYGLPEDKFIFACF 783
Query: 720 NQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM 779
NQLYKMDPEIFNTWCNIL+RVPNSALWLLRFPAAGEMRLR+YAVAQG+QPD+IIFTDVAM
Sbjct: 784 NQLYKMDPEIFNTWCNILKRVPNSALWLLRFPAAGEMRLRSYAVAQGLQPDRIIFTDVAM 843
Query: 780 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGE 839
K EHIRRS+LADLFLDTPLCNAHTTGTDILWAGLPM+TLPLEKMATRVAGSLCLATGLGE
Sbjct: 844 KHEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGSLCLATGLGE 903
Query: 840 EMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899
EMIV+SMKEYEE+AVSLA++R KLQALTNKLK+VR++CPLFDTARWV+NLER+YFKMW++
Sbjct: 904 EMIVSSMKEYEEKAVSLAMNRPKLQALTNKLKAVRMSCPLFDTARWVRNLERAYFKMWNV 963
Query: 900 HCSGQKPQHFKVTENDLDFPCDR 922
HCSG +PQHFKV END+DFPCDR
Sbjct: 964 HCSGSRPQHFKVAENDVDFPCDR 986
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449593|ref|XP_004142549.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1707 bits (4421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 809/922 (87%), Positives = 869/922 (94%), Gaps = 11/922 (1%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
++ALAHQ YK+G YKQALEHS VYERN LRTDNLLL+GAIYYQL D+DMCIA+NEEALR
Sbjct: 64 YLALAHQKYKNGDYKQALEHSTLVYERNSLRTDNLLLMGAIYYQLSDFDMCIAKNEEALR 123
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
+EPRFAECYGNMANAWKEKG+IDLAIRYYL AIELRPNF DAWSNLASAYMRKGRL EAA
Sbjct: 124 IEPRFAECYGNMANAWKEKGNIDLAIRYYLHAIELRPNFCDAWSNLASAYMRKGRLGEAA 183
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
QCCRQALALNPLLVDAHSNLGNLMKAQG+VQEAYSCYLEALRIQPTFAIAWSNLAGLFME
Sbjct: 184 QCCRQALALNPLLVDAHSNLGNLMKAQGMVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 243
Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240
SGDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALGMPQEAI+CYQRA+Q RPN AIA+G
Sbjct: 244 SGDLNRALQYYKEAVKLKPQFPDAYLNLGNVYKALGMPQEAIVCYQRAIQMRPNYAIAYG 303
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
NLASTYYE+ Q DMAIL+YKQAI CDPRFLEAYNNLGNALK+ GRV+EAIQCYNQCL+LQ
Sbjct: 304 NLASTYYEQSQLDMAILHYKQAITCDPRFLEAYNNLGNALKEFGRVEEAIQCYNQCLALQ 363
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
PSHPQALTNLGNIYMEWNM+PAAASYYKATL VTTGLSAPFNNLA+IYKQQGNYADAISC
Sbjct: 364 PSHPQALTNLGNIYMEWNMVPAAASYYKATLRVTTGLSAPFNNLAIIYKQQGNYADAISC 423
Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
YNEVLRIDPLAADGLVNRGNTYKEIGRV++AIQDYIRAI IRPTMAEAHANLASAYKDSG
Sbjct: 424 YNEVLRIDPLAADGLVNRGNTYKEIGRVSEAIQDYIRAINIRPTMAEAHANLASAYKDSG 483
Query: 421 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLP 480
VEAAIKSYKQAL LRP+FPEATCNLLHTLQCVC+WEDRD+MF+EVEGII+RQ+NMSVLP
Sbjct: 484 LVEAAIKSYKQALHLRPEFPEATCNLLHTLQCVCNWEDRDKMFAEVEGIIKRQINMSVLP 543
Query: 481 SVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVG 540
SVQPFHAIAYPIDP+LALEISR YASHC IASRF+LP FNHP P+ I+ +GG RLR+G
Sbjct: 544 SVQPFHAIAYPIDPLLALEISRSYASHCLKIASRFSLPSFNHPSPVAIKRNGGFERLRIG 603
Query: 541 YVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS 600
YVSSDFGNHPLSHLMGSVFGMHN+E+VEVFCYALSPND TEWRQR Q EAEHFVDVS+M+
Sbjct: 604 YVSSDFGNHPLSHLMGSVFGMHNREHVEVFCYALSPNDNTEWRQRIQFEAEHFVDVSSMT 663
Query: 601 SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTD 660
SD+IAK+INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGA+YIDYLVTD
Sbjct: 664 SDVIAKMINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTD 723
Query: 661 EFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFN 720
EFVSPLRYAHIYSEK+VH+PHCYFVNDYKQ ++ LP+ KFIFACFN
Sbjct: 724 EFVSPLRYAHIYSEKIVHLPHCYFVNDYKQVICLLV----------LHLPQGKFIFACFN 773
Query: 721 QLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK 780
QLYKMDPEIFNTWCNIL+RVPNSALWLLRFPAAGEMRLRAYAVAQGVQP+QIIFTDVAMK
Sbjct: 774 QLYKMDPEIFNTWCNILKRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPEQIIFTDVAMK 833
Query: 781 QEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEE 840
EHIRRS+LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLG+E
Sbjct: 834 NEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGDE 893
Query: 841 MIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLH 900
MIV+SMKEYEE+AV+LAL+R KLQALTNKLK+VR+TCPLFDTARWV+NLERSYFKMW+LH
Sbjct: 894 MIVSSMKEYEEKAVTLALNRPKLQALTNKLKAVRMTCPLFDTARWVRNLERSYFKMWNLH 953
Query: 901 CSGQKPQHFKVTENDLDFPCDR 922
CSGQ PQHFKVTEN+L++P DR
Sbjct: 954 CSGQPPQHFKVTENNLEYPFDR 975
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297833104|ref|XP_002884434.1| hypothetical protein ARALYDRAFT_896453 [Arabidopsis lyrata subsp. lyrata] gi|297330274|gb|EFH60693.1| hypothetical protein ARALYDRAFT_896453 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1706 bits (4417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 794/921 (86%), Positives = 861/921 (93%), Gaps = 1/921 (0%)
Query: 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
+ALAHQ+YK G +KQALEHSN VY+RNPLRTDNLLL+GAIYYQL +YDMCIARNEEALR+
Sbjct: 57 LALAHQLYKGGDFKQALEHSNMVYQRNPLRTDNLLLIGAIYYQLQEYDMCIARNEEALRI 116
Query: 63 EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
+P+FAECYGNMANAWKEKGD D AIRYYL+AIELRPNFADAWSNLASAYMRKGR +EA Q
Sbjct: 117 QPQFAECYGNMANAWKEKGDTDRAIRYYLIAIELRPNFADAWSNLASAYMRKGRFSEATQ 176
Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 182
CC+QAL+LNPLLVDAHSNLGNLMKAQGL+ EAYSCYLEA+RIQPTFAIAWSNLAGLFMES
Sbjct: 177 CCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTFAIAWSNLAGLFMES 236
Query: 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGN 241
GDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALG P EAIMCYQ A+Q RPN A+AFGN
Sbjct: 237 GDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQMRPNCAMAFGN 296
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
+AS YYE+GQ D+AI +YKQAI DPRFLEAYNNLGNALKD+GRVDEAI+CYNQCL+LQP
Sbjct: 297 IASIYYEQGQLDLAIRHYKQAISRDPRFLEAYNNLGNALKDIGRVDEAIRCYNQCLALQP 356
Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
+HPQA+ NLGNIYMEWNM+ A+S +KATLAVTTGLSAPFNNLA+IYKQQGNY+DAISCY
Sbjct: 357 NHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYSDAISCY 416
Query: 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 421
NEVLRIDPLAAD LVNRGNTYKEIGRVT+AIQDY+ AI RPTMAEAHANLASAYKDSGH
Sbjct: 417 NEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHANLASAYKDSGH 476
Query: 422 VEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPS 481
VEAAI SYKQALLLRPDFPEATCNLLHTLQCVC WEDR +MF+EVE IIRRQ+NMSVLPS
Sbjct: 477 VEAAITSYKQALLLRPDFPEATCNLLHTLQCVCCWEDRSKMFAEVESIIRRQINMSVLPS 536
Query: 482 VQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGY 541
VQPFHAIAYPIDP+LALEISRKYA+HCSIIASRF LPPF HP +P++ +GG +RLR+GY
Sbjct: 537 VQPFHAIAYPIDPILALEISRKYAAHCSIIASRFGLPPFTHPAGLPVKREGGFKRLRIGY 596
Query: 542 VSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSS 601
VSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALS ND TEWRQR QSEAEHF+DVS+MSS
Sbjct: 597 VSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSANDNTEWRQRIQSEAEHFLDVSSMSS 656
Query: 602 DMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDE 661
D IAK+INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGA+YIDYLVTDE
Sbjct: 657 DAIAKIINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDE 716
Query: 662 FVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ 721
FVSPL+YAHIYSEKLVH+PHCYFVNDYKQKN DVLDPN +PKRSDYGLPEDKFIFACFNQ
Sbjct: 717 FVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNQDVLDPNSKPKRSDYGLPEDKFIFACFNQ 776
Query: 722 LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQ 781
LYKMDPEI NTWCNIL+RVPNSALWLLRFPAAGEMR R YA AQGVQ DQIIFTDVAMK
Sbjct: 777 LYKMDPEIVNTWCNILKRVPNSALWLLRFPAAGEMRFRTYAAAQGVQSDQIIFTDVAMKS 836
Query: 782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM 841
EHIRRS LAD+ LDTPLCN HTTGTD+LWAG+PMITLPLEKMATRVAGSLCLATGLG EM
Sbjct: 837 EHIRRSVLADVILDTPLCNGHTTGTDVLWAGVPMITLPLEKMATRVAGSLCLATGLGHEM 896
Query: 842 IVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHC 901
IVNS++EYEE+AVSLAL++ KLQALT +L++ RLTCPLFDT RWVKNLERSYFKMW+LHC
Sbjct: 897 IVNSLEEYEEKAVSLALNKPKLQALTKELRASRLTCPLFDTMRWVKNLERSYFKMWNLHC 956
Query: 902 SGQKPQHFKVTENDLDFPCDR 922
SGQ+PQHFKV ENDL+FP DR
Sbjct: 957 SGQQPQHFKVLENDLEFPHDR 977
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15229253|ref|NP_187074.1| putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Arabidopsis thaliana] gi|75336082|sp|Q9M8Y0.1|SEC_ARATH RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC; AltName: Full=Protein SECRET AGENT gi|6721161|gb|AAF26789.1|AC016829_13 putative O-linked GlcNAc transferase [Arabidopsis thaliana] gi|18139887|gb|AAL60196.1|AF441079_1 O-linked N-acetyl glucosamine transferase [Arabidopsis thaliana] gi|20259324|gb|AAM13988.1| putative O-linked GlcNAc transferase [Arabidopsis thaliana] gi|21436429|gb|AAM51415.1| putative O-linked GlcNAc transferase [Arabidopsis thaliana] gi|110742062|dbj|BAE98963.1| O-linked GlcNAc transferase like protein [Arabidopsis thaliana] gi|332640535|gb|AEE74056.1| putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1704 bits (4412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 793/921 (86%), Positives = 862/921 (93%), Gaps = 1/921 (0%)
Query: 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
+ALAHQ+YK G +KQALEHSN VY+RNPLRTDNLLL+GAIYYQL +YDMCIARNEEALR+
Sbjct: 57 LALAHQLYKGGDFKQALEHSNMVYQRNPLRTDNLLLIGAIYYQLQEYDMCIARNEEALRI 116
Query: 63 EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
+P+FAECYGNMANAWKEKGD D AIRYYL+AIELRPNFADAWSNLASAYMRKGRL+EA Q
Sbjct: 117 QPQFAECYGNMANAWKEKGDTDRAIRYYLIAIELRPNFADAWSNLASAYMRKGRLSEATQ 176
Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 182
CC+QAL+LNPLLVDAHSNLGNLMKAQGL+ EAYSCYLEA+RIQPTFAIAWSNLAGLFMES
Sbjct: 177 CCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTFAIAWSNLAGLFMES 236
Query: 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGN 241
GDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALG P EAIMCYQ A+Q RPN A+AFGN
Sbjct: 237 GDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQMRPNSAMAFGN 296
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
+AS YYE+GQ D+AI +YKQA+ DPRFLEAYNNLGNALKD+GRVDEA++CYNQCL+LQP
Sbjct: 297 IASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGRVDEAVRCYNQCLALQP 356
Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
+HPQA+ NLGNIYMEWNM+ A+S +KATLAVTTGLSAPFNNLA+IYKQQGNY+DAISCY
Sbjct: 357 NHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYSDAISCY 416
Query: 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 421
NEVLRIDPLAAD LVNRGNTYKEIGRVT+AIQDY+ AI RPTMAEAHANLASAYKDSGH
Sbjct: 417 NEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHANLASAYKDSGH 476
Query: 422 VEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPS 481
VEAAI SYKQALLLRPDFPEATCNLLHTLQCVC WEDR +MF+EVE IIRRQ+NMSVLPS
Sbjct: 477 VEAAITSYKQALLLRPDFPEATCNLLHTLQCVCCWEDRSKMFAEVESIIRRQINMSVLPS 536
Query: 482 VQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGY 541
VQPFHAIAYPIDP+LALEISRKYA+HCSIIASRF LPPF HP +P++ +GG +RLR+GY
Sbjct: 537 VQPFHAIAYPIDPILALEISRKYAAHCSIIASRFGLPPFTHPAGLPVKREGGFKRLRIGY 596
Query: 542 VSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSS 601
VSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALS ND TEWRQR QSEAEHF+DVSAMSS
Sbjct: 597 VSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSANDNTEWRQRIQSEAEHFLDVSAMSS 656
Query: 602 DMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDE 661
D IAK+IN+DKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGA+YIDYLVTDE
Sbjct: 657 DAIAKIINQDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDE 716
Query: 662 FVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ 721
FVSPL+YAHIYSEKLVH+PHCYFVNDYKQKN DVLDPN +PKRSDYGLPEDKFIFACFNQ
Sbjct: 717 FVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNQDVLDPNSKPKRSDYGLPEDKFIFACFNQ 776
Query: 722 LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQ 781
LYKMDPEI NTWCNIL+RVPNSALWLLRFPAAGEMR R YA AQGVQPDQIIFTDVAMK
Sbjct: 777 LYKMDPEIVNTWCNILKRVPNSALWLLRFPAAGEMRFRTYAAAQGVQPDQIIFTDVAMKS 836
Query: 782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM 841
EHIRRS LAD+ LDTPLCN HTTGTD+LWAG+PMITLPLEKMATRVAGSLCLATGLG M
Sbjct: 837 EHIRRSVLADVILDTPLCNGHTTGTDVLWAGVPMITLPLEKMATRVAGSLCLATGLGHGM 896
Query: 842 IVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHC 901
IVNS++EYEE+AVSLAL++ KLQALT +L++ RLTCPLFDT RWVKNLERSYFKMW+LHC
Sbjct: 897 IVNSLEEYEEKAVSLALNKPKLQALTKELRASRLTCPLFDTMRWVKNLERSYFKMWNLHC 956
Query: 902 SGQKPQHFKVTENDLDFPCDR 922
SGQ+PQHFKV ENDL+FP DR
Sbjct: 957 SGQQPQHFKVLENDLEFPHDR 977
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224144666|ref|XP_002325368.1| predicted protein [Populus trichocarpa] gi|222862243|gb|EEE99749.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1670 bits (4325), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 785/873 (89%), Positives = 837/873 (95%), Gaps = 1/873 (0%)
Query: 51 MCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110
MCIA+NEEALRL+PRFAECYGNMANAWKEKGDID AIRYYLV+IELRPNFADAWSNLASA
Sbjct: 1 MCIAKNEEALRLQPRFAECYGNMANAWKEKGDIDRAIRYYLVSIELRPNFADAWSNLASA 60
Query: 111 YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI 170
YMRKGRLNEA+QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP+FAI
Sbjct: 61 YMRKGRLNEASQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPSFAI 120
Query: 171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 230
AWSNLAGLFMESGDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALGMPQEAIMCYQRAV
Sbjct: 121 AWSNLAGLFMESGDLNRALQYYKEAVKLKPKFPDAYLNLGNVYKALGMPQEAIMCYQRAV 180
Query: 231 QTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEA 289
QTRPN A+AFGNLAST YERGQ ++AIL+YKQAI CD RFLEAYNNLGNALKDVGRVDEA
Sbjct: 181 QTRPNYAMAFGNLASTCYERGQVELAILHYKQAIACDQRFLEAYNNLGNALKDVGRVDEA 240
Query: 290 IQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYK 349
+QCYNQCLS+QP+HPQALTNLGNIYMEWNM AAAS YKATLAVTTGLSAPFNNLAVIYK
Sbjct: 241 LQCYNQCLSIQPNHPQALTNLGNIYMEWNMSAAAASCYKATLAVTTGLSAPFNNLAVIYK 300
Query: 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409
QQGNY+DAISCYNEVLRI+P+AADGLVNRGNTYKEIGRV++AIQDYI AI IRPTMAEAH
Sbjct: 301 QQGNYSDAISCYNEVLRIEPMAADGLVNRGNTYKEIGRVSEAIQDYIHAINIRPTMAEAH 360
Query: 410 ANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 469
ANLASAYKDSGHVEAAIKSY+QALLLRPDFPEATCNLLHTLQCVC WEDRD+MF EVEGI
Sbjct: 361 ANLASAYKDSGHVEAAIKSYRQALLLRPDFPEATCNLLHTLQCVCCWEDRDKMFDEVEGI 420
Query: 470 IRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIR 529
IRRQ++MSVLPSVQPFHAIAYPIDP+LALEIS KYA+HCSIIASRFAL PF HP P+P++
Sbjct: 421 IRRQISMSVLPSVQPFHAIAYPIDPVLALEISHKYAAHCSIIASRFALSPFKHPAPLPVK 480
Query: 530 LDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSE 589
+ G RLR+GYVSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALSPNDGTEWRQRTQ E
Sbjct: 481 HERGSGRLRIGYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSPNDGTEWRQRTQFE 540
Query: 590 AEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTT 649
AEHF+DVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTT
Sbjct: 541 AEHFIDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTT 600
Query: 650 GASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGL 709
GA+YIDYLVTDEFVSP R++HIYSEKLVH+PHCYFVNDYKQKN+DVLDP CQ KR DYGL
Sbjct: 601 GATYIDYLVTDEFVSPTRFSHIYSEKLVHLPHCYFVNDYKQKNLDVLDPTCQHKRLDYGL 660
Query: 710 PEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQP 769
PEDKFIFACFNQLYKMDPEIFNTWCNIL+RVPNSALWLLRFPAAGEMRLRAYAVAQGV P
Sbjct: 661 PEDKFIFACFNQLYKMDPEIFNTWCNILKRVPNSALWLLRFPAAGEMRLRAYAVAQGVNP 720
Query: 770 DQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAG 829
DQIIFTDVAMKQEHIRRS+LADLFLDTPLCNAHTTGTDILWAGLPM+T+PLEKMATRVAG
Sbjct: 721 DQIIFTDVAMKQEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMVTMPLEKMATRVAG 780
Query: 830 SLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNL 889
SLCLATGLG+EMIV+SMKEYEERAVSLAL++ KLQ+LTN+LK+ R+TCPLFDT RWV+NL
Sbjct: 781 SLCLATGLGDEMIVSSMKEYEERAVSLALNKPKLQSLTNRLKAFRMTCPLFDTKRWVRNL 840
Query: 890 ERSYFKMWSLHCSGQKPQHFKVTENDLDFPCDR 922
ER+YFKMW++HCSGQ+P HFKV END D P DR
Sbjct: 841 ERAYFKMWNIHCSGQQPHHFKVAENDFDCPYDR 873
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242065108|ref|XP_002453843.1| hypothetical protein SORBIDRAFT_04g019560 [Sorghum bicolor] gi|241933674|gb|EES06819.1| hypothetical protein SORBIDRAFT_04g019560 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 1609 bits (4166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 757/922 (82%), Positives = 841/922 (91%), Gaps = 1/922 (0%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
H+ALAHQ Y+SG Y++ALEH N VYE+N RTDNLLLLGAIYYQ+ +YDMCIA+NEEAL
Sbjct: 90 HLALAHQNYRSGKYREALEHGNVVYEKNARRTDNLLLLGAIYYQIRNYDMCIAKNEEALA 149
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
++P+FAECYGNMANAWKEKGDIDLAIRYYL AI+LRPNF DAWSNLASAY RKGRLNEAA
Sbjct: 150 IDPQFAECYGNMANAWKEKGDIDLAIRYYLTAIQLRPNFCDAWSNLASAYTRKGRLNEAA 209
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
QCCRQALA+NP LVDAHSNLGNLMKAQG +QEAYSCY+EALRI P FAIAWSNLAGLFME
Sbjct: 210 QCCRQALAINPRLVDAHSNLGNLMKAQGFIQEAYSCYIEALRIDPHFAIAWSNLAGLFME 269
Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240
+GDL++AL YYKEAVKLKP+F DAYLN GNVYKALGMPQ+AIMCYQRA+Q RP+ A+A+G
Sbjct: 270 AGDLDKALMYYKEAVKLKPSFADAYLNQGNVYKALGMPQDAIMCYQRALQARPDYAMAYG 329
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
NLA+ YYE+GQ DMAI Y QAI DP+F+EAYNN+GNALKD GRV+EAI CY CL+LQ
Sbjct: 330 NLATIYYEQGQLDMAIRCYNQAIVYDPQFVEAYNNMGNALKDAGRVEEAINCYRSCLALQ 389
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
+HPQALTNLGNIYMEW+M+ AAAS+YKA ++VT+GLS+P NNLAVIYKQQGNYADAI+C
Sbjct: 390 ANHPQALTNLGNIYMEWSMISAAASFYKAAISVTSGLSSPLNNLAVIYKQQGNYADAITC 449
Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
Y EVLRIDP AAD LVNRGNT+KEIGRV +AIQDY++A TIRP MAEAHANLASAYKDSG
Sbjct: 450 YTEVLRIDPTAADALVNRGNTFKEIGRVNEAIQDYVQAATIRPNMAEAHANLASAYKDSG 509
Query: 421 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLP 480
HVE AI SYKQAL LRPDFPEATCNLLHTLQCVC WE+RD MF +VE IIRRQ+ MSVLP
Sbjct: 510 HVETAIVSYKQALRLRPDFPEATCNLLHTLQCVCDWENRDAMFRDVEEIIRRQIKMSVLP 569
Query: 481 SVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVG 540
SVQPFHAIAYPIDPMLALEIS KYA+HCS+IASRF LPPF HP P+P++ +G RLRVG
Sbjct: 570 SVQPFHAIAYPIDPMLALEISCKYAAHCSLIASRFGLPPFVHPSPVPVKAEGKHCRLRVG 629
Query: 541 YVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS 600
YVSSDFGNHPLSHLMGSVFGMH++ N+EVFCYALS NDGTEWRQR QSEAEHFVDVSAM+
Sbjct: 630 YVSSDFGNHPLSHLMGSVFGMHDRANIEVFCYALSQNDGTEWRQRIQSEAEHFVDVSAMT 689
Query: 601 SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTD 660
SD IA+LIN+DKIQILINLNGYTKGARNEIFA+QPAPIQVSYMGFPGTTGA+YIDYLVTD
Sbjct: 690 SDNIARLINQDKIQILINLNGYTKGARNEIFALQPAPIQVSYMGFPGTTGAAYIDYLVTD 749
Query: 661 EFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFN 720
EFVSP RY+HIYSEKLVH+PHCYFVNDYKQKN D L P C KRSDYGLPEDKFIFACFN
Sbjct: 750 EFVSPSRYSHIYSEKLVHLPHCYFVNDYKQKNRDCLTPVCPHKRSDYGLPEDKFIFACFN 809
Query: 721 QLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK 780
QLYKMDPEIF+TWCNIL+RVPNSALWLLRFPAAGE R+RA+AVA+GV+ DQIIFTDVAMK
Sbjct: 810 QLYKMDPEIFDTWCNILKRVPNSALWLLRFPAAGETRVRAHAVARGVRSDQIIFTDVAMK 869
Query: 781 QEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEE 840
EHIRRS+LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC+ATGLGEE
Sbjct: 870 NEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCVATGLGEE 929
Query: 841 MIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLH 900
MIV+SMKEYE+RAV LAL+ KLQALTNKLK VR+TCPLFDTARWV+NLER+Y+KMW+L+
Sbjct: 930 MIVSSMKEYEDRAVDLALNPVKLQALTNKLKEVRMTCPLFDTARWVRNLERAYYKMWNLY 989
Query: 901 CSGQKPQHFKVTENDLDFPCDR 922
CS + P+ FKV E+D +FP DR
Sbjct: 990 CSSRHPEPFKVLEDDNEFPFDR 1011
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 922 | ||||||
| TAIR|locus:2103025 | 977 | SEC "secret agent" [Arabidopsi | 0.997 | 0.941 | 0.854 | 0.0 | |
| MGI|MGI:1339639 | 1046 | Ogt "O-linked N-acetylglucosam | 0.737 | 0.650 | 0.440 | 3.5e-213 | |
| UNIPROTKB|A5D7G1 | 1036 | OGT "OGT protein" [Bos taurus | 0.737 | 0.656 | 0.440 | 1.2e-212 | |
| UNIPROTKB|F1RSV2 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.737 | 0.650 | 0.440 | 1.2e-212 | |
| UNIPROTKB|P81436 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.737 | 0.650 | 0.440 | 1.2e-212 | |
| UNIPROTKB|O15294 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.737 | 0.650 | 0.440 | 1.5e-212 | |
| UNIPROTKB|F1NX56 | 1035 | OGT "Uncharacterized protein" | 0.737 | 0.657 | 0.441 | 1.5e-212 | |
| UNIPROTKB|E2QSQ5 | 1046 | OGT "Uncharacterized protein" | 0.737 | 0.650 | 0.440 | 2.4e-212 | |
| UNIPROTKB|Q27HV0 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.737 | 0.650 | 0.440 | 3.1e-212 | |
| RGD|62060 | 1036 | Ogt "O-linked N-acetylglucosam | 0.737 | 0.656 | 0.440 | 8.3e-212 |
| TAIR|locus:2103025 SEC "secret agent" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4255 (1502.9 bits), Expect = 0., P = 0.
Identities = 787/921 (85%), Positives = 852/921 (92%)
Query: 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
+ALAHQ+YK G +KQALEHSN VY+RNPLRTDNLLL+GAIYYQL +YDMCIARNEEALR+
Sbjct: 57 LALAHQLYKGGDFKQALEHSNMVYQRNPLRTDNLLLIGAIYYQLQEYDMCIARNEEALRI 116
Query: 63 EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
+P+FAECYGNMANAWKEKGD D AIRYYL+AIELRPNFADAWSNLASAYMRKGRL+EA Q
Sbjct: 117 QPQFAECYGNMANAWKEKGDTDRAIRYYLIAIELRPNFADAWSNLASAYMRKGRLSEATQ 176
Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 182
CC+QAL+LNPLLVDAHSNLGNLMKAQGL+ EAYSCYLEA+RIQPTFAIAWSNLAGLFMES
Sbjct: 177 CCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTFAIAWSNLAGLFMES 236
Query: 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGN 241
GDLNRALQYYKEAVKLKP FPDAYLNLGNVYKALG P EAIMCYQ A+Q RPN A+AFGN
Sbjct: 237 GDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQMRPNSAMAFGN 296
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
+AS YYE+GQ D+AI +YKQA+ DPRFLEAYNNLGNALKD+GRVDEA++CYNQCL+LQP
Sbjct: 297 IASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGRVDEAVRCYNQCLALQP 356
Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
+HPQA+ NLGNIYMEWNM+ A+S +KATLAVTTGLSAPFNNLA+IYKQQGNY+DAISCY
Sbjct: 357 NHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYSDAISCY 416
Query: 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 421
NEVLRIDPLAAD LVNRGNTYKEIGRVT+AIQDY+ AI RPTMAEAHANLASAYKDSGH
Sbjct: 417 NEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHANLASAYKDSGH 476
Query: 422 VEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPS 481
VEAAI SYKQALLLRPDFPEATCNLLHTLQCVC WEDR +MF+EVE IIRRQ+NMSVLPS
Sbjct: 477 VEAAITSYKQALLLRPDFPEATCNLLHTLQCVCCWEDRSKMFAEVESIIRRQINMSVLPS 536
Query: 482 VQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXY 541
VQPFHAIAYPIDP+LALEISRKYA+HCSIIASRF LPPF HP +P+ Y
Sbjct: 537 VQPFHAIAYPIDPILALEISRKYAAHCSIIASRFGLPPFTHPAGLPVKREGGFKRLRIGY 596
Query: 542 VSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSS 601
VSSDFGNHPLSHLMGSVFGMHN+ENVEVFCYALS ND TEWRQR QSEAEHF+DVSAMSS
Sbjct: 597 VSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSANDNTEWRQRIQSEAEHFLDVSAMSS 656
Query: 602 DMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDE 661
D IAK+IN+DKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGA+YIDYLVTDE
Sbjct: 657 DAIAKIINQDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDE 716
Query: 662 FVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ 721
FVSPL+YAHIYSEKLVH+PHCYFVNDYKQKN DVLDPN +PKRSDYGLPEDKFIFACFNQ
Sbjct: 717 FVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNQDVLDPNSKPKRSDYGLPEDKFIFACFNQ 776
Query: 722 LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQ 781
LYKMDPEI NTWCNIL+RVPNSALWLLRFPAAGEMR R YA AQGVQPDQIIFTDVAMK
Sbjct: 777 LYKMDPEIVNTWCNILKRVPNSALWLLRFPAAGEMRFRTYAAAQGVQPDQIIFTDVAMKS 836
Query: 782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM 841
EHIRRS LAD+ LDTPLCN HTTGTD+LWAG+PMITLPLEKMATRVAGSLCLATGLG M
Sbjct: 837 EHIRRSVLADVILDTPLCNGHTTGTDVLWAGVPMITLPLEKMATRVAGSLCLATGLGHGM 896
Query: 842 IVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHC 901
IVNS++EYEE+AVSLAL++ KLQALT +L++ RLTCPLFDT RWVKNLERSYFKMW+LHC
Sbjct: 897 IVNSLEEYEEKAVSLALNKPKLQALTKELRASRLTCPLFDTMRWVKNLERSYFKMWNLHC 956
Query: 902 SGQKPQHFKVTENDLDFPCDR 922
SGQ+PQHFKV ENDL+FP DR
Sbjct: 957 SGQQPQHFKVLENDLEFPHDR 977
|
|
| MGI|MGI:1339639 Ogt "O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1519 (539.8 bits), Expect = 3.5e-213, Sum P(2) = 3.5e-213
Identities = 302/686 (44%), Positives = 423/686 (61%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
LAH+ Y++G ++ A H ++ + P T LLLL +I++Q D + A++ P
Sbjct: 27 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
AE Y N+ N +KE+G + AI +Y A+ L+P+F D + NLA+A + G + A Q
Sbjct: 87 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSNL +F G+
Sbjct: 147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
+ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ PN A+ GNLA
Sbjct: 207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266
Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CYN L L P+H
Sbjct: 267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326
Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
+L NL NI E + A Y+ L V +A +NLA + +QQG +A+ Y E
Sbjct: 327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386
Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
+RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLAS +KDSG++
Sbjct: 387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446
Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q+ + LPSV
Sbjct: 447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQLEKNRLPSVH 506
Query: 484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVS 543
P H++ YP+ I+ ++ + C + PP+ HP + + YVS
Sbjct: 507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVG----YVS 562
Query: 544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
SDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF+D+S + +
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622
Query: 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA ++DY++TD+
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682
Query: 663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
SP A YSEKL ++PH +F+ D+
Sbjct: 683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708
|
|
| UNIPROTKB|A5D7G1 OGT "OGT protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1517 (539.1 bits), Expect = 1.2e-212, Sum P(2) = 1.2e-212
Identities = 302/686 (44%), Positives = 423/686 (61%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
LAH+ Y++G ++ A H ++ + P T LLLL +I++Q D + A++ P
Sbjct: 17 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 76
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
AE Y N+ N +KE+G + AI +Y A+ L+P+F D + NLA+A + G + A Q
Sbjct: 77 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 136
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSNL +F G+
Sbjct: 137 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 196
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
+ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ PN A+ GNLA
Sbjct: 197 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 256
Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CYN L L P+H
Sbjct: 257 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 316
Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
+L NL NI E + A Y+ L V +A +NLA + +QQG +A+ Y E
Sbjct: 317 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 376
Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
+RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLAS +KDSG++
Sbjct: 377 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 436
Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q+ + LPSV
Sbjct: 437 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 496
Query: 484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVS 543
P H++ YP+ I+ ++ + C + PP+ HP + + YVS
Sbjct: 497 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVG----YVS 552
Query: 544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
SDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF+D+S + +
Sbjct: 553 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 612
Query: 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA ++DY++TD+
Sbjct: 613 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 672
Query: 663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
SP A YSEKL ++PH +F+ D+
Sbjct: 673 TSPAEVAEQYSEKLAYMPHTFFIGDH 698
|
|
| UNIPROTKB|F1RSV2 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1517 (539.1 bits), Expect = 1.2e-212, Sum P(2) = 1.2e-212
Identities = 302/686 (44%), Positives = 423/686 (61%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
LAH+ Y++G ++ A H ++ + P T LLLL +I++Q D + A++ P
Sbjct: 27 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
AE Y N+ N +KE+G + AI +Y A+ L+P+F D + NLA+A + G + A Q
Sbjct: 87 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSNL +F G+
Sbjct: 147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
+ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ PN A+ GNLA
Sbjct: 207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266
Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CYN L L P+H
Sbjct: 267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326
Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
+L NL NI E + A Y+ L V +A +NLA + +QQG +A+ Y E
Sbjct: 327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386
Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
+RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLAS +KDSG++
Sbjct: 387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446
Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q+ + LPSV
Sbjct: 447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 506
Query: 484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVS 543
P H++ YP+ I+ ++ + C + PP+ HP + + YVS
Sbjct: 507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVG----YVS 562
Query: 544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
SDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF+D+S + +
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622
Query: 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA ++DY++TD+
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682
Query: 663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
SP A YSEKL ++PH +F+ D+
Sbjct: 683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708
|
|
| UNIPROTKB|P81436 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Oryctolagus cuniculus (taxid:9986)] | Back alignment and assigned GO terms |
|---|
Score = 1517 (539.1 bits), Expect = 1.2e-212, Sum P(2) = 1.2e-212
Identities = 302/686 (44%), Positives = 423/686 (61%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
LAH+ Y++G ++ A H ++ + P T LLLL +I++Q D + A++ P
Sbjct: 27 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
AE Y N+ N +KE+G + AI +Y A+ L+P+F D + NLA+A + G + A Q
Sbjct: 87 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSNL +F G+
Sbjct: 147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
+ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ PN A+ GNLA
Sbjct: 207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266
Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CYN L L P+H
Sbjct: 267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326
Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
+L NL NI E + A Y+ L V +A +NLA + +QQG +A+ Y E
Sbjct: 327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386
Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
+RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLAS +KDSG++
Sbjct: 387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446
Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q+ + LPSV
Sbjct: 447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 506
Query: 484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVS 543
P H++ YP+ I+ ++ + C + PP+ HP + + YVS
Sbjct: 507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVG----YVS 562
Query: 544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
SDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF+D+S + +
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622
Query: 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA ++DY++TD+
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682
Query: 663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
SP A YSEKL ++PH +F+ D+
Sbjct: 683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708
|
|
| UNIPROTKB|O15294 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1517 (539.1 bits), Expect = 1.5e-212, Sum P(2) = 1.5e-212
Identities = 302/686 (44%), Positives = 423/686 (61%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
LAH+ Y++G ++ A H ++ + P T LLLL +I++Q D + A++ P
Sbjct: 27 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
AE Y N+ N +KE+G + AI +Y A+ L+P+F D + NLA+A + G + A Q
Sbjct: 87 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSNL +F G+
Sbjct: 147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
+ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ PN A+ GNLA
Sbjct: 207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266
Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CYN L L P+H
Sbjct: 267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326
Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
+L NL NI E + A Y+ L V +A +NLA + +QQG +A+ Y E
Sbjct: 327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386
Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
+RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLAS +KDSG++
Sbjct: 387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446
Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q+ + LPSV
Sbjct: 447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 506
Query: 484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVS 543
P H++ YP+ I+ ++ + C + PP+ HP + + YVS
Sbjct: 507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVG----YVS 562
Query: 544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
SDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF+D+S + +
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622
Query: 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA ++DY++TD+
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682
Query: 663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
SP A YSEKL ++PH +F+ D+
Sbjct: 683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708
|
|
| UNIPROTKB|F1NX56 OGT "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1515 (538.4 bits), Expect = 1.5e-212, Sum P(2) = 1.5e-212
Identities = 303/686 (44%), Positives = 424/686 (61%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
LAH+ Y++G ++ A H ++ + P T LLLL +I++Q D + A++ P
Sbjct: 17 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 76
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
AE Y N+ N +KE+G + AI +Y A+ L+P+F D + NLA+A + G + A Q
Sbjct: 77 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 136
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSNL +F G+
Sbjct: 137 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 196
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
+ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ PN A+ GNLA
Sbjct: 197 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 256
Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA +CYN L L P+H
Sbjct: 257 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTH 316
Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
+L NL NI E + A Y+ L V +A +NLA + +QQG +A+ Y E
Sbjct: 317 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 376
Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
+RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLAS +KDSG++
Sbjct: 377 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 436
Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q+ + LPSV
Sbjct: 437 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 496
Query: 484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVS 543
P H++ YP+ I+ ++ + C + PP+ HP + YVS
Sbjct: 497 PHHSMLYPLSHSFRKAIAERHGNLCLDKINVLHKPPYEHPKDLK----ASEGRLRIGYVS 552
Query: 544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
SDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HFVD+S + +
Sbjct: 553 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFVDLSQIPCNG 612
Query: 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
A I++D I ILIN+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA ++DY++TD+
Sbjct: 613 KAADRIHQDGIHILINMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDKE 672
Query: 663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
SP+ A YSEKL ++P+ +F+ D+
Sbjct: 673 TSPVEVAEQYSEKLAYMPNTFFIGDH 698
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| UNIPROTKB|E2QSQ5 OGT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1517 (539.1 bits), Expect = 2.4e-212, Sum P(2) = 2.4e-212
Identities = 302/686 (44%), Positives = 423/686 (61%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
LAH+ Y++G ++ A H ++ + P T LLLL +I++Q D + A++ P
Sbjct: 27 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
AE Y N+ N +KE+G + AI +Y A+ L+P+F D + NLA+A + G + A Q
Sbjct: 87 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSNL +F G+
Sbjct: 147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
+ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ PN A+ GNLA
Sbjct: 207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266
Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CYN L L P+H
Sbjct: 267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326
Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
+L NL NI E + A Y+ L V +A +NLA + +QQG +A+ Y E
Sbjct: 327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386
Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
+RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLAS +KDSG++
Sbjct: 387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446
Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q+ + LPSV
Sbjct: 447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 506
Query: 484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVS 543
P H++ YP+ I+ ++ + C + PP+ HP + + YVS
Sbjct: 507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVG----YVS 562
Query: 544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
SDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF+D+S + +
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622
Query: 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA ++DY++TD+
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682
Query: 663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
SP A YSEKL ++PH +F+ D+
Sbjct: 683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708
|
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| UNIPROTKB|Q27HV0 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1517 (539.1 bits), Expect = 3.1e-212, Sum P(2) = 3.1e-212
Identities = 302/686 (44%), Positives = 423/686 (61%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
LAH+ Y++G ++ A H ++ + P T LLLL +I++Q D + A++ P
Sbjct: 27 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 86
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
AE Y N+ N +KE+G + AI +Y A+ L+P+F D + NLA+A + G + A Q
Sbjct: 87 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 146
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSNL +F G+
Sbjct: 147 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
+ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ PN A+ GNLA
Sbjct: 207 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 266
Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CYN L L P+H
Sbjct: 267 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 326
Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
+L NL NI E + A Y+ L V +A +NLA + +QQG +A+ Y E
Sbjct: 327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 386
Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
+RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLAS +KDSG++
Sbjct: 387 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 446
Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q+ + LPSV
Sbjct: 447 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 506
Query: 484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVS 543
P H++ YP+ I+ ++ + C + PP+ HP + + YVS
Sbjct: 507 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVG----YVS 562
Query: 544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
SDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF+D+S + +
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622
Query: 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA ++DY++TD+
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682
Query: 663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
SP A YSEKL ++PH +F+ D+
Sbjct: 683 TSPAEVAEQYSEKLAYMPHTFFIGDH 708
|
|
| RGD|62060 Ogt "O-linked N-acetylglucosamine (GlcNAc) transferase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1519 (539.8 bits), Expect = 8.3e-212, Sum P(2) = 8.3e-212
Identities = 302/686 (44%), Positives = 423/686 (61%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
LAH+ Y++G ++ A H ++ + P T LLLL +I++Q D + A++ P
Sbjct: 17 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 76
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
AE Y N+ N +KE+G + AI +Y A+ L+P+F D + NLA+A + G + A Q
Sbjct: 77 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 136
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSNL +F G+
Sbjct: 137 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 196
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
+ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ PN A+ GNLA
Sbjct: 197 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 256
Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CYN L L P+H
Sbjct: 257 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 316
Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
+L NL NI E + A Y+ L V +A +NLA + +QQG +A+ Y E
Sbjct: 317 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 376
Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
+RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLAS +KDSG++
Sbjct: 377 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 436
Query: 424 AAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQ 483
AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q+ + LPSV
Sbjct: 437 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQLEKNRLPSVH 496
Query: 484 PFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVS 543
P H++ YP+ I+ ++ + C + PP+ HP + + YVS
Sbjct: 497 PHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVG----YVS 552
Query: 544 SDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSD- 602
SDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF+D+S + +
Sbjct: 553 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 612
Query: 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662
A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA ++DY++TD+
Sbjct: 613 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 672
Query: 663 VSPLRYAHIYSEKLVHVPHCYFVNDY 688
SP A YSEKL ++PH +F+ D+
Sbjct: 673 TSPAEVAEQYSEKLAYMPHTFFIGDH 698
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M8Y0 | SEC_ARATH | 2, ., 4, ., 1, ., - | 0.8610 | 0.9978 | 0.9416 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.4.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.XIII.1801.1 | hypothetical protein (923 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 922 | |||
| COG3914 | 620 | COG3914, Spy, Predicted O-linked N-acetylglucosami | 1e-101 | |
| pfam13844 | 468 | pfam13844, Glyco_transf_41, Glycosyl transferase f | 1e-76 | |
| pfam13844 | 468 | pfam13844, Glyco_transf_41, Glycosyl transferase f | 8e-72 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-32 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-31 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 7e-29 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-28 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-27 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-25 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 8e-24 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-22 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-22 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-22 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-21 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-18 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-18 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-18 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-18 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-17 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-17 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-17 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 8e-17 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-16 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-15 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 7e-14 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-13 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-13 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 2e-13 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 5e-13 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 5e-12 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 8e-12 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-11 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 2e-11 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 7e-11 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 9e-11 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-10 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 1e-09 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 2e-09 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-09 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 7e-09 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 1e-08 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 1e-08 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-08 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-08 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 2e-08 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-08 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 6e-08 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 7e-08 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 1e-07 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 1e-07 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-07 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-07 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 3e-07 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 3e-07 | |
| PRK11447 | 1157 | PRK11447, PRK11447, cellulose synthase subunit Bcs | 3e-07 | |
| PRK11447 | 1157 | PRK11447, PRK11447, cellulose synthase subunit Bcs | 4e-07 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 7e-07 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-06 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 2e-06 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 3e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-06 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 4e-06 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 5e-06 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 7e-06 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 7e-06 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 1e-05 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 1e-05 | |
| TIGR03939 | 800 | TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g | 1e-05 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 1e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 1e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 1e-05 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 2e-05 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 2e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 2e-05 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 2e-05 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 3e-05 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 3e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 3e-05 | |
| COG2956 | 389 | COG2956, COG2956, Predicted N-acetylglucosaminyl t | 4e-05 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 5e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 6e-05 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 7e-05 | |
| smart01043 | 145 | smart01043, BTAD, Bacterial transcriptional activa | 8e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 9e-05 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 9e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 2e-04 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 2e-04 | |
| PLN03088 | 356 | PLN03088, PLN03088, SGT1, suppressor of G2 allele | 2e-04 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 2e-04 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 3e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 3e-04 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 3e-04 | |
| PRK11788 | 389 | PRK11788, PRK11788, tetratricopeptide repeat prote | 3e-04 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 3e-04 | |
| CHL00033 | 168 | CHL00033, ycf3, photosystem I assembly protein Ycf | 3e-04 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 4e-04 | |
| PRK11447 | 1157 | PRK11447, PRK11447, cellulose synthase subunit Bcs | 5e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 5e-04 | |
| TIGR03939 | 800 | TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g | 5e-04 | |
| PRK11788 | 389 | PRK11788, PRK11788, tetratricopeptide repeat prote | 5e-04 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 6e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 7e-04 | |
| TIGR00540 | 367 | TIGR00540, TPR_hemY_coli, heme biosynthesis-associ | 7e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.001 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 0.001 | |
| TIGR03939 | 800 | TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g | 0.001 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.001 | |
| PLN03088 | 356 | PLN03088, PLN03088, SGT1, suppressor of G2 allele | 0.001 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 0.001 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 0.002 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 0.002 | |
| TIGR03939 | 800 | TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g | 0.002 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 0.002 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 0.002 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.002 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.003 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.003 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 0.003 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 0.003 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 0.003 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 0.004 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 0.004 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 0.004 |
| >gnl|CDD|226428 COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 327 bits (841), Expect = e-101
Identities = 177/567 (31%), Positives = 268/567 (47%), Gaps = 31/567 (5%)
Query: 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR-AIT 400
L+++ + A L ++P + N + G A+ D A
Sbjct: 71 AFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEW 130
Query: 401 IRPTMAEAHANLASAYKDS------GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVC 454
+ P AE +L Y+ G A + ++A+ L P +P L+ Q C
Sbjct: 131 LSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQC 190
Query: 455 SWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASR 514
SW E +++ + F DP+ L I+ + S A
Sbjct: 191 SWP--------EEAPTNLLSQLALFLGIYGFSLAYLADDPLKNLAIANQLLKILSQNAP- 241
Query: 515 FALPPFNHPV-PIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYA 573
L F P+ I+ +G +RLRVGY+SSD +H + L+ VF H+++ EVF Y+
Sbjct: 242 -ELVRF--PIRDENIKRNG--KRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYS 296
Query: 574 LSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAM 633
L P ++R + E + + M IA I D I IL++L+G+T R ++FA
Sbjct: 297 LGPPHTDALQERISAAVEKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAH 356
Query: 634 QPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNM 693
+PAPIQVS++G+P TTG+ +DY ++D + P YSEKL +P CY D +
Sbjct: 357 RPAPIQVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLPQCYQPVDGFEPV- 415
Query: 694 DVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA 753
P R+ GLPED +F CFN +K+ PE+F W IL VPNS L L
Sbjct: 416 -----TPPPSRAQLGLPEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD 470
Query: 754 GEM--RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWA 811
E+ RLR A +GV +++ F A ++H R +ADL LDT HTT +D LW
Sbjct: 471 AEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPYGGHTTASDALWM 530
Query: 812 GLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLK 871
G+P++T E+ A+R S+ G+ E++ +S +Y E+AV+ DR Q + +LK
Sbjct: 531 GVPVLTRVGEQFASRNGASIATNAGI-PELVADSRADYVEKAVAFGSDRALRQQVRAELK 589
Query: 872 SVRLTCPLFDTARWVKNLERSYFKMWS 898
R T PLFD + + LE Y+ MWS
Sbjct: 590 RSRQTSPLFDPKAFARKLETLYWGMWS 616
|
Length = 620 |
| >gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41 | Back alignment and domain information |
|---|
Score = 257 bits (659), Expect = 1e-76
Identities = 101/194 (52%), Positives = 134/194 (69%), Gaps = 1/194 (0%)
Query: 704 RSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAV 763
R YGLP+D ++ FNQLYK+DP W NIL+RVPNS LWLLRFPA GE ++AYA
Sbjct: 276 RQQYGLPDDAIVYCNFNQLYKIDPSTLQMWVNILKRVPNSVLWLLRFPAVGEANIQAYAQ 335
Query: 764 AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM 823
G+ P +I+F++VA K+EH+RR LAD+ LDTPLCN HTTG D+LWAG PM+T+PLE +
Sbjct: 336 EMGLPPRRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPLETL 395
Query: 824 ATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTA 883
A+RVA S G E+I +EYE+ AV L DR+ L+ + K+ R + LF+T
Sbjct: 396 ASRVAASQLTTLGC-PELIAKDRQEYEDIAVKLGTDREYLRKIRAKVWKARTSSTLFNTK 454
Query: 884 RWVKNLERSYFKMW 897
++ ++LER Y KMW
Sbjct: 455 QYCQDLERLYLKMW 468
|
This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. Length = 468 |
| >gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41 | Back alignment and domain information |
|---|
Score = 244 bits (625), Expect = 8e-72
Identities = 92/155 (59%), Positives = 124/155 (80%), Gaps = 1/155 (0%)
Query: 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDV 596
LR+GYVSSDFGNHP SHLM S+ GMHN+ VEVFCYALSP+DGT +R + +E+EHFVD+
Sbjct: 1 LRIGYVSSDFGNHPTSHLMQSIPGMHNRSKVEVFCYALSPDDGTNFRSKVMAESEHFVDL 60
Query: 597 SAMSSD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYID 655
S + + A I++D I IL+N+NGYTKGARNEIFA++PAPIQV ++G+PGT+GA+++D
Sbjct: 61 SQIPCNGKAADRIHQDGIHILVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGATFMD 120
Query: 656 YLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQ 690
Y++TD SP+ A YSEKL ++PH +F+ D+ Q
Sbjct: 121 YIITDSVTSPMELADQYSEKLAYMPHTFFIGDHAQ 155
|
This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. Length = 468 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 2e-32
Identities = 101/410 (24%), Positives = 162/410 (39%), Gaps = 7/410 (1%)
Query: 27 ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLA 86
+ R D LL+L Y + +D +A ++ + +P A + + + KGD+ A
Sbjct: 427 DPELGRADLLLILS--YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKA 484
Query: 87 IRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146
+ A+ + P+F A +NLA +++G ++A Q + L ++P + A L L
Sbjct: 485 REAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544
Query: 147 AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAY 206
G +EA + +A + P LA ++ G L +AL EA P P+A+
Sbjct: 545 RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAW 604
Query: 207 LNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGC 265
L LG A G +A+ +++ + +P +A+A LA Y AI K+A+
Sbjct: 605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL 664
Query: 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 325
P EA L L R + A + P G++Y+ PAA
Sbjct: 665 KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQ 724
Query: 326 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385
Y+ L S L GN A+A+ L+ P A Y
Sbjct: 725 AYRKALK-RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQ 783
Query: 386 GRVTDAIQDYIRAITIRPTMAEAHANLASAY---KDSGHVEAAIKSYKQA 432
AI+ Y + P A NLA Y KD +E A ++ K A
Sbjct: 784 KDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAERALKLA 833
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 2e-31
Identities = 105/430 (24%), Positives = 174/430 (40%), Gaps = 1/430 (0%)
Query: 9 MYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAE 68
Y+ G+ +QA ++ N + + P LL +I +L D IA AL L+P
Sbjct: 305 EYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPA 364
Query: 69 CYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQAL 128
+ A+ GD + A Y A EL P A A + L + + +G +EA A
Sbjct: 365 ALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAA 424
Query: 129 ALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRA 188
L+P L A L G +A + + + QP A + L +++ GDL +A
Sbjct: 425 QLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKA 484
Query: 189 LQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI-AFGNLASTYY 247
+ +++A+ ++P F A NL + G P +AI +++ + P + A LA Y
Sbjct: 485 REAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544
Query: 248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
G + A+ + ++A +P+ +E L G++ +A+ N+ P P+A
Sbjct: 545 RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAW 604
Query: 308 TNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
LG + L A S +K LA+ + LA Y NYA AI+ L +
Sbjct: 605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL 664
Query: 368 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 427
P + + R A + P A Y AAI+
Sbjct: 665 KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQ 724
Query: 428 SYKQALLLRP 437
+Y++AL P
Sbjct: 725 AYRKALKRAP 734
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 7e-29
Identities = 108/439 (24%), Positives = 175/439 (39%), Gaps = 35/439 (7%)
Query: 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE 63
AL ++ +Y+ A E + P LLL GA YQL + + + L+
Sbjct: 268 ALVD--FQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA 325
Query: 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123
P + +A+ G +D AI A+ L P+ A S L AY+ G +AA+
Sbjct: 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEY 385
Query: 124 CRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183
+A L+P A + LG +QG EA + A ++ P A L ++ SG
Sbjct: 386 LAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSG 445
Query: 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLA 243
++AL A KL+ PD NA L
Sbjct: 446 QFDKAL---AAAKKLEKKQPD------------------------------NASLHNLLG 472
Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
+ Y +G A +++A+ +P F A NL G D+AIQ + + L++ P +
Sbjct: 473 AIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN 532
Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
+A+ L +Y+ A ++ + + P LA Y +G A++ NE
Sbjct: 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE 592
Query: 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423
P + + + G G + A+ + + + ++P A A LA AY +
Sbjct: 593 AADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYA 652
Query: 424 AAIKSYKQALLLRPDFPEA 442
AI S K+AL L+PD EA
Sbjct: 653 KAITSLKRALELKPDNTEA 671
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 1e-28
Identities = 109/475 (22%), Positives = 178/475 (37%), Gaps = 35/475 (7%)
Query: 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
+ LA + +A + V +P D LLL G + L + ++ +A +A+ L
Sbjct: 163 LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL 222
Query: 63 EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN-----------------FADAWS 105
P +A E G+ + A ++ ++ PN + DA
Sbjct: 223 RPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARE 282
Query: 106 NLASA-----------------YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148
L A + G L +A Q Q L P A L ++
Sbjct: 283 TLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRL 342
Query: 149 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN 208
G V EA + AL + P A S L ++ GD +A +Y +A +L P A
Sbjct: 343 GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQ 402
Query: 209 LGNVYKALGMPQEAIMCYQRAVQTRPNAIAFG-NLASTYYERGQADMAILYYKQAIGCDP 267
LG + G P EAI + A Q P L +Y GQ D A+ K+ P
Sbjct: 403 LGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQP 462
Query: 268 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYY 327
+N LG G + +A + + + LS++P A NL I ++ A +
Sbjct: 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF 522
Query: 328 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR 387
+ L + LA +Y + GN +A++ + ++P + + Y G+
Sbjct: 523 EKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ 582
Query: 388 VTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
+ A+ A P EA L A +G + A+ S+K+ L L+PD A
Sbjct: 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 4e-27
Identities = 107/461 (23%), Positives = 173/461 (37%), Gaps = 37/461 (8%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
+ L +SG + +AL + + ++ P LLGAIY D E+AL
Sbjct: 434 DLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALS 493
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR----- 116
+EP F N+A ++G+ D AI+ + + + P A LA Y+R G
Sbjct: 494 IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAV 553
Query: 117 --LNEAAQCCRQALALNPLLVDAHSNLGNLMKA--------------------------- 147
L +AA+ Q + L + G L KA
Sbjct: 554 AWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA 613
Query: 148 QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL 207
G + +A S + + L +QP A+A LA + + +A+ K A++LKP +A +
Sbjct: 614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673
Query: 208 NLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCD 266
L + A + A + + P A+ F Y + AI Y++A+
Sbjct: 674 GLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733
Query: 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASY 326
P A L AL G EA++ L P+ T L +Y+ A +
Sbjct: 734 PSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKH 792
Query: 327 YKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 386
Y+ + + NNLA +Y + + A+ L++ P L G E G
Sbjct: 793 YQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNIPAILDTLGWLLVEKG 851
Query: 387 RVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 427
A+ +A+ I P A +LA A +G A K
Sbjct: 852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-25
Identities = 106/442 (23%), Positives = 179/442 (40%), Gaps = 12/442 (2%)
Query: 13 GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL-EPRFAECYG 71
G Y A + + L LL Y + + L + AE
Sbjct: 70 GDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLA 129
Query: 72 NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
A+ G ++LA + Y A+ + P A LA + + R +EA + L +
Sbjct: 130 LRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD 189
Query: 132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 191
P VDA G+L+ + G ++ A + Y +A+ ++P LA + +E+G+ A ++
Sbjct: 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKH 249
Query: 192 YKEAVKLKPTFPDAYLNLGNVYKAL-----GMPQEAIMCYQRAVQTRPNAIAFGNLAS-T 245
+K P P L + KAL ++A Q A+++ P + LA +
Sbjct: 250 ADALLKKAPNSP-----LAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGAS 304
Query: 246 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 305
Y+ G + A Y Q + P +A L + +GRVDEAI + L L P P
Sbjct: 305 EYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPA 364
Query: 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVL 365
AL+ LG Y+ AA Y + +A L + QG+ ++AI+
Sbjct: 365 ALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAA 424
Query: 366 RIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA 425
++DP + +Y G+ A+ + +P A H L + Y G + A
Sbjct: 425 QLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKA 484
Query: 426 IKSYKQALLLRPDFPEATCNLL 447
+++++AL + PDF A NL
Sbjct: 485 REAFEKALSIEPDFFPAAANLA 506
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (253), Expect = 8e-24
Identities = 83/264 (31%), Positives = 129/264 (48%), Gaps = 10/264 (3%)
Query: 50 DMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN--FADAWSNL 107
E +L + G++ A+ A+EL PN A L
Sbjct: 6 LALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLL 65
Query: 108 ASAYMRKGRLNEAAQCCRQALA--LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 165
A A ++ GRL EA + +AL L P L +A NLG L++A G +EA +AL +
Sbjct: 66 ALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD 125
Query: 166 PTFAIAWSNLA-GLFMESGDLNRALQYYKEAVKLKPT---FPDAYLNLGNVYKALGMPQE 221
P +A + LA G E GD AL+ Y++A++L P +A L LG + +ALG +E
Sbjct: 126 PDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEE 185
Query: 222 AIMCYQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 279
A+ ++A++ P+ A A NL Y + G+ + A+ YY++A+ DP EA NL
Sbjct: 186 ALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALL 245
Query: 280 LKDVGRVDEAIQCYNQCLSLQPSH 303
L ++GR +EA++ + L L P
Sbjct: 246 LLELGRYEEALEALEKALELDPDL 269
|
Length = 291 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 1e-22
Identities = 38/96 (39%), Positives = 54/96 (56%)
Query: 140 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 199
NLGNL G EA Y +AL + P A A+ NLA + + G AL+ Y++A++L
Sbjct: 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64
Query: 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
P AY NLG Y LG +EA+ Y++A++ PN
Sbjct: 65 PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 1e-22
Identities = 39/100 (39%), Positives = 56/100 (56%)
Query: 68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127
E N+ N + + GD D A+ YY A+EL P+ ADA+ NLA+AY + G+ EA + +A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
L L+P A+ NLG G +EA Y +AL + P
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-22
Identities = 101/421 (23%), Positives = 152/421 (36%), Gaps = 20/421 (4%)
Query: 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLV 92
+ L+ Y Q + Y I + + AL+ +P AE + + GD A +
Sbjct: 22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRK 81
Query: 93 AIELRPNFADAWSNLASAYMRKGRLNEA--------AQCCRQALALNPLLVDAHSNLGNL 144
A+ L LA AY+ +G+ + A L L A+ LG L
Sbjct: 82 ALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQL 141
Query: 145 MKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 204
AQ Y +AL I P A LA L + + A E + P D
Sbjct: 142 ELAQ-------KSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVD 194
Query: 205 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIA-FGNLASTYYERGQADMAILYYKQAI 263
A L G++ +LG + A+ Y++A+ RPN IA LA+ E G+ + A + +
Sbjct: 195 ALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254
Query: 264 GCDPRFLEAYNNLGNALKDV--GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP 321
P A + AL D ++A + L P + AL G + L
Sbjct: 255 KKAPNSPLA--HYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312
Query: 322 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT 381
A Y L LA I + G +AI+ + L +DP L G
Sbjct: 313 QAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEA 372
Query: 382 YKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441
Y +G A + +A + P A A L + G AI + A L P+
Sbjct: 373 YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGR 432
Query: 442 A 442
A
Sbjct: 433 A 433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 4e-21
Identities = 41/100 (41%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 262
+A LNLGN+Y LG EA+ Y++A++ P NA A+ NLA+ YY+ G+ + A+ Y++A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302
+ DP +AY NLG A +G+ +EA++ Y + L L P+
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 2e-18
Identities = 40/99 (40%), Positives = 60/99 (60%)
Query: 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVA 93
+ LL LG +YY+L DYD + E+AL L+P A+ Y N+A A+ + G + A+ Y A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
+EL P+ A A+ NL AY + G+ EA + +AL L+P
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 2e-18
Identities = 39/98 (39%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 230
A NL L+ + GD + AL+YY++A++L P DAY NL Y LG +EA+ Y++A+
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 231 QTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDP 267
+ P NA A+ NL YY+ G+ + A+ Y++A+ DP
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.1 bits (211), Expect = 3e-18
Identities = 68/253 (26%), Positives = 108/253 (42%), Gaps = 9/253 (3%)
Query: 15 YKQALEHSNSVYERNPLRTDNLLL--LGAIYYQLHDYDMCIARNEEALR--LEPRFAECY 70
+ALE E P LL L +L + + E+AL L P AE
Sbjct: 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEAL 98
Query: 71 GNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLA-SAYMRKGRLNEAAQCCRQALA 129
N+ + G + A+ A+ L P+ A + LA A G EA + +AL
Sbjct: 99 LNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE 158
Query: 130 LNP---LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP-TFAIAWSNLAGLFMESGDL 185
L+P L +A LG L++A G +EA +AL++ P A A NL L+++ G
Sbjct: 159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218
Query: 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAST 245
AL+YY++A++L P +A NL + LG +EA+ ++A++ P+ G
Sbjct: 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALLL 278
Query: 246 YYERGQADMAILY 258
+
Sbjct: 279 LLAEALELLEKAD 291
|
Length = 291 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 4e-18
Identities = 33/100 (33%), Positives = 52/100 (52%)
Query: 102 DAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161
+A NL + Y + G +EA + +AL L+P DA+ NL G +EA Y +A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 201
L + P A A+ NL + + G AL+ Y++A++L P
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.1 bits (206), Expect = 1e-17
Identities = 71/284 (25%), Positives = 120/284 (42%), Gaps = 42/284 (14%)
Query: 144 LMKAQGLVQEAYSCYLEALRIQP--TFAIAWSNLAGLFMESGDLNRALQYYKEAVK--LK 199
L++ G + EA EAL + P A LA ++ G L AL+ ++A++ L
Sbjct: 32 LLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELL 91
Query: 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLA--STYYERGQADMAIL 257
P +A LNLG + +ALG +EA+ ++A+ P+ L YE G + A+
Sbjct: 92 PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALE 151
Query: 258 YYKQAIGCDP---RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314
Y++A+ DP EA LG L+ +GR +EA++ + L L P
Sbjct: 152 LYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD----------- 200
Query: 315 MEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG 374
+ NL ++Y + G Y +A+ Y + L +DP A+
Sbjct: 201 ----------------------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEA 238
Query: 375 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 418
L N E+GR +A++ +A+ + P + L +
Sbjct: 239 LYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAE 282
|
Length = 291 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 1e-17
Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 2/173 (1%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
A+ +A + E+GD+++A A+E P+ A+ LA Y + G L +A R+
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ--PTFAIAWSNLAGLFMESGD 184
AL LNP D +N G + QG ++A + +A+ P A + N +++GD
Sbjct: 91 ALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI 237
++A +Y A+++ P P++ L L +Y G ++A +R QT
Sbjct: 151 FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTA 203
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-17
Identities = 34/98 (34%), Positives = 58/98 (59%)
Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
NL +Y + G+Y +A+ Y + L +DP AD N Y ++G+ +A++DY +A+
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
+ P A+A+ NL AY G E A+++Y++AL L P+
Sbjct: 63 LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.8 bits (200), Expect = 8e-17
Identities = 72/266 (27%), Positives = 122/266 (45%), Gaps = 11/266 (4%)
Query: 184 DLNRALQYYKEAVKLKPTFPDAYLNLGN-VYKALGMPQEAIMCYQRAVQTRPN---AIAF 239
DL AL EA+ A L G + + LG EA+ + A++ PN A
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62
Query: 240 GNLASTYYERGQADMAILYYKQAIG--CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL 297
LA + G+ + A+ ++A+ P EA NLG L+ +G+ +EA++ + L
Sbjct: 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122
Query: 298 SLQPSHPQALTNLG-NIYMEWNMLPAAASYYKATLAVTTGLSAPFN---NLAVIYKQQGN 353
+L P A L E A Y+ L + L+ L + + G
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182
Query: 354 YADAISCYNEVLRIDP-LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412
Y +A+ + L+++P A+ L+N G Y ++G+ +A++ Y +A+ + P AEA NL
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNL 242
Query: 413 ASAYKDSGHVEAAIKSYKQALLLRPD 438
A + G E A+++ ++AL L PD
Sbjct: 243 ALLLLELGRYEEALEALEKALELDPD 268
|
Length = 291 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 1e-16
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
EA NLGN +G DEA++ Y + L L P + A NL Y + A Y+
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 369
L + + + NL + Y + G Y +A+ Y + L +DP
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-15
Identities = 32/93 (34%), Positives = 50/93 (53%)
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
NL + YY+ G D A+ YY++A+ DP +AY NL A +G+ +EA++ Y + L L
Sbjct: 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 333
P + +A NLG Y + A Y+ L +
Sbjct: 65 PDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 7e-14
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
L + YK G Y +ALE+ E +P D L A YY+L Y+ + E+AL L+P
Sbjct: 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99
A+ Y N+ A+ + G + A+ Y A+EL PN
Sbjct: 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.2 bits (175), Expect = 2e-13
Identities = 58/215 (26%), Positives = 95/215 (44%), Gaps = 9/215 (4%)
Query: 246 YYERGQADMAILYYKQAIGCDPR--FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ--P 301
G+ A+ ++A+ P L AL +GR++EA++ + L L+ P
Sbjct: 33 LELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLP 92
Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGLSAPFNNLAVIYKQQGNYADAISC 360
+ +AL NLG + A + LA+ A + G+Y +A+
Sbjct: 93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALEL 152
Query: 361 YNEVLRIDP---LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP-TMAEAHANLASAY 416
Y + L +DP A+ L+ G + +GR +A++ +A+ + P AEA NL Y
Sbjct: 153 YEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212
Query: 417 KDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
G E A++ Y++AL L PD EA NL L
Sbjct: 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLL 247
|
Length = 291 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.8 bits (174), Expect = 2e-13
Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 6/194 (3%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLG-AIYYQLHDYDMCIARNEEAL 60
+ L + G Y++ALE +P LL Y+L DY+ + E+AL
Sbjct: 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKAL 157
Query: 61 RLEP---RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN-FADAWSNLASAYMRKGR 116
L+P AE + + G + A+ A++L P+ A+A NL Y++ G+
Sbjct: 158 ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217
Query: 117 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT-FAIAWSNL 175
EA + +AL L+P +A NL L+ G +EA +AL + P + + + L
Sbjct: 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALL 277
Query: 176 AGLFMESGDLNRAL 189
L L +A
Sbjct: 278 LLLAEALELLEKAD 291
|
Length = 291 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 46/204 (22%), Positives = 74/204 (36%), Gaps = 35/204 (17%)
Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233
LA ++E GDL A + +A++ P AYL L Y+ LG ++A ++RA+
Sbjct: 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN 95
Query: 234 PNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293
PN D NN G L G+ ++A+Q +
Sbjct: 96 PN---------------NGD------------------VLNNYGTFLCQQGKYEQAMQQF 122
Query: 294 NQCLSLQ--PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 351
Q + P ++L N G ++ A Y L + LA +Y +
Sbjct: 123 EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR 182
Query: 352 GNYADAISCYNEVLRIDPLAADGL 375
G Y DA + + A+ L
Sbjct: 183 GQYKDARAYLERYQQTYNQTAESL 206
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-13
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG-RLNEAAQCCR 125
AE N+ NA + GD D AI Y A+EL P+ A+A+ NLA AY++ G EA +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 126 QALALNP 132
+AL L+P
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 5e-12
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 93 AIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ 152
A+E P++ A A Y + G + A + R+AL+L P D +N G + AQG +
Sbjct: 61 ALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPE 120
Query: 153 EAYSCYLEALRIQPTF---AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNL 209
EA + AL P + + NL +++G ++A +Y K A++L P FP A L L
Sbjct: 121 EAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLEL 179
Query: 210 GN 211
Sbjct: 180 AR 181
|
Length = 250 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 8e-12
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG-MPQEAIMCYQ 227
A A NL + GD + A++ Y++A++L P +AY NL Y LG +EA+ +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 228 RAVQTRP 234
+A++ P
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-11
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 375 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434
L+N GN Y ++G +A++ Y +A+ + P A+A+ NLA+AY G E A++ Y++AL
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 435 LRPDFPEATCNLLHTLQ 451
L PD +A NL
Sbjct: 63 LDPDNAKAYYNLGLAYY 79
|
Length = 100 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 2e-11
Identities = 64/293 (21%), Positives = 123/293 (41%), Gaps = 31/293 (10%)
Query: 119 EAAQCCRQALALNPL---LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNL 175
EAA+ +AL L L A + G +G EA + +++ + P ++
Sbjct: 312 EAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKR 371
Query: 176 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
A + +E GD ++A + + +A+KL PD Y + ++ G +A YQ+++ P+
Sbjct: 372 ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431
Query: 236 AI-AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
I + L T Y+ G ++ +++ P + YN G L D + DEAI+ ++
Sbjct: 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491
Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
+ L+ +YM N+LP KA +++ + ++
Sbjct: 492 TAIELE-------KETKPMYM--NVLPLIN---KALA---------------LFQWKQDF 524
Query: 355 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 407
+A + + L IDP + + G V +A++ + RA + T E
Sbjct: 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 7e-11
Identities = 44/189 (23%), Positives = 69/189 (36%), Gaps = 21/189 (11%)
Query: 255 AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314
A L K++ L A G+ DEA++ ++ QP +P L G+I
Sbjct: 294 ADLLAKRS---KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDIL 350
Query: 315 MEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG 374
+E N A K LA+ NLA + G +AI N L DP +G
Sbjct: 351 LEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNG 410
Query: 375 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL- 433
+ + + + + AEA A Y +G +E AI +A
Sbjct: 411 -------WDLLAQAYAELGN----------RAEALLARAEGYALAGRLEQAIIFLMRASQ 453
Query: 434 LLRPDFPEA 442
++ FP+
Sbjct: 454 QVKLGFPDW 462
|
Length = 484 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 9e-11
Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 8/174 (4%)
Query: 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 194
L QG ++ A +AL P +A+ LA + + G+L +A ++
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90
Query: 195 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERG 250
A+ L P D N G G ++A+ +++A++ P A + N + G
Sbjct: 91 ALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED-PLYPQPARSLENAGLCALKAG 149
Query: 251 QADMAILYYKQAIGCDPRFLEAYNNL---GNALKDVGRVDEAIQCYNQCLSLQP 301
D A Y +A+ DP+ E+ L ++ Y Q +
Sbjct: 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTA 203
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-10
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG-RVDEAIQCY 293
NA A NL + ++ G D AI Y++A+ DP EAY NL A +G +EA++
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 294 NQCLSLQP 301
+ L L P
Sbjct: 62 EKALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 1e-09
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG-RVTDAIQDYIRAI 399
NL + G+Y +AI Y + L +DP A+ N Y ++G +A++D +A+
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65
Query: 400 TIRP 403
+ P
Sbjct: 66 ELDP 69
|
Length = 69 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 6/155 (3%)
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
LA Y E+G ++A +A+ DP AY L + +G +++A + + L+L
Sbjct: 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN 95
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL----SAPFNNLAVIYKQQGNYAD 356
P++ L N G + + + A+ L + N + + G++
Sbjct: 96 PNNGDVLNNYGTFLCQ--QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK 153
Query: 357 AISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA 391
A L+IDP + L+ Y G+ DA
Sbjct: 154 AEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-09
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG-LVQEAYSCYL 159
A+A NL +A + G +EA + +AL L+P +A+ NL G +EA
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 160 EALRIQP 166
+AL + P
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 7e-09
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAA 324
EA NLGNAL +G DEAI+ Y + L L P + +A NL Y++ A
Sbjct: 4 EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEA 57
|
Length = 69 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 219
+AL P++ +A A + + G+ + A + Y++A+ L P D N G A G P
Sbjct: 60 KALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119
Query: 220 QEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNN 275
+EA+ ++RA+ P + NL + GQ D A Y K+A+ DP+F A
Sbjct: 120 EEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE 178
Query: 276 LGNALKDVGRVDEA 289
L G A
Sbjct: 179 LARLHYKAGDYAPA 192
|
Length = 250 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-08
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD-------AYLNLGNVYKALGM 218
P A A +NLA + GD + AL+ ++A++L + A NL +Y ALG
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 219 PQEAIMCYQRAVQTRPN 235
EA+ ++A+ R
Sbjct: 62 YDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-08
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG-DLNRALQYYKE 194
+A NLGN + G EA Y +AL + P A A+ NLA +++ G D AL+ ++
Sbjct: 4 EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63
Query: 195 AVKLKP 200
A++L P
Sbjct: 64 ALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-08
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG-HVEAAIKSYK 430
A+ L N GN ++G +AI+ Y +A+ + P AEA+ NLA AY G E A++ +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 431 QALLLRP 437
+AL L P
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 47/157 (29%), Positives = 66/157 (42%), Gaps = 2/157 (1%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
L Y Q DY E+AL +P + + A+ +++ G+ DLA Y A+ L P
Sbjct: 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP 100
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALN--PLLVDAHSNLGNLMKAQGLVQEAYS 156
N D +N + +GR EA Q +ALA D NLG G +A
Sbjct: 101 NNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE 160
Query: 157 CYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK 193
AL + P F A LA L ++GD A Y +
Sbjct: 161 YLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197
|
Length = 250 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-08
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 97 RPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL-------NPLLVDAHSNLGNLMKAQG 149
P+ A A +NLA R G +EA + +AL L +P A +NL L A G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 150 LVQEAYSCYLEALRIQP 166
EA +AL ++
Sbjct: 61 DYDEALEYLEKALALRE 77
|
Length = 78 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 6e-08
Identities = 46/213 (21%), Positives = 97/213 (45%), Gaps = 8/213 (3%)
Query: 58 EALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRL 117
+++ L+PR + Y A+ E GD D A + A++L D + + A + KG
Sbjct: 356 KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEF 415
Query: 118 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAG 177
+A + ++++ L+P + +H LG +G + + + + + P ++
Sbjct: 416 AQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGE 475
Query: 178 LFMESGDLNRALQYYKEAVKLKPTFPDAYLN-LGNVYKALGMPQ------EAIMCYQRAV 230
L ++ + A++ + A++L+ Y+N L + KAL + Q EA ++A+
Sbjct: 476 LLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL 535
Query: 231 QTRPNA-IAFGNLASTYYERGQADMAILYYKQA 262
P IA +A ++G D A+ +++A
Sbjct: 536 IIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 7e-08
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRI-------DPLAADGLVNRGNTYKEIGRVTDAIQ 393
NNLA++ ++ G+Y +A+ + L + P A L N Y +G +A++
Sbjct: 8 LNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALE 67
Query: 394 DYIRAITIRP 403
+A+ +R
Sbjct: 68 YLEKALALRE 77
|
Length = 78 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 3/163 (1%)
Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
A A LA Y+++G +A + +AL +P AH + + G A Y +
Sbjct: 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRK 94
Query: 161 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK--PTFPDAYLNLGNVYKALGM 218
AL + P +N G A+Q ++ A+ D NLG G
Sbjct: 95 ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ 154
Query: 219 PQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYK 260
+A +RA++ P A LA +Y+ G A LY +
Sbjct: 155 FDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197
|
Length = 250 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 1/134 (0%)
Query: 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 212
EA + QP + +E+ A++ K+A+ L P P LNL
Sbjct: 324 EALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383
Query: 213 YKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE 271
G PQEAI R + P + + LA Y E G A+L + R +
Sbjct: 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQ 443
Query: 272 AYNNLGNALKDVGR 285
A L A + V
Sbjct: 444 AIIFLMRASQQVKL 457
|
Length = 484 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-07
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERG-QADMAILYYK 260
+A NLGN LG EAI Y++A++ P NA A+ NLA Y + G + A+ +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 261 QAIGCDP 267
+A+ DP
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 26/103 (25%)
Query: 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYY 259
P A NL V + LG EA+ ++A++
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALE--------------------------LA 35
Query: 260 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302
++ P A NNL +G DEA++ + L+L+ +
Sbjct: 36 RELGEDHPETARALNNLARLYLALGDYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-07
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELR-------PNFADAWSNLASAYMRKGR 116
P A N+A + GD D A+ A+EL P A A +NLA Y+ G
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 117 LNEAAQCCRQALALNP 132
+EA + +ALAL
Sbjct: 62 YDEALEYLEKALALRE 77
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-07
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ----PSHPQ---ALTNLGNIYMEWN 318
P A NNL L+ +G DEA++ + L L HP+ AL NL +Y+
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 319 MLPAAASYYKATLAV 333
A Y + LA+
Sbjct: 61 DYDEALEYLEKALAL 75
|
Length = 78 |
| >gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 83/399 (20%), Positives = 147/399 (36%), Gaps = 67/399 (16%)
Query: 93 AIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ 152
A+ P ++A L AY ++G A +ALAL D HS+ N K + L++
Sbjct: 295 AVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL-----DPHSS--NRDKWESLLK 347
Query: 153 ---------------------EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 191
+A Y +A ++ T + A L + M D A +Y
Sbjct: 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERY 407
Query: 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY--------QRAVQTRPNAIAFGNL- 242
Y++A+++ P +A L N+Y+ P++A + + +R++ ++ L
Sbjct: 408 YQQALRMDPGNTNAVRGLANLYRQQS-PEKA-LAFIASLSASQRRSIDDIERSLQNDRLA 465
Query: 243 --ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
A +G+ A +Q + DP + L L+ G+ +A + +
Sbjct: 466 QQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT------TGLSAPFNNLAVI-----YK 349
P+ P+ + G +Y+ + AA + TL L+ + V+ +
Sbjct: 526 PNDPEQVYAYG-LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584
Query: 350 QQGNYADAISCYNE---VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA 406
G A+A + + RID AD RG+ A Y R +T P A
Sbjct: 585 DSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDY-------AAARAAYQRVLTREPGNA 637
Query: 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCN 445
+A L G + AA + L P + N
Sbjct: 638 DARLGLIEVDIAQGDLAAA----RAQLAKLPATANDSLN 672
|
Length = 1157 |
| >gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-07
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 17/151 (11%)
Query: 217 GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDP-------- 267
G +AI Q+AV+ P + A G L Y ++G A+ +++A+ DP
Sbjct: 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342
Query: 268 -------RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320
R+ ALK + +A + Y Q + + A+ LG++ M
Sbjct: 343 ESLLKVNRYWLLIQQGDAALK-ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDY 401
Query: 321 PAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 351
AA YY+ L + G + LA +Y+QQ
Sbjct: 402 AAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432
|
Length = 1157 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 7e-07
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG-DIDLAIRYYLV 92
+ L LG ++L DYD I E+AL L+P AE Y N+A A+ + G D + A+
Sbjct: 4 EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63
Query: 93 AIELRP 98
A+EL P
Sbjct: 64 ALELDP 69
|
Length = 69 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-06
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE-------PRFAECYGNMANAWKEKG 81
+P L L + +L DYD + E+AL L P A N+A + G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 82 DIDLAIRYYLVAIELRPN 99
D D A+ Y A+ LR
Sbjct: 61 DYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
A A NL +AY++ G+ +EA + +AL LNP
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNP 32
|
Length = 34 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 3e-06
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
+A NLGNA +G+ DEA++ Y + L L P++
Sbjct: 2 KALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 4e-06
Identities = 47/216 (21%), Positives = 75/216 (34%), Gaps = 15/216 (6%)
Query: 243 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302
A +Y ++ + AI+ K A+ DP EA LG +G A + + LSL
Sbjct: 29 AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP 88
Query: 303 HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA-PFNNLAVI-------YKQQGNY 354
Q L L Y+ ++ L G + A + Y G
Sbjct: 89 KNQVLPLLARAYL-------LQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQL 141
Query: 355 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414
A Y + L IDP + + R +A +T P +A
Sbjct: 142 ELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD 201
Query: 415 AYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450
G++E A+ +Y++A+ LRP+ L L
Sbjct: 202 LLLSLGNIELALAAYRKAIALRPNNIAVLLALATIL 237
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-06
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 368 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-------PTMAEAHANLASAYKDSG 420
P A L N + +G +A++ +A+ + P A A NLA Y G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 421 HVEAAIKSYKQAL 433
+ A++ ++AL
Sbjct: 61 DYDEALEYLEKAL 73
|
Length = 78 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 5e-06
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
A+A NL +AY++ G +EA + +AL L+P
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDP 32
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 7e-06
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
A NLGN Y LG EA+ Y++A++ PN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33
|
Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 7e-06
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
EA NLGNA +G DEA++ Y + L L P++
Sbjct: 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 1/150 (0%)
Query: 159 LEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 218
L A R + A A +G + AL+ + + +P P G++
Sbjct: 296 LLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK 355
Query: 219 PQEAIMCYQRAVQTRPNAIAFG-NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLG 277
+EAI ++A+ PN+ NLA + G+ AI + + DP ++ L
Sbjct: 356 AKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLA 415
Query: 278 NALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
A ++G EA+ + +L QA+
Sbjct: 416 QAYAELGNRAEALLARAEGYALAGRLEQAI 445
|
Length = 484 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 1e-05
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDP 369
NL Y + G+Y +A+ Y + L +DP
Sbjct: 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 1/125 (0%)
Query: 111 YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI 170
GR EA C + + L L + + +A Y + L+ P
Sbjct: 63 LSWAGRDKEAIDVCERY-SPVGLPARVLEALAKAYRNEKQWDKALELYRKLLQRDPNNPD 121
Query: 171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 230
LA ++G AL+Y KE V PT Y L V +A +A+ +Q+A+
Sbjct: 122 GLLGLALTLADAGKDAEALKYLKEYVARFPTDAARYEALAYVLRAAEDHLDALQAWQQAL 181
Query: 231 QTRPN 235
P+
Sbjct: 182 TLEPD 186
|
Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 34/148 (22%), Positives = 58/148 (39%)
Query: 91 LVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGL 150
L A LR + + LA+A +G + + +++ P + + G G
Sbjct: 56 LGAAVLRNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGN 115
Query: 151 VQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLG 210
EA S +A R+ PT AW+ L + G + A + Y++A++L P P NLG
Sbjct: 116 FGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG 175
Query: 211 NVYKALGMPQEAIMCYQRAVQTRPNAIA 238
G ++A A +
Sbjct: 176 MSLLLRGDLEDAETLLLPAYLSPAADSR 203
|
Length = 257 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 22/52 (42%), Positives = 28/52 (53%)
Query: 81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
GD D A+ A+ P A+A L A +R+GRL EAA R ALA +P
Sbjct: 11 GDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
|
Length = 65 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403
LA + G+Y +A++ L PLAA+ L+ G GR+ +A A+ P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 404 TMA 406
Sbjct: 63 DDP 65
|
Length = 65 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDP 369
NL Y + G Y +A+ Y + L ++P
Sbjct: 4 LYNLGNAYLKLGKYDEALEYYEKALELNP 32
|
Length = 34 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 34/109 (31%), Positives = 48/109 (44%)
Query: 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT 308
G A+ ++A P EA+N LG AL +GR DEA + Y Q L L P+ P
Sbjct: 113 NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN 172
Query: 309 NLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 357
NLG + L A + S NLA++ QG++ +A
Sbjct: 173 NLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221
|
Length = 257 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-05
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 175 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 234
LA + +GD + AL + A+ P +A L LG G EA + A+ P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 235 NA 236
+
Sbjct: 63 DD 64
|
Length = 65 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
A+A NL AY + G EA + +AL L+P
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
+A NLGN Y LG EA+ Y++A++ PN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSN 140
G+ A+ A L P +AW+ L +A + GR +EA + RQAL L P +N
Sbjct: 114 GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANN 173
Query: 141 L-------GNLMKAQGLVQEAYS 156
L G+L A+ L+ AY
Sbjct: 174 LGMSLLLRGDLEDAETLLLPAYL 196
|
Length = 257 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-05
Identities = 22/60 (36%), Positives = 28/60 (46%)
Query: 107 LASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
LA A +R G +EA ALA PL +A LG + QG + EA + AL P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
|
Length = 65 |
| >gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 54/257 (21%), Positives = 106/257 (41%), Gaps = 14/257 (5%)
Query: 58 EALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD-----AWSNLASAYM 112
E L+ +P E + + N ++ +G++D AIR + + P+ A L YM
Sbjct: 60 EMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQ-TLLESPDLTFEQRLLALQQLGRDYM 118
Query: 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP---TFA 169
G L+ A Q + A L N+ +A ++A +++
Sbjct: 119 AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE 178
Query: 170 IA--WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ 227
IA + LA + S D++RA + K+A++ A + LG V A G Q+A+ +
Sbjct: 179 IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALE 238
Query: 228 RAVQTRPNAI--AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR 285
R ++ P + L Y + G+ + + ++A+ + +A L + ++
Sbjct: 239 RVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEG 297
Query: 286 VDEAIQCYNQCLSLQPS 302
+D A + L +P+
Sbjct: 298 IDAAQAYLTRQLRRKPT 314
|
Length = 389 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 5e-05
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 258 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 291
Y++A+ DP EAY NL L ++G+ DEA+Q
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
|
Length = 34 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 6e-05
Identities = 16/63 (25%), Positives = 20/63 (31%)
Query: 141 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP 200
L G EA + AL P A A L + G L A + A+ P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 201 TFP 203
P
Sbjct: 63 DDP 65
|
Length = 65 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 7e-05
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 223
Y++A++L P +AY NL + LG EA+
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33
|
Length = 34 |
| >gnl|CDD|198111 smart01043, BTAD, Bacterial transcriptional activator domain | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 8e-05
Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 57 EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116
E RL E +A A G + A+ + L P L A R GR
Sbjct: 51 AERERLRELRLEALEALAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGR 110
Query: 117 LNEAA---QCCRQALA 129
EA + R+ LA
Sbjct: 111 RAEALRAYRRLRRLLA 126
|
Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats. Length = 145 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 9e-05
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
+ LA YK G Y++ALE E +P LG YY+L Y+ + E+AL
Sbjct: 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96
Query: 62 LEP 64
L+P
Sbjct: 97 LDP 99
|
Length = 100 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 2/147 (1%)
Query: 305 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 364
+ L Y+E L A L + LA+ Y+Q G A +
Sbjct: 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRA 91
Query: 365 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT--IRPTMAEAHANLASAYKDSGHV 422
L ++P D L N G + G+ A+Q + +AI + P A + N +G
Sbjct: 92 LTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDF 151
Query: 423 EAAIKSYKQALLLRPDFPEATCNLLHT 449
+ A K +AL + P PE+ L
Sbjct: 152 DKAEKYLTRALQIDPQRPESLLELAEL 178
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 2e-04
Identities = 20/63 (31%), Positives = 25/63 (39%)
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
LA G D A+ + A+ P EA LG AL GR+ EA L+ P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 302 SHP 304
P
Sbjct: 63 DDP 65
|
Length = 65 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 2e-04
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 89 YYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
Y A+EL PN A+A+ NLA + G+ +EA Q
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
|
Length = 34 |
| >gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 16/57 (28%), Positives = 34/57 (59%)
Query: 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409
++A A+ Y + + +DP A+ +R ++G T+A+ D +AI + P++A+A+
Sbjct: 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY 73
|
Length = 356 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
AY LG +G +EA + Y + L L P++
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 3/156 (1%)
Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162
A A G+ +EA + + +A P G+++ +EA +AL
Sbjct: 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKAL 367
Query: 163 RIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEA 222
+ P + NLA ++ G A++ + P P+ + L Y LG EA
Sbjct: 368 ALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427
Query: 223 IMCY--QRAVQTRPN-AIAFGNLASTYYERGQADMA 255
++ A+ R AI F AS + G D A
Sbjct: 428 LLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWA 463
|
Length = 484 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202
A A NL +++ G + AL+YY++A++L P
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 3e-04
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
EA NLG A +G +EA++ Y + L L P++
Sbjct: 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-04
Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 35/158 (22%)
Query: 107 LASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
LA + +G L+ A ++ALA +P V A +++
Sbjct: 186 LAQQALARGDLDAARALLKKALAADPQCVRA-----SILLGD------------------ 222
Query: 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIMC 225
L + GD A++ + + P + + L Y+ALG E +
Sbjct: 223 -----------LALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271
Query: 226 YQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 263
+RA++ P A LA E+ + A ++ +
Sbjct: 272 LRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQL 309
|
Length = 389 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 35/151 (23%)
Query: 145 MKAQ--GLVQEAYSCYLEALRIQPTFAIAWS----NLAGLFMESGDLNRALQYYKEAVKL 198
M AQ G EA Y EAL+++ S N+ ++ +G+ ++AL+YY +A++L
Sbjct: 43 MSAQADGEYAEALENYEEALKLEED-PNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101
Query: 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL--ASTYYERGQADMAI 256
P P A N+ +Y G ++A + G+ A + D A
Sbjct: 102 NPKQPSALNNIAVIYHKRG---------EKAEEA-------GDQDEAEALF-----DKAA 140
Query: 257 LYYKQAIGCDP-RFLEAYNNLGNALKDVGRV 286
Y+KQAI P ++EA N LK GR
Sbjct: 141 EYWKQAIRLAPNNYIEAQ----NWLKTTGRS 167
|
Length = 172 |
| >gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 29/140 (20%)
Query: 145 MKAQ--GLVQEAYSCYLEALRIQP---TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 199
M AQ G EA Y EA+R++ + N+ + +G+ +AL+YY +A++
Sbjct: 43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN 102
Query: 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQA--DMAIL 257
P P A N+ A++C+ R Q AI G+ E +A D A
Sbjct: 103 PFLPQALNNM------------AVICHYRGEQ----AIEQGD-----SEIAEAWFDQAAE 141
Query: 258 YYKQAIGCDP-RFLEAYNNL 276
Y+KQAI P ++EA N L
Sbjct: 142 YWKQAIALAPGNYIEAQNWL 161
|
Length = 168 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 4e-04
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 305 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGL-------SAPFNNLAVIYKQQGNYADA 357
AL NL + A + L + L + NNLA +Y G+Y +A
Sbjct: 6 AALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEA 65
Query: 358 ISCYNEVLRIDP 369
+ + L +
Sbjct: 66 LEYLEKALALRE 77
|
Length = 78 |
| >gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 76/391 (19%), Positives = 138/391 (35%), Gaps = 51/391 (13%)
Query: 79 EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138
+ ++ A R Y A ++ + A L M + A + +QAL ++P +A
Sbjct: 363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAV 422
Query: 139 SNLGNLMKAQGLVQEAYSCYLEAL--RIQPTFAIAWSNL--------AGLFMESGDLNRA 188
L NL + Q E ++ +L + + +L A G +A
Sbjct: 423 RGLANLYRQQS--PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA 480
Query: 189 LQYYKEAVKLKPTFPDAYLN--LGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFG-N 241
+ ++ + L P +L L + G +A +R Q +PN A+G
Sbjct: 481 AELQRQRLALDPG--SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLY 538
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL--------GNALKDVGRVDEAIQCY 293
L+ + +R +A +A L + E L N L+D G+ EA
Sbjct: 539 LSGS--DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596
Query: 294 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 353
Q QP + L + + AA + Y+ L G + L + QG+
Sbjct: 597 RQ----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD 652
Query: 354 YADAISCYNEVLRIDPLAADGLVNR--GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 411
A A + ++ R + +G A + + R + P +
Sbjct: 653 LAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNR---LIPQAKSQPPS 707
Query: 412 LASA--YKDSGHVEA-------AIKSYKQAL 433
+ SA +D+ EA A+++YK A+
Sbjct: 708 MESALVLRDAARFEAQTGQPQQALETYKDAM 738
|
Length = 1157 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 5e-04
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 406 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
A+A NL +AY G + A++ Y++AL L P+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 7/124 (5%)
Query: 249 RGQADMAILYYKQAIGCDPRFLEAY--NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 306
G+ AI ++ P L A L A ++ + D+A++ Y + L P++P
Sbjct: 66 AGRDKEAIDVCER---YSPVGLPARVLEALAKAYRNEKQWDKALELYRKLLQRDPNNPDG 122
Query: 307 LTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFN-NLAVIYKQQGNYADAISCYNEVL 365
L L + A Y K A LA + + ++ DA+ + + L
Sbjct: 123 LLGLALTLADAGKDAEALKYLKE-YVARFPTDAARYEALAYVLRAAEDHLDALQAWQQAL 181
Query: 366 RIDP 369
++P
Sbjct: 182 TLEP 185
|
Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800 |
| >gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 5e-04
Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 3/130 (2%)
Query: 175 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 234
LA + GDL+ A K+A+ P A + LG++ A G AI +R + P
Sbjct: 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245
Query: 235 NAI--AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292
+ L Y G + + ++A+ P + L L++ + A
Sbjct: 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP-GADLLLALAQLLEEQEGPEAAQAL 304
Query: 293 YNQCLSLQPS 302
+ L PS
Sbjct: 305 LREQLRRHPS 314
|
Length = 389 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 6e-04
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 342 NNLAVIYKQQGNYADAISCYNEVLRIDP 369
NL + Y + G+Y +A+ Y + L +DP
Sbjct: 5 YNLGLAYYKLGDYEEALEAYEKALELDP 32
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 7e-04
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
+ALA ++G Y +AL + R PL + LLLLG + A AL
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60
Query: 63 EP 64
+P
Sbjct: 61 DP 62
|
Length = 65 |
| >gnl|CDD|233013 TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR protein | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 7e-04
Identities = 56/244 (22%), Positives = 97/244 (39%), Gaps = 29/244 (11%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIA------- 54
+ A + Y+ AL +S+ + P T L L Y + ++D +
Sbjct: 137 LLTRAELLLDQRDYEAALAALDSLQAQAPRHTAVLRLALRAYQRSGNWDALLKLLPALRK 196
Query: 55 ----RNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYL---VAIELRPNFADAWSNL 107
EEA RLE + A G + A +E D D ++ A P A A
Sbjct: 197 AKALSPEEAARLE-QQA-YIGLLDEAREE--DADALKTWWKQLPRAERQEPELAVA---A 249
Query: 108 ASAYMRKGRLNEAAQCCRQALA--LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 165
A A ++ G +EA + +AL +P L+ + L L++ A + L+
Sbjct: 250 AEALIQLGDHDEAEKLIEEALKKEWDPELLRLYGRL-QPGDPSPLIKRAE----KWLKKH 304
Query: 166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMC 225
P A+ L L + +A Y + ++ L PT A+L L +++ LG + A
Sbjct: 305 PDDALLLLALGRLCLRQQLWGKAQSYLEASLSLAPTEE-AHLELAQLFEQLGDTEAAAQH 363
Query: 226 YQRA 229
Y+++
Sbjct: 364 YRKS 367
|
Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis [Unknown function, General]. Length = 367 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 406 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
AEA NL +A G + AI++Y++AL L PD EA NL
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNL 43
|
Length = 69 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 42/154 (27%), Positives = 60/154 (38%), Gaps = 16/154 (10%)
Query: 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDN---LLLLGAIYYQLHDYDMCIARNEEAL 60
A Q Y +G Y +AL+ + P DN L L G I + + I R ++AL
Sbjct: 311 GRALQTYLAGQYDEALKLLQPLIAAQP---DNPYYLELAGDILLEANKAKEAIERLKKAL 367
Query: 61 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
L+P N+A A + G AIR + P + W LA AY G EA
Sbjct: 368 ALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427
Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154
A A + ++ G L +A + A
Sbjct: 428 ----LLARA------EGYALAGRLEQAIIFLMRA 451
|
Length = 484 |
| >gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 75/408 (18%), Positives = 132/408 (32%), Gaps = 88/408 (21%)
Query: 72 NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
+A A++ + D A+ Y ++ PN D LA G+ EA + ++ +A
Sbjct: 91 ALAKAYRNEKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARF 150
Query: 132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL------ 185
P + L +++A +A + +AL ++P A L + G
Sbjct: 151 PTDAARYEALAYVLRAAEDHLDALQAWQQALTLEPDNPEAALELYRILTRLGAPPAAARL 210
Query: 186 ------------NRALQYYKEAVKLK----PTFPD---------AYLNLGNVYKALGMPQ 220
R L++ + A ++ P+ + A +L + G PQ
Sbjct: 211 AKQYPDLFTPEDQRWLEHDQAAELVRLGENPSRSEKERFAIADRALADLQALLDKWG-PQ 269
Query: 221 EAIMCYQRAVQTRPNAI--------------------------AFGNLASTYYERGQADM 254
+ Y+RA R A+ A +A Y Q +
Sbjct: 270 ANPL-YRRARIDRLGALLVRKRYAEVIREYESLEAEGQPLPPYAQEAVADAYLALRQPEK 328
Query: 255 AILYYKQ--AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP----------- 301
A+ Y++ A LE L A + + DEA + P
Sbjct: 329 ALPIYRELAAAEPADNNLELTIKLFYAYLEAEQYDEAQALLDGLKESTPPQRWDFTRSTK 388
Query: 302 ----SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFN-----NLAVIYKQQG 352
+ +A L LP A + LA AP N LA +Y+ +G
Sbjct: 389 APNDDYLEAQQLLVLSLAWRGDLPEAEARLDELLAT-----APGNPWLRLALADVYRARG 443
Query: 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG--RVTDAIQDYIRA 398
A Y + +DP + + T ++ R + + D + A
Sbjct: 444 WPRRAEQEYKQAESLDPDSLSAERGQAETALDLQEWRQAEQLTDDLVA 491
|
Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.001
Identities = 16/63 (25%), Positives = 21/63 (33%)
Query: 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437
G +A+ A+ P AEA L A G + A + AL P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 438 DFP 440
D P
Sbjct: 63 DDP 65
|
Length = 65 |
| >gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138
D LA+ Y AI+L PN A+ +++ A A ++ G EA +A+ L+P L A+
Sbjct: 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY 73
|
Length = 356 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 19/94 (20%)
Query: 57 EEALRLEP----RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112
EEAL+LE R + NM + G+ D A+ YY A+EL P A +N+A Y
Sbjct: 59 EEALKLEEDPNDR-SYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117
Query: 113 RKGR--------------LNEAAQCCRQALALNP 132
++G ++AA+ +QA+ L P
Sbjct: 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151
|
Length = 172 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202
A A NL +++ GD + AL+YY++A++L P
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 406 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
AEA NL +AY G + A++ Y++AL L P+
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 56/277 (20%), Positives = 94/277 (33%), Gaps = 22/277 (7%)
Query: 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGN 241
G A+ + L Y+ +A+ Y++ +Q P N
Sbjct: 67 GRDKEAIDVCERY-SPVGLPARVLEALAKAYRNEKQWDKALELYRKLLQRDPNNPDGLLG 125
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
LA T + G+ A+ Y K+ + P Y L L+ +A+Q + Q L+L+P
Sbjct: 126 LALTLADAGKDAEALKYLKEYVARFPTDAARYEALAYVLRAAEDHLDALQAWQQALTLEP 185
Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG---------LSAPFNNLAVIYKQQG 352
+P+A L I PAAA K + T +A L +
Sbjct: 186 DNPEAALELYRILTRLGAPPAAARLAKQYPDLFTPEDQRWLEHDQAAELVRLGENPSRSE 245
Query: 353 N----YAD-AISCYNEVL-RIDPLAAD----GLVNRGNTYKEIGRVTDAIQDYIRAITIR 402
AD A++ +L + P A ++R R + I++Y
Sbjct: 246 KERFAIADRALADLQALLDKWGPQANPLYRRARIDRLGALLVRKRYAEVIREYESLEAEG 305
Query: 403 PTMAE-AHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
+ A +A AY E A+ Y++ P
Sbjct: 306 QPLPPYAQEAVADAYLALRQPEKALPIYRELAAAEPA 342
|
Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 6/140 (4%)
Query: 313 IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ------QGNYADAISCYNEVLR 366
I L + + A + ++ Q GN+ +A+S + R
Sbjct: 69 IAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128
Query: 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 426
+ P + G ++GR +A + Y +A+ + P NL + G +E A
Sbjct: 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE 188
Query: 427 KSYKQALLLRPDFPEATCNL 446
A L NL
Sbjct: 189 TLLLPAYLSPAADSRVRQNL 208
|
Length = 257 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 36/152 (23%), Positives = 57/152 (37%)
Query: 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
LA +Y G +L P + L G + ++ ++ +A RL
Sbjct: 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129
Query: 63 EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
P E + + A + G D A R Y A+EL PN +NL + + +G L +A
Sbjct: 130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAET 189
Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154
A NL ++ QG +EA
Sbjct: 190 LLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221
|
Length = 257 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.002
Identities = 17/63 (26%), Positives = 24/63 (38%)
Query: 37 LLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL 96
L L + DYD +A E AL P AE + A +G + A A+
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60
Query: 97 RPN 99
P+
Sbjct: 61 DPD 63
|
Length = 65 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.003
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF 100
A+ N+ NA+ + G D A+ YY A+EL PN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404
A L N GN Y ++G+ +A++ Y +A+ + P
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33
|
Length = 34 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 406 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
AEA NL AY G E A+++Y++AL L P+
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.003
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
AY LG +Y LG +EA Y++A++ PN
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPN 33
|
Length = 34 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 406 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
A A+ L Y G E A + Y++AL L P+
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.004
Identities = 60/295 (20%), Positives = 114/295 (38%), Gaps = 26/295 (8%)
Query: 2 HMALAHQM-----YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARN 56
A+A + G + +AL + E +P T + + ++ +L D D
Sbjct: 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDF 388
Query: 57 EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116
++AL+L + Y + A KG+ A + Y +I+L P+F + L ++G
Sbjct: 389 DKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS 448
Query: 117 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176
+ + R+ P D ++ G L+ Q EA + A+ ++ + N+
Sbjct: 449 IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVL 508
Query: 177 GLFMESGDLNRALQYYKE-------AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRA 229
L ++ L + Q + E A+ + P A + + G EA+ ++RA
Sbjct: 509 PLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568
Query: 230 VQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
+ LA T E QA + Y +A + E Y L + L+ +
Sbjct: 569 AE----------LARTEGELVQA----ISYAEATRTQIQVQEDYPVLASKLQGML 609
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.004
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF 100
AE N+ NA+ + GD D A+ YY A+EL PN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.004
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
A A+ L Y++ G EA + +AL L+P
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDP 32
|
Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 922 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 100.0 | |
| PF13844 | 468 | Glyco_transf_41: Glycosyl transferase family 41; P | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.97 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.97 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.97 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.97 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.97 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.97 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.97 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.97 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.96 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.96 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.96 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.96 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.96 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.95 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.95 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.94 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.94 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.94 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.93 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.93 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK15490 | 578 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.92 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.92 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.92 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.91 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.91 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.91 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.89 | |
| TIGR03088 | 374 | stp2 sugar transferase, PEP-CTERM/EpsH1 system ass | 99.89 | |
| PRK15427 | 406 | colanic acid biosynthesis glycosyltransferase WcaL | 99.88 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.88 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.88 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.87 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.87 | |
| cd03796 | 398 | GT1_PIG-A_like This family is most closely related | 99.87 | |
| cd03792 | 372 | GT1_Trehalose_phosphorylase Trehalose phosphorylas | 99.87 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.86 | |
| PLN02871 | 465 | UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | 99.86 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.85 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.85 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.85 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.84 | |
| PLN02949 | 463 | transferase, transferring glycosyl groups | 99.84 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.84 | |
| cd03805 | 392 | GT1_ALG2_like This family is most closely related | 99.84 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.84 | |
| cd03812 | 358 | GT1_CapH_like This family is most closely related | 99.84 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.84 | |
| PLN02846 | 462 | digalactosyldiacylglycerol synthase | 99.83 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.83 | |
| TIGR03449 | 405 | mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino | 99.83 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.83 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.82 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.82 | |
| cd03807 | 365 | GT1_WbnK_like This family is most closely related | 99.82 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.82 | |
| cd04962 | 371 | GT1_like_5 This family is most closely related to | 99.81 | |
| PRK09922 | 359 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D | 99.81 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| cd04951 | 360 | GT1_WbdM_like This family is most closely related | 99.81 | |
| cd03822 | 366 | GT1_ecORF704_like This family is most closely rela | 99.81 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.81 | |
| PRK15484 | 380 | lipopolysaccharide 1,2-N-acetylglucosaminetransfer | 99.8 | |
| TIGR02472 | 439 | sucr_P_syn_N sucrose-phosphate synthase, putative, | 99.8 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 99.8 | |
| cd05844 | 367 | GT1_like_7 Glycosyltransferases catalyze the trans | 99.79 | |
| cd03818 | 396 | GT1_ExpC_like This family is most closely related | 99.79 | |
| PLN02316 | 1036 | synthase/transferase | 99.79 | |
| cd03820 | 348 | GT1_amsD_like This family is most closely related | 99.79 | |
| PRK10307 | 412 | putative glycosyl transferase; Provisional | 99.78 | |
| cd03821 | 375 | GT1_Bme6_like This family is most closely related | 99.78 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.78 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.78 | |
| PRK00654 | 466 | glgA glycogen synthase; Provisional | 99.78 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.78 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.78 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.78 | |
| TIGR02149 | 388 | glgA_Coryne glycogen synthase, Corynebacterium fam | 99.78 | |
| cd03801 | 374 | GT1_YqgM_like This family is most closely related | 99.77 | |
| cd03825 | 365 | GT1_wcfI_like This family is most closely related | 99.77 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.77 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| cd03806 | 419 | GT1_ALG11_like This family is most closely related | 99.77 | |
| cd03819 | 355 | GT1_WavL_like This family is most closely related | 99.76 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.76 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.76 | |
| cd04955 | 363 | GT1_like_6 This family is most closely related to | 99.76 | |
| cd03799 | 355 | GT1_amsK_like This is a family of GT1 glycosyltran | 99.76 | |
| cd03816 | 415 | GT1_ALG1_like This family is most closely related | 99.76 | |
| cd03809 | 365 | GT1_mtfB_like This family is most closely related | 99.76 | |
| cd03802 | 335 | GT1_AviGT4_like This family is most closely relate | 99.76 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.76 | |
| cd03817 | 374 | GT1_UGDG_like This family is most closely related | 99.75 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.75 | |
| cd03800 | 398 | GT1_Sucrose_synthase This family is most closely r | 99.75 | |
| PLN02501 | 794 | digalactosyldiacylglycerol synthase | 99.75 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.75 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.74 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.73 | |
| TIGR02468 | 1050 | sucrsPsyn_pln sucrose phosphate synthase/possible | 99.73 | |
| TIGR03087 | 397 | stp1 sugar transferase, PEP-CTERM/EpsH1 system ass | 99.73 | |
| cd03811 | 353 | GT1_WabH_like This family is most closely related | 99.73 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.72 | |
| TIGR02470 | 784 | sucr_synth sucrose synthase. This model represents | 99.72 | |
| PRK14099 | 485 | glycogen synthase; Provisional | 99.71 | |
| PRK10125 | 405 | putative glycosyl transferase; Provisional | 99.71 | |
| cd03795 | 357 | GT1_like_4 This family is most closely related to | 99.71 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.71 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.71 | |
| cd03814 | 364 | GT1_like_2 This family is most closely related to | 99.7 | |
| cd03798 | 377 | GT1_wlbH_like This family is most closely related | 99.7 | |
| cd03808 | 359 | GT1_cap1E_like This family is most closely related | 99.7 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.7 | |
| cd03813 | 475 | GT1_like_3 This family is most closely related to | 99.7 | |
| cd03823 | 359 | GT1_ExpE7_like This family is most closely related | 99.69 | |
| PRK14098 | 489 | glycogen synthase; Provisional | 99.69 | |
| KOG1111 | 426 | consensus N-acetylglucosaminyltransferase complex, | 99.68 | |
| TIGR02095 | 473 | glgA glycogen/starch synthases, ADP-glucose type. | 99.68 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.67 | |
| TIGR02918 | 500 | accessory Sec system glycosylation protein GtfA. M | 99.66 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.66 | |
| PRK05749 | 425 | 3-deoxy-D-manno-octulosonic-acid transferase; Revi | 99.65 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.65 | |
| cd04946 | 407 | GT1_AmsK_like This family is most closely related | 99.65 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.64 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.64 | |
| PLN00142 | 815 | sucrose synthase | 99.63 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.63 | |
| cd03791 | 476 | GT1_Glycogen_synthase_DULL1_like This family is mo | 99.63 | |
| cd03794 | 394 | GT1_wbuB_like This family is most closely related | 99.62 | |
| cd04949 | 372 | GT1_gtfA_like This family is most closely related | 99.62 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.6 | |
| PF00534 | 172 | Glycos_transf_1: Glycosyl transferases group 1; In | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.58 | |
| cd03804 | 351 | GT1_wbaZ_like This family is most closely related | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.57 | |
| PRK13609 | 380 | diacylglycerol glucosyltransferase; Provisional | 99.56 | |
| PHA01633 | 335 | putative glycosyl transferase group 1 | 99.56 | |
| PLN02275 | 371 | transferase, transferring glycosyl groups | 99.55 | |
| PLN02605 | 382 | monogalactosyldiacylglycerol synthase | 99.55 | |
| PRK00726 | 357 | murG undecaprenyldiphospho-muramoylpentapeptide be | 99.54 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.54 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.53 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.51 | |
| PHA01630 | 331 | putative group 1 glycosyl transferase | 99.5 | |
| cd03785 | 350 | GT1_MurG MurG is an N-acetylglucosaminyltransferas | 99.5 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.49 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.49 | |
| TIGR00236 | 365 | wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras | 99.49 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.49 | |
| PRK13608 | 391 | diacylglycerol glucosyltransferase; Provisional | 99.48 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.47 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.46 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.46 | |
| TIGR01133 | 348 | murG undecaprenyldiphospho-muramoylpentapeptide be | 99.45 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.44 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.44 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.44 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.43 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.43 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.4 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.4 | |
| cd03786 | 363 | GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th | 99.4 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.39 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.39 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.39 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.38 | |
| cd03788 | 460 | GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a | 99.35 | |
| TIGR02400 | 456 | trehalose_OtsA alpha,alpha-trehalose-phosphate syn | 99.34 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.34 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.33 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.31 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.3 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.29 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.27 | |
| KOG0853 | 495 | consensus Glycosyltransferase [Cell wall/membrane/ | 99.22 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.22 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.22 | |
| cd03793 | 590 | GT1_Glycogen_synthase_GSY2_like Glycogen synthase, | 99.21 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.21 | |
| cd01635 | 229 | Glycosyltransferase_GTB_type Glycosyltransferases | 99.2 | |
| PRK00025 | 380 | lpxB lipid-A-disaccharide synthase; Reviewed | 99.2 | |
| KOG1387 | 465 | consensus Glycosyltransferase [Cell wall/membrane/ | 99.2 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.18 | |
| PLN03063 | 797 | alpha,alpha-trehalose-phosphate synthase (UDP-form | 99.17 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.17 | |
| PF13692 | 135 | Glyco_trans_1_4: Glycosyl transferases group 1; PD | 99.17 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.17 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.16 | |
| PRK14501 | 726 | putative bifunctional trehalose-6-phosphate syntha | 99.15 | |
| TIGR00215 | 385 | lpxB lipid-A-disaccharide synthase. Lipid-A precur | 99.14 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.12 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.05 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.05 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.04 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.02 | |
| cd04950 | 373 | GT1_like_1 Glycosyltransferases catalyze the trans | 98.99 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.99 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.99 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.98 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.97 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.95 | |
| COG0438 | 381 | RfaG Glycosyltransferase [Cell envelope biogenesis | 98.94 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.94 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.92 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.92 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.9 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.89 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.88 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.87 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.87 | |
| TIGR03713 | 519 | acc_sec_asp1 accessory Sec system protein Asp1. Th | 98.87 | |
| TIGR02398 | 487 | gluc_glyc_Psyn glucosylglycerol-phosphate synthase | 98.86 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.86 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.86 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.85 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.85 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.84 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.84 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.83 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.82 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.81 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.81 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.8 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.8 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.8 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.79 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.79 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.78 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.77 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.77 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.77 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.76 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.75 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.75 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.75 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.75 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.73 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.73 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.73 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.72 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.72 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.71 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.7 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.69 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.67 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.66 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.65 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.65 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.64 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.6 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.59 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.57 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.57 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.55 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.55 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.53 | |
| COG0297 | 487 | GlgA Glycogen synthase [Carbohydrate transport and | 98.53 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.52 | |
| PLN03064 | 934 | alpha,alpha-trehalose-phosphate synthase (UDP-form | 98.52 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.5 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.5 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.48 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.47 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.47 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.46 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.46 | |
| TIGR03492 | 396 | conserved hypothetical protein. This protein famil | 98.44 | |
| COG1819 | 406 | Glycosyl transferases, related to UDP-glucuronosyl | 98.43 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.42 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.42 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.42 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.4 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.39 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.39 | |
| cd03784 | 401 | GT1_Gtf_like This family includes the Gtfs, a grou | 98.39 | |
| COG1519 | 419 | KdtA 3-deoxy-D-manno-octulosonic-acid transferase | 98.39 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.39 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.37 | |
| TIGR02919 | 438 | accessory Sec system glycosyltransferase GtfB. Mem | 98.37 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.36 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.35 | |
| PF13524 | 92 | Glyco_trans_1_2: Glycosyl transferases group 1 | 98.34 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.34 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.3 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.29 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.27 | |
| TIGR03568 | 365 | NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, | 98.26 | |
| COG0707 | 357 | MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami | 98.26 | |
| PRK09814 | 333 | beta-1,6-galactofuranosyltransferase; Provisional | 98.23 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.2 | |
| TIGR01426 | 392 | MGT glycosyltransferase, MGT family. This model de | 98.18 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.15 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.15 | |
| TIGR03590 | 279 | PseG pseudaminic acid biosynthesis-associated prot | 98.14 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 98.12 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.12 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.04 | |
| PF13528 | 318 | Glyco_trans_1_3: Glycosyl transferase family 1 | 98.04 | |
| COG0763 | 381 | LpxB Lipid A disaccharide synthetase [Cell envelop | 98.03 | |
| PRK12446 | 352 | undecaprenyldiphospho-muramoylpentapeptide beta-N- | 98.03 | |
| PF04007 | 335 | DUF354: Protein of unknown function (DUF354); Inte | 98.02 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.01 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.01 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.0 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.98 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.98 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.97 | |
| PF02684 | 373 | LpxB: Lipid-A-disaccharide synthetase; InterPro: I | 97.95 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.95 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.95 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.94 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.94 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.93 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.91 | |
| PRK01021 | 608 | lpxB lipid-A-disaccharide synthase; Reviewed | 97.91 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.9 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.88 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.87 | |
| PHA03392 | 507 | egt ecdysteroid UDP-glucosyltransferase; Provision | 97.86 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.86 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.85 | |
| PLN02670 | 472 | transferase, transferring glycosyl groups | 97.83 | |
| TIGR02094 | 601 | more_P_ylases alpha-glucan phosphorylases. This fa | 97.83 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.78 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.76 | |
| PLN02410 | 451 | UDP-glucoronosyl/UDP-glucosyl transferase family p | 97.75 | |
| PLN03004 | 451 | UDP-glycosyltransferase | 97.7 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 97.69 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.68 | |
| PLN02992 | 481 | coniferyl-alcohol glucosyltransferase | 97.66 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.65 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.64 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.63 | |
| PLN02863 | 477 | UDP-glucoronosyl/UDP-glucosyl transferase family p | 97.63 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.62 | |
| COG0381 | 383 | WecB UDP-N-acetylglucosamine 2-epimerase [Cell env | 97.6 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.6 | |
| KOG2941 | 444 | consensus Beta-1,4-mannosyltransferase [Posttransl | 97.58 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.58 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 97.58 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.58 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.57 | |
| PLN02764 | 453 | glycosyltransferase family protein | 97.57 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.57 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.56 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.55 | |
| PLN02554 | 481 | UDP-glycosyltransferase family protein | 97.55 | |
| PF00201 | 500 | UDPGT: UDP-glucoronosyl and UDP-glucosyl transfera | 97.54 | |
| PLN02167 | 475 | UDP-glycosyltransferase family protein | 97.51 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.5 | |
| PLN02207 | 468 | UDP-glycosyltransferase | 97.49 | |
| PLN02448 | 459 | UDP-glycosyltransferase family protein | 97.49 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.49 | |
| PLN02562 | 448 | UDP-glycosyltransferase | 97.49 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.48 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.48 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.48 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.47 | |
| PLN00164 | 480 | glucosyltransferase; Provisional | 97.46 | |
| PLN00414 | 446 | glycosyltransferase family protein | 97.44 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.42 | |
| PLN02210 | 456 | UDP-glucosyl transferase | 97.41 | |
| PLN02173 | 449 | UDP-glucosyl transferase family protein | 97.38 | |
| PLN02152 | 455 | indole-3-acetate beta-glucosyltransferase | 97.38 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.37 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.37 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.36 | |
| PLN02555 | 480 | limonoid glucosyltransferase | 97.35 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.35 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.34 | |
| PLN02208 | 442 | glycosyltransferase family protein | 97.34 | |
| cd04299 | 778 | GT1_Glycogen_Phosphorylase_like This family is mos | 97.34 | |
| PLN03015 | 470 | UDP-glucosyl transferase | 97.31 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 97.3 | |
| PF02350 | 346 | Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; | 97.24 | |
| PLN02534 | 491 | UDP-glycosyltransferase | 97.23 | |
| TIGR00661 | 321 | MJ1255 conserved hypothetical protein. This model | 97.23 | |
| PF05693 | 633 | Glycogen_syn: Glycogen synthase; InterPro: IPR0086 | 97.2 | |
| PLN03007 | 482 | UDP-glucosyltransferase family protein | 97.19 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.18 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.15 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.15 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.08 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.03 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.01 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.0 | |
| COG1817 | 346 | Uncharacterized protein conserved in archaea [Func | 97.0 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.96 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.95 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.93 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.93 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.88 | |
| COG3980 | 318 | spsG Spore coat polysaccharide biosynthesis protei | 96.87 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.86 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.85 | |
| PF06258 | 311 | Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP | 96.85 | |
| PRK10017 | 426 | colanic acid biosynthesis protein; Provisional | 96.78 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.78 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.75 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.74 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.72 | |
| PF01075 | 247 | Glyco_transf_9: Glycosyltransferase family 9 (hept | 96.65 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.63 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 96.58 | |
| PRK10117 | 474 | trehalose-6-phosphate synthase; Provisional | 96.58 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.56 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.52 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 96.51 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.51 | |
| PF00982 | 474 | Glyco_transf_20: Glycosyltransferase family 20; In | 96.43 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.41 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.38 | |
| TIGR02201 | 344 | heptsyl_trn_III lipopolysaccharide heptosyltransfe | 96.36 | |
| PF07429 | 360 | Glyco_transf_56: 4-alpha-L-fucosyltransferase glyc | 96.3 | |
| TIGR02195 | 334 | heptsyl_trn_II lipopolysaccharide heptosyltransfer | 96.3 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 96.29 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.29 | |
| cd03789 | 279 | GT1_LPS_heptosyltransferase Lipopolysaccharide hep | 96.17 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.14 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.03 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.02 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.02 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.01 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.99 | |
| PRK10422 | 352 | lipopolysaccharide core biosynthesis protein; Prov | 95.98 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.96 | |
| PRK10916 | 348 | ADP-heptose:LPS heptosyltransferase II; Provisiona | 95.87 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.87 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.85 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.84 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 95.77 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.72 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.69 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.65 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 95.61 | |
| PLN02205 | 854 | alpha,alpha-trehalose-phosphate synthase [UDP-form | 95.53 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.5 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.45 | |
| PRK02797 | 322 | 4-alpha-L-fucosyltransferase; Provisional | 95.33 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 95.28 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 95.27 | |
| COG0380 | 486 | OtsA Trehalose-6-phosphate synthase [Carbohydrate | 95.19 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 95.07 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.94 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 94.92 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 94.92 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.9 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.85 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.83 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.79 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.76 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.74 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.68 | |
| KOG1192 | 496 | consensus UDP-glucuronosyl and UDP-glucosyl transf | 94.65 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.64 | |
| PRK14089 | 347 | ipid-A-disaccharide synthase; Provisional | 94.63 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 94.62 | |
| PF04101 | 167 | Glyco_tran_28_C: Glycosyltransferase family 28 C-t | 94.61 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.52 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.51 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 94.06 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 93.97 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 93.72 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 93.68 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.52 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.45 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 93.36 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.28 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.2 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.17 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.16 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 92.96 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 92.78 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-156 Score=1193.47 Aligned_cols=915 Identities=55% Similarity=0.904 Sum_probs=895.2
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
.+++|..+++.|+|++|.+....+...+|.+.+.+..++.++++..+++.....-..+++.+|.-.++|..+|+++...|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (922)
++++|+..|+.++++.|++.++|.++|.++...|+.+.|...|..+++++|....+...+|.++...|+..+|..+|.++
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHH
Q 002431 162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240 (922)
Q Consensus 162 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 240 (922)
++..|....+|.+||.++..+|+...|+..|+++++++|...++|.++|.+|...+.+++|+..|.+++...|+ ..++.
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~g 290 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHG 290 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCCh
Q 002431 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320 (922)
Q Consensus 241 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 320 (922)
+++.+|+++|..+-|+..|+++++..|+.+++|.+++.++...|+..+|..+|.+++.+.|..+++.++||.+|.++|.+
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 002431 321 PAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400 (922)
Q Consensus 321 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 400 (922)
++|..+|+++++..|..+.++++||.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+.+.|+++|.+++.
T Consensus 371 e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHHHHHHhccCCCC
Q 002431 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLP 480 (922)
Q Consensus 401 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p 480 (922)
.+|..++++.+||.+|...|+..+|+..|+.++++.|+++++++|++.++.+.++|.+..+.++++.+++++++.....|
T Consensus 451 ~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlp 530 (966)
T KOG4626|consen 451 INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLP 530 (966)
T ss_pred cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCccccCCCcccceeeeecCCCCCChhHhhhhHHhh
Q 002431 481 SVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFG 560 (922)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rig~~s~~~~~h~~~~~~~~~~~ 560 (922)
.+.|+++++|+++|....+++++++.+|......++.||+.||...| .+.+|+||||||+||++||+++++.++..
T Consensus 531 svhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~----~~~~rlrIGYvSsDFgnHp~Shlmqsv~g 606 (966)
T KOG4626|consen 531 SVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLK----VKEGRLRIGYVSSDFGNHPTSHLMQSVPG 606 (966)
T ss_pred ccCcccccccccchHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCC----CCcCceEEEeecccccCCchHHHhccCcC
Confidence 99999999999999999999999999999999999999999887665 34589999999999999999999999999
Q ss_pred cCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCCHHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhcCCCceEE
Q 002431 561 MHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQV 640 (922)
Q Consensus 561 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~ 640 (922)
+|||++|||+||+.+++++..++.++...+.+|+++.+++...++..|++|+|||||.+.|||.|+|..+|++|||||||
T Consensus 607 mHdr~kveVfcYals~~d~t~fR~kv~~e~ehf~Dls~i~~~kiA~~I~qD~I~ILvnlnGyTkgarneifAlrPAPIQv 686 (966)
T KOG4626|consen 607 MHDRSKVEVFCYALSVNDGTNFRDKVMKEAEHFVDLSQIPCNKIADKIRQDKIHILVNLNGYTKGARNEIFALRPAPIQV 686 (966)
T ss_pred cCCccceEEEEEEeecCCCchHHHHHHhhccceeehhcCChHHHHHHHhhcCceEEEeccccccccccceeeccCCceeE
Confidence 99999999999999999988899999999999999999998899999999999999999999999999999999999999
Q ss_pred eccccCCCCCCCcccEEEecCccCCcCccCCCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecC
Q 002431 641 SYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFN 720 (922)
Q Consensus 641 ~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~ 720 (922)
+|+|||+|||.+.|||+|||.+..|++....|+|+++++|+|+++.++.+....+.+|...|.|..+|||+|.||||+||
T Consensus 687 ~wlGyPgTtGa~~mDYiITDs~tsPl~~a~~ysEkLv~lPh~ffi~d~~qk~~~~~dpn~kP~r~~y~Lp~d~vvf~~FN 766 (966)
T KOG4626|consen 687 MWLGYPGTTGATFMDYIITDSVTSPLELAQQYSEKLVYLPHCFFIGDHKQKNQDVLDPNNKPTRSQYGLPEDAVVFCNFN 766 (966)
T ss_pred EeecCCCCCCCceeeEEeecccCChHHHHHHHHHHHhhCCceEEecCcccccccccCCCCCCCCCCCCCCCCeEEEeech
Confidence 99999999999999999999999999999999999999999999999988777777777778999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCC
Q 002431 721 QLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCN 800 (922)
Q Consensus 721 ~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~ 800 (922)
+++|+.|.+++.|++||+++|||+||+..++..++++++..+++.|++++||+|.+....+||+++++.+||.|||++++
T Consensus 767 qLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplcn 846 (966)
T KOG4626|consen 767 QLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCN 846 (966)
T ss_pred hhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcCcC
Confidence 99999999999999999999999999999998889999999999999999999999988999999999999999999999
Q ss_pred ChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCC
Q 002431 801 AHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLF 880 (922)
Q Consensus 801 g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 880 (922)
|+||.+|.||+|||+||++|+++++||++|.|..+|+++ +|+.+.+||++++++|++|.+.++.+|..+|..+..||+|
T Consensus 847 GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~h-liak~~eEY~~iaV~Latd~~~L~~lr~~l~~~r~~splf 925 (966)
T KOG4626|consen 847 GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGH-LIAKNREEYVQIAVRLATDKEYLKKLRAKLRKARASSPLF 925 (966)
T ss_pred CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHH-HHhhhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCCCCCCCC
Q 002431 881 DTARWVKNLERSYFKMWSLHCSGQKPQHFKVTENDLDFPCDR 922 (922)
Q Consensus 881 ~~~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 922 (922)
|..+++..+|.+|.+||++||.|+.|+|+ +-+++++.|-++
T Consensus 926 d~~q~~~~LE~~y~~MW~~y~~G~~p~h~-~me~~~e~~hd~ 966 (966)
T KOG4626|consen 926 DTKQYAKGLERLYLQMWKKYCSGEVPDHR-RMENLQEEPHDD 966 (966)
T ss_pred CchHHHHHHHHHHHHHHHHhccCCCCchH-HHhccccCcCCC
Confidence 99999999999999999999999999999 667888888765
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-95 Score=747.18 Aligned_cols=553 Identities=31% Similarity=0.495 Sum_probs=463.5
Q ss_pred HHHHhcCCCCchhhhh--HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH-HHhhCCC
Q 002431 328 KATLAVTTGLSAPFNN--LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR-AITIRPT 404 (922)
Q Consensus 328 ~~a~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~ 404 (922)
...+..++.++..... +...+...+....+...+...+..+|++..+..+++......|....+...+.. +....|+
T Consensus 55 ~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~ 134 (620)
T COG3914 55 LLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPD 134 (620)
T ss_pred HccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcc
Confidence 3333344444443222 344555667777777777777888888888888887777777766666655555 6677777
Q ss_pred cHHHHHHH------HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhH-hHHHHHHHHHHHHHhccC
Q 002431 405 MAEAHANL------ASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR-DRMFSEVEGIIRRQVNMS 477 (922)
Q Consensus 405 ~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~ 477 (922)
+......+ +.....+|+..++....+++..+.|+++.+...++......|+|.+- ...+-.....+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~~~~~tnl~~~~~~~~------ 208 (620)
T COG3914 135 NAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWPEEAPTNLLSQLALFL------ 208 (620)
T ss_pred hHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccchhccchHHHHHHHHHh------
Confidence 76655444 77788888999999999999999999999888888887777877631 111111111110
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCccccCCCcccceeeeecCCCCCChhHhhhhH
Q 002431 478 VLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGS 557 (922)
Q Consensus 478 ~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rig~~s~~~~~h~~~~~~~~ 557 (922)
...+|..+.+...+...+.++.++.+.++..++. .+.+.... . +....++|+||||+|+|++.|+||+++.+
T Consensus 209 ---~~~~~~~~~~~d~p~~~l~~~~q~~~i~~~~~~~--~~~~~~~~-~--~~~~~~~rlRvGylS~dlr~Havg~l~~~ 280 (620)
T COG3914 209 ---GIYGFSLAYLADDPLKNLAIANQLLKILSQNAPE--LVRFPIRD-E--NIKRNGKRLRVGYLSSDLRSHAVGFLLRW 280 (620)
T ss_pred ---hccccchhhhccchhhhHHHHHHHHHHhcccCCC--ccccccch-h--hccccccceeEEEeccccccchHHHHHHH
Confidence 1122444445556777888888887776533321 11221111 0 12245789999999999999999999999
Q ss_pred HhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCCHHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhcCCCc
Q 002431 558 VFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAP 637 (922)
Q Consensus 558 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~~~ap 637 (922)
++++|||++|||++|+.++...+.++++++..+.+|+++.+|++.+++..|+.|+||||||++|||+-+|..+|++||||
T Consensus 281 v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r~~v~A~RpAP 360 (620)
T COG3914 281 VFEYHDRDKFEVFAYSLGPPHTDALQERISAAVEKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAP 360 (620)
T ss_pred HHHHhchhheEEEEEecCCCCchhHHHHHHHhhhheeccCCcCHHHHHHHHHhcCCeEEEeccCceeccchhhhhcCCCc
Confidence 99999999999999999977777899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccccCCCCCCCcccEEEecCccCCcCccCCCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEE
Q 002431 638 IQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFA 717 (922)
Q Consensus 638 vq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~ 717 (922)
|||+|+|||+|+|+|.|||||+|.++.|++++.+|+|++||||.|+..++... + ..+++.|.++|||++.+||+
T Consensus 361 iqvswlGy~aT~g~p~~DY~I~D~y~vPp~ae~yysEkl~RLp~cy~p~d~~~---~---v~p~~sR~~lglp~~avVf~ 434 (620)
T COG3914 361 IQVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLPQCYQPVDGFE---P---VTPPPSRAQLGLPEDAVVFC 434 (620)
T ss_pred eEEeecccccccCCCcceEEeeCceecCchHHHHHHHHHHhcccccCCCCCcc---c---CCCCcchhhcCCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999888776542 1 23347899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCC--hhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEec
Q 002431 718 CFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFP--AAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLD 795 (922)
Q Consensus 718 ~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~--~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~ 795 (922)
||++.+|++|++++.|++|++++|||+|||.+.| +....+|+..+++.||+.+|++|.|..|.++|.+.|..+|||||
T Consensus 435 c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLD 514 (620)
T COG3914 435 CFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLD 514 (620)
T ss_pred ecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeee
Confidence 9999999999999999999999999999999874 44467999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcc
Q 002431 796 TPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRL 875 (922)
Q Consensus 796 ~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~ 875 (922)
|+||+|+||++|||||||||||+.|++|+||+|+|+++++|+|| +|++|.++||+++++++.|...+++.|..++.++.
T Consensus 515 TyPY~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e-~vA~s~~dYV~~av~~g~dral~q~~r~~l~~~r~ 593 (620)
T COG3914 515 TYPYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPE-LVADSRADYVEKAVAFGSDRALRQQVRAELKRSRQ 593 (620)
T ss_pred cccCCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCch-hhcCCHHHHHHHHHHhcccHHHHHhhHHHHHhccc
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHh
Q 002431 876 TCPLFDTARWVKNLERSYFKMWSLHC 901 (922)
Q Consensus 876 ~~~~~~~~~~~~~~e~~y~~~~~~~~ 901 (922)
++|+||++.|+++||.+|.+||..+.
T Consensus 594 tspL~d~~~far~le~~y~~M~~~y~ 619 (620)
T COG3914 594 TSPLFDPKAFARKLETLYWGMWSEYI 619 (620)
T ss_pred cCcccCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999874
|
|
| >PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-89 Score=717.43 Aligned_cols=360 Identities=51% Similarity=0.878 Sum_probs=297.5
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC-HHHHHHHHHhCCCeE
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS-SDMIAKLINEDKIQI 615 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~di 615 (922)
|||||||+||++||+++++.+++++|||++|||+||+.++++++.++++++..+++|+++..++ +.+++++|++|+|||
T Consensus 1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~~~~~~~~dl~~~~~~~~~A~~Ir~D~IDI 80 (468)
T PF13844_consen 1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIRAEADHFVDLSGLSDDAEAAQRIRADGIDI 80 (468)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHHHHSEEEEEEEE-TTSHHHHHHHHHTT-SE
T ss_pred CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHHHhCCeEEECccCCcHHHHHHHHHHCCCCE
Confidence 7999999999999999999999999999999999999998777778999999999999999886 578999999999999
Q ss_pred EEcCCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCccCCCccceeecCCccccCCCcccc---
Q 002431 616 LINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKN--- 692 (922)
Q Consensus 616 l~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~~~~~~--- 692 (922)
||||+|||.|+|+.+|++||||||++|+|||+|||++.|||+|+|.+++|++.+.+|+|++++||++|+++++....
T Consensus 81 LVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~~ysEkLirLP~sy~~~d~~~~~~~~ 160 (468)
T PF13844_consen 81 LVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEEHYSEKLIRLPHSYFCNDHRQMFPHL 160 (468)
T ss_dssp EEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGGG-SSEEEEESS-S----HHHH-GGG
T ss_pred EEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCcccccCCccceEEccCceEECChHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998764210
Q ss_pred --------------------------------------------------------------------------------
Q 002431 693 -------------------------------------------------------------------------------- 692 (922)
Q Consensus 693 -------------------------------------------------------------------------------- 692 (922)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (468)
T PF13844_consen 161 KERIVLEEKDDSRVVDNVAVINATDLSPLLEKTEVKDTVRENIVLSGDGKDATSTEVELPVLEQPTTTPIEQMIASGQVQ 240 (468)
T ss_dssp SS-EEEE--------SSSEEEE-TTHHHHHHTSST-EEEEE---------------EEEEEEESSHHHHHHHHHHHT-SE
T ss_pred hhceEeccccCCcccchhhhhhhhcCchhhhhcchHHHHHHHHhhcCCchhcccceEecccccCccHHHHHHHHHcCCee
Confidence
Q ss_pred ------------------------ccCCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEe
Q 002431 693 ------------------------MDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLL 748 (922)
Q Consensus 693 ------------------------~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~ 748 (922)
..+|.......|++||||+|++||||||++.|++|+++++|++||+++|+|+|||.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~R~~~gLp~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~ 320 (468)
T PF13844_consen 241 TSVNGVVVQNGLATTQTNNKAATGEEVPQNIVVTTRAQYGLPEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLL 320 (468)
T ss_dssp EEETTEEEEECCGHHHH-HHHHTTSS--SSEEEEETGGGT--SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEE
T ss_pred EeECCEEeecccchhhhhccccCCccCCccccccCHHHcCCCCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEe
Confidence 00001111238999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 749 RFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 749 ~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
..+..+++.+++.++++||+++||+|.+..+..+|+..|+.+||+||||||+||+|++|||||||||||++|++++||+|
T Consensus 321 ~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~ 400 (468)
T PF13844_consen 321 RFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVG 400 (468)
T ss_dssp ETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHH
T ss_pred eCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHH
Confidence 87777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 002431 829 GSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 897 (922)
Q Consensus 829 ~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 897 (922)
+|+|..+|++| ||+.|.++|+++|++|++|++.|+++|+++|+++.++|+||.++|+++||++|++||
T Consensus 401 aSiL~~lGl~E-lIA~s~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~mW 468 (468)
T PF13844_consen 401 ASILRALGLPE-LIADSEEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQMW 468 (468)
T ss_dssp HHHHHHHT-GG-GB-SSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCch-hcCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999 999999999999999999999999999999999999999999999999999999999
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=381.96 Aligned_cols=437 Identities=31% Similarity=0.438 Sum_probs=427.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 111 (922)
.......++.-.++.|+|++|.+....+...+|.+.+....++..+++..++++....-..+++.+|...++|.++|.++
T Consensus 47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANIL 126 (966)
T ss_pred cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 34557788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 191 (922)
Q Consensus 112 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 191 (922)
...|++++|+..|+.++++.|+..++|.++|.++..+|+.+.|..+|..+++++|+...+...+|.++...|+..+|...
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 002431 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 270 (922)
Q Consensus 192 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 270 (922)
|.++++..|....+|.++|.++..+|+...|+..|+++++++|+ ..+|.++|.+|.+.+.+++|+..|.+++...|+..
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A 286 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA 286 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHH
Q 002431 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 350 (922)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 350 (922)
.++.+++.+|.++|..+-|+..|+++++..|..++++++++.++...|+..+|..+|.+++.+.|+.+.+.++||.+|.+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE 366 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002431 351 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 430 (922)
Q Consensus 351 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 430 (922)
+|++++|..+|.++++..|..+.++.++|.+|.++|++++|+.+|+.++.+.|..++++.++|..|..+|+.+.|++.|.
T Consensus 367 ~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 431 QALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 431 ~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
++++.+|...++..||+..+...|+..+|...++++.+
T Consensus 447 rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 447 RAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 99999999999999999999999999999988888876
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=400.85 Aligned_cols=461 Identities=23% Similarity=0.291 Sum_probs=336.3
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
.++..+.+.|++++|+..++++....|.++..+..+|.++...|++++|+..|+++++.+|++..++..++.++...|++
T Consensus 436 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCH
Confidence 34555566666666666666666666666666677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 84 DLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR 163 (922)
Q Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (922)
++|++.|+++++..|++..++..++.++...|++++|...+++++..+|.+...+..++..+...|++++|+..++++++
T Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777776777777777777777777777777777777777666777777777777777777777777777
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhH
Q 002431 164 IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNL 242 (922)
Q Consensus 164 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l 242 (922)
..|.+...|..++.++...|++++|+..++++++..|.++..+..++.++...|++++|...++++++..|+ ...+..+
T Consensus 596 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 675 (899)
T TIGR02917 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 677777777777777777777777777777777777777777777777777777777777777777776666 6666777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhH
Q 002431 243 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 322 (922)
Q Consensus 243 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 322 (922)
+.++...|++++|+..++.+....|.....+..+|.++...|++++|++.|+++++..|++ ..+..++.++...|++++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHH
Confidence 7777777777777777777776677777777777777777777777777777777777665 566667777777777777
Q ss_pred HHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 002431 323 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 402 (922)
Q Consensus 323 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 402 (922)
|...++++++..|++..+++.+|.++...|++++|+..|+++++.+|+++.++..++.++...|+ .+|+..++++++..
T Consensus 755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 77777777777777777777777777777777777777777777777777777777777777777 67777777777777
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHH
Q 002431 403 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEV 466 (922)
Q Consensus 403 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 466 (922)
|+++.++..+|.++...|++++|.++|+++++.+|.++.++.+++..+...|++++|...++++
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777777777777776666654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=392.26 Aligned_cols=464 Identities=23% Similarity=0.256 Sum_probs=313.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----------------
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR----------------- 65 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----------------- 65 (922)
..++..+...|++++|+..|+++++.+|++...+..+|.++...|++++|++.++++++..|.
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCC
Confidence 456677777777777777777777777777777777777777777777777777666666554
Q ss_pred -----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 66 -----------------FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQAL 128 (922)
Q Consensus 66 -----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 128 (922)
++..+..+|.++...|++++|++.|+++++.+|++..++..++.++...|++++|.+.+++++
T Consensus 447 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 447 FDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555555556666666666666666665556555556666666666666666666666666
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002431 129 ALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN 208 (922)
Q Consensus 129 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 208 (922)
..+|.+..++..++.++...|++++|...++++++.+|.+...+..++..+...|++++|+..++++++..|.++..+..
T Consensus 527 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 606 (899)
T TIGR02917 527 TIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM 606 (899)
T ss_pred HhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 65666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 209 LGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 287 (922)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~ 287 (922)
++.++...|++++|+..|+++++..|+ ...+..++.++...|++++|+..++++++.+|++..++..++.++...|+++
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence 666666666666666666666666555 5556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHcc
Q 002431 288 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367 (922)
Q Consensus 288 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 367 (922)
+|...++.+.+..|.++..+..+|.++...|++++|...|++++...|++ ..+..++.++...|++++|++.++++++.
T Consensus 687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 66666666666666666666667777777777777777777777766665 55666777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002431 368 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL 447 (922)
Q Consensus 368 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 447 (922)
+|++..+++.+|.++...|++++|+..|+++++..|+++.++..++.++...|+ .+|+..++++++..|+++..+..++
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~ 844 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLG 844 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777 6677777777777777777777777
Q ss_pred HhhcccCChhhHhHHHHHHHH
Q 002431 448 HTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 448 ~~~~~~~~~~~a~~~~~~~~~ 468 (922)
..+...|++++|...++++.+
T Consensus 845 ~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 845 WLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 777777777776666666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=350.79 Aligned_cols=546 Identities=12% Similarity=0.062 Sum_probs=372.4
Q ss_pred HHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHc
Q 002431 287 DEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR 366 (922)
Q Consensus 287 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 366 (922)
.+++.-+.......|.+++++..||.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 33444444445558888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002431 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (922)
Q Consensus 367 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (922)
.+|+++.+++.+|.++.++|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+.++
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876655555554
Q ss_pred HHhhcccCChhhHhHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCC
Q 002431 447 LHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPI 526 (922)
Q Consensus 447 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (922)
+.-+. .....+++....+..-+..+ ..+...... ..|... ++.
T Consensus 229 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~--------------~~~-- 271 (694)
T PRK15179 229 LVDLN-------------ADLAALRRLGVEGDGRDVPV-----SILVLEKML---QEIGRR--------------RNA-- 271 (694)
T ss_pred HHHHH-------------HHHHHHHHcCcccccCCCce-----eeeeHHHHH---HHHhhc--------------Ccc--
Confidence 43322 22222333222222111111 111111110 011110 000
Q ss_pred ccccCCCcccc-eeeeecCCCCCChhHhhhhHHhhcCCCCCe--------------EEEEEecCCCCC-hHHHHHHHhcc
Q 002431 527 PIRLDGGLRRL-RVGYVSSDFGNHPLSHLMGSVFGMHNKENV--------------EVFCYALSPNDG-TEWRQRTQSEA 590 (922)
Q Consensus 527 ~~~~~~~~~~~-rig~~s~~~~~h~~~~~~~~~~~~~~~~~~--------------e~~~~~~~~~~~-~~~~~~~~~~~ 590 (922)
. -...|.++. ||.++...+..++..+++..|..++++.++ +|+|+.....++ +.+...++..+
T Consensus 272 ~-~~~~~~~~~~rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~G 350 (694)
T PRK15179 272 E-YDAGPESFVGPVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAG 350 (694)
T ss_pred c-ccCCCCCCcceEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCC
Confidence 0 011345667 899999999999999999999999988755 566664432222 34555665555
Q ss_pred CceEECCCCC----------------------------HHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhc---C--CCc
Q 002431 591 EHFVDVSAMS----------------------------SDMIAKLINEDKIQILINLNGYTKGARNEIFAM---Q--PAP 637 (922)
Q Consensus 591 ~~~~~~~~~~----------------------------~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~---~--~ap 637 (922)
.....+.... ...+.+.|++.++||+ |+|..+..+++. + ..|
T Consensus 351 v~v~~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIV-----H~h~~~a~~lg~lAa~~~gvP 425 (694)
T PRK15179 351 IPVSVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVV-----HIWQDGSIFACALAALLAGVP 425 (694)
T ss_pred CeEEEeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEE-----EEeCCcHHHHHHHHHHHcCCC
Confidence 4332221110 1567889999999999 777665544322 2 247
Q ss_pred eEE-eccccCCCCCCCc-----------ccEEEecCccCCcCcc--------CCCccceeecCCccccCCCccccccCCC
Q 002431 638 IQV-SYMGFPGTTGASY-----------IDYLVTDEFVSPLRYA--------HIYSEKLVHVPHCYFVNDYKQKNMDVLD 697 (922)
Q Consensus 638 vq~-~~~g~~~t~g~~~-----------~d~~~~d~~~~~~~~~--------~~~~e~~~~lp~~~~~~~~~~~~~~~~~ 697 (922)
+.+ ++.+.+....... +...-.+.+++.+... ..-.+++..+|++. +...+.++
T Consensus 426 vIv~t~h~~~~~~~~~~~~~~~~~l~~~l~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGV------d~~~f~~~ 499 (694)
T PRK15179 426 RIVLSVRTMPPVDRPDRYRVEYDIIYSELLKMRGVALSSNSQFAAHRYADWLGVDERRIPVVYNGL------APLKSVQD 499 (694)
T ss_pred EEEEEeCCCccccchhHHHHHHHHHHHHHHhcCCeEEEeCcHHHHHHHHHHcCCChhHEEEECCCc------CHHhcCCC
Confidence 765 4333321111000 0000011222222211 11122333444332 11111111
Q ss_pred CCCCCCcC--CCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceE
Q 002431 698 PNCQPKRS--DYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQII 773 (922)
Q Consensus 698 ~~~~~~r~--~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~ 773 (922)
+.....+. ..+++++.+++|+++|+ .|+++.+++++++++++.|+.+|+|+|+|+. ++.+++.++++|+ .++|+
T Consensus 500 ~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~-~~~L~~l~~~lgL-~~~V~ 577 (694)
T PRK15179 500 DACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPL-LESVREFAQRLGM-GERIL 577 (694)
T ss_pred chhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcc-hHHHHHHHHHcCC-CCcEE
Confidence 11111111 22356667888888876 5999999999999999999999999999876 8899999999999 59999
Q ss_pred EcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC--C--HHH
Q 002431 774 FTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--S--MKE 848 (922)
Q Consensus 774 f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~--~~~ 848 (922)
|+|..+ +...+|+.+||||.||.++| |++++|||+||+|||+........-+. -|.++ +++. | .++
T Consensus 578 flG~~~--dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~------dg~~G-lLv~~~d~~~~~ 648 (694)
T PRK15179 578 FTGLSR--RVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQ------EGVTG-LTLPADTVTAPD 648 (694)
T ss_pred EcCCcc--hHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEECCCChHHHcc------CCCCE-EEeCCCCCChHH
Confidence 999854 66777999999999999999 999999999999999654332222221 15555 4432 3 357
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 849 YEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 849 ~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
+++.+.+++.+......++++.++.. ...||++.++++++++|+
T Consensus 649 La~aL~~ll~~l~~~~~l~~~ar~~a--~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 649 VAEALARIHDMCAADPGIARKAADWA--SARFSLNQMIASTVRCYQ 692 (694)
T ss_pred HHHHHHHHHhChhccHHHHHHHHHHH--HHhCCHHHHHHHHHHHhC
Confidence 77777776665555556666676655 235999999999999995
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=372.83 Aligned_cols=467 Identities=16% Similarity=0.102 Sum_probs=284.8
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH-----------
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECY----------- 70 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------- 70 (922)
++.+++.....++.+.|.+.+++++..+|+++.++..++.++...|+.++|.+.++++++.+|+++.++
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCC
Confidence 455666667777777777777777777777777777777777777777777777777777777665442
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002431 71 -----GNMANAWKEKGDIDLAIRYYLVAIELRPNFADA-WSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL 144 (922)
Q Consensus 71 -----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 144 (922)
..+|.++...|++++|++.|+++++.+|.+... ......+....|++++|++.++++++.+|++..++..++.+
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~l 190 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALL 190 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 444556666677777777777766666554331 11112222234666666666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC----------------------------------CcHHH-------------------
Q 002431 145 MKAQGLVQEAYSCYLEALRIQP----------------------------------TFAIA------------------- 171 (922)
Q Consensus 145 ~~~~g~~~~A~~~~~~al~~~p----------------------------------~~~~~------------------- 171 (922)
+...|++++|+..+++++...+ .....
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 6666666666666665543211 10000
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-h------------
Q 002431 172 -WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNA-I------------ 237 (922)
Q Consensus 172 -~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~------------ 237 (922)
...++..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|+. .
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 00224455566666666666666666666666666666666666666666666666666655541 0
Q ss_pred --HHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHH---
Q 002431 238 --AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN--- 312 (922)
Q Consensus 238 --~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~--- 312 (922)
....++..+...|++++|+..|++++..+|++..++..+|.++...|++++|++.|+++++.+|++..++..++.
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 112335555666666666666666666666666666666666666666666666666666666665544333322
Q ss_pred ---------------------------------------HHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCC
Q 002431 313 ---------------------------------------IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 353 (922)
Q Consensus 313 ---------------------------------------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 353 (922)
.+...|++++|+..|+++++.+|+++.+++.++.+|.+.|+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 23345666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHccCCCCHH------------------------------------------------------------
Q 002431 354 YADAISCYNEVLRIDPLAAD------------------------------------------------------------ 373 (922)
Q Consensus 354 ~~~A~~~~~~al~~~p~~~~------------------------------------------------------------ 373 (922)
+++|+..++++++.+|.++.
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 66666666666665555544
Q ss_pred --------------HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 374 --------------GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 374 --------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
.+..+|.++.+.|++++|+..|+++++.+|+++.++..++.+|...|++++|++.++++++..|++
T Consensus 591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 444555666666666666777777776667666677777777777777777777777666666666
Q ss_pred HHHHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 440 PEATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 440 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
+.+...+...+...|++++|...++++..
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 66666666666666666666666555543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=372.06 Aligned_cols=466 Identities=18% Similarity=0.135 Sum_probs=403.2
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTD-NLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
+.+|+.+...|++++|++.|+++++.+|.+.. +......+....|++++|++.|+++++.+|+++.++..+|.++...|
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccC
Confidence 56788899999999999999999998887754 22233334445699999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCC----------------------------------CcHH---H-----------------HHHH
Q 002431 82 DIDLAIRYYLVAIELRP----------------------------------NFAD---A-----------------WSNL 107 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p----------------------------------~~~~---~-----------------~~~l 107 (922)
++++|+..++++++..+ +... + ...+
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 99999999998865322 1110 0 0123
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH--------------HHH
Q 002431 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI--------------AWS 173 (922)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~ 173 (922)
|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++.. ...
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 677888999999999999999999999999999999999999999999999999999887642 123
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHh-----------
Q 002431 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGN----------- 241 (922)
Q Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~----------- 241 (922)
.++..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|+ ..++..
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 45778889999999999999999999999999999999999999999999999999998887 333333
Q ss_pred -------------------------------HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 242 -------------------------------LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 290 (922)
Q Consensus 242 -------------------------------l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 290 (922)
++..+...|++++|+..|+++++.+|++..+++.++.++...|++++|+
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3445567899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHH----------------------------------------
Q 002431 291 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT---------------------------------------- 330 (922)
Q Consensus 291 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a---------------------------------------- 330 (922)
..++++++..|+++..++.++..+...+++++|+..++++
T Consensus 516 ~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 516 ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999998888887777777777777665542
Q ss_pred HhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHH
Q 002431 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 410 (922)
Q Consensus 331 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 410 (922)
++..|.++..+..+|.++.+.|++++|+..|+++++.+|+++.++..++.++...|++++|++.++++++..|++..++.
T Consensus 596 l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~ 675 (1157)
T PRK11447 596 LRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQR 675 (1157)
T ss_pred HHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHH
Confidence 22467788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 411 NLASAYKDSGHVEAAIKSYKQALLLRPDFPE------ATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 411 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
.+|.++...|++++|++.|+++++..|+++. ++..++..+...|++++|...++++..
T Consensus 676 ~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 676 RVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999998876543 455667788888999999999888753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=336.84 Aligned_cols=433 Identities=15% Similarity=0.158 Sum_probs=319.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
..+|..+++.|+|++|+..|++++...|+ +..+..+|.||..+|++++|++.++++++.+|++..+++.+|.+|...|+
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 35677777777777777777777777774 56677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (922)
+++|+..|..+...++.+......+...... ..+.......++..|.+...+..++..+.. .....+...+....
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQS-FRPKPRPAGLEDSN 284 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-ccCCcchhhhhccc
Confidence 7777777776666554433222111111111 234444555556666555555555554322 22222333334444
Q ss_pred hhCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-
Q 002431 163 RIQPTFAIAWSNLAGLFM---ESGDLNRALQYYKEAVKLK---PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN- 235 (922)
Q Consensus 163 ~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 235 (922)
+.++.....+..++..+. ..+++++|++.|++++... |....++..+|.++...|++++|+..|+++++.+|+
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 364 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV 364 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 444544444444444332 2467888888888888753 666678888888888889999999999998888887
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
...+..++.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++.+|++...+..+|.++.
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 77888888888888999999999998888888888888888988888899999999999998888888888888888888
Q ss_pred HcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH------HHHHHHHH-HHhCCH
Q 002431 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG------LVNRGNTY-KEIGRV 388 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~l~~~~-~~~g~~ 388 (922)
+.|++++|+..|++++...|.++.+++.+|.++...|++++|++.|++++++.|..... +...+..+ ...|++
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 89999999999998888888888888888999888999999999999988888764322 22223333 346888
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 389 TDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (922)
Q Consensus 389 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (922)
++|+..++++++++|++..++..+|.++...|++++|+.+|++++++.+....
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 89999999988888888888888899999999999999999998888776544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=330.98 Aligned_cols=434 Identities=17% Similarity=0.202 Sum_probs=369.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
...+..+|..++..|+|++|+..|+++++..|+ +..+..+|.+|...|++++|++.++++++.+|++..++..+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345678899999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (922)
..|++++|+..|..+...++.+......+...... ..+......+++..|.+...+..++..+. ......+...+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 280 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQ-SFRPKPRPAGL 280 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHH-HccCCcchhhh
Confidence 99999999999988877765544332222221111 34556666777778877666666666543 22333334444
Q ss_pred HHHHhcCCCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHhhC---CC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhc
Q 002431 193 KEAVKLKPTFPDAYLNLGNVYK---ALGMPQEAIMCYQRAVQTR---PN-AIAFGNLASTYYERGQADMAILYYKQAIGC 265 (922)
Q Consensus 193 ~~~l~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 265 (922)
....+.++.....+..++..+. ..+++++|++.|+++++.. |+ ..++..++.++...|++++|+..+++++..
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555556665555566555443 3478999999999999864 44 778999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHH
Q 002431 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLA 345 (922)
Q Consensus 266 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 345 (922)
+|+....|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|++...+..+|
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHH------HHH-HHHHHh
Q 002431 346 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH------ANL-ASAYKD 418 (922)
Q Consensus 346 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~l-a~~~~~ 418 (922)
.++.++|++++|+..|+++++..|.++.++..+|.++...|++++|+..|++++++.|++...+ ... +..+..
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998753322 222 234445
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHHHHH
Q 002431 419 SGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRR 472 (922)
Q Consensus 419 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 472 (922)
.|++++|.+.++++++++|++..++..++..+...|++++|...|+++.++.+.
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 799999999999999999999999999999999999999999999999886543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=315.11 Aligned_cols=456 Identities=17% Similarity=0.090 Sum_probs=322.8
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
+|..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|.+...+..++.+ +
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~ 122 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----P 122 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----c
Confidence 467788888889999999999999999999999999999999999999999999999999999999888888666 9
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHH--------HHH--------------------------------cCCHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASA--------YMR--------------------------------KGRLNEAA 121 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~--------~~~--------------------------------~g~~~~A~ 121 (922)
++++|+..|+++++.+|++.+++..++.. |.+ +|++++|+
T Consensus 123 ~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 123 VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999999999999988877666665 333 34444444
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Q 002431 122 QCCRQALALNPLLVDAHSNLGNLMKA-QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL-- 198 (922)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-- 198 (922)
..++++.+.+|.+......++.+|.. +++ +++..+++..++ .++.++..++..|.+.|+.++|.+.+++.-..
T Consensus 203 ~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 203 TLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 44444444444444444444444444 233 444444332111 33334444455555555555555444332111
Q ss_pred --------------------------------------------------------------------------------
Q 002431 199 -------------------------------------------------------------------------------- 198 (922)
Q Consensus 199 -------------------------------------------------------------------------------- 198 (922)
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence
Q ss_pred -------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---------------------------------
Q 002431 199 -------------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT--------------------------------- 232 (922)
Q Consensus 199 -------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------------------- 232 (922)
.|.+......++......|+.++|..+|+++...
T Consensus 359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 0222223333334444455555555555543320
Q ss_pred --------------------------------CC---ChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002431 233 --------------------------------RP---NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLG 277 (922)
Q Consensus 233 --------------------------------~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 277 (922)
.| +..++..+|.++.. ++.++|+..+.+++...|+.. ....++
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA 516 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVA 516 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHH
Confidence 01 23456778877776 777788888888887777654 355566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHH
Q 002431 278 NALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 357 (922)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 357 (922)
..+...|++++|+..|+++....|. ...+..+|.++.+.|++++|..+|+++++..|+....+..++......|++++|
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHH
Confidence 6667788888888888887665444 345667777888888888888888888887777766666666666666888888
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002431 358 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 358 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 437 (922)
+..|+++++.+|+ +..+..+|.++.+.|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++.+|
T Consensus 596 l~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 596 LNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 8888888888885 777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHhhcccCChhhHhHHHHHHHHH
Q 002431 438 DFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 469 (922)
Q Consensus 438 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 469 (922)
+++.+++++..++...|++++|...++++.++
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888888888888888888887777776544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=294.84 Aligned_cols=462 Identities=21% Similarity=0.296 Sum_probs=332.1
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR---FAECYGNMANAWKEKGDIDLAIRYYL 91 (922)
Q Consensus 15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~ 91 (922)
+..+..++.++...++.+|.++..++.-++..|+|+.+..+...++..... .++.++.+|.+|..+|+|++|..+|.
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 444555555555555555555555666666666666666666666554322 24456667777777777777777777
Q ss_pred HHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCC
Q 002431 92 VAIELRPNF-ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG----LVQEAYSCYLEALRIQP 166 (922)
Q Consensus 92 ~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p 166 (922)
++++.++++ .-.++.+|++|...|+++.|..+|+++++..|++.++...+|.+|...+ ..+.|..+..++++..|
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~ 411 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP 411 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc
Confidence 777666665 5566667777777777777777777777777777777777776666654 45566666666666666
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCC-
Q 002431 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKL-----KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT-----RPN- 235 (922)
Q Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~- 235 (922)
.+..+|..++.++....-+.. +..|..++.. .+--++.++++|..++..|++++|...|.+++.. +++
T Consensus 412 ~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred ccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence 666666666666655443333 6666665532 2233567777777777888888888888877765 111
Q ss_pred -----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhH
Q 002431 236 -----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310 (922)
Q Consensus 236 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 310 (922)
....++++.++...++++.|.+.|..+++..|...+++..+|......++..+|...++.++..+..++.++..+
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~ 570 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLL 570 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHH
Confidence 224677888888888888888888888888888888888887666677777888888888877777776666666
Q ss_pred HHHHHH------------------------------------------------cCChhHHHHHHHHHHhcCCCCchhhh
Q 002431 311 GNIYME------------------------------------------------WNMLPAAASYYKATLAVTTGLSAPFN 342 (922)
Q Consensus 311 a~~~~~------------------------------------------------~~~~~~A~~~~~~a~~~~~~~~~~~~ 342 (922)
|.++.. .+.+++|++.|.+++..+|.|..+-+
T Consensus 571 G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAAN 650 (1018)
T KOG2002|consen 571 GNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAAN 650 (1018)
T ss_pred HHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhcc
Confidence 654442 23467888899999999999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHhcC
Q 002431 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR--PTMAEAHANLASAYKDSG 420 (922)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g 420 (922)
.+|.++...|++.+|+.+|.+..+-..+..++|.++|.||..+|+|..|++.|+.+++.. .++.+++..||.++...|
T Consensus 651 GIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 651 GIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred chhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999988777788899999999999999999999999999874 467889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCC------------hhhHhHHHHHHHHHHHHHhccC
Q 002431 421 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCS------------WEDRDRMFSEVEGIIRRQVNMS 477 (922)
Q Consensus 421 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~ 477 (922)
.+.+|.+...+++.+.|.++.+.+|++......+. ..++...++.+.+++..+...+
T Consensus 731 ~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 731 KLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred hHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988877654321 2234445555666666665544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=295.20 Aligned_cols=467 Identities=19% Similarity=0.244 Sum_probs=264.1
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLR-TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEK 80 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 80 (922)
++..|...+..|+|..|+.+|++++..+|.. ++....+|.|+.++|+.+.|+..|+++++++|.++.++..||.+-...
T Consensus 167 LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~ 246 (1018)
T KOG2002|consen 167 LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF 246 (1018)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc
Confidence 4566777888888888888888888877743 566677788888888888888888888888777666666666555443
Q ss_pred C---CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHH
Q 002431 81 G---DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP---LLVDAHSNLGNLMKAQGLVQEA 154 (922)
Q Consensus 81 g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A 154 (922)
. .+..+...+.++...++.+|.+...++..++-.|+|+.+..+...++.... -..+.++.+|.++..+|++++|
T Consensus 247 ~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA 326 (1018)
T KOG2002|consen 247 NDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKA 326 (1018)
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHH
Confidence 3 345566666666666666666555555555555555555555555554431 2233455555555555555555
Q ss_pred HHHHHHHHhhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHH
Q 002431 155 YSCYLEALRIQPTF-AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG----MPQEAIMCYQRA 229 (922)
Q Consensus 155 ~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~ 229 (922)
..+|.++++.++++ ...++.+|+.|...|+++.|...|++.++..|++.++...+|.+|...+ ..+.|..++.++
T Consensus 327 ~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 327 FKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 55555555555554 4445555555555555555555555555555555555555555554443 334444444444
Q ss_pred HhhCCC---------------------------------------hhHHHhHHHHHHHcCChHHHHHHHHHHHhc-----
Q 002431 230 VQTRPN---------------------------------------AIAFGNLASTYYERGQADMAILYYKQAIGC----- 265 (922)
Q Consensus 230 ~~~~p~---------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----- 265 (922)
++..|. .+..+++|..++..|++.+|...|.++++.
T Consensus 407 ~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 407 LEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred HhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 444433 444445555555555555555555555432
Q ss_pred CCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchh
Q 002431 266 DPRF-----LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP 340 (922)
Q Consensus 266 ~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 340 (922)
+++. ....++++.++...++++.|.+.|..+++..|...+++..+|.+....++..+|...++.++..+..++.+
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~a 566 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNA 566 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHH
Confidence 1111 11344555555555555555555555555555555555555544444455555555555555555555555
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccC--CCCHHHHHHHHHHHHH------------hCCHHHHHHHHHHHHhhCCCcH
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRID--PLAADGLVNRGNTYKE------------IGRVTDAIQDYIRAITIRPTMA 406 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~al~~~p~~~ 406 (922)
+..+|.++....++..|.+-|+..++.. ..++.++..+|.++.+ .+.+++|++.|.++++.+|.|.
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~ 646 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM 646 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 5555555444444444444333333221 1233344444444432 2345666666666666666666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
.+-+.+|.++...|++.+|+.+|.++.+-..++.++|.|++++|..+|+|..|...|+.+..
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666656666666666666666666666555555443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-30 Score=302.82 Aligned_cols=422 Identities=14% Similarity=0.050 Sum_probs=350.4
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002431 19 LEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98 (922)
Q Consensus 19 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 98 (922)
+..++. -...|.++....-...+....|+.++|++.+.++...+|..+.++..+|.++...|++++|+..|+++++.+|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 455666 5556777777777888888999999999999999888888888899999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 002431 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 178 (922)
Q Consensus 99 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 178 (922)
+++.++..++.++...|++++|+..++++++..|++.. +..+|.++...|++++|+..++++++..|++..++..++.+
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~ 159 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQA 159 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999998999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHH-----HcCCh---HHHHHHHHHHHhh---CCChh-----
Q 002431 179 FMESGDLNRALQYYKEAVKLKPTFPD-----AYLNLGNVYK-----ALGMP---QEAIMCYQRAVQT---RPNAI----- 237 (922)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~---~p~~~----- 237 (922)
+...+..++|+..++++.. .|+... ....+..+.. ..+++ ++|++.++.+++. +|+..
T Consensus 160 l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 9988999999988887765 443211 1222222222 22234 7788888888865 33311
Q ss_pred HHHhHHHHHHHcCChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----hHHHHhHHH
Q 002431 238 AFGNLASTYYERGQADMAILYYKQAIGCDPRF-LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH----PQALTNLGN 312 (922)
Q Consensus 238 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~ 312 (922)
+.......+...|++++|+..|+++++..+.. ..+...++.++...|++++|+..|+++++..|.+ ......++.
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 11221234467799999999999998775432 2234446889999999999999999998887765 346677788
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 002431 313 IYMEWNMLPAAASYYKATLAVTTGL---------------SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVN 377 (922)
Q Consensus 313 ~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 377 (922)
++.+.|++++|+..++++....|.. ..++..++.++...|++++|++.+++++...|.++.++..
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~ 398 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRID 398 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 8899999999999999999887632 2356788999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 378 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
+|.++...|++++|++.++++++++|++..+++.++..+...|++++|...++++++..|+++.+.
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-29 Score=293.61 Aligned_cols=364 Identities=13% Similarity=0.039 Sum_probs=307.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002431 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145 (922)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 145 (922)
+.......+..+.+.|++++|...++.++...|+++.++..++.+....|++++|+..++++++.+|+++.++..+|.++
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34445566777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 002431 146 KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMC 225 (922)
Q Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 225 (922)
...|++++|+..|+++++.+|++..++..++.++...|++++|+..+++++...|+++..+..++ .+...|++++|+..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~ 199 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDL 199 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888877776654 47778888888888
Q ss_pred HHHHHhhCCC--hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhh
Q 002431 226 YQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE----AIQCYNQCLSL 299 (922)
Q Consensus 226 ~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~----A~~~~~~al~~ 299 (922)
++++++..|. ......++.++...|++++|+..+++++..+|++..++..+|.++...|++++ |+..|+++++.
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 8888877653 34445567788888999999999999999999999899999999999999885 79999999999
Q ss_pred CCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 002431 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379 (922)
Q Consensus 300 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 379 (922)
+|+++.++..+|.++...|++++|+..+++++...|+++.++..++.++.+.|++++|+..|+++++.+|.+...+..+|
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887777788
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 380 NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
.++...|++++|+..|+++++.+|++. ...+++|...|.++++..+.....
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~~~~~~ 410 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVNLPPER 410 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcCCccch
Confidence 899999999999999999999988864 345567888888888776555433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-29 Score=291.71 Aligned_cols=457 Identities=13% Similarity=0.018 Sum_probs=375.1
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH--------
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNM-------- 73 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------- 73 (922)
++.+|..|+..|++++|+..++++++.+|.+...+..++.+ +++++|+..|+++++.+|++.+++..+
T Consensus 81 ~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~ 156 (987)
T PRK09782 81 TLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQN 156 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccc
Confidence 57889999999999999999999999999888888777666 889999999999999988865544333
Q ss_pred --------------------------------HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHH
Q 002431 74 --------------------------------ANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR-KGRLNEA 120 (922)
Q Consensus 74 --------------------------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A 120 (922)
+.+|.++|++++|++.+.++.+..|.+......++.+|.. +++ +++
T Consensus 157 ~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a 235 (987)
T PRK09782 157 ALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRL 235 (987)
T ss_pred hhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHH
Confidence 4556778999999999999999999999999999999998 477 888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-----------------------------------------
Q 002431 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYL----------------------------------------- 159 (922)
Q Consensus 121 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~----------------------------------------- 159 (922)
..+++..++ .++.++..++..+.+.|+.++|...++
T Consensus 236 ~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~ 312 (987)
T PRK09782 236 LALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNR 312 (987)
T ss_pred HHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHH
Confidence 888665333 445555555555555555555544442
Q ss_pred --------------------------------------------------------------------------------
Q 002431 160 -------------------------------------------------------------------------------- 159 (922)
Q Consensus 160 -------------------------------------------------------------------------------- 159 (922)
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~ 392 (987)
T PRK09782 313 QYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQS 392 (987)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccH
Confidence
Q ss_pred --------HHHhhCCCc---HHHHHHHHHHHHHcCC-------------------------H---HHHHHHHHHHHhcCC
Q 002431 160 --------EALRIQPTF---AIAWSNLAGLFMESGD-------------------------L---NRALQYYKEAVKLKP 200 (922)
Q Consensus 160 --------~al~~~p~~---~~~~~~la~~~~~~g~-------------------------~---~~A~~~~~~~l~~~p 200 (922)
.+....++. ......++.+|...+. + ..+...+.+++...|
T Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p 472 (987)
T PRK09782 393 REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMS 472 (987)
T ss_pred HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCC
Confidence 222210000 1111233333333322 1 112223333444567
Q ss_pred C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 201 T--FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 278 (922)
Q Consensus 201 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 278 (922)
. ++.++..+|.++.. ++.++|+..+.+++...|+......++..+...|++++|+..++++....|... .+..+|.
T Consensus 473 ~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~-a~~~la~ 550 (987)
T PRK09782 473 PSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNE-DLLAAAN 550 (987)
T ss_pred CCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcH-HHHHHHH
Confidence 7 89999999999987 899999999999999999866666778888899999999999999887766654 6788999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHH
Q 002431 279 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAI 358 (922)
Q Consensus 279 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 358 (922)
++...|++++|..+++++++.+|++...+..++......|++++|...|+++++.+|+ ...+..+|.++.+.|++++|+
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999998888877777777889999999999999999996 899999999999999999999
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 359 SCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 359 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
..|+++++++|+++.++.++|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|++++++.|+
T Consensus 630 ~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 630 SDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhcccCChhhHhHHHHHHHHH
Q 002431 439 FPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 469 (922)
Q Consensus 439 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 469 (922)
+..+............++..+.+.+.....+
T Consensus 710 ~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 710 QALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred CchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999988888888888888888777766554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-29 Score=297.16 Aligned_cols=402 Identities=18% Similarity=0.115 Sum_probs=349.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID 84 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 84 (922)
...++...|++++|++.+.++...+|....++..+|.++...|++++|+..++++++.+|.++.++..++.++...|+++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 34567889999999999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164 (922)
Q Consensus 85 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (922)
+|+..++++++..|++.. +..++.++...|++++|+..++++++..|++..++..++.++...+..++|+..++++..
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~- 178 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL- 178 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999999987775
Q ss_pred CCCcHH-----HHHHHHHHHH-----HcCCH---HHHHHHHHHHHhcCCCCHHH-------HHHHHHHHHHcCChHHHHH
Q 002431 165 QPTFAI-----AWSNLAGLFM-----ESGDL---NRALQYYKEAVKLKPTFPDA-------YLNLGNVYKALGMPQEAIM 224 (922)
Q Consensus 165 ~p~~~~-----~~~~la~~~~-----~~g~~---~~A~~~~~~~l~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~ 224 (922)
.|+... ....+..+.. ..+++ ++|++.++++++..|.++.. .......+...|++++|+.
T Consensus 179 ~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~ 258 (765)
T PRK10049 179 TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS 258 (765)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 544211 1122222222 22334 78999999998764444322 2221234467799999999
Q ss_pred HHHHHHhhCCC--hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 225 CYQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF----LEAYNNLGNALKDVGRVDEAIQCYNQCLS 298 (922)
Q Consensus 225 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 298 (922)
.|+++++..+. ..+...++.++...|++++|+..|++++..+|.. ......++.++...|++++|+..++++.+
T Consensus 259 ~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 259 EYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 99999987643 2344446999999999999999999999887765 45677788889999999999999999998
Q ss_pred hCCCC---------------hHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHH
Q 002431 299 LQPSH---------------PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363 (922)
Q Consensus 299 ~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 363 (922)
..|.. ..++..++.++...|++++|+..+++++...|.+..++..+|.++...|++++|++.+++
T Consensus 339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 87632 346788999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHH
Q 002431 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA 408 (922)
Q Consensus 364 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 408 (922)
+++++|++..+++.+|.++...|++++|...++++++..|+++.+
T Consensus 419 al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 419 AEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999999999999999999999998844
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-29 Score=290.18 Aligned_cols=384 Identities=13% Similarity=0.048 Sum_probs=336.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 8 QMYKSGSYKQALEHSNSVYERN---PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID 84 (922)
Q Consensus 8 ~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 84 (922)
.+.++.+++.---++....+.. ..+.......+..+.+.|++++|+..++.++...|+++.+++.++.+....|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHH
Confidence 3455666665544555443322 2345556667788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164 (922)
Q Consensus 85 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (922)
+|+..|+++++.+|+++.++..++.++...|++++|+..++++++.+|++..++..++.++...|++++|+..+++++..
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhH
Q 002431 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT-FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNL 242 (922)
Q Consensus 165 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l 242 (922)
.|++...+..++ .+...|++++|+..++++++..|. .......++.++...|++++|+..++++++..|+ ...+..+
T Consensus 174 ~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 174 VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 998888877664 478899999999999999888753 3445566688899999999999999999999888 8888999
Q ss_pred HHHHHHcCChHH----HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcC
Q 002431 243 ASTYYERGQADM----AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 318 (922)
Q Consensus 243 ~~~~~~~g~~~~----A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 318 (922)
+.++...|++++ |+..+++++..+|++..++..+|.++...|++++|+..++++++.+|+++.++..++.++.+.|
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVG 332 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 999999999986 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002431 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398 (922)
Q Consensus 319 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 398 (922)
++++|+..|++++...|++...+..++.++...|++++|+..|+++++.+|++. ...+++|+..|.++
T Consensus 333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~ 400 (656)
T PRK15174 333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQ 400 (656)
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHH
Confidence 999999999999999999887777789999999999999999999999999875 34556788888877
Q ss_pred HhhCCC
Q 002431 399 ITIRPT 404 (922)
Q Consensus 399 l~~~p~ 404 (922)
++..+.
T Consensus 401 ~~~~~~ 406 (656)
T PRK15174 401 ISAVNL 406 (656)
T ss_pred HHhcCC
Confidence 776544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-28 Score=285.24 Aligned_cols=456 Identities=13% Similarity=0.093 Sum_probs=328.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEP--RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 110 (922)
...+..+-..+.+.|++++|+++|+++.+.+. .+...+..+...+.+.|..++|..+|+.+.. | +..+|..+...
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a 446 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSV 446 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHH
Confidence 34444455556677888888888888776553 2344455566667777888888887777654 4 36677778888
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHcCCHHHH
Q 002431 111 YMRKGRLNEAAQCCRQALALN-PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP-TFAIAWSNLAGLFMESGDLNRA 188 (922)
Q Consensus 111 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A 188 (922)
+.+.|++++|.++++++.+.. ..+...+..+...|.+.|+.++|.++|+++.+... .+..+|..+...|.+.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 888888888888888877765 34567777888888888888888888888776542 3567778888888888888888
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----hCCChhHHHhHHHHHHHcCChHHHHHHHHHHH
Q 002431 189 LQYYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ----TRPNAIAFGNLASTYYERGQADMAILYYKQAI 263 (922)
Q Consensus 189 ~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 263 (922)
.++|+++.+.. ..+..+|..+...+.+.|++++|.++++++.. ..|+..+|..+...|.+.|++++|.++|+++.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888876543 22356778888888888888888888888764 35677778888888888888888888888877
Q ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcC-CCCchh
Q 002431 264 GCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGLSAP 340 (922)
Q Consensus 264 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 340 (922)
+.+ +.+..+|..+...|.+.|++++|.++|+++.+.. ..+..++..+...|.+.|++++|.++++++.+.. +.+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 554 3345577888888888888888888888877653 2245677778888888888888888888877664 446677
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHh
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRID-PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-PTMAEAHANLASAYKD 418 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 418 (922)
|+.++..|.+.|++++|.++|+++.+.. ..+...|..+...|.+.|++++|.+.|+++.+.. ..+..+|..+...+.+
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 8888888888888888888888776542 2356677888888888888888888888776653 2345677777788888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHh------------------HHHHHHHHHHHHHhccCCCC
Q 002431 419 SGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRD------------------RMFSEVEGIIRRQVNMSVLP 480 (922)
Q Consensus 419 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~------------------~~~~~~~~~~~~~~~~~~~p 480 (922)
.|++++|.++++++.+.+..+....++.+..+ |.+.++++. ....++..++++|+..|+.|
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl-c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGL-CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 88888888888888877666555444443322 112222221 22356888999999999999
Q ss_pred CCCCcccccCCC
Q 002431 481 SVQPFHAIAYPI 492 (922)
Q Consensus 481 ~~~~~~~l~~~~ 492 (922)
+..+|..++..+
T Consensus 846 d~~T~~~vL~cl 857 (1060)
T PLN03218 846 TMEVLSQVLGCL 857 (1060)
T ss_pred CHHHHHHHHHHh
Confidence 999998887433
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-26 Score=275.79 Aligned_cols=478 Identities=11% Similarity=0.057 Sum_probs=394.3
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNP--LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
.+-..+.+.|++++|+++|+++.+.+. .+...+..+...+.+.|..++|..+++.+.. .+...|..+...+.+.|
T Consensus 375 ~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 375 DAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQ 451 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHhCc
Confidence 445567789999999999999987663 3344455566778899999999999988765 46788999999999999
Q ss_pred CHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRP-NFADAWSNLASAYMRKGRLNEAAQCCRQALALNP-LLVDAHSNLGNLMKAQGLVQEAYSCYL 159 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (922)
++++|.++|+++.+... .+..+|..+...|.+.|+.++|.++|+++.+.+. .+..+|..+...|.+.|++++|.+.|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 99999999999988653 3578999999999999999999999999998763 478899999999999999999999999
Q ss_pred HHHhhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-
Q 002431 160 EALRIQ-PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL----KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR- 233 (922)
Q Consensus 160 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 233 (922)
++.+.. ..+..+|..+...|.+.|++++|.++++++... .| +..+|..+...|.+.|++++|.++|+++.+..
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 997753 345788999999999999999999999999763 34 36789999999999999999999999998864
Q ss_pred -CChhHHHhHHHHHHHcCChHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHh
Q 002431 234 -PNAIAFGNLASTYYERGQADMAILYYKQAIGC--DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTN 309 (922)
Q Consensus 234 -p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 309 (922)
|+...|..+...|.+.|++++|.++|+++... .|+ ..+|..+...+.+.|++++|.++++++.+.. +.+..++..
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 56889999999999999999999999999854 566 4589999999999999999999999999875 456789999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcC-CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHhCC
Q 002431 310 LGNIYMEWNMLPAAASYYKATLAVT-TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID-PLAADGLVNRGNTYKEIGR 387 (922)
Q Consensus 310 la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 387 (922)
+...|.+.|++++|.++|+++.+.. ..+..+|+.++..|.+.|++++|+++|+++.+.. ..+...+..+...+.+.|+
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999987653 4467889999999999999999999999998753 3566788888899999999
Q ss_pred HHHHHHHHHHHHhhCC-CcHHHHHHHHHHHH----hc-------------------CCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 388 VTDAIQDYIRAITIRP-TMAEAHANLASAYK----DS-------------------GHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 388 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~----~~-------------------g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
+++|.+++.++.+... .+..++..+..++. +. +..++|..+|+++++.+-.+....
T Consensus 770 le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence 9999999999998642 23445554443322 11 234679999999999876644444
Q ss_pred -HHHHHhhcccCChhhHhHHHHHHHHHHHHHhccCCCCCCCCcccccCCCC
Q 002431 444 -CNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPID 493 (922)
Q Consensus 444 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 493 (922)
..++.++...+. +..+..++..|...+..|+..+|+.++.+++
T Consensus 850 ~~~vL~cl~~~~~-------~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~ 893 (1060)
T PLN03218 850 LSQVLGCLQLPHD-------ATLRNRLIENLGISADSQKQSNLSTLVDGFG 893 (1060)
T ss_pred HHHHHHHhccccc-------HHHHHHHHHHhccCCCCcchhhhHHHHHhhc
Confidence 444433323233 3344555566666778888888988888764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-28 Score=287.23 Aligned_cols=454 Identities=13% Similarity=0.068 Sum_probs=387.5
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHc
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNP--LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP-RFAECYGNMANAWKEK 80 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~ 80 (922)
.....+.+.|++++|+++|+.+....+ .+...+..+..++.+.++++.|..++..+.+..- .+...+..+...|.+.
T Consensus 92 ~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~ 171 (697)
T PLN03081 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171 (697)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence 455678889999999999999886543 4678888999999999999999999999887542 3678899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP-LLVDAHSNLGNLMKAQGLVQEAYSCYL 159 (922)
Q Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (922)
|++++|.++|+++.+ | +..+|+.+...|.+.|++++|+++|+++.+.+. .+..++..+...+...|..+.+.+++.
T Consensus 172 g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 172 GMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred CCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 999999999999864 3 467899999999999999999999999988753 355677888888889999999999888
Q ss_pred HHHhhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCh
Q 002431 160 EALRIQ-PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ--TRPNA 236 (922)
Q Consensus 160 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~ 236 (922)
.+.+.. ..+..++..+...|.+.|++++|.++|+++. +.+..+|+.+...|.+.|+.++|+++|+++.+ ..|+.
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~ 325 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 877753 4466788899999999999999999999874 34678899999999999999999999999976 46778
Q ss_pred hHHHhHHHHHHHcCChHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 237 IAFGNLASTYYERGQADMAILYYKQAIGCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 237 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
.++..+...+.+.|++++|.+.+..+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+..+|+.+...|.
T Consensus 326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~ 402 (697)
T PLN03081 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHH
Confidence 899999999999999999999999998654 44556889999999999999999999998754 35678999999999
Q ss_pred HcCChhHHHHHHHHHHhcC-CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHhCCHHHHH
Q 002431 316 EWNMLPAAASYYKATLAVT-TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP--LAADGLVNRGNTYKEIGRVTDAI 392 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~ 392 (922)
+.|+.++|.++|+++.+.. ..+..++..+...+.+.|+.++|.++|+.+.+..+ .+...|..+...|.+.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999988764 45677899999999999999999999999986432 34567888999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 393 QDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 393 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
+.++++ ...| +..+|..+...+...|+++.|...+++++++.|++...+..++..|...|+|++|.++++++.+
T Consensus 483 ~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 483 AMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 988764 2334 4668999999999999999999999999999999888899999999999999888877776554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-28 Score=293.74 Aligned_cols=477 Identities=13% Similarity=0.073 Sum_probs=354.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 002431 7 HQMYKSGSYKQALEHSNSVYERNP-LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDL 85 (922)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 85 (922)
..+...+.++.|..++..+++..+ .+......+...|.+.|+.+.|...|+++. +.+..+|..+...|.+.|++++
T Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~ 170 (857)
T PLN03077 94 RLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDE 170 (857)
T ss_pred HHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHH
Confidence 334444555555555555554432 123333444444555555555555555442 1234455555555555555555
Q ss_pred HHHHHHHHHhc--CCC----------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002431 86 AIRYYLVAIEL--RPN----------------------------------FADAWSNLASAYMRKGRLNEAAQCCRQALA 129 (922)
Q Consensus 86 A~~~~~~al~~--~p~----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 129 (922)
|+.+|+++... .|+ +..++..+...|.+.|++++|..+|+++..
T Consensus 171 A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~ 250 (857)
T PLN03077 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR 250 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC
Confidence 55555555432 122 345667778888888888888888888643
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Q 002431 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ-PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK-PTFPDAYL 207 (922)
Q Consensus 130 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~ 207 (922)
.+...|..+...|.+.|++++|+..|.++.+.. ..+..++..+...+...|+.+.|.+++..+.+.. ..+..++.
T Consensus 251 ---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 251 ---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred ---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 345678888888888888888888888887652 3345677778888888888888888888887653 33567888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCC
Q 002431 208 NLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIG--CDPRFLEAYNNLGNALKDVGR 285 (922)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~ 285 (922)
.+...|.+.|++++|.++|+++. .|+..+|+.+...|.+.|++++|+++|+++.. ..|+.. ++..+...+.+.|+
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~--~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~-t~~~ll~a~~~~g~ 404 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRME--TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI-TIASVLSACACLGD 404 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCC--CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce-eHHHHHHHHhccch
Confidence 89999999999999999998875 46677889999999999999999999998864 456654 77777788889999
Q ss_pred HHHHHHHHHHHHhhCC-CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Q 002431 286 VDEAIQCYNQCLSLQP-SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 364 (922)
Q Consensus 286 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 364 (922)
+++|.++++.+.+... .+..++..+...|.+.|++++|.++|+++.+ .+..+|+.+...|.+.|+.++|+.+|+++
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998888753 4567888899999999999999999987653 46678999999999999999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 365 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 365 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
....+.+..++..+..++.+.|+.+.+.+.+..+++.. ..+..++..|...|.+.|+.++|.+.|+++ +.+...|
T Consensus 482 ~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~ 557 (857)
T PLN03077 482 LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSW 557 (857)
T ss_pred HhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhH
Confidence 87666677778888888888999999999888888765 334567788889999999999999999886 5567888
Q ss_pred HHHHHhhcccCChhhHhHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCHHHHHHHHHHHHh
Q 002431 444 CNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYAS 506 (922)
Q Consensus 444 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~ 506 (922)
+.++..+...|+.++|..+| ++|...|+.||..+|..++..|++.+.++++.++-+
T Consensus 558 n~lI~~~~~~G~~~~A~~lf-------~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELF-------NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHH-------HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 88999888888876665544 455567899999999999988998888888877644
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-28 Score=245.61 Aligned_cols=398 Identities=20% Similarity=0.233 Sum_probs=220.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
+..+-..|+-+++.|+|++||++|.++++..|+.+..|.+++-||...|++++.++...++++++|+.+.+++..+.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34566778888888999999999999999988888888889999999999999999999999999998889999999998
Q ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCcHHH------------------
Q 002431 113 RKGRLNEAAQCCRQALAL-NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR--IQPTFAIA------------------ 171 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~------------------ 171 (922)
..|++++|+.-..-.--. +-.+...-..+-..+.+++ ..-.++-++ ..|.-+.+
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-----~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA-----MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH-----HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccc
Confidence 999988887655433211 1112222112222222221 111122221 11111100
Q ss_pred -------HHHHHH----HHHH-cCCHHHHHHHHHHHHhcC----CCC---------HHHHHHHHHHHHHcCChHHHHHHH
Q 002431 172 -------WSNLAG----LFME-SGDLNRALQYYKEAVKLK----PTF---------PDAYLNLGNVYKALGMPQEAIMCY 226 (922)
Q Consensus 172 -------~~~la~----~~~~-~g~~~~A~~~~~~~l~~~----p~~---------~~~~~~l~~~~~~~g~~~~A~~~~ 226 (922)
.-.+.. ++.. ...|.+|...+.+..... ..+ ..++...|..+.-.|+...|...|
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 000000 0000 013334433333332210 000 223444444555555555555555
Q ss_pred HHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 002431 227 QRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 305 (922)
Q Consensus 227 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (922)
+++++.+|. ...|..++.+|.+.++.++....|.++..++|+++++|+..|.+++-++++++|+.-|+++++++|++.-
T Consensus 350 ~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~ 429 (606)
T KOG0547|consen 350 DAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY 429 (606)
T ss_pred HHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH
Confidence 555555554 2225555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCC------CHHHHHHHH
Q 002431 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL------AADGLVNRG 379 (922)
Q Consensus 306 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~ 379 (922)
.+..++.+.++++++++++..|+.+.+..|+.++.++..|.++..++++++|++.|++++++.|. ++..+...|
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 55555555555555555555555555555555555555555555555555555555555555554 333333333
Q ss_pred HHHHH-hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002431 380 NTYKE-IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL 435 (922)
Q Consensus 380 ~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 435 (922)
.+..+ .+++..|++.++++++++|....++..||.+..++|+.++|+++|+++..+
T Consensus 510 ~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 510 LLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22222 245555555555555555555555555555555555555555555555443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-27 Score=276.41 Aligned_cols=470 Identities=10% Similarity=0.039 Sum_probs=398.4
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERN-PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
..+...+.+.++++.|.+++..+.+.. ..+...+..+...|.+.|++++|.++|+++.+ .+..+|..+...|.+.|
T Consensus 127 ~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 127 DALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAG 203 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCc
Confidence 345677888999999999999988754 23688899999999999999999999998854 46778999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPN-FADAWSNLASAYMRKGRLNEAAQCCRQALALN-PLLVDAHSNLGNLMKAQGLVQEAYSCYL 159 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (922)
++++|+++|+++.+.... +..++..+...+...|..+.+.+++..+.+.. ..+..++..+...|.+.|++++|.+.|+
T Consensus 204 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 283 (697)
T PLN03081 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999876432 46788888999999999999999999888775 4466788999999999999999999998
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCh
Q 002431 160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT--RPNA 236 (922)
Q Consensus 160 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~ 236 (922)
++. +.+..+|+.++..|.+.|++++|+++|+++.+.. ..+..++..+...+.+.|++++|.+++..+.+. .|+.
T Consensus 284 ~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 284 GMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred hCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 764 4578899999999999999999999999997753 334678999999999999999999999999886 4568
Q ss_pred hHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHhHHHHHH
Q 002431 237 IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTNLGNIYM 315 (922)
Q Consensus 237 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 315 (922)
.++..+...|.+.|++++|.+.|+++.+ | +..+|..++..|.+.|+.++|+++|+++.+.. ..+..++..+...+.
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999999999864 3 45589999999999999999999999998764 345678889999999
Q ss_pred HcCChhHHHHHHHHHHhcC--CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 002431 316 EWNMLPAAASYYKATLAVT--TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 393 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 393 (922)
+.|..++|.++|+.+.+.. ..+...|..++.+|.+.|++++|.++++++- .. .+..+|..+...+...|+++.|..
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~-p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FK-PTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CC-CCHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999998643 3456689999999999999999999998763 22 456789999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHH--hhcccCC--hhhHhHHHHHHH
Q 002431 394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP--EATCNLLH--TLQCVCS--WEDRDRMFSEVE 467 (922)
Q Consensus 394 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~--~~~~~~~--~~~a~~~~~~~~ 467 (922)
.+++++++.|++...|..++.+|.+.|++++|.++++++.+.+-.-. -.|..+.. .-...|+ ..+....++.+.
T Consensus 516 ~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~ 595 (697)
T PLN03081 516 AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLD 595 (697)
T ss_pred HHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999998863211 11111100 0011122 345567788899
Q ss_pred HHHHHHhccCCCCCCC
Q 002431 468 GIIRRQVNMSVLPSVQ 483 (922)
Q Consensus 468 ~~~~~~~~~~~~p~~~ 483 (922)
++..+|.+.|..|+..
T Consensus 596 ~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 596 ELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHcCCCCCcc
Confidence 9999999999999853
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-26 Score=280.88 Aligned_cols=452 Identities=13% Similarity=0.081 Sum_probs=325.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP-RFAECYGNMANAWKEKG 81 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g 81 (922)
..+...|.+.|++++|..+|+++.. .+...|..+...|.+.|++++|+++|+++.+... .+..++..+...+...|
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 4567788889999999999988753 3557788888889999999999999988876532 24556666666666677
Q ss_pred CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELR-PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 160 (922)
+.+.|.+++..+.+.. +.+..++..+...|.+.|++++|.++|+++.. .+...|..+...|.+.|++++|++.|++
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7777777766666542 22455666666777777777777776666532 3445666666667777777777777766
Q ss_pred HHhhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhH
Q 002431 161 ALRIQ-PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP-TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIA 238 (922)
Q Consensus 161 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 238 (922)
+.+.. ..+...+..+...+.+.|++++|.++++.+.+... .+..++..+...|.+.|++++|.++|+++.+ ++..+
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~vs 457 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--KDVIS 457 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCeee
Confidence 65432 12233445555566666666666666666655432 2344555666666666666666666665532 34455
Q ss_pred HHhHHHHHHHcCChHHHHHHHHHHHhc-CCCc----------------------------------HHHHHHHHHHHHHc
Q 002431 239 FGNLASTYYERGQADMAILYYKQAIGC-DPRF----------------------------------LEAYNNLGNALKDV 283 (922)
Q Consensus 239 ~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~~----------------------------------~~~~~~l~~~~~~~ 283 (922)
|..+...|.+.|+.++|+..|+++... .|+. ...+..+...|.+.
T Consensus 458 ~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~ 537 (857)
T PLN03077 458 WTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC 537 (857)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHc
Confidence 666666666666666666666665532 2222 12334556778888
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcC-CCCchhhhhHHHHHHHcCCHHHHHHHHH
Q 002431 284 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGLSAPFNNLAVIYKQQGNYADAISCYN 362 (922)
Q Consensus 284 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 362 (922)
|+.++|.+.|+.+ +.+..+|+.+...|.+.|+.++|+++|+++.+.. ..+..++..+...+.+.|+.++|.++|+
T Consensus 538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 538 GRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred CCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 8888888888775 5678889999999999999999999999988764 4467778888889999999999999999
Q ss_pred HHHccC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 002431 363 EVLRID--PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 363 ~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 440 (922)
.+.+.. ..+...+..+..++.+.|++++|.+.++++ ...|+ ..+|..|...+...|+.+.|....+++++++|+++
T Consensus 614 ~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~ 691 (857)
T PLN03077 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSV 691 (857)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence 998543 244578899999999999999999999886 34554 67888888899999999999999999999999999
Q ss_pred HHHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 441 EATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 441 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
..+..+.+.|...|+|+++.++.+.+.+
T Consensus 692 ~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 692 GYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred chHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999999999999988877666554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-27 Score=237.34 Aligned_cols=400 Identities=18% Similarity=0.198 Sum_probs=321.6
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
..|..++++|+|++||++|.++++..|+.+.-+..++-||...|+|++.++...++++++|+...+++..+.++...|++
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccH
Confidence 46888999999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH-----------------HHHHhCC-------CC-HHH
Q 002431 84 DLAIRYYLVAIELR-PNFADAWSNLASAYMRKGRLNEAAQCCR-----------------QALALNP-------LL-VDA 137 (922)
Q Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-----------------~~l~~~p-------~~-~~~ 137 (922)
++|+....-..-.. -++...-..+-..+-+++. .++.+-+. ....-+| .+ .++
T Consensus 200 ~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~-~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 200 DEALFDVTVLCILEGFQNASIEPMAERVLKKQAM-KKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH-HHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 99987765433221 1112111111122222111 11111111 1111111 00 111
Q ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHhhC----CCc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002431 138 HSNLGNLMKAQ---GLVQEAYSCYLEALRIQ----PTF---------AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 201 (922)
Q Consensus 138 ~~~la~~~~~~---g~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 201 (922)
...-+.-.... ..|.+|...+.+..... ..+ ..++...|..++-.|+...|.+.|+++++++|.
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~ 358 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA 358 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc
Confidence 11111111111 24666666665544321 111 456677788888899999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 202 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNAL 280 (922)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 280 (922)
+...|..++.+|....+.++..+.|.++..++|. +.+|+..|++++-.+++++|+.-|++++.++|++...+..++.++
T Consensus 359 ~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~ 438 (606)
T KOG0547|consen 359 FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCAL 438 (606)
T ss_pred cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCC------CchhhhhHHHHHH-HcCC
Q 002431 281 KDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG------LSAPFNNLAVIYK-QQGN 353 (922)
Q Consensus 281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~-~~g~ 353 (922)
.++++++++...|+.+++..|+.++.+...+.++..++++++|.+.|++++.+.|. ++..+..-|.+.. -.++
T Consensus 439 Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d 518 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhh
Confidence 99999999999999999999999999999999999999999999999999999998 5555555444433 4689
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002431 354 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 354 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
+.+|+++++++++++|....++..+|.+..++|+.++|+++|+++..+..+
T Consensus 519 ~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999987544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-25 Score=259.57 Aligned_cols=441 Identities=14% Similarity=0.024 Sum_probs=335.6
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
.+..+...+++|+++.|+..|+++++.+|.++.....++.++...|+.++|+..+++++...|........+|.++...|
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 35678888899999999999999999888886444477888888899999999999988444445555555677888999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (922)
++++|++.|+++++.+|+++.++..++..+...++.++|++.++++...+|.+... ..++.++...++..+|++.++++
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999999999988888888888889999999999999998888875554 55666666677777799999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHHc---------C---ChHHHHHHHH
Q 002431 162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL--NLGNVYKAL---------G---MPQEAIMCYQ 227 (922)
Q Consensus 162 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~--~l~~~~~~~---------g---~~~~A~~~~~ 227 (922)
++.+|++..++..+..++...|-...|.+...+--.........+. ..+.-..+. . -.+.|+..++
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 9999999998888888888888888888776653322211111111 111111111 1 2345666666
Q ss_pred HHHh---hCCC-----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 228 RAVQ---TRPN-----AIAFGNLASTYYERGQADMAILYYKQAIGCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298 (922)
Q Consensus 228 ~~~~---~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 298 (922)
+++. ..|. ..+..-...++...+++.++++.|+.+.... +-...+....|..|...++.++|+.+|++++.
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 6666 3343 2233455566777888999999888887443 33344677788888899999999999988877
Q ss_pred hCC------CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCC---------------CchhhhhHHHHHHHcCCHHHH
Q 002431 299 LQP------SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG---------------LSAPFNNLAVIYKQQGNYADA 357 (922)
Q Consensus 299 ~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~la~~~~~~g~~~~A 357 (922)
..+ .+......|...|...+++++|..++++..+..|. .......++.++...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 542 22333567788888889999999999888875441 123455678888888999999
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002431 358 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 358 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 437 (922)
.+.+++++...|.+...+..+|.++...|.+.+|...++.+..++|++..+...++.++..+|++.+|....+++++..|
T Consensus 436 e~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 436 QKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 99999998889999999999999999999999999999888888898888888999999999999999999999999999
Q ss_pred CCHHHH
Q 002431 438 DFPEAT 443 (922)
Q Consensus 438 ~~~~~~ 443 (922)
+++.+.
T Consensus 516 e~~~~~ 521 (822)
T PRK14574 516 EDIPSQ 521 (822)
T ss_pred CchhHH
Confidence 887543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-25 Score=228.34 Aligned_cols=451 Identities=15% Similarity=0.087 Sum_probs=373.2
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRY 89 (922)
Q Consensus 10 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 89 (922)
....+-+.|+.++.++.+.-|.+.+.|..++. +.-|+.|.+.+.++-+.-|.+...|..-+..-...|+.+...++
T Consensus 387 VelE~~~darilL~rAveccp~s~dLwlAlar----LetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECCPQSMDLWLALAR----LETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred HhccChHHHHHHHHHHHHhccchHHHHHHHHH----HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 33444555666666666666666666655443 34466666666666666666666666666666666666665555
Q ss_pred HHHHHhc------------------------------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 90 YLVAIEL------------------------------------------RPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127 (922)
Q Consensus 90 ~~~al~~------------------------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 127 (922)
..+.+.. ..+....|..-++.+.+.+-++-|..+|..+
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 5554432 1122345666777788888888899999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 002431 128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL 207 (922)
Q Consensus 128 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 207 (922)
++..|.....|...+..-...|..++-..++++++...|.....|...+..+...|+...|..++.++++.+|++.++|+
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwl 622 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWL 622 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999988899988888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 208 NLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 287 (922)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~ 287 (922)
.-..+.....+++.|..+|.++....|....|..-+.....+++.++|+.+++++++..|+....|..+|+++.++++.+
T Consensus 623 aavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHH
Confidence 98899999999999999999999888888888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHcc
Q 002431 288 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367 (922)
Q Consensus 288 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 367 (922)
.|.+.|...++..|..+..|..++.+-.+.|+...|..+++++.-.+|.+...|......-.+.|+.++|.....++++.
T Consensus 703 ~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 703 MAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002431 368 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL 447 (922)
Q Consensus 368 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 447 (922)
.|.+...|..-....-+-++-..++ .|++....++.++...+.++....++++|.++|.++++.+|++.++|..+.
T Consensus 783 cp~sg~LWaEaI~le~~~~rkTks~----DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 783 CPSSGLLWAEAIWLEPRPQRKTKSI----DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFY 858 (913)
T ss_pred CCccchhHHHHHHhccCcccchHHH----HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHH
Confidence 9998888877776666666644444 445555677889999999999999999999999999999999999999999
Q ss_pred HhhcccCChhhHhHHHHHHHH
Q 002431 448 HTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 448 ~~~~~~~~~~~a~~~~~~~~~ 468 (922)
......|.-++...++.....
T Consensus 859 kfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 859 KFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHhCCHHHHHHHHHHHhc
Confidence 999999987777777766554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-25 Score=224.68 Aligned_cols=423 Identities=18% Similarity=0.201 Sum_probs=345.8
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCH---HH----------------HHHHHHHHHhc-
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDY---DM----------------CIARNEEALRL- 62 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~---~~----------------A~~~~~~al~~- 62 (922)
+.+|..++....++.|.-.++...+ ....+..-.+.+-.|.. ++ .+..+.+-++.
T Consensus 82 y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le~~ 156 (559)
T KOG1155|consen 82 YLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLESK 156 (559)
T ss_pred hhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHHHH
Confidence 5689999999999999988887643 22222222222222211 11 11112222211
Q ss_pred ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHH
Q 002431 63 ---EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP--LLVDA 137 (922)
Q Consensus 63 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~ 137 (922)
...++..++..|.++.+.|....|+..|..++...|-+..+|..|+.+.... +........-| .+.-.
T Consensus 157 ~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~-------e~~~~l~~~l~~~~h~M~ 229 (559)
T KOG1155|consen 157 HCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI-------EILSILVVGLPSDMHWMK 229 (559)
T ss_pred HhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH-------HHHHHHHhcCcccchHHH
Confidence 2346788899999999999999999999999999999999999888765432 22233332233 33444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002431 138 HSNLGNLMKAQGLVQEAYSCYLEALRI-QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 216 (922)
Q Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 216 (922)
-..++.++....+.++++.-++..... .|.+...-...|.+...+.++++|+..|+.+.+.+|-..+-.-...+++.-.
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 556778888888999999999988887 8888888899999999999999999999999999998766666666666665
Q ss_pred CChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 217 GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295 (922)
Q Consensus 217 g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (922)
.+-.+-.-+.+...+++.- +++...+|+.|...++.++|+.+|+++++++|+...+|..+|.-|..+++...|++.|+.
T Consensus 310 ~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 310 NDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred hhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 5555544455556666654 888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 002431 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 375 (922)
Q Consensus 296 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 375 (922)
+++++|.|..+|+.+|+.|..++...-|+-+|+++.+..|+++..|..||.+|.+.++.++|+++|++++..+..+..++
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhh-------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002431 376 VNRGNTYKEIGRVTDAIQDYIRAITI-------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 376 ~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 437 (922)
..+|.+|.++++.++|..+|++.++. .|+-..+...|+.-+.+.+++++|..+..+++.-++
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 99999999999999999999999983 455567778899999999999999998888776533
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-24 Score=252.28 Aligned_cols=442 Identities=16% Similarity=0.042 Sum_probs=368.2
Q ss_pred hhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002431 27 ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSN 106 (922)
Q Consensus 27 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 106 (922)
-..|..+...+..+.+.++.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|........
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~lla 107 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLAS 107 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence 35688899999999999999999999999999999999996554588899999999999999999999444555556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH
Q 002431 107 LASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186 (922)
Q Consensus 107 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 186 (922)
+|..+...|++++|++.|+++++.+|+++.++..++..+...++.++|++.++++...+|.+... ..++.++...++..
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~ 186 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH
Confidence 68899999999999999999999999999999999999999999999999999999999986654 55666666678887
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHH--hHHHHHHHc---------C---C
Q 002431 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG--NLASTYYER---------G---Q 251 (922)
Q Consensus 187 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~--~l~~~~~~~---------g---~ 251 (922)
+|++.++++++.+|++.+++..+..++...|-...|.+...+--..... ...+. ..+.-..+. + -
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 8999999999999999999999999999999999998777653322211 11111 111111111 1 2
Q ss_pred hHHHHHHHHHHHh---cCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHhHHHHHHHcCChhHH
Q 002431 252 ADMAILYYKQAIG---CDPRF----LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTNLGNIYMEWNMLPAA 323 (922)
Q Consensus 252 ~~~A~~~~~~~l~---~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A 323 (922)
.+.|+..+++++. ..|.. ..+......++...+++.++++.|+.+.... +-...+....|..|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 3556777777775 34432 2344566677888999999999999987665 33455788899999999999999
Q ss_pred HHHHHHHHhcCCC------CchhhhhHHHHHHHcCCHHHHHHHHHHHHccCC---------------CCHHHHHHHHHHH
Q 002431 324 ASYYKATLAVTTG------LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP---------------LAADGLVNRGNTY 382 (922)
Q Consensus 324 ~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~l~~~~ 382 (922)
..+|++++...++ .......|...|...+++++|..+++++.+..| +..+....++.++
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 9999999886532 223346788899999999999999999988544 3345778889999
Q ss_pred HHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHH
Q 002431 383 KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRM 462 (922)
Q Consensus 383 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 462 (922)
...|++.+|.+.+++.+...|.+..++..+|.++...|.+.+|.+.++.+..++|++..+....+.+....++|.++...
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHH
Q 002431 463 FSEVEGI 469 (922)
Q Consensus 463 ~~~~~~~ 469 (922)
.+.+.+.
T Consensus 507 ~~~l~~~ 513 (822)
T PRK14574 507 TDDVISR 513 (822)
T ss_pred HHHHHhh
Confidence 8877763
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-26 Score=228.98 Aligned_cols=453 Identities=21% Similarity=0.233 Sum_probs=376.6
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----HHHHHHHH
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYER--NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF-----AECYGNMA 74 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la 74 (922)
++.+|..|..+..+.+|+..|+-+++. .|+....-..+|.+++++.+|.+|+++|+.++..-|.- ...+..+|
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 578899999999999999999988754 47777777889999999999999999999999988862 56778889
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C---------CCHH-HHHHHH
Q 002431 75 NAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN--P---------LLVD-AHSNLG 142 (922)
Q Consensus 75 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p---------~~~~-~~~~la 142 (922)
..+.+.|+|++|+..|+...+..|+.. +-+++..+++..|+-++..+.|.+++..- + ++++ .+..-+
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 999999999999999999999999855 55667788899999999999999998752 1 1211 111111
Q ss_pred ---HHHH--HcCCHHHHHHHHHHHHhh-----CCCc--------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 002431 143 ---NLMK--AQGLVQEAYSCYLEALRI-----QPTF--------------------AIAWSNLAGLFMESGDLNRALQYY 192 (922)
Q Consensus 143 ---~~~~--~~g~~~~A~~~~~~al~~-----~p~~--------------------~~~~~~la~~~~~~g~~~~A~~~~ 192 (922)
..+. ...+-..|.+....+.++ .|+. ...-.+.+.-+.+.|+++.|++++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 1111 111222233333222222 2221 112234566788999999999999
Q ss_pred HHHHhcCCCCH-HHHHHHHHHHHHc--CChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002431 193 KEAVKLKPTFP-DAYLNLGNVYKAL--GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPR 268 (922)
Q Consensus 193 ~~~l~~~p~~~-~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 268 (922)
+-.-+.+.... .+-.++..+++.+ .++.+|..+...++..+.. ..+..+.|.+.+..|++++|.+.|++++..+..
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 87766554432 2445565555553 4788999999999887665 788889999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHH
Q 002431 269 FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY 348 (922)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 348 (922)
..++++++|..+..+|+.++|+++|-+.-.+--++.++++.++.+|....+..+|++++.++..+-|+++.++..|+.+|
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dly 602 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLY 602 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 002431 349 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS 428 (922)
Q Consensus 349 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 428 (922)
-+.|+-.+|.+++-......|.+.+..-.+|..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|++|.+.
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHhhcccCC
Q 002431 429 YKQALLLRPDFPEATCNLLHTLQCVCS 455 (922)
Q Consensus 429 ~~~al~~~p~~~~~~~~l~~~~~~~~~ 455 (922)
|+..-...|.+.+.+..++..+...|-
T Consensus 683 yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 683 YKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999888877766553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-25 Score=228.59 Aligned_cols=439 Identities=20% Similarity=0.231 Sum_probs=370.6
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
.+.+-...+.+|.-|+-+-+++.... .++.-.+.++++++-.++|..|......- +....+..+.+..+.++.+..++
T Consensus 21 ~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~ 98 (611)
T KOG1173|consen 21 RLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEW 98 (611)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHH
Confidence 34456677889999999999998877 77888899999999999999998887665 56667888999999999999999
Q ss_pred HHHHHHHHHH------HhcCCCc-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002431 84 DLAIRYYLVA------IELRPNF-------------------ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138 (922)
Q Consensus 84 ~~A~~~~~~a------l~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 138 (922)
++|..++... +..+|.+ ....+..|.+|....+.++|...|.+++..++...++.
T Consensus 99 ~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~ 178 (611)
T KOG1173|consen 99 DQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAF 178 (611)
T ss_pred HHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHH
Confidence 9999988732 1111111 12345567888888999999999999999988877766
Q ss_pred HHHHHHHHHcC-----------------CHHHHHHHHHHHHh----------hC--------CCcHHHHHHHHHHHHHcC
Q 002431 139 SNLGNLMKAQG-----------------LVQEAYSCYLEALR----------IQ--------PTFAIAWSNLAGLFMESG 183 (922)
Q Consensus 139 ~~la~~~~~~g-----------------~~~~A~~~~~~al~----------~~--------p~~~~~~~~la~~~~~~g 183 (922)
..+.....-.. ...+-++.+-++.. .. .++.......+..++..+
T Consensus 179 ~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c 258 (611)
T KOG1173|consen 179 EKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGC 258 (611)
T ss_pred HHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcC
Confidence 55543322111 11111111111110 01 234566777888999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHH
Q 002431 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQA 262 (922)
Q Consensus 184 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 262 (922)
++.+..++.+..++.+|-+...+-...-++...|+..+-..+-.++++..|+ +..|+.+|..|...|++.+|..+|.++
T Consensus 259 ~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKa 338 (611)
T KOG1173|consen 259 RFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKA 338 (611)
T ss_pred hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999999999999999887766666999999999988888999999999 899999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhh
Q 002431 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFN 342 (922)
Q Consensus 263 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 342 (922)
..++|....+|...|..+...+..++|+.+|..+-++.|....-...+|.-|...++++-|.++|.+++.+.|.++...+
T Consensus 339 t~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~ 418 (611)
T KOG1173|consen 339 TTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLH 418 (611)
T ss_pred hhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhh
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHccC----C---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 002431 343 NLAVIYKQQGNYADAISCYNEVLRID----P---LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA 415 (922)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~~~----p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 415 (922)
.+|.+.+..+.+.+|..+|+.++..- + .-...+.++|.++.+++++++|+..|++++.+.|.++.++..+|.+
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~i 498 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYI 498 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 99999999999999999999998431 1 2234689999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 002431 416 YKDSGHVEAAIKSYKQALLLRPDFPEATC 444 (922)
Q Consensus 416 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 444 (922)
|..+|+++.|++.|.+++.+.|++..+..
T Consensus 499 y~llgnld~Aid~fhKaL~l~p~n~~~~~ 527 (611)
T KOG1173|consen 499 YHLLGNLDKAIDHFHKALALKPDNIFISE 527 (611)
T ss_pred HHHhcChHHHHHHHHHHHhcCCccHHHHH
Confidence 99999999999999999999999865543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-23 Score=228.37 Aligned_cols=462 Identities=20% Similarity=0.232 Sum_probs=341.3
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
++..|..++..|++++|..++.++++++|.++.+|+.+|.+|.++|+.+++...+-.+-.++|++.+.|..++....++|
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV-----DAHSNLGNLMKAQGLVQEAYS 156 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~ 156 (922)
++++|+-+|.++++.+|.+.......+.+|.+.|+...|...|.+++...|... +.-...+..+...++-+.|++
T Consensus 222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998311 122334566667777788888
Q ss_pred HHHHHHhh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------------------------
Q 002431 157 CYLEALRI--QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK------------------------------------- 197 (922)
Q Consensus 157 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------------------------------------- 197 (922)
.++.++.. +......+..++.++.+...++.|.........
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 88777763 222333455666666666666666554443332
Q ss_pred ------------------------cC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHHhHHHHHHH
Q 002431 198 ------------------------LK---PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYE 248 (922)
Q Consensus 198 ------------------------~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~ 248 (922)
.+ .+.++.+..++.++...|++.+|+.+|..+....+. ...|..+|.+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 00 122446777888888888888888888888876655 6688888888888
Q ss_pred cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---------HHHHh----------
Q 002431 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP---------QALTN---------- 309 (922)
Q Consensus 249 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~---------- 309 (922)
.|.+++|++.|++++...|++.++...++.++.++|+.++|.+.+.....-++.+. .....
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 88888888888888888888888888888888888888888888777542221110 11111
Q ss_pred --------------------------------------------------------------------------------
Q 002431 310 -------------------------------------------------------------------------------- 309 (922)
Q Consensus 310 -------------------------------------------------------------------------------- 309 (922)
T Consensus 542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls 621 (895)
T KOG2076|consen 542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS 621 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence
Q ss_pred ----------HHHHHHHcCChhHHHHHHHHHHhc---------------------------------------------C
Q 002431 310 ----------LGNIYMEWNMLPAAASYYKATLAV---------------------------------------------T 334 (922)
Q Consensus 310 ----------la~~~~~~~~~~~A~~~~~~a~~~---------------------------------------------~ 334 (922)
+..++.+.+.+++|..+...++.. +
T Consensus 622 iddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~ 701 (895)
T KOG2076|consen 622 IDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLD 701 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhh
Confidence 222223333344443333222211 0
Q ss_pred CCCchhhh-----------------------------------hHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 002431 335 TGLSAPFN-----------------------------------NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379 (922)
Q Consensus 335 ~~~~~~~~-----------------------------------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 379 (922)
+.....|+ ..|..+...+.+.-|+..|-++...+|++|-.-..+|
T Consensus 702 ~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lg 781 (895)
T KOG2076|consen 702 VYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLG 781 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 00001111 1223334446678888888888888998888777777
Q ss_pred HHHHHhC----------CHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--------
Q 002431 380 NTYKEIG----------RVTDAIQDYIRAITIRPT--MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF-------- 439 (922)
Q Consensus 380 ~~~~~~g----------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------- 439 (922)
..+..+. ..-+++..+.+..++... ..++.+++|++|...|-..-|+.+|+++++..|.+
T Consensus 782 lafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~ 861 (895)
T KOG2076|consen 782 LAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDN 861 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCc
Confidence 6665431 234566666666665433 67899999999999999999999999999997543
Q ss_pred ----HHHHHHHHHhhcccCChhhHhHHH
Q 002431 440 ----PEATCNLLHTLQCVCSWEDRDRMF 463 (922)
Q Consensus 440 ----~~~~~~l~~~~~~~~~~~~a~~~~ 463 (922)
-.+.+|+...|.+.|+..-|..++
T Consensus 862 ~dLrkeAA~NL~LIY~~SGn~~lArqil 889 (895)
T KOG2076|consen 862 YDLRKEAAYNLHLIYKKSGNMQLARQIL 889 (895)
T ss_pred ccHHHHHHhhhhhhhccCCcHHHHHHHH
Confidence 256788999999988865554443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-24 Score=219.55 Aligned_cols=412 Identities=19% Similarity=0.230 Sum_probs=351.7
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH------HhcCCC-----------
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEA------LRLEPR----------- 65 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~----------- 65 (922)
+.+|++++-.|+|+.|..++..- +....+....+..+.++.+..++++|..++... +..++.
T Consensus 53 ~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~ 131 (611)
T KOG1173|consen 53 YWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSA 131 (611)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcc
Confidence 57899999999999998887765 445667889999999999999999999998732 111111
Q ss_pred --------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-----------------CHHHH
Q 002431 66 --------FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG-----------------RLNEA 120 (922)
Q Consensus 66 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------------~~~~A 120 (922)
.+...+..|.+|....+.++|...|.+++..++.+.++...+.....-.- ...+-
T Consensus 132 ~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~ 211 (611)
T KOG1173|consen 132 GEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVER 211 (611)
T ss_pred cccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHH
Confidence 13456778889999999999999999999999888777666554433211 11111
Q ss_pred HHHHHHHHH----------hC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 002431 121 AQCCRQALA----------LN--------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 182 (922)
Q Consensus 121 ~~~~~~~l~----------~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 182 (922)
++.+-++.. .+ .++.+.....+..+...+++.+..++.+..++.+|.+...+.....++.+.
T Consensus 212 l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el 291 (611)
T KOG1173|consen 212 LEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYEL 291 (611)
T ss_pred HHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHh
Confidence 111111110 01 246678888899999999999999999999999999988887777799999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHH
Q 002431 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQ 261 (922)
Q Consensus 183 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 261 (922)
|+..+-..+-.++.+..|+.+-.|+..|..|...|++.+|.++|.++..++|. ..+|...|..+...+..++|+..|..
T Consensus 292 ~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 292 GKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred cccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCC------
Q 002431 262 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT------ 335 (922)
Q Consensus 262 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------ 335 (922)
+-+.-|....-...+|.-|...++++.|.+.|.+++.+.|.+|-++..+|.+.+..+.+.+|..+|+.++..-+
T Consensus 372 Aarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~ 451 (611)
T KOG1173|consen 372 AARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK 451 (611)
T ss_pred HHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence 99999998888889999999999999999999999999999999999999999999999999999999984321
Q ss_pred -CCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 002431 336 -GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414 (922)
Q Consensus 336 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 414 (922)
.....+.+||.++.+.+++++|+..+++++.+.|.++.++..+|.+|..+|+++.|++.|.+++-++|++..+-..|+.
T Consensus 452 ~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 1334588999999999999999999999999999999999999999999999999999999999999998766555553
Q ss_pred H
Q 002431 415 A 415 (922)
Q Consensus 415 ~ 415 (922)
+
T Consensus 532 a 532 (611)
T KOG1173|consen 532 A 532 (611)
T ss_pred H
Confidence 3
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-23 Score=210.37 Aligned_cols=417 Identities=15% Similarity=0.121 Sum_probs=328.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC----------------CHH---HHHHHHHHHHhc
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG----------------DID---LAIRYYLVAIEL 96 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------------~~~---~A~~~~~~al~~ 96 (922)
.+.++..++..+.++.|.-.++..... ...+..-.+.+..| .+. ..+..+.+-++.
T Consensus 81 ~y~laks~fd~kEf~Raa~fL~~~~s~-----k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le~ 155 (559)
T KOG1155|consen 81 IYLLAKSYFDCKEFERAAFFLQNCKSK-----KSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLES 155 (559)
T ss_pred hhhhHhhhhhhHHHHHHHHHHHhcchH-----HHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHHH
Confidence 467889999999999998888765431 11111111111111 111 112222222221
Q ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHH
Q 002431 97 ----RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP--TFAI 170 (922)
Q Consensus 97 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~ 170 (922)
...++..++..|.++.+.|..+.|+..+..++...|-...+|..|+.+.... +........-| .+..
T Consensus 156 ~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~-------e~~~~l~~~l~~~~h~M 228 (559)
T KOG1155|consen 156 KHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI-------EILSILVVGLPSDMHWM 228 (559)
T ss_pred HHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH-------HHHHHHHhcCcccchHH
Confidence 2345667788888888999999999999999888888888888887765432 22222222223 3333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHH
Q 002431 171 AWSNLAGLFMESGDLNRALQYYKEAVKL-KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYE 248 (922)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~ 248 (922)
.-..+..++....+.++++.-.+..... .|.+...-...|.+.....++++|+..|+.+.+.+|- ..-.-...++++-
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 4455677788888889999888888887 7888888889999999999999999999999999886 4444444555555
Q ss_pred cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHH
Q 002431 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYK 328 (922)
Q Consensus 249 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 328 (922)
.++-.+-.-+-+.+..++.-.+++...+|+.|.-.++.++|+.+|+++++++|....+|..+|.-|.++++...|+..|+
T Consensus 309 ~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 55544444455556677777778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHH
Q 002431 329 ATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA 408 (922)
Q Consensus 329 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 408 (922)
++++.+|.+-.+|+.+|+.|.-++-..=|+-+|+++.+..|.++..|..+|.||.++++.++|+++|.+++.....+..+
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHhhcccCChhhHhHHHH
Q 002431 409 HANLASAYKDSGHVEAAIKSYKQALL-------LRPDFPEATCNLLHTLQCVCSWEDRDRMFS 464 (922)
Q Consensus 409 ~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 464 (922)
+..||.+|.++++.++|..+|++.++ ..|+-..+...|+......++|++|.....
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 99999999999999999999999999 345455566667777777777777765443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-24 Score=220.80 Aligned_cols=430 Identities=22% Similarity=0.259 Sum_probs=279.9
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
..+...+..|+|+.|+.+|.+++..+|.+...+.....+|..+|+|++|++.-.+.++++|..+..|..+|..+.-.|+|
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 002431 84 DLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ-GLVQEAYSCYLEAL 162 (922)
Q Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al 162 (922)
++|+..|.+.++.+|++...+..++.++... +.. .+.|. .+..+..+...-... -..+.+.....+.+
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~~~-~~~~~--------~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLED--YAA-DQLFT--------KPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--HHh-hhhcc--------CcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 9999999999999999999999999988221 111 11110 111111111100000 00111122222222
Q ss_pred hhCCCcHHHHHH-------HHHHHHHcCCHHHHHHHH---------HHHHhcCCC------------CHHHHHHHHHHHH
Q 002431 163 RIQPTFAIAWSN-------LAGLFMESGDLNRALQYY---------KEAVKLKPT------------FPDAYLNLGNVYK 214 (922)
Q Consensus 163 ~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~---------~~~l~~~p~------------~~~~~~~l~~~~~ 214 (922)
..+|.+...+.+ ++.+....-....+.... .+.....|. -..-...+|....
T Consensus 156 ~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 156 QKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred hcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 222222211111 000000000000000000 000000000 0112345666666
Q ss_pred HcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHcCCHH
Q 002431 215 ALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL-------EAYNNLGNALKDVGRVD 287 (922)
Q Consensus 215 ~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~l~~~~~~~g~~~ 287 (922)
+..++..|++.|..+++++.+...+.+.+.+|+..|.+.+.+....++++...... .+...+|..+.+.++++
T Consensus 236 kkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred HhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence 66666666666666666663355556666666666666666666666554332221 22333555666677777
Q ss_pred HHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHcc
Q 002431 288 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367 (922)
Q Consensus 288 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 367 (922)
.|+.+|++++...-. ..+..+.+..+++....+...-.+|.-..-...-|..+++.|+|.+|+..|.++++.
T Consensus 316 ~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 777777776654332 445555566677777777666667766666666677778888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002431 368 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL 447 (922)
Q Consensus 368 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 447 (922)
+|+++..|.+++.||.++|.+..|+...+++++++|+...+|.+-|.++..+.+|++|.+.|+++++.+|++..+...+.
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYR 467 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888887777776666
Q ss_pred Hhhcc
Q 002431 448 HTLQC 452 (922)
Q Consensus 448 ~~~~~ 452 (922)
.+...
T Consensus 468 rc~~a 472 (539)
T KOG0548|consen 468 RCVEA 472 (539)
T ss_pred HHHHH
Confidence 66554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=234.78 Aligned_cols=305 Identities=21% Similarity=0.279 Sum_probs=277.3
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002431 137 AHSNLGNLMK--AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214 (922)
Q Consensus 137 ~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 214 (922)
.+..+|..+. .+-+..+|+..|++.-...++...+...+|..|+++++|++|..+|+.+-+..|-..+..-....+++
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 3444454444 34567899999999777778888899999999999999999999999999998876665555666666
Q ss_pred HcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002431 215 ALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293 (922)
Q Consensus 215 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 293 (922)
...+.-+--.+.+.+++.+|+ +++|..+|.+|.-+++.+.|++.|++++.++|....+|..+|.-+....+++.|..+|
T Consensus 399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f 478 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF 478 (638)
T ss_pred HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence 666655555566677788888 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 002431 294 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD 373 (922)
Q Consensus 294 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 373 (922)
++++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++-
T Consensus 479 r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 479 RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (922)
..+..|.++..++++++|+..+++..++.|++..+++.+|.+|.+.|+.+.|+..|.-|..++|.-..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999998654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-21 Score=204.46 Aligned_cols=439 Identities=15% Similarity=0.089 Sum_probs=402.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------------------
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE------------------- 63 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------- 63 (922)
+.+-..|.+..-|+.|.+.++++-+.-|.+..+|..-+..-...|+.+...++..+.+..-
T Consensus 410 ~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 410 MDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3455677888899999999999999999999999999999999999888888877765321
Q ss_pred -----------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 002431 64 -----------------------PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120 (922)
Q Consensus 64 -----------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 120 (922)
.+.-..|..-+..+.+.+.++-|+.+|..+++.+|.....|...+..-..-|..++-
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence 012345667777888888999999999999999999999999999998899999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002431 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP 200 (922)
Q Consensus 121 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 200 (922)
..++++++...|.....|...+..+...|+...|..++.++++.+|++...|.....+.....+++.|..+|.++....|
T Consensus 570 ~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg 649 (913)
T KOG0495|consen 570 EALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG 649 (913)
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002431 201 TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 279 (922)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 279 (922)
. ..+|+.-+.+...+++.++|+++++++++..|+ ...|..+|+++.+.++.+.|.+.|..-++..|.....|..++.+
T Consensus 650 T-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 650 T-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred c-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 6 678888999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHH
Q 002431 280 LKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359 (922)
Q Consensus 280 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 359 (922)
-.+.|+.-.|...++++.-.+|.+...|.....+-.+.|+.++|.....++++..|++...|..-+.+.-.-++-..++.
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887777766666555555
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 360 CYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 360 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
.++ ....++.++...|..+....++++|.+.|+++++.+|++.++|..+-..+...|.-++-.++|.+.....|.+
T Consensus 809 ALk----kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 809 ALK----KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred HHH----hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 444 4567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 002431 440 PEATCNL 446 (922)
Q Consensus 440 ~~~~~~l 446 (922)
...|...
T Consensus 885 G~~W~av 891 (913)
T KOG0495|consen 885 GELWQAV 891 (913)
T ss_pred CcHHHHH
Confidence 8887654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-23 Score=229.33 Aligned_cols=300 Identities=19% Similarity=0.170 Sum_probs=236.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF----ADAWSNL 107 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 107 (922)
.....+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 344566677788888888888888888888888888888888888888888888888888887753322 3467788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHHc
Q 002431 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA-----IAWSNLAGLFMES 182 (922)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~ 182 (922)
|.+|...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+. ..+..++..+...
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 88888888888888888888888887888888888888888888888888888887766542 2456778888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHHhHHHHHHHcCChHHHHHHHH
Q 002431 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYK 260 (922)
Q Consensus 183 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 260 (922)
|++++|+..++++++..|++..++..++.++...|++++|++.++++.+..|+ ...+..++.+|...|++++|+..++
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888887776 4567788888888888888888888
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHH--cCChhHHHHHHHHHHh
Q 002431 261 QAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME--WNMLPAAASYYKATLA 332 (922)
Q Consensus 261 ~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~ 332 (922)
++++..|+.. .+..++.++.+.|++++|...++++++..|++......+...+.. .|+..+++..++++++
T Consensus 274 ~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 274 RALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 8888888765 447888888888888888888888888888876554444433322 4577788777776664
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=209.37 Aligned_cols=460 Identities=19% Similarity=0.208 Sum_probs=372.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhh------------CCC------chHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCcH
Q 002431 8 QMYKSGSYKQALEHSNSVYER------------NPL------RTDNLLLLGAIYYQLHDYDMCIARNEEALRL--EPRFA 67 (922)
Q Consensus 8 ~~~~~g~~~~A~~~~~~~l~~------------~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 67 (922)
..-..|++.+|+.-.+.+-.. -|. ...+++.++.-|....-+.+|+..|+-.++. .|+..
T Consensus 158 ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag 237 (840)
T KOG2003|consen 158 IANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAG 237 (840)
T ss_pred HHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCc
Confidence 344567888887766543211 111 2456788999999889999999999988754 56777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002431 68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPN-----FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLG 142 (922)
Q Consensus 68 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 142 (922)
..-..+|.+++++.+|.+|+++|+.++..-|. ....+.++|..+.+.|+|+.|+..|+.+.+..|+.. +-+++.
T Consensus 238 ~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~ 316 (840)
T KOG2003|consen 238 ILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLI 316 (840)
T ss_pred eeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhh
Confidence 77888999999999999999999999998776 245677888899999999999999999999998654 455677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh--------------CCCcHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhc-----CC
Q 002431 143 NLMKAQGLVQEAYSCYLEALRI--------------QPTFAIAWSNLAGL-F--MESGDLNRALQYYKEAVKL-----KP 200 (922)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~~~~~la~~-~--~~~g~~~~A~~~~~~~l~~-----~p 200 (922)
.+++..|+-++..+.|.+++.+ +|++...-..+-.- + ....+-..|.+....+.++ .|
T Consensus 317 i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~ 396 (840)
T KOG2003|consen 317 ICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAP 396 (840)
T ss_pred hhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcccccc
Confidence 8888999999999999999875 12221111111111 1 1112223333333333221 22
Q ss_pred CC--------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHHhHHHHHHHc--CChHHHH
Q 002431 201 TF--------------------PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYER--GQADMAI 256 (922)
Q Consensus 201 ~~--------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~--g~~~~A~ 256 (922)
+. .+.-.+.+-.+.+.|+++.|+++++-.-+.+.. ..+-.++..+++.+ .++..|.
T Consensus 397 ~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aq 476 (840)
T KOG2003|consen 397 DFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQ 476 (840)
T ss_pred chhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHH
Confidence 21 122345667788999999999998876655443 55666777777664 4788999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 002431 257 LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG 336 (922)
Q Consensus 257 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 336 (922)
.+...++..+.-++.+..+.|++.+..|++++|.+.|++++..+....++++++|..+...|+.++|+.+|-+.-.+--+
T Consensus 477 qyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n 556 (840)
T KOG2003|consen 477 QYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN 556 (840)
T ss_pred HHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 002431 337 LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY 416 (922)
Q Consensus 337 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 416 (922)
+..++..++.+|..+.+..+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.++.-+|+..|
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy 636 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY 636 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 417 KDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 417 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
....-+++|+.+|+++--+.|+.......++.++...|+|..+...++....
T Consensus 637 idtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999999998877777777778888998888877776554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=227.08 Aligned_cols=305 Identities=20% Similarity=0.255 Sum_probs=276.4
Q ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 002431 103 AWSNLASAYMR--KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180 (922)
Q Consensus 103 ~~~~la~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 180 (922)
.+..+|..|.. +-+..+|+..|++.-...++...++..+|..|+.+++|++|..+|+.+-+..|--....-.+..++.
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 44455555543 4567899999999777778888888999999999999999999999999998876666566666666
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHH
Q 002431 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYY 259 (922)
Q Consensus 181 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 259 (922)
...+.-+--.+.+..++.+|+.|+.|..+|++|.-+++++.|++.|+++++++|+ ..+|..+|.-+....+++.|...|
T Consensus 399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f 478 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF 478 (638)
T ss_pred HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence 6666555556667788889999999999999999999999999999999999997 899999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 002431 260 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA 339 (922)
Q Consensus 260 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 339 (922)
++++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++-
T Consensus 479 r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 479 RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 407 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 407 (922)
..+..|.++...+++++|+..+++..++-|+...+++.+|.+|.+.|+.+.|+..|.-|.+++|.-..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999987443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-22 Score=209.69 Aligned_cols=412 Identities=21% Similarity=0.246 Sum_probs=318.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 115 (922)
....|+..+..|+++.|+.+|.+++.++|.+...|.+...+|..+|+|++|++.-.+..+++|.-+..|..+|..+.-.|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 002431 116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES-GDLNRALQYYKE 194 (922)
Q Consensus 116 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~ 194 (922)
+|++|+..|.+.++.+|++...+..++.++... +. +.+.| ..+..|..+...-... -..+.+.....+
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~~-~~~~~--------~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLED--YA-ADQLF--------TKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--HH-hhhhc--------cCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 999999999999999999999999998887211 11 11111 1122232222211111 112233333333
Q ss_pred HHhcCCCCHHHHH-------HHHHHHHHcCCh-HHHHHHH---------HHHHhhCC-------------ChhHHHhHHH
Q 002431 195 AVKLKPTFPDAYL-------NLGNVYKALGMP-QEAIMCY---------QRAVQTRP-------------NAIAFGNLAS 244 (922)
Q Consensus 195 ~l~~~p~~~~~~~-------~l~~~~~~~g~~-~~A~~~~---------~~~~~~~p-------------~~~~~~~l~~ 244 (922)
.+..+|.+...+. .++.+.. .+.. ..+.... .+..+..| .......+|.
T Consensus 154 ~~~~~p~~l~~~l~d~r~m~a~~~l~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 154 IIQKNPTSLKLYLNDPRLMKADGQLKG-VDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred HhhcCcHhhhcccccHHHHHHHHHHhc-CccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 3444443322221 1111110 0000 0000000 00000001 1234567899
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-------HHHHhHHHHHHHc
Q 002431 245 TYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP-------QALTNLGNIYMEW 317 (922)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~ 317 (922)
..++..+++.|++.|.+++.++ .+...+.+.+.++...|.+.+.+....++++..-... .+...+|..|.+.
T Consensus 233 aaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999999999 8887889999999999999999999999888754432 2444567788889
Q ss_pred CChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002431 318 NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397 (922)
Q Consensus 318 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 397 (922)
++++.|+.+|++++..... ..++.+....++++...+...-.+|.-..--...|..+++.|+|.+|+..|.+
T Consensus 312 ~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred HhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999998875543 56777888899999999999889998888888889999999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 398 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 398 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
+++.+|+++..|.+.+.||.++|++..|+...+++++++|++..++..-+.++..+.+|+.+...|.+..+
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999988876653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-22 Score=225.13 Aligned_cols=299 Identities=17% Similarity=0.177 Sum_probs=234.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHH
Q 002431 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL----VDAHSNLG 142 (922)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la 142 (922)
....+.+|..+...|++++|+..|+++++.+|++..++..++.++...|++++|+..+++++...+.. ...+..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 44556667788888888888888888888888888888888888888888888888888887753322 24677888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcC
Q 002431 143 NLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD-----AYLNLGNVYKALG 217 (922)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~l~~~~~~~g 217 (922)
.++...|++++|...|+++++..|.+..++..++.++...|++++|++.++++++..|.+.. .+..++..+...|
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888888888888888888888888888888887765432 4567788888888
Q ss_pred ChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 218 MPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF-LEAYNNLGNALKDVGRVDEAIQCYNQ 295 (922)
Q Consensus 218 ~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (922)
++++|+..|+++++..|+ ...+..++.++...|++++|++.++++++.+|.+ ..++..++.++...|++++|...+++
T Consensus 195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888888888777 6677888888888888888888888888777765 34677788888888888888888888
Q ss_pred HHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHH--cCCHHHHHHHHHHHHc
Q 002431 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ--QGNYADAISCYNEVLR 366 (922)
Q Consensus 296 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 366 (922)
+++..|+... +..++.++.+.|++++|...++++++..|++......+...+.. .|+..+|+..++++++
T Consensus 275 ~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 275 ALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 8888886644 47788888888888888888888888888776444333333222 4577888887777765
|
|
| >PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=224.48 Aligned_cols=327 Identities=12% Similarity=0.077 Sum_probs=201.3
Q ss_pred eeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHH------HHHhccCceEECCCCCHHHHHHHHHhCC
Q 002431 539 VGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQ------RTQSEAEHFVDVSAMSSDMIAKLINEDK 612 (922)
Q Consensus 539 ig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 612 (922)
|-.+.-.+.......|+..-++. ++++++.|+--+.+. +.. .++....+--++-..+-..++..|++.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~r 280 (578)
T PRK15490 206 VELIIRSLTPELRQDFFLKEVLE---EQVEVLEIAKITGNL--FDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERK 280 (578)
T ss_pred eeEEEeecCcccCcchhHHHHHh---cCCceEEeeccchhh--hhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcC
Confidence 44555555444444455444443 567777776433111 111 1222222222222224578999999999
Q ss_pred CeEEEcCCCcCCCCchhhh---hcCC--CceEEecc-ccCCCCCCCcc----------c--EEEecCccCCcCccC----
Q 002431 613 IQILINLNGYTKGARNEIF---AMQP--APIQVSYM-GFPGTTGASYI----------D--YLVTDEFVSPLRYAH---- 670 (922)
Q Consensus 613 ~dil~~~~~~~~~~~~~~~---~~~~--apvq~~~~-g~~~t~g~~~~----------d--~~~~d~~~~~~~~~~---- 670 (922)
|||+ ||+..+..++ +.+. .|+.++.. |++...+-..+ + +..+| ++..+....
T Consensus 281 pDIV-----Ht~~~~a~l~g~laA~lagvpviv~~~h~~~~~~~~r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~l~ 354 (578)
T PRK15490 281 LDYL-----SVWQDGACLMIALAALIAGVPRIQLGLRGLPPVVRKRLFKPEYEPLYQALAVVPGVD-FMSNNHCVTRHYA 354 (578)
T ss_pred CCEE-----EEcCcccHHHHHHHHHhcCCCEEEEeecccCCcchhhHHHHHHHHhhhhceeEecch-hhhccHHHHHHHH
Confidence 9999 9987665444 2333 47766642 33322211100 1 22233 333332211
Q ss_pred ----CCccceeecCCccccCCCccccccCCCCCCC-CCcC--CCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCC
Q 002431 671 ----IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQ-PKRS--DYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVP 741 (922)
Q Consensus 671 ----~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~-~~r~--~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p 741 (922)
.-.+++..+|+..-.. ++.+....+ ..|. ..+++++.+++|+++|+ .|++..+++++.++++..|
T Consensus 355 ~~lgip~~KI~VIyNGVD~~------rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~p 428 (578)
T PRK15490 355 DWLKLEAKHFQVVYNGVLPP------STEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQHHP 428 (578)
T ss_pred HHhCCCHHHEEEEeCCcchh------hcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCC
Confidence 1233444444433211 111111001 1222 34556667788888875 5999999999999999999
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecC
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPL 820 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~ 820 (922)
+.+|+|+|+|+. ++.+++.++++|+ .++|+|+|. ..+...+|+.+|||+.||.++| |++++|||+||+|||+...
T Consensus 429 dirLvIVGdG~~-~eeLk~la~elgL-~d~V~FlG~--~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdv 504 (578)
T PRK15490 429 ATRFVLVGDGDL-RAEAQKRAEQLGI-LERILFVGA--SRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPA 504 (578)
T ss_pred CeEEEEEeCchh-HHHHHHHHHHcCC-CCcEEECCC--hhhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCC
Confidence 999999999986 7899999999999 599999998 4567778999999999999999 9999999999999995543
Q ss_pred CcchhhhHHHHHHhcCCCCccccC--CHHHHHH---HHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 821 EKMATRVAGSLCLATGLGEEMIVN--SMKEYEE---RAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 821 ~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~---~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
.....-+. -|.++ +++. |.+++.+ .+.++..+.+.+..++++.++.+ ...||.+.++.+++++|..
T Consensus 505 GG~~EiV~------dG~nG-~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V--~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 505 GGSAECFI------EGVSG-FILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFL--QERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred CCcHHHcc------cCCcE-EEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhCCHHHHHHHHHHHHHh
Confidence 32222111 14555 4432 3444433 23455555555666778888876 4579999999999999853
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-21 Score=208.18 Aligned_cols=436 Identities=18% Similarity=0.202 Sum_probs=340.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
...++..|+.++..|++++|..++.++++++|.++.+|+.||.+|.++|+.+++...+-.+-.++|++.+.|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 45567778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHHcCCHHH
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA-----IAWSNLAGLFMESGDLNR 187 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~ 187 (922)
++|++++|.-+|.++++.+|.+.......+.+|.+.|+...|...|.+++...|... ......+..+...++-+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999999999999999998332 223445777888888899
Q ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----------------------h-------CCCh
Q 002431 188 ALQYYKEAVKLK--PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ----------------------T-------RPNA 236 (922)
Q Consensus 188 A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------~-------~p~~ 236 (922)
|++.++.++... ....+.+..++.++.+...++.|......... . .++.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 999999998833 33445677889999999999999888776655 0 0111
Q ss_pred hH-HHhHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHhHHHH
Q 002431 237 IA-FGNLASTYYERGQADMAILYYKQAIGCDP-RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS-HPQALTNLGNI 313 (922)
Q Consensus 237 ~~-~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 313 (922)
.+ ...++.+..+.++..+++..+..--...| +..+.+..++.++...|++.+|+.++..+....+. +..+|+.+|.+
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 22 34444445555555555555443322223 45678999999999999999999999999887553 46799999999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC---------HHHHHHHHHHHHH
Q 002431 314 YMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---------ADGLVNRGNTYKE 384 (922)
Q Consensus 314 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~ 384 (922)
|...|.+++|+..|++++...|++..+...|+.++.++|+.++|.+.+..+..-++.+ ......+..++..
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999877444322 2356677788888
Q ss_pred hCCHHHHHHHHHHHHhh-------CCC-----------------------------------------------------
Q 002431 385 IGRVTDAIQDYIRAITI-------RPT----------------------------------------------------- 404 (922)
Q Consensus 385 ~g~~~~A~~~~~~al~~-------~p~----------------------------------------------------- 404 (922)
.|+.++=+..-...+.. .|.
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~ 618 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR 618 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence 88776644322222110 000
Q ss_pred --cH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCHHHH----HHHHHhhcccCChhhHhHHHHHHHH
Q 002431 405 --MA----EAHANLASAYKDSGHVEAAIKSYKQALLLRP--DFPEAT----CNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 405 --~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
.. +....+..++.+.+++++|..+...+++..- .++... +-.+.+.....+|.++...++.+..
T Consensus 619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~ 694 (895)
T KOG2076|consen 619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT 694 (895)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 01 2344567788899999999999998888643 233322 2233344455677777666665554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-21 Score=191.03 Aligned_cols=438 Identities=15% Similarity=0.109 Sum_probs=343.2
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhh--------------------CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYER--------------------NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE 63 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~--------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 63 (922)
.++...+...+|..|...|..++.. .|.+.+.....+.||...++-+.|+.........
T Consensus 48 yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t- 126 (564)
T KOG1174|consen 48 YLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPT- 126 (564)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCcc-
Confidence 4555666677777777777776542 1234566677888888888888888776654322
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-H--HH
Q 002431 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDA-H--SN 140 (922)
Q Consensus 64 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~--~~ 140 (922)
...+.....++..+-.-++-.++.-.|...+...|--......+...- ..-.+.+-... ..+...|..... . ..
T Consensus 127 ~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~--v~g~e~~S~~m-~~~~~~~~~dwls~wika 203 (564)
T KOG1174|consen 127 LRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELG--VNGNEINSLVM-HAATVPDHFDWLSKWIKA 203 (564)
T ss_pred ccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHh--hcchhhhhhhh-hheecCCCccHHHHHHHH
Confidence 123455556666666666655666666666655543222222111111 11111111111 112233333322 2 23
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q 002431 141 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 220 (922)
Q Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~ 220 (922)
++.++....-+..+..++-......|++...+..++.+++..|++++|+..|++...++|......-..|.++...|+++
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHh
Confidence 34444444445555556666667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 221 EAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299 (922)
Q Consensus 221 ~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 299 (922)
+-..+...++..... ..-|+.-+...+..+++..|+.+-++++..+|++.+++...|.++...|+.++|.-.|+.+..+
T Consensus 284 ~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 284 QDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred hHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 999999998887744 7778888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHH-HHHH-HcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 002431 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLA-VIYK-QQGNYADAISCYNEVLRIDPLAADGLVN 377 (922)
Q Consensus 300 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~ 377 (922)
.|.+-+.|..+..+|...|++.+|...-..++...|.++.++..+| .++. .-.--++|.+++++.++++|....+-..
T Consensus 364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~ 443 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNL 443 (564)
T ss_pred chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHH
Confidence 9999999999999999999999999999999999999999888886 4443 3344689999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002431 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (922)
Q Consensus 378 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (922)
++..+...|++++++..+++.+...|++ ..+..||.++...+.+++|++.|..++.++|++..+...+
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 9999999999999999999999999874 5889999999999999999999999999999987765543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-22 Score=190.89 Aligned_cols=317 Identities=17% Similarity=0.214 Sum_probs=184.6
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
++++..++..|++..|+..|-.+++.+|++..+++..|..|+.+|+-.-|+..+.+++++.|+...+....|.++.++|+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 83 IDLAIRYYLVAIELRPNFA---DAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYL 159 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (922)
+++|...|+++++.+|++. ++...++.+-. ...+......+...|+...|+....
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e----------------------~~~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQE----------------------HWVLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHH----------------------HHHHHHHHHHHhcCCchhhHHHHHH
Confidence 5555555555555555321 11111110000 0012222333344455555555555
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh---
Q 002431 160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNA--- 236 (922)
Q Consensus 160 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--- 236 (922)
.+++..|-+...+...+.+|...|+...|+.-++.+-++..++.+.++.+..+++..|+.+.++...+++++.+|+.
T Consensus 180 ~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 180 HLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred HHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555541
Q ss_pred -hHHHh---------HHHHHHHcCChHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002431 237 -IAFGN---------LASTYYERGQADMAILYYKQAIGCDPRFLE----AYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302 (922)
Q Consensus 237 -~~~~~---------l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 302 (922)
..|.. -+....+.++|.++++..++.++.+|.... ....+..++...+++.+|++.+.++++.+|+
T Consensus 260 f~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~ 339 (504)
T KOG0624|consen 260 FPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD 339 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence 11111 122334567788888888888888887432 3344566777778888888888888888888
Q ss_pred ChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhh
Q 002431 303 HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPF 341 (922)
Q Consensus 303 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 341 (922)
+..++...+.+|.....|+.|+.-|+++.+.++++..+.
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 888888888888888888888888888888888776543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-21 Score=203.98 Aligned_cols=437 Identities=16% Similarity=0.117 Sum_probs=324.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002431 6 AHQMYKSGSYKQALEHSNSVYER-----NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEK 80 (922)
Q Consensus 6 a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 80 (922)
...+.-..+.++++-..-..+.. -.+++..+-.+...+...|+++.+.+.|++++...-...+.|+.++.+|...
T Consensus 291 ~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saa 370 (799)
T KOG4162|consen 291 EESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAA 370 (799)
T ss_pred HhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHh
Confidence 34455556666666554433321 2356777777788888888888888888888877777778888888888888
Q ss_pred CCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcC---
Q 002431 81 GDIDLAIRYYLVAIELR--PNFADAWSNLASAY-MRKGRLNEAAQCCRQALALN-----PLLVDAHSNLGNLMKAQG--- 149 (922)
Q Consensus 81 g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~la~~~~~~g--- 149 (922)
|.-..|+.+.+...... |+++..+...+..+ .+.+.+++++.+..+++... --.+..+..+|.+|..+-
T Consensus 371 g~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a 450 (799)
T KOG4162|consen 371 GSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQA 450 (799)
T ss_pred ccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcC
Confidence 88888888888887776 66666555555444 45677888888888887732 123456666666665432
Q ss_pred --------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCChH
Q 002431 150 --------LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL-KPTFPDAYLNLGNVYKALGMPQ 220 (922)
Q Consensus 150 --------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~ 220 (922)
...++++.++++++.+|.|+.+.+.++.-|..+++.+.|.....++++. ..+++..|..++.++...+++.
T Consensus 451 ~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 451 NLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 2457788888888888888888888888888888888888888888888 4456678888888888888888
Q ss_pred HHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCC---------CcHHHHHHHHHHHHHcCCHHHHH
Q 002431 221 EAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDP---------RFLEAYNNLGNALKDVGRVDEAI 290 (922)
Q Consensus 221 ~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p---------~~~~~~~~l~~~~~~~g~~~~A~ 290 (922)
+|+.+.+.+++..++ .........+-...++.++|+..+...+..-. +........+.......+..+|.
T Consensus 531 ~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 531 EALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccc
Confidence 888888888877665 33333444445556777777776666553211 01111222222222233333333
Q ss_pred HHHHHHHhh---------------------CCCC-----hHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhH
Q 002431 291 QCYNQCLSL---------------------QPSH-----PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 344 (922)
Q Consensus 291 ~~~~~al~~---------------------~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 344 (922)
+...++... .|+. ...|...+..+.+.++.++|..++.++..+.|.....|+..
T Consensus 611 s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 611 STSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLR 690 (799)
T ss_pred hhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHh
Confidence 333333221 1111 24677888999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHH--HHHHHHhhCCCcHHHHHHHHHHHHhcCCH
Q 002431 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ--DYIRAITIRPTMAEAHANLASAYKDSGHV 422 (922)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~ 422 (922)
|.++...|+.++|.+.|..++.++|+++.+...+|.++.+.|+..-|.. .+..+++.+|.+.++|+.+|.++.+.|+.
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999999999999888888 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHH
Q 002431 423 EAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 423 ~~A~~~~~~al~~~p~~~~~ 442 (922)
++|.++|..++++.+.+|.-
T Consensus 771 ~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 771 KQAAECFQAALQLEESNPVL 790 (799)
T ss_pred HHHHHHHHHHHhhccCCCcc
Confidence 99999999999999887743
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-21 Score=184.96 Aligned_cols=340 Identities=19% Similarity=0.233 Sum_probs=210.6
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 111 (922)
+.+-.+.+|..++..|++..|+..|..+++.+|++..+++..|..|...|+-..|+..+.+++++.|+...+....|.++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 191 (922)
Q Consensus 112 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 191 (922)
+++|++++|..-|+.+++.+|++....-....+.. .++ ...+......+...|+...|++.
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~----~~e---------------~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL----IQE---------------HWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh----HHH---------------HHHHHHHHHHHhcCCchhhHHHH
Confidence 55555555555555555554433211110000000 000 01112223344556777777777
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 002431 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 270 (922)
Q Consensus 192 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 270 (922)
...++++.|-+...+...+.+|...|+...|+.-++.+.++..+ .+.++.++.+++..|+.+.++...+++++++|+.-
T Consensus 178 i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 178 ITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 77777777777777777777777777777777777777776555 67777777777777777777777777777777755
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchh----hhhHHH
Q 002431 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP----FNNLAV 346 (922)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~la~ 346 (922)
..+-. |.+..+..+.++.. .-..+.++|.++++..++.++.+|..+.+ +..+..
T Consensus 258 ~Cf~~----YKklkKv~K~les~------------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 258 LCFPF----YKKLKKVVKSLESA------------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred hHHHH----HHHHHHHHHHHHHH------------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 33321 11112222222222 22334567778888888888888774433 445677
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 002431 347 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412 (922)
Q Consensus 347 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 412 (922)
|+...+++.+|+....++++.+|++.+++...+.+|..-..|++|+..|+++.+.++++..+...+
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 788888999999999999999999999999999999999999999999999999998887654443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-19 Score=187.41 Aligned_cols=470 Identities=16% Similarity=0.134 Sum_probs=352.1
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
+|..+...+..++|.+.++..+++++..|.+.+.+...|..+...|+-++|......++..++.+..+|..+|.++....
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (922)
+|++|+++|+.|+..+|+|...|..++....+.++++-....-.+.++..|..-..|...+..+.-.|++..|....+..
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HhhC---CCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002431 162 LRIQ---PTF-----AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233 (922)
Q Consensus 162 l~~~---p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 233 (922)
.+.. |+. .........+..+.|.+++|.+.+..--..--+........+.++.+.+++++|...|...+..+
T Consensus 170 ~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 170 EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 7654 332 23344556677788888888888776544433444566778899999999999999999999999
Q ss_pred CCh-hHHHhHHHHHHHcCChHHHH-HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhCCCChHHHHhH
Q 002431 234 PNA-IAFGNLASTYYERGQADMAI-LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEA-IQCYNQCLSLQPSHPQALTNL 310 (922)
Q Consensus 234 p~~-~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~l 310 (922)
|+. ..+..+-.++..-.+--+++ ..|...-+..|... .-..++.....-.++.+. -+++...++.+ -+.+...+
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e-~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg--~p~vf~dl 326 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE-CPRRLPLSVLNGEELKEIVDKYLRPLLSKG--VPSVFKDL 326 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-cchhccHHHhCcchhHHHHHHHHHHHhhcC--CCchhhhh
Confidence 994 44444444554333444444 55555544444432 333333333322233222 22333333331 12223333
Q ss_pred HHHHHHcCC---hhHHHHHHHHHHhcC------------CCCch--hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 002431 311 GNIYMEWNM---LPAAASYYKATLAVT------------TGLSA--PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD 373 (922)
Q Consensus 311 a~~~~~~~~---~~~A~~~~~~a~~~~------------~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 373 (922)
-.+|..-.. .++-...|...+.-. |..+. .++.++.-+...|+++.|..+++.++...|..++
T Consensus 327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliE 406 (700)
T KOG1156|consen 327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIE 406 (700)
T ss_pred HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHH
Confidence 333322111 111111122222111 22222 3456788889999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH-------HHHH-
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE-------ATCN- 445 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~- 445 (922)
.+...|.++...|++++|..++..+.+++-.|..+...-|....+.++.++|.+...+.-..+-+-.. .|+.
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhH
Confidence 99999999999999999999999999999887777778899999999999999998887665531110 1111
Q ss_pred -HHHhhcccCChhhHhHHHHHHHHHHHHHh
Q 002431 446 -LLHTLQCVCSWEDRDRMFSEVEGIIRRQV 474 (922)
Q Consensus 446 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 474 (922)
-+.++..+++|..|.+.|..+...+.+-.
T Consensus 487 E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~ 516 (700)
T KOG1156|consen 487 EDGEAYLRQNKLGLALKKFHEIEKHYKTWS 516 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 13346667778888888888877766644
|
|
| >TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-22 Score=218.75 Aligned_cols=341 Identities=14% Similarity=0.131 Sum_probs=224.7
Q ss_pred cceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCC--C----HHHHHHHHH
Q 002431 536 RLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM--S----SDMIAKLIN 609 (922)
Q Consensus 536 ~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~i~ 609 (922)
+.+|.++.+.+..+++..++..+.+.+++.++++++++.... +.+.+.+......++.+... . ...+.+.++
T Consensus 1 ~~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~l~ 78 (374)
T TIGR03088 1 RPLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEV--SAFRKRIQRPDVAFYALHKQPGKDVAVYPQLYRLLR 78 (374)
T ss_pred CceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCC--ChhHHHHHhcCceEEEeCCCCCCChHHHHHHHHHHH
Confidence 367999999999888999999999999998898877765332 23566666666555555421 1 356788899
Q ss_pred hCCCeEEEcCCCcCCCCch---hhhhc-CCCceEE-eccccCCCC-CCCcc--------cEEEecCccCCcCccCCCccc
Q 002431 610 EDKIQILINLNGYTKGARN---EIFAM-QPAPIQV-SYMGFPGTT-GASYI--------DYLVTDEFVSPLRYAHIYSEK 675 (922)
Q Consensus 610 ~~~~dil~~~~~~~~~~~~---~~~~~-~~apvq~-~~~g~~~t~-g~~~~--------d~~~~d~~~~~~~~~~~~~e~ 675 (922)
+.++||+ |+|+... .+++. ..-|+.+ +..|+...+ ....+ -...+|.+++.+.....+..+
T Consensus 79 ~~~~Div-----h~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs~~~~~~~~~ 153 (374)
T TIGR03088 79 QLRPDIV-----HTRNLAALEAQLPAALAGVPARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDLEDWLRG 153 (374)
T ss_pred HhCCCEE-----EEcchhHHHHHHHHHhcCCCeEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEeCHHHHHHHHH
Confidence 9999999 7764321 11121 1224322 222221100 00000 011345555444432111111
Q ss_pred eeecCCc--cccCCCccccccCCCC-CCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCC----CeEEE
Q 002431 676 LVHVPHC--YFVNDYKQKNMDVLDP-NCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVP----NSALW 746 (922)
Q Consensus 676 ~~~lp~~--~~~~~~~~~~~~~~~~-~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p----~~~l~ 746 (922)
...+|.. .+.+++.+...+.+.+ .....+.....+++.+++++++|+ .|+.+.+++++.+++++.| +.+|+
T Consensus 154 ~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~ 233 (374)
T TIGR03088 154 PVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLV 233 (374)
T ss_pred hcCCChhhEEEeccCccccccCCCccchhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEE
Confidence 1112211 1122221111111111 011122334456677888888876 4999999999999998876 68999
Q ss_pred EecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchh
Q 002431 747 LLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMAT 825 (922)
Q Consensus 747 ~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~ 825 (922)
++|+|+. .+.+++.+++.|+ .++|.|.|. ..+...+|+.+|+++.|+.++| |++++|||+||+|||+.+......
T Consensus 234 i~G~g~~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~~e 309 (374)
T TIGR03088 234 IVGDGPA-RGACEQMVRAAGL-AHLVWLPGE--RDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIATAVGGNPE 309 (374)
T ss_pred EecCCch-HHHHHHHHHHcCC-cceEEEcCC--cCCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEEcCCCCcHH
Confidence 9999876 7889999999999 589999995 5677888999999999998899 999999999999999654332222
Q ss_pred hhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 002431 826 RVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKM 896 (922)
Q Consensus 826 r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 896 (922)
-+. -|..+ ++. .|++++++.+.++.+|++.+..++++.++.. ...||++.+++++++.|+++
T Consensus 310 ~i~------~~~~g-~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~--~~~fs~~~~~~~~~~~y~~~ 373 (374)
T TIGR03088 310 LVQ------HGVTG-ALVPPGDAVALARALQPYVSDPAARRAHGAAGRARA--EQQFSINAMVAAYAGLYDQL 373 (374)
T ss_pred Hhc------CCCce-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHh
Confidence 111 13334 333 5899999999999999999999999988876 34699999999999999875
|
Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. |
| >PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-22 Score=218.71 Aligned_cols=173 Identities=13% Similarity=0.116 Sum_probs=145.8
Q ss_pred CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccC
Q 002431 712 DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 789 (922)
Q Consensus 712 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~ 789 (922)
+.+++++++|+ .|+.+.+++++..+.++.|+.+|+|+|+|+. ++.+++.++++|+ .++|.|+|.++..+...+|+.
T Consensus 221 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~-~~~l~~~~~~~~l-~~~V~~~G~~~~~el~~~l~~ 298 (406)
T PRK15427 221 TPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPW-ERRLRTLIEQYQL-EDVVEMPGFKPSHEVKAMLDD 298 (406)
T ss_pred CCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchh-HHHHHHHHHHcCC-CCeEEEeCCCCHHHHHHHHHh
Confidence 34667777776 4999999999999988889999999999987 8899999999999 599999999999999999999
Q ss_pred CcEEecCCC------CCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhc-C
Q 002431 790 ADLFLDTPL------CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLAL-D 859 (922)
Q Consensus 790 ~dv~l~~~~------~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~-d 859 (922)
+|+|+.|+. ++| |++++|||+||+|||+.......+-+. -|.++ +++ .|++++++++.++.+ |
T Consensus 299 aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~------~~~~G-~lv~~~d~~~la~ai~~l~~~d 371 (406)
T PRK15427 299 ADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVE------ADKSG-WLVPENDAQALAQRLAAFSQLD 371 (406)
T ss_pred CCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhc------CCCce-EEeCCCCHHHHHHHHHHHHhCC
Confidence 999999985 377 999999999999999654332222211 14444 343 589999999999999 9
Q ss_pred HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 860 RQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
++.+.+++++.|+.. ...|+++.+++++++.|++
T Consensus 372 ~~~~~~~~~~ar~~v--~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 372 TDELAPVVKRAREKV--ETDFNQQVINRELASLLQA 405 (406)
T ss_pred HHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHhh
Confidence 999999999999887 4469999999999999975
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-17 Score=165.63 Aligned_cols=443 Identities=16% Similarity=0.146 Sum_probs=369.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID 84 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 84 (922)
-|+--..++++..|.++|++++..+..+...|...+.+-++.+....|..++++++..-|.-...|+....+-...|+..
T Consensus 79 YaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 79 YAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIA 158 (677)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccH
Confidence 34455678889999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164 (922)
Q Consensus 85 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (922)
.|.++|++-++..|+ ..+|......-.+.++.+.|..+|++.+-.+| ....|...+..-.+.|+..-|...|+++++.
T Consensus 159 gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 159 GARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 999999999999998 77999999999999999999999999998886 5678899999999999999999999999987
Q ss_pred CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCChH---HHH-----HHHHHHHh
Q 002431 165 QPTF---AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQ---EAI-----MCYQRAVQ 231 (922)
Q Consensus 165 ~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~---~A~-----~~~~~~~~ 231 (922)
..++ ...+...+..-..+..++.|.-+|+-++..-|.+ ...+..+...-.+-|+.. +++ --|++.++
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 5544 3345566666777888999999999999988887 445555554445556543 333 23667777
Q ss_pred hCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHH-------HHHHHHHHH---HHcCCHHHHHHHHHHHHhhC
Q 002431 232 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE-------AYNNLGNAL---KDVGRVDEAIQCYNQCLSLQ 300 (922)
Q Consensus 232 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~l~~~~---~~~g~~~~A~~~~~~al~~~ 300 (922)
.+|. -.+|.....+....|+.+.-.+.|++++...|...+ .|..+-.++ ....+.+.+.++|+.++++-
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI 396 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI 396 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 8886 888999999999999999999999999977665332 122222222 45689999999999999998
Q ss_pred CCC----hHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q 002431 301 PSH----PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLV 376 (922)
Q Consensus 301 p~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 376 (922)
|.. +.+|...+....++.+...|.+.+-.++-..|.+. .+...+.+-.+.++++...++|++.++..|.+..+|.
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS 475 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence 864 56788888889999999999999999999998754 4566777788999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhc
Q 002431 377 NRGNTYKEIGRVTDAIQDYIRAITIRPTM--AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451 (922)
Q Consensus 377 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 451 (922)
..|..-..+|+.+.|..+|+-|++...-+ ...|......-...|.+++|..+|++.++..+... +|..++..-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 99999999999999999999999875332 23566777778889999999999999999988776 6666655444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-19 Score=189.35 Aligned_cols=405 Identities=19% Similarity=0.152 Sum_probs=339.8
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Q 002431 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN--PLLVDAHSNLG 142 (922)
Q Consensus 65 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la 142 (922)
+++..|-.+.......|+++.+.+.|++++...-...+.|+.++.+|...|.-..|+.+.++..... |+++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 5677888889999999999999999999998877788999999999999999999999999999888 77777766666
Q ss_pred HHH-HHcCCHHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCHHH
Q 002431 143 NLM-KAQGLVQEAYSCYLEALRIQ-----PTFAIAWSNLAGLFMES-----------GDLNRALQYYKEAVKLKPTFPDA 205 (922)
Q Consensus 143 ~~~-~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~ 205 (922)
.++ ...+..++++.+..+++... --.+..+..+|.+|..+ ....++++.++++++.+|.|+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 554 56788999999999999842 22355677777776543 23568899999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002431 206 YLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV 283 (922)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 283 (922)
.+.++.-|...++.+.|.....++++.++. ...|..++.++...+++.+|+...+.++...|++.........+-...
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 999999999999999999999999999665 889999999999999999999999999999888877777777777888
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHh---------HHHHHHHcCChhHHHHHHHHHHhc--------C-----------C
Q 002431 284 GRVDEAIQCYNQCLSLQPSHPQALTN---------LGNIYMEWNMLPAAASYYKATLAV--------T-----------T 335 (922)
Q Consensus 284 g~~~~A~~~~~~al~~~p~~~~~~~~---------la~~~~~~~~~~~A~~~~~~a~~~--------~-----------~ 335 (922)
++.++|+..+...+..-...+.+-.. .+.+.....+..+|.+..+++... . |
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~ 640 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLP 640 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccC
Confidence 99999999988887764322222111 122222233445555544443322 0 1
Q ss_pred CC-------chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHH
Q 002431 336 GL-------SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA 408 (922)
Q Consensus 336 ~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 408 (922)
.. ...|...+..+.+.++.++|..++.++-++.|..+..++..|.++...|+.++|.+.|..++.++|+++.+
T Consensus 641 ~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s 720 (799)
T KOG4162|consen 641 GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS 720 (799)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH
Confidence 11 13466788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHH
Q 002431 409 HANLASAYKDSGHVEAAIK--SYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 469 (922)
Q Consensus 409 ~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 469 (922)
...+|.++.+.|+..-|.. .+..+++++|.++++|+.+...+...|+.++|...|+.+.++
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9999999999998777777 999999999999999999999999999999999999888774
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-19 Score=193.21 Aligned_cols=462 Identities=15% Similarity=0.181 Sum_probs=370.7
Q ss_pred CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 13 GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLV 92 (922)
Q Consensus 13 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 92 (922)
++...|...|-++++.++.-..++..+|.+|....+...|.+.|+++.++++.+..+.-..+..|.+..+++.|....-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999766
Q ss_pred HHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 002431 93 AIELRPN--FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI 170 (922)
Q Consensus 93 al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 170 (922)
+-+..|. ....|..+|-.|.+.++...|+..|+.+++.+|++...|..+|.+|...|++..|++.|.++..++|.+..
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 6666654 23456778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---------C
Q 002431 171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-------PDAYLNLGNVYKALGMPQEAIMCYQRAVQTR---------P 234 (922)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------p 234 (922)
..+..+.+.+..|+|.+|+..+...+...... .+.+...+..+...|-..+|...+++.++.. .
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999887754333 3455555666666676777777777666521 1
Q ss_pred ChhHHHhHHHHHHH---cC--------------------Ch---H---HHHHHHHHHHhcCCCcHHHHHHHHHHHHH---
Q 002431 235 NAIAFGNLASTYYE---RG--------------------QA---D---MAILYYKQAIGCDPRFLEAYNNLGNALKD--- 282 (922)
Q Consensus 235 ~~~~~~~l~~~~~~---~g--------------------~~---~---~A~~~~~~~l~~~p~~~~~~~~l~~~~~~--- 282 (922)
+...|..++..+.- .. .. + -+.+++-..++.-.. ...|+++|..|..
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~-~~~WyNLGinylr~f~ 790 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH-MYPWYNLGINYLRYFL 790 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc-cchHHHHhHHHHHHHH
Confidence 12223323222211 11 00 1 122222222221111 3468888877765
Q ss_pred -----cCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHH
Q 002431 283 -----VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 357 (922)
Q Consensus 283 -----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 357 (922)
+.+...|+.++.+++++..++...|+.||.+ ...|++.-|..+|-+.....|.+...|.++|.++.+..+++.|
T Consensus 791 ~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 791 LLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred HcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHh
Confidence 2344589999999999999999999999988 6679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHhcCCHHHHHH-----
Q 002431 358 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT-----MAEAHANLASAYKDSGHVEAAIK----- 427 (922)
Q Consensus 358 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~----- 427 (922)
...|.++..++|.+...|...+.+....|+.-++...|....++... ....|..-......+|++++-+.
T Consensus 870 ~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 870 EPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred hHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 99999999999999999999999999999999999999985554322 12344444555666777666554
Q ss_pred -----HHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHHHHHHhcc
Q 002431 428 -----SYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNM 476 (922)
Q Consensus 428 -----~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 476 (922)
..++.+...|++..++...+......+.+.++.....++..+++.-...
T Consensus 950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~ 1003 (1238)
T KOG1127|consen 950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDE 1003 (1238)
T ss_pred hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667789999999888888888888888888888888888776544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-18 Score=172.60 Aligned_cols=405 Identities=15% Similarity=0.086 Sum_probs=315.8
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
...+.++-..++-+.|+..+.++.... ..+.....++..+-.-++-.++.-.+...+...|--......+...- -+-
T Consensus 101 r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~--v~g 177 (564)
T KOG1174|consen 101 RRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELG--VNG 177 (564)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHh--hcc
Confidence 356788888899999998887765432 23455555666665555555666666666666553222222111111 111
Q ss_pred HHHHHHHHHHHHhcCCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 83 IDLAIRYYLVAIELRPNFADAW---SNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYL 159 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (922)
++.+- .-..++...|..+..| ..++.++.-...+.-+..++-.-...-|++...+..+|.++...|++++|+..|+
T Consensus 178 ~e~~S-~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 178 NEINS-LVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred hhhhh-hhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 11111 1112233445544433 2334444444445555556666666778999999999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhH
Q 002431 160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIA 238 (922)
Q Consensus 160 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~ 238 (922)
++.-.+|.+....-..|.++...|++++-..+....+........-|+--+..++..+++..|+.+-+++++.+|+ ..+
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~a 336 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEA 336 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchH
Confidence 9999999999999999999999999999888888888877666777888888888899999999999999999888 888
Q ss_pred HHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHH-HHHH-H
Q 002431 239 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG-NIYM-E 316 (922)
Q Consensus 239 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~-~ 316 (922)
+...|..+...++.++|+-.|+.+..+.|...+.|..+..+|...|++.+|...-+.+++..|.+..++..+| .++. .
T Consensus 337 lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 337 LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPD 416 (564)
T ss_pred HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888886 4433 3
Q ss_pred cCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002431 317 WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYI 396 (922)
Q Consensus 317 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 396 (922)
-.--++|.+++++.+.+.|....+-..++.++...|.+++++.++++.+...|+ ...+..+|.++...+.+.+|++.|.
T Consensus 417 p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred chhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344678999999999999999999999999999999999999999999988765 4678899999999999999999999
Q ss_pred HHHhhCCCcHHHHHHH
Q 002431 397 RAITIRPTMAEAHANL 412 (922)
Q Consensus 397 ~al~~~p~~~~~~~~l 412 (922)
.|+.++|++..+...+
T Consensus 496 ~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 496 KALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHhcCccchHHHHHH
Confidence 9999999987655444
|
|
| >cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-21 Score=212.54 Aligned_cols=329 Identities=11% Similarity=0.083 Sum_probs=215.3
Q ss_pred eeeeecCCCCCC--hhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC--C-----------CCHH
Q 002431 538 RVGYVSSDFGNH--PLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS--A-----------MSSD 602 (922)
Q Consensus 538 rig~~s~~~~~h--~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~ 602 (922)
||.+++..+..+ ++.+++..+.+.+.+.++||++++....... ..........++.++ . ....
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~--~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~ 78 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRV--GIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFP 78 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCC--CcccccCceeEEEecceeccCCccccchhhhHH
Confidence 466777665443 3457888999999888999999986422111 001111111111111 0 1124
Q ss_pred HHHHHHHhCCCeEEEcCCCcCCCCchh-----hhhc--CCCceEEeccccCCCCCC-----C-ccc--EEEecCccCCcC
Q 002431 603 MIAKLINEDKIQILINLNGYTKGARNE-----IFAM--QPAPIQVSYMGFPGTTGA-----S-YID--YLVTDEFVSPLR 667 (922)
Q Consensus 603 ~~~~~i~~~~~dil~~~~~~~~~~~~~-----~~~~--~~apvq~~~~g~~~t~g~-----~-~~d--~~~~d~~~~~~~ 667 (922)
.+.+.+...++||+ |+|+.... ++.. ...|+..+..+....... . .+. +..+|.+++++.
T Consensus 79 ~l~~~~~~~~~DiI-----h~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~ 153 (398)
T cd03796 79 LLRNILIRERITIV-----HGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSH 153 (398)
T ss_pred HHHHHHHhcCCCEE-----EECCCCchHHHHHHHHhhhcCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEecH
Confidence 56777888899999 77654321 1222 335777765442111100 0 011 123455554443
Q ss_pred ccC--------CCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHH
Q 002431 668 YAH--------IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNIL 737 (922)
Q Consensus 668 ~~~--------~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il 737 (922)
... ...+++..+|++. +... +.+.... .+++.++++.++|+ .|+.+.+++++..+.
T Consensus 154 ~~~~~~~~~~~~~~~k~~vi~ngv------d~~~--f~~~~~~------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~ 219 (398)
T cd03796 154 TSKENTVLRASLDPERVSVIPNAV------DSSD--FTPDPSK------RDNDKITIVVISRLVYRKGIDLLVGIIPEIC 219 (398)
T ss_pred hHhhHHHHHhCCChhhEEEEcCcc------CHHH--cCCCccc------CCCCceEEEEEeccchhcCHHHHHHHHHHHH
Confidence 311 1123344444332 1111 1111111 23466788888876 599999999999998
Q ss_pred hhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCee
Q 002431 738 RRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMI 816 (922)
Q Consensus 738 ~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv 816 (922)
+..|+.+|+++|+|+. .+.+++.+.+.|+ .++|.|.|.++.++...+|+.+|++|.|+.++| |++++|||+||+|||
T Consensus 220 ~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l-~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI 297 (398)
T cd03796 220 KKHPNVRFIIGGDGPK-RILLEEMREKYNL-QDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVV 297 (398)
T ss_pred hhCCCEEEEEEeCCch-HHHHHHHHHHhCC-CCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEE
Confidence 8999999999999876 7889999999999 489999999999999999999999999998888 999999999999999
Q ss_pred eecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 002431 817 TLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKM 896 (922)
Q Consensus 817 ~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 896 (922)
+.+......-+. . |-.- ++..|.+++++++.++..+......++++.++.. ...||++.+++++.+.|+++
T Consensus 298 ~s~~gg~~e~i~-----~-~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~--~~~fs~~~~~~~~~~~y~~l 368 (398)
T cd03796 298 STRVGGIPEVLP-----P-DMIL-LAEPDVESIVRKLEEAISILRTGKHDPWSFHNRV--KKMYSWEDVAKRTEKVYDRI 368 (398)
T ss_pred ECCCCCchhhee-----C-Ccee-ecCCCHHHHHHHHHHHHhChhhhhhHHHHHHHHH--HhhCCHHHHHHHHHHHHHHH
Confidence 655433333222 1 1111 4456889999999999988776666677777665 44699999999999999987
Q ss_pred HH
Q 002431 897 WS 898 (922)
Q Consensus 897 ~~ 898 (922)
..
T Consensus 369 ~~ 370 (398)
T cd03796 369 LQ 370 (398)
T ss_pred hc
Confidence 64
|
Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder. |
| >cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-21 Score=208.50 Aligned_cols=338 Identities=14% Similarity=0.145 Sum_probs=218.6
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHH--HHHHh-ccCceEECCCCCHHHH----HHH---
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWR--QRTQS-EAEHFVDVSAMSSDMI----AKL--- 607 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~----~~~--- 607 (922)
||.++++.+..+++.+++..+.+.+++.++|+.++...+.++. +. +.+.. .......++....... ...
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEF-FNVTKKFHNALQGADIELSEEEKEIYLEWNEENAER 79 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhH-HHHHHHhhHhhcCCCCCCCHHHHHHHHHHHHHHhcc
Confidence 6899999998999999999999999999999999887654322 11 22222 1111112221111111 112
Q ss_pred -HHhCCCeEEEcCCCcCCCCc---hhhhhcC-CCceEEeccccCCCCCCCcc-cE-----EEecCccCCc-Cc-cCCCcc
Q 002431 608 -INEDKIQILINLNGYTKGAR---NEIFAMQ-PAPIQVSYMGFPGTTGASYI-DY-----LVTDEFVSPL-RY-AHIYSE 674 (922)
Q Consensus 608 -i~~~~~dil~~~~~~~~~~~---~~~~~~~-~apvq~~~~g~~~t~g~~~~-d~-----~~~d~~~~~~-~~-~~~~~e 674 (922)
+...++||+ |+|... +..+..+ ..|+.+++.+...+. ...+ .+ .-.|.++.++ +. ...+..
T Consensus 80 ~~~~~~~Dvv-----~~h~~~~~~~~~~~~~~~~~~i~~~H~~~~~~-~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~ 153 (372)
T cd03792 80 PLLDLDADVV-----VIHDPQPLALPLFKKKRGRPWIWRCHIDLSSP-NRRVWDFLQPYIEDYDAAVFHLPEYVPPQVPP 153 (372)
T ss_pred ccccCCCCEE-----EECCCCchhHHHhhhcCCCeEEEEeeeecCCC-cHHHHHHHHHHHHhCCEEeecHHHhcCCCCCC
Confidence 225689999 444332 1222222 467665543322111 0000 00 0123333332 11 222222
Q ss_pred ceeecCCccccCCCccccccCCCC-CCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCC
Q 002431 675 KLVHVPHCYFVNDYKQKNMDVLDP-NCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFP 751 (922)
Q Consensus 675 ~~~~lp~~~~~~~~~~~~~~~~~~-~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~ 751 (922)
+.+.+|+..-..... .....+ .....|.++|++++.++++.++|+ .|+++.+++++.++.+..|+.+|+++|.|
T Consensus 154 ~~~vipngvd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g 230 (372)
T cd03792 154 RKVIIPPSIDPLSGK---NRELSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSG 230 (372)
T ss_pred ceEEeCCCCCCCccc---cCCCCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCC
Confidence 222444332111000 000000 111357789999888899988886 59999999999999888899999999987
Q ss_pred hhh----HHHHHHHHHHcCCCCCceEEcCCC--CcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcch
Q 002431 752 AAG----EMRLRAYAVAQGVQPDQIIFTDVA--MKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMA 824 (922)
Q Consensus 752 ~~~----~~~l~~~~~~~g~~~~rv~f~~~~--~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~ 824 (922)
+.. .+.+++..+..++ .++|.|.|.. +..+...+|+.+|+|+.|+.++| |++++|||++|+|||+.+.....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~ 309 (372)
T cd03792 231 ATDDPEGWIVYEEVLEYAEG-DPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGGIP 309 (372)
T ss_pred CCCCchhHHHHHHHHHHhCC-CCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCCch
Confidence 531 2234444556788 4889999975 67888889999999999999999 99999999999999976544333
Q ss_pred hhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 825 TRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 825 ~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
.-+. -|..+ +++++.++++..+.++..|++.++.++++.++.. ...|+++.+++++.+.|+.
T Consensus 310 ~~i~------~~~~g-~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~--~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 310 LQIE------DGETG-FLVDTVEEAAVRILYLLRDPELRRKMGANAREHV--RENFLITRHLKDYLYLISK 371 (372)
T ss_pred hhcc------cCCce-EEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHH--HHHcCHHHHHHHHHHHHHh
Confidence 2221 15556 6777888999999999999999999999998876 3469999999999999975
|
The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-21 Score=202.86 Aligned_cols=260 Identities=22% Similarity=0.313 Sum_probs=89.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-h-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 002431 140 NLGNLMKAQGLVQEAYSCYLEALR-I-QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217 (922)
Q Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 217 (922)
.++.++...|++++|++.+.+... . .|++...|..++.+....+++++|+..|++++..++.++..+..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 456666666666666666654433 2 356666666666666667777777777777766666666666666666 5667
Q ss_pred ChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 218 MPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCD--PRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295 (922)
Q Consensus 218 ~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (922)
++++|.+++++..+..++...+...+.++...++++++...++++.... +.+...|..+|.++.+.|+.++|+..+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777776666655555555566666666677777776666655433 45566677777777777777777777777
Q ss_pred HHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 002431 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 375 (922)
Q Consensus 296 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 375 (922)
+++.+|+++.+...++.++...|+.+++...++......|.++..+..+|.++...|++++|+.+|+++++.+|+++..+
T Consensus 172 al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 172 ALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp HHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 77777777777777777777667666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Q 002431 376 VNRGNTYKEIGRVTDAIQDYIRAIT 400 (922)
Q Consensus 376 ~~l~~~~~~~g~~~~A~~~~~~al~ 400 (922)
..+|.++...|+.++|..++.++++
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 6666666666666666666665543
|
|
| >PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=212.92 Aligned_cols=340 Identities=11% Similarity=0.048 Sum_probs=216.5
Q ss_pred CcccceeeeecC-CC--CCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccC-----ceE---ECCCCCH
Q 002431 533 GLRRLRVGYVSS-DF--GNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAE-----HFV---DVSAMSS 601 (922)
Q Consensus 533 ~~~~~rig~~s~-~~--~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~ 601 (922)
..+++||.++.. .. ..+++...+..+.+.+.+.++||++++..+....... .++-... .+. ...-...
T Consensus 55 ~~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~~ 133 (465)
T PLN02871 55 RSRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEFH-GAKVIGSWSFPCPFYQKVPLSLALS 133 (465)
T ss_pred cCCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCcccc-CceeeccCCcCCccCCCceeeccCC
Confidence 367899998853 22 2345567788899999888999999986543211110 0110000 000 0000011
Q ss_pred HHHHHHHHhCCCeEEEcCCCcCCCCch----hh-h-hcCCCceEEeccccCCCCC----CCc----c------cEEEecC
Q 002431 602 DMIAKLINEDKIQILINLNGYTKGARN----EI-F-AMQPAPIQVSYMGFPGTTG----ASY----I------DYLVTDE 661 (922)
Q Consensus 602 ~~~~~~i~~~~~dil~~~~~~~~~~~~----~~-~-~~~~apvq~~~~g~~~t~g----~~~----~------d~~~~d~ 661 (922)
..+.+.|++.++||+ |++.... .+ + .....|+.+++.++..... ... + -+..+|.
T Consensus 134 ~~l~~~i~~~kpDiI-----h~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ 208 (465)
T PLN02871 134 PRIISEVARFKPDLI-----HASSPGIMVFGALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADL 208 (465)
T ss_pred HHHHHHHHhCCCCEE-----EECCCchhHHHHHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCE
Confidence 367889999999999 4433211 11 1 1234688887665531110 000 0 0123466
Q ss_pred ccCCcCccCCC--------ccceeecCCccccCCCccccccCCCCCCCCCcCCCC-CCCCcEEEEecCCC--CCCCHHHH
Q 002431 662 FVSPLRYAHIY--------SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYG-LPEDKFIFACFNQL--YKMDPEIF 730 (922)
Q Consensus 662 ~~~~~~~~~~~--------~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~-l~~~~~~~~~~~~~--~K~~~~~~ 730 (922)
+++++...... .+++..+|+..-. ..+.+.......|..++ .+++.++++.++|+ .|+.+.++
T Consensus 209 ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~------~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~li 282 (465)
T PLN02871 209 TLVTSPALGKELEAAGVTAANRIRVWNKGVDS------ESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGAEKNLDFLK 282 (465)
T ss_pred EEECCHHHHHHHHHcCCCCcCeEEEeCCccCc------cccCCccccHHHHHHhcCCCCCCeEEEEeCCCchhhhHHHHH
Confidence 66665432111 2333334432211 11111111112343442 23456777788876 48877777
Q ss_pred HHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHH
Q 002431 731 NTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDIL 809 (922)
Q Consensus 731 ~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal 809 (922)
++. ++.|+.+|+|+|+|+. .+.+++.+.. .+|+|+|+++.++...+|+.+||||.|+.++| |++++|||
T Consensus 283 ~a~----~~~~~~~l~ivG~G~~-~~~l~~~~~~-----~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAm 352 (465)
T PLN02871 283 RVM----ERLPGARLAFVGDGPY-REELEKMFAG-----TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAM 352 (465)
T ss_pred HHH----HhCCCcEEEEEeCChH-HHHHHHHhcc-----CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHH
Confidence 654 4568999999999876 6777776652 47999999999999999999999999998888 99999999
Q ss_pred HcCCCeeeecCCcchhhhHHHHHHh--cCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHH
Q 002431 810 WAGLPMITLPLEKMATRVAGSLCLA--TGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARW 885 (922)
Q Consensus 810 ~~g~Pvv~~~~~~~~~r~~~~~~~~--~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 (922)
+||+|||+........ ++.. .|-.+ ++. .|++++++.+.++.+|++.+.+++++.++... .||++.+
T Consensus 353 A~G~PVI~s~~gg~~e-----iv~~~~~~~~G-~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~---~fsw~~~ 423 (465)
T PLN02871 353 ASGVPVVAARAGGIPD-----IIPPDQEGKTG-FLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVE---KWDWRAA 423 (465)
T ss_pred HcCCCEEEcCCCCcHh-----hhhcCCCCCce-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---hCCHHHH
Confidence 9999999654332222 2221 14444 443 58999999999999999999999999998763 4999999
Q ss_pred HHHHHH-HHHHHHHHHhcC
Q 002431 886 VKNLER-SYFKMWSLHCSG 903 (922)
Q Consensus 886 ~~~~e~-~y~~~~~~~~~~ 903 (922)
++++++ .|++++.+|.+.
T Consensus 424 a~~l~~~~Y~~~~~~~~~~ 442 (465)
T PLN02871 424 TRKLRNEQYSAAIWFWRKK 442 (465)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 999998 799998888753
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-16 Score=159.70 Aligned_cols=444 Identities=14% Similarity=0.132 Sum_probs=363.5
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002431 20 EHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99 (922)
Q Consensus 20 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 99 (922)
+.|+..+..+.-+...|...|.--..++++..|..+|++++..+..+...|...+.+-.+..+...|..++++++.+-|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 34555666666677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 002431 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF 179 (922)
Q Consensus 100 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 179 (922)
-...|+....+--..|+..-|.++|++-++..|+ ..+|......-.+.+..+.|..+|++.+-..|+ ...|...+..-
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE 217 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFE 217 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHH
Confidence 9999999999999999999999999999998884 678889999999999999999999999988865 67889999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---hhHHHhHHHHHHHcCCh-
Q 002431 180 MESGDLNRALQYYKEAVKLKPTFPD---AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYERGQA- 252 (922)
Q Consensus 180 ~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~- 252 (922)
.+.|+...|...|+.+++.-.++.. .+...+..-..++.++.|.-+|+-++..-|. ...+......--+-|+.
T Consensus 218 ~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~ 297 (677)
T KOG1915|consen 218 EKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKE 297 (677)
T ss_pred HhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999986655433 5566677777888999999999999998887 23333343333444543
Q ss_pred --HHHH-----HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH-------HHHhHHHH---HH
Q 002431 253 --DMAI-----LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ-------ALTNLGNI---YM 315 (922)
Q Consensus 253 --~~A~-----~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~---~~ 315 (922)
++++ -.|++.++.+|.+.++|+.+..+....|+.+.-.+.|++++...|...+ +|..+-.+ -.
T Consensus 298 gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl 377 (677)
T KOG1915|consen 298 GIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL 377 (677)
T ss_pred hhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 3467777889999999999999999999999999999999998776433 22222222 23
Q ss_pred HcCChhHHHHHHHHHHhcCCCC----chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHH
Q 002431 316 EWNMLPAAASYYKATLAVTTGL----SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA 391 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 391 (922)
...+.+.+.++|+.++++-|.. +..|...+....++.+...|.+.+-.++-..|.+ ..+-....+-.++++++..
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRC 456 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHH
Confidence 5688999999999999998874 5567888888899999999999999999999875 4455566777889999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHH-HHHHHHHhhcccCChhhHhHHHHHH
Q 002431 392 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD-FPE-ATCNLLHTLQCVCSWEDRDRMFSEV 466 (922)
Q Consensus 392 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 466 (922)
.++|++-++..|.+..+|...|..-..+|+.+.|..+|+-+++...- -|. .|-..+..-...|.++.+..+++.+
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986432 222 3334444444444444444444443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-18 Score=190.32 Aligned_cols=395 Identities=18% Similarity=0.143 Sum_probs=242.1
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 47 HDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126 (922)
Q Consensus 47 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 126 (922)
++...|...|-+++++++..+.++..+|..|...-+...|.++|+++.++++.+..++...+..|....+++.|....-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45677778888888888888888888888888777888888888888888888888888888888888888888777555
Q ss_pred HHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 127 ALALNPLL--VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 204 (922)
Q Consensus 127 ~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 204 (922)
.-+..|.. ...|..+|-.|.+.++...|+..|+.+++.+|.+...|..+|.+|...|.+..|++.|.++..++|.+..
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 54444432 2245557777888888888888888888888888888888888888888888888888888888888877
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--------hhHHHhHHHHHHHcCChHHHHHHHHHHHhc-------C-CC
Q 002431 205 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--------AIAFGNLASTYYERGQADMAILYYKQAIGC-------D-PR 268 (922)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-------~-p~ 268 (922)
..+..+.+.+..|++.+|+..+...+..... .+.+...+..+...|-..+|..++++.++. . -+
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 8888888888888888888888777654322 455555555555666666666666665532 1 12
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHH--HHHcCCh------hHHHHHHHHHHhcCCCCchh
Q 002431 269 FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI--YMEWNML------PAAASYYKATLAVTTGLSAP 340 (922)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~~~~------~~A~~~~~~a~~~~~~~~~~ 340 (922)
+...|..++.++.-. ....|+-+...+..... ....+.. --+.+++-..++... .+..
T Consensus 712 ~~~~Wi~asdac~~f-------------~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~ 777 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIF-------------SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYP 777 (1238)
T ss_pred hHHHHHHHhHHHHHH-------------HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccch
Confidence 222333333322111 00011111100000000 0000000 011122222222111 1444
Q ss_pred hhhHHHHHHH--------cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 002431 341 FNNLAVIYKQ--------QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412 (922)
Q Consensus 341 ~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 412 (922)
|+++|..|.. +.+...|+.++++++++..++...|+.+|.+ ...|++.-|..+|-+.+...|....+|.++
T Consensus 778 WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nl 856 (1238)
T KOG1127|consen 778 WYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNL 856 (1238)
T ss_pred HHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheecc
Confidence 5555555544 1233456666666666666666666666655 444566666666666666666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCCh
Q 002431 413 ASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSW 456 (922)
Q Consensus 413 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 456 (922)
|.++.+..+++.|...|.++..++|.+...|..........|+.
T Consensus 857 gvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~i 900 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRI 900 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHH
Confidence 66666666666666666666666666666655555544444443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.3e-19 Score=168.82 Aligned_cols=410 Identities=21% Similarity=0.196 Sum_probs=293.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHHHH-HhcC--CCc---
Q 002431 35 NLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG--------DIDLAIRYYLVA-IELR--PNF--- 100 (922)
Q Consensus 35 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~a-l~~~--p~~--- 100 (922)
.-+.++..+++...|+...++...+++..|++..+|.....++.+.- +-.+|...++.- +... |..
T Consensus 6 ~~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k 85 (478)
T KOG1129|consen 6 LDYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIK 85 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCccc
Confidence 34677888999999999999999999999999889988888776532 222444444321 1111 110
Q ss_pred ----------HHH-----------HHHHHHH-HHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHH
Q 002431 101 ----------ADA-----------WSNLASA-YMRKGRLNEAAQCCRQALALNP--LLVDAHSNLGNLMKAQGLVQEAYS 156 (922)
Q Consensus 101 ----------~~~-----------~~~la~~-~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~ 156 (922)
..+ -...... -.+-|..+.|+..-..+....+ ........+|..-...+.-.+
T Consensus 86 ~p~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG~--- 162 (478)
T KOG1129|consen 86 TPFTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDGK--- 162 (478)
T ss_pred CCCCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCcc---
Confidence 000 0000000 1122333333332222111110 000111222222222111110
Q ss_pred HHHHHHhhCCC----cHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC-------CHHHHHHHHHHHHHcCChHH
Q 002431 157 CYLEALRIQPT----FAIA-WSNLAGLFMESGDLNRALQYYKEAVKLK---PT-------FPDAYLNLGNVYKALGMPQE 221 (922)
Q Consensus 157 ~~~~al~~~p~----~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~-------~~~~~~~l~~~~~~~g~~~~ 221 (922)
|-.+-+++|. .+.. -...-.+++..++...|-......++.. |. +......+|.+|.+.|.+.+
T Consensus 163 -f~nlsRLN~tkYa~~p~l~kaLFey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~ 241 (478)
T KOG1129|consen 163 -FYNLSRLNPTKYAERPTLVKALFEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRR 241 (478)
T ss_pred -eeehhhcCchhhccChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhh
Confidence 1111122221 1111 1112234556667777765555444331 11 22244678999999999999
Q ss_pred HHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002431 222 AIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301 (922)
Q Consensus 222 A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 301 (922)
|.+.++..++..|..+++..++.+|....++..|+..+.+.++..|.+...+...+.++..++++++|.++|+.+++.+|
T Consensus 242 AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~ 321 (478)
T KOG1129|consen 242 AEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHP 321 (478)
T ss_pred hHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCC---CCHHHHHHH
Q 002431 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP---LAADGLVNR 378 (922)
Q Consensus 302 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l 378 (922)
.+.++.-.++.-|+-.++.+-|+.+|++.++..-.+++.+.++|.+..-.++++-++..|++++.... ...++|+++
T Consensus 322 ~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNl 401 (478)
T KOG1129|consen 322 INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNL 401 (478)
T ss_pred ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcc
Confidence 99999988999999999999999999999999999999999999999999999999999999987632 346799999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002431 379 GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLH 448 (922)
Q Consensus 379 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 448 (922)
|.+....|++.-|..+|+-++..++++.+++++|+.+-.+.|+.++|..+++.+....|+-.+..+|+..
T Consensus 402 g~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 402 GFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQF 471 (478)
T ss_pred ceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeE
Confidence 9999999999999999999999999999999999999999999999999999999999987777766543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=7e-18 Score=186.05 Aligned_cols=300 Identities=13% Similarity=0.028 Sum_probs=184.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHcC
Q 002431 105 SNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA-IAWSNLAGLFMESG 183 (922)
Q Consensus 105 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g 183 (922)
...|......|+++.|.+.+.++.+..|+....+...+.++..+|+++.|...+.++.+..|++. .+....+.++...|
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~ 167 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN 167 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC
Confidence 34455555666777777766666666666666666666666666777777777766666666654 34444566666666
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHH
Q 002431 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQA 262 (922)
Q Consensus 184 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 262 (922)
++++|...++++.+..|+++.++..++.++...|++++|.+.+.+..+.... ...+..+
T Consensus 168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l-------------------- 227 (409)
T TIGR00540 168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADL-------------------- 227 (409)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH--------------------
Confidence 6666666666666666666666666666666666666666666666654221 1111000
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 002431 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP----SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS 338 (922)
Q Consensus 263 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 338 (922)
.......+...+..+++.+.+.++.+..| +++..+..++..+...|++++|.+.++++++..|++.
T Consensus 228 ----------~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 228 ----------EQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred ----------HHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 00001111111222223333444444333 3444555555555555555555555555555555444
Q ss_pred hhh--hhHHHHHHHcCCHHHHHHHHHHHHccCCCCH--HHHHHHHHHHHHhCCHHHHHHHHH--HHHhhCCCcHHHHHHH
Q 002431 339 APF--NNLAVIYKQQGNYADAISCYNEVLRIDPLAA--DGLVNRGNTYKEIGRVTDAIQDYI--RAITIRPTMAEAHANL 412 (922)
Q Consensus 339 ~~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l 412 (922)
... ..........++.+++++.++++++.+|+++ ..+..+|+++.+.|++++|.+.|+ .+++..|++.. +..+
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~L 376 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMA 376 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHH
Confidence 321 1112222334677888888999999999998 888889999999999999999999 57777887654 5589
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 002431 413 ASAYKDSGHVEAAIKSYKQALLL 435 (922)
Q Consensus 413 a~~~~~~g~~~~A~~~~~~al~~ 435 (922)
|.++.+.|+.++|.++|++++..
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999988654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PLN02949 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=200.64 Aligned_cols=348 Identities=12% Similarity=0.108 Sum_probs=217.1
Q ss_pred CcccceeeeecCCCCCC-hhHhhhhHHhhcCCCC--CeEEEEEecCCCCC-hHHHHHHHhccC-------ceEEC-----
Q 002431 533 GLRRLRVGYVSSDFGNH-PLSHLMGSVFGMHNKE--NVEVFCYALSPNDG-TEWRQRTQSEAE-------HFVDV----- 596 (922)
Q Consensus 533 ~~~~~rig~~s~~~~~h-~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~----- 596 (922)
..++++|||+=++.+.+ +..+++......+.+. +.+|++|+..-+.. +..-...+..+. .|+.+
T Consensus 30 ~~~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~~~~~ 109 (463)
T PLN02949 30 RSRKRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLRKRKW 109 (463)
T ss_pred cCCCcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEeccccc
Confidence 35678999999999887 5556665555554433 35888888542211 221111221111 12222
Q ss_pred ---CCCC-----H------HHHHHHHHhCCCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCCC------------
Q 002431 597 ---SAMS-----S------DMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG------------ 650 (922)
Q Consensus 597 ---~~~~-----~------~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g------------ 650 (922)
..+. . .-..+.+....+||.||..|+..+ .+++....+|| +.|..||.-+.
T Consensus 110 ~~~~~~~~~t~~~~~~~~~~l~~~~~~~~~p~v~vDt~~~~~~--~pl~~~~~~~v-~~yvH~p~~~~dm~~~v~~~~~~ 186 (463)
T PLN02949 110 IEEETYPRFTMIGQSLGSVYLAWEALCKFTPLYFFDTSGYAFT--YPLARLFGCKV-VCYTHYPTISSDMISRVRDRSSM 186 (463)
T ss_pred cccccCCceehHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccH--HHHHHhcCCcE-EEEEeCCcchHHHHHHHhhcccc
Confidence 1111 0 112333444678999999986532 35544333555 45556663221
Q ss_pred -----------C----Cc-----cc--E----EEecCccCCcCccCCCccceeecCC-ccccCCCccccccCCCCCCCCC
Q 002431 651 -----------A----SY-----ID--Y----LVTDEFVSPLRYAHIYSEKLVHVPH-CYFVNDYKQKNMDVLDPNCQPK 703 (922)
Q Consensus 651 -----------~----~~-----~d--~----~~~d~~~~~~~~~~~~~e~~~~lp~-~~~~~~~~~~~~~~~~~~~~~~ 703 (922)
. .. ++ | ..+|.+++++........+.+..|. ..+.+++...... .. .+.
T Consensus 187 ~~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~~~--~~--~~~ 262 (463)
T PLN02949 187 YNNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTSGL--QA--LPL 262 (463)
T ss_pred cCccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHHHc--cc--CCc
Confidence 0 00 01 0 2356667666543322233333332 1222222111000 00 000
Q ss_pred cCCCCCCCCcEEEEecCC--CCCCCHHHHHHHHHHHhh----CCCeEEEEecCChhh-----HHHHHHHHHHcCCCCCce
Q 002431 704 RSDYGLPEDKFIFACFNQ--LYKMDPEIFNTWCNILRR----VPNSALWLLRFPAAG-----EMRLRAYAVAQGVQPDQI 772 (922)
Q Consensus 704 r~~~~l~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~----~p~~~l~~~~~~~~~-----~~~l~~~~~~~g~~~~rv 772 (922)
. -+++..+|.+++| +.|+++.++++|+++.++ .|+.+|+|+|+++.. .+.|++.++++|+ .++|
T Consensus 263 ~----~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L-~~~V 337 (463)
T PLN02949 263 E----RSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGL-DGDV 337 (463)
T ss_pred c----ccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCC-CCcE
Confidence 0 0122244556665 469999999999998764 478999999986421 2578999999999 5999
Q ss_pred EEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCc-chhhhHHHHHHhcCCCCccccCCHHHHH
Q 002431 773 IFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEK-MATRVAGSLCLATGLGEEMIVNSMKEYE 850 (922)
Q Consensus 773 ~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~-~~~r~~~~~~~~~g~~~~~i~~~~~~~~ 850 (922)
.|+|..+.++...+|+.+|++|.|+.+|| |++++|||++|+|||+.+... ...-+... .-|..+ +.+.|+++++
T Consensus 338 ~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~---~~g~tG-~l~~~~~~la 413 (463)
T PLN02949 338 EFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE---DGQQTG-FLATTVEEYA 413 (463)
T ss_pred EEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC---CCCccc-ccCCCHHHHH
Confidence 99999999999999999999999998899 999999999999999765221 11111000 004455 6778999999
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 002431 851 ERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899 (922)
Q Consensus 851 ~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 899 (922)
+.+.++.+ +++.+.+|+++.+++.. .||.+.|++++++.|+.+++.
T Consensus 414 ~ai~~ll~~~~~~r~~m~~~ar~~~~---~FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 414 DAILEVLRMRETERLEIAAAARKRAN---RFSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHhh
Confidence 99999998 67889999999998763 399999999999999988763
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.8e-21 Score=199.32 Aligned_cols=261 Identities=22% Similarity=0.295 Sum_probs=116.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHc
Q 002431 173 SNLAGLFMESGDLNRALQYYKEAVK-L-KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYER 249 (922)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 249 (922)
..++.++...|++++|++.+++... . .|+++..|..++.+....+++++|+..|++++...+. ...+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 4668899999999999999966544 4 4788888888999999999999999999999888776 5666677777 788
Q ss_pred CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCChHHHHhHHHHHHHcCChhHHHHHH
Q 002431 250 GQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ--PSHPQALTNLGNIYMEWNMLPAAASYY 327 (922)
Q Consensus 250 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~ 327 (922)
+++++|..++.+..+..++ ...+...+.++...++++++...++++.... +.++..+..+|.++.+.|+.++|+..|
T Consensus 91 ~~~~~A~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGD-PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccccccc-cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998888765543 4566777788888899999999998877654 567788889999999999999999999
Q ss_pred HHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHH
Q 002431 328 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 407 (922)
Q Consensus 328 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 407 (922)
+++++.+|++..+...++.++...|+.+++.+.++...+..|.++..+..+|.++..+|++++|+.+|+++++.+|+++.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 99999999999999999999999999999888888888887888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002431 408 AHANLASAYKDSGHVEAAIKSYKQALLL 435 (922)
Q Consensus 408 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 435 (922)
+...+|.++...|+.++|.++++++++.
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999988887653
|
|
| >cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-20 Score=206.38 Aligned_cols=336 Identities=17% Similarity=0.149 Sum_probs=215.1
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccC--c----eEECCCCCH--------H
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAE--H----FVDVSAMSS--------D 602 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~--------~ 602 (922)
+||.++.+++...++.+.+..+.+.+.+.++||++++.......... ....... + |........ .
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 79 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCFE-ETKDGTLPVRVRGDWLPRSIFGRFHILCAYLR 79 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcch-hccCCeeEEEEEeEEEcchhhHhHHHHHHHHH
Confidence 58999999988888889999999999999999999986432211111 1111101 1 111100010 0
Q ss_pred HHH-----HHHHhCCCeEEEcCCCcCCCCchh--hhhc-CCCceEEeccccCCCCCCC---c--------------ccEE
Q 002431 603 MIA-----KLINEDKIQILINLNGYTKGARNE--IFAM-QPAPIQVSYMGFPGTTGAS---Y--------------IDYL 657 (922)
Q Consensus 603 ~~~-----~~i~~~~~dil~~~~~~~~~~~~~--~~~~-~~apvq~~~~g~~~t~g~~---~--------------~d~~ 657 (922)
.+. ..++..++||++ ++..... +... ++.|+.... .+|...... . .-+.
T Consensus 80 ~~~~~~~~~~~~~~~~Dvi~-----~~~~~~~~~~~~~~~~~~~i~~~-h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 153 (392)
T cd03805 80 MLYLALYLLLLPDEKYDVFI-----VDQVSACVPLLKLFSPSKILFYC-HFPDQLLAQRGSLLKRLYRKPFDWLEEFTTG 153 (392)
T ss_pred HHHHHHHHHhcccCCCCEEE-----EcCcchHHHHHHHhcCCcEEEEE-ecChHHhcCCCcHHHHHHHHHHHHHHHHHhh
Confidence 011 134567999995 3332222 2221 225655443 234321110 0 0123
Q ss_pred EecCccCCcCccCCCcccee-ecCCc--cccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHH
Q 002431 658 VTDEFVSPLRYAHIYSEKLV-HVPHC--YFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNT 732 (922)
Q Consensus 658 ~~d~~~~~~~~~~~~~e~~~-~lp~~--~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~ 732 (922)
.+|.+++++.....+.++.+ ..+.. .+.+++.......+ +.....+...+.+++.++|+.++|+ .|+.+.++++
T Consensus 154 ~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~-~~~~~~~~~~~~~~~~~~i~~~grl~~~Kg~~~ll~a 232 (392)
T cd03805 154 MADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFES-TSEDPDPGLLIPKSGKKTFLSINRFERKKNIALAIEA 232 (392)
T ss_pred CceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCc-ccccccccccccCCCceEEEEEeeecccCChHHHHHH
Confidence 45666666554222222111 11111 12222221111111 1111134445566777888888875 5999999999
Q ss_pred HHHHHhhC---CCeEEEEecCChhh-------HHHHHHHHHH-cCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC
Q 002431 733 WCNILRRV---PNSALWLLRFPAAG-------EMRLRAYAVA-QGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA 801 (922)
Q Consensus 733 ~~~il~~~---p~~~l~~~~~~~~~-------~~~l~~~~~~-~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g 801 (922)
+.++.+.. |+.+|+++|+++.. .+.+++.+.+ .|+ .++|.|+|.++..+...+|..+|++|.|+.++|
T Consensus 233 ~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l-~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~ 311 (392)
T cd03805 233 FAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLL-EDQVIFLPSISDSQKELLLSSARALLYTPSNEH 311 (392)
T ss_pred HHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCC-CceEEEeCCCChHHHHHHHhhCeEEEECCCcCC
Confidence 99998887 89999999987531 2678888888 999 599999999999999999999999999998898
Q ss_pred -hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCC
Q 002431 802 -HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLF 880 (922)
Q Consensus 802 -~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 880 (922)
|++++|||+||+|||+.........+.. |-.+.++..|++++++.+.++..|++.+.+++++.++.. ...|
T Consensus 312 ~g~~~lEAma~G~PvI~s~~~~~~e~i~~------~~~g~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~--~~~~ 383 (392)
T cd03805 312 FGIVPLEAMYAGKPVIACNSGGPLETVVD------GETGFLCEPTPEEFAEAMLKLANDPDLADRMGAAGRKRV--KEKF 383 (392)
T ss_pred CCchHHHHHHcCCCEEEECCCCcHHHhcc------CCceEEeCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHH--HHhc
Confidence 9999999999999998765544443331 333424556899999999999999999999999998876 3469
Q ss_pred ChHHHHHHH
Q 002431 881 DTARWVKNL 889 (922)
Q Consensus 881 ~~~~~~~~~ 889 (922)
+++.+++++
T Consensus 384 s~~~~~~~~ 392 (392)
T cd03805 384 STEAFAERL 392 (392)
T ss_pred CHHHHhhhC
Confidence 999888763
|
ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-17 Score=184.82 Aligned_cols=299 Identities=14% Similarity=-0.007 Sum_probs=143.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcC
Q 002431 37 LLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA-DAWSNLASAYMRKG 115 (922)
Q Consensus 37 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g 115 (922)
...|...+..|+++.|.+.+.++.+..|+....+...|.++.+.|+++.|.+++.++.+..|++. .+....+.++...|
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~ 167 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN 167 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC
Confidence 33444445555555555555555555544444444555555555555555555555555444432 23333455555555
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195 (922)
Q Consensus 116 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (922)
++++|...++++.+..|+++.++..++.++...|++++|.+.+.+..+....+...+..+
T Consensus 168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l-------------------- 227 (409)
T TIGR00540 168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADL-------------------- 227 (409)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH--------------------
Confidence 555555555555555555555555555555555555555555555544422221111000
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-----ChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 002431 196 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-----NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 270 (922)
Q Consensus 196 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 270 (922)
.......+...+..+++.+.+.++.+..| +...+..++..+...|++++|.+.++++++..|++.
T Consensus 228 ----------~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 228 ----------EQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred ----------HHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 00111111122222223334444444333 244444445555555555555555555555444443
Q ss_pred HHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh--HHHHhHHHHHHHcCChhHHHHHHH--HHHhcCCCCchhhhhH
Q 002431 271 EAY--NNLGNALKDVGRVDEAIQCYNQCLSLQPSHP--QALTNLGNIYMEWNMLPAAASYYK--ATLAVTTGLSAPFNNL 344 (922)
Q Consensus 271 ~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~--~a~~~~~~~~~~~~~l 344 (922)
... ..........++.+.+++.++++++..|+++ .....+|.++.+.|++++|.++|+ .+++..|+... +..+
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~L 376 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMA 376 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHH
Confidence 211 1111122223455555666666666666666 555566666666666666666666 34444454433 3366
Q ss_pred HHHHHHcCCHHHHHHHHHHHHc
Q 002431 345 AVIYKQQGNYADAISCYNEVLR 366 (922)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~ 366 (922)
|.++.+.|+.++|.+++++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=198.86 Aligned_cols=318 Identities=14% Similarity=0.190 Sum_probs=208.3
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC------HHHHHHHHHhC
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS------SDMIAKLINED 611 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~ 611 (922)
||.++.+++..+++..++..+.+.+.+.+++|++++...... .....+......++.+.... ...+.+.++..
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEG-DYDDEIEKLGGKIYYIPARKKNPLKYFKKLYKLIKKN 79 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCc-chHHHHHHcCCeEEEecCCCccHHHHHHHHHHHHhcC
Confidence 688899988777888999999999998899999988765432 23444555555454333211 24566777889
Q ss_pred CCeEEEcCCCcCCCCchhhhhc-CCCceEEecc-ccCCCCC-CCc---------ccEEEecCccCCcCccC--C----Cc
Q 002431 612 KIQILINLNGYTKGARNEIFAM-QPAPIQVSYM-GFPGTTG-ASY---------IDYLVTDEFVSPLRYAH--I----YS 673 (922)
Q Consensus 612 ~~dil~~~~~~~~~~~~~~~~~-~~apvq~~~~-g~~~t~g-~~~---------~d~~~~d~~~~~~~~~~--~----~~ 673 (922)
++||++-.+.+... -..++.. ...|+.+.+. +...... ... .-+..+|.+++++.... . ..
T Consensus 80 ~~Dvv~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 158 (358)
T cd03812 80 KYDIVHVHGSSASG-FILLAAKKAGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLFGKVKN 158 (358)
T ss_pred CCCEEEEeCcchhH-HHHHHHhhCCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHHHHhCCCc
Confidence 99999433322111 1111121 2346554331 1111111 110 01123455555544311 1 12
Q ss_pred cceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCC
Q 002431 674 EKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFP 751 (922)
Q Consensus 674 e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~ 751 (922)
+++.-+|+..- .....+.+.....+.+.+.+++.++++.++|+ .|+.+.+++++..+.+..|+.+++|+|+|
T Consensus 159 ~~~~vi~ngvd------~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g 232 (358)
T cd03812 159 KKFKVIPNGID------LEKFIFNEEIRKKRRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDG 232 (358)
T ss_pred ccEEEEeccCc------HHHcCCCchhhhHHHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 33333443221 11111111111225556777788888888875 59999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHH
Q 002431 752 AAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGS 830 (922)
Q Consensus 752 ~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~ 830 (922)
+. .+.+++.+++.|+ .++|.|.|. ..+...+|+.+|++|.|+.++| |++++|||++|+|||+........-++
T Consensus 233 ~~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~-- 306 (358)
T cd03812 233 EL-EEEIKKKVKELGL-EDKVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEVDLT-- 306 (358)
T ss_pred ch-HHHHHHHHHhcCC-CCcEEEecc--cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchhhhhc--
Confidence 86 7788999999999 599999998 5567778999999999998888 999999999999999776554443332
Q ss_pred HHHhcCCCCcccc-CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002431 831 LCLATGLGEEMIV-NSMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (922)
Q Consensus 831 ~~~~~g~~~~~i~-~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~ 874 (922)
. +..- +.. ++++++++++.++.+|++.++.++...+...
T Consensus 307 ---~-~~~~-~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~~ 346 (358)
T cd03812 307 ---D-LVKF-LSLDESPEIWAEEILKLKSEDRRERSSESIKKKGL 346 (358)
T ss_pred ---c-CccE-EeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhccc
Confidence 1 2222 333 4569999999999999999888877666543
|
capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1). |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.2e-17 Score=169.56 Aligned_cols=426 Identities=18% Similarity=0.197 Sum_probs=320.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
...++..+.-.+..++|.+.++..+.+++..|...+.....|..+...|+-++|..+...++..++.+..+|..+|.++.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 44567777778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (922)
...+|++|+++|..++..+|+|...+..++.+..+.++++.....-.+.++..|.....|...+..+...|++..|..++
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhcC---CCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHH
Q 002431 193 KEAVKLK---PTF-----PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAI 263 (922)
Q Consensus 193 ~~~l~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l 263 (922)
+...+.. |+. ............+.|..++|.+.+.+.-...-+ .......+.++.+.+++++|...+...+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 8887754 322 124455566777888888888877765443333 4455677899999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHH-HHHHHHhcCCCCchhh
Q 002431 264 GCDPRFLEAYNNLGNALKDVGRVDEAI-QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS-YYKATLAVTTGLSAPF 341 (922)
Q Consensus 264 ~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~ 341 (922)
..+|++...+..+-.++.+-.+.-+++ ..|...-+..|. ...-..++.....-.++..... ++...++. ..+.++
T Consensus 247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K--g~p~vf 323 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSK--GVPSVF 323 (700)
T ss_pred hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhc--CCCchh
Confidence 999999988888777776444444555 455544443333 2233333333332233333322 22333322 223333
Q ss_pred hhHHHHHHHcCCH---HHHHHHHHHHHcc------------CCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002431 342 NNLAVIYKQQGNY---ADAISCYNEVLRI------------DPLAA--DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 342 ~~la~~~~~~g~~---~~A~~~~~~al~~------------~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
..+-..|..-.+. ++-+..|...+.- .|..+ ..++.++.-+...|+++.|..+...|+...|+
T Consensus 324 ~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT 403 (700)
T KOG1156|consen 324 KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT 403 (700)
T ss_pred hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch
Confidence 3333333222111 1111112222211 12222 35667888899999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhH
Q 002431 405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDR 461 (922)
Q Consensus 405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 461 (922)
.++.+..-|+++...|++++|..+++.+.+++-.+...-..-+.-.......++|..
T Consensus 404 liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 404 LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHH
Confidence 999999999999999999999999999999987665444344444444444555543
|
|
| >PLN02846 digalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=194.84 Aligned_cols=325 Identities=9% Similarity=-0.023 Sum_probs=201.5
Q ss_pred ccceeeeecCCCCCC--hhHhhhhHHhhcCCCCC-eEEEEEecCCCCC---------------hHHHHHHHhccC----c
Q 002431 535 RRLRVGYVSSDFGNH--PLSHLMGSVFGMHNKEN-VEVFCYALSPNDG---------------TEWRQRTQSEAE----H 592 (922)
Q Consensus 535 ~~~rig~~s~~~~~h--~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~---------------~~~~~~~~~~~~----~ 592 (922)
.++||++++..+--. ++...+..+...+-+.+ .||+++.+..... ..-...++.... +
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r 82 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISF 82 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEE
Confidence 569999999877443 44455555666777777 6999987642110 000111221111 1
Q ss_pred eEE--C------------CCCCHHHHHHHHHhCCCeEEEcCCCcCCCC-chhhh--h----cCCCceEEeccccC-CC--
Q 002431 593 FVD--V------------SAMSSDMIAKLINEDKIQILINLNGYTKGA-RNEIF--A----MQPAPIQVSYMGFP-GT-- 648 (922)
Q Consensus 593 ~~~--~------------~~~~~~~~~~~i~~~~~dil~~~~~~~~~~-~~~~~--~----~~~apvq~~~~g~~-~t-- 648 (922)
+.. + ..+...++.+.|++.++||+ |.+.- .++.. + .|.-++..++.... ..
T Consensus 83 ~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVI-----Hv~tP~~LG~~~~g~~~~~k~~~vV~tyHT~y~~Y~~ 157 (462)
T PLN02846 83 LPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIA-----VLEEPEHLTWYHHGKRWKTKFRLVIGIVHTNYLEYVK 157 (462)
T ss_pred ecccccccCcccccccccccCChHHHHHHHHhcCCCEE-----EEcCchhhhhHHHHHHHHhcCCcEEEEECCChHHHHH
Confidence 111 0 11234678999999999999 55422 23333 2 23334444443322 11
Q ss_pred -CCC---C---------cccEEEecCccCCcCccCCCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCc--
Q 002431 649 -TGA---S---------YIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDK-- 713 (922)
Q Consensus 649 -~g~---~---------~~d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~-- 713 (922)
.+. . .+-.+.+|.++.|+.....+.+..+..++ .+ + .....+.....+..++ +++.
T Consensus 158 ~~~~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~l~~~~i~~v~-GV-----d--~~~f~~~~~~~~~~~~-~~~~~~ 228 (462)
T PLN02846 158 REKNGRVKAFLLKYINSWVVDIYCHKVIRLSAATQDYPRSIICNVH-GV-----N--PKFLEIGKLKLEQQKN-GEQAFT 228 (462)
T ss_pred HhccchHHHHHHHHHHHHHHHHhcCEEEccCHHHHHHhhCEEecCc-ee-----c--hhhcCCCcccHhhhcC-CCCCcc
Confidence 010 0 01012368888888754334444443332 11 1 1111222222222232 3443
Q ss_pred EEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 714 FIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 714 ~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
.+++.++|+ .|+.+.+++++.++.+..|+.+|+|+|+||. ++.|++.+.++|++ .+| |.|..+.++ +|+.+|
T Consensus 229 ~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~-~~~L~~~a~~l~l~-~~v-f~G~~~~~~---~~~~~D 302 (462)
T PLN02846 229 KGAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGED-SDEVKAAAEKLELD-VRV-YPGRDHADP---LFHDYK 302 (462)
T ss_pred eEEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCcc-HHHHHHHHHhcCCc-EEE-ECCCCCHHH---HHHhCC
Confidence 356677776 4999999999999988899999999999998 89999999999994 555 899765554 456679
Q ss_pred EEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002431 792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKL 870 (922)
Q Consensus 792 v~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~ 870 (922)
|||.||.+++ |++++|||+||+|||+...+. ..++.. |-+. +..+|.+++++++.+++.++. ..++...
T Consensus 303 vFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~------~~~v~~-~~ng-~~~~~~~~~a~ai~~~l~~~~--~~~~~~a 372 (462)
T PLN02846 303 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS------NEFFKQ-FPNC-RTYDDGKGFVRATLKALAEEP--APLTDAQ 372 (462)
T ss_pred EEEECCCcccchHHHHHHHHcCCcEEEecCCC------cceeec-CCce-EecCCHHHHHHHHHHHHccCc--hhHHHHH
Confidence 9999999999 999999999999999765432 122222 4444 566899999999999887532 2223333
Q ss_pred HhhcccCCCCChHHHHHHHHHHHHH
Q 002431 871 KSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
++ .||++..++++++.|+-
T Consensus 373 ~~------~~SWe~~~~~l~~~~~~ 391 (462)
T PLN02846 373 RH------ELSWEAATERFLRVADL 391 (462)
T ss_pred HH------hCCHHHHHHHHHHHhcc
Confidence 22 49999999999999863
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-16 Score=164.19 Aligned_cols=442 Identities=15% Similarity=0.076 Sum_probs=307.5
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
+.-...+..+|+|++|.+...+++...|++..++...-.++.+.++|++|+++.++-...... ....+..+.|.++.+.
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHHccc
Confidence 344566778899999999999999999999999999999999999999999665543322212 2223789999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (922)
.++|+..++ ..++.+..+....+++++++|+|++|..+|+.+.+.+.++.+............. ..+. ..+..
T Consensus 95 ~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~~--~~q~v 167 (652)
T KOG2376|consen 95 LDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQVQ--LLQSV 167 (652)
T ss_pred HHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhHH--HHHhc
Confidence 999999998 4456667788889999999999999999999999888776665433322221110 1111 22333
Q ss_pred hhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCC-------HHHHHHHHHHHHHcCChHHHHHHH
Q 002431 163 RIQPT-FAIAWSNLAGLFMESGDLNRALQYYKEAVKLK--------PTF-------PDAYLNLGNVYKALGMPQEAIMCY 226 (922)
Q Consensus 163 ~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~-------~~~~~~l~~~~~~~g~~~~A~~~~ 226 (922)
...|. +...+++.+.++...|+|.+|++.+++++++. .++ ..+...++.++..+|+.++|..+|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 33443 67788999999999999999999999995431 111 126778899999999999999999
Q ss_pred HHHHhhCCC-----hhHHHhHHHHHHHcCChH-HHHHHHHHHHhcCCC----------cHHHHHHHHHHHHHcCCHHHHH
Q 002431 227 QRAVQTRPN-----AIAFGNLASTYYERGQAD-MAILYYKQAIGCDPR----------FLEAYNNLGNALKDVGRVDEAI 290 (922)
Q Consensus 227 ~~~~~~~p~-----~~~~~~l~~~~~~~g~~~-~A~~~~~~~l~~~p~----------~~~~~~~l~~~~~~~g~~~~A~ 290 (922)
...+..+|. ..+-+++..+-....-++ .++..++......++ -...+.+.+...+..+.-+.+.
T Consensus 248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r 327 (652)
T KOG2376|consen 248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVR 327 (652)
T ss_pred HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999998765 223333333222222122 122222221111111 1123445555555566666666
Q ss_pred HHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCC-chhhhhHHHHHHHcCCHHHHHHHHHHHH----
Q 002431 291 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL-SAPFNNLAVIYKQQGNYADAISCYNEVL---- 365 (922)
Q Consensus 291 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al---- 365 (922)
+.....-...|....-.........+...+.+|..++....+..|.. ..+...++.+...+|+++.|++.+...+
T Consensus 328 ~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 328 ELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 55554433344433222333333344447889999999999988887 6678888999999999999999999433
Q ss_pred ----ccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002431 366 ----RIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI-------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434 (922)
Q Consensus 366 ----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 434 (922)
+.. ..+.+-..+-..+.+.++.+.|...+.+++.- .+.....+..++..-.+.|+-++|...++++++
T Consensus 408 ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 408 SSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred hhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 222 33444455556677777777777777776653 223334566677888888999999999999999
Q ss_pred cCCCCHHHHHHHHHhhccc
Q 002431 435 LRPDFPEATCNLLHTLQCV 453 (922)
Q Consensus 435 ~~p~~~~~~~~l~~~~~~~ 453 (922)
.+|++..+...++.++...
T Consensus 487 ~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 487 FNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred hCCchHHHHHHHHHHHHhc
Confidence 9999999999999888763
|
|
| >TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=201.45 Aligned_cols=326 Identities=12% Similarity=0.083 Sum_probs=213.5
Q ss_pred CChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC-----CCCH-----------HHHH-HHHHh
Q 002431 548 NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS-----AMSS-----------DMIA-KLINE 610 (922)
Q Consensus 548 ~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----------~~~~-~~i~~ 610 (922)
.+++..++..+.+.+.+.++||++++............+. ....++.+. .... ..+. ..++.
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVA-PGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARH 97 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccC-CCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567788999999999999999999864322110010111 111222221 1110 0112 33332
Q ss_pred --CCCeEEEcCCCcCCCCchhhhh-----cCCCceEEeccccCC--CCCC-----Cc--c-------cEEEecCccCCcC
Q 002431 611 --DKIQILINLNGYTKGARNEIFA-----MQPAPIQVSYMGFPG--TTGA-----SY--I-------DYLVTDEFVSPLR 667 (922)
Q Consensus 611 --~~~dil~~~~~~~~~~~~~~~~-----~~~apvq~~~~g~~~--t~g~-----~~--~-------d~~~~d~~~~~~~ 667 (922)
.++||+ |+|.....+++ ....|+.+++.+... ...+ +. . -+..+|.+++.+.
T Consensus 98 ~~~~~Dii-----h~h~~~~~~~~~~~~~~~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~ 172 (405)
T TIGR03449 98 EPGYYDLI-----HSHYWLSGQVGWLLRDRWGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIANTD 172 (405)
T ss_pred cCCCCCeE-----EechHHHHHHHHHHHHhcCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEEECCH
Confidence 479999 77754332222 123588877654311 0000 00 0 0113455555443
Q ss_pred c-cC-------CCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHH
Q 002431 668 Y-AH-------IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNIL 737 (922)
Q Consensus 668 ~-~~-------~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il 737 (922)
. .. ...+++..+|++.-.. .. .+......+.++|++++.++|++++|+ .|+.+.+++++.+++
T Consensus 173 ~~~~~~~~~~~~~~~ki~vi~ngvd~~------~~-~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~ 245 (405)
T TIGR03449 173 EEARDLVRHYDADPDRIDVVAPGADLE------RF-RPGDRATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELL 245 (405)
T ss_pred HHHHHHHHHcCCChhhEEEECCCcCHH------Hc-CCCcHHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHH
Confidence 2 11 1123444444432111 01 111122367788998888888888876 599999999999999
Q ss_pred hhCCC--eEEEEecCCh----hhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHH
Q 002431 738 RRVPN--SALWLLRFPA----AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILW 810 (922)
Q Consensus 738 ~~~p~--~~l~~~~~~~----~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~ 810 (922)
+..|+ .+|+++|.+. ...+.+++.+++.|+ .++|.|+|.++.++...+|+.+|+++.|+..+| |++++|||+
T Consensus 246 ~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l-~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma 324 (405)
T TIGR03449 246 DRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGI-ADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQA 324 (405)
T ss_pred hhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCC-CceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHH
Confidence 98887 8889998532 225788999999999 489999999999999999999999999988888 999999999
Q ss_pred cCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHH
Q 002431 811 AGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKN 888 (922)
Q Consensus 811 ~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (922)
+|+|||+........- +. -|-.+ +++ .|++++++.+.++.+|++.+..++++.++... .|+++.++++
T Consensus 325 ~G~Pvi~~~~~~~~e~-----i~-~~~~g-~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~---~fsw~~~~~~ 394 (405)
T TIGR03449 325 CGTPVVAARVGGLPVA-----VA-DGETG-LLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHAA---GFSWAATADG 394 (405)
T ss_pred cCCCEEEecCCCcHhh-----hc-cCCce-EECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---hCCHHHHHHH
Confidence 9999997654333221 11 13444 443 48999999999999999999999999887642 4999999999
Q ss_pred HHHHHHHHH
Q 002431 889 LERSYFKMW 897 (922)
Q Consensus 889 ~e~~y~~~~ 897 (922)
++++|.++.
T Consensus 395 ~~~~y~~~~ 403 (405)
T TIGR03449 395 LLSSYRDAL 403 (405)
T ss_pred HHHHHHHHh
Confidence 999999875
|
Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-17 Score=178.94 Aligned_cols=294 Identities=12% Similarity=0.006 Sum_probs=171.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHc
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADA-WSNLASAYMRK 114 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~ 114 (922)
.+..|......|++++|.+.+.+..+..+.....+...+....+.|+++.|..++.++.+.+|++... ....+..+...
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 34556666666777777766665544332222233333444477777777777777777766665432 23346677777
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH--------HHHHHHHHHcCCHH
Q 002431 115 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW--------SNLAGLFMESGDLN 186 (922)
Q Consensus 115 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--------~~la~~~~~~g~~~ 186 (922)
|++++|...++++.+.+|+++.++..++.+|...|++++|.+.+.++.+..+.+.... ..+........+.+
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~ 246 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSE 246 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 7777777777777777777777777777777777777777777776666544432211 11111122223333
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcC
Q 002431 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCD 266 (922)
Q Consensus 187 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 266 (922)
...+.++...+..|+++.+...++..+...|+.++|.+.+++.++..++.......+. ...++.+++++.+++.++.+
T Consensus 247 ~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 247 GLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPR--LKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCChHHHHHHHHHHHhhC
Confidence 3444444444444556666666666666666666666666666665444432222222 23366666666666666666
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHh
Q 002431 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 332 (922)
Q Consensus 267 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 332 (922)
|+++..+..+|.++...+++++|.+.|+++++..|++. .+..++.++.+.|+.++|..+|++++.
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666665533 234556666666666666666655544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-18 Score=196.26 Aligned_cols=270 Identities=16% Similarity=0.072 Sum_probs=219.4
Q ss_pred hCCCchH--HHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHH
Q 002431 28 RNPLRTD--NLLLLGAIYYQ---LHDYDMCIARNEEALRLEPRFAECYGNMANAWKEK---------GDIDLAIRYYLVA 93 (922)
Q Consensus 28 ~~p~~~~--~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a 93 (922)
..+.+.+ .++..|..... .+++++|+..|+++++.+|+++.++..+|.++... +++++|+..++++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 4444444 34445544432 35689999999999999999999999999887643 3488999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 002431 94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 173 (922)
Q Consensus 94 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 173 (922)
++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|.+...+.
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCC
Q 002431 174 NLAGLFMESGDLNRALQYYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ 251 (922)
Q Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 251 (922)
.++.+++..|++++|+..++++++.. |+++..+..+|.++...|++++|...+.++....|+ ......++..|...|+
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 77777888999999999999998775 778888999999999999999999999998887777 6667777888888774
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002431 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300 (922)
Q Consensus 252 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 300 (922)
+|...++++++..............++.-.|+.+.+... +++.+.+
T Consensus 491 --~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 491 --RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777777776643222221223366777777887777766 6666543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-17 Score=178.77 Aligned_cols=293 Identities=15% Similarity=0.079 Sum_probs=240.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHc
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLL-GAIYYQLHDYDMCIARNEEALRLEPRFAEC-YGNMANAWKEK 80 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~ 80 (922)
+..|...+..|+|++|.+.+.+..+..+. +..++.+ +....+.|+++.|..++.++.+..|++... ....+..+...
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 45677788899999999888886654333 4444444 666699999999999999999999987543 34559999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHcCCHH
Q 002431 81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHS--------NLGNLMKAQGLVQ 152 (922)
Q Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~--------~la~~~~~~g~~~ 152 (922)
|++++|...++++.+.+|+++.++..++.+|.+.|++++|++.+.++.+..+.+..... .+........+.+
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~ 246 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSE 246 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999999999999999999988765544222 2222222333444
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002431 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 153 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (922)
...+.++...+..|+++.+...++..+...|+.++|.+.+++.++. +.++......+.+ ..++.+++++.+++.++.
T Consensus 247 ~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 247 GLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhh
Confidence 5555555555566789999999999999999999999999999994 4455544444443 459999999999999999
Q ss_pred CCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002431 233 RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300 (922)
Q Consensus 233 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 300 (922)
+|+ ...+..+|.++...+++++|.+.|+++++..|++. .+..++.++.+.|+.++|.++|++.+...
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 998 77899999999999999999999999999999976 67789999999999999999999998753
|
|
| >cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-19 Score=194.96 Aligned_cols=334 Identities=16% Similarity=0.137 Sum_probs=221.5
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC--CC-----CHHHHHHHHHh
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS--AM-----SSDMIAKLINE 610 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~i~~ 610 (922)
||.++.+.+..+++...+..+++.+.+.++++.+++..... .....+......++.+. .. ....+.+.+++
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~--~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 78 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRG--ELGEELEEAGVPVYCLGKRPGRPDPGALLRLYKLIRR 78 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcch--hhhHHHHhcCCeEEEEecccccccHHHHHHHHHHHHh
Confidence 68899998888888899999999998888999888865332 23333444332232222 11 12567888899
Q ss_pred CCCeEEEcCCCcCCCCchhhhhc--CCCceEEeccccCCCCC--CCc----cc---EEEecCccCCcCccC-------CC
Q 002431 611 DKIQILINLNGYTKGARNEIFAM--QPAPIQVSYMGFPGTTG--ASY----ID---YLVTDEFVSPLRYAH-------IY 672 (922)
Q Consensus 611 ~~~dil~~~~~~~~~~~~~~~~~--~~apvq~~~~g~~~t~g--~~~----~d---~~~~d~~~~~~~~~~-------~~ 672 (922)
.++||++....++.... .+... +..|+..+..+.....+ ... +. ...+|.+++++.... ..
T Consensus 79 ~~~div~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 157 (365)
T cd03807 79 LRPDVVHTWMYHADLYG-GLAARLAGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEYHQAIGYP 157 (365)
T ss_pred hCCCEEEeccccccHHH-HHHHHhcCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHHHHHcCCC
Confidence 99999965443322111 11111 33466655444332211 100 00 012333333333211 11
Q ss_pred ccceeecCCccccCCCccccccCC-CCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEec
Q 002431 673 SEKLVHVPHCYFVNDYKQKNMDVL-DPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLR 749 (922)
Q Consensus 673 ~e~~~~lp~~~~~~~~~~~~~~~~-~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~ 749 (922)
.+++..+|+..-. ....+ .......|+++|++++.++++.+++. .|+.+.+++++.++.+..|+.+|+++|
T Consensus 158 ~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G 231 (365)
T cd03807 158 PKKIVVIPNGVDT------ERFSPDLDARARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVG 231 (365)
T ss_pred hhheeEeCCCcCH------HhcCCcccchHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 2333334432111 00101 11112256788999888888888875 599999999999999889999999999
Q ss_pred CChhhHHHHHHHHH-HcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhh
Q 002431 750 FPAAGEMRLRAYAV-AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRV 827 (922)
Q Consensus 750 ~~~~~~~~l~~~~~-~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~ 827 (922)
.++. ...++.... +.|+ .++|.|.|. ..+...+|+.+|+++.|+.++| |++++|||++|+|||+........-+
T Consensus 232 ~~~~-~~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~~~e~~ 307 (365)
T cd03807 232 DGPD-RANLELLALKELGL-EDKVILLGE--RSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGDNAELV 307 (365)
T ss_pred CCcc-hhHHHHHHHHhcCC-CceEEEccc--cccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCChHHHh
Confidence 8865 556666665 8888 589999995 4567788999999999998888 99999999999999986654333222
Q ss_pred HHHHHHhcCCCCccc-cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 828 AGSLCLATGLGEEMI-VNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 828 ~~~~~~~~g~~~~~i-~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
. . .+.++ .+|.+++++.+..+.+|++.+..++++.++.. ...|+++.+++++++.|+
T Consensus 308 ~-----~---~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~--~~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 308 G-----D---TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERI--EENFSIEAMVEAYEELYR 365 (365)
T ss_pred h-----c---CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHhC
Confidence 2 2 23122 35899999999999999999999999988876 446999999999999884
|
WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=191.41 Aligned_cols=251 Identities=16% Similarity=0.072 Sum_probs=219.9
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002431 81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRK---------GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLV 151 (922)
Q Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 151 (922)
+++++|+..|+++++.+|+++.++..+|.++... +++++|...++++++.+|+++.++..+|.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4679999999999999999999999999887643 3489999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002431 152 QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 231 (922)
Q Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 231 (922)
++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|.++..+..++.++...|++++|+..+++++.
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988777777778889999999999999988
Q ss_pred hC-CC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHh
Q 002431 232 TR-PN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN 309 (922)
Q Consensus 232 ~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 309 (922)
.. |+ ...+..++.++...|++++|...+.++....|........++..+...| ++|...++++++.....+.....
T Consensus 435 ~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~ 512 (553)
T PRK12370 435 QHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL 512 (553)
T ss_pred hccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH
Confidence 75 55 6778899999999999999999999999889988888888999888888 47888888877654333333334
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcC
Q 002431 310 LGNIYMEWNMLPAAASYYKATLAVT 334 (922)
Q Consensus 310 la~~~~~~~~~~~A~~~~~~a~~~~ 334 (922)
...++.-.|+-+.+..+ +++.+..
T Consensus 513 ~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 513 LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77788888888888877 7766554
|
|
| >cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-19 Score=195.02 Aligned_cols=331 Identities=16% Similarity=0.178 Sum_probs=215.0
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCC-----------CHHHHH
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM-----------SSDMIA 605 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 605 (922)
|||.+++.. ..++++..+..+.+.+.+.++||.+++...... .............++... ....+.
T Consensus 1 mki~~~~~p-~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (371)
T cd04962 1 MKIGIVCYP-TYGGSGVVATELGKALARRGHEVHFITSSRPFR--LDEYSPNIFFHEVEVPQYPLFQYPPYDLALASKIA 77 (371)
T ss_pred CceeEEEEe-CCCCccchHHHHHHHHHhcCCceEEEecCCCcc--hhhhccCeEEEEecccccchhhcchhHHHHHHHHH
Confidence 577777732 224566788889999988889999887643211 111111111111111110 024567
Q ss_pred HHHHhCCCeEEEcCCCcCCCCc----hhhhhc-----CCCceEEeccccCCC-CCC-Cccc------EEEecCccCCcCc
Q 002431 606 KLINEDKIQILINLNGYTKGAR----NEIFAM-----QPAPIQVSYMGFPGT-TGA-SYID------YLVTDEFVSPLRY 668 (922)
Q Consensus 606 ~~i~~~~~dil~~~~~~~~~~~----~~~~~~-----~~apvq~~~~g~~~t-~g~-~~~d------~~~~d~~~~~~~~ 668 (922)
+.|++.++||+ |.|... ..+++. +..|+.++..|.... .+. +... +..+|.+++.+..
T Consensus 78 ~~i~~~~~div-----h~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~ 152 (371)
T cd04962 78 EVAKRYKLDLL-----HVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVSES 152 (371)
T ss_pred HHHhcCCccEE-----eecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEcCHH
Confidence 88889999999 554322 122221 145777765543211 010 0000 1123555544443
Q ss_pred cC-----C--CccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhh
Q 002431 669 AH-----I--YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRR 739 (922)
Q Consensus 669 ~~-----~--~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~ 739 (922)
.. . ..+++..+|+..- ...+. +......+.+++++++.++++.++|+ .|+.+.++++|.++.++
T Consensus 153 ~~~~~~~~~~~~~~i~vi~n~~~------~~~~~-~~~~~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~ 225 (371)
T cd04962 153 LRQETYELFDITKEIEVIPNFVD------EDRFR-PKPDEALKRRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE 225 (371)
T ss_pred HHHHHHHhcCCcCCEEEecCCcC------HhhcC-CCchHHHHHhcCCCCCCeEEEEecccccccCHHHHHHHHHHHHhc
Confidence 11 1 1233434443221 10111 11112356678888888888888875 59999999999988665
Q ss_pred CCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeee
Q 002431 740 VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITL 818 (922)
Q Consensus 740 ~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~ 818 (922)
++.+|+++|.|+. .+.+++.+.+.|+ .++|.|.|.. .+...+|..+|+++.|+.++| |++++|||++|+|||+.
T Consensus 226 -~~~~l~i~G~g~~-~~~~~~~~~~~~~-~~~v~~~g~~--~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s 300 (371)
T cd04962 226 -VPARLLLVGDGPE-RSPAERLARELGL-QDDVLFLGKQ--DHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVAS 300 (371)
T ss_pred -CCceEEEEcCCcC-HHHHHHHHHHcCC-CceEEEecCc--ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEe
Confidence 5589999999876 7788999999999 4899999975 456777999999999998888 99999999999999976
Q ss_pred cCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 002431 819 PLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKM 896 (922)
Q Consensus 819 ~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 896 (922)
+.....+-+. . |..+ +++ .|.+++++++..++.|++.+..++++.++.. ...|+++.+++++.+.|+++
T Consensus 301 ~~~~~~e~i~-----~-~~~G-~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~--~~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 301 NAGGIPEVVK-----H-GETG-FLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRA--AERFDSERIVPQYEALYRRL 371 (371)
T ss_pred CCCCchhhhc-----C-CCce-EEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHhC
Confidence 5543333221 1 3444 444 3889999999999999999999999998874 23599999999999999863
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-19 Score=194.54 Aligned_cols=323 Identities=13% Similarity=0.202 Sum_probs=200.9
Q ss_pred ceeeeecCCCC-CChhHhhhhHHhhcCCCC--CeEEEEEecCCCCChHHHHHHHhccC-ceEECC--C--CCHHHHHHHH
Q 002431 537 LRVGYVSSDFG-NHPLSHLMGSVFGMHNKE--NVEVFCYALSPNDGTEWRQRTQSEAE-HFVDVS--A--MSSDMIAKLI 608 (922)
Q Consensus 537 ~rig~~s~~~~-~h~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~--~~~~~~~~~i 608 (922)
|||.+++..+. .+++.+++..+.+++.+. ++|+++++..........+.+..... .-..+. . .....+.+.+
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 80 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSKWL 80 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHHHhcchhcccccchhhhhcccHHHHHHHHHH
Confidence 68999987664 377889999999999888 79999888654322212222210000 000111 0 1135678899
Q ss_pred HhCCCeEEEcCCCcCCCCchhhhhc---C--CCceE-Eeccc--cCCCCCCCcccEEEecCccCCcCccCCC-------c
Q 002431 609 NEDKIQILINLNGYTKGARNEIFAM---Q--PAPIQ-VSYMG--FPGTTGASYIDYLVTDEFVSPLRYAHIY-------S 673 (922)
Q Consensus 609 ~~~~~dil~~~~~~~~~~~~~~~~~---~--~apvq-~~~~g--~~~t~g~~~~d~~~~d~~~~~~~~~~~~-------~ 673 (922)
++.++||+ |++.....+++. + ..|+. ++|.. .+.........+..+|.+++++.....+ .
T Consensus 81 ~~~~~Dii-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~d~~i~~S~~~~~~~~~~~~~~ 155 (359)
T PRK09922 81 KETQPDIV-----ICIDVISCLYANKARKKSGKQFKIFSWPHFSLDHKKHAECKKITCADYHLAISSGIKEQMMARGISA 155 (359)
T ss_pred HhcCCCEE-----EEcCHHHHHHHHHHHHHhCCCCeEEEEecCcccccchhhhhhhhcCCEEEEcCHHHHHHHHHcCCCH
Confidence 99999999 554433222221 1 12332 33321 1111111111234556666555542111 1
Q ss_pred cceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC----CCCCHHHHHHHHHHHhhCCCeEEEEec
Q 002431 674 EKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL----YKMDPEIFNTWCNILRRVPNSALWLLR 749 (922)
Q Consensus 674 e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~----~K~~~~~~~~~~~il~~~p~~~l~~~~ 749 (922)
+++..+|+.. +...... +. +. .++.++++.++|+ .|+...+++++.++. ++.+|+++|
T Consensus 156 ~ki~vi~N~i------d~~~~~~-~~--~~------~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG 217 (359)
T PRK09922 156 QRISVIYNPV------EIKTIII-PP--PE------RDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT---GEWQLHIIG 217 (359)
T ss_pred HHEEEEcCCC------CHHHccC-CC--cc------cCCCcEEEEEEEEecccCcCHHHHHHHHHhhC---CCeEEEEEe
Confidence 2333333321 1000000 00 00 1223556666653 488999999988763 478999999
Q ss_pred CChhhHHHHHHHHHHcCCCCCceEEcCCCC--cHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeec-CCcchh
Q 002431 750 FPAAGEMRLRAYAVAQGVQPDQIIFTDVAM--KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLP-LEKMAT 825 (922)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~--~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~-~~~~~~ 825 (922)
+|+. .+.+++.+++.|+ .++|.|+|.++ .++....|..+|+++.|+.++| |++++|||+||+|||+.. ......
T Consensus 218 ~g~~-~~~l~~~~~~~~l-~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~e 295 (359)
T PRK09922 218 DGSD-FEKCKAYSRELGI-EQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPRD 295 (359)
T ss_pred CCcc-HHHHHHHHHHcCC-CCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCChHH
Confidence 9987 8889999999999 58999999764 3667778899999999999999 999999999999999776 332222
Q ss_pred hhHHHHHHhcCCCCccc--cCCHHHHHHHHHHHhcCHHHH--HHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 826 RVAGSLCLATGLGEEMI--VNSMKEYEERAVSLALDRQKL--QALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 826 r~~~~~~~~~g~~~~~i--~~~~~~~~~~~~~l~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
++.. |..+ ++ ..|++++++++.++.+|++.| ...++.+++ |..+.+++++-++|..+.+
T Consensus 296 -----iv~~-~~~G-~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 358 (359)
T PRK09922 296 -----IIKP-GLNG-ELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIER-------FYEVLYFKNLNNALFSKLQ 358 (359)
T ss_pred -----HccC-CCce-EEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHHH-------hhHHHHHHHHHHHHHHHhc
Confidence 2211 4445 34 368999999999999999854 333333322 8889999999999987754
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-16 Score=153.65 Aligned_cols=443 Identities=14% Similarity=0.033 Sum_probs=310.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 002431 7 HQMYKSGSYKQALEHSNSVYERNPLR-TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDL 85 (922)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 85 (922)
.-+....+|..|+.+++-....+... ...-.++|.|++.+|+|++|+..|+-+...+..+++.+..++-+++-.|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 34667889999999998877555433 36678899999999999999999999988777788999999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002431 86 AIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 165 (922)
Q Consensus 86 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 165 (922)
|...-.++ |+++-....+-.+..+.++-++-...-+.. + +..+-...++.+.+..-.+++|++.|.+.+..+
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~L-q---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSL-Q---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHH-h---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 98876664 566666666666667777765544433333 2 233556778888888889999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHH
Q 002431 166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAST 245 (922)
Q Consensus 166 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 245 (922)
|+.......++.+|++..-++-+.+.+.-.++..|+++-+.+.++....+.=+-..|......+....... +-.+.-
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---~~f~~~ 258 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---YPFIEY 258 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---chhHHH
Confidence 99888888999999999999999999999999999998888888777766544334444333333221110 111111
Q ss_pred HHH-----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCCh
Q 002431 246 YYE-----RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320 (922)
Q Consensus 246 ~~~-----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 320 (922)
+++ -.+-+.|++.+-..++.-| ++..+++..|.++++..+|..+.+. .+|..|.-+...|.+....|+-
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IP---EARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIP---EARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhCh---HhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhh
Confidence 111 1234556666666655544 4777888888888888888776654 5788888888888887777765
Q ss_pred hHHHHHHHHHHhc-------C--CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHH
Q 002431 321 PAAASYYKATLAV-------T--TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA 391 (922)
Q Consensus 321 ~~A~~~~~~a~~~-------~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 391 (922)
....+.++-+-+. . -+.......++.+++-..++++.+.+++..-....++....++++.++...|++.+|
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~ea 412 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEA 412 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHH
Confidence 4444443333221 1 122333556778888888888888888888777777788888889999999999999
Q ss_pred HHHHHHHHhhC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH-HHHHHhhcccCChhhHhHHHHHHHH
Q 002431 392 IQDYIRAITIR-PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT-CNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 392 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
.+.|-+.-..+ .+.......|++||...|+.+-|.+.+-+. ..|...-.+ .-++..+..++.+--+.+.|++++.
T Consensus 413 Eelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 413 EELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 88887766554 333445567888999999988888777543 122222222 2233344444554445566665554
|
|
| >cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.5e-19 Score=193.85 Aligned_cols=330 Identities=12% Similarity=0.150 Sum_probs=212.8
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCc-eEECCC------CCHHHHHHHHHh
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEH-FVDVSA------MSSDMIAKLINE 610 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~i~~ 610 (922)
+|.++++.+..+++...+..+.+.+.+.+++|.+++..+..... ........ ...... .....+.+.|++
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVK---PPIDATIILNLNMSKNPLSFLLALWKLRKILRQ 77 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCcc---chhhccceEEecccccchhhHHHHHHHHHHHHh
Confidence 47788888888888899999999999889999888754322111 11111111 111111 012456788889
Q ss_pred CCCeEEEcCCCcCCCCchhhhh------cCCCceEEeccccCCCCCCCcc----cEEEecCccCCcCc-c------C-CC
Q 002431 611 DKIQILINLNGYTKGARNEIFA------MQPAPIQVSYMGFPGTTGASYI----DYLVTDEFVSPLRY-A------H-IY 672 (922)
Q Consensus 611 ~~~dil~~~~~~~~~~~~~~~~------~~~apvq~~~~g~~~t~g~~~~----d~~~~d~~~~~~~~-~------~-~~ 672 (922)
.++||++ ++.....+++ .+..|+.++..+.......... ....++.+...+.. . . ..
T Consensus 78 ~~pdiv~-----~~~~~~~~~~~l~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 152 (360)
T cd04951 78 FKPDVVH-----AHMFHANIFARLLRLFLPSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLTTNVSKEALDYFIASKAFN 152 (360)
T ss_pred cCCCEEE-----EcccchHHHHHHHHhhCCCCcEEEEeeccCchhHHHHHHHHHHhhccCceEEEcHHHHHHHHhccCCC
Confidence 9999994 4433222222 1233555554332211111101 11122222222111 0 0 12
Q ss_pred ccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecC
Q 002431 673 SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRF 750 (922)
Q Consensus 673 ~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~ 750 (922)
.+++..+|++.-..... . ........|++++++++.++++.++++ .|+.+.+++++.++.+..|+.+|+|+|+
T Consensus 153 ~~~~~~i~ng~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~ 227 (360)
T cd04951 153 ANKSFVVYNGIDTDRFR----K-DPARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGD 227 (360)
T ss_pred cccEEEEccccchhhcC----c-chHHHHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcC
Confidence 34555566533111100 0 001111256778888888887777754 5999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHH
Q 002431 751 PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG 829 (922)
Q Consensus 751 ~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~ 829 (922)
|+. .+.+++.+.+.|+ .++|.|+|. ..+...+|+.+|+++.|+.++| |++++|||++|+|||+.+......-+.
T Consensus 228 g~~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~- 302 (360)
T cd04951 228 GPL-RATLERLIKALGL-SNRVKLLGL--RDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGGVREVVG- 302 (360)
T ss_pred CCc-HHHHHHHHHhcCC-CCcEEEecc--cccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCChhhEec-
Confidence 886 7788999999999 489999996 4567778999999999998888 999999999999999765543333222
Q ss_pred HHHHhcCCCCccccCCHHHHHHHHHHHh-cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 830 SLCLATGLGEEMIVNSMKEYEERAVSLA-LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 830 ~~~~~~g~~~~~i~~~~~~~~~~~~~l~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
..|. .+...|++++++.+.++. .+++.+..++.. +... ...||++.+++++++.|+
T Consensus 303 ----~~g~--~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~--~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 303 ----DSGL--IVPISDPEALANKIDEILKMSGEERDIIGAR-RERI--VKKFSINSIVQQWLTLYT 359 (360)
T ss_pred ----CCce--EeCCCCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHH--HHhcCHHHHHHHHHHHhh
Confidence 1121 122478999999999998 566777766666 5544 346999999999999996
|
In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have |
| >cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-18 Score=188.98 Aligned_cols=334 Identities=16% Similarity=0.137 Sum_probs=217.0
Q ss_pred eeeeecCCCC-CChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEE-CCCCCHHHHHHHHHhCCCeE
Q 002431 538 RVGYVSSDFG-NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVD-VSAMSSDMIAKLINEDKIQI 615 (922)
Q Consensus 538 rig~~s~~~~-~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~di 615 (922)
||+++++... .++++.++..+.+.+.+...++.+++............. ........ ........+.+.++..++||
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~di 79 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGE-QEVVRVIVLDNPLDYRRAARAIRLSGPDV 79 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCc-ccceeeeecCCchhHHHHHHHHhhcCCCE
Confidence 6899988776 567889999999999998889888876543221111000 00111111 11223466788899999999
Q ss_pred EEcCCCcCC--CCchhhhh----cCCCceEEecccc-CCCCCC--Cc---ccEEEecCccCCc-Cc-----cCCCcccee
Q 002431 616 LINLNGYTK--GARNEIFA----MQPAPIQVSYMGF-PGTTGA--SY---IDYLVTDEFVSPL-RY-----AHIYSEKLV 677 (922)
Q Consensus 616 l~~~~~~~~--~~~~~~~~----~~~apvq~~~~g~-~~t~g~--~~---~d~~~~d~~~~~~-~~-----~~~~~e~~~ 677 (922)
+|-...+.. +.....+. .+..|+.++..+. +..... .. .-+..+|.+++++ .. ...+.+++.
T Consensus 80 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~ 159 (366)
T cd03822 80 VVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALLLRAYPEKIA 159 (366)
T ss_pred EEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcCCCcEE
Confidence 975442111 11111111 1456887776554 211110 00 0112346666663 21 111234555
Q ss_pred ecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhH
Q 002431 678 HVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGE 755 (922)
Q Consensus 678 ~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~ 755 (922)
.+|+....... .+ ...+.+.+.+.+.+++++++++ .|+.+.+++++.++.++.|+.+|+++|.++...
T Consensus 160 ~i~~~~~~~~~--------~~--~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~ 229 (366)
T cd03822 160 VIPHGVPDPPA--------EP--PESLKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDL 229 (366)
T ss_pred EeCCCCcCccc--------CC--chhhHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccch
Confidence 56543321110 00 1111233344556677777754 599999999999999999999999999875423
Q ss_pred HHHHH----HHHHcCCCCCceEEcCC-CCcHHHHHhccCCcEEecCCCCC--C-hhHHHHHHHcCCCeeeecCCcchhhh
Q 002431 756 MRLRA----YAVAQGVQPDQIIFTDV-AMKQEHIRRSSLADLFLDTPLCN--A-HTTGTDILWAGLPMITLPLEKMATRV 827 (922)
Q Consensus 756 ~~l~~----~~~~~g~~~~rv~f~~~-~~~~~~~~~~~~~dv~l~~~~~~--g-~~t~~eal~~g~Pvv~~~~~~~~~r~ 827 (922)
..... .+++.|+ .++|.|.|. ++.++...+|+.+|+++.|+.++ | |.+++|||++|+|||+.+... ...+
T Consensus 230 ~~~~~~~~~~i~~~~~-~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i 307 (366)
T cd03822 230 ERYRGEAYALAERLGL-ADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEV 307 (366)
T ss_pred hhhhhhhHhHHHhcCC-CCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hhee
Confidence 22222 3788899 589999987 89999999999999999999888 8 999999999999999765432 1111
Q ss_pred HHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 828 AGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 828 ~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
. . +-.+ ++. .|.+++++.+.++.+|++.+.+++++.++... . |+++.+++++.++|+
T Consensus 308 ~-----~-~~~g-~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~-~s~~~~~~~~~~~~~ 366 (366)
T cd03822 308 L-----D-GGTG-LLVPPGDPAALAEAIRRLLADPELAQALRARAREYAR--A-MSWERVAERYLRLLA 366 (366)
T ss_pred e-----e-CCCc-EEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHh--h-CCHHHHHHHHHHHhC
Confidence 1 1 2333 443 57999999999999999999999999988763 3 999999999998873
|
ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=166.66 Aligned_cols=268 Identities=21% Similarity=0.241 Sum_probs=187.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC---CC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 42 IYYQLHDYDMCIARNEEALRLE---PR-------FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111 (922)
Q Consensus 42 ~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 111 (922)
+++..++...|-......++.+ |. +..-...+|.||++.|-+.+|.+.++..++..|. ++.+..++.+|
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY 266 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVY 266 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHH
Confidence 4555666666665554444332 11 2233356778888888888888888887776654 67777778888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 191 (922)
Q Consensus 112 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 191 (922)
.+..+...|+..+.+.++..|.++..+...+.++...++.++|.++|+.+++.+|.+.++.-.++..|+-.++.+-|+.+
T Consensus 267 ~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence 88888888888888888777877777777788888888888888888888887777777777777777777777778888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CC--hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCC
Q 002431 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR--PN--AIAFGNLASTYYERGQADMAILYYKQAIGCDP 267 (922)
Q Consensus 192 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 267 (922)
|+++++..-.+++.+.++|.+....++++-++..|++++... |+ ..+|++++.+....|++..|...|+-++..++
T Consensus 347 YRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 347 YRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 888777777777777777777777777777777777777642 22 55666666666666666666666666666666
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhH
Q 002431 268 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310 (922)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 310 (922)
++.+++.+++..-.+.|+.++|..+++.+....|+-.+..+++
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 6666666666666666666666666666666666554444443
|
|
| >PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-18 Score=186.77 Aligned_cols=181 Identities=13% Similarity=0.125 Sum_probs=143.7
Q ss_pred CcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhh--------HHHHHHHHHHcCCCCCce
Q 002431 703 KRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG--------EMRLRAYAVAQGVQPDQI 772 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--------~~~l~~~~~~~g~~~~rv 772 (922)
.|+.+|++++..+++.++|+ .|+.+.++++|.++.++.|+.+|+|+|+|+.. .+.+++.+.++| ++|
T Consensus 183 ~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~---~~v 259 (380)
T PRK15484 183 LRQQLNISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG---DRC 259 (380)
T ss_pred HHHHhCCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC---CcE
Confidence 57788998777788877775 59999999999999999999999999987531 124455555544 579
Q ss_pred EEcCCCCcHHHHHhccCCcEEecCCCC-CC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcc-c--cCCHH
Q 002431 773 IFTDVAMKQEHIRRSSLADLFLDTPLC-NA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM-I--VNSMK 847 (922)
Q Consensus 773 ~f~~~~~~~~~~~~~~~~dv~l~~~~~-~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~-i--~~~~~ 847 (922)
+|+|.++..+...+|+.+|+++.|+.+ +| |++++|||+||+|||+.....+.+-+.. |..+ + + ..|++
T Consensus 260 ~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~------~~~G-~~l~~~~d~~ 332 (380)
T PRK15484 260 IMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGITEFVLE------GITG-YHLAEPMTSD 332 (380)
T ss_pred EEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCCcHhhccc------CCce-EEEeCCCCHH
Confidence 999999999999999999999999875 78 9999999999999997654433332211 4444 3 3 35899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 002431 848 EYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKM 896 (922)
Q Consensus 848 ~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 896 (922)
++++.+.++++|++. .+++++.++.. ...|+++.+++++++.|+..
T Consensus 333 ~la~~I~~ll~d~~~-~~~~~~ar~~~--~~~fsw~~~a~~~~~~l~~~ 378 (380)
T PRK15484 333 SIISDINRTLADPEL-TQIAEQAKDFV--FSKYSWEGVTQRFEEQIHNW 378 (380)
T ss_pred HHHHHHHHHHcCHHH-HHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHh
Confidence 999999999999985 67888888765 34699999999999999654
|
|
| >TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-19 Score=198.43 Aligned_cols=177 Identities=11% Similarity=0.064 Sum_probs=135.4
Q ss_pred CCCCCCCcEEEEecCCC--CCCCHHHHHHHHHH--HhhCCCeEEEEecCChhh----------HHHHHHHHHHcCCCCCc
Q 002431 706 DYGLPEDKFIFACFNQL--YKMDPEIFNTWCNI--LRRVPNSALWLLRFPAAG----------EMRLRAYAVAQGVQPDQ 771 (922)
Q Consensus 706 ~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~i--l~~~p~~~l~~~~~~~~~----------~~~l~~~~~~~g~~~~r 771 (922)
+++++++.+++++++|+ .|+.+.++++++++ ++..++.. +++|+|+.. .+.+...+.+.|+ .++
T Consensus 241 ~~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l-~~~ 318 (439)
T TIGR02472 241 PFLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDL-YGK 318 (439)
T ss_pred hhccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCC-Cce
Confidence 45566666788888876 59999999999864 23334433 356776531 1234556788899 599
Q ss_pred eEEcCCCCcHHHHHhccCC----cEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--C
Q 002431 772 IIFTDVAMKQEHIRRSSLA----DLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--N 844 (922)
Q Consensus 772 v~f~~~~~~~~~~~~~~~~----dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~ 844 (922)
|+|+|.++..+...+|+.+ |+||.||.++| |++++|||+||+|||+........-+. -|.++ +++ .
T Consensus 319 V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~------~~~~G-~lv~~~ 391 (439)
T TIGR02472 319 VAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDIIA------NCRNG-LLVDVL 391 (439)
T ss_pred EEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHhc------CCCcE-EEeCCC
Confidence 9999999888998888876 99999999999 999999999999999655433332221 13444 443 5
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 845 SMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 845 ~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
|++++++.+.++.+|++.+++++++.+++. ...||++.+++++++..
T Consensus 392 d~~~la~~i~~ll~~~~~~~~~~~~a~~~~--~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 392 DLEAIASALEDALSDSSQWQLWSRNGIEGV--RRHYSWDAHVEKYLRIL 438 (439)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHh
Confidence 899999999999999999999999999876 44699999999988764
|
This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase. |
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-18 Score=194.55 Aligned_cols=189 Identities=12% Similarity=0.012 Sum_probs=141.6
Q ss_pred CCcCCCCCCC---CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhh--HHHHHHHHHHcCCCCCceEE
Q 002431 702 PKRSDYGLPE---DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG--EMRLRAYAVAQGVQPDQIIF 774 (922)
Q Consensus 702 ~~r~~~~l~~---~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--~~~l~~~~~~~g~~~~rv~f 774 (922)
.+|+++||+. +.++||+++|+ .|+.+.+++++.+++. ++.+|+|+|+|+.. ...++..+.++++ .++|.|
T Consensus 765 aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~--~dvqLVIvGdGp~~~~e~eL~~La~~l~l-~drV~F 841 (977)
T PLN02939 765 ALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAE--LGGQFVLLGSSPVPHIQREFEGIADQFQS-NNNIRL 841 (977)
T ss_pred HHHHHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhh--cCCEEEEEeCCCcHHHHHHHHHHHHHcCC-CCeEEE
Confidence 3788999984 46899999987 4999999999998875 57899999998642 3678888899999 589999
Q ss_pred cCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHH---HHHHhcCCCCcccc--CCHHH
Q 002431 775 TDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG---SLCLATGLGEEMIV--NSMKE 848 (922)
Q Consensus 775 ~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~---~~~~~~g~~~~~i~--~~~~~ 848 (922)
+|..+......+|+.+|+||.||.+++ |+|.+|||++|+|+|+........-|.. ..+..-|.++ ++. .|+++
T Consensus 842 lG~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NG-fLf~~~D~ea 920 (977)
T PLN02939 842 ILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNG-FTFLTPDEQG 920 (977)
T ss_pred EeccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCce-EEecCCCHHH
Confidence 998766555678999999999999999 9999999999988884322211111100 0000002223 332 47888
Q ss_pred HHHHHHHHh----cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 002431 849 YEERAVSLA----LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899 (922)
Q Consensus 849 ~~~~~~~l~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 899 (922)
++.++.++. .|++.+.+++++... ..|+++.++++++++|+.++.+
T Consensus 921 La~AL~rAL~~~~~dpe~~~~L~~~am~-----~dFSWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 921 LNSALERAFNYYKRKPEVWKQLVQKDMN-----IDFSWDSSASQYEELYQRAVAR 970 (977)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHh
Confidence 887777655 478988888875432 3499999999999999999865
|
|
| >cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=192.06 Aligned_cols=166 Identities=17% Similarity=0.164 Sum_probs=136.6
Q ss_pred EEEecCC--CCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcE
Q 002431 715 IFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADL 792 (922)
Q Consensus 715 ~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv 792 (922)
+++.+++ ..|+++.+++++.++.++.|+.+|+++|+|+. .+.++..+.++|+ .++|.|.|.++.++...+|+.+|+
T Consensus 190 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~l~~~~~~ad~ 267 (367)
T cd05844 190 RILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGPL-LAALEALARALGL-GGRVTFLGAQPHAEVRELMRRARI 267 (367)
T ss_pred EEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCchH-HHHHHHHHHHcCC-CCeEEECCCCCHHHHHHHHHhCCE
Confidence 4444443 56999999999999999999999999999876 6789999999999 589999999999999999999999
Q ss_pred EecCCC------CCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHH
Q 002431 793 FLDTPL------CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKL 863 (922)
Q Consensus 793 ~l~~~~------~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~ 863 (922)
++.|+. .+| |++++|||++|+|||+.+......-+. . |-.+ ++. .|++++++.+.++..|++.+
T Consensus 268 ~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~-----~-~~~g-~~~~~~d~~~l~~~i~~l~~~~~~~ 340 (367)
T cd05844 268 FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVE-----D-GETG-LLVPEGDVAALAAALGRLLADPDLR 340 (367)
T ss_pred EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhhee-----c-CCee-EEECCCCHHHHHHHHHHHHcCHHHH
Confidence 999975 466 999999999999999766544333221 1 2223 333 48999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCChHHHHHHHHH
Q 002431 864 QALTNKLKSVRLTCPLFDTARWVKNLER 891 (922)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 891 (922)
.+++.+.++.+ ...|+++.+++++++
T Consensus 341 ~~~~~~a~~~~--~~~~s~~~~~~~l~~ 366 (367)
T cd05844 341 ARMGAAGRRRV--EERFDLRRQTAKLEA 366 (367)
T ss_pred HHHHHHHHHHH--HHHCCHHHHHHHHhc
Confidence 99999988876 346999999998875
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center |
| >cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-18 Score=188.68 Aligned_cols=179 Identities=9% Similarity=0.039 Sum_probs=136.7
Q ss_pred CcCCCCCCCCcEEEEecCC---CCCCCHHHHHHHHHHHhhCCCeEEEEecCChh--------hHHHHHHHHHHcCC--CC
Q 002431 703 KRSDYGLPEDKFIFACFNQ---LYKMDPEIFNTWCNILRRVPNSALWLLRFPAA--------GEMRLRAYAVAQGV--QP 769 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~---~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~--------~~~~l~~~~~~~g~--~~ 769 (922)
.+...+++++.++++.++| ..|+.+.+++++.++.++.|+.+|+|+|++.. +....+...++.+. +.
T Consensus 201 ~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 280 (396)
T cd03818 201 LPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDL 280 (396)
T ss_pred ccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCc
Confidence 3444456666677777765 36999999999999999999999999996321 11122333344442 34
Q ss_pred CceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCH
Q 002431 770 DQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSM 846 (922)
Q Consensus 770 ~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~ 846 (922)
++|+|+|.++..+...+|+.+|+++.|+..+| |++++|||+||+|||+.+......-+.. |.++ +++ .|+
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~g~~e~i~~------~~~G-~lv~~~d~ 353 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAPVREVITD------GENG-LLVDFFDP 353 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCCCchhhccc------CCce-EEcCCCCH
Confidence 89999999999999999999999999987777 9999999999999997665444333321 4455 443 589
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 002431 847 KEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 890 (922)
Q Consensus 847 ~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 890 (922)
+++++++.++.+|++.+.+++++.++... ..|+++.+++++.
T Consensus 354 ~~la~~i~~ll~~~~~~~~l~~~ar~~~~--~~fs~~~~~~~~~ 395 (396)
T cd03818 354 DALAAAVIELLDDPARRARLRRAARRTAL--RYDLLSVCLPRQL 395 (396)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHH--HhccHHHHHHHHh
Confidence 99999999999999999999999999873 3699888877653
|
ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II). |
| >PLN02316 synthase/transferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=198.07 Aligned_cols=338 Identities=11% Similarity=-0.003 Sum_probs=212.4
Q ss_pred cccceeeeecCCCC----CChhHhhhhHHhhcCCCCCeEEEEEecCCCCC--hHHHHHHHh----------------c--
Q 002431 534 LRRLRVGYVSSDFG----NHPLSHLMGSVFGMHNKENVEVFCYALSPNDG--TEWRQRTQS----------------E-- 589 (922)
Q Consensus 534 ~~~~rig~~s~~~~----~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~--~~~~~~~~~----------------~-- 589 (922)
..+|||.+||+.+. .++.+.++..|-+.+.+.+.+|.++...-... .... .+.. .
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~ 663 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVK-DLHYQRSYSWGGTEIKVWFGKVE 663 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcc-cceEEEEeccCCEEEEEEEEEEC
Confidence 45699999998863 35677899999999988889999988653210 0000 0100 0
Q ss_pred cC--ceEECC-CC---------CH---------HHHHHHHHh--CCCeEEEcCCCcCCCCchhhhh-----------cCC
Q 002431 590 AE--HFVDVS-AM---------SS---------DMIAKLINE--DKIQILINLNGYTKGARNEIFA-----------MQP 635 (922)
Q Consensus 590 ~~--~~~~~~-~~---------~~---------~~~~~~i~~--~~~dil~~~~~~~~~~~~~~~~-----------~~~ 635 (922)
+. .+++-. ++ .| ..+.+.++. .++||+ |+|.....+.+ ...
T Consensus 664 GV~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDII-----HaHDW~talva~llk~~~~~~~~~~ 738 (1036)
T PLN02316 664 GLSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDII-----HCHDWSSAPVAWLFKDHYAHYGLSK 738 (1036)
T ss_pred CcEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEE-----EECCChHHHHHHHHHHhhhhhccCC
Confidence 00 111111 01 11 123455543 489999 77755332221 123
Q ss_pred CceEEeccccCCCCCCCccc--EEEecCccCCcCcc----------CCCccceeecCCccccCCCcccc-ccC---CCC-
Q 002431 636 APIQVSYMGFPGTTGASYID--YLVTDEFVSPLRYA----------HIYSEKLVHVPHCYFVNDYKQKN-MDV---LDP- 698 (922)
Q Consensus 636 apvq~~~~g~~~t~g~~~~d--~~~~d~~~~~~~~~----------~~~~e~~~~lp~~~~~~~~~~~~-~~~---~~~- 698 (922)
.|+..|..+.. .+...+- ...+|.+++.+... ....+++..+|++.-...+.+.. +.. +.+
T Consensus 739 ~p~V~TiHnl~--~~~n~lk~~l~~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~ 816 (1036)
T PLN02316 739 ARVVFTIHNLE--FGANHIGKAMAYADKATTVSPTYSREVSGNSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSE 816 (1036)
T ss_pred CCEEEEeCCcc--cchhHHHHHHHHCCEEEeCCHHHHHHHHhccCcccccCCEEEEECCccccccCCcccccccccCCch
Confidence 58888764421 1111110 11234444443320 11235677777654332211110 000 000
Q ss_pred --------CCCCCcCCCCCCC-CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhh--HHHHHHHHHHc
Q 002431 699 --------NCQPKRSDYGLPE-DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG--EMRLRAYAVAQ 765 (922)
Q Consensus 699 --------~~~~~r~~~~l~~-~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--~~~l~~~~~~~ 765 (922)
....+|+++||+. +.+++++++|+ .|+.+.+++++.++++ ++++|+|+|+||.. ...+++++.++
T Consensus 817 ~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVIvG~Gpd~~~e~~l~~La~~L 894 (1036)
T PLN02316 817 NVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVLLGSAPDPRIQNDFVNLANQL 894 (1036)
T ss_pred hhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCcEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 0112678899984 67899999987 4999999999999886 47899999988642 46788889988
Q ss_pred CCC-CCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCc---
Q 002431 766 GVQ-PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEE--- 840 (922)
Q Consensus 766 g~~-~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~--- 840 (922)
|+. +++|.|.|..+..--..+|+.+|+||.||.+++ |+|.+|||++|+|+|+ +++| |++|.
T Consensus 895 g~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVv-------s~vG-------GL~DtV~d 960 (1036)
T PLN02316 895 HSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVV-------RKTG-------GLFDTVFD 960 (1036)
T ss_pred CccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEE-------EcCC-------CcHhhccc
Confidence 873 579999886433322357999999999999999 9999999999988883 4444 44440
Q ss_pred -----------------ccc--CCHHHHHHHHHHHhcC-HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 002431 841 -----------------MIV--NSMKEYEERAVSLALD-RQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 897 (922)
Q Consensus 841 -----------------~i~--~~~~~~~~~~~~l~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 897 (922)
++. .|++++..++.+++.+ ++.+..+++..+..+ ...|+++++|++++++|+++.
T Consensus 961 ~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m--~~dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 961 VDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVM--EQDWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred cccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--HhhCCHHHHHHHHHHHHHHHh
Confidence 232 2688888888888776 355555666666655 446999999999999998864
|
|
| >cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-18 Score=187.88 Aligned_cols=319 Identities=14% Similarity=0.175 Sum_probs=205.5
Q ss_pred eeeeecCCCC-CChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEEC----------CCCCHHHHHH
Q 002431 538 RVGYVSSDFG-NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDV----------SAMSSDMIAK 606 (922)
Q Consensus 538 rig~~s~~~~-~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 606 (922)
||+++++.+. .+++...+..+.+.+.+.+++|.+++........ .. +.. ...+..+ .......+.+
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPF-YE-LDP-KIKVIDLGDKRDSKLLARFKKLRRLRK 77 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCc-cc-cCC-ccceeecccccccchhccccchHHHHH
Confidence 6889998888 7777788888999988778999998876543110 00 111 1111111 1123467889
Q ss_pred HHHhCCCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCCCCCccc-------EEEecCccCCcCccC-----CCcc
Q 002431 607 LINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYID-------YLVTDEFVSPLRYAH-----IYSE 674 (922)
Q Consensus 607 ~i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~~~d-------~~~~d~~~~~~~~~~-----~~~e 674 (922)
.++..++|++|...++. ..-+..+..+..|+.+...+.+......... +..+|.+++++.... ....
T Consensus 78 ~l~~~~~d~i~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~ 156 (348)
T cd03820 78 LLKNNKPDVVISFLTSL-LTFLASLGLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRALYYKKFNK 156 (348)
T ss_pred hhcccCCCEEEEcCchH-HHHHHHHhhccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHHhhccCCC
Confidence 99999999997555441 1111222222225544433322211111000 113344444444321 1222
Q ss_pred ceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCC--CCCCCHHHHHHHHHHHhhCCCeEEEEecCCh
Q 002431 675 KLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPA 752 (922)
Q Consensus 675 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~ 752 (922)
++..+|+..-. ....+ . .+.+.++|+++++ ..|+.+.++++|.++.+..|+.+|+++|.++
T Consensus 157 ~~~vi~~~~~~--------~~~~~----~-----~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~ 219 (348)
T cd03820 157 NVVVIPNPLPF--------PPEEP----S-----SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGP 219 (348)
T ss_pred CeEEecCCcCh--------hhccc----c-----CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 33333322110 00000 0 1233455555554 4699999999999998889999999999887
Q ss_pred hhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHH
Q 002431 753 AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSL 831 (922)
Q Consensus 753 ~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~ 831 (922)
. ...+++.+.+.|+ .++|.|.|. .++...+|+.+|+++.|+.++| |++++|||++|+|||+.+.......+
T Consensus 220 ~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~---- 291 (348)
T cd03820 220 E-REALEALIKELGL-EDRVILLGF--TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSEI---- 291 (348)
T ss_pred C-HHHHHHHHHHcCC-CCeEEEcCC--cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchHhh----
Confidence 6 7788888899999 589999998 6788888999999999998888 99999999999999986543222211
Q ss_pred HHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 002431 832 CLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 890 (922)
Q Consensus 832 ~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 890 (922)
..-|..+ ++. .|++++++.+.++..|++.+++++++.++... .|+++.++++++
T Consensus 292 -~~~~~~g-~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 347 (348)
T cd03820 292 -IEDGVNG-LLVPNGDVEALAEALLRLMEDEELRKRMGANARESAE---RFSIENIIKQWE 347 (348)
T ss_pred -hccCcce-EEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH---HhCHHHHHHHhc
Confidence 1113233 443 46799999999999999999999999876543 399999887764
|
AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran. |
| >PRK10307 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-18 Score=190.53 Aligned_cols=185 Identities=15% Similarity=0.136 Sum_probs=150.6
Q ss_pred CCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCC
Q 002431 702 PKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM 779 (922)
Q Consensus 702 ~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~ 779 (922)
..|+++|++++.++++.++++ .|+.+.+++++.++ +..|+.+|+|+|+|+. .+.+++.++++|++ +|.|+|.++
T Consensus 218 ~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l-~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~--~v~f~G~~~ 293 (412)
T PRK10307 218 ALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRL-RDRPDLIFVICGQGGG-KARLEKMAQCRGLP--NVHFLPLQP 293 (412)
T ss_pred HHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHh-ccCCCeEEEEECCChh-HHHHHHHHHHcCCC--ceEEeCCCC
Confidence 367789999888888888876 59999999999876 5578999999999986 78899999999993 799999999
Q ss_pred cHHHHHhccCCcEEecCCCCCC-----hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc-CCHHHHHHHH
Q 002431 780 KQEHIRRSSLADLFLDTPLCNA-----HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-NSMKEYEERA 853 (922)
Q Consensus 780 ~~~~~~~~~~~dv~l~~~~~~g-----~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~-~~~~~~~~~~ 853 (922)
.++...+|+.+||++.|+..++ ++.++|||+||+|||+...... .+ ..++. + .+.++. .|++++++++
T Consensus 294 ~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~-~~~i~--~-~G~~~~~~d~~~la~~i 367 (412)
T PRK10307 294 YDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--EL-GQLVE--G-IGVCVEPESVEALVAAI 367 (412)
T ss_pred HHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hH-HHHHh--C-CcEEeCCCCHHHHHHHH
Confidence 9999999999999999987665 4457899999999997643210 00 12232 3 331332 5899999999
Q ss_pred HHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 854 VSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 854 ~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
.+|.+|++.+.+++++.++.. ...||++.+++++++.|+++..
T Consensus 368 ~~l~~~~~~~~~~~~~a~~~~--~~~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 368 AALARQALLRPKLGTVAREYA--ERTLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred HHHHhCHHHHHHHHHHHHHHH--HHHcCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999876 3469999999999999998764
|
|
| >cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.3e-18 Score=187.61 Aligned_cols=331 Identities=15% Similarity=0.115 Sum_probs=210.6
Q ss_pred eeeeecCCC--CCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHh----ccC------ceEECCCCCHHHHH
Q 002431 538 RVGYVSSDF--GNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQS----EAE------HFVDVSAMSSDMIA 605 (922)
Q Consensus 538 rig~~s~~~--~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~----~~~------~~~~~~~~~~~~~~ 605 (922)
||.++++.+ ..++....+..+.+.+.+.+++|++++............... ... ..............
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLARYLFPPSLLAW 80 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccchhhhhhhhhhccChhHHHH
Confidence 588888888 345566788888888888889999988754432211110000 000 00000000112234
Q ss_pred HHHHhCCCeEEEcCCCcCCCCc--hhh----hh-cCCCceEEeccccCCCCC--CCcc----cE--------EEecCccC
Q 002431 606 KLINEDKIQILINLNGYTKGAR--NEI----FA-MQPAPIQVSYMGFPGTTG--ASYI----DY--------LVTDEFVS 664 (922)
Q Consensus 606 ~~i~~~~~dil~~~~~~~~~~~--~~~----~~-~~~apvq~~~~g~~~t~g--~~~~----d~--------~~~d~~~~ 664 (922)
......++||+ |+++.. ... .+ ..-.|+.++..|...... .... .. .-++.+..
T Consensus 81 ~~~~~~~~dii-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 155 (375)
T cd03821 81 LRLNIREADIV-----HVHGLWSYPSLAAARAARKYGIPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHA 155 (375)
T ss_pred HHHhCCCCCEE-----EEecccchHHHHHHHHHHHhCCCEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEE
Confidence 44556789999 444321 111 11 133577766544422111 0000 00 11222333
Q ss_pred CcCc------cCCCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHH
Q 002431 665 PLRY------AHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNI 736 (922)
Q Consensus 665 ~~~~------~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~i 736 (922)
.+.. .....+++..+|++.-.... ...+. ...|..++.+++.++++.++++ .|+.+.++++|.++
T Consensus 156 ~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l 228 (375)
T cd03821 156 TSEQEAAEIRRLGLKAPIAVIPNGVDIPPF------AALPS-RGRRRKFPILPDKRIILFLGRLHPKKGLDLLIEAFAKL 228 (375)
T ss_pred CCHHHHHHHHhhCCcccEEEcCCCcChhcc------Ccchh-hhhhhhccCCCCCcEEEEEeCcchhcCHHHHHHHHHHh
Confidence 3211 11233445555543221111 01111 1125667788888888888875 59999999999999
Q ss_pred HhhCCCeEEEEecCChhh-HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCC
Q 002431 737 LRRVPNSALWLLRFPAAG-EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP 814 (922)
Q Consensus 737 l~~~p~~~l~~~~~~~~~-~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~P 814 (922)
.++.|+.+|+++|.++.. ...++..+.+.|+ .++|.|.|.++.++...+|..+|+++.|+.++| |++++|||+||+|
T Consensus 229 ~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~P 307 (375)
T cd03821 229 AERFPDWHLVIAGPDEGGYRAELKQIAAALGL-EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTP 307 (375)
T ss_pred hhhcCCeEEEEECCCCcchHHHHHHHHHhcCc-cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCC
Confidence 998999999999976442 3445555688899 589999999999999999999999999998888 9999999999999
Q ss_pred eeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 002431 815 MITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 890 (922)
Q Consensus 815 vv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 890 (922)
||+.+......-+. . +..- ++..+++++++++.++.+|++.+..++++.++.. ...|+++.++++++
T Consensus 308 vI~~~~~~~~~~~~-----~-~~~~-~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~--~~~~s~~~~~~~~~ 374 (375)
T cd03821 308 VVTTDKVPWQELIE-----Y-GCGW-VVDDDVDALAAALRRALELPQRLKAMGENGRALV--EERFSWTAIAQQLL 374 (375)
T ss_pred EEEcCCCCHHHHhh-----c-CceE-EeCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhcCHHHHHHHhh
Confidence 99877655444333 1 2222 4456779999999999999999999999998875 34699999998875
|
Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7e-17 Score=149.79 Aligned_cols=205 Identities=26% Similarity=0.240 Sum_probs=166.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
..+...+|.-|++.|++..|.+.++++++.+|++..+|..++..|.+.|+.+.|.+.|+++++++|++.+++++.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45667788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALAL--NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 190 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 190 (922)
.+|++++|...|++++.. .+....++.++|.|..+.|+++.|...|+++++.+|+.+.....++...++.|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 888888888888888764 245667788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChh
Q 002431 191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI 237 (922)
Q Consensus 191 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 237 (922)
++++.....+...+.+...+.+-...|+-+.+-++=.++....|...
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 88888777777777777777788888888888877777777777743
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-15 Score=148.24 Aligned_cols=292 Identities=20% Similarity=0.221 Sum_probs=187.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHH
Q 002431 37 LLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN-----FADAWSNLASAY 111 (922)
Q Consensus 37 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~ 111 (922)
+..|.-+.-.++.++|++.|..+++.+|...++...+|+.|.+.|..+.|+.+-+..++ .|+ ...+...+|.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 44455555566677777777777777777777777777777777777777776665554 333 133566677777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHcCCHH
Q 002431 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF-----AIAWSNLAGLFMESGDLN 186 (922)
Q Consensus 112 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~ 186 (922)
+..|-++.|...|....+...--..+...+..+|....++++|++.-++..+..+.. +..+..++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 777777777777777666555555666677777777777777777777666665543 345666777777777777
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHHhHHHHHHHcCChHHHHHHHHHHHh
Q 002431 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIG 264 (922)
Q Consensus 187 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 264 (922)
.|...+.++++.+|+...+-..+|+++...|+++.|++.++.+++.+|+ +++...+..+|...|+.++....+.++.+
T Consensus 198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777776 66667777777777777777777777776
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHH---cCChhHHHHHHHHHH
Q 002431 265 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME---WNMLPAAASYYKATL 331 (922)
Q Consensus 265 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~ 331 (922)
..++.. +-..++.......-.+.|..++.+-+...|+--. .+.+...... .|...+....++.++
T Consensus 278 ~~~g~~-~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g-f~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 278 TNTGAD-AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG-FHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred ccCCcc-HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH-HHHHHHhhhccccccchhhhHHHHHHHH
Confidence 665543 4444555555555566666666666666665332 2223222221 233455555555544
|
|
| >PRK00654 glgA glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-18 Score=190.56 Aligned_cols=184 Identities=17% Similarity=0.094 Sum_probs=132.4
Q ss_pred CcCCCCCCC-CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChh-hHHHHHHHHHHcCCCCCceEE-cCC
Q 002431 703 KRSDYGLPE-DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQIIF-TDV 777 (922)
Q Consensus 703 ~r~~~~l~~-~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~rv~f-~~~ 777 (922)
+|+++|+++ +.++++.++|+ .|+.+.+++++.++++. +.+|+|+|+|+. ..+.+++.++++| ++|.| .|.
T Consensus 271 l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~l~~l~~~~~---~~v~~~~g~ 345 (466)
T PRK00654 271 LQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGTGDPELEEAFRALAARYP---GKVGVQIGY 345 (466)
T ss_pred HHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEecCcHHHHHHHHHHHHHCC---CcEEEEEeC
Confidence 578899985 67888888876 59999999999998764 689999998753 2567888888876 35654 565
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHH
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAV 854 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~ 854 (922)
+.+....+|+.+|+||.||.++| |++.+|||++|+|+|+........-+...--..-+-++ ++. .|++++++++.
T Consensus 346 -~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G-~lv~~~d~~~la~~i~ 423 (466)
T PRK00654 346 -DEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATG-FVFDDFNAEDLLRALR 423 (466)
T ss_pred -CHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCce-EEeCCCCHHHHHHHHH
Confidence 43444567999999999999999 99999999999999954322222211100000000222 332 48889988888
Q ss_pred HHhc---CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 855 SLAL---DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 855 ~l~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
+++. |++.+.+++++..+ ..|++++++++++++|++++.
T Consensus 424 ~~l~~~~~~~~~~~~~~~~~~-----~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 424 RALELYRQPPLWRALQRQAMA-----QDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred HHHHHhcCHHHHHHHHHHHhc-----cCCChHHHHHHHHHHHHHHhh
Confidence 7765 67767777665543 359999999999999998864
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=173.84 Aligned_cols=229 Identities=20% Similarity=0.307 Sum_probs=131.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.-
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHH
Q 002431 84 DLAIRYYLVAIELRPNFADAWSN-------LASAYMRKGRLNEAAQCCRQALALNP--LLVDAHSNLGNLMKAQGLVQEA 154 (922)
Q Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A 154 (922)
.+|..++.+-+...|.....-.. ..........+..-.+.|-.+....| .++++...||.+|...|+|++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 66666666665554432110000 00000011112233344444444444 4556666666666666666666
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002431 155 YSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 155 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (922)
+.+|+.++...|++...|+.||..+....+.++|+..|.+++++.|....+++++|..+..+|.|++|.++|-.++.+
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666666666666666666666666666666666666666666666655554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-16 Score=166.95 Aligned_cols=231 Identities=20% Similarity=0.128 Sum_probs=124.3
Q ss_pred CCHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 47 HDYDMCIARNEEALRLEP----RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122 (922)
Q Consensus 47 g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 122 (922)
+..+.++..+.+++...+ ..+..++.+|.+|...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345555566656654322 1245566666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002431 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202 (922)
Q Consensus 123 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 202 (922)
.|+++++++|++..++..+|.++...|++++|++.++++++.+|+++... ....+....+++++|+..+.+.....+..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 66666666666666666666666666666666666666666666554211 11112233455666666665544332211
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH-------hhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHHH
Q 002431 203 PDAYLNLGNVYKALGMPQEAIMCYQRAV-------QTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDP-RFLEAY 273 (922)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~ 273 (922)
.+. .+......|+..++ ..++.+. +..|. ..+|+.+|.++...|++++|+.+|++++..+| ++.+..
T Consensus 199 --~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 199 --QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred --ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 111 23333344444332 1222222 22222 45666777777777777777777777776664 555555
Q ss_pred HHHHHHHHH
Q 002431 274 NNLGNALKD 282 (922)
Q Consensus 274 ~~l~~~~~~ 282 (922)
+.+......
T Consensus 275 ~~~~e~~~~ 283 (296)
T PRK11189 275 YALLELALL 283 (296)
T ss_pred HHHHHHHHH
Confidence 544444433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.8e-17 Score=168.89 Aligned_cols=229 Identities=18% Similarity=0.129 Sum_probs=164.1
Q ss_pred CChHHHHHHHHHHHhhC---CC--hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 217 GMPQEAIMCYQRAVQTR---PN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 291 (922)
Q Consensus 217 g~~~~A~~~~~~~~~~~---p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 291 (922)
+..+.++..+.+++... |. ...++.+|.++...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566777777777532 22 56677788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 002431 292 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371 (922)
Q Consensus 292 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 371 (922)
.|+++++++|++..++..+|.++...|++++|+..|+++++.+|+++... ....+....+++++|+..+.+.....+..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 88888888888888888888888888888888888888888888776321 11223345678888888887766543222
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH-------hhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCHHHH
Q 002431 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAI-------TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP-DFPEAT 443 (922)
Q Consensus 372 ~~~~~~l~~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 443 (922)
.+. .+.+...+|+..++ ..++.+. ++.|...++|+.+|.++.+.|++++|+.+|+++++.+| ++.+..
T Consensus 199 --~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 199 --QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred --ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 121 34555556665443 2333333 45566778999999999999999999999999999986 666666
Q ss_pred HHHHHhh
Q 002431 444 CNLLHTL 450 (922)
Q Consensus 444 ~~l~~~~ 450 (922)
+.++...
T Consensus 275 ~~~~e~~ 281 (296)
T PRK11189 275 YALLELA 281 (296)
T ss_pred HHHHHHH
Confidence 6555443
|
|
| >TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.5e-18 Score=187.19 Aligned_cols=183 Identities=14% Similarity=0.142 Sum_probs=143.8
Q ss_pred CcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhh---HHHHHHHHHHcCCCCCceEEc-C
Q 002431 703 KRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG---EMRLRAYAVAQGVQPDQIIFT-D 776 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~---~~~l~~~~~~~g~~~~rv~f~-~ 776 (922)
.+.++|++++.++++.++|+ .|+.+.+++++.++. ++.+|+++|+|+.. .+.+++.+..++...++|+|. |
T Consensus 191 ~~~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 267 (388)
T TIGR02149 191 VLDRYGIDRSRPYILFVGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINK 267 (388)
T ss_pred HHHHhCCCCCceEEEEEcccccccCHHHHHHHHHHHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecC
Confidence 67788998888888888876 499999999998874 46778887765432 356777777777754667765 6
Q ss_pred CCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCH------H
Q 002431 777 VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSM------K 847 (922)
Q Consensus 777 ~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~------~ 847 (922)
.++..+...+|+.+||+|.|+.++| |++++|||++|+|||+.+......-+. -|..+ ++. .|. +
T Consensus 268 ~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~------~~~~G-~~~~~~~~~~~~~~~ 340 (388)
T TIGR02149 268 MLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGGIPEVVV------DGETG-FLVPPDNSDADGFQA 340 (388)
T ss_pred CCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCCHHHHhh------CCCce-EEcCCCCCcccchHH
Confidence 7889999999999999999998888 999999999999999765443332221 13334 333 345 7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 002431 848 EYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 897 (922)
Q Consensus 848 ~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 897 (922)
++++.+.++..|++.+++++++.++.. ...|+++.+++++.+.|++++
T Consensus 341 ~l~~~i~~l~~~~~~~~~~~~~a~~~~--~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 341 ELAKAINILLADPELAKKMGIAGRKRA--EEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999999988865 335999999999999998763
|
This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor. |
| >cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-18 Score=191.16 Aligned_cols=338 Identities=14% Similarity=0.162 Sum_probs=221.7
Q ss_pred eeeeecCCCCCC--hhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCc---eEECC-----CCCHHHHHHH
Q 002431 538 RVGYVSSDFGNH--PLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEH---FVDVS-----AMSSDMIAKL 607 (922)
Q Consensus 538 rig~~s~~~~~h--~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~ 607 (922)
||.+++..+..+ +...++..+.+.+.+.+++|.+++................... +.... ......+.+.
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 577888776554 5567888999999888899999887654332111100000000 00000 0113457788
Q ss_pred HHhCCCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCCCCC-------------cccEEEecCccCCcCcc-----
Q 002431 608 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGAS-------------YIDYLVTDEFVSPLRYA----- 669 (922)
Q Consensus 608 i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~-------------~~d~~~~d~~~~~~~~~----- 669 (922)
++..++||++....+...........+..|+.+...+........ ..-+..+|.+++++...
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~ 160 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREELR 160 (374)
T ss_pred hhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHH
Confidence 888999999655555433322122234467777665543221100 00011334455454431
Q ss_pred CCCc---cceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeE
Q 002431 670 HIYS---EKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSA 744 (922)
Q Consensus 670 ~~~~---e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~ 744 (922)
..+. .++..+|+...... ..+.....+...+.+.+.++++.+++. .|+.+.++++|..+.+..|+.+
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~ 232 (374)
T cd03801 161 ELGGVPPEKITVIPNGVDTER--------FRPAPRAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVR 232 (374)
T ss_pred hcCCCCCCcEEEecCcccccc--------cCccchHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeE
Confidence 1121 24444443221110 100001122334445566777777764 6999999999999999889999
Q ss_pred EEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcc
Q 002431 745 LWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKM 823 (922)
Q Consensus 745 l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~ 823 (922)
|+++|.++. ...++..+.+.+. .++|.|.|.++.++...+++.+|+++.|+.++| |++++|||++|+|||+.....+
T Consensus 233 l~i~G~~~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~ 310 (374)
T cd03801 233 LVIVGDGPL-REELEALAAELGL-GDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGGI 310 (374)
T ss_pred EEEEeCcHH-HHHHHHHHHHhCC-CcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCCh
Confidence 999997765 7788888888899 589999999999999999999999999988877 9999999999999998886555
Q ss_pred hhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 824 ATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 824 ~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
...+.. |-.. ++. .|++++++.+.++..|++.+.++++..++.. ...|+++.+++++.+.|+
T Consensus 311 ~~~~~~------~~~g-~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 374 (374)
T cd03801 311 PEVVED------GETG-LLVPPGDPEALAEAILRLLDDPELRRRLGEAARERV--AERFSWDRVAARTEEVYY 374 (374)
T ss_pred hHHhcC------Ccce-EEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHhhC
Confidence 444331 2333 343 3479999999999999999999999988655 345999999999998873
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. |
| >cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.4e-18 Score=186.36 Aligned_cols=309 Identities=16% Similarity=0.138 Sum_probs=200.8
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCCHHHHHHHHHhCCCeEE
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQIL 616 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dil 616 (922)
|||.+++.....++++.....+.+.+.+.+.||.+++.... .+.+.++..++||+
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~-------------------------~~~~~~~~~~~dii 55 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK-------------------------ALISKIEIINADIV 55 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc-------------------------hhhhChhcccCCEE
Confidence 68899987766677788888888888888889988885422 44556677888888
Q ss_pred EcCCCcCCCCchhhhhc--CCCceEEecccc-CCCCCC----------------------CcccE-------------EE
Q 002431 617 INLNGYTKGARNEIFAM--QPAPIQVSYMGF-PGTTGA----------------------SYIDY-------------LV 658 (922)
Q Consensus 617 ~~~~~~~~~~~~~~~~~--~~apvq~~~~g~-~~t~g~----------------------~~~d~-------------~~ 658 (922)
+-...+........+.. +..|+.++..+. +.+.+. +.+++ ..
T Consensus 56 h~~~~~~~~~~~~~~~~~~~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (365)
T cd03825 56 HLHWIHGGFLSIEDLSKLLDRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWADL 135 (365)
T ss_pred EEEccccCccCHHHHHHHHcCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhccC
Confidence 43222222222212211 245777664332 111110 00000 01
Q ss_pred ecCccCCcCccCCC--------ccceeecCCccccCCCccccccCCCC-CCCCCcCCCCCCCCcEE--EEecCCC--CCC
Q 002431 659 TDEFVSPLRYAHIY--------SEKLVHVPHCYFVNDYKQKNMDVLDP-NCQPKRSDYGLPEDKFI--FACFNQL--YKM 725 (922)
Q Consensus 659 ~d~~~~~~~~~~~~--------~e~~~~lp~~~~~~~~~~~~~~~~~~-~~~~~r~~~~l~~~~~~--~~~~~~~--~K~ 725 (922)
++.+++++.....+ ..++..+|++.- .....+ .....+..++++++..+ |++.... .|+
T Consensus 136 ~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~K~ 207 (365)
T cd03825 136 NLTIVAPSRWLADCARSSSLFKGIPIEVIPNGID--------TTIFRPRDKREARKRLGLPADKKIILFGAVGGTDPRKG 207 (365)
T ss_pred CcEEEehhHHHHHHHHhccccCCCceEEeCCCCc--------ccccCCCcHHHHHHHhCCCCCCeEEEEEecCCCccccC
Confidence 12233333321111 123333333211 111111 11225667788776544 4455444 799
Q ss_pred CHHHHHHHHHHHhh-CCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCC-cHHHHHhccCCcEEecCCCCCC-h
Q 002431 726 DPEIFNTWCNILRR-VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM-KQEHIRRSSLADLFLDTPLCNA-H 802 (922)
Q Consensus 726 ~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~-~~~~~~~~~~~dv~l~~~~~~g-~ 802 (922)
.+.++++|..+.++ .|+.+++++|.++. ... .++ .++|.|+|.++ .++...+|+.+|+++.|+.++| |
T Consensus 208 ~~~ll~a~~~l~~~~~~~~~~~i~G~~~~-~~~-------~~~-~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g 278 (365)
T cd03825 208 FDELIEALKRLAERWKDDIELVVFGASDP-EIP-------PDL-PFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFP 278 (365)
T ss_pred HHHHHHHHHHhhhccCCCeEEEEeCCCch-hhh-------ccC-CCceEecCCcCCHHHHHHHHHhCCEEEecccccccc
Confidence 99999999987665 68899999998754 211 156 47899999988 6778888999999999998888 9
Q ss_pred hHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCC
Q 002431 803 TTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLF 880 (922)
Q Consensus 803 ~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 880 (922)
++++|||++|+|||+.....+..-+.. +.++ ++. .|.+++++++.++..|++.+.+++++.++.. ...|
T Consensus 279 ~~~~Eam~~g~PvI~~~~~~~~e~~~~------~~~g-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~ 349 (365)
T cd03825 279 NTAIEALACGTPVVAFDVGGIPDIVDH------GVTG-YLAKPGDPEDLAEGIEWLLADPDEREELGEAARELA--ENEF 349 (365)
T ss_pred HHHHHHHhcCCCEEEecCCCChhheeC------CCce-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhc
Confidence 999999999999997765544443331 2234 443 3789999999999999999999999998876 3469
Q ss_pred ChHHHHHHHHHHHHHH
Q 002431 881 DTARWVKNLERSYFKM 896 (922)
Q Consensus 881 ~~~~~~~~~e~~y~~~ 896 (922)
+.+.++++++++|+++
T Consensus 350 s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 350 DSRVQAKRYLSLYEEL 365 (365)
T ss_pred CHHHHHHHHHHHHhhC
Confidence 9999999999999763
|
wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-16 Score=147.64 Aligned_cols=207 Identities=23% Similarity=0.179 Sum_probs=167.8
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
..+...++..|...|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++++.|++.+++++.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45667778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCChhHHHHHHHHHHhc--CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 002431 316 EWNMLPAAASYYKATLAV--TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 393 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 393 (922)
.+|++++|...|++++.. .+..+.++.++|.|..++|+.+.|.++|+++++.+|+.+.....++...++.|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 888888888888888765 355677788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 394 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
.+++.....+-..+.+...+++-...|+-+.|-++=.+.....|...+.
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 8888877777777777777778888888888888877777777876543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-15 Score=145.93 Aligned_cols=423 Identities=15% Similarity=0.097 Sum_probs=316.5
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
.+.+|.+++..|+|++|+..|+-+.+.+.-+.+.+..++.|++-+|.|.+|.....++ |+++-....+-....+.+
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhC
Confidence 3578999999999999999999998877677899999999999999999998876654 666666666666667777
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (922)
+-++-.. |.+.+. +..+-...++.+.+..-.|.+|+.+|++++.-+|+.......++.+|.+..-++-+.+.+.--
T Consensus 136 dEk~~~~-fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 136 DEKRILT-FHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred cHHHHHH-HHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 7554433 444333 223455677888888889999999999999999998888899999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHH
Q 002431 162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFG 240 (922)
Q Consensus 162 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 240 (922)
++..|+++.+.+..+...++.=+-..|..-.+...... ...+.+-..+-.-+.-..+-+.|++.+-.+++.-| ++..
T Consensus 212 L~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP--EARl 289 (557)
T KOG3785|consen 212 LRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP--EARL 289 (557)
T ss_pred HHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhCh--Hhhh
Confidence 99999999999988888877655555555555443322 12222211111111112344667777766665544 5677
Q ss_pred hHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhhCC------CChHHHHhHH
Q 002431 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQC---LSLQP------SHPQALTNLG 311 (922)
Q Consensus 241 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---l~~~p------~~~~~~~~la 311 (922)
+++..|.++++..+|..+.+. .+|..+.-|...|.+....|+-....+.++-+ +++-. +...-...++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred hheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 888899999999999887764 68888888888898888888765544444433 22211 2223455677
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCC-CCHHHHHHHHHHHHHhCCHHH
Q 002431 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP-LAADGLVNRGNTYKEIGRVTD 390 (922)
Q Consensus 312 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 390 (922)
.+++-..++++.+.++........++....++++.+++..|++.+|.++|-+.-...- +.......++.||...|+.+.
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 7788888999999999988888888888899999999999999999999987765442 334455678999999999999
Q ss_pred HHHHHHHHHhhCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 391 AIQDYIRAITIRPTM-AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 391 A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
|-..+-+.- .|.+ -..+..++..+.+.+++--|.+.|...-.++|.+
T Consensus 447 AW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 447 AWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 877664421 2322 3345667888999999999999999988888875
|
|
| >cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-18 Score=187.41 Aligned_cols=331 Identities=15% Similarity=0.099 Sum_probs=199.6
Q ss_pred eeeeecCCCCCC-hhHhhhhHHhhcCCCC--CeEEEEEecCCCCCh-HH----HHHHHhcc---CceEEC--C-------
Q 002431 538 RVGYVSSDFGNH-PLSHLMGSVFGMHNKE--NVEVFCYALSPNDGT-EW----RQRTQSEA---EHFVDV--S------- 597 (922)
Q Consensus 538 rig~~s~~~~~h-~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~-~~----~~~~~~~~---~~~~~~--~------- 597 (922)
-|||+=++.+.+ +..+++......+.+. +.+|.+|+....... .. .+.+.... ..++.+ .
T Consensus 2 ~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
T cd03806 2 TVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEAS 81 (419)
T ss_pred eEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccc
Confidence 378999999888 5557766666665554 689999987654321 11 11121110 011111 1
Q ss_pred CCC-----------HHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhc-CCCceEEeccccCC---------CCCC-----
Q 002431 598 AMS-----------SDMIAKLINEDKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPG---------TTGA----- 651 (922)
Q Consensus 598 ~~~-----------~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~-~~apvq~~~~g~~~---------t~g~----- 651 (922)
.+. .....+.+...++||+|+..|+..+ .++... ..+|+ +.+..+|. .+|.
T Consensus 82 ~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~--~~~~~~~~~~~~-i~y~h~P~~~~d~l~~~~~~~~~~~~ 158 (419)
T cd03806 82 TYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFT--YPLVRLLGGCPV-GAYVHYPTISTDMLQKVRSREASYNN 158 (419)
T ss_pred cCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccH--HHHHHHhcCCeE-EEEecCCcchHHHHHHHhhccccccC
Confidence 111 0112233335589999988776643 233332 13564 44444662 1111
Q ss_pred ----------Cc--------------ccEEEecCccCCcCccCCCccceeecC-CccccCCCccccccCCCCCCCCCcCC
Q 002431 652 ----------SY--------------IDYLVTDEFVSPLRYAHIYSEKLVHVP-HCYFVNDYKQKNMDVLDPNCQPKRSD 706 (922)
Q Consensus 652 ----------~~--------------~d~~~~d~~~~~~~~~~~~~e~~~~lp-~~~~~~~~~~~~~~~~~~~~~~~r~~ 706 (922)
+. .-+..+|.+++++........+.+..+ ...+.+++.+..... +...
T Consensus 159 ~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~~~--~~~~----- 231 (419)
T cd03806 159 SATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELL--KLPL----- 231 (419)
T ss_pred ccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHHhc--cccc-----
Confidence 00 112356777777765332222222222 223333332211111 1000
Q ss_pred CCCCCCcEEEEecCC--CCCCCHHHHHHHHHHHhhCCC-----eEEEEecCChh-----hHHHHHHHHHHcCCCCCceEE
Q 002431 707 YGLPEDKFIFACFNQ--LYKMDPEIFNTWCNILRRVPN-----SALWLLRFPAA-----GEMRLRAYAVAQGVQPDQIIF 774 (922)
Q Consensus 707 ~~l~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~-----~~l~~~~~~~~-----~~~~l~~~~~~~g~~~~rv~f 774 (922)
...++.++|++++| +.|++..++++|.++.++.|+ .+|+|+|+++. ..+.|++.++++|+ .++|.|
T Consensus 232 -~~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l-~~~V~f 309 (419)
T cd03806 232 -DEKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGL-EDKVEF 309 (419)
T ss_pred -ccccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCC-CCeEEE
Confidence 11233456666665 569999999999999988765 89999997632 24678889999999 589999
Q ss_pred cCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecC-CcchhhhHHHHHHhcCCCCccccCCHHHHHHH
Q 002431 775 TDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPL-EKMATRVAGSLCLATGLGEEMIVNSMKEYEER 852 (922)
Q Consensus 775 ~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~-~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~ 852 (922)
+|.++.++...+|+.+|++|.|+..+| |++++|||++|+|||+... .....-+.-. .-|-.+ +++.|+++++++
T Consensus 310 ~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~---~~g~~G-~l~~d~~~la~a 385 (419)
T cd03806 310 VVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPW---DGGPTG-FLASTAEEYAEA 385 (419)
T ss_pred ecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCchheeecc---CCCCce-EEeCCHHHHHHH
Confidence 999999999999999999999998888 9999999999999997652 2222212100 015556 667899999999
Q ss_pred HHHHhcCHH-HHHHHHHHHHhhcccCCCCChHHHHH
Q 002431 853 AVSLALDRQ-KLQALTNKLKSVRLTCPLFDTARWVK 887 (922)
Q Consensus 853 ~~~l~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 (922)
+.++.++++ .+..+++..+. . ...||.+.|.+
T Consensus 386 i~~ll~~~~~~~~~~~~~~~~-~--~~~fs~~~f~~ 418 (419)
T cd03806 386 IEKILSLSEEERLRIRRAARS-S--VKRFSDEEFER 418 (419)
T ss_pred HHHHHhCCHHHHHHHHHHHHH-H--HHhhCHHHhcc
Confidence 999998655 44444444443 3 34599888754
|
ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides. |
| >cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.1e-18 Score=184.67 Aligned_cols=314 Identities=13% Similarity=0.143 Sum_probs=200.9
Q ss_pred CCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCC---------CHHHHHHHHHhCCCeE
Q 002431 545 DFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM---------SSDMIAKLINEDKIQI 615 (922)
Q Consensus 545 ~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~di 615 (922)
.+..++++.++..+.+.+.+.+++|++++.... ..+.+...+..++.+... ....+.+.+++.++||
T Consensus 6 ~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~di 81 (355)
T cd03819 6 ALESGGVERGTLELARALVERGHRSLVASAGGR----LVAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIREEKVDI 81 (355)
T ss_pred hhccCcHHHHHHHHHHHHHHcCCEEEEEcCCCc----hHHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHHcCCCE
Confidence 344578888999999999999999998876432 233344444444433211 1245778889999999
Q ss_pred EEcCCCcCCCCchhhhhc--CCCceEEeccccCCCCCCCcccEEEecCccCCcCccCC--------CccceeecCCcccc
Q 002431 616 LINLNGYTKGARNEIFAM--QPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHI--------YSEKLVHVPHCYFV 685 (922)
Q Consensus 616 l~~~~~~~~~~~~~~~~~--~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~--------~~e~~~~lp~~~~~ 685 (922)
++..+.+.. -...+.. ...|+..++.|+....+.-..-+..+|.+++++..... ..+++..+|++.-.
T Consensus 82 i~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~ 159 (355)
T cd03819 82 VHARSRAPA--WSAYLAARRTRPPFVTTVHGFYSVNFRYNAIMARGDRVIAVSNFIADHIRENYGVDPDRIRVIPRGVDL 159 (355)
T ss_pred EEECCCchh--HHHHHHHHhcCCCEEEEeCCchhhHHHHHHHHHhcCEEEEeCHHHHHHHHHhcCCChhhEEEecCCccc
Confidence 954332211 1111111 23687777655532221000001123444444332111 12344444432211
Q ss_pred CCCccccccCCCCCCC------CCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhh---
Q 002431 686 NDYKQKNMDVLDPNCQ------PKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG--- 754 (922)
Q Consensus 686 ~~~~~~~~~~~~~~~~------~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--- 754 (922)
. ...+... ..|+.++++++.++++.++|+ .|+.+.+++++..+.+..|+.+|+++|.++..
T Consensus 160 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~ 231 (355)
T cd03819 160 D--------RFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFY 231 (355)
T ss_pred c--------ccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchH
Confidence 1 1111111 135667788888888888875 69999999999999888889999999987542
Q ss_pred HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCC-CCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHH
Q 002431 755 EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTP-LCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLC 832 (922)
Q Consensus 755 ~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~-~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~ 832 (922)
.+.+.+.+.+.++ .++|.|.|. ..+...+|..+|+++.|+ ..+| |++++|||++|+|||+.........+.
T Consensus 232 ~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~e~i~---- 304 (355)
T cd03819 232 YAELLELIKRLGL-QDRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGARETVR---- 304 (355)
T ss_pred HHHHHHHHHHcCC-cceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCcHHHHh----
Confidence 2445667788898 589999998 667888899999999998 6777 999999999999999876544433332
Q ss_pred HhcCCCCccc--cCCHHHHHHHHHHH-hcCHHHHHHHHHHHHhhcccCCCCChHH
Q 002431 833 LATGLGEEMI--VNSMKEYEERAVSL-ALDRQKLQALTNKLKSVRLTCPLFDTAR 884 (922)
Q Consensus 833 ~~~g~~~~~i--~~~~~~~~~~~~~l-~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (922)
. |..+ ++ .+|++++++.+..+ ..|++.+.+++++.++.. ...|+.+.
T Consensus 305 -~-~~~g-~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~--~~~f~~~~ 354 (355)
T cd03819 305 -P-GETG-LLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCV--ETLFSYDR 354 (355)
T ss_pred -C-CCce-EEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH--HHhhhhcc
Confidence 1 3334 33 35889999888544 458999999999998876 34566553
|
WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=158.83 Aligned_cols=264 Identities=20% Similarity=0.248 Sum_probs=161.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118 (922)
Q Consensus 39 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 118 (922)
.|..+++..+|.+|+..+..+++..|+++..|...+..+...|++++|.-..++.+.++|.........+.++...++..
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 34444444555555555555555555555555555555555555555555555555555444444444444444444444
Q ss_pred HHHHHHH---------------HHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 002431 119 EAAQCCR---------------QALALN---PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180 (922)
Q Consensus 119 ~A~~~~~---------------~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 180 (922)
+|.+.++ +.+..+ |....+-...+.++...|++++|...--..+++++.+..+++..+.+++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y 214 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY 214 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccc
Confidence 4443333 221111 2223344555666666777777777666667777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHH------------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----hhHHHhHH
Q 002431 181 ESGDLNRALQYYKEAVKLKPTFPD------------AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-----AIAFGNLA 243 (922)
Q Consensus 181 ~~g~~~~A~~~~~~~l~~~p~~~~------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~ 243 (922)
..++.+.|+..|++++.++|+... .+..-|+-..+.|++.+|.+.|..++.++|+ ...|.+.+
T Consensus 215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra 294 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA 294 (486)
T ss_pred cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence 777777777777777766665432 3445566667777777777777777777765 45566777
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002431 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302 (922)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 302 (922)
.+....|+..+|+...+.++++++....++...|.++...++|++|.+.|+++.+...+
T Consensus 295 ~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 295 LVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 77777777777777777777777777777777777777777777777777777766544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-15 Score=145.65 Aligned_cols=291 Identities=18% Similarity=0.186 Sum_probs=210.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR-----FAECYGNMANAWKE 79 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~ 79 (922)
.+..+.-..+.++|+..|-++++.+|...++.+.+|..+.+.|..+.|+.+-+..++. |+ ...+...+|.-|..
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHH
Confidence 3455666677788888888888888888888888888888888888888877666543 33 24567777888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHH
Q 002431 80 KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL-----VDAHSNLGNLMKAQGLVQEA 154 (922)
Q Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A 154 (922)
.|-++.|...|....+...--..+...+..+|....++++|++.-++..+..+.. ...+..++..+....+.+.|
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 8888888888887776554456677778888888888888888888877776543 23566777777777788888
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002431 155 YSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233 (922)
Q Consensus 155 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 233 (922)
...+.++++.+|++..+-..+|.++...|++++|++.++.+++.+|+. +++...+..+|...|+.++....+.++.+..
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 888888888888888888888888888888888888888888877775 4467777788888888888888888888877
Q ss_pred CChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 002431 234 PNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKD---VGRVDEAIQCYNQCL 297 (922)
Q Consensus 234 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al 297 (922)
+.......++..-....-.+.|..++.+-+...|..... +.+...... .|...+.+..+.+++
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf-~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGF-HRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHH-HHHHHhhhccccccchhhhHHHHHHHH
Confidence 777777777777777777777777777777777775433 333332222 233445555555544
|
|
| >cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=182.96 Aligned_cols=332 Identities=10% Similarity=0.086 Sum_probs=203.9
Q ss_pred eeeeecCCC---CCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC----------HHHH
Q 002431 538 RVGYVSSDF---GNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS----------SDMI 604 (922)
Q Consensus 538 rig~~s~~~---~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 604 (922)
||+++++++ ..++++.++..+.+.+.+.++||.+++........ . .......++.++... ...+
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~-~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK-E--TEYNGVRLIHIPAPEIGGLGTIIYDILAI 77 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc-c--cccCCceEEEcCCCCccchhhhHHHHHHH
Confidence 578886653 33566688999999999989999999875433221 0 111122333332110 1122
Q ss_pred HHHH-HhCCCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCC-CCCc-----------ccEEEecCccCCcCccCC
Q 002431 605 AKLI-NEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTT-GASY-----------IDYLVTDEFVSPLRYAHI 671 (922)
Q Consensus 605 ~~~i-~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~-g~~~-----------~d~~~~d~~~~~~~~~~~ 671 (922)
.+.+ ...++|+++....++ ..-..++..+..|+.++..|..-.. ..+. ..+..+|.+++++.....
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~ 156 (363)
T cd04955 78 LHALFVKRDIDHVHALGPAI-APFLPLLRLKGKKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRLIADSPGIKE 156 (363)
T ss_pred HHHHhccCCeEEEEecCccH-HHHHHHHHhcCCCEEEEccCcceeecccccchhHHHHHHHHHHHhhccEEEeCCHHHHH
Confidence 2222 256788885444333 1112233344578888765543111 0000 012345667766654322
Q ss_pred CccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEec
Q 002431 672 YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLR 749 (922)
Q Consensus 672 ~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~ 749 (922)
+..+.+..+. .+++++.... ...+ ....+..++++++.+ ++.++|+ .|+.+.++++++++.. +.+|+++|
T Consensus 157 ~~~~~~~~~~-~~i~ngv~~~--~~~~-~~~~~~~~~~~~~~~-i~~~G~~~~~Kg~~~li~a~~~l~~---~~~l~ivG 228 (363)
T cd04955 157 YLKEKYGRDS-TYIPYGADHV--VSSE-EDEILKKYGLEPGRY-YLLVGRIVPENNIDDLIEAFSKSNS---GKKLVIVG 228 (363)
T ss_pred HHHHhcCCCC-eeeCCCcChh--hcch-hhhhHHhcCCCCCcE-EEEEecccccCCHHHHHHHHHhhcc---CceEEEEc
Confidence 2212222222 2222222111 1111 122344556655433 3455554 6999999999987643 78999999
Q ss_pred CChhhHHHHHHHHH-HcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCC-CC-hhHHHHHHHcCCCeeeecCCcchhh
Q 002431 750 FPAAGEMRLRAYAV-AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLC-NA-HTTGTDILWAGLPMITLPLEKMATR 826 (922)
Q Consensus 750 ~~~~~~~~l~~~~~-~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~-~g-~~t~~eal~~g~Pvv~~~~~~~~~r 826 (922)
+++. ...+.+.+. +.++ .++|+|+|.++..+...++..+|+++.|+.. +| |++++|||++|+|||+........-
T Consensus 229 ~~~~-~~~~~~~~~~~~~~-~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e~ 306 (363)
T cd04955 229 NADH-NTPYGKLLKEKAAA-DPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNREV 306 (363)
T ss_pred CCCC-cchHHHHHHHHhCC-CCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCcccee
Confidence 8854 444555454 6777 5899999999999999999999999999877 88 9999999999999997654433322
Q ss_pred hHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 827 VAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 827 ~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
++ -.+ ++..+.+.+++.+.++.+|++.+..++++.++.. ...|+++.+++++++.|+
T Consensus 307 ~~--------~~g-~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~--~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 307 LG--------DKA-IYFKVGDDLASLLEELEADPEEVSAMAKAARERI--REKYTWEKIADQYEELYK 363 (363)
T ss_pred ec--------CCe-eEecCchHHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHhC
Confidence 22 123 3333344499999999999999999999988876 346999999999999884
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.9e-18 Score=185.85 Aligned_cols=325 Identities=14% Similarity=0.119 Sum_probs=206.2
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceE----ECCCC-CHHHHHHHHHhCC
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFV----DVSAM-SSDMIAKLINEDK 612 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~i~~~~ 612 (922)
||.+++..+... ...++..+++.+.+.+++|.+++..+.................. ....+ ....+.+.+++.+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 588999887544 55778888888888899999988654332211111111111000 00000 1244667777899
Q ss_pred CeEEEcCCCcCCCCchhhhhcC--CCceEEeccccCCCCCCC--cc--cEEEecCccCCcCccCC--------Cccceee
Q 002431 613 IQILINLNGYTKGARNEIFAMQ--PAPIQVSYMGFPGTTGAS--YI--DYLVTDEFVSPLRYAHI--------YSEKLVH 678 (922)
Q Consensus 613 ~dil~~~~~~~~~~~~~~~~~~--~apvq~~~~g~~~t~g~~--~~--d~~~~d~~~~~~~~~~~--------~~e~~~~ 678 (922)
+||++.-.++... ....+..+ ..|+.++..++....... .. -+..+|.+++++..... ..+++..
T Consensus 80 ~Dii~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~v 158 (355)
T cd03799 80 IDHIHAHFGTTPA-TVAMLASRLGGIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHV 158 (355)
T ss_pred CCEEEECCCCchH-HHHHHHHHhcCCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEE
Confidence 9999433322111 11222222 246666655443221111 11 11234555555543221 2233333
Q ss_pred cCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCC--CCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHH
Q 002431 679 VPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEM 756 (922)
Q Consensus 679 lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~ 756 (922)
+|++.- . ....+.. ...+.+.++++.+++ ..|+.+.+++++.++.+..|+.+|.++|.++. .+
T Consensus 159 i~~~~d------~--~~~~~~~------~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~-~~ 223 (355)
T cd03799 159 VHCGVD------L--ERFPPRP------PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPL-RD 223 (355)
T ss_pred EeCCcC------H--HHcCCcc------ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCcc-HH
Confidence 443211 1 0011110 112234455555655 46999999999999888889999999998876 77
Q ss_pred HHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCC------CC-hhHHHHHHHcCCCeeeecCCcchhhhHH
Q 002431 757 RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLC------NA-HTTGTDILWAGLPMITLPLEKMATRVAG 829 (922)
Q Consensus 757 ~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~------~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~ 829 (922)
.+++.+++.++ .++|.|.|.++.++...+|+.+|++|.|+.+ +| |++++|||++|+|||+.........+.
T Consensus 224 ~~~~~~~~~~~-~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~- 301 (355)
T cd03799 224 ELEALIAELGL-EDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVE- 301 (355)
T ss_pred HHHHHHHHcCC-CCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhh-
Confidence 88899999998 5899999999999999999999999999887 77 999999999999999766543333222
Q ss_pred HHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHH
Q 002431 830 SLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNL 889 (922)
Q Consensus 830 ~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (922)
. |-.+ ++. .|.+++++.+..+..|++.+..++++.++.+. ..|+++.+++++
T Consensus 302 ----~-~~~g-~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~--~~~s~~~~~~~l 355 (355)
T cd03799 302 ----D-GETG-LLVPPGDPEALADAIERLLDDPELRREMGEAGRARVE--EEFDIRKQAARL 355 (355)
T ss_pred ----C-CCce-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--HhcCHHHHhhcC
Confidence 1 3234 333 38999999999999999999999999988763 369988887653
|
amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor. |
| >cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=183.61 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=124.2
Q ss_pred CCcEEEEecCCC--CCCCHHHHHHHHHHHhh------CCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHH
Q 002431 711 EDKFIFACFNQL--YKMDPEIFNTWCNILRR------VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQE 782 (922)
Q Consensus 711 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~------~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~ 782 (922)
++.+++++++|+ .|+.+.+++++..+.+. .|+.+|+|+|+|+. ++.+++.++++|++ +.+.|.|+++.++
T Consensus 230 ~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~-~~~l~~~~~~~~l~-~~~~~~g~~~~~~ 307 (415)
T cd03816 230 ERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPL-KEKYLERIKELKLK-KVTIRTPWLSAED 307 (415)
T ss_pred CCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCcc-HHHHHHHHHHcCCC-cEEEEcCcCCHHH
Confidence 344566666764 59999999999988752 47899999999986 89999999999994 6666778899999
Q ss_pred HHHhccCCcEEecCCC---CCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 002431 783 HIRRSSLADLFLDTPL---CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL 858 (922)
Q Consensus 783 ~~~~~~~~dv~l~~~~---~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~ 858 (922)
...+|+.+||++.+++ .+| |++++|||+||+|||+........ ++.. |..+ +++.|++++++++..|.+
T Consensus 308 ~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~e-----iv~~-~~~G-~lv~d~~~la~~i~~ll~ 380 (415)
T cd03816 308 YPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDE-----LVKH-GENG-LVFGDSEELAEQLIDLLS 380 (415)
T ss_pred HHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHH-----HhcC-CCCE-EEECCHHHHHHHHHHHHh
Confidence 9999999999985432 245 999999999999999765443332 2222 5566 666799999999999999
Q ss_pred C---HHHHHHHHHHHHhhc
Q 002431 859 D---RQKLQALTNKLKSVR 874 (922)
Q Consensus 859 d---~~~~~~~~~~~~~~~ 874 (922)
| ++.+.+|+++.++..
T Consensus 381 ~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 381 NFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred cCCCHHHHHHHHHHHHHhh
Confidence 9 999999999988854
|
The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik. |
| >cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.5e-18 Score=186.86 Aligned_cols=329 Identities=11% Similarity=0.052 Sum_probs=207.2
Q ss_pred eeeeecCCCCC---ChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhcc--CceEEC---C--CCCHHHHHHH
Q 002431 538 RVGYVSSDFGN---HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEA--EHFVDV---S--AMSSDMIAKL 607 (922)
Q Consensus 538 rig~~s~~~~~---h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~--~~~~~~~~~~ 607 (922)
||++++..+.. +++++++..+++.+.+...+++++.................. ...... . ..........
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 57888877765 778899999999999877777666655432221111000000 000000 0 0112345556
Q ss_pred HHhCCCeEEEcCCCcCCCCchhhhhcCCCceEEecccc-----CCCCCCC---ccc------EEEecCccCCcCccC---
Q 002431 608 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGF-----PGTTGAS---YID------YLVTDEFVSPLRYAH--- 670 (922)
Q Consensus 608 i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~-----~~t~g~~---~~d------~~~~d~~~~~~~~~~--- 670 (922)
+...++||+ |++......+..+..|+.++.... +...... ... ...+|.++++++...
T Consensus 81 ~~~~~~Dii-----~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~ 155 (365)
T cd03809 81 LLLLGLDLL-----HSPHNTAPLLRLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATKRDL 155 (365)
T ss_pred hhhcCCCee-----eecccccCcccCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHHHH
Confidence 666899999 555544444334456777764322 2111110 000 013355555554311
Q ss_pred --CC---ccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCe
Q 002431 671 --IY---SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNS 743 (922)
Q Consensus 671 --~~---~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~ 743 (922)
.+ .+++..+|+..-... ..+.....+...+.+.+.++++.+++. .|+.+.+++++..+.+..|+.
T Consensus 156 ~~~~~~~~~~~~vi~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~ 227 (365)
T cd03809 156 LRYLGVPPDKIVVIPLGVDPRF--------RPPPAEAEVLRALYLLPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDP 227 (365)
T ss_pred HHHhCcCHHHEEeeccccCccc--------cCCCchHHHHHHhcCCCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCC
Confidence 11 234444443221110 000000001122344455666666655 599999999999999998889
Q ss_pred EEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCc
Q 002431 744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEK 822 (922)
Q Consensus 744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~ 822 (922)
+|+++|.++..........++.+. .++|.|.|.++..+...+++.+|+++.|+.++| |.+++|||++|+|||+.....
T Consensus 228 ~l~i~G~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~ 306 (365)
T cd03809 228 KLVIVGKRGWLNEELLARLRELGL-GDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISS 306 (365)
T ss_pred CEEEecCCccccHHHHHHHHHcCC-CCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCC
Confidence 999999765434445555567888 589999999999999999999999999988888 999999999999999876654
Q ss_pred chhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 002431 823 MATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 890 (922)
Q Consensus 823 ~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 890 (922)
+...++. .|. .+...|.+++++.+.++..|++.+..+++..++... .|+++.+++++.
T Consensus 307 ~~e~~~~-----~~~--~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~---~~sw~~~~~~~~ 364 (365)
T cd03809 307 LPEVAGD-----AAL--YFDPLDPEALAAAIERLLEDPALREELRERGLARAK---RFSWEKTARRTL 364 (365)
T ss_pred ccceecC-----cee--eeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---hCCHHHHHHHHh
Confidence 4443321 111 123468999999999999999999999999886543 499999998775
|
mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide. |
| >cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-17 Score=177.42 Aligned_cols=310 Identities=13% Similarity=0.042 Sum_probs=191.3
Q ss_pred ceeeeecCCC------CCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccC--ceEECCC--C----CHH
Q 002431 537 LRVGYVSSDF------GNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAE--HFVDVSA--M----SSD 602 (922)
Q Consensus 537 ~rig~~s~~~------~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~----~~~ 602 (922)
|||.++++.+ ..+++..++..+.+.+.+.++||++++....... ........ .+..... . ...
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTA---APLVPVVPEPLRLDAPGRDRAEAEALA 77 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcc---cceeeccCCCcccccchhhHhhHHHHH
Confidence 6889998876 5567778999999999988999999986543211 11111111 1110000 0 124
Q ss_pred HHHHHHHhCCCeEEEcCCCcCCCCchhh--hhcCCCceEEeccccCCCCCCC-cccEEEecCccCCcCccCCCc---cce
Q 002431 603 MIAKLINEDKIQILINLNGYTKGARNEI--FAMQPAPIQVSYMGFPGTTGAS-YIDYLVTDEFVSPLRYAHIYS---EKL 676 (922)
Q Consensus 603 ~~~~~i~~~~~dil~~~~~~~~~~~~~~--~~~~~apvq~~~~g~~~t~g~~-~~d~~~~d~~~~~~~~~~~~~---e~~ 676 (922)
.+.+.+++.++||+ |+++..... ...+..|+..+..+........ .......+.+++++....... .++
T Consensus 78 ~~~~~~~~~~~Div-----h~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 152 (335)
T cd03802 78 LAERALAAGDFDIV-----HNHSLHLPLPFARPLPVPVVTTLHGPPDPELLKLYYAARPDVPFVSISDAQRRPWPPLPWV 152 (335)
T ss_pred HHHHHHhcCCCCEE-----EecCcccchhhhcccCCCEEEEecCCCCcccchHHHhhCcCCeEEEecHHHHhhccccccc
Confidence 56788888999999 666554433 2223358877765554322111 001112233333333211111 223
Q ss_pred eecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecC--CCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhh
Q 002431 677 VHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFN--QLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG 754 (922)
Q Consensus 677 ~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~ 754 (922)
..+|++. +. ....+ . +.+..+++.++ ...|+.+.++++..+ ++.+|+++|.++.
T Consensus 153 ~vi~ngv------d~--~~~~~--~--------~~~~~~i~~~Gr~~~~Kg~~~li~~~~~-----~~~~l~i~G~~~~- 208 (335)
T cd03802 153 ATVHNGI------DL--DDYPF--R--------GPKGDYLLFLGRISPEKGPHLAIRAARR-----AGIPLKLAGPVSD- 208 (335)
T ss_pred EEecCCc------Ch--hhCCC--C--------CCCCCEEEEEEeeccccCHHHHHHHHHh-----cCCeEEEEeCCCC-
Confidence 3333322 11 11111 0 11122333334 457999999987543 4789999998865
Q ss_pred HHHHHHHHHHcC-CCCCceEEcCCCCcHHHHHhccCCcEEecCCCC-CC-hhHHHHHHHcCCCeeeecCCcchhhhHHHH
Q 002431 755 EMRLRAYAVAQG-VQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLC-NA-HTTGTDILWAGLPMITLPLEKMATRVAGSL 831 (922)
Q Consensus 755 ~~~l~~~~~~~g-~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~-~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~ 831 (922)
.+.+.....+.. + .++|.|.|.++..+...+|+.+|+++.|+.+ +| |++++|||+||+|||+.+.....+-+..
T Consensus 209 ~~~~~~~~~~~~~~-~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~-- 285 (335)
T cd03802 209 PDYFYREIAPELLD-GPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVVED-- 285 (335)
T ss_pred HHHHHHHHHHhccc-CCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchhheeC--
Confidence 555665555554 5 4899999999999999999999999999863 67 9999999999999997765544443331
Q ss_pred HHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 832 CLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 832 ~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
|..+ +++++++++++++.++..+.. +..++... ..||++.++++++++|+
T Consensus 286 ----~~~g-~l~~~~~~l~~~l~~l~~~~~--~~~~~~~~------~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 286 ----GVTG-FLVDSVEELAAAVARADRLDR--AACRRRAE------RRFSAARMVDDYLALYR 335 (335)
T ss_pred ----CCcE-EEeCCHHHHHHHHHHHhccHH--HHHHHHHH------HhCCHHHHHHHHHHHhC
Confidence 4455 666779999999888865432 22233222 35999999999999984
|
aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-16 Score=160.41 Aligned_cols=202 Identities=22% Similarity=0.249 Sum_probs=164.6
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
...+..++..+...|++++|+..++++++.+|++..++..++.++...|++++|.+.++++++..|.+...+..++.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 56677777778888888888888888887778877788888888888888888888888888888888888888888888
Q ss_pred HcCChhHHHHHHHHHHhcC--CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 002431 316 EWNMLPAAASYYKATLAVT--TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 393 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 393 (922)
..|++++|...+++++... +.....+..+|.++...|++++|...++++++.+|.+...+..+|.++...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888887653 34556677888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002431 394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 394 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 437 (922)
.++++++..|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 88888888887788888888888888888888888877766543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.6e-18 Score=185.93 Aligned_cols=336 Identities=16% Similarity=0.204 Sum_probs=210.1
Q ss_pred eeeeecCCCCC--ChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCc-----eE--ECCCCCHHHHHHHH
Q 002431 538 RVGYVSSDFGN--HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEH-----FV--DVSAMSSDMIAKLI 608 (922)
Q Consensus 538 rig~~s~~~~~--h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~i 608 (922)
||.+++..+.. ++++..+..+.+.+.+.+++|++++................... +. .........+.+.+
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIIL 80 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHH
Confidence 57788877643 34456777888888777899998886543221101000000000 00 00001124455668
Q ss_pred HhCCCeEEEcCCCcCCCCchh-hhhcCCCceEEeccccCC------CCC--CC-c--------ccEEEecCccCCcCccC
Q 002431 609 NEDKIQILINLNGYTKGARNE-IFAMQPAPIQVSYMGFPG------TTG--AS-Y--------IDYLVTDEFVSPLRYAH 670 (922)
Q Consensus 609 ~~~~~dil~~~~~~~~~~~~~-~~~~~~apvq~~~~g~~~------t~g--~~-~--------~d~~~~d~~~~~~~~~~ 670 (922)
+..++||++..+..+.+.... +......|+..++...+. ..+ .. . ..+-.+|.+++++....
T Consensus 81 ~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~ 160 (374)
T cd03817 81 KELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSEKIA 160 (374)
T ss_pred hhcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccHHHH
Confidence 889999996544333222111 112234677665322110 000 00 0 00113455555544311
Q ss_pred ------CCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCC
Q 002431 671 ------IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPN 742 (922)
Q Consensus 671 ------~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~ 742 (922)
....++..+|+..-... .........+..++++++.++++.+++. .|+.+.++++|.++.+..|+
T Consensus 161 ~~~~~~~~~~~~~vi~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~ 233 (374)
T cd03817 161 DLLREYGVKRPIEVIPTGIDLDR-------FEPVDGDDERRKLGIPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPD 233 (374)
T ss_pred HHHHhcCCCCceEEcCCccchhc-------cCccchhHHHHhcCCCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCC
Confidence 11223344443221100 0111111235566777777777777764 59999999999999888899
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCC
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLE 821 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~ 821 (922)
.+|+++|.++. ...+++.+.+.++ .++|.|.|.++..+....|+.+|+++.|+..+| |++++|||+||+|||+.+..
T Consensus 234 ~~l~i~G~~~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~ 311 (374)
T cd03817 234 VKLVIVGDGPE-REELEELARELGL-ADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAP 311 (374)
T ss_pred eEEEEEeCCch-HHHHHHHHHHcCC-CCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCC
Confidence 99999998876 7788888888999 589999999999999999999999999988777 99999999999999987665
Q ss_pred cchhhhHHHHHHhcCCCCccccC-CHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 822 KMATRVAGSLCLATGLGEEMIVN-SMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 822 ~~~~r~~~~~~~~~g~~~~~i~~-~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
.....+. -|-.+ +++. +.+++++.+.++.+|++.++.++++.++.... ++ +++++++.|++
T Consensus 312 ~~~~~i~------~~~~g-~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~ 373 (374)
T cd03817 312 GLPDLVA------DGENG-FLFPPGDEALAEALLRLLQDPELRRRLSKNAEESAEK---FS---FAKKVEKLYEE 373 (374)
T ss_pred Chhhhee------cCcee-EEeCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHH---HH---HHHHHHHHHhc
Confidence 4443322 13344 4443 33399999999999999999999999887633 33 77888888765
|
UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.2e-16 Score=158.40 Aligned_cols=200 Identities=20% Similarity=0.200 Sum_probs=158.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
...+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+..++..++.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 56777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALN--PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 190 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 190 (922)
..|++++|++.+++++... +.....+..+|.++...|++++|...++++++..|++...+..++.++...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888887643 44556777778888888888888888888888777777777788888888888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002431 191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 191 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (922)
.+++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 888877777777777777777777777777777776665544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-17 Score=182.63 Aligned_cols=177 Identities=18% Similarity=0.174 Sum_probs=144.1
Q ss_pred cCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhh-----HHHHHHHHHHcCCCCCceEEcC
Q 002431 704 RSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG-----EMRLRAYAVAQGVQPDQIIFTD 776 (922)
Q Consensus 704 r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~l~~~~~~~g~~~~rv~f~~ 776 (922)
+..++++.+.++|+.++|+ .|+.+.+++++.++.++.|+.+|+++|+++.. ...++...++.|+ .++|.|.|
T Consensus 211 ~~~~~~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~g 289 (398)
T cd03800 211 RARLLRDPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGV-IDRVDFPG 289 (398)
T ss_pred HHhhccCCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCC-CceEEEec
Confidence 5556677777888888876 49999999999999888999999999976532 2456778888999 48999999
Q ss_pred CCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHH
Q 002431 777 VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERA 853 (922)
Q Consensus 777 ~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~ 853 (922)
.++..+...+++.+|++|.|+.++| |++++|||++|+|||+........-+. . +-.+ ++. .|++++++.+
T Consensus 290 ~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~-----~-~~~g-~~~~~~~~~~l~~~i 362 (398)
T cd03800 290 RVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGGPRDIVV-----D-GVTG-LLVDPRDPEALAAAL 362 (398)
T ss_pred cCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCCHHHHcc-----C-CCCe-EEeCCCCHHHHHHHH
Confidence 9999999999999999999998888 999999999999999766543333221 1 2234 443 4799999999
Q ss_pred HHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 002431 854 VSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 890 (922)
Q Consensus 854 ~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 890 (922)
.++..|++.+..++++.++.. ...|+++.++++++
T Consensus 363 ~~l~~~~~~~~~~~~~a~~~~--~~~~s~~~~~~~~~ 397 (398)
T cd03800 363 RRLLTDPALRRRLSRAGLRRA--RARYTWERVAARLL 397 (398)
T ss_pred HHHHhCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHh
Confidence 999999999999999998876 33599999988875
|
The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light. |
| >PLN02501 digalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=180.43 Aligned_cols=258 Identities=5% Similarity=-0.026 Sum_probs=168.4
Q ss_pred HHHHHHHHHhCCCeEEEcCCCcCC-CCchhhh------hcCCCceEEecc----ccCCCCCCCccc------------EE
Q 002431 601 SDMIAKLINEDKIQILINLNGYTK-GARNEIF------AMQPAPIQVSYM----GFPGTTGASYID------------YL 657 (922)
Q Consensus 601 ~~~~~~~i~~~~~dil~~~~~~~~-~~~~~~~------~~~~apvq~~~~----g~~~t~g~~~~d------------~~ 657 (922)
...+.+.|.+.++||+ |.+ +.-++.. ++|.-|++.++. .|-...+...+- .+
T Consensus 423 ~gdI~~~L~~f~PDVV-----HLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v~r~ 497 (794)
T PLN02501 423 AGDTSQFIPSKDADIA-----ILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRA 497 (794)
T ss_pred hHHHHHHhhccCCCEE-----EECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHHHHh
Confidence 4679999999999999 443 2233333 333348766532 222222221111 12
Q ss_pred EecCccCCcCccCCCccceeecCCccccCCCccccccCCCCCCC-CCcCCCCCCCCcEEEEecCC--CCCCCHHHHHHHH
Q 002431 658 VTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQ-PKRSDYGLPEDKFIFACFNQ--LYKMDPEIFNTWC 734 (922)
Q Consensus 658 ~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~-~~r~~~~l~~~~~~~~~~~~--~~K~~~~~~~~~~ 734 (922)
.+|.+++|+.....+....+...+ +.+ ...+.|... ..+.++|++.....++.++| ..|+++.++++|+
T Consensus 498 hcD~VIaPS~atq~L~~~vI~nVn------GVD--te~F~P~~r~~~~r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla 569 (794)
T PLN02501 498 YCHKVLRLSAATQDLPKSVICNVH------GVN--PKFLKIGEKVAEERELGQQAFSKGAYFLGKMVWAKGYRELIDLLA 569 (794)
T ss_pred hCCEEEcCCHHHHHhcccceeecc------ccc--ccccCCcchhHHHHhcCCccccCceEEEEcccccCCHHHHHHHHH
Confidence 268888888664433222222111 111 112222211 22355676532222233444 4699999999999
Q ss_pred HHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCC
Q 002431 735 NILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGL 813 (922)
Q Consensus 735 ~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~ 813 (922)
.+.+..|+.+|+|+|+||. ++.+++.+.++|+ +|.|+|..+... .+|+.+|||+.||.++| |++++|||+||+
T Consensus 570 ~L~~~~pnvrLvIVGDGP~-reeLe~la~eLgL---~V~FLG~~dd~~--~lyasaDVFVlPS~sEgFGlVlLEAMA~Gl 643 (794)
T PLN02501 570 KHKNELDGFNLDVFGNGED-AHEVQRAAKRLDL---NLNFLKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGK 643 (794)
T ss_pred HHHhhCCCeEEEEEcCCcc-HHHHHHHHHHcCC---EEEecCCCCCHH--HHHHhCCEEEECCCcccchHHHHHHHHcCC
Confidence 9988899999999999987 8899999999998 389999865433 46888999999999999 999999999999
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
|||+...+...- +. -|-.. ++..|.+++++++.+++.|++.+...++ + ..++++..++++++.=
T Consensus 644 PVVATd~pG~e~-V~------~g~nG-ll~~D~EafAeAI~~LLsd~~~rl~~~a--~------~~~SWeAaadrLle~~ 707 (794)
T PLN02501 644 FVVCADHPSNEF-FR------SFPNC-LTYKTSEDFVAKVKEALANEPQPLTPEQ--R------YNLSWEAATQRFMEYS 707 (794)
T ss_pred CEEEecCCCCce-Ee------ecCCe-EecCCHHHHHHHHHHHHhCchhhhHHHH--H------hhCCHHHHHHHHHHhh
Confidence 999765442111 10 13334 5668999999999999998875433322 1 1489999998888764
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=167.79 Aligned_cols=264 Identities=18% Similarity=0.251 Sum_probs=173.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 002431 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 218 (922)
Q Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 218 (922)
+..|..+.+.|+..+|.-.|+.+++.+|.+..+|..||.+....++-..|+..++++++++|++.+++..|+..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 219 PQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298 (922)
Q Consensus 219 ~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 298 (922)
-.+|++++.+-+...|....... + ...+++..- ..+.+. ..+..-.+.|-.+..
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~-a---~~~~~~~~~---------~s~~~~-------------~~l~~i~~~fLeaa~ 422 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVS-A---GENEDFENT---------KSFLDS-------------SHLAHIQELFLEAAR 422 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccc-c---CccccccCC---------cCCCCH-------------HHHHHHHHHHHHHHH
Confidence 88888888887776554110000 0 000000000 000111 112222334444444
Q ss_pred hCC--CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q 002431 299 LQP--SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLV 376 (922)
Q Consensus 299 ~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 376 (922)
..| .++++...||.+|.-.|+|++|+.+|+.++...|++...|+.||-.+....+.++|+..|++|+++.|....+++
T Consensus 423 ~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~Ry 502 (579)
T KOG1125|consen 423 QLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRY 502 (579)
T ss_pred hCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeeh
Confidence 444 566666666666666666777777777777667777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCC----------cHHHHHHHHHHHHhcCCHHHHHHH
Q 002431 377 NRGNTYKEIGRVTDAIQDYIRAITIRPT----------MAEAHANLASAYKDSGHVEAAIKS 428 (922)
Q Consensus 377 ~l~~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~ 428 (922)
++|.++..+|.|++|.+.|-.++.+.+. +..+|..|-.++..+++.+-+.++
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 7777777777777777777777665432 124666666666666666644443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-15 Score=161.58 Aligned_cols=235 Identities=25% Similarity=0.316 Sum_probs=152.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhc-----
Q 002431 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT--------RPN-AIAFGNLASTYYERGQADMAILYYKQAIGC----- 265 (922)
Q Consensus 200 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----- 265 (922)
|.-..+...++..|...|++++|+..++.+++. .|. ......+|.+|...+++.+|+.+|++++.+
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333445556777777777777777777777665 333 333344777777777777777777777632
Q ss_pred ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----C---ChHHHHhHHHHHHHcCChhHHHHHHHHHHhcC
Q 002431 266 ---DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP-----S---HPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334 (922)
Q Consensus 266 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 334 (922)
+|....++.+|+.+|.+.|++++|..++++++++.. . -...+..++.++...+++++|..++++++++.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 444556677777777777777777777777776521 1 12355666667777777777777777666542
Q ss_pred --------CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002431 335 --------TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID--------PLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398 (922)
Q Consensus 335 --------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 398 (922)
+..+..+.+||.+|..+|++++|.++|++++++. +.....+..+|..|.+.+++.+|.+.|.++
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 1224456677777777777777777777776652 222446667777777777777777777766
Q ss_pred Hhh-------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002431 399 ITI-------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434 (922)
Q Consensus 399 l~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 434 (922)
..+ .|+....+.+|+.+|..+|++++|.++.++++.
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 654 233345667777777777777777777766653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=158.89 Aligned_cols=294 Identities=22% Similarity=0.204 Sum_probs=184.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q 002431 104 WSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183 (922)
Q Consensus 104 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 183 (922)
....+..+++..+|.+|+..+..+++..|++...|...+..+...+++++|.-..++.+++.|.........+.++...+
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CC-hhHHHhHHHHHHHcCChHHHHHHH
Q 002431 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR---PN-AIAFGNLASTYYERGQADMAILYY 259 (922)
Q Consensus 184 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~ 259 (922)
+..+|.+.++ +..++ ....|+..+++.+..+ |. ..+...-+.++...|++++|...-
T Consensus 132 ~~i~A~~~~~--------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 132 DLIEAEEKLK--------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHHhh--------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 5555544444 00110 1122222223222221 11 223334455555666666666666
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 002431 260 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA 339 (922)
Q Consensus 260 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 339 (922)
-..+++++.+.++++..|.++....+.+.|+..|++++.++|+...+-...- .|..-.
T Consensus 193 ~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~----------------------~~k~le 250 (486)
T KOG0550|consen 193 IDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASM----------------------MPKKLE 250 (486)
T ss_pred HHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhh----------------------hHHHHH
Confidence 6666666666666666666666666666666666666666665433211100 011112
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLA----ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA 415 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 415 (922)
.+..-|.-.++.|++.+|.++|.+++.++|++ +..|.+++.+..++|+..+|+...+.+++++|....++...|.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 35566778889999999999999999999876 44788889999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC
Q 002431 416 YKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 416 ~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
+...+++++|.+.|+++++...+
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999988665
|
|
| >TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-17 Score=187.96 Aligned_cols=182 Identities=11% Similarity=0.038 Sum_probs=143.4
Q ss_pred CCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhh--CCCeEEEEecCChhh----------HHHHHHHHHHcCCCCCce
Q 002431 707 YGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRR--VPNSALWLLRFPAAG----------EMRLRAYAVAQGVQPDQI 772 (922)
Q Consensus 707 ~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~--~p~~~l~~~~~~~~~----------~~~l~~~~~~~g~~~~rv 772 (922)
++.+++.+++++++|+ .|++..+++++.++.+. .|+.+ +|+|.++.. ...++..+.++|+ .++|
T Consensus 473 ~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL-~g~V 550 (1050)
T TIGR02468 473 FFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDL-YGQV 550 (1050)
T ss_pred hcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCC-CCeE
Confidence 3345566778888886 49999999999998653 45665 456765421 2467888999999 5999
Q ss_pred EEcCCCCcHHHHHhccCC----cEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CC
Q 002431 773 IFTDVAMKQEHIRRSSLA----DLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NS 845 (922)
Q Consensus 773 ~f~~~~~~~~~~~~~~~~----dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~ 845 (922)
.|+|+.+..+...+|+.+ |||+.|+.++| |+|++|||+||+|||+........-+ ..|.++ +++ .|
T Consensus 551 ~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII------~~g~nG-lLVdP~D 623 (1050)
T TIGR02468 551 AYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIH------RVLDNG-LLVDPHD 623 (1050)
T ss_pred EecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHh------ccCCcE-EEECCCC
Confidence 999999999999999877 69999999999 99999999999999954322222111 114455 443 48
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHH
Q 002431 846 MKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLH 900 (922)
Q Consensus 846 ~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~ 900 (922)
++++++++.+++.|++.+++++++.+++.. .|+++.+++++.+.|.....+.
T Consensus 624 ~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~---~FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 624 QQAIADALLKLVADKQLWAECRQNGLKNIH---LFSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999998763 4999999999999999887655
|
Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein. |
| >TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.1e-17 Score=178.41 Aligned_cols=166 Identities=8% Similarity=0.063 Sum_probs=126.6
Q ss_pred CCcEEEEecCC--CCCCCHHHH----HHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHH
Q 002431 711 EDKFIFACFNQ--LYKMDPEIF----NTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHI 784 (922)
Q Consensus 711 ~~~~~~~~~~~--~~K~~~~~~----~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~ 784 (922)
++..+++.+++ ..|+.+.++ ++|..+.+..|+.+|+|+|+|+. . . +++++. .++|.|+|.++ +..
T Consensus 222 ~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~-~-~----~~~l~~-~~~V~~~G~v~--~~~ 292 (397)
T TIGR03087 222 PGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS-P-A----VRALAA-LPGVTVTGSVA--DVR 292 (397)
T ss_pred CCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh-H-H----HHHhcc-CCCeEEeeecC--CHH
Confidence 34445555565 469988877 67888888899999999998874 2 2 334455 47899999876 567
Q ss_pred HhccCCcEEecCCC-CCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHH
Q 002431 785 RRSSLADLFLDTPL-CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQK 862 (922)
Q Consensus 785 ~~~~~~dv~l~~~~-~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~ 862 (922)
.+|+.+||++.|+. .+| +++++|||+||+|||+.+.. ...+...+-.+.+++.|++++++++.+|.+|++.
T Consensus 293 ~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~-------~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~~ 365 (397)
T TIGR03087 293 PYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEA-------AEGIDALPGAELLVAADPADFAAAILALLANPAE 365 (397)
T ss_pred HHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCcc-------cccccccCCcceEeCCCHHHHHHHHHHHHcCHHH
Confidence 77999999999986 467 88999999999999976531 1111111112325668999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 863 LQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
+++++++.|+.+ ...|+++..++++++.|.
T Consensus 366 ~~~~~~~ar~~v--~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 366 REELGQAARRRV--LQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHHH--HHhCCHHHHHHHHHHHhc
Confidence 999999999876 335999999999999875
|
Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. |
| >cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.7e-17 Score=176.55 Aligned_cols=316 Identities=13% Similarity=0.091 Sum_probs=200.7
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHH--HH--hccCc--eEECCCCCHHHHHHHHHhC
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQR--TQ--SEAEH--FVDVSAMSSDMIAKLINED 611 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~--~~--~~~~~--~~~~~~~~~~~~~~~i~~~ 611 (922)
||.+++..+..+++...+..+.+.+.+.+++|.+++............ .. ..... ...........+.+.+++.
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 688999999888888899999999988899999988765432210000 00 00000 0001111246789999999
Q ss_pred CCeEEEcCCCcCCCCchhhhhcC-CCceEEeccccCCCCCCC--------cccEEEecCccCCcCccCCCc--------c
Q 002431 612 KIQILINLNGYTKGARNEIFAMQ-PAPIQVSYMGFPGTTGAS--------YIDYLVTDEFVSPLRYAHIYS--------E 674 (922)
Q Consensus 612 ~~dil~~~~~~~~~~~~~~~~~~-~apvq~~~~g~~~t~g~~--------~~d~~~~d~~~~~~~~~~~~~--------e 674 (922)
++||++.... ....-...+..+ -.|+.+...+........ ..-+..+|.+++++.....+. +
T Consensus 81 ~~dii~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 159 (353)
T cd03811 81 KPDVVISHLT-TTPNVLALLAARLGTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPD 159 (353)
T ss_pred CCCEEEEcCc-cchhHHHHHHhhcCCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhhcCCcc
Confidence 9999965554 111111222211 246665543333222111 011123455555555433222 3
Q ss_pred ceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCCh
Q 002431 675 KLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPA 752 (922)
Q Consensus 675 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~ 752 (922)
++..+|+..... ...+.... +..++.+++.++|++++++ .|+.+.++++|..+.+..|+.+|+++|.++
T Consensus 160 ~~~vi~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~ 230 (353)
T cd03811 160 KIEVIYNPIDIE--------EIRALAEE-PLELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGP 230 (353)
T ss_pred ccEEecCCcChh--------hcCcccch-hhhcCCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCc
Confidence 333344322111 11111010 1034556677888888876 499999999999998888999999999887
Q ss_pred hhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHH
Q 002431 753 AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSL 831 (922)
Q Consensus 753 ~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~ 831 (922)
. .+.+.+...+.|+ .++|.|.|..+ +...+++.+|+++.|+.++| |++++|||++|+|||+.........+..
T Consensus 231 ~-~~~~~~~~~~~~~-~~~v~~~g~~~--~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i~~-- 304 (353)
T cd03811 231 L-REELEALAKELGL-ADRVHFLGFQS--NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGPREILED-- 304 (353)
T ss_pred c-HHHHHHHHHhcCC-CccEEEecccC--CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCChHHHhcC--
Confidence 6 7788888999999 58999999844 56677999999999998888 9999999999999998665544333321
Q ss_pred HHhcCCCCcccc--CCHHHH---HHHHHHHhcCHHHHHHHHHHHHhhc
Q 002431 832 CLATGLGEEMIV--NSMKEY---EERAVSLALDRQKLQALTNKLKSVR 874 (922)
Q Consensus 832 ~~~~g~~~~~i~--~~~~~~---~~~~~~l~~d~~~~~~~~~~~~~~~ 874 (922)
|-.+ ++. ++++++ +..+..+..|++.+.+++...++..
T Consensus 305 ----~~~g-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 347 (353)
T cd03811 305 ----GENG-LLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERV 347 (353)
T ss_pred ----CCce-EEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 3334 443 466677 7888888889998888888655543
|
WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.8e-15 Score=159.33 Aligned_cols=237 Identities=24% Similarity=0.388 Sum_probs=195.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q 002431 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL--------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT---- 232 (922)
Q Consensus 165 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 232 (922)
.|.-..+...++..|...|++++|+..++.+++. .|.-......+|.+|..++++.+|+.+|++++.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4556667777999999999999999999999887 3444445566899999999999999999999875
Q ss_pred ----CCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 233 ----RPN-AIAFGNLASTYYERGQADMAILYYKQAIGC--------DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299 (922)
Q Consensus 233 ----~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 299 (922)
+|. ..++.+|+.+|...|++++|..++++++++ .|.-...+..++.++..++++++|..++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 223 678889999999999999999999988854 2333456778899999999999999999999876
Q ss_pred C-----CCC---hHHHHhHHHHHHHcCChhHHHHHHHHHHhcC--------CCCchhhhhHHHHHHHcCCHHHHHHHHHH
Q 002431 300 Q-----PSH---PQALTNLGNIYMEWNMLPAAASYYKATLAVT--------TGLSAPFNNLAVIYKQQGNYADAISCYNE 363 (922)
Q Consensus 300 ~-----p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 363 (922)
. +++ +..+.++|.+|..+|++++|.++|+++++.. +.....++.+|..|.+.+++.+|.+.|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 2 233 5688999999999999999999999999875 22355688999999999999999999998
Q ss_pred HHcc-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 002431 364 VLRI-------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401 (922)
Q Consensus 364 al~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 401 (922)
+..+ .|+....+.+++.+|..+|++++|+++.++++..
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 8765 3455668999999999999999999999998853
|
|
| >TIGR02470 sucr_synth sucrose synthase | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.5e-17 Score=182.19 Aligned_cols=178 Identities=16% Similarity=0.112 Sum_probs=135.1
Q ss_pred CCCCC--CCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChh-----------hHHHHHHHHHHcCCCC
Q 002431 705 SDYGL--PEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-----------GEMRLRAYAVAQGVQP 769 (922)
Q Consensus 705 ~~~~l--~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----------~~~~l~~~~~~~g~~~ 769 (922)
+.+|+ +.+.+++++++|+ .|+.+.++++|+++.+..+++.|+|+|+++. ..++++..+.+.|+ .
T Consensus 540 ~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL-~ 618 (784)
T TIGR02470 540 EHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQL-H 618 (784)
T ss_pred HHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCC-C
Confidence 45675 4566788888887 4999999999998765566789999987642 12467788999999 5
Q ss_pred CceEEcCCC-CcHH---HHHhcc-CCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhc--CCCCcc
Q 002431 770 DQIIFTDVA-MKQE---HIRRSS-LADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLAT--GLGEEM 841 (922)
Q Consensus 770 ~rv~f~~~~-~~~~---~~~~~~-~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~--g~~~~~ 841 (922)
++|.|+|.. +..+ ++..+. .+|||+.|+.+++ |+|.+|||+||+||| ++++|+ +-..+ |.++ +
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVV-------AT~~GG-~~EiV~dg~tG-f 689 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTF-------ATRFGG-PLEIIQDGVSG-F 689 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEE-------EcCCCC-HHHHhcCCCcE-E
Confidence 999999964 4444 343322 4689999999999 999999999999999 455551 11111 4455 4
Q ss_pred cc--CCHHHHHHHHHHHh----cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 842 IV--NSMKEYEERAVSLA----LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 842 i~--~~~~~~~~~~~~l~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
++ .|++++++++.++. .|++.+.+++++.++++ ...|+++.+++++.....
T Consensus 690 LVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV--~~~FSW~~~A~~ll~l~~ 746 (784)
T TIGR02470 690 HIDPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRI--YEKYTWKIYSERLLTLAG 746 (784)
T ss_pred EeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHh
Confidence 43 47899999888765 69999999999998876 346999999999998864
|
This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria. |
| >PRK14099 glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=178.75 Aligned_cols=183 Identities=18% Similarity=0.131 Sum_probs=132.0
Q ss_pred CcCCCCCCC--CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChh-hHHHHHHHHHHcCCCCCce-EEcC
Q 002431 703 KRSDYGLPE--DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQI-IFTD 776 (922)
Q Consensus 703 ~r~~~~l~~--~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~rv-~f~~ 776 (922)
+|+++|++. +.++|++++|+ .|+.+.+++++.++++. +.+|+|+|+|+. .++.+++.+++++ +++ .|+|
T Consensus 283 l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~--~~~lvivG~G~~~~~~~l~~l~~~~~---~~v~~~~G 357 (485)
T PRK14099 283 LQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALPTLLGE--GAQLALLGSGDAELEARFRAAAQAYP---GQIGVVIG 357 (485)
T ss_pred HHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHHHHHhc--CcEEEEEecCCHHHHHHHHHHHHHCC---CCEEEEeC
Confidence 577899974 46788888876 59999999999998753 689999998753 2567777777654 455 7899
Q ss_pred CCCcHHHHHhc-cCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHH--HHHHhcC-CCCcccc--CCHHHH
Q 002431 777 VAMKQEHIRRS-SLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG--SLCLATG-LGEEMIV--NSMKEY 849 (922)
Q Consensus 777 ~~~~~~~~~~~-~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~--~~~~~~g-~~~~~i~--~~~~~~ 849 (922)
. .++...+| ..+|+||.||.+|| |++.+|||++|+|+|+........-|.. ......| -.+ +++ .|++++
T Consensus 358 ~--~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G-~l~~~~d~~~L 434 (485)
T PRK14099 358 Y--DEALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATG-VQFSPVTADAL 434 (485)
T ss_pred C--CHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCce-EEeCCCCHHHH
Confidence 7 55666655 57999999999999 9999999999965553222111111110 0000000 123 332 478898
Q ss_pred HHHHHH---HhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 850 EERAVS---LALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 850 ~~~~~~---l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
++++.+ +.+|++.+++++++.+. ..|++++++++++++|+++++
T Consensus 435 a~ai~~a~~l~~d~~~~~~l~~~~~~-----~~fSw~~~a~~y~~lY~~l~~ 481 (485)
T PRK14099 435 AAALRKTAALFADPVAWRRLQRNGMT-----TDVSWRNPAQHYAALYRSLVA 481 (485)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhh-----hcCChHHHHHHHHHHHHHHHh
Confidence 888775 77899999888887653 349999999999999999875
|
|
| >PRK10125 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=174.31 Aligned_cols=314 Identities=9% Similarity=0.064 Sum_probs=181.1
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChH----------------HHHHHHhccCceEECCC-C
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTE----------------WRQRTQSEAEHFVDVSA-M 599 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~-~ 599 (922)
|||.++...++.+++++.+..|...+.+.++|+.+.+........ ....+-..-.+..+..+ .
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFG 80 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcchhhcc
Confidence 689999999999999999999999999999998765543221110 00000000012223333 2
Q ss_pred CHHHHHHHH-HhCCCeEEEcCCCcCCCCch---hh---hh-------c-CCCceEEeccccCCCCC--------------
Q 002431 600 SSDMIAKLI-NEDKIQILINLNGYTKGARN---EI---FA-------M-QPAPIQVSYMGFPGTTG-------------- 650 (922)
Q Consensus 600 ~~~~~~~~i-~~~~~dil~~~~~~~~~~~~---~~---~~-------~-~~apvq~~~~g~~~t~g-------------- 650 (922)
+...+.+.| +..++||+ |.|.-.. .+ +. . +..||+.|...+..-||
T Consensus 81 ~~~~~~~~i~~~~~pDvi-----HlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~ 155 (405)
T PRK10125 81 NFNELYRTITRTPGPVVL-----HFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTG 155 (405)
T ss_pred hHHHHHHHHhhccCCCEE-----EEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCccccccccc
Confidence 356778888 57899999 6654321 22 21 1 23699988443322221
Q ss_pred C---Cc--------ccE-----------E-----EecCccCCcCccC-----CC-ccceeecCCccccCCCccccccCCC
Q 002431 651 A---SY--------IDY-----------L-----VTDEFVSPLRYAH-----IY-SEKLVHVPHCYFVNDYKQKNMDVLD 697 (922)
Q Consensus 651 ~---~~--------~d~-----------~-----~~d~~~~~~~~~~-----~~-~e~~~~lp~~~~~~~~~~~~~~~~~ 697 (922)
. |. +|. + ..+.++.|+.... .+ .+++..+|++.-. ....+.
T Consensus 156 c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~~~~i~vI~NGid~------~~~~~~ 229 (405)
T PRK10125 156 CQKCPTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIINNGIDM------ATEAIL 229 (405)
T ss_pred CCCCCCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcCCCCEEEeCCCcCc------cccccc
Confidence 0 00 121 0 1133444444210 00 1223333332211 000000
Q ss_pred CCCCCCcCCCCCCCCcEEEEecCC----CCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceE
Q 002431 698 PNCQPKRSDYGLPEDKFIFACFNQ----LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQII 773 (922)
Q Consensus 698 ~~~~~~r~~~~l~~~~~~~~~~~~----~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~ 773 (922)
+...+.| .+++..+++.+++ ..|+.+.+++++.++ .++.+|+|+|.++. .. .++|.
T Consensus 230 ~~~~~~~----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l---~~~~~L~ivG~g~~-~~------------~~~v~ 289 (405)
T PRK10125 230 AELPPVR----ETQGKPKIAVVAHDLRYDGKTDQQLVREMMAL---GDKIELHTFGKFSP-FT------------AGNVV 289 (405)
T ss_pred ccccccc----cCCCCCEEEEEEeccccCCccHHHHHHHHHhC---CCCeEEEEEcCCCc-cc------------ccceE
Confidence 0001111 1234445555554 348889999998865 35789999998643 11 25689
Q ss_pred EcCCC-CcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHH
Q 002431 774 FTDVA-MKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEY 849 (922)
Q Consensus 774 f~~~~-~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~ 849 (922)
+.|.. +..+...+|+.+|||+.||.++| |++++|||+||+|||+.+......-++ +-.+ +++ .|++++
T Consensus 290 ~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~-------~~~G-~lv~~~d~~~L 361 (405)
T PRK10125 290 NHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVLQ-------KSGG-KTVSEEEVLQL 361 (405)
T ss_pred EecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChHHhEe-------CCcE-EEECCCCHHHH
Confidence 99976 45788889999999999999999 999999999999999543332222121 1123 333 366776
Q ss_pred HHHHHHHhcCHHHHHH-H---HHHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 002431 850 EERAVSLALDRQKLQA-L---TNKLKSVRLTCPLFDTARWVKNLERSYFKM 896 (922)
Q Consensus 850 ~~~~~~l~~d~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 896 (922)
++. .+++.+.+ + ....+++. ...||.+.++++++++|+++
T Consensus 362 a~~-----~~~~~~~~~~~~~~~~~r~~~--~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 362 AQL-----SKPEIAQAVFGTTLAEFSQRS--RAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred Hhc-----cCHHHHHHhhhhHHHHHHHHH--HHhCCHHHHHHHHHHHHHhC
Confidence 652 35555443 2 23344443 34599999999999999863
|
|
| >cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-16 Score=171.90 Aligned_cols=324 Identities=14% Similarity=0.129 Sum_probs=200.2
Q ss_pred eeeeecCCCC--CChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC--------CCCHHHHHH-
Q 002431 538 RVGYVSSDFG--NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS--------AMSSDMIAK- 606 (922)
Q Consensus 538 rig~~s~~~~--~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~- 606 (922)
||.+++..+. .++++.++..+.+.+.+.+++|.+++........ .. ......+..+. .........
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGR-DE--ERNGHRVIRAPSLLNVASTPFSPSFFKQL 77 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcch-hh--hccCceEEEeecccccccccccHHHHHHH
Confidence 4566665554 3456678889999999889999999876543221 11 11111111111 111111111
Q ss_pred HHHhCCCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCCCCCc--cc------EEEecCccCCcCcc-------CC
Q 002431 607 LINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASY--ID------YLVTDEFVSPLRYA-------HI 671 (922)
Q Consensus 607 ~i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~~--~d------~~~~d~~~~~~~~~-------~~ 671 (922)
.+...++||++-......+.....+..+..|+.++|.+......... .. +..+|.+++++... ..
T Consensus 78 ~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~ 157 (357)
T cd03795 78 KKLAKKADVIHLHFPNPLADLALLLLPRKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAETSPVLRR 157 (357)
T ss_pred HhcCCCCCEEEEecCcchHHHHHHHhccCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHhcC
Confidence 15678999995433222222222222245677777754322211100 00 11235555554321 12
Q ss_pred CccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEec
Q 002431 672 YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLR 749 (922)
Q Consensus 672 ~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~ 749 (922)
+.++...+|++.-.... .+...........+.+.++++.++|. .|+.+.+++++.++. +.+|+++|
T Consensus 158 ~~~~~~~i~~gi~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~~~l~i~G 225 (357)
T cd03795 158 FRDKVRVIPLGLDPARY--------PRPDALEEAIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALP----DAPLVIVG 225 (357)
T ss_pred CccceEEecCCCChhhc--------CCcchhhhHhhcCCCCCcEEEEecccccccCHHHHHHHHHhcc----CcEEEEEe
Confidence 23555556654321111 11000000123345556677777764 599999999998765 79999999
Q ss_pred CChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCC--CCC-hhHHHHHHHcCCCeeeecCCcchhh
Q 002431 750 FPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL--CNA-HTTGTDILWAGLPMITLPLEKMATR 826 (922)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~--~~g-~~t~~eal~~g~Pvv~~~~~~~~~r 826 (922)
.|+. ...+++.+++.+. .++|.|.|.++..+...+|+.+|+++.|+. .+| |++++|||++|+|||+.+......-
T Consensus 226 ~g~~-~~~~~~~~~~~~~-~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~ 303 (357)
T cd03795 226 EGPL-EAELEALAAALGL-LDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSY 303 (357)
T ss_pred CChh-HHHHHHHHHhcCC-cceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhH
Confidence 9876 7788888888898 589999999999999999999999999975 366 9999999999999997654433222
Q ss_pred hHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHH
Q 002431 827 VAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWV 886 (922)
Q Consensus 827 ~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (922)
+. .-|-.+ ++. .|.+++++.+..+.+|++.++.++++.++.. ...|+.+.++
T Consensus 304 i~-----~~~~~g-~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~--~~~~s~~~~~ 357 (357)
T cd03795 304 VN-----LHGVTG-LVVPPGDPAALAEAIRRLLEDPELRERLGEAARERA--EEEFTADRMV 357 (357)
T ss_pred Hh-----hCCCce-EEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH--HHhcchHhhC
Confidence 21 113334 443 5899999999999999999999999999876 3468877653
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-15 Score=155.78 Aligned_cols=202 Identities=8% Similarity=0.081 Sum_probs=109.3
Q ss_pred CChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcC-ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH--HHHHHH
Q 002431 217 GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERG-QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV--DEAIQC 292 (922)
Q Consensus 217 g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~--~~A~~~ 292 (922)
++.++|+..+.++++.+|+ ..+|...+.++...| ++++++..++++++.+|++..+|...+.++...|+. ++++.+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3444444444444444444 444444444444444 344555555555555555555555555554444432 344555
Q ss_pred HHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHc---CC----HHHHHHHHHHHH
Q 002431 293 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ---GN----YADAISCYNEVL 365 (922)
Q Consensus 293 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---g~----~~~A~~~~~~al 365 (922)
++++++.+|.+..+|...+.++...|++++|++.+.++++.+|.+..+|+..+.++.+. |. .++++++..+++
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI 210 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAI 210 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555554443 11 235566666666
Q ss_pred ccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Q 002431 366 RIDPLAADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 418 (922)
Q Consensus 366 ~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 418 (922)
..+|++..+|..++.++.. +++..+|...+.++++.+|+++.++..|+.+|..
T Consensus 211 ~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 211 LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 6666666666666666665 3445556666666666666666666666666664
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.5e-15 Score=153.29 Aligned_cols=207 Identities=16% Similarity=0.195 Sum_probs=141.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH--H
Q 002431 42 IYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG-DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRL--N 118 (922)
Q Consensus 42 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--~ 118 (922)
++...+++++|+..+.++++.+|++..+|...+.++...| ++++++..++++++.+|++..+|...+.++.+.|+. +
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 3444566677777777777777777777777777777776 467777777777777777777777777777666653 5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc---CCH----HHHHHH
Q 002431 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES---GDL----NRALQY 191 (922)
Q Consensus 119 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~~A~~~ 191 (922)
+++.+++++++.+|++..+|...+.++...|+++++++.+.++++.+|.+..+|+..+.++... |.+ ++++++
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 6677777777777777777777777777777777777777777777777777777777666554 222 356666
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHH
Q 002431 192 YKEAVKLKPTFPDAYLNLGNVYKA----LGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYE 248 (922)
Q Consensus 192 ~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~ 248 (922)
..+++..+|++..+|..++.++.. .++..+|.+.+.+++...|+ ..++..++.+|..
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 667777777777777777777666 23445566666666655554 5555566666654
|
|
| >cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-16 Score=172.20 Aligned_cols=331 Identities=14% Similarity=0.100 Sum_probs=204.0
Q ss_pred eeeeecCCCCC--ChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHH------HHHhccCceEECCCCCHHHHHHHHH
Q 002431 538 RVGYVSSDFGN--HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQ------RTQSEAEHFVDVSAMSSDMIAKLIN 609 (922)
Q Consensus 538 rig~~s~~~~~--h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~ 609 (922)
||.+++..+.. ++++..+..+.+.+-+.+++|.+++........... .+...........-.....+.+.++
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPPRRRVRRLLD 80 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCCCceeecccccCcccceEecccchhhHHHHHH
Confidence 57777766643 455577888888888788999988865322110000 0000000111111112456788888
Q ss_pred hCCCeEEEcCCCcCCCCchhhhh-cCCCceEEeccccCCCCC----CCccc----------EEEecCccCCcCccC----
Q 002431 610 EDKIQILINLNGYTKGARNEIFA-MQPAPIQVSYMGFPGTTG----ASYID----------YLVTDEFVSPLRYAH---- 670 (922)
Q Consensus 610 ~~~~dil~~~~~~~~~~~~~~~~-~~~apvq~~~~g~~~t~g----~~~~d----------~~~~d~~~~~~~~~~---- 670 (922)
+.++||++-.+....+.....++ .+..|+.+.+.+...... ..... +--+|.+++++....
T Consensus 81 ~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~ 160 (364)
T cd03814 81 AFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLADELR 160 (364)
T ss_pred hcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHHHHh
Confidence 99999995332211111112222 244677665432211000 00000 012355555544321
Q ss_pred -CCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEE
Q 002431 671 -IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWL 747 (922)
Q Consensus 671 -~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~ 747 (922)
....++..+|++.-.. ...+.......+..++ +.+.++++.+++. .|+.+.+++++.++.++ |+.+|++
T Consensus 161 ~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~~l~i 232 (364)
T cd03814 161 ARGFRRVRLWPRGVDTE------LFHPRRRDEALRARLG-PPDRPVLLYVGRLAPEKNLEALLDADLPLRRR-PPVRLVI 232 (364)
T ss_pred ccCCCceeecCCCcccc------ccCcccccHHHHHHhC-CCCCeEEEEEeccccccCHHHHHHHHHHhhhc-CCceEEE
Confidence 1112222233221110 0001111112344444 4445666666654 59999999999999888 9999999
Q ss_pred ecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhh
Q 002431 748 LRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATR 826 (922)
Q Consensus 748 ~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r 826 (922)
+|.++. ...++ +. .++|.|.|..+..+...+|+.+|++|.|+..+| |++++|||++|+|||+.+.......
T Consensus 233 ~G~~~~-~~~~~------~~-~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~ 304 (364)
T cd03814 233 VGDGPA-RARLE------AR-YPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADI 304 (364)
T ss_pred EeCCch-HHHHh------cc-CCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhh
Confidence 998865 44444 44 578999999989999999999999999988888 9999999999999998887655544
Q ss_pred hHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 827 VAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 827 ~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
+.. +-.+ +++ .+.+++++.+.++..|++.+.++.+..++.. ..|+++.+++++++.|+
T Consensus 305 i~~------~~~g-~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 305 VTD------GENG-LLVEPGDAEAFAAALAALLADPELRRRMAARARAEA---ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred hcC------Ccce-EEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH---hhcCHHHHHHHHHHhhC
Confidence 431 2233 333 4777899999999999999999999998875 34999999999998873
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=174.62 Aligned_cols=335 Identities=16% Similarity=0.156 Sum_probs=209.8
Q ss_pred eeeecCCCCC---ChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHh--------ccCc--eEECCC-----CC
Q 002431 539 VGYVSSDFGN---HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQS--------EAEH--FVDVSA-----MS 600 (922)
Q Consensus 539 ig~~s~~~~~---h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~~-----~~ 600 (922)
|.+++..+.. ++.+.++..+++.+.+.+++|++++........... ... .... +..... ..
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDL-LKGRLVGVERLPVLLPVVPLLKGPLLYLLA 79 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhh-cccccccccccccCcchhhccccchhHHHH
Confidence 3456666653 667788999999998889999999875443221110 000 0000 000000 01
Q ss_pred HHHHHHHHH--hCCCeEEEcCCCcCCCCchhhhhc-CCCceEEeccccCCCCCCCcc--------cEEEecCccCCcCcc
Q 002431 601 SDMIAKLIN--EDKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPGTTGASYI--------DYLVTDEFVSPLRYA 669 (922)
Q Consensus 601 ~~~~~~~i~--~~~~dil~~~~~~~~~~~~~~~~~-~~apvq~~~~g~~~t~g~~~~--------d~~~~d~~~~~~~~~ 669 (922)
...+.+.++ ..++||++-......+.....+.. ...|+.+...+.......... -+.-+|.+++++...
T Consensus 80 ~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~ 159 (377)
T cd03798 80 ARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEAL 159 (377)
T ss_pred HHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHHH
Confidence 356788888 999999965533222211112221 224776665443322211110 011234455554431
Q ss_pred CC-------CccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhC
Q 002431 670 HI-------YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRV 740 (922)
Q Consensus 670 ~~-------~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~ 740 (922)
.. ...++..+|++.-. ....+........++...+.++++.+++. .|+.+.+++++..+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~ 231 (377)
T cd03798 160 ADELKALGIDPEKVTVIPNGVDT--------ERFSPADRAEARKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKR 231 (377)
T ss_pred HHHHHHhcCCCCceEEcCCCcCc--------ccCCCcchHHHHhccCCCCceEEEEeccCccccCHHHHHHHHHHHHhcC
Confidence 11 23334444432211 11111101000223445566777777765 599999999999998888
Q ss_pred CCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeec
Q 002431 741 PNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLP 819 (922)
Q Consensus 741 p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~ 819 (922)
|+.+|.++|.++. ...+...++..++ .++|.+.|.++..+....+..+|+++.|+..+| |++++|||++|+|||+.+
T Consensus 232 ~~~~l~i~g~~~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~ 309 (377)
T cd03798 232 PDVHLVIVGDGPL-REALEALAAELGL-EDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATD 309 (377)
T ss_pred CCeEEEEEcCCcc-hHHHHHHHHhcCC-cceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEec
Confidence 9999999998876 6778888888898 589999999999999999999999999987777 999999999999999876
Q ss_pred CCcchhhhHHHHHHhcCCCCccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 820 LEKMATRVAGSLCLATGLGEEMI--VNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 820 ~~~~~~r~~~~~~~~~g~~~~~i--~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
.......+. . +..+ ++ ..|.+++++++.++..|++. .+....+... ...|+++.+++++.+.|++
T Consensus 310 ~~~~~~~~~-----~-~~~g-~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~--~~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 310 VGGIPEIIT-----D-GENG-LLVPPGDPEALAEAILRLLADPWL--RLGRAARRRV--AERFSWENVAERLLELYRE 376 (377)
T ss_pred CCChHHHhc-----C-Ccce-eEECCCCHHHHHHHHHHHhcCcHH--HHhHHHHHHH--HHHhhHHHHHHHHHHHHhh
Confidence 554433222 1 2222 33 35899999999999999886 3444444433 3359999999999998875
|
wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. |
| >cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.3e-16 Score=169.79 Aligned_cols=323 Identities=15% Similarity=0.129 Sum_probs=196.4
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC-----------HHHHHH
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS-----------SDMIAK 606 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 606 (922)
||.++++. .++...++..+++.+.+.+++|++++....... .+......++.++... ...+.+
T Consensus 1 kIl~i~~~--~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (359)
T cd03808 1 KILHIVTV--DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE----ELEALGVKVIPIPLDRRGINPFKDLKALLRLYR 74 (359)
T ss_pred CeeEEEec--chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc----ccccCCceEEeccccccccChHhHHHHHHHHHH
Confidence 46777766 455667888899999878899999987654321 1222222222222111 245678
Q ss_pred HHHhCCCeEEEcCCCcCCCCchhhh----hc-CCCceEE-eccccCCCCCCCc-----------ccEEEecCccCCcCcc
Q 002431 607 LINEDKIQILINLNGYTKGARNEIF----AM-QPAPIQV-SYMGFPGTTGASY-----------IDYLVTDEFVSPLRYA 669 (922)
Q Consensus 607 ~i~~~~~dil~~~~~~~~~~~~~~~----~~-~~apvq~-~~~g~~~t~g~~~-----------~d~~~~d~~~~~~~~~ 669 (922)
.++..++||++ ++.....++ .+ ...|..+ ...++........ .-+..+|.+++++...
T Consensus 75 ~~~~~~~dvv~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~ 149 (359)
T cd03808 75 LLRKERPDIVH-----THTPKPGILGRLAARLAGVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQNEDD 149 (359)
T ss_pred HHHhcCCCEEE-----EccccchhHHHHHHHHcCCCCEEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEcCHHH
Confidence 88889999994 433322222 22 2233333 3222221111111 0012345555555431
Q ss_pred CCCccceeecC-CccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEE
Q 002431 670 HIYSEKLVHVP-HCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALW 746 (922)
Q Consensus 670 ~~~~e~~~~lp-~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~ 746 (922)
.....+....+ ...+...+.........+.. .. .+++.++|+.+++. .|+.+.+++++..+.+..|+.+|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~ 223 (359)
T cd03808 150 RDLALKLGIIKKKKTVLIPGSGVDLDRFSPSP--EP----IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLL 223 (359)
T ss_pred HHHHHHhcCCCcCceEEecCCCCChhhcCccc--cc----cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEE
Confidence 11111110010 11111111100000000100 00 23445677777754 599999999999998888999999
Q ss_pred EecCChhhHHHHHHH-HHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcch
Q 002431 747 LLRFPAAGEMRLRAY-AVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMA 824 (922)
Q Consensus 747 ~~~~~~~~~~~l~~~-~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~ 824 (922)
++|.++. ....... +.+.+. .++|.|.|. ..+...+|+.+|+++.|+.++| |++++|||++|+|||+.+.....
T Consensus 224 i~G~~~~-~~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~ 299 (359)
T cd03808 224 LVGDGDE-ENPAAILEIEKLGL-EGRVEFLGF--RDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCR 299 (359)
T ss_pred EEcCCCc-chhhHHHHHHhcCC-cceEEEeec--cccHHHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCch
Confidence 9998865 3333332 667777 589999998 5677788999999999988888 99999999999999987655443
Q ss_pred hhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 002431 825 TRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 890 (922)
Q Consensus 825 ~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 890 (922)
.-+ .. |-.+ ++. +|++++++.+..+..|++.+..++++.++.. ...|+.+.++++++
T Consensus 300 ~~i-----~~-~~~g-~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~--~~~~s~~~~~~~~~ 358 (359)
T cd03808 300 EAV-----ID-GVNG-FLVPPGDAEALADAIERLIEDPELRARMGQAARKRA--EEEFDEEIVVKKLL 358 (359)
T ss_pred hhh-----hc-Ccce-EEECCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhcCHHHHHHHhh
Confidence 322 11 3334 443 4789999999999999999999999988875 33599999988875
|
cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-13 Score=141.23 Aligned_cols=426 Identities=12% Similarity=0.010 Sum_probs=288.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002431 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113 (922)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 113 (922)
..++.-...+...++|++|.+...+++...|++..+......++.+.++|++|+...+.-....-.+ ...+..+.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHH
Confidence 4555556677888999999999999999999999999999999999999999996655433222221 222688999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 114 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK 193 (922)
Q Consensus 114 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 193 (922)
.++.++|+..++ ..++.+.......+.+++++|+|++|..+|+...+.+.++............. --..+ . ..
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~--a~l~~-~-~~ 164 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA--AALQV-Q-LL 164 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH--HhhhH-H-HH
Confidence 999999999998 44666677889999999999999999999999988776665443222211110 00111 1 23
Q ss_pred HHHhcCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCC--------hhHHHhHHHHHHHcCChHHHH
Q 002431 194 EAVKLKPT-FPDAYLNLGNVYKALGMPQEAIMCYQRAVQT--------RPN--------AIAFGNLASTYYERGQADMAI 256 (922)
Q Consensus 194 ~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~--------~~~~~~l~~~~~~~g~~~~A~ 256 (922)
+.....|. +.+.+++.+.++...|+|.+|++.+++++.+ +.+ ......++.++...|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 33333444 5678999999999999999999999999432 111 345678899999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHc---CCHH--HHHHHHHHHHhhCCC----------ChHHHHhHHHHHHHcCChh
Q 002431 257 LYYKQAIGCDPRFLEAYNNLGNALKDV---GRVD--EAIQCYNQCLSLQPS----------HPQALTNLGNIYMEWNMLP 321 (922)
Q Consensus 257 ~~~~~~l~~~p~~~~~~~~l~~~~~~~---g~~~--~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~~~~~ 321 (922)
..|...++.+|.+........+-+... .++- .++..++......++ -..++.+.+.+.+-.+..+
T Consensus 245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~ 324 (652)
T KOG2376|consen 245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD 324 (652)
T ss_pred HHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 999999988877654332222222111 1111 122222222111111 1234555566666666666
Q ss_pred HHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHH-
Q 002431 322 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA-ADGLVNRGNTYKEIGRVTDAIQDYIRAI- 399 (922)
Q Consensus 322 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al- 399 (922)
++.+.....-...|.....-........+...+.+|.+++.+..+.+|.. ..+.+.++.+...+|+++.|++.+...+
T Consensus 325 q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 325 QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 66665555444444443333344444445557999999999999999987 6788899999999999999999999433
Q ss_pred -------hhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHhhcccCChhhHhHHHHH
Q 002431 400 -------TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR-------PDFPEATCNLLHTLQCVCSWEDRDRMFSE 465 (922)
Q Consensus 400 -------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 465 (922)
+.. ..+.+-..+-..|.+.++.+.|...+.+++.-. +.-...+..++..-...|.-+++.+.+++
T Consensus 405 ~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 405 SWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 322 234555666777888887777777777766532 22222233344444555777788877777
Q ss_pred HHH
Q 002431 466 VEG 468 (922)
Q Consensus 466 ~~~ 468 (922)
+.+
T Consensus 484 l~k 486 (652)
T KOG2376|consen 484 LVK 486 (652)
T ss_pred HHH
Confidence 765
|
|
| >cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-17 Score=184.07 Aligned_cols=178 Identities=13% Similarity=0.182 Sum_probs=141.2
Q ss_pred CCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChh---hHHHHHHHHHHcCCCCCceEEcCCCCcHHHH
Q 002431 710 PEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA---GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHI 784 (922)
Q Consensus 710 ~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~---~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~ 784 (922)
+++.++++.++|+ .|+.+.+++++..+.++.|+.+|+|+|.++. -.+.+++.++++|+ .++|.|+| ..+..
T Consensus 290 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l-~~~V~f~G---~~~v~ 365 (475)
T cd03813 290 EKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGL-EDNVKFTG---FQNVK 365 (475)
T ss_pred CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCC-CCeEEEcC---CccHH
Confidence 3456778888875 5999999999999999999999999998742 24678888999999 59999999 45667
Q ss_pred HhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHH
Q 002431 785 RRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQ 861 (922)
Q Consensus 785 ~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~ 861 (922)
.+|+.+|+++.|+..+| |++++|||+||+|||+.+......-+...--...|-.+ ++. .|++++++++.++.+|++
T Consensus 366 ~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G-~lv~~~d~~~la~ai~~ll~~~~ 444 (475)
T cd03813 366 EYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAG-EVVPPADPEALARAILRLLKDPE 444 (475)
T ss_pred HHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCce-EEECCCCHHHHHHHHHHHhcCHH
Confidence 77889999999998888 99999999999999975544333322210000013344 443 589999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 862 KLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
.+.+++++.+++. ...|+.+.+++++++.|+
T Consensus 445 ~~~~~~~~a~~~v--~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 445 LRRAMGEAGRKRV--ERYYTLERMIDSYRRLYL 475 (475)
T ss_pred HHHHHHHHHHHHH--HHhCCHHHHHHHHHHHhC
Confidence 9999999999877 456899999999999884
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-16 Score=170.99 Aligned_cols=320 Identities=13% Similarity=0.085 Sum_probs=197.1
Q ss_pred eeeeecCCCCCC---hhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEE------------------C
Q 002431 538 RVGYVSSDFGNH---PLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVD------------------V 596 (922)
Q Consensus 538 rig~~s~~~~~h---~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~ 596 (922)
||.+++..+..+ +...++..+.+.+.+.++||.+++........ .. ......... .
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQ-DK--EVIGVVVYGRPIDEVLRSALPRDLFHLS 77 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCc-cc--ccccceeeccccccccCCCchhhhhHHH
Confidence 577888777553 45578888999998888999998875433211 10 000000000 0
Q ss_pred CCC---CHHHHHHHHHhCCCeEEEcCCCcCCCCch-hhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCccC-C
Q 002431 597 SAM---SSDMIAKLINEDKIQILINLNGYTKGARN-EIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAH-I 671 (922)
Q Consensus 597 ~~~---~~~~~~~~i~~~~~dil~~~~~~~~~~~~-~~~~~~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~-~ 671 (922)
... ....+.+.+++.++||++.......+..+ ........|+.++..++........+-....|.+++++.... .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 157 (359)
T cd03823 78 DYDNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLICPRQGLFKKGGDAVIAPSRFLLDR 157 (359)
T ss_pred hccCHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeecchhhhhccCCCEEEEeCHHHHHH
Confidence 000 12456788889999999544332111111 112233468877654332111111000001144444433211 1
Q ss_pred C------ccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCe
Q 002431 672 Y------SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNS 743 (922)
Q Consensus 672 ~------~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~ 743 (922)
+ .+++..+|+..-.. ...+ ... +.+++.++|+.+++. .|+.+.+++++.++.+ |+.
T Consensus 158 ~~~~~~~~~~~~vi~n~~~~~--------~~~~----~~~--~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~~~ 221 (359)
T cd03823 158 YVANGLFAEKISVIRNGIDLD--------RAKR----PRR--APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--GDI 221 (359)
T ss_pred HHHcCCCccceEEecCCcChh--------hccc----ccc--CCCCCceEEEEEecCccccCHHHHHHHHHHHHh--cCc
Confidence 1 12333333321110 0111 000 345566777777765 5999999999998876 889
Q ss_pred EEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCC-CCC-hhHHHHHHHcCCCeeeecCC
Q 002431 744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL-CNA-HTTGTDILWAGLPMITLPLE 821 (922)
Q Consensus 744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~-~~g-~~t~~eal~~g~Pvv~~~~~ 821 (922)
+|+++|.++. ........ +. .++|.|.|.++..+...+|+.+|+++.|+. ++| |++++|||++|+|||+.+..
T Consensus 222 ~l~i~G~~~~-~~~~~~~~---~~-~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~ 296 (359)
T cd03823 222 ELVIVGNGLE-LEEESYEL---EG-DPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIG 296 (359)
T ss_pred EEEEEcCchh-hhHHHHhh---cC-CCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCC
Confidence 9999998765 33332222 55 489999999999999999999999999986 566 99999999999999987655
Q ss_pred cchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 822 KMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 822 ~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
.....+. . |..+ ++. .|.+++++.+.++.+|++.++.++++.++.. +.+.+++++++.|+
T Consensus 297 ~~~e~i~-----~-~~~g-~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 358 (359)
T cd03823 297 GMAELVR-----D-GVNG-LLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPR------SIEDQAEEYLKLYR 358 (359)
T ss_pred CHHHHhc-----C-CCcE-EEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhh------hHHHHHHHHHHHhh
Confidence 4433222 1 3334 333 4689999999999999999999999988864 22888999998885
|
ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II). |
| >PRK14098 glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.7e-16 Score=174.89 Aligned_cols=182 Identities=10% Similarity=0.074 Sum_probs=135.6
Q ss_pred CcCCCCCC--CCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhh-HHHHHHHHHHcCCCCCceEEcCC
Q 002431 703 KRSDYGLP--EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG-EMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 703 ~r~~~~l~--~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
+++++|++ ++.+++++++|+ .|+.+.+++++.++++ ++.+|+|+|+|+.. ++.+++.++++ +++|.|.|.
T Consensus 295 l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~---~~~V~~~g~ 369 (489)
T PRK14098 295 LLEEVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSGDKEYEKRFQDFAEEH---PEQVSVQTE 369 (489)
T ss_pred HHHHhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHHHHC---CCCEEEEEe
Confidence 45678887 356889999876 5999999999999875 47999999988642 46788888776 378999998
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHH
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAV 854 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~ 854 (922)
.+..+...+|+.+|+||.||.+++ |++.+|||++|+|+|+........-+.. .. .-|-++ ++. .|++++++++.
T Consensus 370 ~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~-~~-~~~~~G-~l~~~~d~~~la~ai~ 446 (489)
T PRK14098 370 FTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE-VS-EDKGSG-FIFHDYTPEALVAKLG 446 (489)
T ss_pred cCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec-CC-CCCCce-eEeCCCCHHHHHHHHH
Confidence 888888889999999999999999 9999999999988775433222211100 00 001223 332 47888888776
Q ss_pred H---HhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 002431 855 S---LALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 897 (922)
Q Consensus 855 ~---l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 897 (922)
+ +.+|++.+++++++.. ...||++.++++++++|++++
T Consensus 447 ~~l~~~~~~~~~~~~~~~~~-----~~~fsw~~~a~~y~~lY~~~~ 487 (489)
T PRK14098 447 EALALYHDEERWEELVLEAM-----ERDFSWKNSAEEYAQLYRELL 487 (489)
T ss_pred HHHHHHcCHHHHHHHHHHHh-----cCCCChHHHHHHHHHHHHHHh
Confidence 5 4468887777665432 246999999999999999876
|
|
| >KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.3e-16 Score=152.11 Aligned_cols=163 Identities=13% Similarity=0.159 Sum_probs=133.4
Q ss_pred EEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 714 FIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 714 ~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
.++...+|+ .|+.+-++++-.++.++.|+++++|+|+||. +..+++..+++-+ .+||.|+|.++.++.-+.|...|
T Consensus 196 ~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk-~i~lee~lEk~~l-~~rV~~lG~v~h~~Vr~vl~~G~ 273 (426)
T KOG1111|consen 196 ITIVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPK-RIDLEEMLEKLFL-QDRVVMLGTVPHDRVRDVLVRGD 273 (426)
T ss_pred eEEEEEeeeeeccchHHHHHHHHHHHhcCCCeeEEEecCCcc-cchHHHHHHHhhc-cCceEEecccchHHHHHHHhcCc
Confidence 556666665 4999999999999999999999999999997 8889999999999 69999999999999999999999
Q ss_pred EEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC--------CHHHHHHHHHHHhcCHHH
Q 002431 792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--------SMKEYEERAVSLALDRQK 862 (922)
Q Consensus 792 v~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--------~~~~~~~~~~~l~~d~~~ 862 (922)
|||.||..+. |++++||+.||+||| .+||| |+|| .+.. ++++.+++..+-.+....
T Consensus 274 IFlntSlTEafc~~ivEAaScGL~VV-------sTrVG-------GIpe-VLP~d~i~~~~~~~~dl~~~v~~ai~~~~~ 338 (426)
T KOG1111|consen 274 IFLNTSLTEAFCMVIVEAASCGLPVV-------STRVG-------GIPE-VLPEDMITLGEPGPDDLVGAVEKAITKLRT 338 (426)
T ss_pred EEeccHHHHHHHHHHHHHHhCCCEEE-------EeecC-------Cccc-cCCccceeccCCChHHHHHHHHHHHHHhcc
Confidence 9999999988 999999999999999 79999 9999 6654 366666555554432211
Q ss_pred HHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 863 LQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
. -...-++. +..|+++..|++.|+.|..+-.
T Consensus 339 ~---p~~~h~~v--~~~y~w~dVa~rTekvy~r~~~ 369 (426)
T KOG1111|consen 339 L---PLEFHDRV--KKMYSWKDVAERTEKVYDRAAT 369 (426)
T ss_pred C---chhHHHHH--HHhccHHHHHHHHHHHHHHHhh
Confidence 1 11122222 4469999999999999987643
|
|
| >TIGR02095 glgA glycogen/starch synthases, ADP-glucose type | Back alignment and domain information |
|---|
Probab=99.68 E-value=8e-16 Score=174.17 Aligned_cols=182 Identities=16% Similarity=0.028 Sum_probs=136.4
Q ss_pred CcCCCCCCC--CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCCh-hhHHHHHHHHHHcCCCCCceEEcCC
Q 002431 703 KRSDYGLPE--DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPA-AGEMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 703 ~r~~~~l~~--~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~-~~~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
+|+++|++. +.+++++++|+ .|+.+.+++++.++.+. +.+|+|+|.|+ ...+.+++.+.+.+ ++|.|.+.
T Consensus 279 l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~l~~~~~~~~---~~v~~~~~ 353 (473)
T TIGR02095 279 LQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTGDPELEEALRELAERYP---GNVRVIIG 353 (473)
T ss_pred HHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCCCHHHHHHHHHHHHHCC---CcEEEEEc
Confidence 678899986 67888888876 59999999999998764 48999999884 23567777776653 57888887
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHH
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAV 854 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~ 854 (922)
.+.++...+|+.+|++|.|+.++| |++.+|||++|+|||+.....+..-+...--...+-.+ ++. .|++++++.+.
T Consensus 354 ~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G-~l~~~~d~~~la~~i~ 432 (473)
T TIGR02095 354 YDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTG-FLFEEYDPGALLAALS 432 (473)
T ss_pred CCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCce-EEeCCCCHHHHHHHHH
Confidence 777777778999999999999999 99999999999999955433332222100000000223 332 48889998888
Q ss_pred HHhc----CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 855 SLAL----DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 855 ~l~~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
++.. |++.+.+++++..+ ..||++.++++++++|++
T Consensus 433 ~~l~~~~~~~~~~~~~~~~~~~-----~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 433 RALRLYRQDPSLWEALQKNAMS-----QDFSWDKSAKQYVELYRS 472 (473)
T ss_pred HHHHHHhcCHHHHHHHHHHHhc-----cCCCcHHHHHHHHHHHHh
Confidence 8776 88888888776643 359999999999999986
|
This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-13 Score=149.85 Aligned_cols=269 Identities=14% Similarity=0.008 Sum_probs=188.5
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002431 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS 105 (922)
Q Consensus 29 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 105 (922)
+|+.+.++..+|..+...|+.+++.+.+.++.+..+.+ .+.....+..+...|++++|.+.++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68888999999999999999999888888888777654 456777788889999999999999999999999887766
Q ss_pred HHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 002431 106 NLASAYMRKG----RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181 (922)
Q Consensus 106 ~la~~~~~~g----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 181 (922)
. +..+...| ....+.+.+......+|........++.++..+|++++|...++++++..|++..++..++.++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 4 44444444 444444444443345667777778888899999999999999999999999998888999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHH----hHHHHHHHcCC
Q 002431 182 SGDLNRALQYYKEAVKLKPTFPD----AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFG----NLASTYYERGQ 251 (922)
Q Consensus 182 ~g~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~----~l~~~~~~~g~ 251 (922)
.|++++|+..+++.+...|.++. .+..++.++...|++++|+..+++++...|. ..... .+...+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 99999999999998887764332 4567888899999999999999888765552 11111 22222333333
Q ss_pred hHHHHHH--H-HHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 252 ADMAILY--Y-KQAIGCDPR--FLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298 (922)
Q Consensus 252 ~~~A~~~--~-~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 298 (922)
...+... + .......+. ........+.++...|+.++|...++.+..
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2222222 1 111111111 112223456666677777777777766654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR02918 accessory Sec system glycosylation protein GtfA | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=169.84 Aligned_cols=167 Identities=13% Similarity=0.110 Sum_probs=134.2
Q ss_pred EEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 714 FIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 714 ~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
.+++.++|+ .|+.+.++++|.++.+..|+.+|.|+|+|+. .+.|++.+++.|+ .++|.|.|..+ ...+|+.+|
T Consensus 320 ~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~-~~~l~~~i~~~~l-~~~V~f~G~~~---~~~~~~~ad 394 (500)
T TIGR02918 320 FSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGE-KQKLQKIINENQA-QDYIHLKGHRN---LSEVYKDYE 394 (500)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchh-HHHHHHHHHHcCC-CCeEEEcCCCC---HHHHHHhCC
Confidence 455556654 6999999999999999999999999999986 7899999999999 59999999764 445578899
Q ss_pred EEecCCCCCC-hhHHHHHHHcCCCeeeecCC-cchhhhHHHHHHhcCCCCccccC------C----HHHHHHHHHHHhcC
Q 002431 792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLE-KMATRVAGSLCLATGLGEEMIVN------S----MKEYEERAVSLALD 859 (922)
Q Consensus 792 v~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~-~~~~r~~~~~~~~~g~~~~~i~~------~----~~~~~~~~~~l~~d 859 (922)
+||.||.++| |+|++|||+||+|||+.... ...+ ++ .-|.++ +++. | ++++++++.+|++
T Consensus 395 v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G~~e-----iI-~~g~nG-~lv~~~~~~~d~~~~~~~la~~I~~ll~- 466 (500)
T TIGR02918 395 LYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYGNPT-----FI-EDNKNG-YLIPIDEEEDDEDQIITALAEKIVEYFN- 466 (500)
T ss_pred EEEEcCccccccHHHHHHHHhCCCEEEecCCCCCHH-----Hc-cCCCCE-EEEeCCccccchhHHHHHHHHHHHHHhC-
Confidence 9999999999 99999999999999975421 1122 11 126666 5543 2 7889999999994
Q ss_pred HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 002431 860 RQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKM 896 (922)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 896 (922)
++.+.++++..++.. ..|+.+..+++++++++++
T Consensus 467 ~~~~~~~~~~a~~~a---~~fs~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 467 SNDIDAFHEYSYQIA---EGFLTANIIEKWKKLVREV 500 (500)
T ss_pred hHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHhhC
Confidence 567889999998864 3499999999999888753
|
Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-13 Score=132.06 Aligned_cols=417 Identities=17% Similarity=0.129 Sum_probs=252.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 002431 7 HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLA 86 (922)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 86 (922)
..+.+..+|..|++++..-.+.+|.+...+..+|.||+...+|..|..+|++.-...|......+..+..+++.+.+.+|
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 45588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002431 87 IRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166 (922)
Q Consensus 87 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 166 (922)
+.+...+.....-.......-+.+.+..+++..+..+.++.-. .++.+.....|.+.++.|++++|.+-|+.+++...
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 9998887654222344555566677788888888777766532 25677888999999999999999999999999988
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHH-HHHHHHHHHHHcCCh-HHHHHHHHHHHhhCCChhHHH
Q 002431 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKL----KPTFPD-AYLNLGNVYKALGMP-QEAIMCYQRAVQTRPNAIAFG 240 (922)
Q Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~-~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~ 240 (922)
-++..-++++.+.++.+++..|+++..++++. .|...- .......+ ...|+. .-++..+ .++++
T Consensus 176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt~~lh~Sal---------~eAfN 245 (459)
T KOG4340|consen 176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNTLVLHQSAL---------VEAFN 245 (459)
T ss_pred CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccchHHHHHHHH---------HHHhh
Confidence 88888899999999999999999988888764 232100 00000000 000000 0000000 22333
Q ss_pred hHHHHHHHcCChHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcC
Q 002431 241 NLASTYYERGQADMAILYYKQAIGCDP--RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 318 (922)
Q Consensus 241 ~l~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 318 (922)
..+.++++.++++.|.+.+..+-.... -++.++.+++..- ..+++.+..+-++-.++++|-.++.+.++-.+|++..
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhH
Confidence 444455555555555544443321110 1122333333221 1233444444444455555544555555555555555
Q ss_pred ChhHHHHHHHHHHhcCCC-CchhhhhHHHHH-HHcCCHHHHHHHHHHHHccCCCCHHHHHHH-HHHHHH-----hCCHHH
Q 002431 319 MLPAAASYYKATLAVTTG-LSAPFNNLAVIY-KQQGNYADAISCYNEVLRIDPLAADGLVNR-GNTYKE-----IGRVTD 390 (922)
Q Consensus 319 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-~~~~~~-----~g~~~~ 390 (922)
-++-|...+.+--...-. -....+.+-..+ ..+-..++|.+-+...-..-- .-+..+ +.+... .....+
T Consensus 325 yf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~---~kLRklAi~vQe~r~~~dd~a~R~ 401 (459)
T KOG4340|consen 325 YFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLT---EKLRKLAIQVQEARHNRDDEAIRK 401 (459)
T ss_pred HHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccHHHHHH
Confidence 555444443221100000 000111111111 122344444443333221100 000000 011100 112334
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 391 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
|++.|+.++++. ..+....+++|+...++..+.+.|++..+...++...
T Consensus 402 ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~W 450 (459)
T KOG4340|consen 402 AVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVW 450 (459)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhccccee
Confidence 555666666553 3356778889999999999999999988887666543
|
|
| >PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=170.29 Aligned_cols=330 Identities=10% Similarity=0.037 Sum_probs=186.8
Q ss_pred hhhhHHhhcCCCCC--eEEEEEecCCCCChHHHHHHHhccCceEECCCCCHHHHHHHHHhCCCeEEEcCCCcCCCCchhh
Q 002431 553 HLMGSVFGMHNKEN--VEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEI 630 (922)
Q Consensus 553 ~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~ 630 (922)
..+.++++.+.+.. +.|.+-+..+. +..+.+........++.++--....+.+.|+..++||+|-..+....+.+..
T Consensus 64 ~~~~~l~~~l~~~~~~~~i~~t~~t~~-~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~~~~~~~~~~~l~~ 142 (425)
T PRK05749 64 RAAIPLIRALRKRYPDLPILVTTMTPT-GSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVIIMETELWPNLIAE 142 (425)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeCCCcc-HHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEEEEecchhHHHHHH
Confidence 56677777665443 44443333222 2222222222122233444334678899999999999965433332222223
Q ss_pred hhcCCCceEEeccccCCCCC-----CCcc---cEEEecCccCCcCccCCCccceeecCCccccCCCcc-ccccCCCC---
Q 002431 631 FAMQPAPIQVSYMGFPGTTG-----ASYI---DYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQ-KNMDVLDP--- 698 (922)
Q Consensus 631 ~~~~~apvq~~~~g~~~t~g-----~~~~---d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~~~~-~~~~~~~~--- 698 (922)
...+..|+.+..-..+..+. .+.+ -+...|.++++++.......++ .+|.. +...++. ......+.
T Consensus 143 ~~~~~ip~vl~~~~~~~~s~~~~~~~~~~~r~~~~~~d~ii~~S~~~~~~l~~~-g~~~~-i~vi~n~~~d~~~~~~~~~ 220 (425)
T PRK05749 143 LKRRGIPLVLANARLSERSFKRYQKFKRFYRLLFKNIDLVLAQSEEDAERFLAL-GAKNE-VTVTGNLKFDIEVPPELAA 220 (425)
T ss_pred HHHCCCCEEEEeccCChhhHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHc-CCCCC-cEecccccccCCCChhhHH
Confidence 33455788775311111110 0000 0112355555555422211111 12221 1111110 00000000
Q ss_pred CCCCCcCCCCCCCCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCC
Q 002431 699 NCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVA 778 (922)
Q Consensus 699 ~~~~~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~ 778 (922)
.....|.++| + +..++.+.++..|....++++|.++.++.|+.+|+|+|+|+...+.+++.+++.|++ .+.|.|..
T Consensus 221 ~~~~~r~~~~-~-~~~vil~~~~~~~~~~~ll~A~~~l~~~~~~~~liivG~g~~r~~~l~~~~~~~gl~--~~~~~~~~ 296 (425)
T PRK05749 221 RAATLRRQLA-P-NRPVWIAASTHEGEEELVLDAHRALLKQFPNLLLILVPRHPERFKEVEELLKKAGLS--YVRRSQGE 296 (425)
T ss_pred HHHHHHHHhc-C-CCcEEEEeCCCchHHHHHHHHHHHHHHhCCCcEEEEcCCChhhHHHHHHHHHhCCCc--EEEccCCC
Confidence 0112456666 4 334555556667888889999999998899999999999986337899999999984 34554421
Q ss_pred ------------CcHHHHHhccCCcEE-ecCCC-CCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC
Q 002431 779 ------------MKQEHIRRSSLADLF-LDTPL-CNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN 844 (922)
Q Consensus 779 ------------~~~~~~~~~~~~dv~-l~~~~-~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~ 844 (922)
...+...+|+.+||+ +-++. .+||.+.+|||++|+|||+.+...-.+-+. ..+...|.- +...
T Consensus 297 ~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~-~~~~~~g~~--~~~~ 373 (425)
T PRK05749 297 PPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIF-ERLLQAGAA--IQVE 373 (425)
T ss_pred CCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHH-HHHHHCCCe--EEEC
Confidence 135788899999995 54554 346999999999999999744211111111 122222320 2247
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 002431 845 SMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 897 (922)
Q Consensus 845 ~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 897 (922)
|++++++.+.+|.+|++.+++++++.++..... .+.++++.+.+++..
T Consensus 374 d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~-----~~~~~~~~~~l~~~l 421 (425)
T PRK05749 374 DAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQN-----QGALQRTLQLLEPYL 421 (425)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC-----ccHHHHHHHHHHHhc
Confidence 999999999999999999999999999876431 355566666665543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.9e-13 Score=147.19 Aligned_cols=204 Identities=20% Similarity=0.083 Sum_probs=142.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002431 63 EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHS 139 (922)
Q Consensus 63 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 139 (922)
+|+.+.++..+|..+...|+.+.|.+.+.++.+..|.+ .+.....+..+...|++++|.+.++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 67778888888888888888888888787777765543 445666677778888888888888888888888776655
Q ss_pred HHHHHHHHcC----CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002431 140 NLGNLMKAQG----LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA 215 (922)
Q Consensus 140 ~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 215 (922)
. +..+...| ....+.+.+.......|.....+..++.++...|++++|...++++++..|++...+..++.++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 4 44444333 333344433333344566666667777777788888888888888888887777777777878877
Q ss_pred cCChHHHHHHHHHHHhhCCC-----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCC
Q 002431 216 LGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQADMAILYYKQAIGCDP 267 (922)
Q Consensus 216 ~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 267 (922)
.|++++|+..+++.+...|. ...+..++.++...|++++|+..+++++...|
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 88888888877777776542 22345667777777777777777777654444
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=167.58 Aligned_cols=169 Identities=13% Similarity=0.128 Sum_probs=134.6
Q ss_pred CCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCC--eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHh
Q 002431 711 EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPN--SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRR 786 (922)
Q Consensus 711 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~--~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~ 786 (922)
++.+++++++++ .|+.+.+++++.++.+..|+ .+++++|+|+. .+.++..+++.+. .++|.|+|.++..+...+
T Consensus 228 ~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~-~~~l~~~~~~~~~-~~~V~f~G~v~~~e~~~~ 305 (407)
T cd04946 228 DDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGPL-EDTLKELAESKPE-NISVNFTGELSNSEVYKL 305 (407)
T ss_pred CCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCchH-HHHHHHHHHhcCC-CceEEEecCCChHHHHHH
Confidence 345677777765 59999999999999998875 45677888876 7789988888888 589999999999999888
Q ss_pred ccC--CcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHH
Q 002431 787 SSL--ADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQ 861 (922)
Q Consensus 787 ~~~--~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~ 861 (922)
|.. +|+|+.|+.++| |++++|||++|+|||+........-+. . |.++.++. +|++++++++.++.+|++
T Consensus 306 ~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~~e~i~-----~-~~~G~l~~~~~~~~~la~~I~~ll~~~~ 379 (407)
T cd04946 306 YKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTPEIVD-----N-GGNGLLLSKDPTPNELVSSLSKFIDNEE 379 (407)
T ss_pred HhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCcHHHhc-----C-CCcEEEeCCCCCHHHHHHHHHHHHhCHH
Confidence 864 899999999999 999999999999999644332222222 1 33341333 378999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCChHHHHHHH
Q 002431 862 KLQALTNKLKSVRLTCPLFDTARWVKNL 889 (922)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (922)
.+..|+++.++.. ...||.+...+++
T Consensus 380 ~~~~m~~~ar~~~--~~~f~~~~~~~~~ 405 (407)
T cd04946 380 EYQTMREKAREKW--EENFNASKNYREF 405 (407)
T ss_pred HHHHHHHHHHHHH--HHHcCHHHhHHHh
Confidence 9999999999987 4469988877665
|
AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-12 Score=141.06 Aligned_cols=296 Identities=18% Similarity=0.149 Sum_probs=221.2
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
++-.+..+...|++++|++++++....-.+....+...|.++.++|++++|...|...++.+|++...+..+..+.....
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence 45577889999999999999999888778888999999999999999999999999999999999999999988884433
Q ss_pred -----CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002431 82 -----DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN-EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAY 155 (922)
Q Consensus 82 -----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 155 (922)
+.+.-..+|++..+..|..... ..+...+..-..+. .+..++...+..+ -|..+..+-.+|....+..-..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~Kg--vPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRKG--VPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHcChhHHHHHH
Confidence 5677788898888888774322 22222222222333 3334445555443 4556666666665444433333
Q ss_pred HHHHHHHhh---------------CCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 002431 156 SCYLEALRI---------------QPTF--AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 218 (922)
Q Consensus 156 ~~~~~al~~---------------~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 218 (922)
.++...... .|.. ..+++.++..|-..|++++|+++++++++..|..++.|...|.++...|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 333333221 1222 24568889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcC--CCc-------HHHHHHHHHHHHHcCCHHH
Q 002431 219 PQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCD--PRF-------LEAYNNLGNALKDVGRVDE 288 (922)
Q Consensus 219 ~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~-------~~~~~~l~~~~~~~g~~~~ 288 (922)
+.+|.+.++.+-+.++. ...-...+..+.+.|+.++|.+.+......+ |.. .+.....|.+|.+.|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999998887 4455566778889999999999988876544 211 1223456889999999999
Q ss_pred HHHHHHHHHhhC
Q 002431 289 AIQCYNQCLSLQ 300 (922)
Q Consensus 289 A~~~~~~al~~~ 300 (922)
|++.|..+.+..
T Consensus 324 ALk~~~~v~k~f 335 (517)
T PF12569_consen 324 ALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999998887753
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-11 Score=125.32 Aligned_cols=446 Identities=15% Similarity=0.168 Sum_probs=294.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNP--LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
-...+..+|+...-...|++++..-| .+...|-.........+-.+-++..|++.++..|...+- ....+...++
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~ee---yie~L~~~d~ 184 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREE---YIEYLAKSDR 184 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHH---HHHHHHhccc
Confidence 34556677777777777777776655 334455555555556666667777777777777665332 2334555666
Q ss_pred HHHHHHHHHHHHhc--------------------------------------------CCC-cHHHHHHHHHHHHHcCCH
Q 002431 83 IDLAIRYYLVAIEL--------------------------------------------RPN-FADAWSNLASAYMRKGRL 117 (922)
Q Consensus 83 ~~~A~~~~~~al~~--------------------------------------------~p~-~~~~~~~la~~~~~~g~~ 117 (922)
+++|.+.+...+.. .++ -...|..||..|.+.|.+
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhh
Confidence 66666666555432 111 123577888889999999
Q ss_pred HHHHHHHHHHHHhCC---CCHHHHHHHH-----HHHHHcC-------------CHHHHHHHHHHHH------------hh
Q 002431 118 NEAAQCCRQALALNP---LLVDAHSNLG-----NLMKAQG-------------LVQEAYSCYLEAL------------RI 164 (922)
Q Consensus 118 ~~A~~~~~~~l~~~p---~~~~~~~~la-----~~~~~~g-------------~~~~A~~~~~~al------------~~ 164 (922)
++|..+|++++..-- +-..++...+ .+..+.+ +.+-....|+..+ +.
T Consensus 265 ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ 344 (835)
T KOG2047|consen 265 EKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ 344 (835)
T ss_pred HHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc
Confidence 999999988876531 1111111111 1111111 1222333344433 33
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-C--
Q 002431 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK-LKPTF-----PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-N-- 235 (922)
Q Consensus 165 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~-- 235 (922)
+|++...|.....+ ..|+..+-+..|.++++ .+|.. ...|..++..|...|+.+.|..+|+++.+..- .
T Consensus 345 n~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 345 NPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 66666666665544 36778888888888876 34432 34788999999999999999999999987532 2
Q ss_pred --hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCC------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 236 --AIAFGNLASTYYERGQADMAILYYKQAIGCDP------------------RFLEAYNNLGNALKDVGRVDEAIQCYNQ 295 (922)
Q Consensus 236 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (922)
..+|..-|..-....+++.|+++.+.+..... ++...|..++......|-++.....|++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 67888888888899999999999998873211 1234677788888888999999999999
Q ss_pred HHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcC--CCCchhhhhHHHHHH---HcCCHHHHHHHHHHHHccCCC
Q 002431 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT--TGLSAPFNNLAVIYK---QQGNYADAISCYNEVLRIDPL 370 (922)
Q Consensus 296 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~ 370 (922)
++++.--.|.+..+.|..+....-++++.+.|++.+.+. |....+|+..-..+. ...+.+.|..+|+++++..|.
T Consensus 503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 999888888999999999999999999999999998886 444556655443333 345789999999999998773
Q ss_pred C-HH-HHHHHHHHHHHhCCHHHHHHHHHHH------------------------------------HhhCCCc--HHHHH
Q 002431 371 A-AD-GLVNRGNTYKEIGRVTDAIQDYIRA------------------------------------ITIRPTM--AEAHA 410 (922)
Q Consensus 371 ~-~~-~~~~l~~~~~~~g~~~~A~~~~~~a------------------------------------l~~~p~~--~~~~~ 410 (922)
. .. .+...+..-.+-|.-..|+.+|+++ ++.-|+. .+...
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mcl 662 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCL 662 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHH
Confidence 2 22 3444455555556655555555544 4443332 23445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC-C-CHHHHHHHHHhhcccCC
Q 002431 411 NLASAYKDSGHVEAAIKSYKQALLLRP-D-FPEATCNLLHTLQCVCS 455 (922)
Q Consensus 411 ~la~~~~~~g~~~~A~~~~~~al~~~p-~-~~~~~~~l~~~~~~~~~ 455 (922)
..+.+-.+.|..+.|..+|.-.-++.+ . ++..|...-..-...|+
T Consensus 663 rFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 663 RFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 567777888888888888888877743 2 44555555445555565
|
|
| >PLN00142 sucrose synthase | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=170.45 Aligned_cols=179 Identities=12% Similarity=0.061 Sum_probs=135.3
Q ss_pred CCCCC--CCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChh-----hH------HHHHHHHHHcCCCC
Q 002431 705 SDYGL--PEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-----GE------MRLRAYAVAQGVQP 769 (922)
Q Consensus 705 ~~~~l--~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----~~------~~l~~~~~~~g~~~ 769 (922)
..+|+ +++..++++++|+ .|+.+.++++++++.+..|+++|+|+|++.. .. .++++.+.+.|+ .
T Consensus 563 e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL-~ 641 (815)
T PLN00142 563 EHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNL-K 641 (815)
T ss_pred HHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCC-C
Confidence 34665 3445678888887 4999999999999877778899999987621 01 357788899999 5
Q ss_pred CceEEcCCC----CcHHHHHhcc-CCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc
Q 002431 770 DQIIFTDVA----MKQEHIRRSS-LADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV 843 (922)
Q Consensus 770 ~rv~f~~~~----~~~~~~~~~~-~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~ 843 (922)
++|.|+|.. +..+...++. .+|||+.|+.++| |+|++|||+||+|||+........-|. -|.++ +++
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~------dG~tG-~LV 714 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPAEIIV------DGVSG-FHI 714 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhc------CCCcE-EEe
Confidence 999999853 3356666555 5799999999999 999999999999999533222221111 15556 443
Q ss_pred --CCHHHHHHHHHH----HhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 844 --NSMKEYEERAVS----LALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 844 --~~~~~~~~~~~~----l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
.|++++++++.+ +..|++.+.+++++.++++ ...|+++.++++++++-
T Consensus 715 ~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv--~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 715 DPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQRI--YECYTWKIYAERLLTLG 768 (815)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHH
Confidence 478898888765 4579999999999998876 34699999999999765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.2e-11 Score=124.59 Aligned_cols=411 Identities=14% Similarity=0.144 Sum_probs=221.9
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002431 19 LEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR--FAECYGNMANAWKEKGDIDLAIRYYLVAIEL 96 (922)
Q Consensus 19 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 96 (922)
-..|++++..--+-+..|......+..+|+...-...|.+++..-|- ....|-.........+-.+-++..|++-++.
T Consensus 88 n~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 88 NNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 33445544433345678888899999999999999999999988774 3556666667777888889999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhCC
Q 002431 97 RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN-------PLLVDAHSNLGNLMKAQGLVQE---AYSCYLEALRIQP 166 (922)
Q Consensus 97 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~p 166 (922)
+|... ......+...+++++|.+.+...+..+ +.+...|..+..+..+.-+.-. ....++..+...+
T Consensus 168 ~P~~~---eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rft 244 (835)
T KOG2047|consen 168 APEAR---EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT 244 (835)
T ss_pred CHHHH---HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCc
Confidence 98754 445667788999999999888776532 2233333333333333221111 1112222333333
Q ss_pred Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------------------------------------------
Q 002431 167 TF-AIAWSNLAGLFMESGDLNRALQYYKEAVKL----------------------------------------------- 198 (922)
Q Consensus 167 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----------------------------------------------- 198 (922)
+. ...|..||..|.+.|.+++|...|++++..
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 22 233444444444444444444444444432
Q ss_pred --------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-hCCC------hhHHHhHHHHHHHcCC
Q 002431 199 --------------------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ-TRPN------AIAFGNLASTYYERGQ 251 (922)
Q Consensus 199 --------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~ 251 (922)
+|.+...|.....+ ..|+..+-+..|.+++. .+|. ...|..++..|...|+
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc
Confidence 23333333332222 23445555555555543 2332 3445555555555566
Q ss_pred hHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------------ChHHHHh
Q 002431 252 ADMAILYYKQAIGCDPRF----LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS------------------HPQALTN 309 (922)
Q Consensus 252 ~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~ 309 (922)
.+.|..+|+++.+..-.. ..+|..-|..-....+++.|+++.+.+...-.. +..+|..
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 666666655555432221 234555555555555555555555555432110 1224445
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccC--CCCHHHHHHHHHHHH---H
Q 002431 310 LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID--PLAADGLVNRGNTYK---E 384 (922)
Q Consensus 310 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~---~ 384 (922)
+++.....|-++.....|++.+.+.--.+....+.|..+....-+++|.+.|++.+.+. |...+.|...-..+. .
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555555555555555655555555553 233333333222221 2
Q ss_pred hCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002431 385 IGRVTDAIQDYIRAITIRPTM--AEAHANLASAYKDSGHVEAAIKSYKQALL 434 (922)
Q Consensus 385 ~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 434 (922)
..+.+.|...|++|++..|.. ..++...+..-.+-|-...|+.+|+++-.
T Consensus 563 g~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 563 GTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 234555555566665555421 12333344444445555555555555443
|
|
| >cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-15 Score=170.11 Aligned_cols=175 Identities=17% Similarity=0.083 Sum_probs=129.8
Q ss_pred CcCCCCCC--CCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhh-HHHHHHHHHHcCCCCCceEEcCC
Q 002431 703 KRSDYGLP--EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG-EMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 703 ~r~~~~l~--~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
+|+++|++ ++.++++.++|+ .|+.+.+++++.++.+.. .+|+++|.|+.. .+.+++...+. .++|+|.+.
T Consensus 284 l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~--~~lvi~G~g~~~~~~~~~~~~~~~---~~~v~~~~~ 358 (476)
T cd03791 284 LQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLELG--GQLVILGSGDPEYEEALRELAARY---PGRVAVLIG 358 (476)
T ss_pred HHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHHcC--cEEEEEecCCHHHHHHHHHHHHhC---CCcEEEEEe
Confidence 57888986 677888888876 599999999999987643 889999987532 34566665554 468887665
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCC------CCcccc--CCHHH
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGL------GEEMIV--NSMKE 848 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~------~~~~i~--~~~~~ 848 (922)
.+......+|+.+|++|.|+.+++ |++.+|||++|+|||+.....+..-+.. |. ++ ++. .|+++
T Consensus 359 ~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~------~~~~~~~~~G-~~~~~~~~~~ 431 (476)
T cd03791 359 YDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVID------YNEDTGEGTG-FVFEGYNADA 431 (476)
T ss_pred CCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeC------CcCCCCCCCe-EEeCCCCHHH
Confidence 555556678999999999999999 9999999999999996544433332221 11 23 332 47888
Q ss_pred HHHHHHHHhc---CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 849 YEERAVSLAL---DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 849 ~~~~~~~l~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
+++++.++.. +++.+.+++++..+. .|+++.+++++++.|+
T Consensus 432 l~~~i~~~l~~~~~~~~~~~~~~~~~~~-----~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 432 LLAALRRALALYRDPEAWRKLQRNAMAQ-----DFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHhcc-----CCChHHHHHHHHHHHh
Confidence 8888877664 677777777665442 4999999999999996
|
Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
| >cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.9e-15 Score=163.78 Aligned_cols=173 Identities=14% Similarity=0.097 Sum_probs=136.6
Q ss_pred CCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHH
Q 002431 705 SDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQE 782 (922)
Q Consensus 705 ~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~ 782 (922)
...+.+++.++++.+++. .|+.+.+++++.++.+. |+.+|+++|.|+. .+.+.+.....++ ++|.|.|.++.++
T Consensus 212 ~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~~~-~~~~~~~~~~~~~--~~v~~~g~~~~~~ 287 (394)
T cd03794 212 RKELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGDGPE-KEELKELAKALGL--DNVTFLGRVPKEE 287 (394)
T ss_pred hhccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCCccc-HHHHHHHHHHcCC--CcEEEeCCCChHH
Confidence 344555667788887765 59999999999998877 8999999998876 6677777677776 5799999999999
Q ss_pred HHHhccCCcEEecCCCCCC------hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc-CCHHHHHHHHHH
Q 002431 783 HIRRSSLADLFLDTPLCNA------HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-NSMKEYEERAVS 855 (922)
Q Consensus 783 ~~~~~~~~dv~l~~~~~~g------~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~-~~~~~~~~~~~~ 855 (922)
...+|+.+|+++.|+..++ +++++|||++|+|||+.+......-+.. |-.+.++. .|.+++++.+.+
T Consensus 288 ~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~------~~~g~~~~~~~~~~l~~~i~~ 361 (394)
T cd03794 288 LPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEE------AGAGLVVPPGDPEALAAAILE 361 (394)
T ss_pred HHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhcc------CCcceEeCCCCHHHHHHHHHH
Confidence 9999999999999976553 6678999999999998776544433321 12221333 489999999999
Q ss_pred HhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHH
Q 002431 856 LALDRQKLQALTNKLKSVRLTCPLFDTARWVKNL 889 (922)
Q Consensus 856 l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (922)
+..|++.+..++++.++... ..|+++.+++++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~ 393 (394)
T cd03794 362 LLDDPEERAEMGENGRRYVE--EKFSREKLAERL 393 (394)
T ss_pred HHhChHHHHHHHHHHHHHHH--HhhcHHHHHHhc
Confidence 99999999999999988763 359999888765
|
wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase. |
| >cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding | Back alignment and domain information |
|---|
Probab=99.62 E-value=5e-15 Score=163.34 Aligned_cols=161 Identities=15% Similarity=0.208 Sum_probs=129.6
Q ss_pred EEEEecCC--CCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 714 FIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 714 ~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
++++.++| ..|+.+.+++++.++.++.|+.+|.|+|.|+. ...+.....+.++ .++|.|.|. ..+....|+.+|
T Consensus 205 ~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~ad 280 (372)
T cd04949 205 HKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDE-EEKLKELIEELGL-EDYVFLKGY--TRDLDEVYQKAQ 280 (372)
T ss_pred CeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCch-HHHHHHHHHHcCC-cceEEEcCC--CCCHHHHHhhhh
Confidence 34455554 56999999999999999999999999999876 7778888889999 589999995 456777899999
Q ss_pred EEecCCCCCC-hhHHHHHHHcCCCeeeecCC-cchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHhcCHHHHHHHH
Q 002431 792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLE-KMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLALDRQKLQALT 867 (922)
Q Consensus 792 v~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~-~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~~d~~~~~~~~ 867 (922)
++|+|+.++| |++++|||++|+|||+.... .... ++ .-|-.+ ++++ |++++++++.++++|++.+..++
T Consensus 281 ~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~-----~v-~~~~~G-~lv~~~d~~~la~~i~~ll~~~~~~~~~~ 353 (372)
T cd04949 281 LSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGPSE-----II-EDGENG-YLVPKGDIEALAEAIIELLNDPKLLQKFS 353 (372)
T ss_pred EEEecccccccChHHHHHHhCCCCEEEecCCCCcHH-----Hc-ccCCCc-eEeCCCcHHHHHHHHHHHHcCHHHHHHHH
Confidence 9999999888 99999999999999976532 1111 11 125556 5555 89999999999999999999999
Q ss_pred HHHHhhcccCCCCChHHHHHH
Q 002431 868 NKLKSVRLTCPLFDTARWVKN 888 (922)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~ 888 (922)
++.++... .|+.+.++++
T Consensus 354 ~~a~~~~~---~~s~~~~~~~ 371 (372)
T cd04949 354 EAAYENAE---RYSEENVWEK 371 (372)
T ss_pred HHHHHHHH---HhhHHHHHhc
Confidence 99988643 4887776654
|
In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-12 Score=139.37 Aligned_cols=131 Identities=20% Similarity=0.242 Sum_probs=90.3
Q ss_pred hHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHH
Q 002431 237 IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME 316 (922)
Q Consensus 237 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 316 (922)
.+++.+++.|...|++++|++++++++...|..++.|...|.++...|++.+|.+.++.+..+++.|-.+....+..+.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 35566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHHHhcCCCCc-------hhh--hhHHHHHHHcCCHHHHHHHHHHHHcc
Q 002431 317 WNMLPAAASYYKATLAVTTGLS-------APF--NNLAVIYKQQGNYADAISCYNEVLRI 367 (922)
Q Consensus 317 ~~~~~~A~~~~~~a~~~~~~~~-------~~~--~~la~~~~~~g~~~~A~~~~~~al~~ 367 (922)
.|+.++|.+.+......+.+.. -.| ..-|.+|.+.|++..|++.|..+.+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777766544432110 012 23466667777777777766666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.5e-15 Score=141.65 Aligned_cols=161 Identities=16% Similarity=0.207 Sum_probs=131.7
Q ss_pred cCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhh-CCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCc
Q 002431 704 RSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRR-VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK 780 (922)
Q Consensus 704 r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~ 780 (922)
|...+.+++.++++.+++. .|+...+++++..+.++ .|+..|+++|.++. ...+...+...++ .++|.|.|..+.
T Consensus 6 ~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~-~~~~~~~~~~~~~-~~~i~~~~~~~~ 83 (172)
T PF00534_consen 6 REKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEY-KKELKNLIEKLNL-KENIIFLGYVPD 83 (172)
T ss_dssp HHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCH-HHHHHHHHHHTTC-GTTEEEEESHSH
T ss_pred HHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccc-ccccccccccccc-cccccccccccc
Confidence 4455677788888888876 49999999999998875 99999999996655 6778899999999 589999999888
Q ss_pred HHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHh
Q 002431 781 QEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLA 857 (922)
Q Consensus 781 ~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~ 857 (922)
.++..+|+.+||+|.|+.++| |++++|||++|+|||+.....+..-+.. +.++ ++. .|++++++.+.++.
T Consensus 84 ~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~------~~~g-~~~~~~~~~~l~~~i~~~l 156 (172)
T PF00534_consen 84 DELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIIND------GVNG-FLFDPNDIEELADAIEKLL 156 (172)
T ss_dssp HHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGT------TTSE-EEESTTSHHHHHHHHHHHH
T ss_pred cccccccccceeccccccccccccccccccccccceeeccccCCceeecc------ccce-EEeCCCCHHHHHHHHHHHH
Confidence 899999999999999998888 9999999999999998776555444432 4445 444 46799999999999
Q ss_pred cCHHHHHHHHHHHHhh
Q 002431 858 LDRQKLQALTNKLKSV 873 (922)
Q Consensus 858 ~d~~~~~~~~~~~~~~ 873 (922)
.|++.+..|+++.|++
T Consensus 157 ~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 157 NDPELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCC
Confidence 9999999999998874
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B .... |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-11 Score=122.63 Aligned_cols=287 Identities=17% Similarity=0.131 Sum_probs=133.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHH
Q 002431 42 IYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN-FADAWSNLASAYMRKGRLNEA 120 (922)
Q Consensus 42 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A 120 (922)
.-+..|+|.+|.+...+.-+..+....++..-+.+.-+.|+++.|-.++.++-+..++ ........+......|+++.|
T Consensus 93 ~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 93 LKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred HHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 3344455555555555555544444445555555555555555555555555555222 233444555555555555555
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---H-----HHHHHHHHHHHcCCHHHHHHHH
Q 002431 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA---I-----AWSNLAGLFMESGDLNRALQYY 192 (922)
Q Consensus 121 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~-----~~~~la~~~~~~g~~~~A~~~~ 192 (922)
.....++++..|.++.+......+|...|++.+...++.++-+..--+. . +|..+-.-....+..+.-...+
T Consensus 173 ~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 173 RENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 5555555555555555555555555555555555555554444321110 0 1111111111111111111222
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 002431 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEA 272 (922)
Q Consensus 193 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 272 (922)
+..-..-..++.+...++.-+..+|+.++|.++.++.++..-+.. .
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----------------------------------L 298 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----------------------------------L 298 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----------------------------------H
Confidence 222222223344444444444444444444444444444433322 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcC
Q 002431 273 YNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG 352 (922)
Q Consensus 273 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 352 (922)
... .-...-++...=++..++.++..|+++..+..+|.++.+.+.+.+|..+|+.+++..|+ ...+..+|.++.+.|
T Consensus 299 ~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g 375 (400)
T COG3071 299 CRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLG 375 (400)
T ss_pred HHH--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcC
Confidence 111 11123344445555555555555555555555555555555555555555555544433 233455555555556
Q ss_pred CHHHHHHHHHHHH
Q 002431 353 NYADAISCYNEVL 365 (922)
Q Consensus 353 ~~~~A~~~~~~al 365 (922)
+..+|.+.+++++
T Consensus 376 ~~~~A~~~r~e~L 388 (400)
T COG3071 376 EPEEAEQVRREAL 388 (400)
T ss_pred ChHHHHHHHHHHH
Confidence 6555555555555
|
|
| >cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-14 Score=154.95 Aligned_cols=150 Identities=14% Similarity=0.138 Sum_probs=110.0
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEE
Q 002431 714 FIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLF 793 (922)
Q Consensus 714 ~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~ 793 (922)
+++.+--...|+.+.+++++.++ | .+|+|+|+|+. .+.+++ +. .++|+|.|.++.++...+|..+|++
T Consensus 198 il~~G~~~~~K~~~~li~a~~~~----~-~~l~ivG~g~~-~~~l~~-----~~-~~~V~~~g~~~~~~~~~~~~~ad~~ 265 (351)
T cd03804 198 YLSVGRLVPYKRIDLAIEAFNKL----G-KRLVVIGDGPE-LDRLRA-----KA-GPNVTFLGRVSDEELRDLYARARAF 265 (351)
T ss_pred EEEEEcCccccChHHHHHHHHHC----C-CcEEEEECChh-HHHHHh-----hc-CCCEEEecCCCHHHHHHHHHhCCEE
Confidence 34333333569999999998764 5 78999999875 555554 55 5899999999999999999999999
Q ss_pred ecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccc-cCCHHHHHHHHHHHhcCHH-HHHHHHHHH
Q 002431 794 LDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI-VNSMKEYEERAVSLALDRQ-KLQALTNKL 870 (922)
Q Consensus 794 l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i-~~~~~~~~~~~~~l~~d~~-~~~~~~~~~ 870 (922)
|.|+. +| |++++|||+||+|||+........-+.. |-.+.++ ..|++++++.+..+.+|++ .++.+++..
T Consensus 266 v~ps~-e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~------~~~G~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~ 338 (351)
T cd03804 266 LFPAE-EDFGIVPVEAMASGTPVIAYGKGGALETVID------GVTGILFEEQTVESLAAAVERFEKNEDFDPQAIRAHA 338 (351)
T ss_pred EECCc-CCCCchHHHHHHcCCCEEEeCCCCCcceeeC------CCCEEEeCCCCHHHHHHHHHHHHhCcccCHHHHHHHH
Confidence 99988 77 9999999999999997654332222211 2233133 2588999999999999984 444444433
Q ss_pred HhhcccCCCCChHHHHHHH
Q 002431 871 KSVRLTCPLFDTARWVKNL 889 (922)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~ 889 (922)
+ .|+.++|.+++
T Consensus 339 ~-------~~~~~~~~~~~ 350 (351)
T cd03804 339 E-------RFSESRFREKI 350 (351)
T ss_pred H-------hcCHHHHHHHh
Confidence 2 28999988875
|
wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-11 Score=122.59 Aligned_cols=292 Identities=16% Similarity=0.082 Sum_probs=216.7
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR-FAECYGNMANAWKEKG 81 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g 81 (922)
...|..-+..|+|.+|.+...+.-+..+....++..-+.+.-+.|+++.|-.++.++-+..++ .......++......|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 345666778899999999999988877877888888899999999999999999999988544 4667888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHHcCCHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVD--------AHSNLGNLMKAQGLVQE 153 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------~~~~la~~~~~~g~~~~ 153 (922)
+++.|..-..++++..|.++.+......+|.+.|++.+...++.++.+..--+.. ++..+-+-....+..+.
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 9999999999999999999999999999999999999999999998876532222 11111111111222222
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002431 154 AYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233 (922)
Q Consensus 154 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 233 (922)
-...++..-..-..++.....++.-+...|+.++|.++.+++++..-+. .....+ -...-++...-++..++.++..
T Consensus 248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~L~~~~--~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-RLCRLI--PRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-hHHHHH--hhcCCCCchHHHHHHHHHHHhC
Confidence 2234444433444567777888999999999999999999999876543 222111 2234566677777777777776
Q ss_pred CC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 234 PN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298 (922)
Q Consensus 234 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 298 (922)
|+ +..+..+|..+.+.+.|.+|..+|+.+++..|+.. .+..+|.++.+.|+..+|.+..++++.
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 66 66677777777777777777777777776666543 666777777777777777777777664
|
|
| >PRK13609 diacylglycerol glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=152.75 Aligned_cols=176 Identities=13% Similarity=0.064 Sum_probs=123.8
Q ss_pred CcCCCCCCCCcE-EEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEec-CChhhHHHHHHHHHHcCCCCCceEEcCCC
Q 002431 703 KRSDYGLPEDKF-IFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLR-FPAAGEMRLRAYAVAQGVQPDQIIFTDVA 778 (922)
Q Consensus 703 ~r~~~~l~~~~~-~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~-~~~~~~~~l~~~~~~~g~~~~rv~f~~~~ 778 (922)
.|.++|++++.. ++...++. .|+...+++++. ..|+.+++++| .++...+.+++.+.+.+ ++|+|+|++
T Consensus 192 ~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l~----~~~~~~~viv~G~~~~~~~~l~~~~~~~~---~~v~~~g~~ 264 (380)
T PRK13609 192 IYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSLM----SVPDLQVVVVCGKNEALKQSLEDLQETNP---DALKVFGYV 264 (380)
T ss_pred HHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHHh----hCCCcEEEEEeCCCHHHHHHHHHHHhcCC---CcEEEEech
Confidence 678899986643 33333433 477777777654 34888887764 34333677777776554 689999986
Q ss_pred CcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 002431 779 MKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL 858 (922)
Q Consensus 779 ~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~ 858 (922)
+ +...+|+.+|+++. ..||+|++|||++|+|||+.....-........+...|. . ++..|++++.+.+.++.+
T Consensus 265 ~--~~~~l~~~aD~~v~---~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~-~-~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 265 E--NIDELFRVTSCMIT---KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGA-A-VVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred h--hHHHHHHhccEEEe---CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCc-E-EEECCHHHHHHHHHHHHC
Confidence 4 45567889999984 357899999999999999854211111222234444455 2 456799999999999999
Q ss_pred CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 859 DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 859 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
|++.+++++++.++.. ..++.+.+++.+++.+..
T Consensus 338 ~~~~~~~m~~~~~~~~---~~~s~~~i~~~i~~~~~~ 371 (380)
T PRK13609 338 DDMKLLQMKEAMKSLY---LPEPADHIVDDILAENHV 371 (380)
T ss_pred CHHHHHHHHHHHHHhC---CCchHHHHHHHHHHhhhh
Confidence 9999999999887753 337999999998887654
|
|
| >PHA01633 putative glycosyl transferase group 1 | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-14 Score=146.49 Aligned_cols=171 Identities=12% Similarity=0.130 Sum_probs=120.4
Q ss_pred CcCCCCCC-CCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCC----eEEEEecCChhhHHHHHHHHHHcCCCCCceEEc
Q 002431 703 KRSDYGLP-EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPN----SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFT 775 (922)
Q Consensus 703 ~r~~~~l~-~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~ 775 (922)
.|++++.+ ++.++|+.++|+ .|+++.++++|.++.++.|+ .+|+++|.+ ...++++ .++|.|+
T Consensus 137 ~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~---------~~~~l~l-~~~V~f~ 206 (335)
T PHA01633 137 LKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK---------QFTQLEV-PANVHFV 206 (335)
T ss_pred HHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH---------HHHHcCC-CCcEEEE
Confidence 44445543 355778888875 59999999999999888885 477777631 2356788 5899999
Q ss_pred ---CCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHH--HHH-H----------hcCCC
Q 002431 776 ---DVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG--SLC-L----------ATGLG 838 (922)
Q Consensus 776 ---~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~--~~~-~----------~~g~~ 838 (922)
|.++..+...+|+.+|+||.||.+|| |++++|||+||+|||+...+.+.+-+|. ..| . .-|.
T Consensus 207 g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~- 285 (335)
T PHA01633 207 AEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQ- 285 (335)
T ss_pred ecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCc-
Confidence 55677889999999999999999999 9999999999999998866655554441 011 0 0011
Q ss_pred Cccc-cCCHHHHHHHHHHHh--cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 002431 839 EEMI-VNSMKEYEERAVSLA--LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 890 (922)
Q Consensus 839 ~~~i-~~~~~~~~~~~~~l~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 890 (922)
.+++ ..|++++++++.++. .|++.+ +..+++... .||++...++++
T Consensus 286 g~~~~~~d~~~la~ai~~~~~~~~~~~~---~~~~~~~a~---~f~~~~~~~~~~ 334 (335)
T PHA01633 286 KWKIHKFQIEDMANAIILAFELQDREER---SMKLKELAK---KYDIRNLYTRFL 334 (335)
T ss_pred eeeecCCCHHHHHHHHHHHHhccChhhh---hHHHHHHHH---hcCHHHHHHHhh
Confidence 1012 248889988888773 344433 444555443 399988887765
|
|
| >PLN02275 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=150.26 Aligned_cols=133 Identities=11% Similarity=0.032 Sum_probs=102.5
Q ss_pred EEEEecCC--CCCCCHHHHHHHHHHH-----------------hhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEE
Q 002431 714 FIFACFNQ--LYKMDPEIFNTWCNIL-----------------RRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIF 774 (922)
Q Consensus 714 ~~~~~~~~--~~K~~~~~~~~~~~il-----------------~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f 774 (922)
++++..+| ..|+.+.+++++..+. +..|+.+|+|+|+|+. ++.+++.++++|++ + |+|
T Consensus 214 ~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~-~~~l~~~~~~~~l~-~-v~~ 290 (371)
T PLN02275 214 ALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQ-KAMYEEKISRLNLR-H-VAF 290 (371)
T ss_pred EEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCCC-HHHHHHHHHHcCCC-c-eEE
Confidence 45556666 4699999999988764 2368999999999987 89999999999994 5 777
Q ss_pred cC-CCCcHHHHHhccCCcEEecCC--C-CCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHH
Q 002431 775 TD-VAMKQEHIRRSSLADLFLDTP--L-CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEY 849 (922)
Q Consensus 775 ~~-~~~~~~~~~~~~~~dv~l~~~--~-~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~ 849 (922)
.+ .++.++...+|+.+|||+.|+ . .+| |++++|||+||+|||+........-+ . -|.++ +++.|++++
T Consensus 291 ~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv-----~-~g~~G-~lv~~~~~l 363 (371)
T PLN02275 291 RTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELV-----K-DGKNG-LLFSSSSEL 363 (371)
T ss_pred EcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHc-----c-CCCCe-EEECCHHHH
Confidence 55 689999999999999999643 2 256 99999999999999976543322222 1 16666 666788888
Q ss_pred HHHHHHH
Q 002431 850 EERAVSL 856 (922)
Q Consensus 850 ~~~~~~l 856 (922)
++++.+|
T Consensus 364 a~~i~~l 370 (371)
T PLN02275 364 ADQLLEL 370 (371)
T ss_pred HHHHHHh
Confidence 8877765
|
|
| >PLN02605 monogalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=150.21 Aligned_cols=176 Identities=14% Similarity=0.066 Sum_probs=125.3
Q ss_pred CCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHh----hCCCeE-EEEecCChhhHHHHHHHHHHcCCCCCceEE
Q 002431 702 PKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILR----RVPNSA-LWLLRFPAAGEMRLRAYAVAQGVQPDQIIF 774 (922)
Q Consensus 702 ~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~----~~p~~~-l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f 774 (922)
..|+++|++++.++++.+++. .|....+++++.+++. ..|+.+ ++++|.++...+.|++ ... .++|.|
T Consensus 195 ~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~----~~~-~~~v~~ 269 (382)
T PLN02605 195 ELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLES----RDW-KIPVKV 269 (382)
T ss_pred HHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHHHHHHHHh----hcc-cCCeEE
Confidence 478899999888877777754 5888999998887652 245554 5666766432444443 333 357999
Q ss_pred cCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHH
Q 002431 775 TDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAV 854 (922)
Q Consensus 775 ~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~ 854 (922)
+|+++ +...+|+.+|+++.+ .||.|++|||+||+|||+.+-....+..+...+...|.. +...|++++++++.
T Consensus 270 ~G~~~--~~~~l~~aaDv~V~~---~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g--~~~~~~~~la~~i~ 342 (382)
T PLN02605 270 RGFVT--NMEEWMGACDCIITK---AGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFG--AFSESPKEIARIVA 342 (382)
T ss_pred Eeccc--cHHHHHHhCCEEEEC---CCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCce--eecCCHHHHHHHHH
Confidence 99975 677789999999964 378899999999999998753222223334445555663 34589999999999
Q ss_pred HHhcC-HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHH
Q 002431 855 SLALD-RQKLQALTNKLKSVRLTCPLFDTARWVKNLERS 892 (922)
Q Consensus 855 ~l~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 892 (922)
+|..| ++.+++|+++.++... ..+.+..++.+.+.
T Consensus 343 ~ll~~~~~~~~~m~~~~~~~~~---~~a~~~i~~~l~~~ 378 (382)
T PLN02605 343 EWFGDKSDELEAMSENALKLAR---PEAVFDIVHDLHEL 378 (382)
T ss_pred HHHcCCHHHHHHHHHHHHHhcC---CchHHHHHHHHHHH
Confidence 99988 9999999999988642 25566666665543
|
|
| >PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-13 Score=148.91 Aligned_cols=319 Identities=14% Similarity=0.112 Sum_probs=188.1
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC--C---CC-----------
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS--A---MS----------- 600 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~----------- 600 (922)
+||-+++...+.|- +....+.+.+.+.++||++++..... ..+.++..+..++.++ + .+
T Consensus 2 ~~i~i~~~g~gG~~--~~~~~la~~L~~~g~ev~vv~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (357)
T PRK00726 2 KKILLAGGGTGGHV--FPALALAEELKKRGWEVLYLGTARGM---EARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKL 76 (357)
T ss_pred cEEEEEcCcchHhh--hHHHHHHHHHHhCCCEEEEEECCCch---hhhccccCCCcEEEEeccCcCCCChHHHHHHHHHH
Confidence 56777775554333 35557777777778999988764311 1222333343343332 1 11
Q ss_pred ---HHHHHHHHHhCCCeEEEcCCCcCCCCchhh---hhc--CCCceEEeccc-cCCCCCCCcccEEEecCccCCcCccC-
Q 002431 601 ---SDMIAKLINEDKIQILINLNGYTKGARNEI---FAM--QPAPIQVSYMG-FPGTTGASYIDYLVTDEFVSPLRYAH- 670 (922)
Q Consensus 601 ---~~~~~~~i~~~~~dil~~~~~~~~~~~~~~---~~~--~~apvq~~~~g-~~~t~g~~~~d~~~~d~~~~~~~~~~- 670 (922)
...+.+.|++.++||+ |+++....+ ++. ...|+.++-.. .|+ ....+.|..+|.+++......
T Consensus 77 ~~~~~~~~~~ik~~~pDvv-----~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~--~~~r~~~~~~d~ii~~~~~~~~ 149 (357)
T PRK00726 77 LKGVLQARKILKRFKPDVV-----VGFGGYVSGPGGLAARLLGIPLVIHEQNAVPG--LANKLLARFAKKVATAFPGAFP 149 (357)
T ss_pred HHHHHHHHHHHHhcCCCEE-----EECCCcchhHHHHHHHHcCCCEEEEcCCCCcc--HHHHHHHHHhchheECchhhhh
Confidence 1345778889999999 555432222 222 23466543211 111 011223345566554433110
Q ss_pred -CCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHH-HHHHHHHhhCCCeEEE
Q 002431 671 -IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIF-NTWCNILRRVPNSALW 746 (922)
Q Consensus 671 -~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~-~~~~~il~~~p~~~l~ 746 (922)
....++..+|+.. .. ....+ ...+.+++++++.++++.+++. .|....++ +++.++.+. | ..++
T Consensus 150 ~~~~~~i~vi~n~v------~~--~~~~~--~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~~~~ 217 (357)
T PRK00726 150 EFFKPKAVVTGNPV------RE--EILAL--AAPPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L-QVIH 217 (357)
T ss_pred ccCCCCEEEECCCC------Ch--Hhhcc--cchhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-EEEE
Confidence 1112333333221 11 11111 1233456777676776666654 35544444 888776543 5 5667
Q ss_pred EecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcch--
Q 002431 747 LLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMA-- 824 (922)
Q Consensus 747 ~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~-- 824 (922)
++|.|+ .+.+.+... .|+ + |.|.|++ .++..++..+|+++.++ |++|++|||++|+|||+.+.....
T Consensus 218 ~~G~g~--~~~~~~~~~-~~~--~-v~~~g~~--~~~~~~~~~~d~~i~~~---g~~~~~Ea~~~g~Pvv~~~~~~~~~~ 286 (357)
T PRK00726 218 QTGKGD--LEEVRAAYA-AGI--N-AEVVPFI--DDMAAAYAAADLVICRA---GASTVAELAAAGLPAILVPLPHAADD 286 (357)
T ss_pred EcCCCc--HHHHHHHhh-cCC--c-EEEeehH--hhHHHHHHhCCEEEECC---CHHHHHHHHHhCCCEEEecCCCCCcC
Confidence 788875 355555555 777 2 9999986 56777889999999643 679999999999999987642111
Q ss_pred -hhhHHHHHHhcCCCCcccc-CC--HHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 825 -TRVAGSLCLATGLGEEMIV-NS--MKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 825 -~r~~~~~~~~~g~~~~~i~-~~--~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
....+..+...|..- ++. .| ++++++++.++.+|++.++.+++..++.. ..++.+++++.+++..+
T Consensus 287 ~~~~~~~~i~~~~~g~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 287 HQTANARALVDAGAAL-LIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALG---KPDAAERLADLIEELAR 356 (357)
T ss_pred cHHHHHHHHHHCCCEE-EEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC---CcCHHHHHHHHHHHHhh
Confidence 111234555556643 443 34 89999999999999999999999998864 34888888888776543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.7e-13 Score=135.13 Aligned_cols=186 Identities=20% Similarity=0.148 Sum_probs=131.3
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH---HHHh
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL---EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ---ALTN 309 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 309 (922)
...++.+|..+...|++++|+..+++++..+|++. .+++.+|.++...|++++|+..++++++..|+++. +++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 66777777777777777777777777777777654 46677777777777777777777777777776655 5677
Q ss_pred HHHHHHHc--------CChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 002431 310 LGNIYMEW--------NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT 381 (922)
Q Consensus 310 la~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 381 (922)
+|.++... |++++|.+.|++++..+|++...+..+..+... ... .......+|..
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~~~-------------~~~~~~~~a~~ 175 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----RNR-------------LAGKELYVARF 175 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----HHH-------------HHHHHHHHHHH
Confidence 77777665 566677777777777666665443222211110 000 01123467888
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 382 YKEIGRVTDAIQDYIRAITIRPTM---AEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 382 ~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
+...|++.+|+..++++++..|+. +.+++.+|.++.+.|++++|..+++.+....|+
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 888899999999999999886653 578889999999999999999988887766653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-12 Score=132.90 Aligned_cols=188 Identities=19% Similarity=0.127 Sum_probs=124.2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH---H
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA---ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD---A 103 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~ 103 (922)
+..+..++.+|..++..|++++|+..|+++++.+|.++ .+++.+|.++...|++++|+..|+++++..|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34577788888888888888888888888888877764 56778888888888888888888888888776554 5
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 002431 104 WSNLASAYMRK--------GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNL 175 (922)
Q Consensus 104 ~~~la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 175 (922)
++.+|.++... |++++|++.+++++..+|++..+...+..+....+ . .......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHHHH
Confidence 77777777765 66777777777777777776554432222211100 0 01112355
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002431 176 AGLFMESGDLNRALQYYKEAVKLKPTF---PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 234 (922)
Q Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 234 (922)
+..+...|++.+|+..++++++..|+. +.+++.++.++...|++++|..+++.+....|
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 666666677777777777766665543 35666666666666776666666666555443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.4e-12 Score=118.98 Aligned_cols=187 Identities=22% Similarity=0.162 Sum_probs=166.9
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhH
Q 002431 265 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 344 (922)
Q Consensus 265 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 344 (922)
..++....+-.+..+....|+.+.|..++++.....|.+..+....|..+...|++++|+++|+..++.+|.+..++...
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK 126 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK 126 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence 34555556667777788889999999999998888899999999999999999999999999999999999999999888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC---C
Q 002431 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG---H 421 (922)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~ 421 (922)
..+...+|+.-+|++.+.+.++..+.+.++|..++.+|...|++++|.-++++++-+.|.++..+..++.+++-+| +
T Consensus 127 lAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 8888899999999999999999999999999999999999999999999999999999999999999999988876 7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHhhc
Q 002431 422 VEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451 (922)
Q Consensus 422 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 451 (922)
++-|.++|.++++++|.+..+++.+..+..
T Consensus 207 ~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 207 LELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 788999999999999988888887765543
|
|
| >PHA01630 putative group 1 glycosyl transferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-13 Score=144.22 Aligned_cols=163 Identities=11% Similarity=0.061 Sum_probs=118.1
Q ss_pred cEEEEecCC--CCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 713 KFIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 713 ~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
.++++..++ ..|+.+.++++|+.+.++.|+.+++++|+++. ..++ .++. . +.|.++.++...+|+.+
T Consensus 142 ~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~-~~~l------~~~~-~---~~~~v~~~~l~~~y~~a 210 (331)
T PHA01630 142 PCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNML-DPRL------FGLN-G---VKTPLPDDDIYSLFAGC 210 (331)
T ss_pred CEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCccc-chhh------cccc-c---eeccCCHHHHHHHHHhC
Confidence 345544444 57999999999999998889999999996643 2222 2341 2 24557889999999999
Q ss_pred cEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCC--------------------CccccCCHHHH
Q 002431 791 DLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLG--------------------EEMIVNSMKEY 849 (922)
Q Consensus 791 dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~--------------------~~~i~~~~~~~ 849 (922)
|||+.||.++| |++.+|||+||+|||+.....+..-+.. |.+ +.++..|.++.
T Consensus 211 Dv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~------~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~ 284 (331)
T PHA01630 211 DILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLS------NLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDA 284 (331)
T ss_pred CEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccC------CCceEEeeecccccccccCCcccccccCCCHHHH
Confidence 99999999999 9999999999999997654333222211 111 11334577888
Q ss_pred HHHHHHHhcC---HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 850 EERAVSLALD---RQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 850 ~~~~~~l~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
.+.+++++.| ++.++.++.+.+... ..||++..++++++.|++
T Consensus 285 ~~~ii~~l~~~~~~~~~~~~~~~~~~~~---~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 285 YQKLLEALANWTPEKKKENLEGRAILYR---ENYSYNAIAKMWEKILEK 330 (331)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhc
Confidence 8999998887 455555565555443 359999999999999964
|
|
| >cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.8e-13 Score=145.55 Aligned_cols=302 Identities=14% Similarity=0.119 Sum_probs=173.7
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC--C---CC------------
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS--A---MS------------ 600 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~------------ 600 (922)
||-+..+..+.|- +....+.+.+.+.++||++++...... ...+......++.++ . ..
T Consensus 1 ~~~~~~~~~gG~~--~~~~~la~~l~~~G~ev~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (350)
T cd03785 1 RILIAGGGTGGHI--FPALALAEELRERGAEVLFLGTKRGLE---ARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLL 75 (350)
T ss_pred CEEEEecCchhhh--hHHHHHHHHHHhCCCEEEEEECCCcch---hhcccccCCceEEEEecCcCCCChHHHHHHHHHHH
Confidence 3444554444333 355577788888889999887543211 111222222222221 1 11
Q ss_pred --HHHHHHHHHhCCCeEEEcCCCcCCCCchhh----hh-cCCCceEEeccccCCCCCC-CcccEEEecCccCCcCccCCC
Q 002431 601 --SDMIAKLINEDKIQILINLNGYTKGARNEI----FA-MQPAPIQVSYMGFPGTTGA-SYIDYLVTDEFVSPLRYAHIY 672 (922)
Q Consensus 601 --~~~~~~~i~~~~~dil~~~~~~~~~~~~~~----~~-~~~apvq~~~~g~~~t~g~-~~~d~~~~d~~~~~~~~~~~~ 672 (922)
...+.+.|++.++||+| +++....+ .+ ....|+.+.-.+ ...+. ..+-+..+|.+++++.....+
T Consensus 76 ~~~~~~~~~i~~~~pDvI~-----~~~~~~~~~~~~~a~~~~~p~v~~~~~--~~~~~~~~~~~~~~~~vi~~s~~~~~~ 148 (350)
T cd03785 76 KGVLQARKILKKFKPDVVV-----GFGGYVSGPVGLAAKLLGIPLVIHEQN--AVPGLANRLLARFADRVALSFPETAKY 148 (350)
T ss_pred HHHHHHHHHHHhcCCCEEE-----ECCCCcchHHHHHHHHhCCCEEEEcCC--CCccHHHHHHHHhhCEEEEcchhhhhc
Confidence 12467888999999995 43322221 12 123577553111 11111 111223356666665443221
Q ss_pred --ccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHH-HHHHHHHHhhCCCeE-EE
Q 002431 673 --SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEI-FNTWCNILRRVPNSA-LW 746 (922)
Q Consensus 673 --~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~-~~~~~~il~~~p~~~-l~ 746 (922)
.+++..+|+... . ....+ .+.|.+++++++.++++.+++. .|....+ ++++..+. + ++.. ++
T Consensus 149 ~~~~~~~~i~n~v~------~--~~~~~--~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~-~-~~~~~~~ 216 (350)
T cd03785 149 FPKDKAVVTGNPVR------E--EILAL--DRERARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELL-R-KRLQVIH 216 (350)
T ss_pred CCCCcEEEECCCCc------h--HHhhh--hhhHHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhh-c-cCeEEEE
Confidence 334444443211 0 11111 1127788888887777666543 3554444 46665553 2 4555 45
Q ss_pred EecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcc---
Q 002431 747 LLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM--- 823 (922)
Q Consensus 747 ~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~--- 823 (922)
++|.+ . .+.+++.++++ .++|.|.|++ .+...+|..+|+++.++ |++|++|||++|+|||+.+....
T Consensus 217 i~G~g-~-~~~l~~~~~~~---~~~v~~~g~~--~~~~~~l~~ad~~v~~s---g~~t~~Eam~~G~Pvv~~~~~~~~~~ 286 (350)
T cd03785 217 QTGKG-D-LEEVKKAYEEL---GVNYEVFPFI--DDMAAAYAAADLVISRA---GASTVAELAALGLPAILIPLPYAADD 286 (350)
T ss_pred EcCCc-c-HHHHHHHHhcc---CCCeEEeehh--hhHHHHHHhcCEEEECC---CHhHHHHHHHhCCCEEEeecCCCCCC
Confidence 66776 3 67788877765 3789999985 67778899999999543 67899999999999998653221
Q ss_pred hhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002431 824 ATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (922)
Q Consensus 824 ~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~ 874 (922)
.....+..+...|..- ++.. |++++++++..+..|++.++.++++.++..
T Consensus 287 ~~~~~~~~l~~~g~g~-~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 339 (350)
T cd03785 287 HQTANARALVKAGAAV-LIPQEELTPERLAAALLELLSDPERLKAMAEAARSLA 339 (350)
T ss_pred cHHHhHHHHHhCCCEE-EEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 1111124455556544 4442 799999999999999999999999988764
|
It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-12 Score=145.77 Aligned_cols=222 Identities=13% Similarity=0.008 Sum_probs=135.1
Q ss_pred hCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002431 28 RNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL 107 (922)
Q Consensus 28 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 107 (922)
.+|.+..++..++..+...+++++|+..++..++..|+....++.+|.++.+.+++.++..+ .++...+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~------ 97 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL------ 97 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc------
Confidence 45788899999999999999999999999999999999999999999999999887776665 5544433322
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHH
Q 002431 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187 (922)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 187 (922)
++ .+.+.+...+...+.+..+++.+|.+|-+.|+.++|...|+++++.+|+++.+++++|..|... +.++
T Consensus 98 --------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 98 --------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred --------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 22 2333333333334444455555555555555555555555555555555555555555555555 5555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---------------------hhHHHhHHHHH
Q 002431 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---------------------AIAFGNLASTY 246 (922)
Q Consensus 188 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---------------------~~~~~~l~~~~ 246 (922)
|++++.+++.. +...+++.++.+++.+++...|+ ...+.-+-..|
T Consensus 168 A~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 168 AITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 55555555443 33344555555555555555444 12222233344
Q ss_pred HHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 247 YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALK 281 (922)
Q Consensus 247 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 281 (922)
...++|++++.+++.+++.+|.+..+...++.+|.
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 44455555555555555555555555555555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6e-13 Score=122.65 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=102.3
Q ss_pred HHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 002431 324 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403 (922)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 403 (922)
..+|+++++.+|++ +..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45667777777664 556788888888888888888888888888888888888888888888888888888888888
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhh
Q 002431 404 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450 (922)
Q Consensus 404 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 450 (922)
+++.+++++|.++...|++++|+..|+++++..|+++..+.+...+.
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 88888888888888888888888888888888888888876655443
|
|
| >TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=143.87 Aligned_cols=320 Identities=13% Similarity=0.162 Sum_probs=191.1
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCC-CeEEEEEecCCCCChHHHHHHHhccC----ceEECCC--CC--------H
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEWRQRTQSEAE----HFVDVSA--MS--------S 601 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~--------~ 601 (922)
+||.++.+ ..|-.-.+.++++.+.+. .|++.+..++... . ..+.+..... ....+.+ -+ .
T Consensus 1 ~~i~~~~g---tr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~-~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 75 (365)
T TIGR00236 1 LKVSIVLG---TRPEAIKMAPLIRALKKYPEIDSYVIVTAQHR-E-MLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNML 75 (365)
T ss_pred CeEEEEEe---cCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCH-H-HHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHH
Confidence 46777664 466667888999988764 6888888888654 2 3333333332 1123322 12 2
Q ss_pred HHHHHHHHhCCCeEEEcCCCcCCCCchhhhh------cCCCceEEeccccCCCCCC----C-ccc----EEEecCccCCc
Q 002431 602 DMIAKLINEDKIQILINLNGYTKGARNEIFA------MQPAPIQVSYMGFPGTTGA----S-YID----YLVTDEFVSPL 666 (922)
Q Consensus 602 ~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~------~~~apvq~~~~g~~~t~g~----~-~~d----~~~~d~~~~~~ 666 (922)
..+.+.+++.++||+ |++|.+...++ ....|+.....|- .|.+. + .+. ..++|.+++|+
T Consensus 76 ~~l~~~l~~~~pDiv-----~~~gd~~~~la~a~aa~~~~ipv~h~~~g~-~s~~~~~~~~~~~~r~~~~~~ad~~~~~s 149 (365)
T TIGR00236 76 EGLEELLLEEKPDIV-----LVQGDTTTTLAGALAAFYLQIPVGHVEAGL-RTGDRYSPMPEEINRQLTGHIADLHFAPT 149 (365)
T ss_pred HHHHHHHHHcCCCEE-----EEeCCchHHHHHHHHHHHhCCCEEEEeCCC-CcCCCCCCCccHHHHHHHHHHHHhccCCC
Confidence 468889999999999 88887553332 2335875433222 22111 1 110 11467777776
Q ss_pred CccC-------CCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC---CCCCHHHHHHHHHH
Q 002431 667 RYAH-------IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL---YKMDPEIFNTWCNI 736 (922)
Q Consensus 667 ~~~~-------~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~---~K~~~~~~~~~~~i 736 (922)
+... .-.+++..+++..+.... ...........++++|. ++.+++++..|. .|+.+.+++++.++
T Consensus 150 ~~~~~~l~~~G~~~~~I~vign~~~d~~~----~~~~~~~~~~~~~~~~~-~~~~vl~~~hr~~~~~k~~~~ll~a~~~l 224 (365)
T TIGR00236 150 EQAKDNLLRENVKADSIFVTGNTVIDALL----TNVEIAYSSPVLSEFGE-DKRYILLTLHRRENVGEPLENIFKAIREI 224 (365)
T ss_pred HHHHHHHHHcCCCcccEEEeCChHHHHHH----HHHhhccchhHHHhcCC-CCCEEEEecCchhhhhhHHHHHHHHHHHH
Confidence 6422 112233333332211000 00000111235566764 344666666543 37899999999999
Q ss_pred HhhCCCeEEEEecCC-hhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCe
Q 002431 737 LRRVPNSALWLLRFP-AAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPM 815 (922)
Q Consensus 737 l~~~p~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pv 815 (922)
.++.|+.++++.+.+ +..... ..+..+. .++|.|.|..+..+++.++..+|+++.++ | ..++|||++|+||
T Consensus 225 ~~~~~~~~~vi~~~~~~~~~~~---~~~~~~~-~~~v~~~~~~~~~~~~~~l~~ad~vv~~S---g-~~~~EA~a~g~Pv 296 (365)
T TIGR00236 225 VEEFEDVQIVYPVHLNPVVREP---LHKHLGD-SKRVHLIEPLEYLDFLNLAANSHLILTDS---G-GVQEEAPSLGKPV 296 (365)
T ss_pred HHHCCCCEEEEECCCChHHHHH---HHHHhCC-CCCEEEECCCChHHHHHHHHhCCEEEECC---h-hHHHHHHHcCCCE
Confidence 888899988887544 221222 2334566 47899999999999999999999998655 3 3469999999999
Q ss_pred eeec--CCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHH
Q 002431 816 ITLP--LEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLER 891 (922)
Q Consensus 816 v~~~--~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 891 (922)
|+.. |.... +. ..|..- ++..|++++++++.++.+|++.+.+++..... . ......++.++.++.
T Consensus 297 I~~~~~~~~~e------~~-~~g~~~-lv~~d~~~i~~ai~~ll~~~~~~~~~~~~~~~-~--g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 297 LVLRDTTERPE------TV-EAGTNK-LVGTDKENITKAAKRLLTDPDEYKKMSNASNP-Y--GDGEASERIVEELLN 363 (365)
T ss_pred EECCCCCCChH------HH-hcCceE-EeCCCHHHHHHHHHHHHhChHHHHHhhhcCCC-C--cCchHHHHHHHHHHh
Confidence 9863 22111 11 125433 55579999999999999999888887665421 1 112344555555544
|
Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.1e-12 Score=142.87 Aligned_cols=243 Identities=12% Similarity=0.064 Sum_probs=181.0
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHH
Q 002431 164 IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLA 243 (922)
Q Consensus 164 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~ 243 (922)
.+|.+..++..++..+...+++++|++.++..++..|+....++.+|.++...+++.++..+ .++..
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~----------- 92 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS----------- 92 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-----------
Confidence 36778888888888888888888888888888888888888888888888888886666554 33333
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHH
Q 002431 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA 323 (922)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 323 (922)
.....++ .+++++...+...+.+..+++.+|.+|.++|+.++|...|+++++.+|+++.+++++|..|... +.++|
T Consensus 93 --~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 --FSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred --cccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 2333444 4555555566567777778999999999999999999999999999999999999999999888 99999
Q ss_pred HHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 002431 324 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403 (922)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 403 (922)
..++.+++.. +...+++.++.+++.+.+..+|++.+.+..+-......-....+
T Consensus 169 ~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~------------ 222 (906)
T PRK14720 169 ITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRL------------ 222 (906)
T ss_pred HHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchh------------
Confidence 9999988764 66677899999999999999988877655543322222111111
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhc
Q 002431 404 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451 (922)
Q Consensus 404 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 451 (922)
...+.-+-..|...+++++++.+++.+++.+|++..+...++.++.
T Consensus 223 --~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 --VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred --HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3344455566677777777777777777777777777777777665
|
|
| >PRK13608 diacylglycerol glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-12 Score=141.99 Aligned_cols=179 Identities=15% Similarity=0.088 Sum_probs=128.0
Q ss_pred CcCCCCCCCCcE-EEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEe-cCChhhHHHHHHHHHHcCCCCCceEEcCCC
Q 002431 703 KRSDYGLPEDKF-IFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLL-RFPAAGEMRLRAYAVAQGVQPDQIIFTDVA 778 (922)
Q Consensus 703 ~r~~~~l~~~~~-~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~-~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~ 778 (922)
.|.++|++++.. ++...++. .|+...+++++ ++..|+.+++++ |.++...+.+++. .+. .++|.|.|++
T Consensus 192 ~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~---~~~~~~~~~vvv~G~~~~l~~~l~~~---~~~-~~~v~~~G~~ 264 (391)
T PRK13608 192 WLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDI---LAKSANAQVVMICGKSKELKRSLTAK---FKS-NENVLILGYT 264 (391)
T ss_pred HHHHcCCCCCCCEEEEECCCcccchhHHHHHHHH---HhcCCCceEEEEcCCCHHHHHHHHHH---hcc-CCCeEEEecc
Confidence 566789976654 34444544 48888888875 345577888666 4332223344432 344 3689999986
Q ss_pred CcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 002431 779 MKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL 858 (922)
Q Consensus 779 ~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~ 858 (922)
.+...+|+.+|+++. -.||+|+.|||++|+|+|+...........+-++...|.. ++..|.+++++.+.+|.+
T Consensus 265 --~~~~~~~~~aDl~I~---k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g--~~~~~~~~l~~~i~~ll~ 337 (391)
T PRK13608 265 --KHMNEWMASSQLMIT---KPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFG--KIADTPEEAIKIVASLTN 337 (391)
T ss_pred --chHHHHHHhhhEEEe---CCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcE--EEeCCHHHHHHHHHHHhc
Confidence 456677899999995 2478999999999999998742222234445566666764 456799999999999999
Q ss_pred CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 859 DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 859 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
|++.+.+|+++.++.. ..++.+..++.+++.+..+-+
T Consensus 338 ~~~~~~~m~~~~~~~~---~~~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 338 GNEQLTNMISTMEQDK---IKYATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred CHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHhhhhhh
Confidence 9999999999999864 339999999999888765544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-10 Score=139.85 Aligned_cols=372 Identities=17% Similarity=0.073 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH
Q 002431 68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA-LNPLLVDAHSNLGNLMK 146 (922)
Q Consensus 68 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~ 146 (922)
..+...+..+...|++.+|...+..+-.. +.-.......+......|+++.+...++.+-. ....++......+.++.
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 34455566677788888887766554211 11123344556667778888877777655411 11233445567788888
Q ss_pred HcCCHHHHHHHHHHHHhhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHH
Q 002431 147 AQGLVQEAYSCYLEALRIQPT---------FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP-----DAYLNLGNV 212 (922)
Q Consensus 147 ~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~ 212 (922)
..|++++|...+..+....+. .......++.++...|++++|...+++++...+... .+...++.+
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 999999999999888664221 123445567788899999999999999987544322 245678888
Q ss_pred HHHcCChHHHHHHHHHHHhhCCC-------hhHHHhHHHHHHHcCChHHHHHHHHHHHhcC--------CCcHHHHHHHH
Q 002431 213 YKALGMPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYERGQADMAILYYKQAIGCD--------PRFLEAYNNLG 277 (922)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~l~ 277 (922)
+...|++++|...+++++..... ...+..++.++...|++++|...+++++... +.....+..++
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 99999999999999999865321 3456788999999999999999999988531 11223456778
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-----ChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCc--hhh-h----hHH
Q 002431 278 NALKDVGRVDEAIQCYNQCLSLQPS-----HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS--APF-N----NLA 345 (922)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~-~----~la 345 (922)
.++...|++++|...+.+++..... ....+..++.++...|++++|...+.++........ ..+ . ...
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 8899999999999999998875321 234566788899999999999999999876533211 111 1 122
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhhC------CCcHHHHHHHHHH
Q 002431 346 VIYKQQGNYADAISCYNEVLRIDPLAA----DGLVNRGNTYKEIGRVTDAIQDYIRAITIR------PTMAEAHANLASA 415 (922)
Q Consensus 346 ~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~ 415 (922)
..+...|+.+.|...+.......+... ..+..++.++...|++++|...+++++... .....++..+|.+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 445568999999999877665332222 125678999999999999999999998762 1234578889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCH
Q 002431 416 YKDSGHVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 416 ~~~~g~~~~A~~~~~~al~~~p~~~ 440 (922)
+...|+.++|...+.+++++.....
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999875543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-12 Score=119.54 Aligned_cols=124 Identities=14% Similarity=0.098 Sum_probs=86.1
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002431 20 EHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99 (922)
Q Consensus 20 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 99 (922)
.+|+++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4566666666653 4456677777777777777777777777777777777777777777777777777777777777
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002431 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146 (922)
Q Consensus 100 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 146 (922)
++.+++.+|.++...|++++|+..|+++++..|+++..+..++.+..
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 77777777777777777777777777777777777666666655543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-10 Score=111.86 Aligned_cols=308 Identities=15% Similarity=0.092 Sum_probs=229.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122 (922)
Q Consensus 43 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 122 (922)
+.+..+|..|++++..-.+.+|.+...+..+|.||+...+|..|..+|++.-...|.........++.+++.+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999988888889999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002431 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202 (922)
Q Consensus 123 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 202 (922)
+...+.....-........+.+.+..+++..+..+.++.- ..+......+.|.+.++.|+++.|++-|+.+++...-+
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 9888765422223345556667777888877776665532 12556778889999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCC--hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 002431 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQT----RPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL 276 (922)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 276 (922)
+-.-++++.++.+.+++..|+++..++++. .|. .-.......+-. .|+. +.+-..+ -.++++..
T Consensus 178 pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgNt---~~lh~Sa------l~eAfNLK 247 (459)
T KOG4340|consen 178 PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGNT---LVLHQSA------LVEAFNLK 247 (459)
T ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccch---HHHHHHH------HHHHhhhh
Confidence 888999999999999999999998888764 343 000000001000 1111 1111111 13466677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCH
Q 002431 277 GNALKDVGRVDEAIQCYNQCLSLQ--PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354 (922)
Q Consensus 277 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 354 (922)
+.++.+.++++.|.+.+..+--.. .-+|..+.+++..-. .+++.+...-+.-.+.++|-..+++-++-.+|++..-+
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHH
Confidence 888899999999988775542221 124556666664432 35566777777778888998888999999999999888
Q ss_pred HHHHHHHHH
Q 002431 355 ADAISCYNE 363 (922)
Q Consensus 355 ~~A~~~~~~ 363 (922)
+-|...+-+
T Consensus 327 ~lAADvLAE 335 (459)
T KOG4340|consen 327 DLAADVLAE 335 (459)
T ss_pred hHHHHHHhh
Confidence 888776643
|
|
| >TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=142.51 Aligned_cols=304 Identities=16% Similarity=0.164 Sum_probs=169.8
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceE--ECCC---CC------------
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFV--DVSA---MS------------ 600 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~------------ 600 (922)
||.++.++-..|-. ....+.+.+.+.++||++++. +.. . ...........++ +... .+
T Consensus 2 ~i~~~~g~~~g~~~--~~~~La~~L~~~g~eV~vv~~-~~~-~-~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~ 76 (348)
T TIGR01133 2 KVVLAAGGTGGHIF--PALAVAEELIKRGVEVLWLGT-KRG-L-EKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLL 76 (348)
T ss_pred eEEEEeCccHHHHh--HHHHHHHHHHhCCCEEEEEeC-CCc-c-hhcccccCCCceEEEeccCcCCCChHHHHHHHHHHH
Confidence 57767665443332 334677777777899999864 211 1 1111122222222 2221 11
Q ss_pred --HHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhc--CCCceEEeccccCCCCCC-CcccEEEecCccCCcCccCCCccc
Q 002431 601 --SDMIAKLINEDKIQILINLNGYTKGARNEIFAM--QPAPIQVSYMGFPGTTGA-SYIDYLVTDEFVSPLRYAHIYSEK 675 (922)
Q Consensus 601 --~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~--~~apvq~~~~g~~~t~g~-~~~d~~~~d~~~~~~~~~~~~~e~ 675 (922)
...+.+.+++.++||+|...+.+ +....++. ...|+....++ . ..+. ...-+..+|.+++.......+.+.
T Consensus 77 ~~~~~l~~~i~~~~pDvVi~~~~~~--~~~~~~~~~~~~~p~v~~~~~-~-~~~~~~~~~~~~~d~ii~~~~~~~~~~~~ 152 (348)
T TIGR01133 77 KAVFQARRILKKFKPDAVIGFGGYV--SGPAGLAAKLLGIPLFHHEQN-A-VPGLTNKLLSRFAKKVLISFPGAKDHFEA 152 (348)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcc--cHHHHHHHHHcCCCEEEECCC-C-CccHHHHHHHHHhCeeEECchhHhhcCCc
Confidence 13578889999999995433221 11111111 23476532211 1 1111 111123455555554432222211
Q ss_pred eeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHH-HHHHHHHHHhhCCCeEE-EEecCC
Q 002431 676 LVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPE-IFNTWCNILRRVPNSAL-WLLRFP 751 (922)
Q Consensus 676 ~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~-~~~~~~~il~~~p~~~l-~~~~~~ 751 (922)
..+|+ +... ....+ ...+.++|++++.++++.+++. .|.... +++++.++.+. +.++ +++|++
T Consensus 153 -~~i~n------~v~~--~~~~~--~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~--~~~~~~~~g~~ 219 (348)
T TIGR01133 153 -VLVGN------PVRQ--EIRSL--PVPRERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEK--GIQIVHQTGKN 219 (348)
T ss_pred -eEEcC------CcCH--HHhcc--cchhhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhc--CcEEEEECCcc
Confidence 12222 1111 01111 1224567888888888877654 355444 34676666443 3444 344444
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchh--hhHH
Q 002431 752 AAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMAT--RVAG 829 (922)
Q Consensus 752 ~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~--r~~~ 829 (922)
+ .+.+++.+.++|+ .++|.|.. . +...+|..+|+++.+ +|++|++|||++|+|||+.+-+...+ ....
T Consensus 220 ~--~~~l~~~~~~~~l-~~~v~~~~---~-~~~~~l~~ad~~v~~---~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~ 289 (348)
T TIGR01133 220 D--LEKVKNVYQELGI-EAIVTFID---E-NMAAAYAAADLVISR---AGASTVAELAAAGVPAILIPYPYAADDQYYNA 289 (348)
T ss_pred h--HHHHHHHHhhCCc-eEEecCcc---c-CHHHHHHhCCEEEEC---CChhHHHHHHHcCCCEEEeeCCCCccchhhHH
Confidence 2 4788888888898 46777762 2 667778999999964 36789999999999999865332221 2223
Q ss_pred HHHHhcCCCCcccc-C--CHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002431 830 SLCLATGLGEEMIV-N--SMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (922)
Q Consensus 830 ~~~~~~g~~~~~i~-~--~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~ 874 (922)
.++...|..- ++. . +++++++++.++..|++.+++++++.++..
T Consensus 290 ~~i~~~~~G~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01133 290 KFLEDLGAGL-VIRQKELLPEKLLEALLKLLLDPANLEAMAEAARKLA 336 (348)
T ss_pred HHHHHCCCEE-EEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC
Confidence 4565544433 442 2 499999999999999999999999998754
|
RL J Bacteriol 1993 Mar;175(6):1841-3 |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.8e-12 Score=123.19 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=107.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-HHhCC--HHHHHH
Q 002431 317 WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY-KEIGR--VTDAIQ 393 (922)
Q Consensus 317 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~--~~~A~~ 393 (922)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|+++++++|+++..+..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 566778888888888888888888888888888999999999999999999999999999999875 67677 589999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 002431 394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 394 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 440 (922)
.++++++.+|+++.+++.+|..+.+.|++++|+..|+++++..|.+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999999999999999999999887754
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-11 Score=118.42 Aligned_cols=172 Identities=15% Similarity=0.162 Sum_probs=122.6
Q ss_pred HHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccC
Q 002431 289 AIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 368 (922)
Q Consensus 289 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 368 (922)
+...+-.....+|++.++ ..++..+...|+-+.+..+..+.....|.+......+|......|++.+|+..++++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 444455555566666666 6667777777777777777777666666666666667777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002431 369 PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLH 448 (922)
Q Consensus 369 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 448 (922)
|+++++|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..|.-.|+++.|..++.++....+.+..+..|+..
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhcccCChhhHhH
Q 002431 449 TLQCVCSWEDRDR 461 (922)
Q Consensus 449 ~~~~~~~~~~a~~ 461 (922)
.....|+..+|+.
T Consensus 211 ~~~~~g~~~~A~~ 223 (257)
T COG5010 211 VVGLQGDFREAED 223 (257)
T ss_pred HHhhcCChHHHHh
Confidence 7777666555544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.4e-10 Score=138.53 Aligned_cols=370 Identities=15% Similarity=0.038 Sum_probs=266.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHH
Q 002431 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIE-LRPNFADAWSNLASAYM 112 (922)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~ 112 (922)
..+...+..+...|++.+|+..+..+-.. +.-.......+......|++..+...+..+-. ....++......+.++.
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 34445566777888988888766544111 11233445566677788888887777655411 11223445566778888
Q ss_pred HcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----HHHHHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALNPL---------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF-----AIAWSNLAGL 178 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~ 178 (922)
..|++++|...+..+....+. .......++.++...|++++|...+++++...+.. ..+...++.+
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 999999999999888664221 12344567788889999999999999998854432 2356778888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-----C----hhHHHhHH
Q 002431 179 FMESGDLNRALQYYKEAVKLKPTF------PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-----N----AIAFGNLA 243 (922)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~----~~~~~~l~ 243 (922)
+...|++++|...+++++...... ...+..++.++...|++++|...+++++.... . ...+..++
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 999999999999999998653321 23567789999999999999999999887421 1 23455778
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHH----hHH
Q 002431 244 STYYERGQADMAILYYKQAIGCDP-----RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH---PQALT----NLG 311 (922)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~----~la 311 (922)
.++...|++++|...+.+++.... .....+..++.++...|++++|...+.++....... ..... ...
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 889999999999999999875422 124456678899999999999999999987753321 11111 122
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCch----hhhhHHHHHHHcCCHHHHHHHHHHHHccC------CCCHHHHHHHHHH
Q 002431 312 NIYMEWNMLPAAASYYKATLAVTTGLSA----PFNNLAVIYKQQGNYADAISCYNEVLRID------PLAADGLVNRGNT 381 (922)
Q Consensus 312 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~ 381 (922)
..+...|+.+.|...+.......+.... .+..++.++...|++++|...+++++... .....++..+|.+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 4455688999999998776553322221 14578899999999999999999998752 1234578889999
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCC
Q 002431 382 YKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 382 ~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
+...|+.++|...+.++++....
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHhCc
Confidence 99999999999999999998654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.3e-11 Score=112.39 Aligned_cols=182 Identities=19% Similarity=0.165 Sum_probs=142.8
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
...+..+..+....|+.+.|..++++.....|++...-...|..+...|++++|+++|+..++.+|.+..++.....+..
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 44555666667777888888888888777778887777777888888888888888888888888888777777777777
Q ss_pred HcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhC---CHHHHH
Q 002431 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG---RVTDAI 392 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~ 392 (922)
.+|+..+|++.+.+.++.++.+.++|..++.+|...|++++|.-++++++-++|.++..+..+|.+++-+| ++.-|.
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888877665 566788
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHH
Q 002431 393 QDYIRAITIRPTMAEAHANLASAYK 417 (922)
Q Consensus 393 ~~~~~al~~~p~~~~~~~~la~~~~ 417 (922)
++|.++++++|.+..+++.+-.+..
T Consensus 212 kyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHHHHHHhChHhHHHHHHHHHHHH
Confidence 8888888888877766666555443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-11 Score=115.73 Aligned_cols=178 Identities=22% Similarity=0.173 Sum_probs=133.5
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002431 51 MCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL 130 (922)
Q Consensus 51 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 130 (922)
.+...+-.....+|++..+ ..++..+...|+-+.+..+..++...+|.+......+|....+.|++.+|+..+.++...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3555555556667777777 777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002431 131 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLG 210 (922)
Q Consensus 131 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 210 (922)
.|++.+++..+|.+|.+.|++++|...|.+++++.|.++.+..+++..+.-.|+++.|..++..+....+.+..+..+++
T Consensus 130 ~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLA 209 (257)
T COG5010 130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLA 209 (257)
T ss_pred CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777776777777777
Q ss_pred HHHHHcCChHHHHHHHHHH
Q 002431 211 NVYKALGMPQEAIMCYQRA 229 (922)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~ 229 (922)
.+....|++.+|.++..+-
T Consensus 210 l~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 210 LVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHhhcCChHHHHhhcccc
Confidence 7777777777777665543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-11 Score=117.57 Aligned_cols=123 Identities=17% Similarity=0.232 Sum_probs=68.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 002431 80 KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM-KAQGL--VQEAYS 156 (922)
Q Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 156 (922)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|+++++.+|++...+..+|.++ ...|+ .++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 344455555555555555555555555555555555555555555555555555555555555543 34444 355555
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002431 157 CYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202 (922)
Q Consensus 157 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 202 (922)
.++++++.+|++..++..+|..+.+.|++++|+..++++++..|.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 5555555555555555555555555555555555555555555443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.5e-12 Score=128.91 Aligned_cols=256 Identities=16% Similarity=0.096 Sum_probs=155.3
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHH
Q 002431 179 FMESGDLNRALQYYKEAVKLKPT-FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAIL 257 (922)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 257 (922)
++-.|+|..++...+ ....++. .......+.+++..+|+++..+...... ..|...+...++..+...++.+.++.
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS--SSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT--SSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC--CChhHHHHHHHHHHHhCccchHHHHH
Confidence 344566666655444 1111111 1234455566666666665544333221 13444444455554444444555555
Q ss_pred HHHHHHhcC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCC
Q 002431 258 YYKQAIGCD-P-RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 335 (922)
Q Consensus 258 ~~~~~l~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 335 (922)
.++..+... + .+.......|.++...|++++|++.+.+. .+.+.......++.+.++++.|.+.++.+.+.+.
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e 162 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE 162 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 554443221 1 23334444556666667777777666542 4566666677777777777777777777766665
Q ss_pred CCchhhhhHHHHHHHcC--CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 002431 336 GLSAPFNNLAVIYKQQG--NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 413 (922)
Q Consensus 336 ~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 413 (922)
+...+....+.+....| ++.+|...|+++.+..+.++..++.++.++..+|++++|.+.++++++.+|++++++.+++
T Consensus 163 D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNli 242 (290)
T PF04733_consen 163 DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLI 242 (290)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 54444444444444444 5888888888887777778888888888888888888888888888888888888888888
Q ss_pred HHHHhcCCH-HHHHHHHHHHHhcCCCCHHH
Q 002431 414 SAYKDSGHV-EAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 414 ~~~~~~g~~-~~A~~~~~~al~~~p~~~~~ 442 (922)
.+....|+. +.+.+++.++...+|+++..
T Consensus 243 v~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 243 VCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 888888877 66777888888888887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-12 Score=142.80 Aligned_cols=303 Identities=13% Similarity=0.124 Sum_probs=183.8
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCC-CeEEEEEecCCCCChHHHHHHHh-----ccCceEECCCCC----------H
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEWRQRTQS-----EAEHFVDVSAMS----------S 601 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~----------~ 601 (922)
||.++.+ .-|-.-.+.++++.+.+. ++++.++.++...+..+...+.. ..+....+.+-+ .
T Consensus 1 ~i~~~~g---tr~~~~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 77 (363)
T cd03786 1 KILVVTG---TRPEYIKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLL 77 (363)
T ss_pred CEEEEEe---cCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHH
Confidence 4555553 234444677888888765 79999888886554433332222 122333343321 2
Q ss_pred HHHHHHHHhCCCeEEEcCCCcCCCCchhhh----hc--CCCceEEeccccCCC--CCCCc--cc---EEEecCccCCcCc
Q 002431 602 DMIAKLINEDKIQILINLNGYTKGARNEIF----AM--QPAPIQVSYMGFPGT--TGASY--ID---YLVTDEFVSPLRY 668 (922)
Q Consensus 602 ~~~~~~i~~~~~dil~~~~~~~~~~~~~~~----~~--~~apvq~~~~g~~~t--~g~~~--~d---~~~~d~~~~~~~~ 668 (922)
..+.+.+++.++||+ |++|.+...+ +. .--|+....-|.. | .+.+. .. ...+|.++++++.
T Consensus 78 ~~l~~~l~~~~pDvV-----~~~g~~~~~~~~~~aa~~~~iPvv~~~~g~~-s~~~~~~~~~~r~~~~~~ad~~~~~s~~ 151 (363)
T cd03786 78 IGLEAVLLEEKPDLV-----LVLGDTNETLAAALAAFKLGIPVAHVEAGLR-SFDRGMPDEENRHAIDKLSDLHFAPTEE 151 (363)
T ss_pred HHHHHHHHHhCCCEE-----EEeCCchHHHHHHHHHHHcCCCEEEEecccc-cCCCCCCchHHHHHHHHHhhhccCCCHH
Confidence 457788888999999 7777653222 21 2247665433321 1 01111 00 1245777777664
Q ss_pred cCCC-------ccceeecCCccccCCCccccccCCCCCC-CCCcCCCCCCCCcEEEEecCCC-----CCCCHHHHHHHHH
Q 002431 669 AHIY-------SEKLVHVPHCYFVNDYKQKNMDVLDPNC-QPKRSDYGLPEDKFIFACFNQL-----YKMDPEIFNTWCN 735 (922)
Q Consensus 669 ~~~~-------~e~~~~lp~~~~~~~~~~~~~~~~~~~~-~~~r~~~~l~~~~~~~~~~~~~-----~K~~~~~~~~~~~ 735 (922)
...+ .+++..+++..+. .......... ...|..+|++++.++++++++. .|+.+.+++++.+
T Consensus 152 ~~~~l~~~G~~~~kI~vign~v~d-----~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~ 226 (363)
T cd03786 152 ARRNLLQEGEPPERIFVVGNTMID-----ALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAE 226 (363)
T ss_pred HHHHHHHcCCCcccEEEECchHHH-----HHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHHH
Confidence 3222 1223333322110 0000001111 1134578888777777677764 4788999999988
Q ss_pred HHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCe
Q 002431 736 ILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPM 815 (922)
Q Consensus 736 il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pv 815 (922)
+... +..+++.|.++. ...+++.+.+.++..++|.|.|.....+...+|..+|+++-++. | .+.||+++|+||
T Consensus 227 l~~~--~~~vi~~~~~~~-~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg---g-i~~Ea~~~g~Pv 299 (363)
T cd03786 227 LAEE--DVPVVFPNHPRT-RPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG---G-IQEEASFLGVPV 299 (363)
T ss_pred HHhc--CCEEEEECCCCh-HHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc---c-HHhhhhhcCCCE
Confidence 7543 566666666554 77888888888874478999998777888888999999997763 3 468999999999
Q ss_pred eeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 002431 816 ITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALT 867 (922)
Q Consensus 816 v~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~ 867 (922)
|+....+-. ..+...|..- ++.+|++++++.+.++.+|+..+..++
T Consensus 300 I~~~~~~~~-----~~~~~~g~~~-~~~~~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 300 LNLRDRTER-----PETVESGTNV-LVGTDPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred EeeCCCCcc-----chhhheeeEE-ecCCCHHHHHHHHHHHhcCchhhhcCC
Confidence 997643211 1122235544 444578999999999999988777664
|
The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=133.04 Aligned_cols=219 Identities=18% Similarity=0.212 Sum_probs=195.3
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
......++..+...|-...|+..+++. +.|-....+|...|+..+|..+..+-++ .|+++..|..+|++..
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLH 468 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhcc
Confidence 455678899999999999999999884 5788889999999999999999999888 7778888888888887
Q ss_pred HcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002431 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 395 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 395 (922)
...-+++|.++.+..- ..+...+|......++++++.+.++..++++|-....|+.+|.+..+++++..|.+.|
T Consensus 469 d~s~yEkawElsn~~s------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYIS------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred ChHHHHHHHHHhhhhh------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 7776777777666443 3355666666777899999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHH
Q 002431 396 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 469 (922)
Q Consensus 396 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 469 (922)
..++.++|++.++|++++.+|.+.|+..+|...++++++.+-++..+|-|........|.|+++.+.+.++..+
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988887764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.4e-12 Score=125.28 Aligned_cols=270 Identities=26% Similarity=0.308 Sum_probs=143.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHHHHHH
Q 002431 37 LLLGAIYYQLHDYDMCIARNEEALRLEPRF----AECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFADAWSN 106 (922)
Q Consensus 37 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~ 106 (922)
..-|.-+++.|++...+.+|+.+++...++ ..+|..+|++|+..++|++|+++-..=+.+ .-..+.+.-+
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 344666777788888888888887776654 345677778888888888887765433222 1112344556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHhhCCC
Q 002431 107 LASAYMRKGRLNEAAQCCRQALALN------PLLVDAHSNLGNLMKAQGLV-------------QEAYSCYLEALRIQPT 167 (922)
Q Consensus 107 la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~-------------~~A~~~~~~al~~~p~ 167 (922)
+|..+.-.|.+++|+.+..+-+... -....+++++|.+|...|+. +++...++
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~-------- 172 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE-------- 172 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH--------
Confidence 7777777888888877776665442 12345777788887776652 11222222
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---C---
Q 002431 168 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT------FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP---N--- 235 (922)
Q Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~--- 235 (922)
.|.++|..-+++... ...++-++|+.|+-.|+++.|+..-+.-+.+.. +
T Consensus 173 -------------------~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAa 233 (639)
T KOG1130|consen 173 -------------------NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAA 233 (639)
T ss_pred -------------------HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHH
Confidence 222222222221111 112444455555555555555544443333211 1
Q ss_pred -hhHHHhHHHHHHHcCChHHHHHHHHHHHh----cCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CC
Q 002431 236 -AIAFGNLASTYYERGQADMAILYYKQAIG----CDPR--FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ------PS 302 (922)
Q Consensus 236 -~~~~~~l~~~~~~~g~~~~A~~~~~~~l~----~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~ 302 (922)
..++.+++.++.-.|+++.|+++|+..+. +... ..+..+.+|+.|.-..++++|+.++++-+.+. ..
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445555555555555555555555441 1111 22344555555555555666665555544431 11
Q ss_pred ChHHHHhHHHHHHHcCChhHHHHHHHHHHhc
Q 002431 303 HPQALTNLGNIYMEWNMLPAAASYYKATLAV 333 (922)
Q Consensus 303 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 333 (922)
...++..+|..+...|..++|+.+.++.++.
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2345555666666666666665555554443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-10 Score=126.32 Aligned_cols=221 Identities=19% Similarity=0.283 Sum_probs=156.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002431 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 212 (922)
Q Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 212 (922)
........++..+...|-..+|+..|++. ..|...+.+|...|+..+|..+..+-++ .|+++..|..+|++
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV 466 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence 34445566777777777777777777763 4566677777777777777777777777 55556666666666
Q ss_pred HHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 213 YKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292 (922)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 292 (922)
.....-+++|.++.+... ..+...++......++++++.+.++..++++|-...+|+.+|.+..+.++++.|.+.
T Consensus 467 ~~d~s~yEkawElsn~~s-----arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYIS-----ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred ccChHHHHHHHHHhhhhh-----HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 555444444444444322 334455555556677777777777777777777777777777777777777777777
Q ss_pred HHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHcc
Q 002431 293 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367 (922)
Q Consensus 293 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 367 (922)
|...+...|++.++|++++..|.+.++-.+|...++++++.+-.+...|.+...+..+.|.+++|++.+.+.+.+
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 777777777777777777777777777777777777777777777777777777777777777777777777665
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.6e-12 Score=124.83 Aligned_cols=96 Identities=25% Similarity=0.238 Sum_probs=59.4
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHcc----C--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC------CCcHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRI----D--PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR------PTMAE 407 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~ 407 (922)
++.++|.++.-.|+++.|++.|++.+.+ . ...+...+.+|..|.-..++++|+.++.+-+.+. .....
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3455555555555555555555554432 1 1224456667777777777777777777666543 22355
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002431 408 AHANLASAYKDSGHVEAAIKSYKQALLL 435 (922)
Q Consensus 408 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 435 (922)
+++.||..+...|..++|+.+.++.++.
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7777777777777777777777666654
|
|
| >cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.1e-12 Score=140.89 Aligned_cols=171 Identities=16% Similarity=0.128 Sum_probs=124.4
Q ss_pred CCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCC----eEEEEecCCh----hhHHHHHHHHH----HcCCC----
Q 002431 707 YGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPA----AGEMRLRAYAV----AQGVQ---- 768 (922)
Q Consensus 707 ~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~~----~~~~~l~~~~~----~~g~~---- 768 (922)
.++.++.+++++++|+. |+++.+++++.+++++.|+ .+|+++|.+. .....+++.++ +.+..
T Consensus 258 ~~~~~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~ 337 (460)
T cd03788 258 RERLGGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTL 337 (460)
T ss_pred HHhcCCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCC
Confidence 45566778888889874 9999999999999999996 5688786432 11233444333 32211
Q ss_pred -CCceE-EcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCC----eeeecCCcchhhhH-HHHHHhcCCCCc
Q 002431 769 -PDQII-FTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP----MITLPLEKMATRVA-GSLCLATGLGEE 840 (922)
Q Consensus 769 -~~rv~-f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~P----vv~~~~~~~~~r~~-~~~~~~~g~~~~ 840 (922)
...|+ |.|.++..+..++|+.+||||.|+..+| |++++|||+||+| ||+. +.+ .+-. |.+.
T Consensus 338 ~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S-------~~~G~~~~---~~~g- 406 (460)
T cd03788 338 DWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILS-------EFAGAAEE---LSGA- 406 (460)
T ss_pred CceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEe-------ccccchhh---cCCC-
Confidence 12354 5577889999999999999999999999 9999999999999 6643 222 1111 3344
Q ss_pred ccc--CCHHHHHHHHHHHhcC-HHHHHHHHHHHHhhcccCCCCChHHHHHHHHH
Q 002431 841 MIV--NSMKEYEERAVSLALD-RQKLQALTNKLKSVRLTCPLFDTARWVKNLER 891 (922)
Q Consensus 841 ~i~--~~~~~~~~~~~~l~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 891 (922)
+++ .|++++++++.+++++ ++.++.+.++.++.+. .||...+++++..
T Consensus 407 ~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~---~~~~~~w~~~~l~ 457 (460)
T cd03788 407 LLVNPYDIDEVADAIHRALTMPLEERRERHRKLREYVR---THDVQAWANSFLD 457 (460)
T ss_pred EEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHH
Confidence 443 5899999999999885 4677777778887764 3999999888764
|
It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain. |
| >TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=134.65 Aligned_cols=175 Identities=15% Similarity=0.141 Sum_probs=126.5
Q ss_pred CcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCC----eEEEEecC-----ChhhHHHHHHHHHHc------
Q 002431 703 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRF-----PAAGEMRLRAYAVAQ------ 765 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~-----~~~~~~~l~~~~~~~------ 765 (922)
+|++++ +..++++++|+. |+++.+++++.+++++.|+ .+|+++|. ++. ...+++.+++.
T Consensus 252 lr~~~~---~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~-~~~l~~~i~~lv~~in~ 327 (456)
T TIGR02400 252 LRESLK---GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPE-YQQLRRQVEELVGRING 327 (456)
T ss_pred HHHHcC---CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchH-HHHHHHHHHHHHHHHHh
Confidence 455552 557888999874 9999999999999999996 45776652 232 45666666554
Q ss_pred --CC-C-CCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCC----eeeecCCcchhhhHHHHHHhcC
Q 002431 766 --GV-Q-PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP----MITLPLEKMATRVAGSLCLATG 836 (922)
Q Consensus 766 --g~-~-~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~P----vv~~~~~~~~~r~~~~~~~~~g 836 (922)
|- + ..-+.|.|.++.++..++|+.+||||.|+..+| |++++|||+||+| ||+......+. .+ +
T Consensus 328 ~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~-----~l---~ 399 (456)
T TIGR02400 328 RFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQ-----EL---N 399 (456)
T ss_pred ccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChH-----Hh---C
Confidence 11 1 012344557889999999999999999999999 9999999999999 77443221111 11 2
Q ss_pred CCCccc-cCCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 837 LGEEMI-VNSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 837 ~~~~~i-~~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
+..+| ..|++++++++.++.+ +++.++...+++++.+.. ||...+++++....
T Consensus 400 -~gllVnP~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~---~~~~~W~~~~l~~l 454 (456)
T TIGR02400 400 -GALLVNPYDIDGMADAIARALTMPLEEREERHRAMMDKLRK---NDVQRWREDFLSDL 454 (456)
T ss_pred -CcEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHh
Confidence 23133 2689999999988887 667788888888888643 99999999877543
|
This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-10 Score=132.11 Aligned_cols=154 Identities=13% Similarity=0.067 Sum_probs=135.8
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCC
Q 002431 256 ILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 335 (922)
Q Consensus 256 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 335 (922)
+.-+.......|.+.+++..+|.+....|.+++|...++.+++..|++..+...++.++.+.+++++|...+++++...|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p 151 (694)
T PRK15179 72 LPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS 151 (694)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC
Confidence 33333344567888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHH
Q 002431 336 GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409 (922)
Q Consensus 336 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 409 (922)
++...++.+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+
T Consensus 152 ~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 152 SSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 99999999999999999999999999999998899999999999999999999999999999998875544443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.8e-07 Score=102.58 Aligned_cols=288 Identities=16% Similarity=0.103 Sum_probs=200.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 002431 7 HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLA 86 (922)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 86 (922)
.-....+++.+|++...+++++.|+...+....|..+.++|+.++|..+++..-...+++...+-.+-.+|...|++++|
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34567899999999999999999999999999999999999999999888887777888889999999999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCH---------HHHHH
Q 002431 87 IRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA-QGLV---------QEAYS 156 (922)
Q Consensus 87 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~---------~~A~~ 156 (922)
..+|++++..+|+ .+....+-.+|.+.++|.+-.+.--++.+..|+++..+.....+..+ .... .-|..
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 9999999999999 88888999999999999887777777777778877655444444333 2222 23455
Q ss_pred HHHHHHhhC-CCcH-HHHHHHHHHHHHcCCHHHHHHHHHH-HHh-cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002431 157 CYLEALRIQ-PTFA-IAWSNLAGLFMESGDLNRALQYYKE-AVK-LKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 157 ~~~~al~~~-p~~~-~~~~~la~~~~~~g~~~~A~~~~~~-~l~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (922)
..++.++.. +-.. .-....-.++..+|++++|.+.+.. ..+ ..+.+..........+...+++.+-.++..+++..
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 556666554 2211 1122334456678999999999843 233 33444455566778888889999999999999888
Q ss_pred CCCh-hHH----HhHH---------HHHHHcCChHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 233 RPNA-IAF----GNLA---------STYYERGQADMAILYYKQAIGCDPRFL-EAYNNLGNALKDVGRVDEAIQCYNQ 295 (922)
Q Consensus 233 ~p~~-~~~----~~l~---------~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (922)
.++. .++ ..+. ..+...+..+...+..++.++.+...+ -++..+-.-+...|+.+++.-.|-+
T Consensus 256 ~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~ 333 (932)
T KOG2053|consen 256 GNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFK 333 (932)
T ss_pred CCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHH
Confidence 7773 221 1111 111222334444555555554322222 2333333333455777776655543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.2e-11 Score=122.69 Aligned_cols=254 Identities=15% Similarity=0.052 Sum_probs=171.4
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 002431 145 MKAQGLVQEAYSCYLEALRIQP-TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 223 (922)
Q Consensus 145 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 223 (922)
++-.|+|..++...+ ....++ ........+.+++..+|+++..+..... ..+....+...++..+...++.+.++
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHH
Confidence 344566666665444 112222 2234455566667777776655443322 12223344555555554444555566
Q ss_pred HHHHHHHhhCCC---hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002431 224 MCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300 (922)
Q Consensus 224 ~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 300 (922)
..++..+..... .......+.++...|++++|++.+.+. .+.+.......+++..++++.|.+.++.+.+.+
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 555554433211 344455567777788888888777653 567777888889999999999999999988877
Q ss_pred CCChHHHHhHHHHHHHcC--ChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 002431 301 PSHPQALTNLGNIYMEWN--MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNR 378 (922)
Q Consensus 301 p~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 378 (922)
.+..-+....+++....| ++.+|..+|+++....+.++..++.++.++..+|++++|.+.++++++.+|.+++++.++
T Consensus 162 eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl 241 (290)
T PF04733_consen 162 EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL 241 (290)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 666555555566665555 689999999998888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCH-HHHHHHHHHHHhhCCCcHH
Q 002431 379 GNTYKEIGRV-TDAIQDYIRAITIRPTMAE 407 (922)
Q Consensus 379 ~~~~~~~g~~-~~A~~~~~~al~~~p~~~~ 407 (922)
+.+...+|+. +.+.+++.+....+|+++.
T Consensus 242 iv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 242 IVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 9999999998 6677788888888898764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.3e-11 Score=110.29 Aligned_cols=118 Identities=20% Similarity=0.248 Sum_probs=97.9
Q ss_pred HHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002431 325 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
..|++++..+|++......+|..+...|++++|+..++++++.+|.++.++..+|.++...|++++|...++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35667777777777777788888888888888888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
++..++.+|.++...|++++|+..|+++++.+|++...
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 88888888888888888888888888888888877553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-11 Score=118.09 Aligned_cols=108 Identities=32% Similarity=0.486 Sum_probs=99.0
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (922)
+..-|.-+.+.++|.+|+..|.+|++++|.++..|.+++.+|.++|.++.|++..+.++.++|....+|.+||.+|..+|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 34557778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002431 421 HVEAAIKSYKQALLLRPDFPEATCNLLH 448 (922)
Q Consensus 421 ~~~~A~~~~~~al~~~p~~~~~~~~l~~ 448 (922)
++++|++.|+++++++|++.....+|-.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999999999999999877666543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=107.02 Aligned_cols=116 Identities=15% Similarity=0.161 Sum_probs=84.2
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002431 21 HSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF 100 (922)
Q Consensus 21 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 100 (922)
.+++++..+|++....+.+|.++...|++++|+..+++++..+|.++..+..+|.++...|++++|+..++++++.+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 56666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002431 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVD 136 (922)
Q Consensus 101 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 136 (922)
+..++.+|.++...|++++|+..++++++.+|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 777777777777777777777777777777766544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.5e-11 Score=124.77 Aligned_cols=186 Identities=13% Similarity=0.081 Sum_probs=148.8
Q ss_pred CCCcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhC-----CCeEEEEecCC-hh--------hHHHHHHHHHH
Q 002431 701 QPKRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRV-----PNSALWLLRFP-AA--------GEMRLRAYAVA 764 (922)
Q Consensus 701 ~~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~-----p~~~l~~~~~~-~~--------~~~~l~~~~~~ 764 (922)
.+.|...|.....+.|.++|+.. |...-.+.++.+..... +.-++.+.|+. -. -...++..+++
T Consensus 261 ~~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~ 340 (495)
T KOG0853|consen 261 LPVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEE 340 (495)
T ss_pred cccceeeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHH
Confidence 34677778887778899999764 88999999999887776 44567776632 11 02578899999
Q ss_pred cCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCee-eecCCcchhhhHHHHHHhcCCCCccc
Q 002431 765 QGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMI-TLPLEKMATRVAGSLCLATGLGEEMI 842 (922)
Q Consensus 765 ~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv-~~~~~~~~~r~~~~~~~~~g~~~~~i 842 (922)
.++..+.|.|+...+..+-..++..+.+.+.+...|. |.|++|||++|+||| |..|.+....+. |.++.++
T Consensus 341 ~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~-------~~tG~l~ 413 (495)
T KOG0853|consen 341 YDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVH-------GVTGLLI 413 (495)
T ss_pred hCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEc-------CCcceee
Confidence 9997688999998888777888888888888877788 999999999999999 556776666555 7777455
Q ss_pred cCCHH---HHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 843 VNSMK---EYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 843 ~~~~~---~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
..+.+ .++...+++.+||+.+.+++++.++++. ..|++..|.+++...-..
T Consensus 414 dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~--e~fs~~~~~~ri~~~~~~ 467 (495)
T KOG0853|consen 414 DPGQEAVAELADALLKLRRDPELWARMGKNGLKRVK--EMFSWQHYSERIASVLGK 467 (495)
T ss_pred CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHhHh
Confidence 55655 4999999999999999999999999984 469998888888877653
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-10 Score=113.49 Aligned_cols=120 Identities=26% Similarity=0.385 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
++.+-.-|.-+++.++|++|+..|.++++++|.++..|...+.+|.++|.++.|++..+.++.++|....+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 45566778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ 152 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 152 (922)
.+|++++|++.|++++.++|++......|..+-.+.+...
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999888888887777777665
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=103.01 Aligned_cols=102 Identities=21% Similarity=0.165 Sum_probs=94.0
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 002431 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414 (922)
Q Consensus 335 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 414 (922)
++.-+..+.+|..+...|++++|.+.|+-+...+|.+...|+++|.++..+|++++|+..|.+++.++|+++..++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 55566678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC
Q 002431 415 AYKDSGHVEAAIKSYKQALLLR 436 (922)
Q Consensus 415 ~~~~~g~~~~A~~~~~~al~~~ 436 (922)
++...|+.+.|++.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998875
|
|
| >cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-11 Score=128.97 Aligned_cols=124 Identities=11% Similarity=0.015 Sum_probs=85.2
Q ss_pred eEEcC-CCC------cHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccc-
Q 002431 772 IIFTD-VAM------KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI- 842 (922)
Q Consensus 772 v~f~~-~~~------~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i- 842 (922)
|+|.| +++ ..++..+|+.||+|+.||.|+| |.|.+|||+||+||||.....+..=+- .+...-+-...+|
T Consensus 450 vif~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~ 528 (590)
T cd03793 450 VVFHPEFLSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIV 528 (590)
T ss_pred EEEcccccCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEe
Confidence 77776 221 2356777899999999999999 999999999999999887765521111 0110000111133
Q ss_pred -------cCCHHHHHHHHHHHhcCHHHHHHHHHHHH-hhcccCCCCChHHHHHHHHHHHHHHHHH
Q 002431 843 -------VNSMKEYEERAVSLALDRQKLQALTNKLK-SVRLTCPLFDTARWVKNLERSYFKMWSL 899 (922)
Q Consensus 843 -------~~~~~~~~~~~~~l~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 899 (922)
..+.+++.+.+.++++. ..++.+.++.+ ++. +..|+++.++....++|..++++
T Consensus 529 ~r~~~~~~e~v~~La~~m~~~~~~-~~r~~~~~r~~~~r~--s~~f~W~~~~~~Y~~A~~~Al~~ 590 (590)
T cd03793 529 DRRFKSPDESVQQLTQYMYEFCQL-SRRQRIIQRNRTERL--SDLLDWRNLGRYYRKARQLALSR 590 (590)
T ss_pred cCCccchHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHHhhC
Confidence 24678888888888854 55555555543 222 56799999999999999988753
|
GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.7e-07 Score=92.73 Aligned_cols=426 Identities=12% Similarity=0.036 Sum_probs=245.9
Q ss_pred HHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002431 23 NSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102 (922)
Q Consensus 23 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 102 (922)
++-++.+|.|..+|+.+..-+..+ .+++..+.|++.+...|..+.+|...+......++|+...++|.+++...-+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 556677888888888887766555 7888888888888888888888888888888888888888888887764332 44
Q ss_pred HHHHHHH-HHHHcCCHHHHHHHHHHH----HHh---CCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhC
Q 002431 103 AWSNLAS-AYMRKGRLNEAAQCCRQA----LAL---NPLLVDAHSNLGNLMK---------AQGLVQEAYSCYLEALRIQ 165 (922)
Q Consensus 103 ~~~~la~-~~~~~g~~~~A~~~~~~~----l~~---~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~ 165 (922)
.|..... +-...|+...+.+..-++ +.. ++.....|...+..+. .+.+.+...+.|++++..-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 4443322 222334443333333333 222 2334444544444332 1223444455555555432
Q ss_pred CCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-------CC---
Q 002431 166 PTFA-IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT-------RP--- 234 (922)
Q Consensus 166 p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p--- 234 (922)
-.+. ..|... ..+++.+.... ..-.+-.....|..|...+++.... .|
T Consensus 168 m~nlEkLW~DY-------~~fE~~IN~~t--------------arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp 226 (656)
T KOG1914|consen 168 MHNLEKLWKDY-------EAFEQEINIIT--------------ARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVP 226 (656)
T ss_pred cccHHHHHHHH-------HHHHHHHHHHH--------------HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence 2211 111111 11111111000 0000111122233444444433321 11
Q ss_pred -C--------hhHHHhHHHHHHHcCC--------hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC------------
Q 002431 235 -N--------AIAFGNLASTYYERGQ--------ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR------------ 285 (922)
Q Consensus 235 -~--------~~~~~~l~~~~~~~g~--------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~------------ 285 (922)
. ...|.++...-...+- -..-.-.+++++..-+-.++.|+..+..+...++
T Consensus 227 ~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~ 306 (656)
T KOG1914|consen 227 PKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAK 306 (656)
T ss_pred CCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccch
Confidence 0 1122222222211111 1122334566665566666777776666665555
Q ss_pred --HHHHHHHHHHHHhhC-CCChHHHHhHHHHHHHcC---ChhHHHHHHHHHHhcCCCC-chhhhhHHHHHHHcCCHHHHH
Q 002431 286 --VDEAIQCYNQCLSLQ-PSHPQALTNLGNIYMEWN---MLPAAASYYKATLAVTTGL-SAPFNNLAVIYKQQGNYADAI 358 (922)
Q Consensus 286 --~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~ 358 (922)
.+++..++++++... ..+...++.++..-...- ..+.....+++++.....+ .-+|..+...-.+..-.+.|.
T Consensus 307 ~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHH
Confidence 677888888877643 233444555554433333 3667777888887765433 445666777777777888999
Q ss_pred HHHHHHHccCCCCHHHHHHHHH-HHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 002431 359 SCYNEVLRIDPLAADGLVNRGN-TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL-- 435 (922)
Q Consensus 359 ~~~~~al~~~p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 435 (922)
.+|.++-+..-....++..-|. -|...++..-|.++|+-.++..++.+..-......+...|+-..|..+|++++..
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999997765444344444333 3556789999999999999999999988888889999999999999999999987
Q ss_pred CCC-CHHHHHHHHHhhcccCChhhHhHHHHHHHHHHH
Q 002431 436 RPD-FPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIR 471 (922)
Q Consensus 436 ~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 471 (922)
.|+ ...+|..++.--.+.|+.....++-++....++
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 333 346677777777777776665555444444333
|
|
| >cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.2e-10 Score=113.88 Aligned_cols=106 Identities=17% Similarity=0.146 Sum_probs=85.1
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHH-hccCCcEE
Q 002431 715 IFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIR-RSSLADLF 793 (922)
Q Consensus 715 ~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~-~~~~~dv~ 793 (922)
.+|.+. ..|+.+.+++++.++.++.|+.+++++|.+.. ...........+. .++|.|.|..+..+... +++.+||+
T Consensus 109 ~~g~~~-~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~-~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~di~ 185 (229)
T cd01635 109 FVGRLA-PEKGLDDLIEAFALLKERGPDLKLVIAGDGPE-REYLEELLAALLL-LDRVIFLGGLDPEELLALLLAAADVF 185 (229)
T ss_pred EEEeec-ccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCC-hHHHHHHHHhcCC-cccEEEeCCCCcHHHHHHHhhcCCEE
Confidence 455555 56999999999999999999999999998765 5555554667787 58999999875544444 45569999
Q ss_pred ecCCCCCC-hhHHHHHHHcCCCeeeecCCcc
Q 002431 794 LDTPLCNA-HTTGTDILWAGLPMITLPLEKM 823 (922)
Q Consensus 794 l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~ 823 (922)
+.|+..++ |++++|||+||+|||+.+...+
T Consensus 186 l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 186 VLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred EecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 99998888 9999999999999997665533
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=128.90 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=109.9
Q ss_pred CCcCCCCCCCCcEEEEec-C-CCC---CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHc-CCCCCceEEc
Q 002431 702 PKRSDYGLPEDKFIFACF-N-QLY---KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQ-GVQPDQIIFT 775 (922)
Q Consensus 702 ~~r~~~~l~~~~~~~~~~-~-~~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~-g~~~~rv~f~ 775 (922)
..|.++|++++.++++.+ + |.. ++++.+++++..+.++.|+.+++++|.++..++.+++...+. |+. |.+.
T Consensus 175 ~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~---v~~~ 251 (380)
T PRK00025 175 AARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLE---VTLL 251 (380)
T ss_pred HHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCC---eEEE
Confidence 367789998766554333 3 322 457888999999888889999988876444367788877777 662 5553
Q ss_pred CCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHH---hcCC----------CCccc
Q 002431 776 DVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCL---ATGL----------GEEMI 842 (922)
Q Consensus 776 ~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~---~~g~----------~~~~i 842 (922)
. .+...+|+.+|+++.++ |++++|||++|+|||+.+....-...-+..+. ..|+ ++ ++
T Consensus 252 ~----~~~~~~~~~aDl~v~~s----G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~ 322 (380)
T PRK00025 252 D----GQKREAMAAADAALAAS----GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPE-LL 322 (380)
T ss_pred c----ccHHHHHHhCCEEEECc----cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchh-hc
Confidence 3 35677899999999864 67777999999999977443222211111111 1122 33 33
Q ss_pred c--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002431 843 V--NSMKEYEERAVSLALDRQKLQALTNKLKSV 873 (922)
Q Consensus 843 ~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~ 873 (922)
. .|++++++.+.++.+|++.++.+++++++.
T Consensus 323 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 355 (380)
T PRK00025 323 QEEATPEKLARALLPLLADGARRQALLEGFTEL 355 (380)
T ss_pred CCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2 368899999999999999999999987443
|
|
| >KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=113.04 Aligned_cols=273 Identities=15% Similarity=0.211 Sum_probs=180.9
Q ss_pred HHHHHhCCCeEEEcCCCcCCCCchhhhh-cCCCceEEeccccCCCC-CC---------------CcccEE----------
Q 002431 605 AKLINEDKIQILINLNGYTKGARNEIFA-MQPAPIQVSYMGFPGTT-GA---------------SYIDYL---------- 657 (922)
Q Consensus 605 ~~~i~~~~~dil~~~~~~~~~~~~~~~~-~~~apvq~~~~g~~~t~-g~---------------~~~d~~---------- 657 (922)
-+.|-+.-+||.||..|+.- ..++|. ++-.|| ++|..||.-+ .+ ..+-|+
T Consensus 143 ~Eai~r~~Pdi~IDtMGY~f--s~p~~r~l~~~~V-~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~~ 219 (465)
T KOG1387|consen 143 FEAIIRFPPDIFIDTMGYPF--SYPIFRRLRRIPV-VAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQSA 219 (465)
T ss_pred HHHHHhCCchheEecCCCcc--hhHHHHHHccCce-EEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHhc
Confidence 34555678999999999873 467777 444564 4555677322 11 011111
Q ss_pred --EecCccCCcCccCCCccceeecCCccccCCCccccccCCCCCCCCCcCCCCC-CCCcEEEEecC--CCCCCCHHHHHH
Q 002431 658 --VTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGL-PEDKFIFACFN--QLYKMDPEIFNT 732 (922)
Q Consensus 658 --~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l-~~~~~~~~~~~--~~~K~~~~~~~~ 732 (922)
-+|.+++.+.......-.+|..-.+.+.+.|- ....+.+..+- .+..+...+++ |+.|+|+ .++.
T Consensus 220 G~~ad~vm~NssWT~nHI~qiW~~~~~~iVyPPC---------~~e~lks~~~te~~r~~~ll~l~Q~RPEKnH~-~Lql 289 (465)
T KOG1387|consen 220 GSKADIVMTNSSWTNNHIKQIWQSNTCSIVYPPC---------STEDLKSKFGTEGERENQLLSLAQFRPEKNHK-ILQL 289 (465)
T ss_pred cccceEEEecchhhHHHHHHHhhccceeEEcCCC---------CHHHHHHHhcccCCcceEEEEEeecCcccccH-HHHH
Confidence 23445554444333334555544444433211 11123333333 12334555555 7889999 8888
Q ss_pred HHHHHhhCC------CeEEEEecCC--hhhH---HHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC
Q 002431 733 WCNILRRVP------NSALWLLRFP--AAGE---MRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA 801 (922)
Q Consensus 733 ~~~il~~~p------~~~l~~~~~~--~~~~---~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g 801 (922)
++--+.+.| +.+|+|+|+- ..+. ..|+.+++++.|+ +.|.|.--+|+++...+++.+-+-+.+-.-+.
T Consensus 290 ~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~-~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEH 368 (465)
T KOG1387|consen 290 FALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIP-KHVQFEKNVPYEKLVELLGKATIGVHTMWNEH 368 (465)
T ss_pred HHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCc-cceEEEecCCHHHHHHHhccceeehhhhhhhh
Confidence 887666554 5799999853 2223 3678899999995 77999999999999999999999999976666
Q ss_pred -hhHHHHHHHcCC-CeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCC
Q 002431 802 -HTTGTDILWAGL-PMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCP 878 (922)
Q Consensus 802 -~~t~~eal~~g~-Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~ 878 (922)
|.+++|+||+|+ ||+--.|.+.-.-|.. -.|-+-.+.+.+.+||++..++... +++.|..+|...|.+...
T Consensus 369 FGIsVVEyMAAGlIpi~h~SgGP~lDIV~~----~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~R-- 442 (465)
T KOG1387|consen 369 FGISVVEYMAAGLIPIVHNSGGPLLDIVTP----WDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLAR-- 442 (465)
T ss_pred cchhHHHHHhcCceEEEeCCCCCceeeeec----cCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH--
Confidence 999999999997 5554444333222221 1133333788999999999988876 788899999999998654
Q ss_pred CCChHHHHHHHHHHHHHHHH
Q 002431 879 LFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 879 ~~~~~~~~~~~e~~y~~~~~ 898 (922)
|+...|-+.++..+..+++
T Consensus 443 -FsE~~F~kd~~~~i~kll~ 461 (465)
T KOG1387|consen 443 -FGELKFDKDWENPICKLLE 461 (465)
T ss_pred -hhHHHHHHhHhHHHHHhhc
Confidence 9999999998887776654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.2e-09 Score=107.90 Aligned_cols=153 Identities=23% Similarity=0.166 Sum_probs=124.0
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002431 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGN 143 (922)
Q Consensus 64 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 143 (922)
|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...++.++|.+.+++++..+|........+|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 66777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 002431 144 LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 223 (922)
Q Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 223 (922)
.+.+.|++.+|+..++..+..+|+++..|..|+..|..+|+..++... .+..+...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 888888888888888888888888888888888888888876655443 345566677888888
Q ss_pred HHHHHHHhhC
Q 002431 224 MCYQRAVQTR 233 (922)
Q Consensus 224 ~~~~~~~~~~ 233 (922)
..+..+.+..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 8877777654
|
|
| >PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-10 Score=134.32 Aligned_cols=177 Identities=11% Similarity=0.085 Sum_probs=131.1
Q ss_pred CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeE----EEEec-----CChhhHHHHHHHHHHcC--CCCCc-------
Q 002431 712 DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSA----LWLLR-----FPAAGEMRLRAYAVAQG--VQPDQ------- 771 (922)
Q Consensus 712 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~----l~~~~-----~~~~~~~~l~~~~~~~g--~~~~r------- 771 (922)
+..++.++.|+ .|+.+..+++|.++++..|+.+ |++++ +++. .+.+++.+.+++ |. ++
T Consensus 278 ~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~-y~~l~~~v~~l~g~In-~~~g~~~~~ 355 (797)
T PLN03063 278 GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPE-YQKLKSQVHELVGRIN-GRFGSVSSV 355 (797)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHH-HHHHHHHHHHHHHHhh-cccccCCCc
Confidence 45677788886 4999999999999999999863 33333 2222 457777777774 42 22
Q ss_pred -eEEc-CCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCC----eeeecCCcchhhhHHHHHHhcCCCCccc-c
Q 002431 772 -IIFT-DVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP----MITLPLEKMATRVAGSLCLATGLGEEMI-V 843 (922)
Q Consensus 772 -v~f~-~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~P----vv~~~~~~~~~r~~~~~~~~~g~~~~~i-~ 843 (922)
|++. +.++..+..++|+.+||||.|+.++| |++++|||+||+| +|. |.+++.. ..+|-...+| .
T Consensus 356 pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVl-------Se~~G~~-~~l~~~allVnP 427 (797)
T PLN03063 356 PIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVL-------SEFAGAG-QSLGAGALLVNP 427 (797)
T ss_pred eeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEe-------eCCcCch-hhhcCCeEEECC
Confidence 2333 36788999999999999999999999 9999999999998 663 3333110 0123333133 2
Q ss_pred CCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHh
Q 002431 844 NSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHC 901 (922)
Q Consensus 844 ~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~ 901 (922)
.|++++++++.++++ +++.++...+.+++.+.. +|+..+++.+.+.++++++...
T Consensus 428 ~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~---~~~~~Wa~~fl~~l~~~~~~~~ 483 (797)
T PLN03063 428 WNITEVSSAIKEALNMSDEERETRHRHNFQYVKT---HSAQKWADDFMSELNDIIVEAE 483 (797)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhh---CCHHHHHHHHHHHHHHHhhhhh
Confidence 699999999999988 788888877778887654 8999999999999999887543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-06 Score=87.23 Aligned_cols=403 Identities=13% Similarity=0.084 Sum_probs=242.1
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHcCCHHHHH
Q 002431 9 MYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN-MANAWKEKGDIDLAI 87 (922)
Q Consensus 9 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~ 87 (922)
..+...++++.+.+++.+...|..+.+|.......+..++|+...++|.+++..--+ .+.|.. +-.+-...|+...+.
T Consensus 29 e~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~lYl~YVR~~~~~~~~~r 107 (656)
T KOG1914|consen 29 EAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKLYLSYVRETKGKLFGYR 107 (656)
T ss_pred HHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHccCcchHH
Confidence 344559999999999999999999999999999999999999999999999865332 344432 233334455555544
Q ss_pred HH----HHHHHhc---CCCcHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH-------
Q 002431 88 RY----YLVAIEL---RPNFADAWSNLASAYM---------RKGRLNEAAQCCRQALALNPLLVD-AHSNLGN------- 143 (922)
Q Consensus 88 ~~----~~~al~~---~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~------- 143 (922)
.. |+-+++. ++.....|...+..+. .+.+.+...+.|++++..--.+.+ .|...-.
T Consensus 108 ~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~ 187 (656)
T KOG1914|consen 108 EKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINI 187 (656)
T ss_pred HHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHH
Confidence 44 4444433 4555566766665543 233556667788888764322222 1111110
Q ss_pred ------HHHHcCCHHHHHHHHHHHHhh-------CCCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCCHHHHHH
Q 002431 144 ------LMKAQGLVQEAYSCYLEALRI-------QPTFAIAWSNLAGLFMESGDL--NRALQYYKEAVKLKPTFPDAYLN 208 (922)
Q Consensus 144 ------~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~ 208 (922)
+.-....|..|...+++.... +|.-+ ..|-. -++.+. |.+
T Consensus 188 ~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp-----------~~~T~~e~~qv~~--------------W~n 242 (656)
T KOG1914|consen 188 ITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVP-----------PKGTKDEIQQVEL--------------WKN 242 (656)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCC-----------CCCChHHHHHHHH--------------HHH
Confidence 111122233344433333221 00000 00000 011111 111
Q ss_pred HHHHHHHcCCh--------HHHHHHHHHHHhhCCC-hhHHHhHHH-------HHHHcCC-------hHHHHHHHHHHHhc
Q 002431 209 LGNVYKALGMP--------QEAIMCYQRAVQTRPN-AIAFGNLAS-------TYYERGQ-------ADMAILYYKQAIGC 265 (922)
Q Consensus 209 l~~~~~~~g~~--------~~A~~~~~~~~~~~p~-~~~~~~l~~-------~~~~~g~-------~~~A~~~~~~~l~~ 265 (922)
+...-...+-- ....-.+++++..-+- ++.|+..+. .+...|+ .+++..+|++++..
T Consensus 243 ~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~ 322 (656)
T KOG1914|consen 243 WIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG 322 (656)
T ss_pred HHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 11111111000 0111223333322221 333333222 2333332 45666777776632
Q ss_pred -CCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCh-HHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchh
Q 002431 266 -DPRFLEAYNNLGNALKDVG---RVDEAIQCYNQCLSLQPSHP-QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP 340 (922)
Q Consensus 266 -~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 340 (922)
...+...++.++..-...- +.+.....+++++.....++ -++..+...-.+..-.+.|..+|.++-+.......+
T Consensus 323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV 402 (656)
T KOG1914|consen 323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence 2223334555544333322 36777788888887654443 366667777777777889999999988765444344
Q ss_pred hhhHHH-HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CCC-cHHHHHHHHHHH
Q 002431 341 FNNLAV-IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI--RPT-MAEAHANLASAY 416 (922)
Q Consensus 341 ~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~la~~~ 416 (922)
+..-|. -|...++.+-|...|+-.++..++.+..-......+..+++-..|...|++++.. .++ ..++|..+...-
T Consensus 403 fVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE 482 (656)
T KOG1914|consen 403 FVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE 482 (656)
T ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH
Confidence 433333 2556789999999999999999999999999999999999999999999999987 333 357888888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCC
Q 002431 417 KDSGHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 417 ~~~g~~~~A~~~~~~al~~~p 437 (922)
..-|+...++++-++.....|
T Consensus 483 S~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 483 SNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HhcccHHHHHHHHHHHHHhcc
Confidence 899999999999888888777
|
|
| >PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.2e-11 Score=110.38 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=88.1
Q ss_pred cEEEEecCCCC--CCCHHHHH-HHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccC
Q 002431 713 KFIFACFNQLY--KMDPEIFN-TWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 789 (922)
Q Consensus 713 ~~~~~~~~~~~--K~~~~~~~-~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~ 789 (922)
.++||.+++.. |....+++ +|.++.++.|+..|.|+|.++. ++++. . .++|+|.|.+ +++..+++.
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~---~l~~~-----~-~~~v~~~g~~--~e~~~~l~~ 70 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD---ELKRL-----R-RPNVRFHGFV--EELPEILAA 70 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS----HHCCH-----H-HCTEEEE-S---HHHHHHHHC
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH---HHHHh-----c-CCCEEEcCCH--HHHHHHHHh
Confidence 36788888765 89999999 9999999999999999998654 24433 2 4699999998 589999999
Q ss_pred CcEEecCCC-CCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcC
Q 002431 790 ADLFLDTPL-CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALD 859 (922)
Q Consensus 790 ~dv~l~~~~-~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d 859 (922)
+||++.|+. .++ +++++|+|++|+|||+... .+. .+....|..- ++.+|++++++++.+|..|
T Consensus 71 ~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~-----~~~~~~~~~~-~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 71 ADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-GAE-----GIVEEDGCGV-LVANDPEELAEAIERLLND 135 (135)
T ss_dssp -SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-HCH-----CHS---SEEE-E-TT-HHHHHHHHHHHHH-
T ss_pred CCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-chh-----hheeecCCeE-EECCCHHHHHHHHHHHhcC
Confidence 999999975 445 8999999999999998665 111 1222224444 6678999999999999875
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-06 Score=94.62 Aligned_cols=432 Identities=13% Similarity=0.061 Sum_probs=277.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122 (922)
Q Consensus 43 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 122 (922)
....+++.+|+....+.++..|+...+....|..+.+.|+.++|..+++..-...+++..++..+-.+|..+|++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 35668899999999999999999999999999999999999999988888877888888899999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-cCCH---------HHHHHHH
Q 002431 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME-SGDL---------NRALQYY 192 (922)
Q Consensus 123 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~---------~~A~~~~ 192 (922)
+|+++...+|+ .+....+-.+|.+.+.|.+-.+.--++.+..|+++..+-....++.+ .... .-|...+
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 99999999999 88888888899999988887777777777888887654444444433 2222 2355566
Q ss_pred HHHHhcC-CCCHH-HHHHHHHHHHHcCChHHHHHHHH-HHHhhCCC--hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCC
Q 002431 193 KEAVKLK-PTFPD-AYLNLGNVYKALGMPQEAIMCYQ-RAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDP 267 (922)
Q Consensus 193 ~~~l~~~-p~~~~-~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 267 (922)
++.++.. +-... -....-.++..+|++++|.+.+. ...+..+. ...-......+...+++.+-.++..+++...+
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 6666655 22211 12233356677899999999994 44444444 33334667778888999999999999998888
Q ss_pred CcHHHHHH-HHHHH------------HHcCCHHHHHHHHHHHHhhCCCChH-HHHhHHHHHHHcCChhHHHHHHHHHHhc
Q 002431 268 RFLEAYNN-LGNAL------------KDVGRVDEAIQCYNQCLSLQPSHPQ-ALTNLGNIYMEWNMLPAAASYYKATLAV 333 (922)
Q Consensus 268 ~~~~~~~~-l~~~~------------~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~~ 333 (922)
++..++.. .-.++ ...+..+...+..++.+......+. ++..+-.-+..-|+.+++...|-+-.-.
T Consensus 258 Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~ 337 (932)
T KOG2053|consen 258 DDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGD 337 (932)
T ss_pred cchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCC
Confidence 87322222 11111 1112233333333333332122222 3333333334557777766555332222
Q ss_pred CC------------------------------CCc---hh---hhhHHHHHHHcCCH-----HHHHHHHHHHH-------
Q 002431 334 TT------------------------------GLS---AP---FNNLAVIYKQQGNY-----ADAISCYNEVL------- 365 (922)
Q Consensus 334 ~~------------------------------~~~---~~---~~~la~~~~~~g~~-----~~A~~~~~~al------- 365 (922)
.| ... .. +.....+....|.+ +.-..++++..
T Consensus 338 kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gl 417 (932)
T KOG2053|consen 338 KPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGL 417 (932)
T ss_pred CcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccc
Confidence 11 100 00 11111111222321 12222222221
Q ss_pred cc----CCC---CHHHHHH-----HHHHHHHhCC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002431 366 RI----DPL---AADGLVN-----RGNTYKEIGR---VTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 430 (922)
Q Consensus 366 ~~----~p~---~~~~~~~-----l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 430 (922)
+. .|. ..+.+.. +...+.+.++ .-+|+-.++..+..+|.+......+..+|.-.|-+..|.+.|+
T Consensus 418 s~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~ 497 (932)
T KOG2053|consen 418 SLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYK 497 (932)
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 11 111 1222222 3344555544 5678888999999999999999999999999999999999998
Q ss_pred HHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHHHHHHhc
Q 002431 431 QALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVN 475 (922)
Q Consensus 431 ~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 475 (922)
.+--.+-.....-+.+...+...|.|..+...+.....++.....
T Consensus 498 tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~k 542 (932)
T KOG2053|consen 498 TLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDSSLK 542 (932)
T ss_pred hcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhhhhh
Confidence 765444444444455555566667888887777777766655443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.8e-09 Score=107.28 Aligned_cols=153 Identities=26% Similarity=0.241 Sum_probs=102.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHH
Q 002431 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAV 346 (922)
Q Consensus 267 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 346 (922)
|....+++..+..+...|++++|+..++..+...|+|+..+...+.++.+.++.++|.+.+++++...|.....+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 45555666666666666777777777777666667766666666777777777777777777777666666666666677
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHH
Q 002431 347 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 426 (922)
Q Consensus 347 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 426 (922)
.|.+.|++.+|+..++..+..+|+++..|..++..|..+|+..+|.. ..+..|...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHH
Confidence 77777777777777766666666666777777766666666555432 3445556666666666
Q ss_pred HHHHHHHhcC
Q 002431 427 KSYKQALLLR 436 (922)
Q Consensus 427 ~~~~~al~~~ 436 (922)
..+..+.+..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 6666666654
|
|
| >PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-10 Score=133.96 Aligned_cols=177 Identities=12% Similarity=0.111 Sum_probs=127.7
Q ss_pred CCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCC----eEEEEecCCh----hhHHHHHHHHHHc--------CC-CC-C
Q 002431 711 EDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPA----AGEMRLRAYAVAQ--------GV-QP-D 770 (922)
Q Consensus 711 ~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~~----~~~~~l~~~~~~~--------g~-~~-~ 770 (922)
++..++++++|+. |+.+..+++|.++++..|+ .+|+++|.|. .....+++.+.+. |. +. .
T Consensus 263 ~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~p 342 (726)
T PRK14501 263 RGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTP 342 (726)
T ss_pred CCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcce
Confidence 3557888999874 9999999999999999996 6788886331 1134555555443 21 11 1
Q ss_pred ceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHc-----CCCeeeecCCcchhhhHHH-HHHhcCCCCcccc
Q 002431 771 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWA-----GLPMITLPLEKMATRVAGS-LCLATGLGEEMIV 843 (922)
Q Consensus 771 rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~-----g~Pvv~~~~~~~~~r~~~~-~~~~~g~~~~~i~ 843 (922)
.+.|.|.++.++..++|+.+||||.|+..+| |++++|||+| |+|||+-. .|++ .+. ...+|.
T Consensus 343 v~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~-------~G~~~~l~----~~llv~ 411 (726)
T PRK14501 343 IHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEM-------AGAAAELA----EALLVN 411 (726)
T ss_pred EEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecc-------cchhHHhC----cCeEEC
Confidence 3567788999999999999999999999999 9999999999 45666322 2211 110 121332
Q ss_pred -CCHHHHHHHHHHHhcCH-HHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHh
Q 002431 844 -NSMKEYEERAVSLALDR-QKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHC 901 (922)
Q Consensus 844 -~~~~~~~~~~~~l~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~ 901 (922)
.|++++++++.++++++ +.+....+++++.+. .||+..+++++.+.|+++|....
T Consensus 412 P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~---~~~~~~w~~~~l~~l~~~~~~~~ 468 (726)
T PRK14501 412 PNDIEGIAAAIKRALEMPEEEQRERMQAMQERLR---RYDVHKWASDFLDELREAAEKNK 468 (726)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHhhhh
Confidence 58999999999988753 444444456777653 49999999999999999997653
|
|
| >TIGR00215 lpxB lipid-A-disaccharide synthase | Back alignment and domain information |
|---|
Probab=99.14 E-value=4e-10 Score=122.97 Aligned_cols=257 Identities=14% Similarity=0.108 Sum_probs=150.7
Q ss_pred HHHHHHHHhCCCeEEEcCCCcCCCC-chhhhhcC-CCceEEe----ccccCCCCCCCcccEEEecCccCCcCccC-CCcc
Q 002431 602 DMIAKLINEDKIQILINLNGYTKGA-RNEIFAMQ-PAPIQVS----YMGFPGTTGASYIDYLVTDEFVSPLRYAH-IYSE 674 (922)
Q Consensus 602 ~~~~~~i~~~~~dil~~~~~~~~~~-~~~~~~~~-~apvq~~----~~g~~~t~g~~~~d~~~~d~~~~~~~~~~-~~~e 674 (922)
.++.+.|++.++|++|-.+| ...+ ++...+++ .-|+..- -|.++.. ....-...+|.+++....+. .|.+
T Consensus 79 ~~~~~~l~~~kPd~vi~~g~-~~~~~~~a~aa~~~gip~v~~i~P~~waw~~~--~~r~l~~~~d~v~~~~~~e~~~~~~ 155 (385)
T TIGR00215 79 KEVVQLAKQAKPDLLVGIDA-PDFNLTKELKKKDPGIKIIYYISPQVWAWRKW--RAKKIEKATDFLLAILPFEKAFYQK 155 (385)
T ss_pred HHHHHHHHhcCCCEEEEeCC-CCccHHHHHHHhhCCCCEEEEeCCcHhhcCcc--hHHHHHHHHhHhhccCCCcHHHHHh
Confidence 46788899999999987775 3222 22113322 2466542 1233311 11122224566665543322 2221
Q ss_pred ceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecC--CC---CCCCHHHHHHHHHHHhhCCCeEEEEec
Q 002431 675 KLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFN--QL---YKMDPEIFNTWCNILRRVPNSALWLLR 749 (922)
Q Consensus 675 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~--~~---~K~~~~~~~~~~~il~~~p~~~l~~~~ 749 (922)
. ..+..++ .++.........+.....|+.+|++++.++++.+. |. .|+++.++++...+.+..|+.++++.+
T Consensus 156 ~--g~~~~~v-GnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~ 232 (385)
T TIGR00215 156 K--NVPCRFV-GHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPV 232 (385)
T ss_pred c--CCCEEEE-CCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 0 1121111 11110000000011223577899988776665442 43 378999999999998889999886654
Q ss_pred CChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHH
Q 002431 750 FPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAG 829 (922)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~ 829 (922)
.+....+.+++...+.|. ..+|.+.+. +...+|+.+|+++.++ |++++|+|++|+|+|.....+.-+..-+
T Consensus 233 ~~~~~~~~~~~~~~~~~~-~~~v~~~~~----~~~~~l~aADl~V~~S----Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~ 303 (385)
T TIGR00215 233 VNFKRRLQFEQIKAEYGP-DLQLHLIDG----DARKAMFAADAALLAS----GTAALEAALIKTPMVVGYRMKPLTFLIA 303 (385)
T ss_pred CCchhHHHHHHHHHHhCC-CCcEEEECc----hHHHHHHhCCEEeecC----CHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence 333336667777777777 467776653 2234689999999888 6677799999999997744333333332
Q ss_pred HHH-H--hcCC----------CCcccc--CCHHHHHHHHHHHhcCH----HHHHHHHHHHHhhc
Q 002431 830 SLC-L--ATGL----------GEEMIV--NSMKEYEERAVSLALDR----QKLQALTNKLKSVR 874 (922)
Q Consensus 830 ~~~-~--~~g~----------~~~~i~--~~~~~~~~~~~~l~~d~----~~~~~~~~~~~~~~ 874 (922)
..+ + ..++ || ++- -+++...+.+.+|..|+ +.++++++.+.+..
T Consensus 304 ~~~~~~~~~~~~nil~~~~~~pe-l~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 366 (385)
T TIGR00215 304 RRLVKTDYISLPNILANRLLVPE-LLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELR 366 (385)
T ss_pred HHHHcCCeeeccHHhcCCccchh-hcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence 221 1 1222 33 442 36889999999999999 99999998887654
|
Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-09 Score=96.44 Aligned_cols=102 Identities=9% Similarity=0.042 Sum_probs=76.3
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS 109 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 109 (922)
++..+..+.+|..++..|++++|.+.|+-+...+|.+...|+.||.++..+|++++|+..|.+++.++|+++..+..+|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 55566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC
Q 002431 110 AYMRKGRLNEAAQCCRQALALN 131 (922)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~l~~~ 131 (922)
+++..|+.+.|.+.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 7777777777777777776654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-06 Score=93.49 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHhcCCCCH------HHHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 421 HVEAAIKSYKQALLLRPDFP------EATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 421 ~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
+..+.+.-.+.+++. |..+ ..+..++..+....+|..|.+.+.++..
T Consensus 1306 D~~~~i~qc~~llee-p~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~ 1358 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEE-PILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQK 1358 (1416)
T ss_pred hHHHHHHHHHHHhhC-cCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhh
Confidence 555566666666554 3322 3455667777777888888877776654
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-05 Score=81.79 Aligned_cols=404 Identities=17% Similarity=0.097 Sum_probs=224.6
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcC---CCc----H
Q 002431 35 NLLLLGAIYYQLH--DYDMCIARNEEALRLEPRF---AECYGNMANAWK-EKGDIDLAIRYYLVAIELR---PNF----A 101 (922)
Q Consensus 35 ~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~---p~~----~ 101 (922)
++..+|..+...| +...++++++......|.+ +.+...+|..++ ...+++.|...++++..+. |+. .
T Consensus 9 aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf 88 (629)
T KOG2300|consen 9 ALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKF 88 (629)
T ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhh
Confidence 4445555555555 5566666666655555443 344455554433 3455666666666665442 221 2
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC---cHHHH
Q 002431 102 DAWSNLASAYMRKG-RLNEAAQCCRQALALNPLLV----DAHSNLGNLMKAQGLVQEAYSCYLEALRI-QPT---FAIAW 172 (922)
Q Consensus 102 ~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~---~~~~~ 172 (922)
+++..++.+|.... .+..|...+.++++.....+ ...+.++.+..-..++..|.+.+.--... ++. .....
T Consensus 89 ~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ 168 (629)
T KOG2300|consen 89 QAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRML 168 (629)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHH
Confidence 34455566665555 55666666666666554333 23445566666666666666553211111 010 01111
Q ss_pred HHH--HHHHHHcCC---HHHHHHHHHHHHhcCCCCHH-------HHHHH-HHHHHHcCChHHHHHHHHHHHhh----C--
Q 002431 173 SNL--AGLFMESGD---LNRALQYYKEAVKLKPTFPD-------AYLNL-GNVYKALGMPQEAIMCYQRAVQT----R-- 233 (922)
Q Consensus 173 ~~l--a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~-------~~~~l-~~~~~~~g~~~~A~~~~~~~~~~----~-- 233 (922)
+.+ +.++....+ ...+.....++.+....++. .|..+ ...|...|+...+...++++... .
T Consensus 169 ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~ 248 (629)
T KOG2300|consen 169 FTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTS 248 (629)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCC
Confidence 111 112222222 23333333444333222221 11122 22233456655555555443321 0
Q ss_pred -----------CChh--HHHhH----HHHH-------HHcCChHHHHHHHHHHHhc------CCCcHH--------HHHH
Q 002431 234 -----------PNAI--AFGNL----ASTY-------YERGQADMAILYYKQAIGC------DPRFLE--------AYNN 275 (922)
Q Consensus 234 -----------p~~~--~~~~l----~~~~-------~~~g~~~~A~~~~~~~l~~------~p~~~~--------~~~~ 275 (922)
|... .|.-. +.+| ...|-+++|.++-++++.. .+.... .+-.
T Consensus 249 ~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~ 328 (629)
T KOG2300|consen 249 SRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEH 328 (629)
T ss_pred CCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 1111 11000 1111 2345677777777777632 121111 2334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC---CC-------ChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCC-C--chhhh
Q 002431 276 LGNALKDVGRVDEAIQCYNQCLSLQ---PS-------HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG-L--SAPFN 342 (922)
Q Consensus 276 l~~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~--~~~~~ 342 (922)
++.+-.-.|++.+|++....+.+.. |. .+.+.+.+|......+.++.|...|..+.+.... + ...-.
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4555666799999999988887753 43 2446777888888889999999999999877543 2 23355
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHccCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------cHHHH
Q 002431 343 NLAVIYKQQGNYADAISCYNEVLRIDPLA-------ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT------MAEAH 409 (922)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~ 409 (922)
++|..|.+.|+-+.-.+.++..-..+... ..+++..|...+.++++.||...+.+.++.... ..-.+
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~L 488 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSL 488 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence 78999999888766555555443222111 336777888889999999999999999987521 12345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 410 ANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 410 ~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
..|+.+....|+..++.+...-++++...
T Consensus 489 vLLs~v~lslgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 489 VLLSHVFLSLGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred HHHHHHHHHhcchHHHHhccchHHHHHhc
Confidence 66888889999999999999888887543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.3e-09 Score=113.92 Aligned_cols=107 Identities=13% Similarity=0.161 Sum_probs=54.9
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
..|..++..|+|++|+..|++++..+|++..+++.+|.++...|++++|+..++++++.+|.++.+++.+|.++...|++
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002431 84 DLAIRYYLVAIELRPNFADAWSNLASA 110 (922)
Q Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~la~~ 110 (922)
++|+..|+++++++|++..+...++.+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 555555555555555544444444333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.6e-08 Score=110.69 Aligned_cols=218 Identities=12% Similarity=0.167 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHHHcCChHHHHHH
Q 002431 151 VQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL-KPTF----PDAYLNLGNVYKALGMPQEAIMC 225 (922)
Q Consensus 151 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~----~~~~~~l~~~~~~~g~~~~A~~~ 225 (922)
-.+..+-|++.+..+|++...|..+.....+.++.++|.+..++++.. ++.. ..+|..+.++...-|.-+...+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 334566778888888999999999988899999999999999998873 3332 23566666666666777788888
Q ss_pred HHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C
Q 002431 226 YQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS--H 303 (922)
Q Consensus 226 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~ 303 (922)
|+++.+.......+..|..+|...+++++|.++++.+++...+....|..++..++...+-+.|..++.++++.-|. +
T Consensus 1520 FeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1520 FERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 88888877667788888889999999999999999988877777788888899888888888888999998888777 6
Q ss_pred hHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccC
Q 002431 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 368 (922)
Q Consensus 304 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 368 (922)
.+.....+.+-++.|+.+.+..+|+..+...|.-...|+-++..-.++|+.+.+..+|++++.+.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 67777888888888888888888888888888888888888888888888888888888887654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.5e-08 Score=97.92 Aligned_cols=182 Identities=14% Similarity=0.031 Sum_probs=135.5
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHH
Q 002431 31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC---YGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAW 104 (922)
Q Consensus 31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 104 (922)
.++..++..|..++..|++++|++.|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 357778889999999999999999999999999987544 4889999999999999999999999998775 5578
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002431 105 SNLASAYMRKG---------------R---LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166 (922)
Q Consensus 105 ~~la~~~~~~g---------------~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 166 (922)
+.+|.++...+ + ..+|+..|++.++..|+..-+- +|...+..+..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~--------------~A~~rl~~l~~--- 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT--------------DATKRLVFLKD--- 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH--------------HHHHHHHHHHH---
Confidence 88887754443 1 3578889999999999764321 11111111100
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002431 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF---PDAYLNLGNVYKALGMPQEAIMCYQRA 229 (922)
Q Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (922)
.-..--...+..|.+.|.+..|+.-++.+++..|+. .+++..++..|...|..++|.+....+
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 011222467788888888888888888888877765 457888888888899888888776654
|
|
| >cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-09 Score=117.57 Aligned_cols=160 Identities=10% Similarity=0.037 Sum_probs=105.5
Q ss_pred CcEEEEecCCCC-CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 712 DKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 712 ~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
+.+++|.++++. |...+++ .++.+..|+..|+|+|.++. ..... .... .++|.|+|.+++++...+++.+
T Consensus 204 ~~~~i~y~G~l~~~~d~~ll---~~la~~~p~~~~vliG~~~~-~~~~~---~~~~--~~nV~~~G~~~~~~l~~~l~~~ 274 (373)
T cd04950 204 PRPVIGYYGAIAEWLDLELL---EALAKARPDWSFVLIGPVDV-SIDPS---ALLR--LPNVHYLGPKPYKELPAYLAGF 274 (373)
T ss_pred CCCEEEEEeccccccCHHHH---HHHHHHCCCCEEEEECCCcC-ccChh---Hhcc--CCCEEEeCCCCHHHHHHHHHhC
Confidence 456777777665 5544444 45666789999999998722 11111 1112 3789999999999999999999
Q ss_pred cEEecCCCCC-----C-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHh-cCHHHH
Q 002431 791 DLFLDTPLCN-----A-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLA-LDRQKL 863 (922)
Q Consensus 791 dv~l~~~~~~-----g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~-~d~~~~ 863 (922)
||++.|+..+ + ++.++|+|+||+|||+.+.+ .+....+ ...++..|.+++++++.+.+ .+...+
T Consensus 275 Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~--------~~~~~~~-~~~~~~~d~~~~~~ai~~~l~~~~~~~ 345 (373)
T cd04950 275 DVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLP--------EVRRYED-EVVLIADDPEEFVAAIEKALLEDGPAR 345 (373)
T ss_pred CEEecCCccchhhhcCCcchHHHHhccCCCEEecCcH--------HHHhhcC-cEEEeCCCHHHHHHHHHHHHhcCCchH
Confidence 9999997532 3 67899999999999975432 1222222 22144568999999999954 333322
Q ss_pred HHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 864 QALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
...+. .. ...+|++..+++++...++
T Consensus 346 ~~~~~---~~---~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 346 ERRRL---RL---AAQNSWDARAAEMLEALQE 371 (373)
T ss_pred HHHHH---HH---HHHCCHHHHHHHHHHHHHh
Confidence 22111 11 2238999999999865543
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.9e-08 Score=96.07 Aligned_cols=170 Identities=20% Similarity=0.214 Sum_probs=114.6
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMAN 75 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 75 (922)
++..|..+++.|+|.+|+..|+++....|.+ ..+.+.+|.+++..|++++|+..+++.++..|++ ..+++.+|.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 4678888999999999999999998887754 6778888999999999999999999999888875 467888888
Q ss_pred HHHHcC-----------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002431 76 AWKEKG-----------DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL 144 (922)
Q Consensus 76 ~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 144 (922)
+++... ...+|+..|+..++..|++..+- +|...+..+.. ....--+..|..
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~~ia~~ 150 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHHHHHHH
Confidence 766542 23477778888888777753221 11111111100 011223456778
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHcCCHHHH
Q 002431 145 MKAQGLVQEAYSCYLEALRIQPTFA---IAWSNLAGLFMESGDLNRA 188 (922)
Q Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A 188 (922)
|.+.|.+..|+..++.+++..|+.. .++..++..|.+.|..+.|
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 8888888888888888888877764 4667777888888877744
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-06 Score=92.99 Aligned_cols=223 Identities=18% Similarity=0.205 Sum_probs=119.1
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH--------Hh---cCCCcHHHHHHHHHHHHH
Q 002431 11 KSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEA--------LR---LEPRFAECYGNMANAWKE 79 (922)
Q Consensus 11 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------l~---~~p~~~~~~~~la~~~~~ 79 (922)
..|+.+.|.+..+-+- +..+|-.++..+.+..+.+-|.-++-.+ ++ .+++ +.-...+....+
T Consensus 740 tiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLAie 812 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLAIE 812 (1416)
T ss_pred EeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHHHH
Confidence 3467777776665542 3456777777777666666555443222 11 1222 233344555667
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 80 KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYL 159 (922)
Q Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (922)
.|..++|..+|.+.-. +-.+-..|...|.+++|.++.+.--+++ .-..|+..+..+...++.+.|+++|+
T Consensus 813 LgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 7777888888877543 3344556667777777776655432222 23467777777777777777777776
Q ss_pred HHH----------hhCCC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 002431 160 EAL----------RIQPT----------FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 219 (922)
Q Consensus 160 ~al----------~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~ 219 (922)
++- ..+|. +...|.-.|..+...|+.+.|+.+|..+. -|+.+.++.+-+|+.
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~qGk~ 954 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQGKT 954 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeeccCc
Confidence 542 11221 12233334444444455555555554432 233344444444554
Q ss_pred HHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHH
Q 002431 220 QEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQA 262 (922)
Q Consensus 220 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 262 (922)
++|-.+.++ ..+..+.+.++..|...|++.+|+..|.++
T Consensus 955 ~kAa~iA~e----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 955 DKAARIAEE----SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hHHHHHHHh----cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 444443332 122344455555555555555555555544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-08 Score=109.86 Aligned_cols=111 Identities=22% Similarity=0.218 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 115 (922)
+...|..++..|+|++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++.++|+++.+++.+|.++...|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 44556667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002431 116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146 (922)
Q Consensus 116 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 146 (922)
++++|+..|+++++++|++..+...++.+..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 7777777777777777777766666555543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-07 Score=94.46 Aligned_cols=297 Identities=16% Similarity=0.209 Sum_probs=179.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCC---hhHHHhHHHHHH
Q 002431 178 LFMESGDLNRALQYYKEAVKLKPTFP---DAYLNLGNVYKALGMPQEAIMCYQRAVQT----RPN---AIAFGNLASTYY 247 (922)
Q Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~l~~~~~ 247 (922)
-++...++++|+..+.+.+..-.+.. ..+-.+..+...+|.+++++..--..+.. +.. .+++.+++..+.
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444322211 12333445555666666555443332221 111 456667777777
Q ss_pred HcCChHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHhHHHHHHH
Q 002431 248 ERGQADMAILYYKQAIGCDPR-----FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH------PQALTNLGNIYME 316 (922)
Q Consensus 248 ~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~ 316 (922)
+..++.+++.+-+..++.... .......++.++..++.++++++.|+++++...++ -.++..++.++..
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 777777777666666543211 12455567777777777888888888877763322 1366777888888
Q ss_pred cCChhHHHHHHHHHHhcCCC----C------chhhhhHHHHHHHcCCHHHHHHHHHHHHccC------CCCHHHHHHHHH
Q 002431 317 WNMLPAAASYYKATLAVTTG----L------SAPFNNLAVIYKQQGNYADAISCYNEVLRID------PLAADGLVNRGN 380 (922)
Q Consensus 317 ~~~~~~A~~~~~~a~~~~~~----~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~ 380 (922)
..++++|.-+..++.++... + ..+.+.++..+..+|..-.|.++.+++.++. +.....+..+|.
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 88888888777777665322 1 2235677888888888888888888887652 233556777888
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHhcCCHHH-----HHHHHHHHHhcCCC----CH--HHH
Q 002431 381 TYKEIGRVTDAIQDYIRAITIRPT------MAEAHANLASAYKDSGHVEA-----AIKSYKQALLLRPD----FP--EAT 443 (922)
Q Consensus 381 ~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~----~~--~~~ 443 (922)
+|...|+.+.|..-|+.+...... ..+++...++++....-..+ |++.-++++++... .. ...
T Consensus 255 IyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~h 334 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLH 334 (518)
T ss_pred HHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 888888888888888888765321 24455666666655443333 77776666665322 11 234
Q ss_pred HHHHHhhcccCChhhHhHHHHHHHHHHHHHh
Q 002431 444 CNLLHTLQCVCSWEDRDRMFSEVEGIIRRQV 474 (922)
Q Consensus 444 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 474 (922)
..+...|...|.-++-...+..+.+..+++.
T Consensus 335 crla~iYrs~gl~d~~~~h~~ra~~~~~e~~ 365 (518)
T KOG1941|consen 335 CRLASIYRSKGLQDELRAHVVRAHECVEETE 365 (518)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 4566667677766666666666666666553
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.4e-07 Score=86.47 Aligned_cols=254 Identities=17% Similarity=0.105 Sum_probs=140.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHH
Q 002431 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILY 258 (922)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 258 (922)
++-.|+|.+++..-++..... ........+.+.|..+|++...+....... .|...+...++......++.++-+.-
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK--ATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc--CChHHHHHHHHHHhhCcchhHHHHHH
Confidence 334455555555444433322 334444455555555555443332222111 12223333333333333333333333
Q ss_pred HHHHH-hc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 002431 259 YKQAI-GC-DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG 336 (922)
Q Consensus 259 ~~~~l-~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 336 (922)
+.+.+ .. ...+......-+.++...+++++|.+..... .+.++...-..++.+..+.+-|.+.++++.+.+.+
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 32222 11 1122223334455566666666666655542 23344444455566666666666666666655433
Q ss_pred CchhhhhHHHHHH----HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 002431 337 LSAPFNNLAVIYK----QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412 (922)
Q Consensus 337 ~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 412 (922)
.+...||..+. ..+++.+|.-+|+++-+..|..+..+...+.+...+|++++|...++.++..++++++++.++
T Consensus 170 --~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 --ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred --HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 22233333333 234677888888888887777788888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCHHHH-HHHHHHHHhcCCCCHHH
Q 002431 413 ASAYKDSGHVEAA-IKSYKQALLLRPDFPEA 442 (922)
Q Consensus 413 a~~~~~~g~~~~A-~~~~~~al~~~p~~~~~ 442 (922)
..+-...|...++ .+...+.....|+++.+
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 8888777766554 44556666667776543
|
|
| >COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-08 Score=109.57 Aligned_cols=176 Identities=17% Similarity=0.175 Sum_probs=132.9
Q ss_pred EEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 714 FIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 714 ~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
++++.+++. .|+.+.+++++..+....|+..++++|.++.....+...+.+.+. .+.|.|.|.++..+....++.+|
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~~ 278 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGL-EDNVKFLGYVPDEELAELLASAD 278 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCC-CCcEEEecccCHHHHHHHHHhCC
Confidence 455556653 589999999999998888888899999876523556667778887 58899999988777777888899
Q ss_pred EEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC-CHHHHHHHHHHHhcCHHHHHHHHHH
Q 002431 792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN-SMKEYEERAVSLALDRQKLQALTNK 869 (922)
Q Consensus 792 v~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~-~~~~~~~~~~~l~~d~~~~~~~~~~ 869 (922)
+++.|+.++| |.+++|||++|+|||+...+....-+. . |..+.++.. +.++++.++..+..+++.++.+...
T Consensus 279 ~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~-----~-~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 352 (381)
T COG0438 279 VFVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPEVVE-----D-GETGLLVPPGDVEELADALEQLLEDPELREELGEA 352 (381)
T ss_pred EEEeccccccchHHHHHHHhcCCcEEECCCCChHHHhc-----C-CCceEecCCCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999988777 999999999999999665543333332 1 111312222 5899999999999998777777764
Q ss_pred HHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 870 LKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
.++.. ...|+++.++..+.+.|.....
T Consensus 353 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 353 ARERV--EEEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred HHHHH--HHhcCHHHHHHHHHHHHHHHHh
Confidence 54544 2469999999999888877653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-07 Score=94.49 Aligned_cols=178 Identities=15% Similarity=0.039 Sum_probs=109.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 002431 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADA---WSNLASAYMRKGRLNEAAQCCRQALALNPLLV---DAH 138 (922)
Q Consensus 65 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~ 138 (922)
.++..++..|..+...|++++|++.|++++...|..+.+ .+.+|.++.+.+++++|+..+++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 356778888888999999999999999999988886554 47888999999999999999999999887654 466
Q ss_pred HHHHHHHHHcCC------------------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002431 139 SNLGNLMKAQGL------------------VQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP 200 (922)
Q Consensus 139 ~~la~~~~~~g~------------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 200 (922)
+.+|.++...+. ..+|+..|++.++..|++..+ .+|...+..+..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~--- 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKD--- 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHH---
Confidence 677766543321 234555555555555554321 111111111100
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhHHHhHHHHHHHcCChHHHHHHH
Q 002431 201 TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILYY 259 (922)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 259 (922)
.-..--+..+..|.+.|.+..|+.-++.+++..|+ .+++..+...|...|..++|....
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 01112234555566666666666666666665554 445555555555555555554443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.9e-07 Score=104.01 Aligned_cols=212 Identities=15% Similarity=0.092 Sum_probs=111.5
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 20 EHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL-EPR----FAECYGNMANAWKEKGDIDLAIRYYLVAI 94 (922)
Q Consensus 20 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al 94 (922)
+-|++.+..+|++...|........+.++.++|.+.+++++.. ++. ....|..+-+....-|.-+.-.+.|+++.
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555532 221 12233333333333444444555555555
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--cHHHH
Q 002431 95 ELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT--FAIAW 172 (922)
Q Consensus 95 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~ 172 (922)
+.... ...+..|..+|.+.+++++|.++++.+++...+....|..++..+.++++-++|..++.++++.-|. +....
T Consensus 1525 qycd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1525 QYCDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred Hhcch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 43221 3345555555555555555555555555555555555555555555555555555555555555554 44444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002431 173 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (922)
...|.+-++.|+.+.+..+|+..+..+|.-.+.|.-+++.-.+.|+.+.+..+|++++..
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555555555555555555555555555544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.8e-08 Score=89.14 Aligned_cols=105 Identities=22% Similarity=0.378 Sum_probs=85.7
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc---HHHHHHH
Q 002431 339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM---AEAHANL 412 (922)
Q Consensus 339 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 412 (922)
..++.+|..+...|++++|++.|+++++.+|++ ..+++.+|.++...|++++|+..|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456777888888888888888888888877765 5678888888888888888888888888887764 5678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 413 ASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 413 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
|.++.+.|++++|...++++++..|+++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888888876544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.7e-08 Score=97.48 Aligned_cols=122 Identities=20% Similarity=0.192 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhC---CHHHHHHHHH
Q 002431 320 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG---RVTDAIQDYI 396 (922)
Q Consensus 320 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~ 396 (922)
.+..+.-++.-+..+|++.+.|..||.+|..+|++..|...|.+++++.|++++.+..+|.++..+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4445556677778889999999999999999999999999999999999999999999998887764 4678899999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 397 RAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (922)
Q Consensus 397 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (922)
+++..+|++..+.+.||..++..|++.+|...++.+++..|.+..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999999887653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.4e-08 Score=88.57 Aligned_cols=99 Identities=18% Similarity=0.253 Sum_probs=50.5
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANA 76 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 76 (922)
+.+|..+.+.|++++|++.|++++..+|++ ..+++.+|.++...|++++|+..|++++...|++ +.++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 445555555555555555555555544433 3344555555555555555555555555544442 3445555555
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcH
Q 002431 77 WKEKGDIDLAIRYYLVAIELRPNFA 101 (922)
Q Consensus 77 ~~~~g~~~~A~~~~~~al~~~p~~~ 101 (922)
+...|++++|+..++++++..|++.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCCh
Confidence 5555555555555555555555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-07 Score=91.70 Aligned_cols=176 Identities=23% Similarity=0.216 Sum_probs=128.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAWS 105 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 105 (922)
++..++..|..++..|+|.+|++.|++++...|.. ..+.+.+|.++++.|++++|+..+++.++..|++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788999999999999999999999999988864 6789999999999999999999999999998875 45788
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 002431 106 NLASAYMRKG-----------RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 174 (922)
Q Consensus 106 ~la~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 174 (922)
.+|.+++... ...+|+..|+..++..|++..+- +|...+..+-+ .-..--..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~~ 146 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHHH
Confidence 8888766542 34477788888888877754321 11111111100 01122356
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCChHHHHH
Q 002431 175 LAGLFMESGDLNRALQYYKEAVKLKPTFPD---AYLNLGNVYKALGMPQEAIM 224 (922)
Q Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 224 (922)
+|..|.+.|.+..|+..++.+++..|+... ++..++..+.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 899999999999999999999999998754 78899999999999885543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.6e-08 Score=88.93 Aligned_cols=116 Identities=28% Similarity=0.201 Sum_probs=68.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHH
Q 002431 45 QLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAWSNLASAYMRKGRLN 118 (922)
Q Consensus 45 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 118 (922)
..++...+...++++++.+|+. ..+.+.+|.++...|++++|...|++++...|+. ..+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4555666666666666666655 3455556666666666666666666666655432 235556666666666666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (922)
Q Consensus 119 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (922)
+|+..++.. ...+..+.++..+|.++...|++++|+..|+++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666442 223334455666666666666666666666655
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.6e-08 Score=95.74 Aligned_cols=121 Identities=28% Similarity=0.248 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 002431 49 YDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG---RLNEAAQCCR 125 (922)
Q Consensus 49 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~ 125 (922)
.+..+.-++.-+..+|+|++.|..||.+|...|++..|...|.+++++.|++++.+..++.+++.+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4555556666677777777777777777777777777777777777777777777777777766543 3556777777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 002431 126 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 169 (922)
Q Consensus 126 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 169 (922)
++++.+|.+..+...++..++.+|++.+|...++.+++..|.+.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 77777777777777777777777777777777777777765543
|
|
| >TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1 | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-08 Score=113.20 Aligned_cols=164 Identities=13% Similarity=0.080 Sum_probs=127.7
Q ss_pred EEEEecCC-CCCCCHHHHHHHHHHHhhCCCeEEEEecCChh--hHHHHHHHHHHcCCC----------------------
Q 002431 714 FIFACFNQ-LYKMDPEIFNTWCNILRRVPNSALWLLRFPAA--GEMRLRAYAVAQGVQ---------------------- 768 (922)
Q Consensus 714 ~~~~~~~~-~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~--~~~~l~~~~~~~g~~---------------------- 768 (922)
+++...-| +.|..+.+++++.+++.++|++.|.+.|.+.. ....+++.+++.++.
T Consensus 322 ~I~v~idrL~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (519)
T TIGR03713 322 EIGFWIDGLSDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQT 401 (519)
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccc
Confidence 44444224 56999999999999999999999999887642 135676776777663
Q ss_pred ------CCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcc
Q 002431 769 ------PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM 841 (922)
Q Consensus 769 ------~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~ 841 (922)
.++|.|.|..+..+....|..+.+++|++..+| + |.+||+..|+|+| --|+ +-+-.-|.++ +
T Consensus 402 ~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI-nyg~--------~~~V~d~~NG-~ 470 (519)
T TIGR03713 402 DEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI-NKVE--------TDYVEHNKNG-Y 470 (519)
T ss_pred hhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee-ecCC--------ceeeEcCCCc-E
Confidence 179999998777789999999999999999999 6 9999999999999 2222 1111127778 7
Q ss_pred ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHH
Q 002431 842 IVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLER 891 (922)
Q Consensus 842 i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 891 (922)
+..|.+++.+++..++.++...+++....-+.+. .|+.+....++++
T Consensus 471 li~d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~---~yS~~~i~~kW~~ 517 (519)
T TIGR03713 471 IIDDISELLKALDYYLDNLKNWNYSLAYSIKLID---DYSSENIIERLNE 517 (519)
T ss_pred EeCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---HhhHHHHHHHHHh
Confidence 7799999999999999999988888887777653 3877666655544
|
This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.5e-08 Score=108.18 Aligned_cols=174 Identities=17% Similarity=0.158 Sum_probs=125.7
Q ss_pred CcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCC----eEEEEecCChh--------hHHHHHHHHHH----
Q 002431 703 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPAA--------GEMRLRAYAVA---- 764 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~--------~~~~l~~~~~~---- 764 (922)
+|+.+| +..++.++.|+. |+.+..+++|.++|++.|+ ++|+++|.+.. -+.++++.+.+
T Consensus 278 lr~~~~---~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~ 354 (487)
T TIGR02398 278 IRSELA---GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGR 354 (487)
T ss_pred HHHHcC---CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhc
Confidence 677776 567888999875 9999999999999999996 68888886631 12344444433
Q ss_pred ---cCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCC----CeeeecCCcchhhhHHHHHHhcC
Q 002431 765 ---QGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGL----PMITLPLEKMATRVAGSLCLATG 836 (922)
Q Consensus 765 ---~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~----Pvv~~~~~~~~~r~~~~~~~~~g 836 (922)
.|. ...+.|.+.++.++..++|+.+||+|.|+...| ++++.|+++|+. |+|. |+.+++. ..+
T Consensus 355 fg~~~~-~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLIL-------SefaGaa-~~l- 424 (487)
T TIGR02398 355 FARIGW-TPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVL-------SEFAGAA-VEL- 424 (487)
T ss_pred cCCCCC-ccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEE-------eccccch-hhc-
Confidence 255 356788999999999999999999999999999 999999999988 7773 4443221 111
Q ss_pred CCCcccc--CCHHHHHHHHHHHhcCH-HHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 837 LGEEMIV--NSMKEYEERAVSLALDR-QKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 837 ~~~~~i~--~~~~~~~~~~~~l~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
.+.+++ .|.++.++++.+.++.+ +.|++--+.+++.+.. +|...+++.+-...
T Consensus 425 -~~AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~---~d~~~W~~~fl~~l 480 (487)
T TIGR02398 425 -KGALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAVNY---YDVQRWADEFLAAV 480 (487)
T ss_pred -CCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHh
Confidence 121333 58999888877777654 3444444555665543 78888888776544
|
Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-06 Score=82.19 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=23.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 41 AIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAI 87 (922)
Q Consensus 41 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 87 (922)
+-++-.|+|..++..-++..... ...+....+.+.|..+|++...+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~ 61 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVI 61 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccc
Confidence 34455566666665555443322 44455555555555555554433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.2e-06 Score=85.26 Aligned_cols=289 Identities=18% Similarity=0.077 Sum_probs=219.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLR--TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
-+....-.|+-..|.+.-.+.-+.-..+ +-+..+-++...-.|+++.|.+-|+.++..-....-.+..|-......|.
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhccc
Confidence 3455566788899998888765433333 55666677888899999999999999875322222223333344457899
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH---HHHHHHH-HHHHcCCHHHHH
Q 002431 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN---PLLVD---AHSNLGN-LMKAQGLVQEAY 155 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~---~~~~la~-~~~~~g~~~~A~ 155 (922)
.+.|+.+-+.+....|.-+.++.......+..|+++.|+++.+...... ++..+ +-..-+. ...-..+...|.
T Consensus 170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 170 REAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 9999999999999999999999999999999999999999998775542 22221 2112122 222345688899
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH---HHhh
Q 002431 156 SCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR---AVQT 232 (922)
Q Consensus 156 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~ 232 (922)
..-.++.++.|+....-..-+..+++.|+..++-.+++.+.+..|. +++ +..|....--+.++.-+++ +.++
T Consensus 250 ~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~i----a~lY~~ar~gdta~dRlkRa~~L~sl 324 (531)
T COG3898 250 DDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDI----ALLYVRARSGDTALDRLKRAKKLESL 324 (531)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHH----HHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 9999999999999999899999999999999999999999998876 333 3334443333444444444 4445
Q ss_pred CCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Q 002431 233 RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV-GRVDEAIQCYNQCLSL 299 (922)
Q Consensus 233 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~ 299 (922)
.|+ .+.....+...+..|++..|...-+.+....|... .+..++.+-... |+-.++...+.++++-
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 676 88889999999999999999999999999999866 778888887665 9999999999999874
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=0.00024 Score=74.23 Aligned_cols=427 Identities=14% Similarity=0.104 Sum_probs=272.0
Q ss_pred hhhHHHHHHHcC--CHHHHHHHHHHHHhhCCCc---hHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcC---CC----cHH
Q 002431 2 HMALAHQMYKSG--SYKQALEHSNSVYERNPLR---TDNLLLLGAIY-YQLHDYDMCIARNEEALRLE---PR----FAE 68 (922)
Q Consensus 2 ~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~---p~----~~~ 68 (922)
++.+|..+-..| +...+++.++.++...|.+ +.....+|.++ ....+.+.|...++++..+. |. .-+
T Consensus 10 LlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~ 89 (629)
T KOG2300|consen 10 LLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQ 89 (629)
T ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhH
Confidence 456788888888 9999999999999877644 44556677655 55789999999999997553 32 246
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHH
Q 002431 69 CYGNMANAWKEKG-DIDLAIRYYLVAIELRPNFA----DAWSNLASAYMRKGRLNEAAQCCRQALALN-PL---LVDAHS 139 (922)
Q Consensus 69 ~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~---~~~~~~ 139 (922)
++..++.+|.... .+..|...+++++++..+.+ ...+.+++...-..++..|.+.+.-..+.. +. .....+
T Consensus 90 a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~f 169 (629)
T KOG2300|consen 90 AASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLF 169 (629)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHH
Confidence 7788999998877 88999999999999876654 355678888888999999998844322211 11 111222
Q ss_pred H--HHHHHHHcCCHHH---HHHHHHHHHhhCCCcH-------HHHHHHH-HHHHHcCCHHHHHHHHHHHHh---c-CCC-
Q 002431 140 N--LGNLMKAQGLVQE---AYSCYLEALRIQPTFA-------IAWSNLA-GLFMESGDLNRALQYYKEAVK---L-KPT- 201 (922)
Q Consensus 140 ~--la~~~~~~g~~~~---A~~~~~~al~~~p~~~-------~~~~~la-~~~~~~g~~~~A~~~~~~~l~---~-~p~- 201 (922)
. .+.++....+..+ +.....++.+....++ ..+..+- ..|...|+...+...+++..+ . .+.
T Consensus 170 tls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~ 249 (629)
T KOG2300|consen 170 TLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSS 249 (629)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCC
Confidence 2 2233333334333 3444444444332222 1222222 234455776666655554432 1 111
Q ss_pred -----------CHH-----------HHHHHHHH--HHHcCChHHHHHHHHHHHhhC------C-C--------hhHHHhH
Q 002431 202 -----------FPD-----------AYLNLGNV--YKALGMPQEAIMCYQRAVQTR------P-N--------AIAFGNL 242 (922)
Q Consensus 202 -----------~~~-----------~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~------p-~--------~~~~~~l 242 (922)
.+. ++..+... -...|-+++|.++-++++... + . ...+..+
T Consensus 250 ~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~i 329 (629)
T KOG2300|consen 250 RGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHI 329 (629)
T ss_pred CCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 011 11111111 123466777777777776531 1 1 1233445
Q ss_pred HHHHHHcCChHHHHHHHHHHHhc---CCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C--hHHHHh
Q 002431 243 ASTYYERGQADMAILYYKQAIGC---DPR-------FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS-H--PQALTN 309 (922)
Q Consensus 243 ~~~~~~~g~~~~A~~~~~~~l~~---~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~ 309 (922)
+.+-.-.|++.+|++....+.+. .|. .......+|......+.++.|...|..+.+.... + .....+
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nln 409 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLN 409 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 56666789999999988888743 444 2345677788888889999999999999887433 2 235567
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCC----------chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCC------CHH
Q 002431 310 LGNIYMEWNMLPAAASYYKATLAVTTGL----------SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL------AAD 373 (922)
Q Consensus 310 la~~~~~~~~~~~A~~~~~~a~~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~ 373 (922)
++..|.+.++-+.-.+.++. +.|.+ ..+++..|...+.++++.||...+.+.++.... ..-
T Consensus 410 lAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~ 486 (629)
T KOG2300|consen 410 LAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTAC 486 (629)
T ss_pred HHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 88999998776655554443 34442 234666778888999999999999999987521 123
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhC---CCcHHH---HHHHHHHHHhcCC--HHHHHHHHHH
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIR---PTMAEA---HANLASAYKDSGH--VEAAIKSYKQ 431 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~---~~~la~~~~~~g~--~~~A~~~~~~ 431 (922)
.+..++.+....|+..++.+...-+++.. |+.+.. ...+-.+|...|+ .+...+.|.+
T Consensus 487 ~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 487 SLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 66778999999999999999888887764 444332 2334456666666 4444444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-05 Score=80.20 Aligned_cols=291 Identities=18% Similarity=0.048 Sum_probs=224.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH
Q 002431 37 LLLGAIYYQLHDYDMCIARNEEALRLEPRF--AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF-ADAWSNLASAYMR 113 (922)
Q Consensus 37 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 113 (922)
+..|.+....|+-..|.+.-.+.-+.-..+ +-++..-++.-.-.|+++.|.+-|+.++. +|+. .--+..|-.-..+
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr 166 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR 166 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence 345667778899999999988887655544 44555567777889999999999999986 3432 1122333333457
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCcH-----HHHHHHHHHHHHcCCH
Q 002431 114 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI---QPTFA-----IAWSNLAGLFMESGDL 185 (922)
Q Consensus 114 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~-----~~~~~la~~~~~~g~~ 185 (922)
.|..+.|..+-+.+-...|....+....-...+..|+++.|+++.+..... .++.. ..+...+... -.-+.
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp 245 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADP 245 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCCh
Confidence 899999999999999999999999999999999999999999999876553 22221 1222222222 23468
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHH---
Q 002431 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQA--- 262 (922)
Q Consensus 186 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 262 (922)
..|...-.++.++.|+....-..-+..+.+.|+..++-.+++.+.+..|.+.++ ..|....--+.++.-++++
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L 321 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKL 321 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999998886543 3444444444455555444
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHc-CChhHHHHHHHHHHhcC
Q 002431 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW-NMLPAAASYYKATLAVT 334 (922)
Q Consensus 263 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~ 334 (922)
..+.|++.+.....+...+..|++..|..--+.+....|. ..++..++.+-... |+-.++...+.++++..
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 4679999999999999999999999999999999888876 45677778876655 99999999999998753
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3e-06 Score=87.83 Aligned_cols=456 Identities=15% Similarity=0.085 Sum_probs=252.4
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHH-HHhcCCHHHHHHHHHHHHhc-----CC----------CcH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAI-YYQLHDYDMCIARNEEALRL-----EP----------RFA 67 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~-----~p----------~~~ 67 (922)
..+...+..++|+..++++..+-..+..+...++..+.+ |++.|.... ...+++...+ .| +..
T Consensus 22 ~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~~gld~~~~t 100 (696)
T KOG2471|consen 22 CQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVSSGLSLKQGT 100 (696)
T ss_pred HHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchhcchhhhcch
Confidence 456677788999999999998887776655444554444 455554322 1222221111 11 235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----cH-HHHHHHHHHHHHcCCHHHHHHHHHH---HHHhC---C--C-
Q 002431 68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPN----FA-DAWSNLASAYMRKGRLNEAAQCCRQ---ALALN---P--L- 133 (922)
Q Consensus 68 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~-~~~~~la~~~~~~g~~~~A~~~~~~---~l~~~---p--~- 133 (922)
..++..|.+++....+..|++........-.. .+ ..-...-..+....+.++|+.++.- ++... + +
T Consensus 101 ~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~ 180 (696)
T KOG2471|consen 101 VMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNH 180 (696)
T ss_pred HHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 56778888888888888888777665543211 11 1222333444555566666655433 22210 0 0
Q ss_pred ------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 134 ------------------------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189 (922)
Q Consensus 134 ------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 189 (922)
...+.......+....+...+....+.+.....+.+.+....+..++..|++.+|.
T Consensus 181 ~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~ 260 (696)
T KOG2471|consen 181 IPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAM 260 (696)
T ss_pred cchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHH
Confidence 01122223334445555555555555555556677777777788888888888887
Q ss_pred HHHHHHH-hcCCC------C--HHHHHHHHHHHHHcCChHHHHHHHHHHHhh---------CC----------ChhHHHh
Q 002431 190 QYYKEAV-KLKPT------F--PDAYLNLGNVYKALGMPQEAIMCYQRAVQT---------RP----------NAIAFGN 241 (922)
Q Consensus 190 ~~~~~~l-~~~p~------~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~p----------~~~~~~~ 241 (922)
+.+...- ...+. . .-.++++|-+++..|.+.-+..+|.++++. .| .-+..++
T Consensus 261 KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYN 340 (696)
T KOG2471|consen 261 KLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYN 340 (696)
T ss_pred HHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHh
Confidence 7766541 11121 1 124577888888888888888888887741 11 1456677
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHH--H--------------Hhh---
Q 002431 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG---RVDEAIQCYNQ--C--------------LSL--- 299 (922)
Q Consensus 242 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~--a--------------l~~--- 299 (922)
.|..|...|++-.|.++|.++....-.++..|..++.++.... -.++......+ . ++.
T Consensus 341 cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~ 420 (696)
T KOG2471|consen 341 CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTY 420 (696)
T ss_pred hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccce
Confidence 7788888888888888888887777777778888877775431 11111111111 0 000
Q ss_pred --CCC---ChHHHHhHHHHHHHcCCh-----hHHHHHHHHHHhc----------------------------CC-CCc--
Q 002431 300 --QPS---HPQALTNLGNIYMEWNML-----PAAASYYKATLAV----------------------------TT-GLS-- 338 (922)
Q Consensus 300 --~p~---~~~~~~~la~~~~~~~~~-----~~A~~~~~~a~~~----------------------------~~-~~~-- 338 (922)
.+. -+..-..++.++.+.+-+ ..--..+.-+... .| ..+
T Consensus 421 ~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~ 500 (696)
T KOG2471|consen 421 VELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSA 500 (696)
T ss_pred eccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcch
Confidence 000 011111222222211100 0000000000000 00 001
Q ss_pred ---------hhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH-----HHHHHhCCHHHHHHHHHHHH-----
Q 002431 339 ---------APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG-----NTYKEIGRVTDAIQDYIRAI----- 399 (922)
Q Consensus 339 ---------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~al----- 399 (922)
.++-..+.+-...|+.-.|+..-++.++.. +-..++..+| .+++.+.+..+|...+.--+
T Consensus 501 ~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~-~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~ 579 (696)
T KOG2471|consen 501 FEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLA-DLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDD 579 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcc
Confidence 124456667778899999999999988763 3344444444 44556677777766543311
Q ss_pred -h-----------------hCCC----------c-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCHHHHH
Q 002431 400 -T-----------------IRPT----------M-----AEAHANLASAYKDSGHVEAAIKSYKQALLLRP--DFPEATC 444 (922)
Q Consensus 400 -~-----------------~~p~----------~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~ 444 (922)
. ++|. . ...+++||.+++-+|++++|..++..+..+-+ .++.+..
T Consensus 580 f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~ 659 (696)
T KOG2471|consen 580 FKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATV 659 (696)
T ss_pred cccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHH
Confidence 0 0111 1 23578899999999999999999998888877 4555555
Q ss_pred HHHHhhcccCChhhHhH
Q 002431 445 NLLHTLQCVCSWEDRDR 461 (922)
Q Consensus 445 ~l~~~~~~~~~~~~a~~ 461 (922)
.....-...|+..++..
T Consensus 660 lavyidL~~G~~q~al~ 676 (696)
T KOG2471|consen 660 LAVYIDLMLGRSQDALA 676 (696)
T ss_pred HHHHHHHhcCCCcchHH
Confidence 44444455566555543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-08 Score=80.48 Aligned_cols=67 Identities=37% Similarity=0.535 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 002431 371 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG-HVEAAIKSYKQALLLRP 437 (922)
Q Consensus 371 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 437 (922)
++..|..+|.++...|++++|+..|+++++.+|+++.+++++|.+|..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46677777888888888888888888888888888888888888888887 67888888888887776
|
... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.5e-07 Score=88.01 Aligned_cols=303 Identities=17% Similarity=0.154 Sum_probs=149.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--cHHHHHHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRT---DNLLLLGAIYYQLHDYDMCIARNEEALRL----EPR--FAECYGNM 73 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~l 73 (922)
+..|..++...++++|+..+.+.+..-.+.. ..+-.+..+...+|.|++++..--..+.. +.. .-+++..+
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777888777777775443222 22233445566677777666554333322 111 13456666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 002431 74 ANAWKEKGDIDLAIRYYLVAIELRPNF-----ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL------VDAHSNLG 142 (922)
Q Consensus 74 a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la 142 (922)
+..+.+..++.+++.+-+..+...... ..+...++.++.-.+.++++++.|+++++...++ ..++..+|
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg 169 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLG 169 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence 666666666666666665555542211 2344455566666666666666666665543221 12455556
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 002431 143 NLMKAQGLVQEAYSCYLEALRIQPT----FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 218 (922)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 218 (922)
.++....++++|.-+..++.++... +...-+ ...+.+.++..+..+|.
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky----------------------------r~~~lyhmaValR~~G~ 221 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY----------------------------RAMSLYHMAVALRLLGR 221 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH----------------------------HHHHHHHHHHHHHHhcc
Confidence 6666666666665555555543111 100000 01133444444444555
Q ss_pred hHHHHHHHHHHHhhC---CC----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcC----C--CcHHHHHHHHHHHHHcCC
Q 002431 219 PQEAIMCYQRAVQTR---PN----AIAFGNLASTYYERGQADMAILYYKQAIGCD----P--RFLEAYNNLGNALKDVGR 285 (922)
Q Consensus 219 ~~~A~~~~~~~~~~~---p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~----p--~~~~~~~~l~~~~~~~g~ 285 (922)
...|.+..+++.++. .+ ......++.+|...|+.+.|..-|+++...- . ...+++...+.++....-
T Consensus 222 LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~ 301 (518)
T KOG1941|consen 222 LGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRL 301 (518)
T ss_pred cccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 555555544444321 11 2233444555555555555555555554221 1 112233334444333222
Q ss_pred HH-----HHHHHHHHHHhhCC----CC--hHHHHhHHHHHHHcCChhHHHHHHHHHHhc
Q 002431 286 VD-----EAIQCYNQCLSLQP----SH--PQALTNLGNIYMEWNMLPAAASYYKATLAV 333 (922)
Q Consensus 286 ~~-----~A~~~~~~al~~~p----~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 333 (922)
.. .|++.-.++++... .. -.....++.+|...|.-++-...+..+-+.
T Consensus 302 ~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 302 QNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred hhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 22 25555555554422 11 246677788887777766666666554443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.83 E-value=4e-08 Score=84.02 Aligned_cols=99 Identities=34% Similarity=0.619 Sum_probs=83.5
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 419 (922)
++..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|++.++++++..|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 002431 420 GHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 420 g~~~~A~~~~~~al~~~p~ 438 (922)
|++++|...++++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 8888888888888877763
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-07 Score=90.71 Aligned_cols=94 Identities=28% Similarity=0.314 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLA 108 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 108 (922)
....++.+|..+...|++++|+..|+++++..|+. ..++..+|.++...|++++|+..+++++...|++...+..+|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34455566666666666666666666665544432 345555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHH
Q 002431 109 SAYMRKGRLNEAAQCCR 125 (922)
Q Consensus 109 ~~~~~~g~~~~A~~~~~ 125 (922)
.++...|+...+...++
T Consensus 114 ~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHcCChHhHhhCHH
Confidence 55555555544443333
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-08 Score=84.09 Aligned_cols=81 Identities=23% Similarity=0.348 Sum_probs=59.1
Q ss_pred cCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 12 SGSYKQALEHSNSVYERNPL--RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRY 89 (922)
Q Consensus 12 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 89 (922)
+|+|++|+..++++++..|. +...++.+|.|+++.|++++|+..+++ .+.++.+....+.+|.++.++|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57788888888888877774 455666678888888888888888877 666677777777777888888888888777
Q ss_pred HHHH
Q 002431 90 YLVA 93 (922)
Q Consensus 90 ~~~a 93 (922)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.7e-05 Score=82.68 Aligned_cols=408 Identities=15% Similarity=0.158 Sum_probs=219.4
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------------------cCCCcHH
Q 002431 9 MYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR--------------------LEPRFAE 68 (922)
Q Consensus 9 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------~~p~~~~ 68 (922)
....|+|+.|...++.. ...|+....|..++......|+.--|..+|...-. ..-+-..
T Consensus 454 aid~~df~ra~afles~-~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~ 532 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLESL-EMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTD 532 (1636)
T ss_pred ccccCchHHHHHHHHhh-ccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCch
Confidence 35678999999887764 56777777788888877777776666555543211 1112234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002431 69 CYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148 (922)
Q Consensus 69 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 148 (922)
.|...+.......+|.+|...|-.- +..+ ...-+|....++++|+.+.+.. -.|.........-..+...
T Consensus 533 fykvra~lail~kkfk~ae~ifleq-----n~te---~aigmy~~lhkwde~i~lae~~--~~p~~eklk~sy~q~l~dt 602 (1636)
T KOG3616|consen 533 FYKVRAMLAILEKKFKEAEMIFLEQ-----NATE---EAIGMYQELHKWDEAIALAEAK--GHPALEKLKRSYLQALMDT 602 (1636)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhc-----ccHH---HHHHHHHHHHhHHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 4555555555556666666655321 1111 1122344555566665543321 1233223333333444445
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHc
Q 002431 149 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT------------FPDAYLNLGNVYKAL 216 (922)
Q Consensus 149 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~l~~~~~~~ 216 (922)
|+-++|-++- ....+. ..-..+|.+.|...+|......--.+..+ ..+.|-.-|.++.+.
T Consensus 603 ~qd~ka~elk-----~sdgd~---laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki 674 (1636)
T KOG3616|consen 603 GQDEKAAELK-----ESDGDG---LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKI 674 (1636)
T ss_pred Cchhhhhhhc-----cccCcc---HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHh
Confidence 5544443211 111111 12234455555555544332111111000 022444555666666
Q ss_pred CChHHHHHHHHHH------Hhh----CCC--hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 217 GMPQEAIMCYQRA------VQT----RPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284 (922)
Q Consensus 217 g~~~~A~~~~~~~------~~~----~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 284 (922)
.++++|+++|++- +++ .|. ...-..-|.-+...|+++.|+..|-++- .......+....+
T Consensus 675 ~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~--------~~~kaieaai~ak 746 (1636)
T KOG3616|consen 675 HDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------CLIKAIEAAIGAK 746 (1636)
T ss_pred hCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------hHHHHHHHHhhhh
Confidence 6667777666532 221 232 2222334555667777777777776542 2223334455566
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Q 002431 285 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 364 (922)
Q Consensus 285 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 364 (922)
+|.+|+.+++...... .....|-.++.-|...|+++.|.++|.++- .+..-...|.+.|++++|.++-++.
T Consensus 747 ew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 747 EWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred hhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHh
Confidence 7777777776654332 223455667778888888888888887642 2334566777888888887777665
Q ss_pred HccCCCC-HHHHHHHHHHHHHhCCHHHHHHH-------------HHHH------Hh----hCCCc-HHHHHHHHHHHHhc
Q 002431 365 LRIDPLA-ADGLVNRGNTYKEIGRVTDAIQD-------------YIRA------IT----IRPTM-AEAHANLASAYKDS 419 (922)
Q Consensus 365 l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~-------------~~~a------l~----~~p~~-~~~~~~la~~~~~~ 419 (922)
.. |.. ...|...+.-+-+.|++.+|.+. |.+. +. ..|+. .+....++.-|...
T Consensus 818 ~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~ 895 (1636)
T KOG3616|consen 818 HG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAE 895 (1636)
T ss_pred cC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhc
Confidence 42 322 23444455555555555555443 3321 11 12322 45778899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHH
Q 002431 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRM 462 (922)
Q Consensus 420 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 462 (922)
|+...|.+.|-++-+ +....++|...+-|+++.++
T Consensus 896 g~lkaae~~flea~d--------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 896 GDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred cChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHH
Confidence 999999999877643 22334455555667776544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.4e-06 Score=83.56 Aligned_cols=222 Identities=28% Similarity=0.405 Sum_probs=149.1
Q ss_pred CChHHHHHHHHHHHhhCCC---hhHHHhHHHHHHHcCChHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 217 GMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAIG--CDPRFLEAYNNLGNALKDVGRVDEAIQ 291 (922)
Q Consensus 217 g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~ 291 (922)
+....+...+.......+. .......+..+...+++..+...+..... ..+.....+...+..+...+++.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444445544444443 35555556666666666666666666654 455555566666666666666666666
Q ss_pred HHHHHHhhCCCChHHHHhHHH-HHHHcCChhHHHHHHHHHHhcCC---CCchhhhhHHHHHHHcCCHHHHHHHHHHHHcc
Q 002431 292 CYNQCLSLQPSHPQALTNLGN-IYMEWNMLPAAASYYKATLAVTT---GLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367 (922)
Q Consensus 292 ~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 367 (922)
.+.++....+.+......... ++...|+++.|...+++++...+ .....+...+..+...+++++|+..+.+++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 666666665555444444444 66677777777777777666444 23444555555566777888888888888888
Q ss_pred CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 368 DPL-AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 368 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
.+. ....+..++..+...+++++|...+..++...|.....+..++..+...+..+++...+.+.++..|.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 777 57788888888888888888888888888888776667777777777667788888888888888776
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.6e-08 Score=99.02 Aligned_cols=98 Identities=27% Similarity=0.366 Sum_probs=72.3
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 419 (922)
++.+++.++.+++++.+|+...++++.++|+|..+++..|.++..+|+++.|+..|++++++.|+|..+...|..+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 46677777777777777777777777777777777777777777777777777777777777777777777777777666
Q ss_pred CCHHHH-HHHHHHHHhcCC
Q 002431 420 GHVEAA-IKSYKQALLLRP 437 (922)
Q Consensus 420 g~~~~A-~~~~~~al~~~p 437 (922)
.++.+. .+.|.+++..-+
T Consensus 339 ~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 554443 667777666543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-05 Score=80.21 Aligned_cols=223 Identities=33% Similarity=0.388 Sum_probs=144.5
Q ss_pred cCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 46 LHDYDMCIARNEEALRLEPR--FAECYGNMANAWKEKGDIDLAIRYYLVAIE--LRPNFADAWSNLASAYMRKGRLNEAA 121 (922)
Q Consensus 46 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 121 (922)
.+.+..+...+.......+. ........+..+...+++..+...+..... ..+.....+...+..+...+++.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666677777777666665 366677777777777777777777777776 56666677777777777777777777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 122 QCCRQALALNPLLVDAHSNLGN-LMKAQGLVQEAYSCYLEALRIQP---TFAIAWSNLAGLFMESGDLNRALQYYKEAVK 197 (922)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (922)
..+.++....+.........+. ++...|+++.|...+.+++...| .........+..+...++++.++..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7777777766655444444444 67777777777777777766554 2344444555555666677777777777776
Q ss_pred cCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002431 198 LKPT-FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPR 268 (922)
Q Consensus 198 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 268 (922)
..+. ....+..++..+...+++++|...+..++...|. ...+..++..+...+..+++...+.+.+...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 6666 4666666666666666666666666666666555 344444444444445556666666665555554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-07 Score=90.16 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=85.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCC
Q 002431 8 QMYKSGSYKQALEHSNSVYERNPLR--TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR---FAECYGNMANAWKEKGD 82 (922)
Q Consensus 8 ~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~ 82 (922)
-++-.+.|..+...+.++++.++.+ ...++.+|.++...|++++|+..|++++...|+ .+.++..+|.++...|+
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~ 87 (168)
T CHL00033 8 DNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE 87 (168)
T ss_pred ccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC
Confidence 3455566777888887776655544 667788888888899999999999999877665 34578888999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 115 (922)
+++|+..+++++..+|.....+..++.++...|
T Consensus 88 ~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 88 HTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 999999999998888888888888888887443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2e-07 Score=89.36 Aligned_cols=118 Identities=25% Similarity=0.292 Sum_probs=96.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002431 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNL 141 (922)
Q Consensus 65 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 141 (922)
..+..++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..++++++..|.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 456778899999999999999999999999876653 46888999999999999999999999999999888888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002431 142 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202 (922)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 202 (922)
|.++...|+...+...+++++. .+++|.+.+++++..+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 9999888887777665555442 2567777888887777765
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.9e-07 Score=83.08 Aligned_cols=101 Identities=20% Similarity=0.209 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002431 69 CYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148 (922)
Q Consensus 69 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 148 (922)
.++..|..|-..|-..-|...|.+++.+.|+.+.+++.+|..+...|+++.|.+.|+..++++|...-+..+.|..+.--
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~ 146 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 146 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeec
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhhCCCcH
Q 002431 149 GLVQEAYSCYLEALRIQPTFA 169 (922)
Q Consensus 149 g~~~~A~~~~~~al~~~p~~~ 169 (922)
|++.-|.+.+.+..+.+|+++
T Consensus 147 gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 147 GRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred CchHhhHHHHHHHHhcCCCCh
Confidence 555555555555555555544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.77 E-value=7e-08 Score=82.43 Aligned_cols=95 Identities=34% Similarity=0.523 Sum_probs=46.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
+.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|++.++++++..|.+...+..++.++...|+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 34444555555555555555555544444444444455555555555555555555554444444444444444444444
Q ss_pred HHHHHHHHHHHHhcC
Q 002431 83 IDLAIRYYLVAIELR 97 (922)
Q Consensus 83 ~~~A~~~~~~al~~~ 97 (922)
+++|...+.++++..
T Consensus 84 ~~~a~~~~~~~~~~~ 98 (100)
T cd00189 84 YEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHHccC
Confidence 444444444444433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-06 Score=90.94 Aligned_cols=177 Identities=25% Similarity=0.369 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C----cHHHHHHHHHHHHHcCCHHHHH
Q 002431 48 DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP--N----FADAWSNLASAYMRKGRLNEAA 121 (922)
Q Consensus 48 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~A~ 121 (922)
++++|...|+++ |.+|...|++++|.+.|.++.+..- + -...+...+.++.+. ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 566666666554 4555666666666666666543210 0 112233333443333 566666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCC
Q 002431 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES-GDLNRALQYYKEAVKLKP 200 (922)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p 200 (922)
..+++++. +|...|++..|-.. +..+|.+|... |++++|++.|+++.+...
T Consensus 95 ~~~~~A~~--------------~y~~~G~~~~aA~~--------------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 95 ECYEKAIE--------------IYREAGRFSQAAKC--------------LKELAEIYEEQLGDYEKAIEYYQKAAELYE 146 (282)
T ss_dssp HHHHHHHH--------------HHHHCT-HHHHHHH--------------HHHHHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------------HHHhcCcHHHHHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 66655542 23333333333222 23344444444 555555555555544311
Q ss_pred C--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--------hhHHHhHHHHHHHcCChHHHHHHHHHHHhcC
Q 002431 201 T--F----PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--------AIAFGNLASTYYERGQADMAILYYKQAIGCD 266 (922)
Q Consensus 201 ~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 266 (922)
. . ...+..++.++...|++++|++.|++.....-+ ...+...+.++...|+...|...+++....+
T Consensus 147 ~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 147 QEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 1 1 123445555555555555555555555443211 1123334444445555555555555555444
Q ss_pred C
Q 002431 267 P 267 (922)
Q Consensus 267 p 267 (922)
|
T Consensus 227 ~ 227 (282)
T PF14938_consen 227 P 227 (282)
T ss_dssp T
T ss_pred C
Confidence 4
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.8e-07 Score=84.59 Aligned_cols=122 Identities=23% Similarity=0.183 Sum_probs=71.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWK 78 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 78 (922)
.+...+..++...+...++++.+.+|++ ..+.+.+|.+++..|++++|+..|++++...|+. ..+.+.++.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 17 QALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 3444445666666666666666666655 4455556666666666666666666666655433 345556666666
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 79 EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127 (922)
Q Consensus 79 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 127 (922)
..|++++|+..++.. ...+-.+.++..+|.++...|++++|+..|+++
T Consensus 97 ~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 97 QQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666666666442 222334455566666666666666666666654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4e-07 Score=84.18 Aligned_cols=195 Identities=19% Similarity=0.191 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 002431 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180 (922)
Q Consensus 101 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 180 (922)
+..++..|..|-..|-+.-|.--|.+++.+.|+.+++++.+|..+...|+++.|.+.|+..++++|.+..+..+.|..++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 44566668888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-HHhhCCChhHHHhHHHHHHHcCChHHHHHHH
Q 002431 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR-AVQTRPNAIAFGNLASTYYERGQADMAILYY 259 (922)
Q Consensus 181 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 259 (922)
--|++.-|.+-+.+..+.+|++|.--..+- +-...-++.+|..-+.+ +...+.+..-|. +...|...=..+ ..+
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY-l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~-iV~~yLgkiS~e---~l~ 219 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLY-LNEQKLDPKQAKTNLKQRAEKSDKEQWGWN-IVEFYLGKISEE---TLM 219 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHH-HHHhhCCHHHHHHHHHHHHHhccHhhhhHH-HHHHHHhhccHH---HHH
Confidence 999999999999999998998875322221 11233456666655544 333332222222 222222111111 122
Q ss_pred HHHHhcCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002431 260 KQAIGCDPRF-------LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300 (922)
Q Consensus 260 ~~~l~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 300 (922)
+++.....++ .++++.+|..+...|+.++|...|+-++..+
T Consensus 220 ~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 220 ERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2322222121 3577888888888888888888888877654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.8e-08 Score=78.02 Aligned_cols=66 Identities=36% Similarity=0.568 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG-DIDLAIRYYLVAIELRP 98 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 98 (922)
+..+..+|.+++..|++++|+..|+++++.+|+++.+++.+|.++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4455555555555555555555555555555555555555555555555 45555555555555544
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-07 Score=89.10 Aligned_cols=101 Identities=27% Similarity=0.377 Sum_probs=59.0
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY 416 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 416 (922)
.++.+|.++..+|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++++.|.....+..++.++
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34555555555555555555555555554332 235555666666666666666666666666555555555555555
Q ss_pred H-------hcCCHH-------HHHHHHHHHHhcCCCCH
Q 002431 417 K-------DSGHVE-------AAIKSYKQALLLRPDFP 440 (922)
Q Consensus 417 ~-------~~g~~~-------~A~~~~~~al~~~p~~~ 440 (922)
. ..|+++ +|..+|++++..+|++.
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 5 555544 66667777777887654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.4e-08 Score=77.15 Aligned_cols=63 Identities=35% Similarity=0.593 Sum_probs=41.3
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF 66 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 66 (922)
.+|..+++.|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666666666666666666666666666666666654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.8e-07 Score=93.78 Aligned_cols=119 Identities=11% Similarity=0.035 Sum_probs=60.4
Q ss_pred HHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 50 DMCIARNEEAL---RLEPRFAECYGNMANAWKEK---------GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRL 117 (922)
Q Consensus 50 ~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 117 (922)
+.|+.+|.+++ ..+|..+.+|..++.++... .+..+|.+..+++++++|.++.++..+|.++...+++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~ 354 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA 354 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch
Confidence 34555555555 55555555555555554432 1233444445555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 002431 118 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF 168 (922)
Q Consensus 118 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 168 (922)
+.|...|++++.++|+.+.+++..|.+..-.|+.++|.+.++++++++|.-
T Consensus 355 ~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 355 KVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred hhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 555555555555555555555555555555555555555555555555443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.9e-07 Score=95.77 Aligned_cols=125 Identities=21% Similarity=0.265 Sum_probs=64.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC----Cc-----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNP----LR-----------TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC 69 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p----~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 69 (922)
.|..+++.|+|..|...|+++++.-. .+ ..+++.++.|+.++++|.+|+...++++..+|+|..+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 45667777777777777777654211 00 2234445555555555555555555555555555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 002431 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA-AQCCRQALA 129 (922)
Q Consensus 70 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~~l~ 129 (922)
++..|.++...|+|+.|+..|+++++..|+|..+...+..+..+..++.+. .+.|.+++.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555555555555555555555555555555444444444443333222 344444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.2e-07 Score=93.54 Aligned_cols=128 Identities=21% Similarity=0.255 Sum_probs=66.2
Q ss_pred HhHHHHHHHc-CChhHHHHHHHHHHhcCCCC------chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCC----C--H-H
Q 002431 308 TNLGNIYMEW-NMLPAAASYYKATLAVTTGL------SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL----A--A-D 373 (922)
Q Consensus 308 ~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~--~-~ 373 (922)
..+|.+|... |++++|+++|+++....... ...+..++.++.+.|+|++|++.|++.....-+ . . .
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 3345555555 55555555555555442111 123445666666777777777777666553211 1 1 2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHh--cCCHHHHHHHHHHHHhc
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM-----AEAHANLASAYKD--SGHVEAAIKSYKQALLL 435 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~--~g~~~~A~~~~~~al~~ 435 (922)
.++..+.|+...|+...|.+.+++....+|.. ......|..++.. ...+++|+.-|.++-++
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 34555666667777777777777776666532 2344445555544 23566666666555444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.1e-08 Score=76.16 Aligned_cols=64 Identities=27% Similarity=0.376 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 002431 377 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 377 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 440 (922)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3556666666666666666666666666666666666666666666666666666666666653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.5e-08 Score=81.64 Aligned_cols=81 Identities=32% Similarity=0.513 Sum_probs=58.3
Q ss_pred cCCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 002431 351 QGNYADAISCYNEVLRIDPL--AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS 428 (922)
Q Consensus 351 ~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 428 (922)
+|++++|+.+++++++..|. +...++.+|.++++.|++++|+..+++ .+.++.+....+.+|.++.++|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 56777777777777777774 345566677777777777777777777 666677777777777788888888888777
Q ss_pred HHHH
Q 002431 429 YKQA 432 (922)
Q Consensus 429 ~~~a 432 (922)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7764
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.3e-07 Score=99.72 Aligned_cols=121 Identities=20% Similarity=0.196 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Q 002431 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRK--------GRLNEAAQCCRQALAL--NPLLVDAHSNLGNLMKAQGLVQ 152 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~ 152 (922)
..+|+.+|+++++.+|+++.++..++.++... .+..++.+..++++.. ++.++.++..+|..+...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 44555555555555555555555444444322 1223444444444442 4455556666666666666666
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 204 (922)
Q Consensus 153 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 204 (922)
+|...+++++.++| +..+|..+|.++...|++++|++.+++++.++|.++.
T Consensus 438 ~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 438 EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 66666666666666 3556666666666666666666666666666666553
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.6e-07 Score=101.27 Aligned_cols=121 Identities=16% Similarity=0.106 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHhcCCCCchhhhhHHHHHHHc--------CCHHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHHhCCHH
Q 002431 320 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ--------GNYADAISCYNEVLRI--DPLAADGLVNRGNTYKEIGRVT 389 (922)
Q Consensus 320 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 389 (922)
..+|+.+|+++++.+|++..++-.++.++... .+..++.+..++++.+ +|.++.++..+|..+...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 44555555555555555555555444444322 2345666666676664 6777888999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 390 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (922)
Q Consensus 390 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (922)
+|...++++++++|+ ..+|..+|.++...|+.++|.+.|++++.++|.++.
T Consensus 438 ~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 438 EAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 999999999999995 789999999999999999999999999999999884
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.1e-07 Score=93.65 Aligned_cols=149 Identities=14% Similarity=0.099 Sum_probs=128.9
Q ss_pred CHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 14 SYKQALEHSNSVY---ERNPLRTDNLLLLGAIYYQL---------HDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 14 ~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
..+.|+.+|.+++ ..+|....++-.++.|++.. .+..+|....+++++.+|.|+.++..+|.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 3568899999999 88899999999999998765 24568899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL-MKAQGLVQEAYSCYLE 160 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 160 (922)
+++.|...|++++.++|+.+.+|+..|......|+.++|.+.++++++++|....+-...-.+ .+-....++|+.+|-+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 999999999999999999999999999999999999999999999999999876654444344 4445567778777755
Q ss_pred HH
Q 002431 161 AL 162 (922)
Q Consensus 161 al 162 (922)
-.
T Consensus 433 ~~ 434 (458)
T PRK11906 433 ET 434 (458)
T ss_pred cc
Confidence 43
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.9e-07 Score=92.31 Aligned_cols=107 Identities=17% Similarity=0.104 Sum_probs=80.1
Q ss_pred chHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHH
Q 002431 32 RTDNLLLLGAIY-YQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN---FADAW 104 (922)
Q Consensus 32 ~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~ 104 (922)
+....+..+..+ +..|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345556666655 55678888888888888887776 467888888888888888888888888877665 46677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002431 105 SNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138 (922)
Q Consensus 105 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 138 (922)
+.+|.++...|++++|...|+++++..|+...+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 7778888888888888888888888887766543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.6e-07 Score=83.42 Aligned_cols=105 Identities=11% Similarity=0.001 Sum_probs=90.7
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 002431 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414 (922)
Q Consensus 335 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 414 (922)
++.-...+..|.-++.+|++++|..+|+-....+|.+++.+..+|.++..+|++++|+..|..+..++++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 33445567778888899999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCH
Q 002431 415 AYKDSGHVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 415 ~~~~~g~~~~A~~~~~~al~~~p~~~ 440 (922)
||..+|+.++|+..|+.+++ .|.+.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 99999999999999999888 34443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.3e-07 Score=91.99 Aligned_cols=104 Identities=19% Similarity=0.230 Sum_probs=88.6
Q ss_pred hhhhhHHHHH-HHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC---cHHHHHH
Q 002431 339 APFNNLAVIY-KQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT---MAEAHAN 411 (922)
Q Consensus 339 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 411 (922)
..++..+..+ .+.|++++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4455555554 56789999999999999999887 579999999999999999999999999988776 4778899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 412 LASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 412 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
+|.++...|++++|+..|+++++..|++..+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999987654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.1e-07 Score=95.57 Aligned_cols=117 Identities=17% Similarity=0.134 Sum_probs=74.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 42 IYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121 (922)
Q Consensus 42 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 121 (922)
.+...++++.|++.+++..+.+|+ ....++.++...++-.+|++.+.++++..|.+...+...+..+.+.++++.|+
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 334445666666666666655543 44456666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (922)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (922)
++.+++.+..|++...|..|+.+|...|++++|+..++.+
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 6666666666666666666666666666666666555433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.0015 Score=71.13 Aligned_cols=397 Identities=11% Similarity=0.047 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 002431 50 DMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM-RKGRLNEAAQCCRQAL 128 (922)
Q Consensus 50 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l 128 (922)
+.+...|...+...|..-..|...|..-.+.|..+.+.++|++.+..-|-....|..+..... ..|+.+.-...|+++.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 555556666666677777777777777777777777777777777777766666655444333 3456666666677666
Q ss_pred HhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhc-
Q 002431 129 ALNPL---LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES------GDLNRALQYYKEAVKL- 198 (922)
Q Consensus 129 ~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~~l~~- 198 (922)
..... ....|-.+......++++..-...|++.++.--.....++..=.-+.+. ...+++.+.-......
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~ 221 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS 221 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence 55432 2234445555556666677777777776654222211111111111111 1111111111111100
Q ss_pred -CCCC---HHHH-HHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHh--------c
Q 002431 199 -KPTF---PDAY-LNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIG--------C 265 (922)
Q Consensus 199 -~p~~---~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--------~ 265 (922)
.+.. .+.+ ...-.+-...+..+++...+.+... ..-.++.......+.+..++..++ .
T Consensus 222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~---------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl 292 (577)
T KOG1258|consen 222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS---------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPL 292 (577)
T ss_pred hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH---------HHHHHHHhhHhHHHHHHhhhhhccccccccCcc
Confidence 0000 0000 0000000000111111111111111 111222233334444444554442 2
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcC-CCCchhhhhH
Q 002431 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGLSAPFNNL 344 (922)
Q Consensus 266 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 344 (922)
++.....|......-...|+++...-.|++++--.....+.|...+......|+.+-|...+..+.+.. +..+.+...-
T Consensus 293 ~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~ 372 (577)
T KOG1258|consen 293 DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE 372 (577)
T ss_pred cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence 333456777778888889999999999999988888888999999999999999999998888887765 5566666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHH---HHHHHHhhCCC---cHHHHHHHHHHHHh
Q 002431 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ---DYIRAITIRPT---MAEAHANLASAYKD 418 (922)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~---~~~~al~~~p~---~~~~~~~la~~~~~ 418 (922)
+..-...|++..|...+++..+..|....+-........+.|+.+.+.. .+.....-..+ ....+...++...+
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 7777788899999999999988888888888888888888999888874 33333222111 13344555554444
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCC
Q 002431 419 -SGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCS 455 (922)
Q Consensus 419 -~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 455 (922)
.++.+.|...+.++.+..|++...+..++......+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 6789999999999999999999888888877766553
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.5e-07 Score=87.74 Aligned_cols=99 Identities=19% Similarity=0.250 Sum_probs=48.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANA 76 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 76 (922)
|..|..+++.|+|.+|...|...++..|++ +.++++||.+++.+|+|++|...|..+.+..|+. +++++.+|.+
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 344444555555555555555555544433 3445555555555555555555555554444432 3444444444
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcH
Q 002431 77 WKEKGDIDLAIRYYLVAIELRPNFA 101 (922)
Q Consensus 77 ~~~~g~~~~A~~~~~~al~~~p~~~ 101 (922)
...+|+.++|...|+++++..|+..
T Consensus 225 ~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 4444444444444444444444433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-06 Score=79.25 Aligned_cols=104 Identities=14% Similarity=0.138 Sum_probs=85.7
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhh
Q 002431 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFN 342 (922)
Q Consensus 263 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 342 (922)
.++.++..+..+..|.-+...|++++|...|+-....+|.+++.+..||.++...+++++|+..|..+..+.++++...+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 34555566677788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHc
Q 002431 343 NLAVIYKQQGNYADAISCYNEVLR 366 (922)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~ 366 (922)
..|.++...|+.++|+.+|+.+++
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh
Confidence 888888888888888888888877
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.0011 Score=68.85 Aligned_cols=87 Identities=11% Similarity=0.032 Sum_probs=61.2
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002431 21 HSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF 100 (922)
Q Consensus 21 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 100 (922)
-+++-++.+|++...|+.+.+-+..++.+++-.+.++++..-.|-.+.+|......-...+++.....+|.+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 3455566778888888888888888888888888888887777777777776666666667777777777777765433
Q ss_pred HHHHHHHH
Q 002431 101 ADAWSNLA 108 (922)
Q Consensus 101 ~~~~~~la 108 (922)
.+.|....
T Consensus 109 ldLW~lYl 116 (660)
T COG5107 109 LDLWMLYL 116 (660)
T ss_pred HhHHHHHH
Confidence 44444433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.5e-08 Score=95.77 Aligned_cols=226 Identities=15% Similarity=0.105 Sum_probs=161.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 115 (922)
+-..|.-|+++|+|++|+.+|.+.+..+|.++..+.+.+.+|++...+..|......++.++.....+|...+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56678899999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---------HHHHHHHHHHcCCHH
Q 002431 116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA---------WSNLAGLFMESGDLN 186 (922)
Q Consensus 116 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------~~~la~~~~~~g~~~ 186 (922)
+..+|.+-++.++++.|++.+....++.+.. ..++.- +.+..|....+ ...-|..+...|.++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I----~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~ 251 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRERKI----ATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS 251 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhH----HhhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence 9999999999999999987776555544432 222211 11111221111 112345567778888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhc
Q 002431 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGC 265 (922)
Q Consensus 187 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 265 (922)
.++..+-.-+.....+...-.+ +..+.+..+++.++.-..+.....|. ......-+.+-.-.|...++...++.++..
T Consensus 252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~ 330 (536)
T KOG4648|consen 252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKV 330 (536)
T ss_pred cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeee
Confidence 8887777665544443333333 56677777888888887777766654 333333444444456677888888888888
Q ss_pred CCCcH
Q 002431 266 DPRFL 270 (922)
Q Consensus 266 ~p~~~ 270 (922)
.|.+.
T Consensus 331 ~P~~~ 335 (536)
T KOG4648|consen 331 APAVE 335 (536)
T ss_pred ccccc
Confidence 77754
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.7e-08 Score=95.17 Aligned_cols=226 Identities=18% Similarity=0.172 Sum_probs=144.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCC-ChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 207 LNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR 285 (922)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 285 (922)
-..|+-|+++|+|++|+.+|.+.+...| +...+.+.+.+|++.+.+..|..-+..++.++.....+|...+.+-..+|+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 3456666667777777777777766666 366666667777777777777777777776666667777777777777777
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchh---------hhhHHHHHHHcCCHHH
Q 002431 286 VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP---------FNNLAVIYKQQGNYAD 356 (922)
Q Consensus 286 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~la~~~~~~g~~~~ 356 (922)
..+|.+.++.++++.|++.+..-.++.+-. ..++.- +.+..|....+ ...-|..+...|.++.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I----~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~ 252 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSLARINS----LRERKI----ATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSV 252 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhH----HhhcCCCCCccccchhhhccccCcchhhhhhhcccc
Confidence 777777777777777776554443333221 111110 11111111111 1233566677788888
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002431 357 AISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436 (922)
Q Consensus 357 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 436 (922)
++.++..-+.....+...-.+ +..+.+.-++++|+....+++..+|........-+.+---.|...++...++.++.+.
T Consensus 253 ~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~ 331 (536)
T KOG4648|consen 253 PVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVA 331 (536)
T ss_pred ceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeec
Confidence 888777666554444433333 6777888889999988888888887765555555555555677788888888888888
Q ss_pred CCCHH
Q 002431 437 PDFPE 441 (922)
Q Consensus 437 p~~~~ 441 (922)
|.+..
T Consensus 332 P~~~~ 336 (536)
T KOG4648|consen 332 PAVET 336 (536)
T ss_pred ccccc
Confidence 87643
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-06 Score=91.46 Aligned_cols=122 Identities=20% Similarity=0.177 Sum_probs=93.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002431 73 MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ 152 (922)
Q Consensus 73 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 152 (922)
+...+...++++.|++.+++..+.+|+ +...++.++...++..+|++.+.++++.+|.+...+...+..+...++++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 344455567788888888887777765 45567777777778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK 197 (922)
Q Consensus 153 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (922)
.|+...+++.+..|++...|..|+.+|...|++++|+..++.+-.
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888888888888888888888888888888888888877765543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.0019 Score=67.31 Aligned_cols=424 Identities=14% Similarity=0.042 Sum_probs=236.4
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCch-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRT-----DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAW 77 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 77 (922)
...|..+-+++++.+|.+.|.++.+....++ +.+..+..-.+-+++.+.-...+...-+..|..+......|...
T Consensus 10 c~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 10 CFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVA 89 (549)
T ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 4567888899999999999999987654442 33333444445667778777777777778888888888899999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C----CCHHH
Q 002431 78 KEKGDIDLAIRYYLVAIELRPN---------------FADAWSNLASAYMRKGRLNEAAQCCRQALALN-P----LLVDA 137 (922)
Q Consensus 78 ~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p----~~~~~ 137 (922)
++.+++.+|++.+..-.+.-.. +...-...+.++...|++.++...+++++..- + -+.+.
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 9999999999988766554111 01122346788899999999999999987653 2 24444
Q ss_pred HHH----HHHHHHH----cCCHHHHHHHHHHHH-------hh--------CCCcHHHHHHHHHHHH----HcCCHHHHHH
Q 002431 138 HSN----LGNLMKA----QGLVQEAYSCYLEAL-------RI--------QPTFAIAWSNLAGLFM----ESGDLNRALQ 190 (922)
Q Consensus 138 ~~~----la~~~~~----~g~~~~A~~~~~~al-------~~--------~p~~~~~~~~la~~~~----~~g~~~~A~~ 190 (922)
|.. +|..|.- ....+-+..+|+.++ .. .|...-.-..+-.++. +.--+-++++
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 444 3333321 111111112221111 00 1111000000000000 0000111122
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CC-hhHHHhHHHHHHHcCChHHHHHHHHHHHh
Q 002431 191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR-----PN-AIAFGNLASTYYERGQADMAILYYKQAIG 264 (922)
Q Consensus 191 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 264 (922)
.+++- -.+|+..-+...+..-... +.+++....+.+.... .. ...+..+.....+.++..+|.+++.-...
T Consensus 250 ~We~~-yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 250 NWENF-YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHhh-ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 22110 1233332222222222222 4444444444333221 11 34455556666778888888888887777
Q ss_pred cCCCcHHHHH------HHHHHHH-HcCCHHH---HHHHHHHHHhhCCCCh---HHHHhHHHHHHHcCC-hhHHHHHHHHH
Q 002431 265 CDPRFLEAYN------NLGNALK-DVGRVDE---AIQCYNQCLSLQPSHP---QALTNLGNIYMEWNM-LPAAASYYKAT 330 (922)
Q Consensus 265 ~~p~~~~~~~------~l~~~~~-~~g~~~~---A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~-~~~A~~~~~~a 330 (922)
.+|+.....- .+-.+.+ ...++.+ =+..++.+-..+-+.. ..+..-+.-+++.|. -++|+.+++.+
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 8887652111 1111111 1111222 2223333322233322 234455666778877 88899999999
Q ss_pred HhcCCCCchhhhhHHHHHHHcCCHHHHHH--HHHHHHc---------cCC---CCHHHHHHH--HHHHHHhCCHHHHHHH
Q 002431 331 LAVTTGLSAPFNNLAVIYKQQGNYADAIS--CYNEVLR---------IDP---LAADGLVNR--GNTYKEIGRVTDAIQD 394 (922)
Q Consensus 331 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~---------~~p---~~~~~~~~l--~~~~~~~g~~~~A~~~ 394 (922)
++..+.+...-+..- ... ...|.+|+. .+.+.++ +.| .+.+.-+.+ |..++..|+|.++.-+
T Consensus 407 l~ft~yD~ec~n~v~-~fv-Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 407 LQFTNYDIECENIVF-LFV-KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHhccccHHHHHHHH-HHH-HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 988887765433221 111 112333322 1122221 122 223333333 5567788999999988
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002431 395 YIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432 (922)
Q Consensus 395 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 432 (922)
-.=..+..| ++.++..+|.+.....+|++|..++.+.
T Consensus 485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 888888999 7999999999999999999999998765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.5e-05 Score=75.92 Aligned_cols=183 Identities=19% Similarity=0.165 Sum_probs=92.4
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANA 76 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 76 (922)
+..|...++.|+|++|++.|+.+....|.+ ..+...++.++++.+++++|+..+++-++..|.+ ..+++..|.+
T Consensus 38 Y~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 38 YNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 344555555555555555555555544432 3444555555555555555555555555555443 2234444444
Q ss_pred HHHcC--------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002431 77 WKEKG--------DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148 (922)
Q Consensus 77 ~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 148 (922)
++..= -..+|+..|+..+...|++.-+-..... +..+... ...--...|..|.+.
T Consensus 118 ~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~------LA~~Em~IaryY~kr 180 (254)
T COG4105 118 YFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDA------LAGHEMAIARYYLKR 180 (254)
T ss_pred HhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHH------HHHHHHHHHHHHHHh
Confidence 33211 1223444444444444443211000000 0000000 011224567778888
Q ss_pred CCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002431 149 GLVQEAYSCYLEALRIQPTF---AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202 (922)
Q Consensus 149 g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 202 (922)
|.+-.|+.-++.+++..|+. ..++..+..+|...|-.++|...-.-+-...|++
T Consensus 181 ~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 181 GAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred cChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 88888888888888775544 3566677777888888887776655444444544
|
|
| >COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.9e-06 Score=94.25 Aligned_cols=171 Identities=18% Similarity=0.080 Sum_probs=121.0
Q ss_pred CcCCCCCCC--CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCCh-hhHHHHHHHHHHcCCCCCceEEcCC
Q 002431 703 KRSDYGLPE--DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPA-AGEMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 703 ~r~~~~l~~--~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~-~~~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
++..+||+. +.++|+.++|+ +|+.+.++++...+++.. .+++++|.|. .-++.+...+..+. +++.+.-.
T Consensus 282 L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~gd~~le~~~~~la~~~~---~~~~~~i~ 356 (487)
T COG0297 282 LQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTGDPELEEALRALASRHP---GRVLVVIG 356 (487)
T ss_pred HHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecCcHHHHHHHHHHHHhcC---ceEEEEee
Confidence 677889983 56899999987 599999999999999877 8899999772 22456777666653 35554443
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc-------------
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV------------- 843 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~------------- 843 (922)
.+..-....|..+|++|.||.|++ |.|-++||..|++.|. .++| ||.+ .|.
T Consensus 357 ~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv-------~~tG-------GLad-TV~~~~~~~~~~~gtG 421 (487)
T COG0297 357 YDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIV-------RETG-------GLAD-TVVDRNEWLIQGVGTG 421 (487)
T ss_pred ecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceE-------cccC-------Cccc-eecCccchhccCceeE
Confidence 333444556899999999999999 9999999999998774 4444 5555 222
Q ss_pred -----CCHHHHHH---HHHHHhcCHHH-HHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 844 -----NSMKEYEE---RAVSLALDRQK-LQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 844 -----~~~~~~~~---~~~~l~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
.+++++.. +|+.+..++.. .+.++ +..+ ...|+++..+.+..+.|+.+..
T Consensus 422 f~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~---~~~m--~~d~sw~~sa~~y~~lY~~~~~ 480 (487)
T COG0297 422 FLFLQTNPDHLANALRRALVLYRAPPLLWRKVQ---PNAM--GADFSWDLSAKEYVELYKPLLS 480 (487)
T ss_pred EEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHH---Hhhc--ccccCchhHHHHHHHHHHHHhc
Confidence 25555543 44455555444 22222 2223 2469999999999999998865
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=80.19 Aligned_cols=106 Identities=27% Similarity=0.331 Sum_probs=91.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHccCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 002431 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAA-----DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417 (922)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 417 (922)
.-|.-++..|+|++|..-|..++.+.|..+ ..|.+.|.++.+++.++.|+....++++++|.+..++.+.+.+|.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 346677888899999999999998887653 367788999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002431 418 DSGHVEAAIKSYKQALLLRPDFPEATCNLLH 448 (922)
Q Consensus 418 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 448 (922)
++.++++|++-|+++++.+|....+.-..+.
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 9999999999999999999998776655443
|
|
| >PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.3e-06 Score=99.15 Aligned_cols=179 Identities=12% Similarity=0.104 Sum_probs=128.0
Q ss_pred CcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCCeE--EEEe--c-----CChhhHHHHHHHHHH-------
Q 002431 703 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPNSA--LWLL--R-----FPAAGEMRLRAYAVA------- 764 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~--l~~~--~-----~~~~~~~~l~~~~~~------- 764 (922)
+|+.++ +..++.++.|+. |+++.-+.+|.++|+..|+.+ ++++ . +++. .+.++..+.+
T Consensus 356 lr~~~~---g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~e-Y~~l~~~V~~~V~rIN~ 431 (934)
T PLN03064 356 LKERFA---GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPE-YQKLTSQVHEIVGRING 431 (934)
T ss_pred HHHHhC---CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHH-HHHHHHHHHHHHHHHhh
Confidence 555554 456788888874 999999999999999999853 4444 2 3332 3444444432
Q ss_pred -cCC-CCCceEEcC-CCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHc-----CCCeeeecCCcchhhhHHH-HHHh
Q 002431 765 -QGV-QPDQIIFTD-VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWA-----GLPMITLPLEKMATRVAGS-LCLA 834 (922)
Q Consensus 765 -~g~-~~~rv~f~~-~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~-----g~Pvv~~~~~~~~~r~~~~-~~~~ 834 (922)
.|- +..=|++.. .++..++.++|+.+||||.|+..+| ++++.|+|+| |++|+. .-.|++ .|
T Consensus 432 ~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILS-------EfaGaa~~L-- 502 (934)
T PLN03064 432 RFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILS-------EFAGAAQSL-- 502 (934)
T ss_pred hccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEe-------CCCchHHHh--
Confidence 232 111155554 3788999999999999999999999 9999999999 666662 222222 22
Q ss_pred cCCCCcccc--CCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 002431 835 TGLGEEMIV--NSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899 (922)
Q Consensus 835 ~g~~~~~i~--~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 899 (922)
|-.. +++ .|.++.++++.+.++ +++.++...+.+++.+.. +|...+++.+.......|..
T Consensus 503 -~~~A-llVNP~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~---~d~~~Wa~~fl~~L~~~~~~ 565 (934)
T PLN03064 503 -GAGA-ILVNPWNITEVAASIAQALNMPEEEREKRHRHNFMHVTT---HTAQEWAETFVSELNDTVVE 565 (934)
T ss_pred -CCce-EEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccc---CCHHHHHHHHHHHHHHHHhh
Confidence 3223 332 589999999888777 888898888889888754 89999999988877777643
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.5e-06 Score=75.42 Aligned_cols=81 Identities=23% Similarity=0.397 Sum_probs=52.6
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMAN 75 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 75 (922)
++..|...++.|+|++|++.|+.+....|.. ..+.+.++.+|+..+++++|+..+++.++++|.+ ..+++..|.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 3556666777777777777777776666533 5566667777777777777777777777776654 345666666
Q ss_pred HHHHcCC
Q 002431 76 AWKEKGD 82 (922)
Q Consensus 76 ~~~~~g~ 82 (922)
+++.+..
T Consensus 93 ~~~~~~~ 99 (142)
T PF13512_consen 93 SYYEQDE 99 (142)
T ss_pred HHHHHhh
Confidence 6655544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.9e-07 Score=71.91 Aligned_cols=66 Identities=29% Similarity=0.409 Sum_probs=44.8
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMAN 75 (922)
Q Consensus 10 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 75 (922)
++.|++++|++.|++++..+|++..+++.++.++++.|++++|...+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 556777777777777777777777777777777777777777777777777777766655555543
|
... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.4e-05 Score=74.26 Aligned_cols=175 Identities=21% Similarity=0.219 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 002431 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN---FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVD---AHSN 140 (922)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~ 140 (922)
+..++.-|....+.|++++|+..|+.+....|. ...+...++.++++.+++++|+...++.+++.|.++. +++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 455666666666777777777777766666554 3446666677777777777777777777776665443 3444
Q ss_pred HHHHHHHc--------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002431 141 LGNLMKAQ--------GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 212 (922)
Q Consensus 141 la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 212 (922)
.|.++... .-..+|...|+..+...|++..+-..... +..+.. .-..--..+|+.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d------~LA~~Em~Iary 176 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLND------ALAGHEMAIARY 176 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHH------HHHHHHHHHHHH
Confidence 44443321 11234555555555555554322111100 000000 001122344555
Q ss_pred HHHcCChHHHHHHHHHHHhhCCC----hhHHHhHHHHHHHcCChHHHHHH
Q 002431 213 YKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILY 258 (922)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~ 258 (922)
|.+.|.+..|+.-++.+++..|+ .+++..+..+|...|-.++|...
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 56666666666666666555444 34445555555555555555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00011 Score=70.41 Aligned_cols=186 Identities=21% Similarity=0.328 Sum_probs=131.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 208 NLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 287 (922)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~ 287 (922)
..+.+....|+..+.+.-+..+... ...+..........+..++.+++-+. ...+.+..++.-.|.|.
T Consensus 127 lhAe~~~~lgnpqesLdRl~~L~~~------V~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~ 194 (366)
T KOG2796|consen 127 LHAELQQYLGNPQESLDRLHKLKTV------VSKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEYV 194 (366)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHH------HHHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhhh
Confidence 3455666677777776666555432 11122223333334556666666543 35677788888889999
Q ss_pred HHHHHHHHHHhhC-CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcC------CCCchhhhhHHHHHHHcCCHHHHHHH
Q 002431 288 EAIQCYNQCLSLQ-PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT------TGLSAPFNNLAVIYKQQGNYADAISC 360 (922)
Q Consensus 288 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~ 360 (922)
-....+.+.++.+ |.++.....+|.+.++.|+.+.|..+|+...+.. ..+..+..+.+.++.-.+++.+|...
T Consensus 195 iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~ 274 (366)
T KOG2796|consen 195 LSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRF 274 (366)
T ss_pred hhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHH
Confidence 9999999998887 6678888889999999999999988888554332 22334455667777777888888888
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc
Q 002431 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM 405 (922)
Q Consensus 361 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 405 (922)
+.+++..+|.++.+.++.+.|+.-.|+..+|++.++.+++..|..
T Consensus 275 ~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 275 FTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 888888888888888888888888888888888888888877763
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00088 Score=75.96 Aligned_cols=330 Identities=13% Similarity=0.099 Sum_probs=149.3
Q ss_pred HHHHHHHhhC---CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 20 EHSNSVYERN---PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR---FAECYGNMANAWKEKGDIDLAIRYYLVA 93 (922)
Q Consensus 20 ~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a 93 (922)
.+.++++... ..+++....-..+++..+-..+-++++++.+-.+.. +......+.....+ -+.....++.++.
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHh
Confidence 4555555432 244555555566677777777777777776533221 22222222222221 2223333333333
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCCCHHHHHHHHHHHHHcCCH
Q 002431 94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL----------------------NPLLVDAHSNLGNLMKAQGLV 151 (922)
Q Consensus 94 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----------------------~p~~~~~~~~la~~~~~~g~~ 151 (922)
-..+.. .+|.+....+-+++|...|++.-.. .-+.+..|..+|....+.|..
T Consensus 1047 dnyDa~------~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1047 DNYDAP------DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred ccCCch------hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCch
Confidence 222211 1233333444444444444432100 012344555555555555555
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002431 152 QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 231 (922)
Q Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 231 (922)
.+|++.|-++ +++..|........+.|.|++-+.++.-+.+.... +.+-..+..+|.+.++..+-.+.+
T Consensus 1121 ~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~elE~fi----- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTELEEFI----- 1189 (1666)
T ss_pred HHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHHHHHh-----
Confidence 5555555332 33444555555555555555555555444332211 223333444444444444333222
Q ss_pred hCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHH
Q 002431 232 TRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311 (922)
Q Consensus 232 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 311 (922)
..|+..-....|.-++..+.|+.|.-+|... .-|..++..+...|+|..|...-+++ ++..+|...+
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVC 1256 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHH
Confidence 2344334444555555555555555444332 23445555555556665555555443 2233444444
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 002431 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 384 (922)
Q Consensus 312 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 384 (922)
.++...+.+.-|.-+=-.. --.++-+-.+...|...|-+++-+.+++.++-+...+-..+..+|..|.+
T Consensus 1257 faCvd~~EFrlAQiCGL~i----ivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1257 FACVDKEEFRLAQICGLNI----IVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHhchhhhhHHHhcCceE----EEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 4433333332222110000 00112233455666666777777777766666655555555555555544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00044 Score=75.44 Aligned_cols=135 Identities=16% Similarity=0.118 Sum_probs=69.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHH
Q 002431 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187 (922)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 187 (922)
|.-+...|+++.|+..|-++-. ............++.+|+.+++....... ....|-.++.-|...|+++.
T Consensus 713 g~hl~~~~q~daainhfiea~~--------~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHH
Confidence 4445556666666665544421 11222333444556666665554433221 12334455666666677777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHH
Q 002431 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYY 259 (922)
Q Consensus 188 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 259 (922)
|.++|.++ .....-..+|.+.|++++|.++-++..........|...+.-+-+.|++.+|.++|
T Consensus 784 ae~lf~e~--------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 784 AEELFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHhc--------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 66666553 22233345666666776666666555432222445555555555566665555444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.9e-06 Score=83.25 Aligned_cols=104 Identities=19% Similarity=0.263 Sum_probs=92.0
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc---HHHHHHHHH
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM---AEAHANLAS 414 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 414 (922)
.+..+.-+++.|+|.+|...|...++..|++ +++++.||.+++.+|++++|...|..+.+..|++ +++++.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5677777888999999999999999988866 6799999999999999999999999999987654 788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 002431 415 AYKDSGHVEAAIKSYKQALLLRPDFPEATC 444 (922)
Q Consensus 415 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 444 (922)
+...+|+.++|...|+++++..|+.+.+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999999876653
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0013 Score=74.76 Aligned_cols=327 Identities=16% Similarity=0.149 Sum_probs=169.7
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002431 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP---NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNL 141 (922)
Q Consensus 65 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 141 (922)
.+++.-..-..++...+-..+-++++++.+-.+. ++......+.....+ -+.....++.++.-..+.. ..
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~------~i 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAP------DI 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCch------hH
Confidence 4566666777888888999999999999875332 233333444433333 3455666677666444322 23
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH
Q 002431 142 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQE 221 (922)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~ 221 (922)
+.+....+-+++|...|++.- -+..+..- +....++.+.|.++.+++ +.+.+|..++.+....|...+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~----~n~~A~~V---Lie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD----MNVSAIQV---LIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc----ccHHHHHH---HHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHH
Confidence 455566666777777765421 11111111 112234444554444443 334555555555555555555
Q ss_pred HHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002431 222 AIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301 (922)
Q Consensus 222 A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 301 (922)
|++.|-++ .++..|........+.|.|++-+.++.-+-+.... +..-..+..+|.+.++..+-.+.. ..|
T Consensus 1123 AieSyika----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~elE~fi-----~gp 1192 (1666)
T KOG0985|consen 1123 AIESYIKA----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTELEEFI-----AGP 1192 (1666)
T ss_pred HHHHHHhc----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHHHHHh-----cCC
Confidence 55555433 12344445555555555555555555444322111 112223333444444443332221 122
Q ss_pred CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHcc--------------
Q 002431 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI-------------- 367 (922)
Q Consensus 302 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------- 367 (922)
+.. -.-..|+-++..+.|+.|.-+|... .-|..++..+...|+|..|...-+++-..
T Consensus 1193 N~A-~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1193 NVA-NIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred Cch-hHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchh
Confidence 222 1223444444455555544444322 12444455555555555555444444221
Q ss_pred ----------C-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002431 368 ----------D-PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 430 (922)
Q Consensus 368 ----------~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 430 (922)
+ --+++-+-.+...|...|-+++-+..++.++-+...+...+..||..|.+-+ +++-.+.++
T Consensus 1264 EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~ 1336 (1666)
T KOG0985|consen 1264 EFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLK 1336 (1666)
T ss_pred hhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 0 0224455667778888899999999999998887777777888888887653 444444443
|
|
| >TIGR03492 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.5e-06 Score=90.56 Aligned_cols=173 Identities=16% Similarity=0.090 Sum_probs=109.0
Q ss_pred CCCCCcEEEEec--CCC---CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCC-------------
Q 002431 708 GLPEDKFIFACF--NQL---YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQP------------- 769 (922)
Q Consensus 708 ~l~~~~~~~~~~--~~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~------------- 769 (922)
+++++..+++.+ +|. .++.+.++++..++.++ |+..+++.-.+....+.+++...+.|+..
T Consensus 200 ~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~-~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 278 (396)
T TIGR03492 200 PLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDS-QPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQK 278 (396)
T ss_pred ccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhC-CCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhcc
Confidence 565554444433 232 25667889888888666 77777654323233567777777667632
Q ss_pred CceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhc----CCCCccccCC
Q 002431 770 DQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLAT----GLGEEMIVNS 845 (922)
Q Consensus 770 ~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~----g~~~~~i~~~ 845 (922)
+.+.+.+. ..+....|+.+|++|.. .|+++.|++.+|+|+|..+.+.. ...+.++... |-...++..+
T Consensus 279 ~~~~v~~~--~~~~~~~l~~ADlvI~r----SGt~T~E~a~lg~P~Ilip~~~~--q~na~~~~~~~~l~g~~~~l~~~~ 350 (396)
T TIGR03492 279 GTLEVLLG--RGAFAEILHWADLGIAM----AGTATEQAVGLGKPVIQLPGKGP--QFTYGFAEAQSRLLGGSVFLASKN 350 (396)
T ss_pred CceEEEec--hHhHHHHHHhCCEEEEC----cCHHHHHHHHhCCCEEEEeCCCC--HHHHHHHHhhHhhcCCEEecCCCC
Confidence 12455443 35667789999999965 44666999999999999985422 2233344432 4333122356
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHH
Q 002431 846 MKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLER 891 (922)
Q Consensus 846 ~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 891 (922)
.+..++.+.++..|++.+.++++..+.++ ......+++++.+.+
T Consensus 351 ~~~l~~~l~~ll~d~~~~~~~~~~~~~~l--g~~~a~~~ia~~i~~ 394 (396)
T TIGR03492 351 PEQAAQVVRQLLADPELLERCRRNGQERM--GPPGASARIAESILK 394 (396)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 78999999999999999988886555544 223455555555443
|
This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown. |
| >COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.3e-05 Score=80.94 Aligned_cols=162 Identities=15% Similarity=0.160 Sum_probs=109.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
..++|.+++...=. .++++...+.+...+...++-.|. . +. ...++ ++.++..++.|..+.+ ..+|
T Consensus 237 ~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~--~-~~------~~~~~-p~n~~v~~~~p~~~~l---~~ad 302 (406)
T COG1819 237 RPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG--A-RD------TLVNV-PDNVIVADYVPQLELL---PRAD 302 (406)
T ss_pred CCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc--c-cc------ccccC-CCceEEecCCCHHHHh---hhcC
Confidence 44677788754422 677776666666666433333332 1 11 12356 6899999998876655 6699
Q ss_pred EEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHHHH
Q 002431 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQALTN 868 (922)
Q Consensus 792 v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~~~~ 868 (922)
+|+ +.+|.+|+.|||..|||+|..+.. +-.-.-+..+..+|... .+- .+++...+.+.+++.|+..++..++
T Consensus 303 ~vI---~hGG~gtt~eaL~~gvP~vv~P~~-~DQ~~nA~rve~~G~G~-~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~ 377 (406)
T COG1819 303 AVI---HHGGAGTTSEALYAGVPLVVIPDG-ADQPLNAERVEELGAGI-ALPFEELTEERLRAAVNEVLADDSYRRAAER 377 (406)
T ss_pred EEE---ecCCcchHHHHHHcCCCEEEecCC-cchhHHHHHHHHcCCce-ecCcccCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 998 456689999999999999998876 22223445666778876 554 5788889999999999998887555
Q ss_pred HHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 869 KLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
..+... +.-..+..++.+|+..++
T Consensus 378 ~~~~~~---~~~g~~~~a~~le~~~~~ 401 (406)
T COG1819 378 LAEEFK---EEDGPAKAADLLEEFARE 401 (406)
T ss_pred HHHHhh---hcccHHHHHHHHHHHHhc
Confidence 554432 224466788888876643
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.3e-05 Score=69.99 Aligned_cols=124 Identities=21% Similarity=0.221 Sum_probs=74.6
Q ss_pred HHhHHHHHHHcCChhHHHHHHHHHHhc-CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCC--CCHHHHHHHHHHHH
Q 002431 307 LTNLGNIYMEWNMLPAAASYYKATLAV-TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP--LAADGLVNRGNTYK 383 (922)
Q Consensus 307 ~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~ 383 (922)
.+.++....+.|++.+|...|++++.- .-.++..+..++...+..+++.+|...+++..+.+| ..++....+|..+.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 344555555555555555555555432 344555555666666666666666666666666655 33556666667777
Q ss_pred HhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002431 384 EIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431 (922)
Q Consensus 384 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 431 (922)
..|++.+|...|+.++...|+ +.+....+..+.++|+..+|..-+..
T Consensus 172 a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 172 AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 777777777777777766665 45555566666667766665544433
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0093 Score=69.69 Aligned_cols=178 Identities=17% Similarity=0.080 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhhCC----CchHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHH
Q 002431 16 KQALEHSNSVYERNP----LRTDNLLLLGAIYY-QLHDYDMCIARNEEALRLEPRF------AECYGNMANAWKEKGDID 84 (922)
Q Consensus 16 ~~A~~~~~~~l~~~p----~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ 84 (922)
..|++.++-+++..+ ....+.+.+|.+++ ...+++.|..++++++....++ ..+.+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 345666666664222 22556677777776 6678888888888887665331 234556677777777666
Q ss_pred HHHHHHHHHHhcCCC---cHH-HHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCCHH
Q 002431 85 LAIRYYLVAIELRPN---FAD-AWSNL--ASAYMRKGRLNEAAQCCRQALALN--PLLVDA----HSNLGNLMKAQGLVQ 152 (922)
Q Consensus 85 ~A~~~~~~al~~~p~---~~~-~~~~l--a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~----~~~la~~~~~~g~~~ 152 (922)
|....++.++...+ ... ..+.+ +..+...+++..|.+.++...... ..++.+ ....+.+....+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888887765333 111 11111 222223368888888888776654 233332 223345555666677
Q ss_pred HHHHHHHHHHhhC----------CCcHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 002431 153 EAYSCYLEALRIQ----------PTFAIAWSNLAGL--FMESGDLNRALQYYKE 194 (922)
Q Consensus 153 ~A~~~~~~al~~~----------p~~~~~~~~la~~--~~~~g~~~~A~~~~~~ 194 (922)
++++..+++.... +....+|..+..+ +...|+++.+...+++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777776664321 1223344444433 3445665555544443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.42 E-value=7e-06 Score=71.68 Aligned_cols=94 Identities=24% Similarity=0.127 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHH
Q 002431 35 NLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN---FADAWSNLA 108 (922)
Q Consensus 35 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 108 (922)
+++.++.++-..|+.++|+..|++++...... ..++..+|..+...|++++|+..+++.+...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34444445555555555555555554433222 334444455555555555555555554444444 334444444
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 002431 109 SAYMRKGRLNEAAQCCRQAL 128 (922)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~l 128 (922)
.++...|+.++|++.+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 44445555555544444433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.6e-07 Score=69.68 Aligned_cols=63 Identities=22% Similarity=0.321 Sum_probs=30.4
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 002431 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412 (922)
Q Consensus 350 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 412 (922)
+.|++++|+..|+++++.+|++..+++.++.++.+.|++++|...+++++..+|+++.++..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555554444443333
|
... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.7e-06 Score=71.14 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=80.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHh
Q 002431 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM----AEAHANLASAYKD 418 (922)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 418 (922)
.-|..+.+.|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++..+. -.++...|.+|..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 346666777888888888888888888888888888888888888888888888888875432 3467778888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhh
Q 002431 419 SGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450 (922)
Q Consensus 419 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 450 (922)
.|+-+.|..-|+.+-+++..+..-..-.++-|
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPY 159 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSKFAREQLVELNPY 159 (175)
T ss_pred hCchHHHHHhHHHHHHhCCHHHHHHHHhcChH
Confidence 88888888888888888766554433333333
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.2e-05 Score=78.90 Aligned_cols=356 Identities=13% Similarity=0.062 Sum_probs=211.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH-HhcCCC--------cHHHHHHHHH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEA-LRLEPR--------FAECYGNMAN 75 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~ 75 (922)
..+.+++..+...+....+.+.....+++.+++..++.++..|++.+|.+.+... +...|. .-..|+++|-
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 4456677777777777777777777788899999999999999999999887654 222222 2335678999
Q ss_pred HHHHcCCHHHHHHHHHHHHhc---------C---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002431 76 AWKEKGDIDLAIRYYLVAIEL---------R---------PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDA 137 (922)
Q Consensus 76 ~~~~~g~~~~A~~~~~~al~~---------~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 137 (922)
++++.|.|.-+..+|.+++.. . ...-+..++.|..|...|+.-.|.++|.++....-.++..
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrl 371 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRL 371 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHH
Confidence 999999999999999999851 1 1235678889999999999999999999999998889999
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHH--------------H--Hhh-----CCC---cHHHHHHHHHHHHHcC-----CH
Q 002431 138 HSNLGNLMKAQGL---VQEAYSCYLE--------------A--LRI-----QPT---FAIAWSNLAGLFMESG-----DL 185 (922)
Q Consensus 138 ~~~la~~~~~~g~---~~~A~~~~~~--------------a--l~~-----~p~---~~~~~~~la~~~~~~g-----~~ 185 (922)
|..++.++....+ .++......+ . ++. .+. -+..-..++.+..+.+ .-
T Consensus 372 WLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~ 451 (696)
T KOG2471|consen 372 WLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEK 451 (696)
T ss_pred HHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchh
Confidence 9999988764221 1111111111 0 000 000 0111112222222111 00
Q ss_pred HHHHHHHHHHHhc----------------------------CC-CCH-----------HHHHHHHHHHHHcCChHHHHHH
Q 002431 186 NRALQYYKEAVKL----------------------------KP-TFP-----------DAYLNLGNVYKALGMPQEAIMC 225 (922)
Q Consensus 186 ~~A~~~~~~~l~~----------------------------~p-~~~-----------~~~~~l~~~~~~~g~~~~A~~~ 225 (922)
..--..+.-+... .| +.+ .++...+.+-...|+.-.|+..
T Consensus 452 q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~ 531 (696)
T KOG2471|consen 452 QDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSA 531 (696)
T ss_pred hcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHH
Confidence 0000000000000 01 111 1456677778889999999999
Q ss_pred HHHHHhhCCChhHHHhHHHHH-----HHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002431 226 YQRAVQTRPNAIAFGNLASTY-----YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300 (922)
Q Consensus 226 ~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 300 (922)
-+++++...-..++..+|.+| +...+..+|...+.--+--+.+..-.+ .....+.+.+--+.++..-...
T Consensus 532 a~kLLq~~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~-----n~~Df~~~~~~~e~l~~s~~r~ 606 (696)
T KOG2471|consen 532 ATKLLQLADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPY-----NQEDFDQWWKHTETLDPSTGRT 606 (696)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCccccccc-----chhhhhhhhccccccCCcCCCC
Confidence 999998754466666665555 456777777776654321100100000 0001111110001111111111
Q ss_pred CC---------ChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCC--CCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Q 002431 301 PS---------HPQALTNLGNIYMEWNMLPAAASYYKATLAVTT--GLSAPFNNLAVIYKQQGNYADAISCYNEVL 365 (922)
Q Consensus 301 p~---------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al 365 (922)
++ ....++++|.++.-+|++++|..++..+..+-+ .++.+......+-.+.|+...|+..+++.-
T Consensus 607 ~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 607 RQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred cccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence 11 123567888888888888888888887777665 334444444444557888888888877753
|
|
| >cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.4e-05 Score=82.77 Aligned_cols=142 Identities=11% Similarity=0.110 Sum_probs=91.4
Q ss_pred CcEEEEecCCCC-CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 712 DKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 712 ~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
..+||.+++... +....+++...+.++..+.-.++..|.... .. ..+ +++|.+.+++|..++ +..+
T Consensus 239 ~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~-~~--------~~~-~~~v~~~~~~p~~~l---l~~~ 305 (401)
T cd03784 239 RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGL-GA--------EDL-PDNVRVVDFVPHDWL---LPRC 305 (401)
T ss_pred CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccc-cc--------cCC-CCceEEeCCCCHHHH---hhhh
Confidence 346777777653 344556666666666665444555665432 11 244 588999999876555 4669
Q ss_pred cEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHH
Q 002431 791 DLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALT 867 (922)
Q Consensus 791 dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~~~~~~~ 867 (922)
|+|+ ..+|..|+.||+++|+|+|..+-..- .-..+..+...|..- .+.. +.++..+.+.++.+++ .+++.+
T Consensus 306 d~~I---~hgG~~t~~eal~~GvP~v~~P~~~d-Q~~~a~~~~~~G~g~-~l~~~~~~~~~l~~al~~~l~~~-~~~~~~ 379 (401)
T cd03784 306 AAVV---HHGGAGTTAAALRAGVPQLVVPFFGD-QPFWAARVAELGAGP-ALDPRELTAERLAAALRRLLDPP-SRRRAA 379 (401)
T ss_pred heee---ecCCchhHHHHHHcCCCEEeeCCCCC-cHHHHHHHHHCCCCC-CCCcccCCHHHHHHHHHHHhCHH-HHHHHH
Confidence 9999 56668999999999999998865422 222345566667655 4432 6788888888888754 444444
Q ss_pred HHHHh
Q 002431 868 NKLKS 872 (922)
Q Consensus 868 ~~~~~ 872 (922)
+..++
T Consensus 380 ~~~~~ 384 (401)
T cd03784 380 ALLRR 384 (401)
T ss_pred HHHHH
Confidence 44433
|
Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics. |
| >COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-05 Score=83.42 Aligned_cols=305 Identities=12% Similarity=0.020 Sum_probs=173.9
Q ss_pred hhhhHHhhcCCCCCeEEEEEecC-CCCChH-HHHHHHhccCceEECCCCCHHHHHHHHHhCCCeEEEcCCCcCCCCchhh
Q 002431 553 HLMGSVFGMHNKENVEVFCYALS-PNDGTE-WRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEI 630 (922)
Q Consensus 553 ~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~ 630 (922)
..+.+|++.+-+..-++.+..+. ...+.+ ..+.+...+ .+..++--....+.+.++..++|++|-..+-.-+|.+.-
T Consensus 63 ~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v-~h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtElWPnli~e 141 (419)
T COG1519 63 LAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSV-IHQYLPLDLPIAVRRFLRKWRPKLLIIMETELWPNLINE 141 (419)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCe-EEEecCcCchHHHHHHHHhcCCCEEEEEeccccHHHHHH
Confidence 56778877776553333332222 222221 122222222 233333223567888999999999998887777777777
Q ss_pred hhcCCCceEEec--------cccC-----CCCCCCcccEEEecCccCCcCccCCCccceeecCCccccCCCccccccCCC
Q 002431 631 FAMQPAPIQVSY--------MGFP-----GTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLD 697 (922)
Q Consensus 631 ~~~~~apvq~~~--------~g~~-----~t~g~~~~d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~ 697 (922)
..++.+|+.+.- -+|- ...-...+|.+++ -++. ..|+...|--.-+.+..+=...-.++
T Consensus 142 ~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~a-----Qse~---D~~Rf~~LGa~~v~v~GNlKfd~~~~ 213 (419)
T COG1519 142 LKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILA-----QSEE---DAQRFRSLGAKPVVVTGNLKFDIEPP 213 (419)
T ss_pred HHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeee-----cCHH---HHHHHHhcCCcceEEecceeecCCCC
Confidence 777889987641 1110 0111233444444 1111 12333333221111111110000001
Q ss_pred CCC----CCCcCCCCCCCCcEEEEecCCCCCCCHH-HHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCC--
Q 002431 698 PNC----QPKRSDYGLPEDKFIFACFNQLYKMDPE-IFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPD-- 770 (922)
Q Consensus 698 ~~~----~~~r~~~~l~~~~~~~~~~~~~~K~~~~-~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~-- 770 (922)
+.. ...|..++.+...+++++- ..+-++ .++++.+++++.||..|++|--.|.--..+.+.+++.|+...
T Consensus 214 ~~~~~~~~~~r~~l~~~r~v~iaaST---H~GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~r 290 (419)
T COG1519 214 PQLAAELAALRRQLGGHRPVWVAAST---HEGEEEIILDAHQALKKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRR 290 (419)
T ss_pred hhhHHHHHHHHHhcCCCCceEEEecC---CCchHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHHHHHHcCCeEEee
Confidence 111 1267777776443444443 556555 899999999999999999997777645678888888877411
Q ss_pred ----------ceEEcCCCCcHHHHHhccCCcEEecC--CCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCC
Q 002431 771 ----------QIIFTDVAMKQEHIRRSSLADLFLDT--PLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLG 838 (922)
Q Consensus 771 ----------rv~f~~~~~~~~~~~~~~~~dv~l~~--~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~ 838 (922)
.|.+... --+...+|..+||+.-- +--.||--.+|+.++|+|||+=+-..--+.....++++=|.
T Consensus 291 S~~~~~~~~tdV~l~Dt--mGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~- 367 (419)
T COG1519 291 SQGDPPFSDTDVLLGDT--MGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAG- 367 (419)
T ss_pred cCCCCCCCCCcEEEEec--HhHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEeCCccccHHHHHHHHHhcCCe-
Confidence 2222211 24677789999998644 33378888999999999999866554444444444433232
Q ss_pred CccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002431 839 EEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (922)
Q Consensus 839 ~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~ 874 (922)
++++|.+......-.|..|++.|.++++++.+.+
T Consensus 368 --~~v~~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v 401 (419)
T COG1519 368 --LQVEDADLLAKAVELLLADEDKREAYGRAGLEFL 401 (419)
T ss_pred --EEECCHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 6677755544444455557999999888776654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.9e-05 Score=68.96 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 219 PQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI-GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL 297 (922)
Q Consensus 219 ~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 297 (922)
++....-..+.+...|.....+.++..+.+.|++.+|...|++++ +...++...+..+++..+..+++..|...+++..
T Consensus 72 P~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 72 PERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred hhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 333333344444444554455555555555555555555555555 3444445455555555555555555555555555
Q ss_pred hhCCC--ChHHHHhHHHHHHHcCChhHHHHHHHHHHhc
Q 002431 298 SLQPS--HPQALTNLGNIYMEWNMLPAAASYYKATLAV 333 (922)
Q Consensus 298 ~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 333 (922)
+.+|. .++....++..+...|++.+|...|+.++..
T Consensus 152 e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 152 EYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred hcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 54443 2333444444444444444444444444433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.8e-06 Score=70.77 Aligned_cols=94 Identities=23% Similarity=0.258 Sum_probs=52.9
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC---cHHHHHHHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT---MAEAHANLA 413 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 413 (922)
+.+.++.++-..|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++.+...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34455555555566666666666655543322 335555666666666666666666666655555 445555555
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 002431 414 SAYKDSGHVEAAIKSYKQAL 433 (922)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~al 433 (922)
.++...|+.++|++.+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 56666666666666555544
|
|
| >TIGR02919 accessory Sec system glycosyltransferase GtfB | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.1e-06 Score=90.18 Aligned_cols=132 Identities=11% Similarity=0.144 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHH
Q 002431 727 PEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTG 805 (922)
Q Consensus 727 ~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~ 805 (922)
+..++++.++.+++|++.|-| |.+..-...|.+. .+. ++-+.|.|..+ .+.-.+|+.||++||++..+| +.++
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~I-ga~te~s~kL~~L-~~y---~nvvly~~~~~-~~l~~ly~~~dlyLdin~~e~~~~al 364 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHI-AALTEMSSKLMSL-DKY---DNVKLYPNITT-QKIQELYQTCDIYLDINHGNEILNAV 364 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEE-EecCcccHHHHHH-Hhc---CCcEEECCcCh-HHHHHHHHhccEEEEccccccHHHHH
Confidence 899999999999999999998 6554434677777 555 46678888654 345577999999999999999 9999
Q ss_pred HHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccc-cCCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002431 806 TDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI-VNSMKEYEERAVSLALDRQKLQALTNKLKS 872 (922)
Q Consensus 806 ~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i-~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~ 872 (922)
.||+..|+|||+........... .++.++ ..++++++++++.+++|++..+..-.+-++
T Consensus 365 ~eA~~~G~pI~afd~t~~~~~~i--------~~g~l~~~~~~~~m~~~i~~lL~d~~~~~~~~~~q~~ 424 (438)
T TIGR02919 365 RRAFEYNLLILGFEETAHNRDFI--------ASENIFEHNEVDQLISKLKDLLNDPNQFRELLEQQRE 424 (438)
T ss_pred HHHHHcCCcEEEEecccCCcccc--------cCCceecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999877543322211 012122 368999999999999999765554444333
|
Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.2e-06 Score=76.56 Aligned_cols=103 Identities=21% Similarity=0.357 Sum_probs=81.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCC-----chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 002431 311 GNIYMEWNMLPAAASYYKATLAVTTGL-----SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385 (922)
Q Consensus 311 a~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 385 (922)
|.-++..|+|++|..-|..++...|.. +..|.+.|.++.++++++.|+....++++++|.+..++..++.+|.++
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 444555556666666666666555543 234778889999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 002431 386 GRVTDAIQDYIRAITIRPTMAEAHANLA 413 (922)
Q Consensus 386 g~~~~A~~~~~~al~~~p~~~~~~~~la 413 (922)
..+++|+..|++.++.+|...++.-..+
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 9999999999999999998665544333
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0083 Score=65.47 Aligned_cols=394 Identities=11% Similarity=0.008 Sum_probs=262.9
Q ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Q 002431 16 KQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAW-KEKGDIDLAIRYYLVAI 94 (922)
Q Consensus 16 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al 94 (922)
+.+...|...+...|.....|...|..-.+.|..+.+.+.|++.+..-|.....|...-... ...|+.+.-...|++|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 55667788888889998899999999999999999999999999999998888777654433 35678888888999998
Q ss_pred hcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhh-
Q 002431 95 ELRPN---FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ------GLVQEAYSCYLEALRI- 164 (922)
Q Consensus 95 ~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~- 164 (922)
..... ....|-........++++..-..+|++.++.-......++..=.-+.++ ...+++.+.-......
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~ 221 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS 221 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence 86543 3456777777778889999999999999876433322222221111111 1122222211111100
Q ss_pred -CCCc---HHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CC
Q 002431 165 -QPTF---AIAWSNLA-GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT-----RP 234 (922)
Q Consensus 165 -~p~~---~~~~~~la-~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p 234 (922)
.+.. ...+..-+ .+--..+..+++...+.+. ....-.++.......+.+..++..+.. .|
T Consensus 222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~----------~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkp 291 (577)
T KOG1258|consen 222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRI----------VSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKP 291 (577)
T ss_pred hcccccChhHHHHHHHhhccCccchhhHHHHHHHHH----------HHHHHHHHHhhHhHHHHHHhhhhhccccccccCc
Confidence 0000 00000000 0000001111111111111 111112333334445555556555542 22
Q ss_pred C----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCChHHHHh
Q 002431 235 N----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL-QPSHPQALTN 309 (922)
Q Consensus 235 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~ 309 (922)
. ...|..........|+++...-.+++++--.....+.|...+......|+.+-|...+..+.+. .|..+.+...
T Consensus 292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 2 4567777778888999999999999998777777889999999999999999999988888886 4666777777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHH---HHHHHHccCCCC----HHHHHHHHHHH
Q 002431 310 LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS---CYNEVLRIDPLA----ADGLVNRGNTY 382 (922)
Q Consensus 310 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~p~~----~~~~~~l~~~~ 382 (922)
-+......|++..|..++++..+..|+...+-...+....++|+.+.+.. ++.....- ..+ ...+...++..
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~-~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG-KENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc-ccCcchhHHHHHHHHHHH
Confidence 88888888999999999999998889888888888888889999988884 33333221 122 22333444433
Q ss_pred -HHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 002431 383 -KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (922)
Q Consensus 383 -~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (922)
.-.++.+.|...+.++++..|.+...+..+.......+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 34588999999999999999999888888877766654
|
|
| >PF13524 Glyco_trans_1_2: Glycosyl transferases group 1 | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.6e-07 Score=74.57 Aligned_cols=90 Identities=11% Similarity=0.113 Sum_probs=68.8
Q ss_pred EEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002431 792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKL 870 (922)
Q Consensus 792 v~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~ 870 (922)
|+|.|...+| +...+|+|++|+|||+-....+.. +-.-|... +.+.|++++++++..+.+||+.++.++++.
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~------~~~~~~~~-~~~~~~~el~~~i~~ll~~~~~~~~ia~~a 73 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLRE------IFEDGEHI-ITYNDPEELAEKIEYLLENPEERRRIAKNA 73 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHH------HcCCCCeE-EEECCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4677766677 889999999999999754321111 11114344 566799999999999999999999999999
Q ss_pred HhhcccCCCCChHHHHHHHH
Q 002431 871 KSVRLTCPLFDTARWVKNLE 890 (922)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~e 890 (922)
++.+. ..++.+..++++.
T Consensus 74 ~~~v~--~~~t~~~~~~~il 91 (92)
T PF13524_consen 74 RERVL--KRHTWEHRAEQIL 91 (92)
T ss_pred HHHHH--HhCCHHHHHHHHH
Confidence 99884 3589888887764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.7e-06 Score=68.26 Aligned_cols=62 Identities=29% Similarity=0.537 Sum_probs=31.4
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHH
Q 002431 347 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA 408 (922)
Q Consensus 347 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 408 (922)
+|.+.+++++|+++++++++.+|+++..+..+|.++..+|++++|...++++++..|+++.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 44445555555555555555555555555555555555555555555555555555544433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.8e-06 Score=67.36 Aligned_cols=66 Identities=23% Similarity=0.310 Sum_probs=39.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002431 6 AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYG 71 (922)
Q Consensus 6 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 71 (922)
...+.+.++|++|++.+++++..+|.++..+..+|.++...|++++|++.|+++++..|++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 345555666666666666666666666666666666666666666666666666666665554443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.9e-05 Score=69.97 Aligned_cols=85 Identities=21% Similarity=0.204 Sum_probs=65.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR---FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA---DAWS 105 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 105 (922)
.+..++..|...++.|+|++|++.|+.+....|. ...+.+.++.+|++.+++++|+..+++.++++|.++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 4667788888888888888888888888877765 357788888888888888888888888888877754 3666
Q ss_pred HHHHHHHHcCC
Q 002431 106 NLASAYMRKGR 116 (922)
Q Consensus 106 ~la~~~~~~g~ 116 (922)
..|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 67766666544
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00015 Score=77.14 Aligned_cols=108 Identities=27% Similarity=0.391 Sum_probs=95.3
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 002431 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAA-DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (922)
Q Consensus 342 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (922)
+.-|......|+...|++++..++...|... ..+.+++.++.+.|...+|-..+.+++.+....+-.++.+|.+|..+.
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK 690 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence 3345555678999999999999999988654 468899999999999999999999999999888899999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHh
Q 002431 421 HVEAAIKSYKQALLLRPDFPEATCNLLHT 449 (922)
Q Consensus 421 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 449 (922)
+.+.|++.|++++++.|+++..-..+...
T Consensus 691 ~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 691 NISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 99999999999999999999887766544
|
|
| >TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.1e-05 Score=85.16 Aligned_cols=297 Identities=11% Similarity=0.040 Sum_probs=154.1
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCC-CeEEEEEecCCCCChHH---HHHHHhc-c----CceEECCC---CC-----
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEW---RQRTQSE-A----EHFVDVSA---MS----- 600 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~---~~~~~~~-~----~~~~~~~~---~~----- 600 (922)
||.++.+ .-|-.--+.++++.+.+. .||+.+..++..-+..+ ...+... + +....+.+ -+
T Consensus 2 ki~~v~G---tRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (365)
T TIGR03568 2 KICVVTG---TRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSM 78 (365)
T ss_pred eEEEEEe---cChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCCHHHHH
Confidence 5666664 345555677888888763 69999999887654322 2223322 2 12222321 11
Q ss_pred ---HHHHHHHHHhCCCeEEEcCCCcCCCCchhhhh------cCCCceEEeccccCCCCCC-CcccE----EEecCccCCc
Q 002431 601 ---SDMIAKLINEDKIQILINLNGYTKGARNEIFA------MQPAPIQVSYMGFPGTTGA-SYIDY----LVTDEFVSPL 666 (922)
Q Consensus 601 ---~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~------~~~apvq~~~~g~~~t~g~-~~~d~----~~~d~~~~~~ 666 (922)
...+.+.+.+.++|+++ .+|.+...++ ..--||.=..-|- -|.|. +.+.. .+++.+++|.
T Consensus 79 ~~~~~~~~~~~~~~~Pd~vl-----v~GD~~~~la~alaA~~~~IPv~HveaG~-rs~~~~eE~~r~~i~~la~l~f~~t 152 (365)
T TIGR03568 79 GLTIIGFSDAFERLKPDLVV-----VLGDRFEMLAAAIAAALLNIPIAHIHGGE-VTEGAIDESIRHAITKLSHLHFVAT 152 (365)
T ss_pred HHHHHHHHHHHHHhCCCEEE-----EeCCchHHHHHHHHHHHhCCcEEEEECCc-cCCCCchHHHHHHHHHHHhhccCCC
Confidence 25678889999999994 4554422221 2234765222221 11221 11112 2345555665
Q ss_pred CccC-CC------ccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCC-CcEEEEecCCCC--CCC--HHHHHHHH
Q 002431 667 RYAH-IY------SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPE-DKFIFACFNQLY--KMD--PEIFNTWC 734 (922)
Q Consensus 667 ~~~~-~~------~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~-~~~~~~~~~~~~--K~~--~~~~~~~~ 734 (922)
+... .. .++++..-+..+.. .............+++|++. +.+++..+.+.. |.. +.+-.+..
T Consensus 153 ~~~~~~L~~eg~~~~~i~~tG~~~iD~-----l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~ 227 (365)
T TIGR03568 153 EEYRQRVIQMGEDPDRVFNVGSPGLDN-----ILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLK 227 (365)
T ss_pred HHHHHHHHHcCCCCCcEEEECCcHHHH-----HHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHH
Confidence 4311 11 12232222111100 00000111223567788874 356666777543 332 33444444
Q ss_pred HHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCC
Q 002431 735 NILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLP 814 (922)
Q Consensus 735 ~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~P 814 (922)
.+.+...+..++.-..++. ...+++.+.+..-..++|.+.+.++..+++.+++.+|+++ .+++....||.++|+|
T Consensus 228 ~L~~~~~~~~vi~P~~~p~-~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vi----tdSSggi~EA~~lg~P 302 (365)
T TIGR03568 228 ALDELNKNYIFTYPNADAG-SRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVI----GNSSSGIIEAPSFGVP 302 (365)
T ss_pred HHHHhccCCEEEEeCCCCC-chHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEE----EcChhHHHhhhhcCCC
Confidence 4333322333322222232 3333333333321136899999999999999999999999 3333344899999999
Q ss_pred eeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHH
Q 002431 815 MITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQK 862 (922)
Q Consensus 815 vv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~ 862 (922)
||++.. ...+|.. |-+-.+|..++++.++.+.++ .+++.
T Consensus 303 vv~l~~-R~e~~~~-------g~nvl~vg~~~~~I~~a~~~~-~~~~~ 341 (365)
T TIGR03568 303 TINIGT-RQKGRLR-------ADSVIDVDPDKEEIVKAIEKL-LDPAF 341 (365)
T ss_pred EEeecC-Cchhhhh-------cCeEEEeCCCHHHHHHHHHHH-hChHH
Confidence 998763 3333332 333312556889999888884 45543
|
This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate. |
| >COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.9e-05 Score=78.83 Aligned_cols=137 Identities=15% Similarity=0.148 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChh
Q 002431 724 KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHT 803 (922)
Q Consensus 724 K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~ 803 (922)
+++..+-+++..+.+ +..++... |....+.++..-.+.|+ +.+.++ ..+...+|+.+|+++ .-.|++
T Consensus 197 ~ln~~v~~~~~~l~~---~~~v~~~~-G~~~~~~~~~~~~~~~~----~~v~~f--~~dm~~~~~~ADLvI---sRaGa~ 263 (357)
T COG0707 197 ALNDLVPEALAKLAN---RIQVIHQT-GKNDLEELKSAYNELGV----VRVLPF--IDDMAALLAAADLVI---SRAGAL 263 (357)
T ss_pred HHHHHHHHHHHHhhh---CeEEEEEc-CcchHHHHHHHHhhcCc----EEEeeH--HhhHHHHHHhccEEE---eCCccc
Confidence 445444444444332 34444333 32225677777777776 677776 345777799999998 357899
Q ss_pred HHHHHHHcCCCeeeecCCcc---hhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002431 804 TGTDILWAGLPMITLPLEKM---ATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (922)
Q Consensus 804 t~~eal~~g~Pvv~~~~~~~---~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~ 874 (922)
|+.|.+++|+|+|-.+-+.. ....-+..|...|..- ++.+ +++.+++.+.++.++++.+++|+++.++..
T Consensus 264 Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~-~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~ 339 (357)
T COG0707 264 TIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAAL-VIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLG 339 (357)
T ss_pred HHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEE-EeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 99999999999998876655 4555677787778765 4432 477999999999999999999999998864
|
|
| >PRK09814 beta-1,6-galactofuranosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.1e-06 Score=87.77 Aligned_cols=132 Identities=16% Similarity=0.089 Sum_probs=91.6
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEE
Q 002431 714 FIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLF 793 (922)
Q Consensus 714 ~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~ 793 (922)
++++.++++.|.. . + ....|+.+|+++|+|+. .+ +. .++|.|.|+++.++....|+. |+.
T Consensus 170 ~~i~yaG~l~k~~-~-l------~~~~~~~~l~i~G~g~~-~~---------~~-~~~V~f~G~~~~eel~~~l~~-~~g 229 (333)
T PRK09814 170 KKINFAGNLEKSP-F-L------KNWSQGIKLTVFGPNPE-DL---------EN-SANISYKGWFDPEELPNELSK-GFG 229 (333)
T ss_pred ceEEEecChhhch-H-H------HhcCCCCeEEEECCCcc-cc---------cc-CCCeEEecCCCHHHHHHHHhc-CcC
Confidence 4566667776643 1 1 11357889999998875 22 34 479999999999999888876 544
Q ss_pred ecCC------------CCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHH
Q 002431 794 LDTP------------LCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQ 861 (922)
Q Consensus 794 l~~~------------~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~ 861 (922)
|-+. .++.+.-+.++|++|+|||+......+.-| .. +-.+ +++++.++..+++..+ +++
T Consensus 230 Lv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~~~V-----~~-~~~G-~~v~~~~el~~~l~~~--~~~ 300 (333)
T PRK09814 230 LVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIADFI-----VE-NGLG-FVVDSLEELPEIIDNI--TEE 300 (333)
T ss_pred eEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHHHHH-----Hh-CCce-EEeCCHHHHHHHHHhc--CHH
Confidence 3221 355677789999999999986654444333 33 3334 6667889988888886 467
Q ss_pred HHHHHHHHHHhhc
Q 002431 862 KLQALTNKLKSVR 874 (922)
Q Consensus 862 ~~~~~~~~~~~~~ 874 (922)
.+.+|+++.++..
T Consensus 301 ~~~~m~~n~~~~~ 313 (333)
T PRK09814 301 EYQEMVENVKKIS 313 (333)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888887753
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0014 Score=63.27 Aligned_cols=184 Identities=14% Similarity=0.142 Sum_probs=135.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHH
Q 002431 176 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 255 (922)
Q Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 255 (922)
+.+....|+..+.+.-+..... ....+..........+..++.+++-+. ...+.+..++.-.|+|.-.
T Consensus 129 Ae~~~~lgnpqesLdRl~~L~~-------~V~~ii~~~e~~~~~ESsv~lW~KRl~-----~Vmy~~~~~llG~kEy~iS 196 (366)
T KOG2796|consen 129 AELQQYLGNPQESLDRLHKLKT-------VVSKILANLEQGLAEESSIRLWRKRLG-----RVMYSMANCLLGMKEYVLS 196 (366)
T ss_pred HHHHHhcCCcHHHHHHHHHHHH-------HHHHHHHHHHhccchhhHHHHHHHHHH-----HHHHHHHHHHhcchhhhhh
Confidence 4444555666655554444322 111222223333333555666655443 3566777888888889999
Q ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCChHHHHhHHHHHHHcCChhHHHHHHH
Q 002431 256 ILYYKQAIGCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ------PSHPQALTNLGNIYMEWNMLPAAASYYK 328 (922)
Q Consensus 256 ~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~ 328 (922)
...+.+.++.+ |..+.....+|.+..+.|+.+.|..+|+..-+.. ..+..+..+.+.++.-.+++.+|...|.
T Consensus 197 ~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~ 276 (366)
T KOG2796|consen 197 VDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFT 276 (366)
T ss_pred HHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHh
Confidence 99999998776 6677778889999999999999999998654332 2234567778888889999999999999
Q ss_pred HHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 002431 329 ATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371 (922)
Q Consensus 329 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 371 (922)
+.+..++.++.+.++.+.|+.-.|+..+|++.++.+++..|..
T Consensus 277 ~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 277 EILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999999999999999999999998864
|
|
| >TIGR01426 MGT glycosyltransferase, MGT family | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.4e-05 Score=83.27 Aligned_cols=163 Identities=13% Similarity=0.219 Sum_probs=108.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
..+||.+++......+.+++...+.+...+-..++..|.+.. ...+. .+ +++|.+.+++|..++ +..+|
T Consensus 225 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~-~~~~~------~~-~~~v~~~~~~p~~~l---l~~~~ 293 (392)
T TIGR01426 225 RPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD-PADLG------EL-PPNVEVRQWVPQLEI---LKKAD 293 (392)
T ss_pred CCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC-hhHhc------cC-CCCeEEeCCCCHHHH---HhhCC
Confidence 347888888876666667776666676676545555565432 22221 24 578999999886544 56799
Q ss_pred EEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHHHH
Q 002431 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQALTN 868 (922)
Q Consensus 792 v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~~~~ 868 (922)
+++ ..+|..|+.|||++|+|+|+.+...-.. .-+..+...|... .+. -+.+++.+++.+++.|++.++..++
T Consensus 294 ~~I---~hgG~~t~~Eal~~G~P~v~~p~~~dq~-~~a~~l~~~g~g~-~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~ 368 (392)
T TIGR01426 294 AFI---THGGMNSTMEALFNGVPMVAVPQGADQP-MTARRIAELGLGR-HLPPEEVTAEKLREAVLAVLSDPRYAERLRK 368 (392)
T ss_pred EEE---ECCCchHHHHHHHhCCCEEecCCcccHH-HHHHHHHHCCCEE-EeccccCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 998 3566778999999999999987553333 3345566677765 443 2578899999999999987666533
Q ss_pred HHHhhcccCCCCChHHHHHHHHHHH
Q 002431 869 KLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
+++.+. ..-..+..++.+++..
T Consensus 369 -l~~~~~--~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 369 -MRAEIR--EAGGARRAADEIEGFL 390 (392)
T ss_pred -HHHHHH--HcCCHHHHHHHHHHhh
Confidence 333332 2346677777777654
|
This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.9e-05 Score=64.02 Aligned_cols=97 Identities=21% Similarity=0.262 Sum_probs=80.7
Q ss_pred HhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHH
Q 002431 308 TNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA----ADGLVNRGNTYK 383 (922)
Q Consensus 308 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~ 383 (922)
-.-|..+...|+.+.|++.|.+++...|..+.+|++.+..+.-+|+.++|+.-+++++++..+. -.++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3456677788888888888888888888888888888999989999999999999998875433 347888999999
Q ss_pred HhCCHHHHHHHHHHHHhhCCC
Q 002431 384 EIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 384 ~~g~~~~A~~~~~~al~~~p~ 404 (922)
..|+-+.|...|+.+-++...
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCH
Confidence 999999999999998887654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.5e-06 Score=85.65 Aligned_cols=69 Identities=28% Similarity=0.261 Sum_probs=59.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002431 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA---HANLASAYKDSGHVEAAIKSYKQALLL 435 (922)
Q Consensus 367 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 435 (922)
.+|+++..++++|.+|.++|++++|+..|+++++++|++.++ |+++|.+|..+|++++|++.+++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467888888888888888888888888888888888888754 888888888888888888888888887
|
|
| >TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.7e-05 Score=76.76 Aligned_cols=234 Identities=14% Similarity=0.091 Sum_probs=120.3
Q ss_pred HhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC-----HHHHHHHHHhCCCeEEEcCCCcCCCCchhhhh
Q 002431 558 VFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS-----SDMIAKLINEDKIQILINLNGYTKGARNEIFA 632 (922)
Q Consensus 558 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~ 632 (922)
|.+.+....+++.+++..... .+.+.++..+...+.+++.+ ..++.+.|++.++|++|--...+...-...+.
T Consensus 23 LA~~l~~~g~~v~f~~~~~~~--~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~k 100 (279)
T TIGR03590 23 LARALHAQGAEVAFACKPLPG--DLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVDHYGLDADWEKLIK 100 (279)
T ss_pred HHHHHHHCCCEEEEEeCCCCH--HHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHH
Confidence 445554456899888865432 34566777777776665532 34688999999999998554433221111111
Q ss_pred cCCCceEEeccccCCCCCCCcccEEEecCccCCcCccCCCccceeecC-CccccCCC--ccccccCCCCCCCCCcCCCCC
Q 002431 633 MQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVP-HCYFVNDY--KQKNMDVLDPNCQPKRSDYGL 709 (922)
Q Consensus 633 ~~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~~~e~~~~lp-~~~~~~~~--~~~~~~~~~~~~~~~r~~~~l 709 (922)
...|..+. +.-.+..+. ..|+++-.... . ... .|.+. +| ++.+...+ ....+.+........+.+
T Consensus 101 -~~~~~l~~-iDD~~~~~~-~~D~vin~~~~-~-~~~-~y~~~---~~~~~~~l~G~~Y~~lr~eF~~~~~~~~~~~--- 168 (279)
T TIGR03590 101 -EFGRKILV-IDDLADRPH-DCDLLLDQNLG-A-DAS-DYQGL---VPANCRLLLGPSYALLREEFYQLATANKRRK--- 168 (279)
T ss_pred -HhCCeEEE-EecCCCCCc-CCCEEEeCCCC-c-CHh-Hhccc---CcCCCeEEecchHHhhhHHHHHhhHhhhccc---
Confidence 12333332 222111111 45666543221 1 100 11110 22 11111111 000001111100111111
Q ss_pred CCCcEEEEecCC--CCCCCHHHHHHHHHHHhhCCCe-EEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHh
Q 002431 710 PEDKFIFACFNQ--LYKMDPEIFNTWCNILRRVPNS-ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRR 786 (922)
Q Consensus 710 ~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~-~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~ 786 (922)
+...++.+++. ..+.+..++++..++. ++. ..+++|.+....+++++..... .+|.+.+.+ .+...+
T Consensus 169 -~~~~iLi~~GG~d~~~~~~~~l~~l~~~~---~~~~i~vv~G~~~~~~~~l~~~~~~~----~~i~~~~~~--~~m~~l 238 (279)
T TIGR03590 169 -PLRRVLVSFGGADPDNLTLKLLSALAESQ---INISITLVTGSSNPNLDELKKFAKEY----PNIILFIDV--ENMAEL 238 (279)
T ss_pred -ccCeEEEEeCCcCCcCHHHHHHHHHhccc---cCceEEEEECCCCcCHHHHHHHHHhC----CCEEEEeCH--HHHHHH
Confidence 11234555553 3455667776665432 232 3346676533366777776542 478888773 466677
Q ss_pred ccCCcEEecCCCCCChhHHHHHHHcCCCeeeec
Q 002431 787 SSLADLFLDTPLCNAHTTGTDILWAGLPMITLP 819 (922)
Q Consensus 787 ~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~ 819 (922)
+..+|+++. .||+|+.|++++|+|+|+.+
T Consensus 239 m~~aDl~Is----~~G~T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 239 MNEADLAIG----AAGSTSWERCCLGLPSLAIC 267 (279)
T ss_pred HHHCCEEEE----CCchHHHHHHHcCCCEEEEE
Confidence 899999996 46799999999999999764
|
This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.02 Score=60.87 Aligned_cols=426 Identities=13% Similarity=0.088 Sum_probs=211.6
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Q 002431 18 ALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD-IDLAIRYYLVAIEL 96 (922)
Q Consensus 18 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 96 (922)
-..+|+.+....+.+...|........+.+.+.+-.+.|.+++..+|+++..|..-|.-.+..+. .+.|...|.+.+..
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 34567777777777778887777766667778888888888888888888888887777766665 78888888888888
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------------------CCHHH
Q 002431 97 RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ-----------------------GLVQE 153 (922)
Q Consensus 97 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----------------------g~~~~ 153 (922)
+|+++..|...-..-..- -+=...-.+.+..+..+.+.-...+...... ....+
T Consensus 170 npdsp~Lw~eyfrmEL~~---~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~ke 246 (568)
T KOG2396|consen 170 NPDSPKLWKEYFRMELMY---AEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKE 246 (568)
T ss_pred CCCChHHHHHHHHHHHHH---HHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHH
Confidence 888877765443332110 0000000111111111110000000000000 00000
Q ss_pred -HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002431 154 -AYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 154 -A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (922)
-...++-.....|.++..|..++.-... .+.+..- .+. .+......-.-+-+....+|+.+++.
T Consensus 247 l~k~i~d~~~~~~~~np~~~~~laqr~l~---------i~~~tdl-~~~-----~~~~~~~~~~~k~s~~~~v~ee~v~~ 311 (568)
T KOG2396|consen 247 LQKNIIDDLQSKAPDNPLLWDDLAQRELE---------ILSQTDL-QHT-----DNQAKAVEVGSKESRCCAVYEEAVKT 311 (568)
T ss_pred HHHHHHHHHhccCCCCCccHHHHHHHHHH---------HHHHhhc-cch-----hhhhhchhcchhHHHHHHHHHHHHHH
Confidence 0001111112244444444444332111 0000000 000 00001111111122334566666655
Q ss_pred CCChhHHHhHHHHHHHc-----C-ChHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhCCC
Q 002431 233 RPNAIAFGNLASTYYER-----G-QADMAILYYKQAI---GCDPRFLEAYNNLGNALKDVGRVDEA-IQCYNQCLSLQPS 302 (922)
Q Consensus 233 ~p~~~~~~~l~~~~~~~-----g-~~~~A~~~~~~~l---~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~p~ 302 (922)
-+....|......+... | ....-...++++. ...+....-|..+..++.......++ ....... ..+
T Consensus 312 l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~---f~~ 388 (568)
T KOG2396|consen 312 LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL---FRD 388 (568)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH---hcc
Confidence 55533333332222221 1 2233344444444 23455555666666666655543332 2222222 334
Q ss_pred ChHHHHhHHHHHHHcCChhHHHHHHHH---HHhcCCCCc--hhhhhHHHHHHHcCC-HHHHHH--HHHHHHcc-CCCCHH
Q 002431 303 HPQALTNLGNIYMEWNMLPAAASYYKA---TLAVTTGLS--APFNNLAVIYKQQGN-YADAIS--CYNEVLRI-DPLAAD 373 (922)
Q Consensus 303 ~~~~~~~la~~~~~~~~~~~A~~~~~~---a~~~~~~~~--~~~~~la~~~~~~g~-~~~A~~--~~~~al~~-~p~~~~ 373 (922)
+...|...-........ .+.-.|.+ .++..+... ..|.... .++ ...... .+..+... .++...
T Consensus 389 s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~~t 461 (568)
T KOG2396|consen 389 SGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADSVT 461 (568)
T ss_pred hHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCceee
Confidence 45555444444332211 11111111 111111111 1111111 222 222211 11111111 344444
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhc
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS--GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 451 (922)
.-..+-..+.+.|-+.+|...|.+...+-|-....+..+.+.-..+ -+...+..+|+.++...-.+++.|.+.+..-.
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEEL 541 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhc
Confidence 5555667778888889999999998888888777776666654332 24788899999999887789999999888888
Q ss_pred ccCChhhHhHHHHHHHHHHH
Q 002431 452 CVCSWEDRDRMFSEVEGIIR 471 (922)
Q Consensus 452 ~~~~~~~a~~~~~~~~~~~~ 471 (922)
..|.-+.+..++.++.+.++
T Consensus 542 ~~g~~en~~~~~~ra~ktl~ 561 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRAMKTLQ 561 (568)
T ss_pred cCCCcccccHHHHHHHHhhC
Confidence 88888888888888776443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.018 Score=60.17 Aligned_cols=427 Identities=12% Similarity=0.044 Sum_probs=230.0
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
++++.+.+-.+|.+++-.+.++++....|--+.+|......-...+++.....+|.+++...-+ .+.|......-.+.+
T Consensus 45 ~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~lYl~YIRr~n 123 (660)
T COG5107 45 YFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWMLYLEYIRRVN 123 (660)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHHHHHHHHHhhC
Confidence 5788889999999999999999999888877888877776677778999999999998875433 344433322222221
Q ss_pred ---------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Q 002431 82 ---------DIDLAIRYYLVAIELRPNFADAWSNLASAYM---------RKGRLNEAAQCCRQALALNPLLVD-AHSNLG 142 (922)
Q Consensus 82 ---------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la 142 (922)
..-+|.+..-...-.+|.....|...+..+. ++.+.+.-...|.+++..--.+.+ .|...-
T Consensus 124 ~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~ 203 (660)
T COG5107 124 NLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYE 203 (660)
T ss_pred cccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHH
Confidence 1223333332333346766667766665543 234455666777777765333322 121111
Q ss_pred HHHH---------HcC----CHHHHHHHHHHHHhh-------CCCcHH-----------HHHHHHHHHHHcC-----C-H
Q 002431 143 NLMK---------AQG----LVQEAYSCYLEALRI-------QPTFAI-----------AWSNLAGLFMESG-----D-L 185 (922)
Q Consensus 143 ~~~~---------~~g----~~~~A~~~~~~al~~-------~p~~~~-----------~~~~la~~~~~~g-----~-~ 185 (922)
..-. -.| -+-.|...+++...+ +|-+.. -|.+....-...| + .
T Consensus 204 ~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~ 283 (660)
T COG5107 204 NFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPH 283 (660)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcH
Confidence 1111 111 134455555554433 121111 1222222221111 1 1
Q ss_pred -HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHh
Q 002431 186 -NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIG 264 (922)
Q Consensus 186 -~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 264 (922)
..-.-.+++++...+-.+++|+.....+...++-+.|+...+......|. ....++..|...++-+....+|+++..
T Consensus 284 ~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps--L~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 284 EQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS--LTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc--hheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 11222344455555555666666666666666666666666666555554 333444555555555544455554432
Q ss_pred cCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhh
Q 002431 265 CDPRFLEAYNNLGNALKD---VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPF 341 (922)
Q Consensus 265 ~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 341 (922)
.- ..-+..+..-.. .|+++...+++-+-.. ...-++..+...-.+..-.+.|..+|-++-+..-....+|
T Consensus 362 ~L----~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vy 434 (660)
T COG5107 362 DL----KRKYSMGESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVY 434 (660)
T ss_pred HH----HHHHhhhhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCccee
Confidence 00 000001110000 1222222222111111 1223344444444455566777777777766542223333
Q ss_pred hhHHH-HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHh
Q 002431 342 NNLAV-IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM--AEAHANLASAYKD 418 (922)
Q Consensus 342 ~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~ 418 (922)
..-|. -+...|++.-|-..|+-.+...|+++......-..+...++-+.|...|+++++.-... ..+|..+...-.+
T Consensus 435 i~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~ 514 (660)
T COG5107 435 IYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESM 514 (660)
T ss_pred eeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHh
Confidence 22222 24467788888888888888888887777777777778888888888888777643222 4456666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 002431 419 SGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 419 ~g~~~~A~~~~~~al~~~p~ 438 (922)
-|+...+..+=+++.+..|.
T Consensus 515 ~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 515 VGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred hcchHHHHhHHHHHHHHcCc
Confidence 67777777666666666665
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0012 Score=63.12 Aligned_cols=195 Identities=14% Similarity=0.142 Sum_probs=99.8
Q ss_pred hHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhH
Q 002431 237 IAFGNLASTYYERGQADMAILYYKQAIGCDPRFL------EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310 (922)
Q Consensus 237 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 310 (922)
..|...+.+|...+++++|...+.++.+...++. .++-..+....+...+.++..+++++.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs------------- 98 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS------------- 98 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------
Confidence 3444445555556666666666666653332221 123333444444445555555555543
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHH
Q 002431 311 GNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA------ADGLVNRGNTYKE 384 (922)
Q Consensus 311 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~ 384 (922)
..|.+.|..+.|...++++-+. .+..+.++|+++|++++.+-..+ .+.+-..+.++.+
T Consensus 99 -~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 99 -ELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred -HHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 3445555555555555444321 23345566666666655542211 2234445566666
Q ss_pred hCCHHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHhhcccC
Q 002431 385 IGRVTDAIQDYIRAITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL----RPDFPEATCNLLHTLQCVC 454 (922)
Q Consensus 385 ~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~ 454 (922)
..++++|...+.+-... .++....+.....+|.-..++..|..+|+..-+. .|++..+..+|+..|- .|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cC
Confidence 66666666655554322 2333344555555666666777777777766554 3445555666655553 35
Q ss_pred ChhhHhH
Q 002431 455 SWEDRDR 461 (922)
Q Consensus 455 ~~~~a~~ 461 (922)
+.++..+
T Consensus 242 D~E~~~k 248 (308)
T KOG1585|consen 242 DIEEIKK 248 (308)
T ss_pred CHHHHHH
Confidence 5555443
|
|
| >PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00021 Score=76.73 Aligned_cols=106 Identities=19% Similarity=0.196 Sum_probs=73.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
+..++++++..... +++ ++++..|+..++++|.+.. . .. .+.|.+.+.. ..++..++..||
T Consensus 192 ~~~iLv~~gg~~~~-----~~~-~~l~~~~~~~~~v~g~~~~-~----------~~-~~ni~~~~~~-~~~~~~~m~~ad 252 (318)
T PF13528_consen 192 EPKILVYFGGGGPG-----DLI-EALKALPDYQFIVFGPNAA-D----------PR-PGNIHVRPFS-TPDFAELMAAAD 252 (318)
T ss_pred CCEEEEEeCCCcHH-----HHH-HHHHhCCCCeEEEEcCCcc-c----------cc-CCCEEEeecC-hHHHHHHHHhCC
Confidence 44567777755433 333 4567788878877765421 1 11 4778888763 256677788899
Q ss_pred EEecCCCCCChhHHHHHHHcCCCeeeecCCc-chhhhHHHHHHhcCCCC
Q 002431 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEK-MATRVAGSLCLATGLGE 839 (922)
Q Consensus 792 v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~-~~~r~~~~~~~~~g~~~ 839 (922)
+++. -+|.+|+.||+++|+|+|+.+-+. .....-+..+..+|+..
T Consensus 253 ~vIs---~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~ 298 (318)
T PF13528_consen 253 LVIS---KGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGI 298 (318)
T ss_pred EEEE---CCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeE
Confidence 9984 356778999999999999998754 44555678888888876
|
|
| >COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00027 Score=73.14 Aligned_cols=163 Identities=19% Similarity=0.237 Sum_probs=102.8
Q ss_pred CCCCCcCCCCCCCCcEEEEec-C-CC---CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceE
Q 002431 699 NCQPKRSDYGLPEDKFIFACF-N-QL---YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQII 773 (922)
Q Consensus 699 ~~~~~r~~~~l~~~~~~~~~~-~-~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~ 773 (922)
.+...|+++|++.+..+++.+ + |. .+..+-++++..++..+.|+.++++--..+. .++++..+.......-.++
T Consensus 174 ~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~-~~~~~~~~~~~~~~~~~~~ 252 (381)
T COG0763 174 DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAK-YRRIIEEALKWEVAGLSLI 252 (381)
T ss_pred cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHH-HHHHHHHHhhccccCceEE
Confidence 334589999999887666543 2 22 3778899999999888999999988655544 3455555544333111233
Q ss_pred EcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeee-ecCCcchhhhHHHHH--HhcCCCCccccC------
Q 002431 774 FTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMIT-LPLEKMATRVAGSLC--LATGLGEEMIVN------ 844 (922)
Q Consensus 774 f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~-~~~~~~~~r~~~~~~--~~~g~~~~~i~~------ 844 (922)
+.+ .+-...+..||+.| -..||.++|++.+|+|.|. ..-..+...+.--.+ ...+||- ++++
T Consensus 253 ~~~----~~~~~a~~~aD~al----~aSGT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpN-Ii~~~~ivPE 323 (381)
T COG0763 253 LID----GEKRKAFAAADAAL----AASGTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPN-ILAGREIVPE 323 (381)
T ss_pred ecC----chHHHHHHHhhHHH----HhccHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchH-HhcCCccchH
Confidence 333 23344567799988 4568999999999999764 443333222222111 1124544 3332
Q ss_pred ------CHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002431 845 ------SMKEYEERAVSLALDRQKLQALTNKLK 871 (922)
Q Consensus 845 ------~~~~~~~~~~~l~~d~~~~~~~~~~~~ 871 (922)
.++...+....|..|...++++.+..+
T Consensus 324 liq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~ 356 (381)
T COG0763 324 LIQEDCTPENLARALEELLLNGDRREALKEKFR 356 (381)
T ss_pred HHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHH
Confidence 577888888888888866666665443
|
|
| >PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00012 Score=78.88 Aligned_cols=145 Identities=11% Similarity=0.103 Sum_probs=85.0
Q ss_pred CcCCCCCCCCcEEEEecCCC---CCCCHHHHHHHHHHHhhCCCeEEEE-ecCChhhHHHHHHHHHHcCCCCCceEEcCCC
Q 002431 703 KRSDYGLPEDKFIFACFNQL---YKMDPEIFNTWCNILRRVPNSALWL-LRFPAAGEMRLRAYAVAQGVQPDQIIFTDVA 778 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~~-~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~ 778 (922)
.+..+|++++.+++..++-. ..++..+.+++..+. ++.+++. .|.... .+.+. . . ..+...++.
T Consensus 175 ~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~---~~~~vv~~~G~~~~-~~~~~----~--~--~~~~~~~f~ 242 (352)
T PRK12446 175 GLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL---LKYQIVHLCGKGNL-DDSLQ----N--K--EGYRQFEYV 242 (352)
T ss_pred HHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc---cCcEEEEEeCCchH-HHHHh----h--c--CCcEEecch
Confidence 45667887766555444322 233333344444432 2244433 343211 22221 1 1 122333542
Q ss_pred CcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCc----chhhhHHHHHHhcCCCCccccC---CHHHHHH
Q 002431 779 MKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEK----MATRVAGSLCLATGLGEEMIVN---SMKEYEE 851 (922)
Q Consensus 779 ~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~----~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~ 851 (922)
.++...+|..+|+++ .-.|++|+.|++++|+|.|..+-.. .....-+..+...|... .+.. +++...+
T Consensus 243 -~~~m~~~~~~adlvI---sr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~-~l~~~~~~~~~l~~ 317 (352)
T PRK12446 243 -HGELPDILAITDFVI---SRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYAS-VLYEEDVTVNSLIK 317 (352)
T ss_pred -hhhHHHHHHhCCEEE---ECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEE-EcchhcCCHHHHHH
Confidence 134556789999998 2457999999999999999886432 23445566777788765 4432 5788888
Q ss_pred HHHHHhcCHHHHH
Q 002431 852 RAVSLALDRQKLQ 864 (922)
Q Consensus 852 ~~~~l~~d~~~~~ 864 (922)
.+.++.+|++.++
T Consensus 318 ~l~~ll~~~~~~~ 330 (352)
T PRK12446 318 HVEELSHNNEKYK 330 (352)
T ss_pred HHHHHHcCHHHHH
Confidence 8899998987764
|
|
| >PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00039 Score=72.97 Aligned_cols=276 Identities=14% Similarity=0.140 Sum_probs=149.8
Q ss_pred CCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCC--C-----------HHHHHHHHHhC
Q 002431 545 DFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM--S-----------SDMIAKLINED 611 (922)
Q Consensus 545 ~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~i~~~ 611 (922)
|..+.+.-+|+.++++.+.+.+.||.+.+-.. +...+-++...-.+..+..- + ..++.+.+++.
T Consensus 6 Di~~p~hvhfFk~~I~eL~~~GheV~it~R~~---~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~ 82 (335)
T PF04007_consen 6 DITHPAHVHFFKNIIRELEKRGHEVLITARDK---DETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKF 82 (335)
T ss_pred ECCCchHHHHHHHHHHHHHhCCCEEEEEEecc---chHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455666899999999999999999887432 23455566665555544321 1 25688899999
Q ss_pred CCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCcc----CCCcc--ceeecCCcc-c
Q 002431 612 KIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYA----HIYSE--KLVHVPHCY-F 684 (922)
Q Consensus 612 ~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~----~~~~e--~~~~lp~~~-~ 684 (922)
++||+|.. +.. .-..+......|+.+.. -.+.+.....+-+-++|.++.|.... ..+.. ++.+-++.. +
T Consensus 83 ~pDv~is~--~s~-~a~~va~~lgiP~I~f~-D~e~a~~~~~Lt~Pla~~i~~P~~~~~~~~~~~G~~~~i~~y~G~~E~ 158 (335)
T PF04007_consen 83 KPDVAISF--GSP-EAARVAFGLGIPSIVFN-DTEHAIAQNRLTLPLADVIITPEAIPKEFLKRFGAKNQIRTYNGYKEL 158 (335)
T ss_pred CCCEEEec--CcH-HHHHHHHHhCCCeEEEe-cCchhhccceeehhcCCeeECCcccCHHHHHhcCCcCCEEEECCeeeE
Confidence 99999722 211 11112222335655432 22222222233333667777775432 11222 344344421 1
Q ss_pred cCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC----CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHH
Q 002431 685 VNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL----YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRA 760 (922)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~----~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~ 760 (922)
.+-+ ++ .|. +....++|++++.+++..+... .+.+..++.-..+.++...+..+++...++. . .
T Consensus 159 ayl~----~F--~Pd-~~vl~~lg~~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~-~----~ 226 (335)
T PF04007_consen 159 AYLH----PF--KPD-PEVLKELGLDDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQ-R----E 226 (335)
T ss_pred Eeec----CC--CCC-hhHHHHcCCCCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcch-h----h
Confidence 1111 11 121 3467789987666666555432 2334444443344455555554444333221 2 2
Q ss_pred HHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeee-ecCCcchhhhHHHHHHhcCCCC
Q 002431 761 YAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMIT-LPLEKMATRVAGSLCLATGLGE 839 (922)
Q Consensus 761 ~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~-~~~~~~~~r~~~~~~~~~g~~~ 839 (922)
.+++.+ +.+.+. ..+.+.++.-+|+++ .+|||.+.||-.+|+|+|. .+|..+. |. ..|...|+ =
T Consensus 227 ~~~~~~-----~~i~~~--~vd~~~Ll~~a~l~I----g~ggTMa~EAA~LGtPaIs~~~g~~~~--vd-~~L~~~Gl-l 291 (335)
T PF04007_consen 227 LFEKYG-----VIIPPE--PVDGLDLLYYADLVI----GGGGTMAREAALLGTPAISCFPGKLLA--VD-KYLIEKGL-L 291 (335)
T ss_pred HHhccC-----ccccCC--CCCHHHHHHhcCEEE----eCCcHHHHHHHHhCCCEEEecCCcchh--HH-HHHHHCCC-e
Confidence 223222 444443 234444556689988 7889999999999999996 4444221 22 44566677 2
Q ss_pred ccccCCHHHHHHHHHH
Q 002431 840 EMIVNSMKEYEERAVS 855 (922)
Q Consensus 840 ~~i~~~~~~~~~~~~~ 855 (922)
+-..|+++.+..+.+
T Consensus 292 -~~~~~~~ei~~~v~~ 306 (335)
T PF04007_consen 292 -YHSTDPDEIVEYVRK 306 (335)
T ss_pred -EecCCHHHHHHHHHH
Confidence 456788887774444
|
They are found in archaea and some bacteria and have no known function. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.1e-05 Score=78.43 Aligned_cols=68 Identities=29% Similarity=0.316 Sum_probs=52.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002431 63 EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADA---WSNLASAYMRKGRLNEAAQCCRQALAL 130 (922)
Q Consensus 63 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~ 130 (922)
+|+++..++++|.+|...|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+..++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46677778888888888888888888888888888877643 778888888888888888888887775
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.1e-05 Score=69.98 Aligned_cols=92 Identities=26% Similarity=0.319 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC----
Q 002431 355 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIG----------RVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG---- 420 (922)
Q Consensus 355 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---- 420 (922)
+.|.+.++.....+|.+++.+++-|.++..+. .+++|+.-|++++.++|+..++++.+|.+|...+
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 33444444444444444444444444443331 2344555556666666666666666666655543
Q ss_pred -------CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002431 421 -------HVEAAIKSYKQALLLRPDFPEATCNL 446 (922)
Q Consensus 421 -------~~~~A~~~~~~al~~~p~~~~~~~~l 446 (922)
.+++|..+|+++.+.+|++......|
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 26788889999999999987555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.1e-06 Score=66.39 Aligned_cols=64 Identities=31% Similarity=0.514 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC----CC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002431 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIR----PT---MAEAHANLASAYKDSGHVEAAIKSYKQALLL 435 (922)
Q Consensus 372 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 435 (922)
..++.++|.+|..+|++++|+..|++++++. ++ ...++.++|.++...|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4456666777777777777777777666541 11 2456777777777777777777777777764
|
... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.072 Score=62.33 Aligned_cols=422 Identities=15% Similarity=0.084 Sum_probs=218.9
Q ss_pred hhhHHHHHH-HcCCHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---c-HHHH
Q 002431 2 HMALAHQMY-KSGSYKQALEHSNSVYERNPLR------TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR---F-AECY 70 (922)
Q Consensus 2 ~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~-~~~~ 70 (922)
++.+|..++ ...++++|...+++++.....+ ..+.+.++.++.+.+... |+..+++.++.... . ....
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence 678888888 7799999999999997655321 334566788888888777 99999999877544 1 2222
Q ss_pred HHH--HHHHHHcCCHHHHHHHHHHHHhcC--CCcHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------
Q 002431 71 GNM--ANAWKEKGDIDLAIRYYLVAIELR--PNFADA----WSNLASAYMRKGRLNEAAQCCRQALALNP---------- 132 (922)
Q Consensus 71 ~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~g~~~~A~~~~~~~l~~~p---------- 132 (922)
+.+ ...+...+++..|++.++...... ..++.+ ....+.+....+..+++++.++++.....
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 222 333333479999999999988764 343332 23335556667878888888887744321
Q ss_pred CCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHh---hCCCcH--------------------------------------
Q 002431 133 LLVDAHSNLGNL--MKAQGLVQEAYSCYLEALR---IQPTFA-------------------------------------- 169 (922)
Q Consensus 133 ~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~---~~p~~~-------------------------------------- 169 (922)
....++..+..+ ....|+++.+...+++.-+ ...+..
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~ 300 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELY 300 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHH
Confidence 123344444443 4456776666665544332 111100
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--ChhHHHhHHHHH
Q 002431 170 -IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP--NAIAFGNLASTY 246 (922)
Q Consensus 170 -~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~l~~~~ 246 (922)
-.+..-+...+..+..++|.++++++++.-.+.. ..........+..+..-..... ........+...
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~---------~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~ 371 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK---------IKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCN 371 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh---------ccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 0111112223333333344444444433110000 0000000000000000000000 012233455566
Q ss_pred HHcCChHHHHHHHHHHHhc---CCC------cHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhhCCCChH---H
Q 002431 247 YERGQADMAILYYKQAIGC---DPR------FLEAYNNLGNALKDVGRVDEAIQCYN--------QCLSLQPSHPQ---A 306 (922)
Q Consensus 247 ~~~g~~~~A~~~~~~~l~~---~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~--------~al~~~p~~~~---~ 306 (922)
+-.+++..|....+.+.+. .|. .+..++..|..+...|+.+.|...|. .+....+.+.- +
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 6677777777777666533 111 24456677777777788888888876 22233333221 3
Q ss_pred HHhHHHHHHHcCChhH----HHHHHHHHHhcCCCCchhhhhHHH-----HHH--HcCCHHHHHHHHHHHHccC-C-----
Q 002431 307 LTNLGNIYMEWNMLPA----AASYYKATLAVTTGLSAPFNNLAV-----IYK--QQGNYADAISCYNEVLRID-P----- 369 (922)
Q Consensus 307 ~~~la~~~~~~~~~~~----A~~~~~~a~~~~~~~~~~~~~la~-----~~~--~~g~~~~A~~~~~~al~~~-p----- 369 (922)
..++..++...+.-.. +...++..-....+.+..++..+. ++. ..-...++...+.++++.. .
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 3344444444443222 444444333322222211211111 111 1122335555555554433 1
Q ss_pred -CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC---cHH-HH-----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 002431 370 -LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT---MAE-AH-----ANLASAYKDSGHVEAAIKSYKQALL 434 (922)
Q Consensus 370 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~-~~-----~~la~~~~~~g~~~~A~~~~~~al~ 434 (922)
--.-++..++..++ .|+..+..+....+...... ... .| ..+...+...|+.++|.....+.-.
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 11235566666666 78888877777777665322 222 23 2455668889999999998887654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0011 Score=70.25 Aligned_cols=121 Identities=13% Similarity=0.119 Sum_probs=66.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------------------
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF------------------ 66 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------------ 66 (922)
+.....+..+.++-++.-.++++.+|+.+.++..++.-. .....+|.++|+++++.....
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~ 251 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH 251 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence 344556677888888888888888888888887776432 233566777777766542210
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 67 -------AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN--FADAWSNLASAYMRKGRLNEAAQCCRQA 127 (922)
Q Consensus 67 -------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~ 127 (922)
..+...+|.|..+.|+.++|++.++.+++..|. +..+..++..++...+.|.++..++.+.
T Consensus 252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 122233444444444444444444444444332 2234444444444444444444444443
|
The molecular function of this protein is uncertain. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00097 Score=63.21 Aligned_cols=188 Identities=17% Similarity=0.190 Sum_probs=112.2
Q ss_pred HHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhc-----C-CCcHHHHHHHHHHHHHcCCHH
Q 002431 214 KALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGC-----D-PRFLEAYNNLGNALKDVGRVD 287 (922)
Q Consensus 214 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~-p~~~~~~~~l~~~~~~~g~~~ 287 (922)
.-.+++++|.++|.++-.. |-..++++.|=..|.++.+. + .+...+|...+.+|.+ .+.+
T Consensus 25 gg~~k~eeAadl~~~Aan~-------------yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~ 90 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAANM-------------YKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPE 90 (288)
T ss_pred CCCcchHHHHHHHHHHHHH-------------HHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChH
Confidence 3345777887777776443 22233333333333333211 1 1122344444444443 3777
Q ss_pred HHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHc-CCHHHHHHHHHHHHc
Q 002431 288 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ-GNYADAISCYNEVLR 366 (922)
Q Consensus 288 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 366 (922)
+|..++++++++ |...|++..|.++ +..+|.+|... .++++|+.+|+++-+
T Consensus 91 eAv~cL~~aieI--------------yt~~Grf~~aAk~--------------~~~iaEiyEsdl~d~ekaI~~YE~Aae 142 (288)
T KOG1586|consen 91 EAVNCLEKAIEI--------------YTDMGRFTMAAKH--------------HIEIAEIYESDLQDFEKAIAHYEQAAE 142 (288)
T ss_pred HHHHHHHHHHHH--------------HHhhhHHHHHHhh--------------hhhHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 777777776653 3344444443333 23455555543 677888888887766
Q ss_pred cCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002431 367 IDPL------AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA-------EAHANLASAYKDSGHVEAAIKSYKQAL 433 (922)
Q Consensus 367 ~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al 433 (922)
.... ....+...+..-..+++|.+|+..|++.....-++. ..+..-|.|+.-..+.-.+...+++..
T Consensus 143 ~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~ 222 (288)
T KOG1586|consen 143 YYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQ 222 (288)
T ss_pred HHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHH
Confidence 4321 123556667777788899999999998877654443 234556667777788888999999999
Q ss_pred hcCCCCHHHH
Q 002431 434 LLRPDFPEAT 443 (922)
Q Consensus 434 ~~~p~~~~~~ 443 (922)
+++|...+..
T Consensus 223 ~~dP~F~dsR 232 (288)
T KOG1586|consen 223 ELDPAFTDSR 232 (288)
T ss_pred hcCCcccccH
Confidence 9999887664
|
|
| >PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00031 Score=74.79 Aligned_cols=157 Identities=16% Similarity=0.175 Sum_probs=102.0
Q ss_pred CcCCCCCCCCcEEEEec-C-CC---CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCC
Q 002431 703 KRSDYGLPEDKFIFACF-N-QL---YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~-~-~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
.++.+ ++++..+++-+ + |. .++.|.++++..++.++.|+.++++...+....+.++......+.. -.+.+..
T Consensus 175 ~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~-~~~~~~~- 251 (373)
T PF02684_consen 175 AREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPD-VSIVIIE- 251 (373)
T ss_pred HHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCC-CeEEEcC-
Confidence 45556 77777766643 2 33 2667999999999999999999988766555344466666666553 2333321
Q ss_pred CCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeee-cCCcchhhhHHHHHH--hcCCCCcccc-----------
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITL-PLEKMATRVAGSLCL--ATGLGEEMIV----------- 843 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~-~~~~~~~r~~~~~~~--~~g~~~~~i~----------- 843 (922)
.+-...++.+|+.| -..||.|+|+..+|+|.|.. ....+--.++--+++ ..||+- +++
T Consensus 252 ---~~~~~~m~~ad~al----~~SGTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~N-iia~~~v~PEliQ~ 323 (373)
T PF02684_consen 252 ---GESYDAMAAADAAL----AASGTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPN-IIAGREVVPELIQE 323 (373)
T ss_pred ---CchHHHHHhCcchh----hcCCHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechh-hhcCCCcchhhhcc
Confidence 22344567799988 55689999999999997744 443333333333221 125555 443
Q ss_pred -CCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002431 844 -NSMKEYEERAVSLALDRQKLQALTNKL 870 (922)
Q Consensus 844 -~~~~~~~~~~~~l~~d~~~~~~~~~~~ 870 (922)
-+++...+.+..+..|++.+.......
T Consensus 324 ~~~~~~i~~~~~~ll~~~~~~~~~~~~~ 351 (373)
T PF02684_consen 324 DATPENIAAELLELLENPEKRKKQKELF 351 (373)
T ss_pred cCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 278888899999999987755444433
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00086 Score=66.82 Aligned_cols=157 Identities=14% Similarity=0.072 Sum_probs=117.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhc-CCCC---chhhhhHHHHHHHcC
Q 002431 277 GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV-TTGL---SAPFNNLAVIYKQQG 352 (922)
Q Consensus 277 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~la~~~~~~g 352 (922)
+.++...|+..+|...+++.++..|.+.-++..--.+++..|+...-...+++.+.. +++. ....-.++..+.+.|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 445566777788888888888888888777777777778888888888888877766 4443 334445677788888
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHhcCCHHHHHHH
Q 002431 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM----AEAHANLASAYKDSGHVEAAIKS 428 (922)
Q Consensus 353 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~ 428 (922)
-|++|.+.-++++++++.+.-+....+.++...|++.++.+...+.-..-... ..-|...+.++...+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999999999999888888888888888999998888776654321111 22355677788888999999999
Q ss_pred HHHHH
Q 002431 429 YKQAL 433 (922)
Q Consensus 429 ~~~al 433 (922)
|.+-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 87654
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0041 Score=59.09 Aligned_cols=123 Identities=13% Similarity=0.137 Sum_probs=64.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVD------AHSNLGNLMKAQ-GLVQEAYSCYLEALRIQPTF------AIAWSNLAGLF 179 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~ 179 (922)
+.++.++|..++++++++..+... .+..+|.+|... .++++|+..|+++-+..... ...+...+..-
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 344777777777776655432221 233455555544 56666666666665542211 12233444445
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002431 180 MESGDLNRALQYYKEAVKLKPTFPD-------AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235 (922)
Q Consensus 180 ~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 235 (922)
...++|.+|+..|++.....-++.- .++.-|.++....+.-.+...+++..+.+|.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 5566666666666666554333321 2334444555545555555566666666664
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00022 Score=74.07 Aligned_cols=136 Identities=15% Similarity=0.068 Sum_probs=89.6
Q ss_pred HHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHH-cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 002431 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ-QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 384 (922)
Q Consensus 306 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 384 (922)
+|..+.....+.+..+.|..+|+++.+..+....+|...|.+... .++.+.|.++|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 344444555555556666666666664444455666666666555 4455557777777777777777777777777777
Q ss_pred hCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 385 IGRVTDAIQDYIRAITIRPTMA---EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (922)
Q Consensus 385 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (922)
.|+.+.|..+|++++..-|... .+|......-.+.|+.+....+.+++.+..|+...
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 7777777777777777655543 57777888888888999889999898888887443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.099 Score=66.15 Aligned_cols=149 Identities=17% Similarity=0.117 Sum_probs=102.0
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHh-hCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYE-RNPLR--TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEK 80 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~-~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 80 (922)
.+|.+-++.+.|.+|+-++++-.. ..+.+ ...++.+-.+|...++++.-...... ....| ............
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~----sl~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADP----SLYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCc----cHHHHHHHHHhh
Confidence 578888999999999999998411 11111 23344455588889998877666553 11222 244555667788
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCCHHHHHHH
Q 002431 81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLG-NLMKAQGLVQEAYSC 157 (922)
Q Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la-~~~~~~g~~~~A~~~ 157 (922)
|++..|..+|+++++.+|+....+...-......|.++..+...+-.....++..+-++.++ .+..+.++++.-...
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 99999999999999999998888888888888888888888877766655555555444443 333556666655444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.001 Score=63.55 Aligned_cols=166 Identities=13% Similarity=0.152 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh------HHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhH
Q 002431 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP------QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 344 (922)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 344 (922)
..|..-+.++...+++++|..++.++.+-..++. .++-..+.+..+...+.++..+|+++.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs------------- 98 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS------------- 98 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------
Confidence 3556667788888899999999988886544332 233444444555555555555555543
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHh
Q 002431 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM------AEAHANLASAYKD 418 (922)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~ 418 (922)
..|.+.|..+.|-..++++-+ ..+..+.++|++.|++++..-..+ .+.+...+.++.+
T Consensus 99 -~lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 99 -ELYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred -HHHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 456666666666666665543 234457788888888887763222 3456677889999
Q ss_pred cCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHhhcccCChhhHhHHHHH
Q 002431 419 SGHVEAAIKSYKQALLL------RPDFPEATCNLLHTLQCVCSWEDRDRMFSE 465 (922)
Q Consensus 419 ~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 465 (922)
..++++|-..+.+-... .++.-..+...+..+....++..+++.++.
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 99999998887765443 344445566666777776777777776665
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0072 Score=60.53 Aligned_cols=156 Identities=15% Similarity=0.016 Sum_probs=111.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCc---HHHHHHHHHHHHHcC
Q 002431 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-QPTF---AIAWSNLAGLFMESG 183 (922)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g 183 (922)
+......|+..+|....+++++..|.+.-++..--..+...|+...-...+++++.. +++. ..+...++-.+.+.|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 344556778888888888888888887777777777777788887777777777765 4444 444556667777788
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----hhHHHhHHHHHHHcCChHHHHHH
Q 002431 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQADMAILY 258 (922)
Q Consensus 184 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~ 258 (922)
-+++|.+..++++++++.+.-+...++.++...|+.+++.+...+.-..-.. ...|...+..+.+.+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 8888888888888888888778888888888888888888777655432111 23344556666777777888777
Q ss_pred HHHHH
Q 002431 259 YKQAI 263 (922)
Q Consensus 259 ~~~~l 263 (922)
|..-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 76654
|
|
| >PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00039 Score=77.29 Aligned_cols=158 Identities=14% Similarity=0.084 Sum_probs=97.6
Q ss_pred CCcCCCCCCCCcEEEEec-C-CC---CCCCHHHHHHHH--HHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCce-E
Q 002431 702 PKRSDYGLPEDKFIFACF-N-QL---YKMDPEIFNTWC--NILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQI-I 773 (922)
Q Consensus 702 ~~r~~~~l~~~~~~~~~~-~-~~---~K~~~~~~~~~~--~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv-~ 773 (922)
..|+++|++++..+++-+ + |. .++.|.++++.. ++. ++.++++...++..++.+++.....++ -.+ +
T Consensus 402 ~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~---~~l~fvvp~a~~~~~~~i~~~~~~~~~--~~~~i 476 (608)
T PRK01021 402 SWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLA---STHQLLVSSANPKYDHLILEVLQQEGC--LHSHI 476 (608)
T ss_pred HHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc---cCeEEEEecCchhhHHHHHHHHhhcCC--CCeEE
Confidence 368889998666666533 3 22 266788888776 322 246666644443334566666654332 012 2
Q ss_pred EcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeee-ecCCcchhhhHHHHHHh----cC----------CC
Q 002431 774 FTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMIT-LPLEKMATRVAGSLCLA----TG----------LG 838 (922)
Q Consensus 774 f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~-~~~~~~~~r~~~~~~~~----~g----------~~ 838 (922)
+.+. +-...++.||+.| -..||.|+|++.+|+|.|+ .....+.-.++--+++. +| .|
T Consensus 477 i~~~----~~~~~m~aaD~aL----aaSGTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvP 548 (608)
T PRK01021 477 VPSQ----FRYELMRECDCAL----AKCGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFP 548 (608)
T ss_pred ecCc----chHHHHHhcCeee----ecCCHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcch
Confidence 2232 1246678899998 5568999999999999775 44433333344333331 22 35
Q ss_pred Cccc----cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002431 839 EEMI----VNSMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (922)
Q Consensus 839 ~~~i----~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~ 874 (922)
| ++ .-+++..++. +++..|++.++++++.+++..
T Consensus 549 E-llqgQ~~~tpe~La~~-l~lL~d~~~r~~~~~~l~~lr 586 (608)
T PRK01021 549 E-FIGGKKDFQPEEVAAA-LDILKTSQSKEKQKDACRDLY 586 (608)
T ss_pred h-hcCCcccCCHHHHHHH-HHHhcCHHHHHHHHHHHHHHH
Confidence 6 77 3468887776 699999998888888776643
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0017 Score=69.58 Aligned_cols=108 Identities=18% Similarity=0.220 Sum_probs=95.0
Q ss_pred HHHHH-HHcCChhHHHHHHHHHHhcCCCCc-hhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCC
Q 002431 310 LGNIY-MEWNMLPAAASYYKATLAVTTGLS-APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR 387 (922)
Q Consensus 310 la~~~-~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 387 (922)
++-+| ...|+...|..++..++...|... ....+++.++.+.|-...|-.++.+++.++...+-.++.+|..+..+.+
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence 33344 457999999999999999888644 4578999999999999999999999999998889999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 002431 388 VTDAIQDYIRAITIRPTMAEAHANLASAYK 417 (922)
Q Consensus 388 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 417 (922)
.+.|++.|+.|++++|++++.-..|-.+-+
T Consensus 692 i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999999988877766655
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00012 Score=66.91 Aligned_cols=87 Identities=26% Similarity=0.455 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--
Q 002431 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHD----------YDMCIARNEEALRLEPRFAECYGNMANAWKEKGD-- 82 (922)
Q Consensus 15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 82 (922)
|+.|.+.++.....+|.+++.++.-|.++..+.+ +++|+.-|++++.++|+...++..+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6788889999899999999999988888876643 4566777777777778777777777777765542
Q ss_pred ---------HHHHHHHHHHHHhcCCCcH
Q 002431 83 ---------IDLAIRYYLVAIELRPNFA 101 (922)
Q Consensus 83 ---------~~~A~~~~~~al~~~p~~~ 101 (922)
|++|..+|+++...+|++.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 4445555555555555543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.3e-05 Score=65.12 Aligned_cols=64 Identities=33% Similarity=0.628 Sum_probs=44.9
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHcc----CC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 002431 338 SAPFNNLAVIYKQQGNYADAISCYNEVLRI----DP---LAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401 (922)
Q Consensus 338 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 401 (922)
..++.++|.+|..+|++++|+.+|++++++ .+ ....++.++|.++..+|++++|++.+++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345667777777777777777777777654 11 22457778888888888888888888888764
|
... |
| >PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00058 Score=77.11 Aligned_cols=180 Identities=13% Similarity=0.181 Sum_probs=116.9
Q ss_pred cEEEEecCCCC---CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccC
Q 002431 713 KFIFACFNQLY---KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 789 (922)
Q Consensus 713 ~~~~~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~ 789 (922)
.+||.+++... +..++.++...+.+++.|.-.+|-.+.+ . .. .++ +++|.+.+++|..+.++ ...
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~-~-~~--------~~~-p~Nv~i~~w~Pq~~lL~-hp~ 364 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGE-V-EA--------INL-PANVLTQKWFPQRAVLK-HKN 364 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCC-c-Cc--------ccC-CCceEEecCCCHHHHhc-CCC
Confidence 47788887654 4567888888888888886444544322 1 11 245 68999999999888773 356
Q ss_pred CcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHH
Q 002431 790 ADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQAL 866 (922)
Q Consensus 790 ~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~~ 866 (922)
+++|+ .++|..|+.||+++|||+|.++--.=.-+. +..+...|... .+. -+.++..+++.++.+|+..++..
T Consensus 365 v~~fI---tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~N-a~rv~~~G~G~-~l~~~~~t~~~l~~ai~~vl~~~~y~~~a 439 (507)
T PHA03392 365 VKAFV---TQGGVQSTDEAIDALVPMVGLPMMGDQFYN-TNKYVELGIGR-ALDTVTVSAAQLVLAIVDVIENPKYRKNL 439 (507)
T ss_pred CCEEE---ecCCcccHHHHHHcCCCEEECCCCccHHHH-HHHHHHcCcEE-EeccCCcCHHHHHHHHHHHhCCHHHHHHH
Confidence 88887 467789999999999999998754322222 34455667654 332 27788999999999998877765
Q ss_pred HHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCCC
Q 002431 867 TNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHCSGQKPQHFKVTENDLD 917 (922)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~~~~~ 917 (922)
++-. +.....|.--.++.+..+|.+. |+ ++...|+.....+|.
T Consensus 440 ~~ls-~~~~~~p~~~~~~av~~iE~v~-----r~--~~g~~~lr~~~~~l~ 482 (507)
T PHA03392 440 KELR-HLIRHQPMTPLHKAIWYTEHVI-----RN--KHGNTSLKTKAANVS 482 (507)
T ss_pred HHHH-HHHHhCCCCHHHHHHHHHHHHH-----hC--CCCcccccccccCCC
Confidence 4433 3333344434566666666543 11 124455555555554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.001 Score=70.61 Aligned_cols=191 Identities=16% Similarity=0.133 Sum_probs=125.5
Q ss_pred hHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCCh
Q 002431 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320 (922)
Q Consensus 241 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 320 (922)
.+..-..+..+.+.-++.-+++++++|+..++|..++.-. .....+|.++++++++...... .........|..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~ 246 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHF 246 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccch
Confidence 3444455667788888888889999998888887776532 3356788888888877542211 000000111110
Q ss_pred hHHHHHHHHHHhcCCC--CchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002431 321 PAAASYYKATLAVTTG--LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL--AADGLVNRGNTYKEIGRVTDAIQDYI 396 (922)
Q Consensus 321 ~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 396 (922)
- ........ ...+...++.+..+.|+.++|++.++.+++.+|. +..+..++..++..++.+.++...+.
T Consensus 247 ~-------e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 247 W-------EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred h-------hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 0 01111111 1334567899999999999999999999988764 45688899999999999999999888
Q ss_pred HHHhh-CCCcHHHHHHHHHHHHh-cCC---------------HHHHHHHHHHHHhcCCCCHHHHH
Q 002431 397 RAITI-RPTMAEAHANLASAYKD-SGH---------------VEAAIKSYKQALLLRPDFPEATC 444 (922)
Q Consensus 397 ~al~~-~p~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~ 444 (922)
+--+. -|..+...+.-+..-.+ .++ -..|.+...++++.+|.-+..+.
T Consensus 320 kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 320 KYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 86544 26666666665554433 222 23477899999999998776543
|
The molecular function of this protein is uncertain. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00048 Score=71.51 Aligned_cols=128 Identities=15% Similarity=0.105 Sum_probs=51.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002431 73 MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR-KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLV 151 (922)
Q Consensus 73 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 151 (922)
+.....+.+..+.|..+|.++.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+...|+.
T Consensus 7 ~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~ 86 (280)
T PF05843_consen 7 YMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDI 86 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcH
Confidence 33333333444444444444443333333444444444333 22333344444444444444444444444444444444
Q ss_pred HHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002431 152 QEAYSCYLEALRIQPTFA---IAWSNLAGLFMESGDLNRALQYYKEAVKLKP 200 (922)
Q Consensus 152 ~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 200 (922)
+.|..+|++++..-+... ..|......-.+.|+.+...++.+++.+..|
T Consensus 87 ~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 87 NNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 444444444444333222 2333333434444444444444444444333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN02670 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00053 Score=75.99 Aligned_cols=174 Identities=13% Similarity=0.120 Sum_probs=107.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhh-H---HHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG-E---MRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 787 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-~---~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~ 787 (922)
..+||.||+......+.-++..+.-+...|...||.+..++.. . ..+-.-+.+. +....+++.++.|..+.+.-
T Consensus 278 ~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~-~~~rG~vv~~W~PQ~~IL~H- 355 (472)
T PLN02670 278 NSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEER-VKGRGMIHVGWVPQVKILSH- 355 (472)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHh-ccCCCeEEeCcCCHHHHhcC-
Confidence 4589999998888899999999988999999889988642110 1 1121122221 11122677899998887732
Q ss_pred cCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc-------CCHHHHHHHHHHHhcCH
Q 002431 788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-------NSMKEYEERAVSLALDR 860 (922)
Q Consensus 788 ~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~-------~~~~~~~~~~~~l~~d~ 860 (922)
..+..|| .+.|-+|++||+++|||+|+++--.= -...+..+...|+.- -+. -+.++..+++.+++.|+
T Consensus 356 ~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~D-Q~~Na~~v~~~g~Gv-~l~~~~~~~~~~~e~i~~av~~vm~~~ 430 (472)
T PLN02670 356 ESVGGFL---THCGWNSVVEGLGFGRVLILFPVLNE-QGLNTRLLHGKKLGL-EVPRDERDGSFTSDSVAESVRLAMVDD 430 (472)
T ss_pred cccceee---ecCCcchHHHHHHcCCCEEeCcchhc-cHHHHHHHHHcCeeE-EeeccccCCcCcHHHHHHHHHHHhcCc
Confidence 3344465 46779999999999999999873211 122233444456654 221 25778888888888775
Q ss_pred ---HHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 861 ---QKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 861 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
+.+++ .+++++.. ...-...+.++.+++.+..
T Consensus 431 ~g~~~r~~-a~~l~~~~--~~~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 431 AGEEIRDK-AKEMRNLF--GDMDRNNRYVDELVHYLRE 465 (472)
T ss_pred chHHHHHH-HHHHHHHH--hCcchhHHHHHHHHHHHHH
Confidence 23332 22233332 1224556666666665544
|
|
| >TIGR02094 more_P_ylases alpha-glucan phosphorylases | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00059 Score=77.88 Aligned_cols=174 Identities=16% Similarity=0.157 Sum_probs=111.3
Q ss_pred CCCCcEEEEecCCC--CCCCHHHHHHHHHHHh--hC--CCeEEEEecCChhh-------HHHHHHHHHHcCCCCCceEEc
Q 002431 709 LPEDKFIFACFNQL--YKMDPEIFNTWCNILR--RV--PNSALWLLRFPAAG-------EMRLRAYAVAQGVQPDQIIFT 775 (922)
Q Consensus 709 l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~--~~--p~~~l~~~~~~~~~-------~~~l~~~~~~~g~~~~rv~f~ 775 (922)
+.++.+++|.+.|+ +|..+-++....++++ .. .+..+++.|.+... ...+...+++-.+ ++||.|.
T Consensus 385 ~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~-~~kv~f~ 463 (601)
T TIGR02094 385 LDPDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEF-RGRIVFL 463 (601)
T ss_pred cCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccC-CCCEEEE
Confidence 44567888888887 5999999998888875 32 34788888876432 3344554444345 5799997
Q ss_pred CCCCcHHHHHhccCCcEEec-CCC-CCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---------
Q 002431 776 DVAMKQEHIRRSSLADLFLD-TPL-CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--------- 843 (922)
Q Consensus 776 ~~~~~~~~~~~~~~~dv~l~-~~~-~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--------- 843 (922)
.--+..---.++..+||+|. |+. +|. ||+-+=||.-|.+.+|.-.....+-.. |-+++.+.
T Consensus 464 ~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~~-------~~nGf~f~~~~~~~~~~ 536 (601)
T TIGR02094 464 ENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGYD-------GDNGWAIGDGEEYDDEE 536 (601)
T ss_pred cCCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccCC-------CCcEEEECCCccccccc
Confidence 63222211224899999999 775 888 999999999999999765422222111 22331222
Q ss_pred ----CCHHHHHHHH---H-HHhcC------H-HHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 844 ----NSMKEYEERA---V-SLALD------R-QKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 844 ----~~~~~~~~~~---~-~l~~d------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
.|.+++.+++ + .+-.+ | .+.+.+++.++.. .|.||+.+++++..+.|
T Consensus 537 ~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~---~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 537 EQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATI---APRFSTNRMVREYVDKF 598 (601)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhcc---CCCCCHHHHHHHHHHHh
Confidence 3555555544 2 33322 2 2455555555443 45799999999988876
|
This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0051 Score=68.76 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCC----CchhhhhHHHHHHHcCCHHHHHHH
Q 002431 285 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG----LSAPFNNLAVIYKQQGNYADAISC 360 (922)
Q Consensus 285 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~ 360 (922)
+.+.|.++++...+..|+..-..+..|.++...|+.++|++.|++++..... ....++.++.++.-+.++++|.++
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 3344444444444444444444444444444444444444444444422111 122356677777777777777777
Q ss_pred HHHHHccCCCC-HHHHHHHHHHHHHhCCH-------HHHHHHHHHHHhh
Q 002431 361 YNEVLRIDPLA-ADGLVNRGNTYKEIGRV-------TDAIQDYIRAITI 401 (922)
Q Consensus 361 ~~~al~~~p~~-~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~ 401 (922)
+.++.+.+.-+ ....+..|.++...|+. ++|.+.|.++-..
T Consensus 328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 328 FLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 77777755432 23444557777777777 7777777776654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.072 Score=58.70 Aligned_cols=248 Identities=17% Similarity=0.066 Sum_probs=147.3
Q ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---------HHHHHHHHHHHHHcCCHH
Q 002431 14 SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---------AECYGNMANAWKEKGDID 84 (922)
Q Consensus 14 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~ 84 (922)
..++|+++. +.+| ++..|..++......-.++-|...|-+.-.. +.- ..--...+.+-.--|+++
T Consensus 678 gledA~qfi----EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 678 GLEDAIQFI----EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred chHHHHHHH----hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 344454433 3455 6888999998888887888887777654221 110 000123344445568888
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN--PLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162 (922)
Q Consensus 85 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (922)
+|.+.|-.+-.. -.....+.+.|++-...++++..-.-. ....+++..+|..+.....+++|.++|...-
T Consensus 752 eaek~yld~drr--------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 752 EAEKLYLDADRR--------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred Hhhhhhhccchh--------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888654321 122455667777776666555421111 1123578888888888888999888887643
Q ss_pred hhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhH
Q 002431 163 RIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL 242 (922)
Q Consensus 163 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l 242 (922)
. ..+++.+++...+|++-..+ ...-|++...+-.++.++...|.-++|.+.|-+.-. |.. .
T Consensus 824 ~--------~e~~~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~--pka-----A 884 (1189)
T KOG2041|consen 824 D--------TENQIECLYRLELFGELEVL----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL--PKA-----A 884 (1189)
T ss_pred c--------hHhHHHHHHHHHhhhhHHHH----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC--cHH-----H
Confidence 2 23566777777777664433 334577777888888999999998888888765421 221 1
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 243 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQC 296 (922)
Q Consensus 243 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 296 (922)
...+...++|.+|.++.++.. -|.-.......+.-+...++..+|++..+++
T Consensus 885 v~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 223445567777777665431 1222222223344445556666666666554
|
|
| >PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00097 Score=73.90 Aligned_cols=141 Identities=15% Similarity=0.142 Sum_probs=93.2
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCCh----hhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPA----AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 787 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~----~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~ 787 (922)
+.+||.||+...+.....++..+.-|+..+...||.+..+. ...+.+-.-+.+. + .+|....++.|..+.+.-
T Consensus 264 ~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er-~-~~~g~v~~w~PQ~~iL~h- 340 (451)
T PLN02410 264 NSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKI-I-SGRGYIVKWAPQKEVLSH- 340 (451)
T ss_pred CcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHh-c-cCCeEEEccCCHHHHhCC-
Confidence 46999999998899988888888888888888899886331 1011123233322 4 477777899998887742
Q ss_pred cCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhc-CCCCccc--cCCHHHHHHHHHHHhcCH
Q 002431 788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLAT-GLGEEMI--VNSMKEYEERAVSLALDR 860 (922)
Q Consensus 788 ~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~-g~~~~~i--~~~~~~~~~~~~~l~~d~ 860 (922)
..+..|+ .+.|-+|++||+++|||+|+++--.- ...-+..+... |+.- -+ .-+.++..+.+.++..|+
T Consensus 341 ~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~D-Q~~na~~~~~~~~~G~-~~~~~~~~~~v~~av~~lm~~~ 411 (451)
T PLN02410 341 PAVGGFW---SHCGWNSTLESIGEGVPMICKPFSSD-QKVNARYLECVWKIGI-QVEGDLDRGAVERAVKRLMVEE 411 (451)
T ss_pred CccCeee---ecCchhHHHHHHHcCCCEEecccccc-CHHHHHHHHHHhCeeE-EeCCcccHHHHHHHHHHHHcCC
Confidence 4455566 46778999999999999999874311 12222222221 3332 11 126778888888888775
|
|
| >PLN03004 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00078 Score=74.34 Aligned_cols=143 Identities=17% Similarity=0.222 Sum_probs=94.5
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh-------hHHHHHHHHHHcCCCCCceEEcCCCCcHHHH
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-------GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHI 784 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-------~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~ 784 (922)
+.+||.||+......+..++..+.-+...+...||.+..+.. ....+-.-+.+. +....|+..++.|..+.+
T Consensus 270 ~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er-~~~~g~~v~~W~PQ~~iL 348 (451)
T PLN03004 270 KSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSR-TEDKGMVVKSWAPQVPVL 348 (451)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHh-ccCCcEEEEeeCCHHHHh
Confidence 458999999888889999999999999999989999874311 011121122222 223468888999988877
Q ss_pred HhccCCcE--EecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHH-hcCCCCcccc------CCHHHHHHHHHH
Q 002431 785 RRSSLADL--FLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCL-ATGLGEEMIV------NSMKEYEERAVS 855 (922)
Q Consensus 785 ~~~~~~dv--~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~-~~g~~~~~i~------~~~~~~~~~~~~ 855 (922)
...+| || .+.|-+|++||+++|||+|+++--.- -...+..+. ..|+.- -+. -+.++..+.+.+
T Consensus 349 ---~H~~v~~Fv---TH~G~nS~lEal~~GVP~v~~P~~~D-Q~~na~~~~~~~g~g~-~l~~~~~~~~~~e~l~~av~~ 420 (451)
T PLN03004 349 ---NHKAVGGFV---THCGWNSILEAVCAGVPMVAWPLYAE-QRFNRVMIVDEIKIAI-SMNESETGFVSSTEVEKRVQE 420 (451)
T ss_pred ---CCCccceEe---ccCcchHHHHHHHcCCCEEecccccc-chhhHHHHHHHhCceE-EecCCcCCccCHHHHHHHHHH
Confidence 34555 65 46778999999999999999874211 112223332 335543 221 266788888888
Q ss_pred HhcCHHHH
Q 002431 856 LALDRQKL 863 (922)
Q Consensus 856 l~~d~~~~ 863 (922)
++.|+..+
T Consensus 421 vm~~~~~r 428 (451)
T PLN03004 421 IIGECPVR 428 (451)
T ss_pred HhcCHHHH
Confidence 88775543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.068 Score=56.33 Aligned_cols=129 Identities=9% Similarity=0.024 Sum_probs=105.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 002431 7 HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLA 86 (922)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 86 (922)
......|+...|-.-+..++...|.++......+.+...+|+|+.+...+..+-+.-..-..+...+.......|++++|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34567799999999999999999999999999999999999999999988776555444455666677778889999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002431 87 IRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV 135 (922)
Q Consensus 87 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 135 (922)
...-.-++...-++++.....+-.....|-++++...+++.+.++|...
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 9999888877666777776666677788889999999999998887533
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.002 Score=63.97 Aligned_cols=161 Identities=18% Similarity=0.131 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF-ADAWSNLASAY 111 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 111 (922)
.+.-+..+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-...... ..........+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 34445555666677777777777777777777777777777777777777777777766543322221 11111112333
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ--PTFAIAWSNLAGLFMESGDLNRAL 189 (922)
Q Consensus 112 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~ 189 (922)
.+.....+.. .+++-+..+|++.++.+.++..+...|+.++|.+.+-..++.+ -.+..+...+..++...|.-+.+.
T Consensus 214 ~qaa~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 214 EQAAATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred HHHhcCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 3333332222 2344455677777777777777777777777777777776653 234455666666666666544444
Q ss_pred HHHHH
Q 002431 190 QYYKE 194 (922)
Q Consensus 190 ~~~~~ 194 (922)
..+++
T Consensus 293 ~~~RR 297 (304)
T COG3118 293 LAYRR 297 (304)
T ss_pred HHHHH
Confidence 44433
|
|
| >PLN02992 coniferyl-alcohol glucosyltransferase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0013 Score=73.01 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=97.9
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh----------------h--HHHHHHHHHHcCCCCCceE
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA----------------G--EMRLRAYAVAQGVQPDQII 773 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~----------------~--~~~l~~~~~~~g~~~~rv~ 773 (922)
+.+||.||+........-++..+.-++..|...||.+..+.. . .+.+-+-+.+. +....++
T Consensus 263 ~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR-~~~rg~v 341 (481)
T PLN02992 263 ESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSR-THDRGFV 341 (481)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHH-hcCCCEE
Confidence 458999999888889999999999999999999999842110 0 01111112111 2223478
Q ss_pred EcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHH-HhcCCCCcccc-----CCHH
Q 002431 774 FTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMIV-----NSMK 847 (922)
Q Consensus 774 f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~-~~~g~~~~~i~-----~~~~ 847 (922)
+.++.|..+.+.- ..+..|+ .+.|.+|++||+++|||+|+++--.=.-. -+..+ ..+|+.- .+. -+.+
T Consensus 342 v~~W~PQ~~iL~h-~~vg~Fi---tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~-na~~~~~~~g~gv-~~~~~~~~~~~~ 415 (481)
T PLN02992 342 VPSWAPQAEILAH-QAVGGFL---THCGWSSTLESVVGGVPMIAWPLFAEQNM-NAALLSDELGIAV-RSDDPKEVISRS 415 (481)
T ss_pred EeecCCHHHHhCC-cccCeeE---ecCchhHHHHHHHcCCCEEecCccchhHH-HHHHHHHHhCeeE-EecCCCCcccHH
Confidence 8899998887742 2223344 46779999999999999999874321111 12333 3456654 231 2667
Q ss_pred HHHHHHHHHhcCHH------HHHHHHHHHHhhc
Q 002431 848 EYEERAVSLALDRQ------KLQALTNKLKSVR 874 (922)
Q Consensus 848 ~~~~~~~~l~~d~~------~~~~~~~~~~~~~ 874 (922)
+..+++.++..+++ ..+++++..++.+
T Consensus 416 ~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av 448 (481)
T PLN02992 416 KIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSL 448 (481)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence 88888888886632 2344444554443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.02 Score=62.40 Aligned_cols=165 Identities=21% Similarity=0.275 Sum_probs=88.3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhH
Q 002431 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP----TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIA 238 (922)
Q Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~ 238 (922)
.....|...+.+..+.|+++.|...+.++....+ ..+.+....+..+...|+..+|+..++..++.... ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 4455667777777777777777777777766431 13556667777777777777777777766652111 000
Q ss_pred HHhHHHHHHH--cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCChHHHHhH
Q 002431 239 FGNLASTYYE--RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV------GRVDEAIQCYNQCLSLQPSHPQALTNL 310 (922)
Q Consensus 239 ~~~l~~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l 310 (922)
...+...... ........... .......++..+|...... +..+++...|.++.+.+|....++..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKE-----SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred HHHHhhccccccccccccchhhh-----hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 0000000000 00000000000 0001123455555555555 666777777777777777666666666
Q ss_pred HHHHHHcC-----------------ChhHHHHHHHHHHhcCCC
Q 002431 311 GNIYMEWN-----------------MLPAAASYYKATLAVTTG 336 (922)
Q Consensus 311 a~~~~~~~-----------------~~~~A~~~~~~a~~~~~~ 336 (922)
|..+.+.= -...|+..|-+++...+.
T Consensus 299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 65544321 123477788888887776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.015 Score=61.26 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002431 205 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235 (922)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 235 (922)
.+-.++.+..-.|++++|.+.+++++...|.
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 3445556666677777777777777766554
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00042 Score=65.83 Aligned_cols=93 Identities=22% Similarity=0.228 Sum_probs=67.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 38 LLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRL 117 (922)
Q Consensus 38 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 117 (922)
.-|..++...+|..|+..|.+++..+|..+..|...+.++++..+++.+.....++++++|+.+...+.+|........+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34556666667777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHh
Q 002431 118 NEAAQCCRQALAL 130 (922)
Q Consensus 118 ~~A~~~~~~~l~~ 130 (922)
++|+..+.++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 7777777777543
|
|
| >PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0024 Score=71.43 Aligned_cols=146 Identities=14% Similarity=0.176 Sum_probs=89.3
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhh---HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG---EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~---~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~ 788 (922)
..+||.+|+......+..++....-+...+...||.++.+... ...+-.-+.+. +....++..++.|..+++. ..
T Consensus 283 ~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r-~~~~g~~v~~w~PQ~~vL~-h~ 360 (477)
T PLN02863 283 HKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDR-VAGRGLVIRGWAPQVAILS-HR 360 (477)
T ss_pred CceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHH-hccCCEEecCCCCHHHHhc-CC
Confidence 3588999998878888888888888888888888888743210 11121112111 1134578889999888774 24
Q ss_pred CCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccc------cCCHHHHHHHHHHHh-cCHH
Q 002431 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI------VNSMKEYEERAVSLA-LDRQ 861 (922)
Q Consensus 789 ~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i------~~~~~~~~~~~~~l~-~d~~ 861 (922)
.+++|+ .++|-+|++||+++|||+|+++--.=.-..+.-+...+|+.- -+ .-+.++..+.+.++. .+++
T Consensus 361 ~v~~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~-~~~~~~~~~~~~~~v~~~v~~~m~~~~~ 436 (477)
T PLN02863 361 AVGAFL---THCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAV-RVCEGADTVPDSDELARVFMESVSENQV 436 (477)
T ss_pred CcCeEE---ecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeE-EeccCCCCCcCHHHHHHHHHHHhhccHH
Confidence 577777 467789999999999999998742111111111122333332 12 125567666666655 4544
Q ss_pred HH
Q 002431 862 KL 863 (922)
Q Consensus 862 ~~ 863 (922)
.+
T Consensus 437 ~r 438 (477)
T PLN02863 437 ER 438 (477)
T ss_pred HH
Confidence 44
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00045 Score=65.63 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=87.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
..+..++....|..|+..|.+++..+|..+..+...+.|+++..+++.+.....+++++.|+.....+.+|....+...|
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34667788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 002431 84 DLAIRYYLVAIEL 96 (922)
Q Consensus 84 ~~A~~~~~~al~~ 96 (922)
++|+..++++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999999665
|
|
| >COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0015 Score=67.97 Aligned_cols=306 Identities=16% Similarity=0.123 Sum_probs=184.1
Q ss_pred cceeeeecCCCCCChhHhhhhHHhhcCCCCC-eEEEEEecCCCCChHHHHHHHhccCc---eEECCCC----C-------
Q 002431 536 RLRVGYVSSDFGNHPLSHLMGSVFGMHNKEN-VEVFCYALSPNDGTEWRQRTQSEAEH---FVDVSAM----S------- 600 (922)
Q Consensus 536 ~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~------- 600 (922)
.+||..|++ .-|-..=+.++++.+++.. ||.+++.+++.-+..+-..+.....- -+++.-+ +
T Consensus 3 ~~Kv~~I~G---TRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~ 79 (383)
T COG0381 3 MLKVLTIFG---TRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGN 79 (383)
T ss_pred ceEEEEEEe---cCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHH
Confidence 467777764 4677778889999998877 99999999987754455444443331 1222222 1
Q ss_pred -HHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhcCCC----ceEEeccccCCCCCCCcccE------------EEecCcc
Q 002431 601 -SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPA----PIQVSYMGFPGTTGASYIDY------------LVTDEFV 663 (922)
Q Consensus 601 -~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~~~a----pvq~~~~g~~~t~g~~~~d~------------~~~d~~~ 663 (922)
...+.+.+.+.+||++ --||.+...|+.-.| -|.|.+.- -|+.+.|- .++|-.+
T Consensus 80 ~i~~~~~vl~~~kPD~V-----lVhGDT~t~lA~alaa~~~~IpV~HvE----AGlRt~~~~~PEE~NR~l~~~~S~~hf 150 (383)
T COG0381 80 IIEGLSKVLEEEKPDLV-----LVHGDTNTTLAGALAAFYLKIPVGHVE----AGLRTGDLYFPEEINRRLTSHLSDLHF 150 (383)
T ss_pred HHHHHHHHHHhhCCCEE-----EEeCCcchHHHHHHHHHHhCCceEEEe----cccccCCCCCcHHHHHHHHHHhhhhhc
Confidence 2457888889999998 455665544442111 22232221 23332222 2556677
Q ss_pred CCcCccCCCccceeecCCccccCCCccccc---cCCCCC--CCCCcCC-CCCCCCcEEEEecCCCC---CCCHHHHHHHH
Q 002431 664 SPLRYAHIYSEKLVHVPHCYFVNDYKQKNM---DVLDPN--CQPKRSD-YGLPEDKFIFACFNQLY---KMDPEIFNTWC 734 (922)
Q Consensus 664 ~~~~~~~~~~e~~~~lp~~~~~~~~~~~~~---~~~~~~--~~~~r~~-~~l~~~~~~~~~~~~~~---K~~~~~~~~~~ 734 (922)
+|.+...-+..+- ..|...+...++.... ...... ....... ++.+++.++..++.|.. +....++.+..
T Consensus 151 apte~ar~nLl~E-G~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~~~~~iLvT~HRreN~~~~~~~i~~al~ 229 (383)
T COG0381 151 APTEIARKNLLRE-GVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDKDKKYILVTAHRRENVGEPLEEICEALR 229 (383)
T ss_pred CChHHHHHHHHHc-CCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhccccCcEEEEEcchhhcccccHHHHHHHHH
Confidence 7766422111110 1122212111111000 000000 0011111 45555567788887653 77788899999
Q ss_pred HHHhhCCCeEEEEecCChhhHHHHHHHH-HHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCC
Q 002431 735 NILRRVPNSALWLLRFPAAGEMRLRAYA-VAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGL 813 (922)
Q Consensus 735 ~il~~~p~~~l~~~~~~~~~~~~l~~~~-~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~ 813 (922)
+|++..|+..++.--.. +.+++... ..++- .+||.+...+...++..++..+-+.| ...|.--=||-..|+
T Consensus 230 ~i~~~~~~~~viyp~H~---~~~v~e~~~~~L~~-~~~v~li~pl~~~~f~~L~~~a~~il----tDSGgiqEEAp~lg~ 301 (383)
T COG0381 230 EIAEEYPDVIVIYPVHP---RPRVRELVLKRLKN-VERVKLIDPLGYLDFHNLMKNAFLIL----TDSGGIQEEAPSLGK 301 (383)
T ss_pred HHHHhCCCceEEEeCCC---ChhhhHHHHHHhCC-CCcEEEeCCcchHHHHHHHHhceEEE----ecCCchhhhHHhcCC
Confidence 99999988777654322 23444433 55565 47899999888999999888886665 333555679999999
Q ss_pred CeeeecCC-cchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 002431 814 PMITLPLE-KMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNK 869 (922)
Q Consensus 814 Pvv~~~~~-~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~ 869 (922)
||+++... ..+++|.+ |-.- +|-.+.+..++.+..+.+|++..++|+..
T Consensus 302 Pvl~lR~~TERPE~v~a------gt~~-lvg~~~~~i~~~~~~ll~~~~~~~~m~~~ 351 (383)
T COG0381 302 PVLVLRDTTERPEGVEA------GTNI-LVGTDEENILDAATELLEDEEFYERMSNA 351 (383)
T ss_pred cEEeeccCCCCccceec------CceE-EeCccHHHHHHHHHHHhhChHHHHHHhcc
Confidence 99988654 33455554 4444 66678899999999999999988877663
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.014 Score=65.33 Aligned_cols=177 Identities=11% Similarity=0.015 Sum_probs=126.2
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-hHH------HHhHHHHHH----HcCChhHHHHH
Q 002431 258 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH-PQA------LTNLGNIYM----EWNMLPAAASY 326 (922)
Q Consensus 258 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~------~~~la~~~~----~~~~~~~A~~~ 326 (922)
.|.-++.+-|. ....+....--.|+-+.+++.+.++.+...-. +-+ |+.....+. .....+.|.++
T Consensus 179 ~f~L~lSlLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~l 255 (468)
T PF10300_consen 179 LFNLVLSLLPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEEL 255 (468)
T ss_pred HHHHHHHhCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHH
Confidence 34444444443 22334444444567777777777766522111 111 111111111 34567889999
Q ss_pred HHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 002431 327 YKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA----ADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 402 (922)
Q Consensus 327 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 402 (922)
++...+..|+........|.++...|+.++|++.|++++.....- .-.++.+++++.-+.+|++|...+.+..+.+
T Consensus 256 L~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 256 LEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999988543222 3378889999999999999999999999976
Q ss_pred CCc-HHHHHHHHHHHHhcCCH-------HHHHHHHHHHHhcCC
Q 002431 403 PTM-AEAHANLASAYKDSGHV-------EAAIKSYKQALLLRP 437 (922)
Q Consensus 403 p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~p 437 (922)
.-. ....+..|.++...|+. ++|.++|+++-.+..
T Consensus 336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 554 34456678888899999 999999999877643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00087 Score=67.25 Aligned_cols=125 Identities=15% Similarity=0.169 Sum_probs=101.6
Q ss_pred hCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEE-cCCCCcHHHHHhccCCcEE--ecCCCCCC--hhHHHHHHHcCC
Q 002431 739 RVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIF-TDVAMKQEHIRRSSLADLF--LDTPLCNA--HTTGTDILWAGL 813 (922)
Q Consensus 739 ~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f-~~~~~~~~~~~~~~~~dv~--l~~~~~~g--~~t~~eal~~g~ 813 (922)
..|+...+|-|.||. ++...+.+.++.+ .+|.| +++..-+++...+..+|+- |.||..+= ++-++|-.-||+
T Consensus 290 ~lP~llciITGKGPl-kE~Y~~~I~~~~~--~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcgl 366 (444)
T KOG2941|consen 290 NLPSLLCIITGKGPL-KEKYSQEIHEKNL--QHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGL 366 (444)
T ss_pred CCCcEEEEEcCCCch-hHHHHHHHHHhcc--cceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCC
Confidence 367777777888998 8888999999887 56666 5577789999999999965 56655544 889999999999
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc----CHHHHHHHHHHHHhh
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL----DRQKLQALTNKLKSV 873 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~----d~~~~~~~~~~~~~~ 873 (922)
||++..=....+-|- -|.++ ++..|.++..+....|.+ +.+.+.+++.++++.
T Consensus 367 PvcA~~fkcl~ELVk------h~eNG-lvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~ 423 (444)
T KOG2941|consen 367 PVCAVNFKCLDELVK------HGENG-LVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLREE 423 (444)
T ss_pred ceeeecchhHHHHHh------cCCCc-eEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Confidence 999877655544333 28888 999999999999999998 899999999999885
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.014 Score=56.74 Aligned_cols=226 Identities=16% Similarity=0.191 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHH
Q 002431 50 DMCIARNEEALRLEPRFAECYGNMANAWKEKG-DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN-EAAQCCRQA 127 (922)
Q Consensus 50 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~ 127 (922)
..|+++-+.++..+|.+-.+|...-.++...+ +..+-++++..+++.+|++-++|...-.+....|+.. .-++..+.+
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM 139 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 44555556666677776666655555554433 4566667777777777777777776666666666666 666777777
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHhcCCC
Q 002431 128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME-SG-----DLNRALQYYKEAVKLKPT 201 (922)
Q Consensus 128 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~~l~~~p~ 201 (922)
+..+.++..+|...-.+...-+.++.-+.+..++++.+-.+-.+|+..--+... .| ..+.-+.+..+.+...|+
T Consensus 140 l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~ 219 (318)
T KOG0530|consen 140 LDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN 219 (318)
T ss_pred HhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence 777777777777777777777777777777777777665555555443221111 11 123345566666777777
Q ss_pred CHHHHHHHHHHHHH-cC--ChHHHHHHHHHHHhhCCC--hhHHHhHHHHHH------HcCChH---HHHHHHHHHH-hcC
Q 002431 202 FPDAYLNLGNVYKA-LG--MPQEAIMCYQRAVQTRPN--AIAFGNLASTYY------ERGQAD---MAILYYKQAI-GCD 266 (922)
Q Consensus 202 ~~~~~~~l~~~~~~-~g--~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~------~~g~~~---~A~~~~~~~l-~~~ 266 (922)
+..+|..|.-++.. .| ...+............|. +..+..+...|. ..+.-+ +|.+.++.+. +.+
T Consensus 220 NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~D 299 (318)
T KOG0530|consen 220 NESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVD 299 (318)
T ss_pred CccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccC
Confidence 77777777666664 33 233444444444322121 334444444441 122222 4666666655 566
Q ss_pred CCcHHHHHH
Q 002431 267 PRFLEAYNN 275 (922)
Q Consensus 267 p~~~~~~~~ 275 (922)
|-....|..
T Consensus 300 piR~nyW~~ 308 (318)
T KOG0530|consen 300 PIRKNYWRH 308 (318)
T ss_pred cHHHHHHHH
Confidence 655544433
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.069 Score=63.77 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=76.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhc----C---CHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQL----H---DYDMCIARNEEALRLEPRFAECYGNMA 74 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la 74 (922)
.-.++...+.|++|+..|+++....|.. .++.+..|.....+ | .+++|+..|++. ...|.-+--|...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence 3456778889999999999999888754 56777777766543 2 467777777764 44566677888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 002431 75 NAWKEKGDIDLAIRYYLVAIELRPNFADAW 104 (922)
Q Consensus 75 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 104 (922)
.+|.+.|++++-++.|.-+++..|+.+..-
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 899999999999999999999888876543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00016 Score=50.79 Aligned_cols=38 Identities=39% Similarity=0.491 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002431 409 HANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (922)
Q Consensus 409 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (922)
+..+|..|...|++++|++.|+++++.+|+++.++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 34444444444444444444444444444444444433
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0012 Score=63.02 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=82.1
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHc--------cCCCCH----------HHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLR--------IDPLAA----------DGLVNRGNTYKEIGRVTDAIQDYIRAITIR 402 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~--------~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 402 (922)
+..-|+-+++.|+|++|...|..++. ..|..+ ..+.+++.|+...|+|-++++.....+...
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 44455556666666666666665543 234433 368889999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 403 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 403 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
|.+..+++..|.+....=+.++|.+-|.++++++|.-..+.
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 99999999999999999999999999999999998755443
|
|
| >PLN02764 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0015 Score=71.85 Aligned_cols=155 Identities=9% Similarity=0.057 Sum_probs=91.3
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh---hHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc
Q 002431 711 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA---GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 787 (922)
Q Consensus 711 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~---~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~ 787 (922)
++.++|.||+....+.+.-+.-.+.=|...-.-.+|++..+.. ....|-.-+.+. +...-++..++.|..+.+. .
T Consensus 256 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r-~~grG~v~~~W~PQ~~vL~-h 333 (453)
T PLN02764 256 PDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEER-VKGRGVVWGGWVQQPLILS-H 333 (453)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhh-hccCCcEEeCCCCHHHHhc-C
Confidence 3558999999887765554444443344444446788764211 011122222222 1112367789999888884 3
Q ss_pred cCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHH-HhcCCCCccc------cCCHHHHHHHHHHHhcCH
Q 002431 788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMI------VNSMKEYEERAVSLALDR 860 (922)
Q Consensus 788 ~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~-~~~g~~~~~i------~~~~~~~~~~~~~l~~d~ 860 (922)
..++.|| .+.|.+|++||+++|||+|+++--.-. ..-+..+ ..+|+.- -+ .-+.++..+++.+++.+.
T Consensus 334 ~~v~~Fv---tH~G~nS~~Eal~~GVP~l~~P~~~DQ-~~na~~l~~~~g~gv-~~~~~~~~~~~~e~i~~av~~vm~~~ 408 (453)
T PLN02764 334 PSVGCFV---SHCGFGSMWESLLSDCQIVLVPQLGDQ-VLNTRLLSDELKVSV-EVAREETGWFSKESLRDAINSVMKRD 408 (453)
T ss_pred cccCeEE---ecCCchHHHHHHHcCCCEEeCCcccch-HHHHHHHHHHhceEE-EeccccCCccCHHHHHHHHHHHhcCC
Confidence 4566676 467799999999999999998753211 1222333 3344432 11 126788888888888764
Q ss_pred -HHHHHHHHHHHh
Q 002431 861 -QKLQALTNKLKS 872 (922)
Q Consensus 861 -~~~~~~~~~~~~ 872 (922)
+..+.+|++.++
T Consensus 409 ~~~g~~~r~~a~~ 421 (453)
T PLN02764 409 SEIGNLVKKNHTK 421 (453)
T ss_pred chhHHHHHHHHHH
Confidence 445555555544
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00012 Score=77.04 Aligned_cols=105 Identities=23% Similarity=0.255 Sum_probs=61.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 002431 40 GAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNE 119 (922)
Q Consensus 40 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 119 (922)
+...+.-+.++.|+..|.++++++|+.+..+-..+.++.+.+++..|+..+.++++.+|....+|+..|.+....+++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 34445555556666666666666665555555555556666666666666666666666655566666666666666666
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Q 002431 120 AAQCCRQALALNPLLVDAHSNLGNL 144 (922)
Q Consensus 120 A~~~~~~~l~~~p~~~~~~~~la~~ 144 (922)
|...|++.....|+++.+...+-.+
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 6666666666666655554444433
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.13 Score=65.05 Aligned_cols=386 Identities=15% Similarity=0.097 Sum_probs=204.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002431 38 LLGAIYYQLHDYDMCIARNEEALRLEPR----FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113 (922)
Q Consensus 38 ~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 113 (922)
.++.+-++.+.|..|+-++++- ...+. ....+..+-.+|...++++.-.-.... ...+|+ ..........
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s----l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS----LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc----HHHHHHHHHh
Confidence 6788889999999999999985 22221 123344455588999998887776654 122332 3455666778
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH-HHHHHcCCHHHHHHHH
Q 002431 114 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA-GLFMESGDLNRALQYY 192 (922)
Q Consensus 114 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~ 192 (922)
.|++..|..+|+++++.+|+....+...-......+.++..+...+-.....++...-|+.++ .+..+.++++.-.+..
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 899999999999999999998888888888888889998888877776666565555555543 3345666666655554
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHH-----HHHHHHHHHh-------hCCC-hhHHHhHHHHHHHcCChHHHHHHH
Q 002431 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQE-----AIMCYQRAVQ-------TRPN-AIAFGNLASTYYERGQADMAILYY 259 (922)
Q Consensus 193 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~-----A~~~~~~~~~-------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 259 (922)
. ..+-.+..+.. +|.+.....+-+. .++..+...- ...+ ...|..+...+... +.+...+.+
T Consensus 1542 ~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l 1616 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEEL 1616 (2382)
T ss_pred h---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 3 11111111211 3444433322211 1111111100 0000 11111111111110 011111111
Q ss_pred HHHHhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hC----CCChHHHHhHHHHHHHcCChhHHHHHH
Q 002431 260 KQAIGCDPR-----FLEAYNNLGNALKDVGRVDEAIQCYNQCLS---LQ----PSHPQALTNLGNIYMEWNMLPAAASYY 327 (922)
Q Consensus 260 ~~~l~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~----p~~~~~~~~la~~~~~~~~~~~A~~~~ 327 (922)
.+ ..++ +.+-|.+....-....+..+-+-.+++..- .+ ..-.+.|...|++....|.++.|...+
T Consensus 1617 ~~---~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1617 KK---VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred hc---cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 11 1111 011222222111111122233333333221 12 123456777777777777777777776
Q ss_pred HHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC--------H---------HHHHHHHHHHHHhCCH--
Q 002431 328 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA--------A---------DGLVNRGNTYKEIGRV-- 388 (922)
Q Consensus 328 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------~---------~~~~~l~~~~~~~g~~-- 388 (922)
-++.+.. -+.++...|..+..+|+-..|+..+++.++.+-.+ + .+.+.++.-....|+.
T Consensus 1694 l~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s 1771 (2382)
T KOG0890|consen 1694 LNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFES 1771 (2382)
T ss_pred Hhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhH
Confidence 6666555 45566667777777777777777777776542111 1 1233333333344442
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHH------------HhcCCHHH---HHHHHHHHHhcCCCC
Q 002431 389 TDAIQDYIRAITIRPTMAEAHANLASAY------------KDSGHVEA---AIKSYKQALLLRPDF 439 (922)
Q Consensus 389 ~~A~~~~~~al~~~p~~~~~~~~la~~~------------~~~g~~~~---A~~~~~~al~~~p~~ 439 (922)
++-++.|..+.+..|....-++.+|..| .+.|++.. ++..|.+++..+-.+
T Consensus 1772 ~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~ 1837 (2382)
T KOG0890|consen 1772 KDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQH 1837 (2382)
T ss_pred HHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchh
Confidence 3345667777777776555555555333 23445544 556666777766544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00021 Score=50.20 Aligned_cols=43 Identities=23% Similarity=0.364 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 002431 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414 (922)
Q Consensus 372 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 414 (922)
+.++..+|..|..+|++++|++.|+++++.+|+++.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578999999999999999999999999999999999999875
|
|
| >PLN02554 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0031 Score=70.99 Aligned_cols=145 Identities=21% Similarity=0.219 Sum_probs=93.1
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh-----------h-HHHHHHHHHHcCCCCCceEEcCCCC
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-----------G-EMRLRAYAVAQGVQPDQIIFTDVAM 779 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----------~-~~~l~~~~~~~g~~~~rv~f~~~~~ 779 (922)
+.+||.||+......+..++....-++..+.-.+|.++.+.. . .+.+-.-+.+. + .+|+.+.++.|
T Consensus 274 ~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r-~-~~~g~v~~W~P 351 (481)
T PLN02554 274 KSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDR-T-KDIGKVIGWAP 351 (481)
T ss_pred CcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHH-h-ccCceEEeeCC
Confidence 458999999888888888888888888888877888754210 0 01111112111 3 36777789999
Q ss_pred cHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCC--cchhhhHHHHHHhcCCCCccc--------------c
Q 002431 780 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLE--KMATRVAGSLCLATGLGEEMI--------------V 843 (922)
Q Consensus 780 ~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~--~~~~r~~~~~~~~~g~~~~~i--------------~ 843 (922)
..+.+. ...+..|| .+.|-+|++||+++|||+|+++-- .+.. ..-++..+|+.- -+ .
T Consensus 352 Q~~iL~-H~~v~~Fv---tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~N--a~~~v~~~g~Gv-~l~~~~~~~~~~~~~~~ 424 (481)
T PLN02554 352 QVAVLA-KPAIGGFV---THCGWNSILESLWFGVPMAAWPLYAEQKFN--AFEMVEELGLAV-EIRKYWRGDLLAGEMET 424 (481)
T ss_pred HHHHhC-CcccCccc---ccCccchHHHHHHcCCCEEecCccccchhh--HHHHHHHhCceE-EeeccccccccccccCe
Confidence 888773 34556665 467789999999999999998742 2211 112344455542 11 1
Q ss_pred CCHHHHHHHHHHHhc-CHHHHHH
Q 002431 844 NSMKEYEERAVSLAL-DRQKLQA 865 (922)
Q Consensus 844 ~~~~~~~~~~~~l~~-d~~~~~~ 865 (922)
-+.++..+++.++.. |+..+++
T Consensus 425 ~~~e~l~~av~~vm~~~~~~r~~ 447 (481)
T PLN02554 425 VTAEEIERGIRCLMEQDSDVRKR 447 (481)
T ss_pred EcHHHHHHHHHHHhcCCHHHHHH
Confidence 266777777777775 6555444
|
|
| >PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00076 Score=77.48 Aligned_cols=163 Identities=14% Similarity=0.253 Sum_probs=93.3
Q ss_pred CCcEEEEecCCCCCC-CHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccC
Q 002431 711 EDKFIFACFNQLYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 789 (922)
Q Consensus 711 ~~~~~~~~~~~~~K~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~ 789 (922)
++.+||.+|+...+. ....++.+.+.+++.|...+|-.+.... ..+ ++.|.+..++|..+.++ ...
T Consensus 275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~-----------~~l-~~n~~~~~W~PQ~~lL~-hp~ 341 (500)
T PF00201_consen 275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPP-----------ENL-PKNVLIVKWLPQNDLLA-HPR 341 (500)
T ss_dssp TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHG-----------CHH-HTTEEEESS--HHHHHT-STT
T ss_pred CCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccccc-----------ccc-cceEEEeccccchhhhh-ccc
Confidence 346899999987654 4445888888899999977776654211 112 46788899999888885 455
Q ss_pred CcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHH
Q 002431 790 ADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQAL 866 (922)
Q Consensus 790 ~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~~ 866 (922)
+++|+ .++|-+|+.||+++|||+|+++--.=--+ -+..+...|... .+. -+.++..+++.++.+|+..++..
T Consensus 342 v~~fi---tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~-na~~~~~~G~g~-~l~~~~~~~~~l~~ai~~vl~~~~y~~~a 416 (500)
T PF00201_consen 342 VKLFI---THGGLNSTQEALYHGVPMLGIPLFGDQPR-NAARVEEKGVGV-VLDKNDLTEEELRAAIREVLENPSYKENA 416 (500)
T ss_dssp EEEEE---ES--HHHHHHHHHCT--EEE-GCSTTHHH-HHHHHHHTTSEE-EEGGGC-SHHHHHHHHHHHHHSHHHHHHH
T ss_pred ceeee---eccccchhhhhhhccCCccCCCCcccCCc-cceEEEEEeeEE-EEEecCCcHHHHHHHHHHHHhhhHHHHHH
Confidence 67776 46778999999999999999874311111 234455667754 332 26788999999999998766664
Q ss_pred HHHHHhhcccCCCCChHHHHHHHHHH
Q 002431 867 TNKLKSVRLTCPLFDTARWVKNLERS 892 (922)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~e~~ 892 (922)
++ +++.....|.--.++.+..+|-+
T Consensus 417 ~~-ls~~~~~~p~~p~~~~~~~ie~v 441 (500)
T PF00201_consen 417 KR-LSSLFRDRPISPLERAVWWIEYV 441 (500)
T ss_dssp HH-HHHTTT-----------------
T ss_pred HH-HHHHHhcCCCCHHHHHHHHHHHH
Confidence 43 44444444433344445555543
|
This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A .... |
| >PLN02167 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.003 Score=70.95 Aligned_cols=140 Identities=20% Similarity=0.230 Sum_probs=87.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhh----HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG----EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 787 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~----~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~ 787 (922)
+.+||.+|+......+..++.++.-++..+...||.++.+... ...+-.-+.+ .+ .+|+.+.++.|..+.+. .
T Consensus 280 ~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~e-r~-~~rg~v~~w~PQ~~iL~-h 356 (475)
T PLN02167 280 SSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMD-RV-MGRGLVCGWAPQVEILA-H 356 (475)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHH-Hh-ccCeeeeccCCHHHHhc-C
Confidence 4588999988777777778888888888888788887643210 1112111111 13 35667779998888774 3
Q ss_pred cCCcEEecCCCCCChhHHHHHHHcCCCeeeecCC--cchhhhHHHHHHhcCCCCccc---------cCCHHHHHHHHHHH
Q 002431 788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPLE--KMATRVAGSLCLATGLGEEMI---------VNSMKEYEERAVSL 856 (922)
Q Consensus 788 ~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~--~~~~r~~~~~~~~~g~~~~~i---------~~~~~~~~~~~~~l 856 (922)
..++.|| .++|-+|++||+++|||+|+++-- .+.. +.-++..+|..-.+- .-+.++..+.+.++
T Consensus 357 ~~vg~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n--a~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~ 431 (475)
T PLN02167 357 KAIGGFV---SHCGWNSVLESLWFGVPIATWPMYAEQQLN--AFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSL 431 (475)
T ss_pred cccCeEE---eeCCcccHHHHHHcCCCEEeccccccchhh--HHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHH
Confidence 4456666 467788999999999999988742 2221 111234445432110 12567777777787
Q ss_pred hcC
Q 002431 857 ALD 859 (922)
Q Consensus 857 ~~d 859 (922)
+.+
T Consensus 432 m~~ 434 (475)
T PLN02167 432 MDG 434 (475)
T ss_pred hcC
Confidence 754
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.15 Score=56.42 Aligned_cols=175 Identities=20% Similarity=0.183 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 002431 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPL--------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 172 (922)
Q Consensus 101 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 172 (922)
+..|..++......-.++-|...|-+.-....- ...--...+.+-.--|++++|.+.|-.+-+.
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr-------- 763 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR-------- 763 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh--------
Confidence 666666666666555555555555443211000 0000112233344456666666666443221
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcC
Q 002431 173 SNLAGLFMESGDLNRALQYYKEAVKLKP--TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERG 250 (922)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g 250 (922)
-.-..++.+.|++-...++++.--.-.. ....++.++|..+..+..+++|.++|.+.-.. .+.+.+++...
T Consensus 764 DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------e~~~ecly~le 836 (1189)
T KOG2041|consen 764 DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------ENQIECLYRLE 836 (1189)
T ss_pred hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------HhHHHHHHHHH
Confidence 1123344555565555554443211111 11236666666666666666666666554221 23344444444
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 251 QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294 (922)
Q Consensus 251 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 294 (922)
++++-..+ ...-|++.+.+-.++..+...|.-++|.+.|-
T Consensus 837 ~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 837 LFGELEVL----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred hhhhHHHH----HHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 44433222 22234444455555666666666565555553
|
|
| >PLN02207 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0035 Score=69.51 Aligned_cols=139 Identities=17% Similarity=0.250 Sum_probs=89.7
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh-hHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
+.+||.||+.........++..+.-+...+...||.+..+.. ..+.+-.-+.+. + .+|+...++.|..+.+.- ..+
T Consensus 275 ~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er-~-~~~g~i~~W~PQ~~IL~H-~~v 351 (468)
T PLN02207 275 ASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDR-V-SGRGMICGWSPQVEILAH-KAV 351 (468)
T ss_pred CcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhh-c-CCCeEEEEeCCHHHHhcc-ccc
Confidence 458999999888999999999999999999988998874221 011111122211 3 467777799998888843 444
Q ss_pred cEEecCCCCCChhHHHHHHHcCCCeeeecC--CcchhhhHHHHHHhcCCCCcc----c-----cCCHHHHHHHHHHHhc
Q 002431 791 DLFLDTPLCNAHTTGTDILWAGLPMITLPL--EKMATRVAGSLCLATGLGEEM----I-----VNSMKEYEERAVSLAL 858 (922)
Q Consensus 791 dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~--~~~~~r~~~~~~~~~g~~~~~----i-----~~~~~~~~~~~~~l~~ 858 (922)
..|| .+.|-++++||+++|||+|+++- +.+.. ..-+....|+.-.+ . .-+.++..+++.+++.
T Consensus 352 g~Fv---TH~GwnS~~Eai~~GVP~l~~P~~~DQ~~N--a~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 352 GGFV---SHCGWNSIVESLWFGVPIVTWPMYAEQQLN--AFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred ceee---ecCccccHHHHHHcCCCEEecCccccchhh--HHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHh
Confidence 5565 46778899999999999999873 22221 11112223332100 0 1266777777777775
|
|
| >PLN02448 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0055 Score=68.72 Aligned_cols=135 Identities=16% Similarity=0.172 Sum_probs=86.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
+.+||.+|+......+..++...+-++..+...+|.+.... ..+.+. . .+++++.++.|..+.+.- ..+.
T Consensus 274 ~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~---~~~~~~-----~-~~~~~v~~w~pQ~~iL~h-~~v~ 343 (459)
T PLN02448 274 GSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEA---SRLKEI-----C-GDMGLVVPWCDQLKVLCH-SSVG 343 (459)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCch---hhHhHh-----c-cCCEEEeccCCHHHHhcc-Cccc
Confidence 44788888877777788888888888888766666544221 112111 1 367888899998887752 3333
Q ss_pred EEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHH-hcCCCCccc-------cCCHHHHHHHHHHHhcCH
Q 002431 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCL-ATGLGEEMI-------VNSMKEYEERAVSLALDR 860 (922)
Q Consensus 792 v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~-~~g~~~~~i-------~~~~~~~~~~~~~l~~d~ 860 (922)
.|| .++|.+|++||+++|||+|+++--.-.-.. +..+. .+|+.-.+. .-+.++..+.+.+++.|+
T Consensus 344 ~fv---tHgG~nS~~eal~~GvP~l~~P~~~DQ~~n-a~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 344 GFW---THCGWNSTLEAVFAGVPMLTFPLFWDQPLN-SKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLE 416 (459)
T ss_pred eEE---ecCchhHHHHHHHcCCCEEeccccccchhh-HHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCC
Confidence 465 467799999999999999998743222222 22232 223322111 126778888888888764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.025 Score=59.72 Aligned_cols=79 Identities=22% Similarity=0.136 Sum_probs=42.6
Q ss_pred hHHHhHHHHHHHcCChHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HhhCCCChHHHH
Q 002431 237 IAFGNLASTYYERGQADMAILYYKQAIGC----DPRFLEAYNNLGNALKD---VGRVDEAIQCYNQC-LSLQPSHPQALT 308 (922)
Q Consensus 237 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~~~ 308 (922)
.+..++...|....+|+.-+++.+.+-.. .++.......+|.++.+ .|+.++|+..+..+ ....+.+++++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 33444445555555565555555554433 23334445555556655 56666666666663 333445566666
Q ss_pred hHHHHHH
Q 002431 309 NLGNIYM 315 (922)
Q Consensus 309 ~la~~~~ 315 (922)
.+|.+|.
T Consensus 222 L~GRIyK 228 (374)
T PF13281_consen 222 LLGRIYK 228 (374)
T ss_pred HHHHHHH
Confidence 6666553
|
|
| >PLN02562 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0055 Score=68.17 Aligned_cols=148 Identities=14% Similarity=0.098 Sum_probs=93.2
Q ss_pred CcEEEEecCCCC-CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 712 DKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 712 ~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
+.+||.+|+... ...++.++....-++..+.-.+|.+..+. ...+-.-+.+. + .+|+.+.++.|..+.+.- ..+
T Consensus 273 ~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~--~~~l~~~~~~~-~-~~~~~v~~w~PQ~~iL~h-~~v 347 (448)
T PLN02562 273 NSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW--REGLPPGYVER-V-SKQGKVVSWAPQLEVLKH-QAV 347 (448)
T ss_pred CceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc--hhhCCHHHHHH-h-ccCEEEEecCCHHHHhCC-Ccc
Confidence 347888998754 67888999999889999987788775321 11121112111 3 478888899998888742 333
Q ss_pred cEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 002431 791 DLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALT 867 (922)
Q Consensus 791 dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~ 867 (922)
-.|| .++|-+|++||+++|||+|+++--.-.-..+.-+...+|+.-.+-.-+.++..+.+.++..|++.+++.+
T Consensus 348 ~~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r~~a~ 421 (448)
T PLN02562 348 GCYL---THCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKEVEEGLRKVMEDSGMGERLM 421 (448)
T ss_pred ceEE---ecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHHHHHHHHHHhCCHHHHHHHH
Confidence 3555 4677999999999999999886331111111111111343221112367788888888888877665543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.052 Score=62.40 Aligned_cols=145 Identities=17% Similarity=0.118 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcC---
Q 002431 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQL-----HDYDMCIARNEEALRL-----EPRFAECYGNMANAWKEKG--- 81 (922)
Q Consensus 15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--- 81 (922)
..+|...++.+.+.. +..+...+|.++..- .|.+.|+.+|+.+.+. ...++.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 455666666665433 556666666666544 4677777777776551 0113445556666665532
Q ss_pred --CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Q 002431 82 --DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG---RLNEAAQCCRQALALNPLLVDAHSNLGNLMKA----QGLVQ 152 (922)
Q Consensus 82 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~ 152 (922)
+++.|..+|.++-+.. ++.+.+.+|.++.... +...|.++|..+.+.. +..+.+.++.++.. ..+..
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHH
Confidence 4555666666655542 2344555555555433 3456666666655433 44555555555543 22455
Q ss_pred HHHHHHHHHHhhC
Q 002431 153 EAYSCYLEALRIQ 165 (922)
Q Consensus 153 ~A~~~~~~al~~~ 165 (922)
.|..++.++.+..
T Consensus 382 ~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHcc
Confidence 5555555555544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00012 Score=47.75 Aligned_cols=32 Identities=47% Similarity=0.662 Sum_probs=19.4
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHH
Q 002431 395 YIRAITIRPTMAEAHANLASAYKDSGHVEAAI 426 (922)
Q Consensus 395 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 426 (922)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566666666666666666666666666554
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.002 Score=61.52 Aligned_cols=97 Identities=22% Similarity=0.219 Sum_probs=64.9
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHh--------hCCCc----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYE--------RNPLR----------TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR 65 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~--------~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 65 (922)
+.|+.+++.|+|.+|...|..++. ..|.+ ...+....+|+...|+|-++++....++...|.
T Consensus 183 q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~ 262 (329)
T KOG0545|consen 183 QEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG 262 (329)
T ss_pred HhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc
Confidence 567788888888888888877652 23433 234455666666666666777766666666666
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002431 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF 100 (922)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 100 (922)
+..+++..|.+....=+..+|...|.++++++|.-
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 66666666666666666666666666666666653
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.034 Score=54.08 Aligned_cols=247 Identities=13% Similarity=0.081 Sum_probs=161.1
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 002431 47 HDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG-RLNEAAQCCR 125 (922)
Q Consensus 47 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~ 125 (922)
.+|.++..+|+.++..+..+ ..|+++...++.++|.+-.+|...-.++...+ +..+-++++.
T Consensus 40 e~fr~~m~YfRAI~~~~E~S-----------------~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~ 102 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKS-----------------PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLD 102 (318)
T ss_pred hhHHHHHHHHHHHHhccccC-----------------HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45677777777766655443 45666777778888887777776666655543 5677788888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 126 QALALNPLLVDAHSNLGNLMKAQGLVQ-EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 204 (922)
Q Consensus 126 ~~l~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 204 (922)
++++.+|++..+|...-.+....|+.. .-++..+.++..+..+..+|...-.+....+.++.-+.+..++++.+-.+-.
T Consensus 103 eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS 182 (318)
T KOG0530|consen 103 EIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS 182 (318)
T ss_pred HHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence 888888888888888888888888777 7778888888888888888888888888888888888888888887766666
Q ss_pred HHHHHHHHHHH-cC-----ChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHH-cC--ChHHHHHHHHHHH-hcCCCcHHHH
Q 002431 205 AYLNLGNVYKA-LG-----MPQEAIMCYQRAVQTRPN-AIAFGNLASTYYE-RG--QADMAILYYKQAI-GCDPRFLEAY 273 (922)
Q Consensus 205 ~~~~l~~~~~~-~g-----~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g--~~~~A~~~~~~~l-~~~p~~~~~~ 273 (922)
+|+..-.+... .| ..+.-+.+..+.+...|+ ..+|+.|..++.. .| ...+......... ......+..+
T Consensus 183 AWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~ll 262 (318)
T KOG0530|consen 183 AWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLL 262 (318)
T ss_pred hhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHH
Confidence 66543322222 11 123345566667777777 6777777777765 33 2333444444443 3333444444
Q ss_pred HHHHHHHH------HcCCHH---HHHHHHHHHH-hhCCCChHHHHhH
Q 002431 274 NNLGNALK------DVGRVD---EAIQCYNQCL-SLQPSHPQALTNL 310 (922)
Q Consensus 274 ~~l~~~~~------~~g~~~---~A~~~~~~al-~~~p~~~~~~~~l 310 (922)
..+...|. +.+.-+ +|.+.++.+- +.+|-....|...
T Consensus 263 a~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~~~ 309 (318)
T KOG0530|consen 263 AFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWRHK 309 (318)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 45555541 122223 5666776654 5566555544433
|
|
| >PLN00164 glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0044 Score=69.55 Aligned_cols=143 Identities=21% Similarity=0.264 Sum_probs=87.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh----------hHHHHHHHHHHcCCCCCceEEcCCCCcH
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA----------GEMRLRAYAVAQGVQPDQIIFTDVAMKQ 781 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~----------~~~~l~~~~~~~g~~~~rv~f~~~~~~~ 781 (922)
..+||.||+........-++..+.-|+..+.-.||.+..++. ....+-.-+.+. +....+++.++.|..
T Consensus 272 ~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~g~~v~~w~PQ~ 350 (480)
T PLN00164 272 ASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLER-TKGRGLVWPTWAPQK 350 (480)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHH-hcCCCeEEeecCCHH
Confidence 348899999877777777888888888888878888874321 011121111111 111236777899888
Q ss_pred HHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--------CCHHHHHHHH
Q 002431 782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--------NSMKEYEERA 853 (922)
Q Consensus 782 ~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--------~~~~~~~~~~ 853 (922)
+++.- ..+-.|| .+.|-+|++||+++|||+|+++--.=.-..+.-+...+|+.- .+. -+.++..+.+
T Consensus 351 ~iL~h-~~vg~fv---tH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~-~~~~~~~~~~~~~~e~l~~av 425 (480)
T PLN00164 351 EILAH-AAVGGFV---THCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAV-AMKVDRKRDNFVEAAELERAV 425 (480)
T ss_pred HHhcC-cccCeEE---eecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEE-EeccccccCCcCcHHHHHHHH
Confidence 87742 2233455 467789999999999999998732111111111234455543 221 1567777778
Q ss_pred HHHhcCH
Q 002431 854 VSLALDR 860 (922)
Q Consensus 854 ~~l~~d~ 860 (922)
.++..++
T Consensus 426 ~~vm~~~ 432 (480)
T PLN00164 426 RSLMGGG 432 (480)
T ss_pred HHHhcCC
Confidence 7888764
|
|
| >PLN00414 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0025 Score=70.53 Aligned_cols=150 Identities=8% Similarity=0.033 Sum_probs=89.7
Q ss_pred CCcEEEEecCCCCCCC-HHHHHHHHHHHhhCCCeEEEEecCChh--h-----HHHHHHHHHHcCCCCCceEEcCCCCcHH
Q 002431 711 EDKFIFACFNQLYKMD-PEIFNTWCNILRRVPNSALWLLRFPAA--G-----EMRLRAYAVAQGVQPDQIIFTDVAMKQE 782 (922)
Q Consensus 711 ~~~~~~~~~~~~~K~~-~~~~~~~~~il~~~p~~~l~~~~~~~~--~-----~~~l~~~~~~~g~~~~rv~f~~~~~~~~ 782 (922)
++.+||.||+...... +.+.++... |...-...||++..+.. . .+.+..+... ..+++.|+.|..+
T Consensus 251 ~~sVvyvsfGS~~~~~~~q~~e~a~g-L~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~-----~g~vv~~w~PQ~~ 324 (446)
T PLN00414 251 PGSVVFCAFGTQFFFEKDQFQEFCLG-MELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKG-----RGIVWEGWVEQPL 324 (446)
T ss_pred CCceEEEeecccccCCHHHHHHHHHH-HHHcCCCeEEEEecCCCcccchhhCChhHHHHhcC-----CCeEEeccCCHHH
Confidence 3458999999887776 455554443 33333345677754211 0 1223333322 2256778999888
Q ss_pred HHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHH-HhcCCCCcccc------CCHHHHHHHHHH
Q 002431 783 HIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMIV------NSMKEYEERAVS 855 (922)
Q Consensus 783 ~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~-~~~g~~~~~i~------~~~~~~~~~~~~ 855 (922)
.+.- ..++.|| .+.|.+|++||+++|||+|+++--.- ....+..+ ..+|+.- -+. -+.++..+.+.+
T Consensus 325 vL~h-~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~d-Q~~na~~~~~~~g~g~-~~~~~~~~~~~~~~i~~~v~~ 398 (446)
T PLN00414 325 ILSH-PSVGCFV---NHCGFGSMWESLVSDCQIVFIPQLAD-QVLITRLLTEELEVSV-KVQREDSGWFSKESLRDTVKS 398 (446)
T ss_pred HhcC-CccceEE---ecCchhHHHHHHHcCCCEEecCcccc-hHHHHHHHHHHhCeEE-EeccccCCccCHHHHHHHHHH
Confidence 8742 4456676 46779999999999999999875322 22233444 3456543 221 367788888888
Q ss_pred HhcCH-HHHHHHHHHHHh
Q 002431 856 LALDR-QKLQALTNKLKS 872 (922)
Q Consensus 856 l~~d~-~~~~~~~~~~~~ 872 (922)
++.++ +..+++|++.++
T Consensus 399 ~m~~~~e~g~~~r~~a~~ 416 (446)
T PLN00414 399 VMDKDSEIGNLVKRNHKK 416 (446)
T ss_pred HhcCChhhHHHHHHHHHH
Confidence 88654 444555555443
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00019 Score=75.74 Aligned_cols=102 Identities=23% Similarity=0.286 Sum_probs=90.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHH
Q 002431 344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423 (922)
Q Consensus 344 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 423 (922)
-+......+.++.|+..|.++++++|+.+..+.+++.++.+.+++..|+..+.++++.+|....+|+..|.++.+.+++.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 34556677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHH
Q 002431 424 AAIKSYKQALLLRPDFPEATCN 445 (922)
Q Consensus 424 ~A~~~~~~al~~~p~~~~~~~~ 445 (922)
+|...|++...+.|+.+.+...
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHH
Confidence 9999999999999998876543
|
|
| >PLN02210 UDP-glucosyl transferase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0053 Score=68.42 Aligned_cols=141 Identities=13% Similarity=0.199 Sum_probs=90.5
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
..+||.+|+...+..+..++..+.-++..+...+|.++.... .... ..+.+. +..+|....++.|..+.+.- ..+.
T Consensus 269 ~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~-~~~~-~~~~~~-~~~~~g~v~~w~PQ~~iL~h-~~vg 344 (456)
T PLN02210 269 SSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEK-AQNV-QVLQEM-VKEGQGVVLEWSPQEKILSH-MAIS 344 (456)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCcc-ccch-hhHHhh-ccCCCeEEEecCCHHHHhcC-cCcC
Confidence 348999999888889999999998899888878887764211 1111 112222 10255566789998887742 3344
Q ss_pred EEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHh-cCCCCcccc-------CCHHHHHHHHHHHhcCHH
Q 002431 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLA-TGLGEEMIV-------NSMKEYEERAVSLALDRQ 861 (922)
Q Consensus 792 v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~-~g~~~~~i~-------~~~~~~~~~~~~l~~d~~ 861 (922)
.|| .+.|-+|++||+++|||+|+++--.-. .+-+..+.. +|+.- .+. -+.++..+.+.+++.+++
T Consensus 345 ~Fi---tH~G~nS~~Eai~~GVP~v~~P~~~DQ-~~na~~~~~~~g~G~-~l~~~~~~~~~~~~~l~~av~~~m~~~~ 417 (456)
T PLN02210 345 CFV---THCGWNSTIETVVAGVPVVAYPSWTDQ-PIDARLLVDVFGIGV-RMRNDAVDGELKVEEVERCIEAVTEGPA 417 (456)
T ss_pred eEE---eeCCcccHHHHHHcCCCEEeccccccc-HHHHHHHHHHhCeEE-EEeccccCCcCCHHHHHHHHHHHhcCch
Confidence 666 467788999999999999998743211 122333333 44443 221 266788888888876643
|
|
| >PLN02173 UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0064 Score=67.21 Aligned_cols=140 Identities=14% Similarity=0.216 Sum_probs=87.3
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
+.+||.+|+......++.++..+.-+...| .+|.+..+. .+.+-+-+.+. +..+++.+.++.|..+.+. ...+.
T Consensus 264 ~svvyvsfGS~~~~~~~~~~ela~gLs~~~--flWvvr~~~--~~~lp~~~~~~-~~~~~~~i~~W~PQ~~iL~-H~~v~ 337 (449)
T PLN02173 264 GSVVYIAFGSMAKLSSEQMEEIASAISNFS--YLWVVRASE--ESKLPPGFLET-VDKDKSLVLKWSPQLQVLS-NKAIG 337 (449)
T ss_pred CceEEEEecccccCCHHHHHHHHHHhcCCC--EEEEEeccc--hhcccchHHHh-hcCCceEEeCCCCHHHHhC-CCccc
Confidence 448999999888888888888777776565 677775321 11121112111 2246788889999888774 23344
Q ss_pred EEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHh-cCCCCcccc------CCHHHHHHHHHHHhcCHH
Q 002431 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLA-TGLGEEMIV------NSMKEYEERAVSLALDRQ 861 (922)
Q Consensus 792 v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~-~g~~~~~i~------~~~~~~~~~~~~l~~d~~ 861 (922)
.|| .+.|.+|++||+++|||+|+++--.-. ..-+..+.. +|+.-.+-. -+.++..+.+.+++.+++
T Consensus 338 ~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~DQ-~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~ 410 (449)
T PLN02173 338 CFM---THCGWNSTMEGLSLGVPMVAMPQWTDQ-PMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEK 410 (449)
T ss_pred eEE---ecCccchHHHHHHcCCCEEecCchhcc-hHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCCh
Confidence 665 467799999999999999998743211 222233332 233221110 166888888888887643
|
|
| >PLN02152 indole-3-acetate beta-glucosyltransferase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.007 Score=67.00 Aligned_cols=142 Identities=13% Similarity=0.180 Sum_probs=90.5
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh--------hHHHH--HHHHHHcCCCCCceEEcCCCCcH
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA--------GEMRL--RAYAVAQGVQPDQIIFTDVAMKQ 781 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~--------~~~~l--~~~~~~~g~~~~rv~f~~~~~~~ 781 (922)
+.+||.||+.........++..+.-+...+...||.+..+.. ....+ -+-+.+. + .+|+.+.++.|..
T Consensus 261 ~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~-~-~~~g~v~~W~PQ~ 338 (455)
T PLN02152 261 SSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHE-L-EEVGMIVSWCSQI 338 (455)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHh-c-cCCeEEEeeCCHH
Confidence 458999999888999999999998899999999998864211 00011 1112211 3 4777778999988
Q ss_pred HHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHh---cCCCCccc----cCCHHHHHHHHH
Q 002431 782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLA---TGLGEEMI----VNSMKEYEERAV 854 (922)
Q Consensus 782 ~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~---~g~~~~~i----~~~~~~~~~~~~ 854 (922)
+.+.- ..+-.|+ .+.|.+|++||+++|||+|+++--.=. ...+..+.. .|+.- .. .-+.++..+++.
T Consensus 339 ~iL~h-~~vg~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~DQ-~~na~~~~~~~~~G~~~-~~~~~~~~~~e~l~~av~ 412 (455)
T PLN02152 339 EVLRH-RAVGCFV---THCGWSSSLESLVLGVPVVAFPMWSDQ-PANAKLLEEIWKTGVRV-RENSEGLVERGEIRRCLE 412 (455)
T ss_pred HHhCC-cccceEE---eeCCcccHHHHHHcCCCEEeccccccc-hHHHHHHHHHhCceEEe-ecCcCCcCcHHHHHHHHH
Confidence 87732 2233455 467799999999999999998742111 111222222 23321 11 126678888888
Q ss_pred HHhcCHH
Q 002431 855 SLALDRQ 861 (922)
Q Consensus 855 ~l~~d~~ 861 (922)
+++.|+.
T Consensus 413 ~vm~~~~ 419 (455)
T PLN02152 413 AVMEEKS 419 (455)
T ss_pred HHHhhhH
Confidence 8886543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.018 Score=57.49 Aligned_cols=161 Identities=17% Similarity=0.101 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 002431 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL-VDAHSNLGNLM 145 (922)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~ 145 (922)
.+.-+..+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-...... ..........+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 34445566667778888888888888888888888888888888888888888887777653322211 11111122333
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCChHHHH
Q 002431 146 KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP--TFPDAYLNLGNVYKALGMPQEAI 223 (922)
Q Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~ 223 (922)
.+.....+. ..+++.+..+|++..+-+.++..+...|+.++|.+.+-.+++.+. .+..+...+..++...|.-+.+.
T Consensus 214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 333333322 234455667888888888888888888888888888888777643 34557777777777777555444
Q ss_pred HHHHH
Q 002431 224 MCYQR 228 (922)
Q Consensus 224 ~~~~~ 228 (922)
..+++
T Consensus 293 ~~~RR 297 (304)
T COG3118 293 LAYRR 297 (304)
T ss_pred HHHHH
Confidence 44443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.1 Score=59.94 Aligned_cols=174 Identities=24% Similarity=0.242 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcC---
Q 002431 49 YDMCIARNEEALRLEPRFAECYGNMANAWKEK-----GDIDLAIRYYLVAIEL-----RPNFADAWSNLASAYMRKG--- 115 (922)
Q Consensus 49 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--- 115 (922)
...|.++++.+.+. .+..+...+|.+|..- .|.+.|+.+|+.+.+. .-.++.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 45678888777654 4567777777777653 5888899999888761 1113446677777777643
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc----CCHH
Q 002431 116 --RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG---LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES----GDLN 186 (922)
Q Consensus 116 --~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~ 186 (922)
+.+.|..+|.++-+.+ ++++.+.+|.++..-. +...|.++|..+.+. .+..+.+.++.+|..- .+..
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence 5677888887776654 4556667777766554 456777777776653 3445556666665532 3566
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHH
Q 002431 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKAL-GMPQEAIMCYQRAV 230 (922)
Q Consensus 187 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 230 (922)
.|..+++++.+.+ .+.+...++..+... +.+..+.-.+....
T Consensus 382 ~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence 7777777776665 233333333333222 55555554444433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.084 Score=57.51 Aligned_cols=166 Identities=16% Similarity=0.206 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-----ChhHHHhHHHHHHHcCChHHHHHHHHHHHhcC-CCc--HHH
Q 002431 201 TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-----NAIAFGNLASTYYERGQADMAILYYKQAIGCD-PRF--LEA 272 (922)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~--~~~ 272 (922)
.....+...+.+..+.|+++.|...+.++....+ .+......+..+...|+..+|+..++..+... ... ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 4456788888999999999999999988887542 25666777888888899999998888877621 111 000
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHc------CChhHHHHHHHHHHhcCCCCchhhhhH
Q 002431 273 YNNLGNALKD--VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW------NMLPAAASYYKATLAVTTGLSAPFNNL 344 (922)
Q Consensus 273 ~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~l 344 (922)
...+...... ............ ......++..+|...... +..+++...|+++.+..|....+|..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred HHHHhhccccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 0011100000 000000000000 001134667777777776 899999999999999999999999988
Q ss_pred HHHHHHcC-----------------CHHHHHHHHHHHHccCCCC
Q 002431 345 AVIYKQQG-----------------NYADAISCYNEVLRIDPLA 371 (922)
Q Consensus 345 a~~~~~~g-----------------~~~~A~~~~~~al~~~p~~ 371 (922)
|..+.+.= -...|+..|-+++..++..
T Consensus 299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 88775431 1245899999999998873
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PLN02555 limonoid glucosyltransferase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0039 Score=69.51 Aligned_cols=141 Identities=13% Similarity=0.144 Sum_probs=88.0
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCCh----hhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc
Q 002431 713 KFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPA----AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (922)
Q Consensus 713 ~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~----~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~ 788 (922)
.+||.+|+......+..+.....-+...+...||.+..+. .....+-+-+.+ .+ .+|+.+.++.|..+.+. ..
T Consensus 278 sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~-~~-~~~g~v~~W~PQ~~iL~-H~ 354 (480)
T PLN02555 278 SVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLE-KA-GDKGKIVQWCPQEKVLA-HP 354 (480)
T ss_pred ceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhh-hc-CCceEEEecCCHHHHhC-CC
Confidence 4788899887777777777777777778877788776321 101112222222 24 47888889999877773 35
Q ss_pred CCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccc--------cCCHHHHHHHHHHHhcCH
Q 002431 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI--------VNSMKEYEERAVSLALDR 860 (922)
Q Consensus 789 ~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i--------~~~~~~~~~~~~~l~~d~ 860 (922)
.+..|+ .+.|-+|++||+++|||+|+++--.=.-.-+.-+...+|+.- -+ .-+.++..+.+.+++.++
T Consensus 355 ~v~~Fv---tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv-~l~~~~~~~~~v~~~~v~~~v~~vm~~~ 430 (480)
T PLN02555 355 SVACFV---THCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGV-RLCRGEAENKLITREEVAECLLEATVGE 430 (480)
T ss_pred ccCeEE---ecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceE-EccCCccccCcCcHHHHHHHHHHHhcCc
Confidence 567776 467789999999999999998743111111111222235543 22 115677777887887654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.29 Score=51.83 Aligned_cols=424 Identities=12% Similarity=0.007 Sum_probs=224.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 35 NLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA-----ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS 109 (922)
Q Consensus 35 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 109 (922)
.+...|.++.+++++.+|.+.|.++.+...+.+ +.+..+....+-.++.+.-.......-+..|+.+....-.+.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 455678889999999999999999987655543 334444444445666776666666666677888888888889
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC----CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C----CcH
Q 002431 110 AYMRKGRLNEAAQCCRQALALN----PL-----------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ-P----TFA 169 (922)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~l~~~----p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p----~~~ 169 (922)
..++.+.+.+|++.+......- +. +...-...+.++...|++.++...+++.+..- + -+.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 9999999999999887765541 11 11122346788889999999999999887642 2 334
Q ss_pred HHHHH----HHHHHHHc----CC-------HHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHH-----cCChHH
Q 002431 170 IAWSN----LAGLFMES----GD-------LNRALQYYKEAVKLK--------PTFPDAYLNLGNVYKA-----LGMPQE 221 (922)
Q Consensus 170 ~~~~~----la~~~~~~----g~-------~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~-----~g~~~~ 221 (922)
..+.. +++.|.-. .. |+-+.-+.+++-..+ |.+. ....+.....- .--+-+
T Consensus 168 d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peee-L~s~imqhlfi~p~e~l~~~mq 246 (549)
T PF07079_consen 168 DMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEE-LFSTIMQHLFIVPKERLPPLMQ 246 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHH-HHHHHHHHHHhCCHhhccHHHH
Confidence 44443 33333210 11 111111111111110 1000 00000000000 000001
Q ss_pred HHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 222 AIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGC-----DPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295 (922)
Q Consensus 222 A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (922)
+++.+++ ...+|+ ......+..-... +.+++....+..... ...-.+.+..+-....+.++..+|.+++.-
T Consensus 247 ~l~~We~-~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~l 323 (549)
T PF07079_consen 247 ILENWEN-FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLAL 323 (549)
T ss_pred HHHHHHh-hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 1111100 001232 1111111111111 334444333333211 111123344444555677888889888888
Q ss_pred HHhhCCCChHHHHh------HHHHHHH-cCC---hhHHHHHHHHHHhcCCCCch---hhhhHHHHHHHcCC-HHHHHHHH
Q 002431 296 CLSLQPSHPQALTN------LGNIYME-WNM---LPAAASYYKATLAVTTGLSA---PFNNLAVIYKQQGN-YADAISCY 361 (922)
Q Consensus 296 al~~~p~~~~~~~~------la~~~~~-~~~---~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~g~-~~~A~~~~ 361 (922)
....+|+.....-. +-.+.+. ... ...=+.+++.+-..+-+... -+..-|.-+-+.|. -++|+.++
T Consensus 324 L~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 324 LKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred HHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 77788876421111 1111110 011 11112233333222222211 13344556667776 88999999
Q ss_pred HHHHccCCCCHHHHHHHHHHHHHhCCHHHHHH--HH------HHHHh---hCC---CcHHHHHHHHH--HHHhcCCHHHH
Q 002431 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ--DY------IRAIT---IRP---TMAEAHANLAS--AYKDSGHVEAA 425 (922)
Q Consensus 362 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~------~~al~---~~p---~~~~~~~~la~--~~~~~g~~~~A 425 (922)
+.+++..+.+...-+..-.. -...|.+|+. .+ +..++ +.| .+.+.-+.|+. .+...|++.++
T Consensus 404 k~il~ft~yD~ec~n~v~~f--vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc 481 (549)
T PF07079_consen 404 KLILQFTNYDIECENIVFLF--VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKC 481 (549)
T ss_pred HHHHHhccccHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHH
Confidence 99999988876543322111 1112233321 11 12221 112 23445555554 56789999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHH
Q 002431 426 IKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSE 465 (922)
Q Consensus 426 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 465 (922)
.-+-.-..+..| ++.++.-+..++....++++|-..+..
T Consensus 482 ~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 482 YLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 999999999999 788888888888877777776665543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0002 Score=46.71 Aligned_cols=32 Identities=28% Similarity=0.514 Sum_probs=22.6
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 002431 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI 392 (922)
Q Consensus 361 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 392 (922)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56677777777777777777777777777664
|
|
| >PLN02208 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.004 Score=68.86 Aligned_cols=153 Identities=10% Similarity=0.050 Sum_probs=90.5
Q ss_pred CCcEEEEecCCCCCCCHH-HHHHHHHH-HhhCCCeEEEEecCChh---hHHHHHHHHHHcCCCCCceEEcCCCCcHHHHH
Q 002431 711 EDKFIFACFNQLYKMDPE-IFNTWCNI-LRRVPNSALWLLRFPAA---GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIR 785 (922)
Q Consensus 711 ~~~~~~~~~~~~~K~~~~-~~~~~~~i-l~~~p~~~l~~~~~~~~---~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~ 785 (922)
++.+||.||+...+..+. +.++...+ ....|. +|++..+.. ....+-+-+.+. +....+++.++.|..+.+.
T Consensus 250 ~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf--~wv~r~~~~~~~~~~~lp~~f~~r-~~~~g~~v~~W~PQ~~iL~ 326 (442)
T PLN02208 250 PKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF--LIAVKPPRGSSTVQEGLPEGFEER-VKGRGVVWGGWVQQPLILD 326 (442)
T ss_pred CCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE--EEEEeCCCcccchhhhCCHHHHHH-HhcCCcEeeccCCHHHHhc
Confidence 356899999988876666 77766665 566774 566553210 011121112111 1124567789999888874
Q ss_pred hccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHH-HhcCCCCcccc------CCHHHHHHHHHHHhc
Q 002431 786 RSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMIV------NSMKEYEERAVSLAL 858 (922)
Q Consensus 786 ~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~-~~~g~~~~~i~------~~~~~~~~~~~~l~~ 858 (922)
...+..|| .+.|-++++||+++|||+|+++--.=.-. -+.++ ..+|+.- -+. -+.++..+++.++..
T Consensus 327 -H~~v~~Fv---tHcG~nS~~Eai~~GVP~l~~P~~~DQ~~-na~~~~~~~g~gv-~~~~~~~~~~~~~~l~~ai~~~m~ 400 (442)
T PLN02208 327 -HPSIGCFV---NHCGPGTIWESLVSDCQMVLIPFLSDQVL-FTRLMTEEFEVSV-EVSREKTGWFSKESLSNAIKSVMD 400 (442)
T ss_pred -CCccCeEE---ccCCchHHHHHHHcCCCEEecCcchhhHH-HHHHHHHHhceeE-EeccccCCcCcHHHHHHHHHHHhc
Confidence 34445566 46779999999999999999874211111 22222 3355543 221 266777777778886
Q ss_pred CH-HHHHHHHHHHHh
Q 002431 859 DR-QKLQALTNKLKS 872 (922)
Q Consensus 859 d~-~~~~~~~~~~~~ 872 (922)
++ +..+++|++.++
T Consensus 401 ~~~e~g~~~r~~~~~ 415 (442)
T PLN02208 401 KDSDLGKLVRSNHTK 415 (442)
T ss_pred CCchhHHHHHHHHHH
Confidence 64 444555555443
|
|
| >cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0041 Score=72.57 Aligned_cols=174 Identities=14% Similarity=0.178 Sum_probs=109.0
Q ss_pred CCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhC----CCeEEEEecCChh-hH------HHHHHHHHHcCCCCCceEEc
Q 002431 709 LPEDKFIFACFNQL--YKMDPEIFNTWCNILRRV----PNSALWLLRFPAA-GE------MRLRAYAVAQGVQPDQIIFT 775 (922)
Q Consensus 709 l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~----p~~~l~~~~~~~~-~~------~~l~~~~~~~g~~~~rv~f~ 775 (922)
+.++.+++|...|+ +|...-++....++.+-. ....+++.|.+.. .. ..+...++.-.+ ++||+|+
T Consensus 474 ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~-~~kVvfl 552 (778)
T cd04299 474 LDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEF-RGRIVFL 552 (778)
T ss_pred cCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCC-CCcEEEE
Confidence 44566788888877 599999888877765411 2378888885431 11 234444443355 5799998
Q ss_pred CCCC--cHHHHHhccCCcEEecCCC--CCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCC-----
Q 002431 776 DVAM--KQEHIRRSSLADLFLDTPL--CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNS----- 845 (922)
Q Consensus 776 ~~~~--~~~~~~~~~~~dv~l~~~~--~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~----- 845 (922)
.--+ .... +++.+||+|.|+. +|. ||+-+=||..|++.++.-...+.+-.. |-++ |...+
T Consensus 553 e~Yd~~lA~~--LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~~-------g~nG-waig~~~~~~ 622 (778)
T cd04299 553 EDYDMALARH--LVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGYD-------GENG-WAIGDGDEYE 622 (778)
T ss_pred cCCCHHHHHH--HHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCccccccC-------CCCc-eEeCCCcccc
Confidence 7422 2333 3899999999975 888 999999999999999655443333222 5555 43321
Q ss_pred ---------HHHHHHH----HHHHhcC------H-HHHHHHHHHHHhhcccCCCCChHHHHHHHH-HHHHHH
Q 002431 846 ---------MKEYEER----AVSLALD------R-QKLQALTNKLKSVRLTCPLFDTARWVKNLE-RSYFKM 896 (922)
Q Consensus 846 ---------~~~~~~~----~~~l~~d------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~y~~~ 896 (922)
.+++-++ ++-+--+ | .+.+.++..++.. .|.|++.+|+++.. +.|.-+
T Consensus 623 ~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~---~p~fs~~Rmv~eY~~~~Y~p~ 691 (778)
T cd04299 623 DDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATL---GPRFSAERMVREYVERFYLPA 691 (778)
T ss_pred ChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc---ccCCCHHHHHHHHHHHhHHHH
Confidence 2222122 2212222 2 4667777777664 67899999998864 455443
|
Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea. |
| >PLN03015 UDP-glucosyl transferase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0093 Score=65.97 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=87.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh-----------hHHHHHHHHHHcCCCCCceEEcCCCCc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-----------GEMRLRAYAVAQGVQPDQIIFTDVAMK 780 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----------~~~~l~~~~~~~g~~~~rv~f~~~~~~ 780 (922)
..++|.||+......+..++..+.-++..+...||.+..+.. ..+.+-.-+.+. +....+++.++.|.
T Consensus 267 ~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er-~~~rGl~v~~W~PQ 345 (470)
T PLN03015 267 RSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDR-TRGVGLVVTQWAPQ 345 (470)
T ss_pred CCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHh-hccCceEEEecCCH
Confidence 469999999999999999999999999999989999853210 011111111111 11112577889998
Q ss_pred HHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHH-HhcCCCCcccc-------CCHHHHHHH
Q 002431 781 QEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMIV-------NSMKEYEER 852 (922)
Q Consensus 781 ~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~-~~~g~~~~~i~-------~~~~~~~~~ 852 (922)
.+.+. ...+-.|| .+.|-+|++||+++|||+|+++--.- ....+..+ ...|+.- -+. -+.++..+.
T Consensus 346 ~~vL~-h~~vg~fv---tH~GwnS~~Eai~~GvP~v~~P~~~D-Q~~na~~~~~~~gvg~-~~~~~~~~~~v~~e~i~~~ 419 (470)
T PLN03015 346 VEILS-HRSIGGFL---SHCGWSSVLESLTKGVPIVAWPLYAE-QWMNATLLTEEIGVAV-RTSELPSEKVIGREEVASL 419 (470)
T ss_pred HHHhc-cCccCeEE---ecCCchhHHHHHHcCCCEEecccccc-hHHHHHHHHHHhCeeE-EecccccCCccCHHHHHHH
Confidence 88885 34445565 46778999999999999999874211 11112222 3334433 221 255666666
Q ss_pred HHHHhc
Q 002431 853 AVSLAL 858 (922)
Q Consensus 853 ~~~l~~ 858 (922)
+.+++.
T Consensus 420 v~~lm~ 425 (470)
T PLN03015 420 VRKIVA 425 (470)
T ss_pred HHHHHc
Confidence 666663
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.14 Score=54.17 Aligned_cols=130 Identities=12% Similarity=-0.024 Sum_probs=106.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 42 IYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121 (922)
Q Consensus 42 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 121 (922)
-....|+.-.|-.-...++...|.++......+.+....|+|+.|...+..+-+.-.....+...+.......|++++|.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34567888889888889999999999999999999999999999999887765554444456666777888899999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 002431 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 171 (922)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 171 (922)
...+-++...-.+++.....+......|-++++...+++.+.++|.....
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 99999988777777777777777778888999999999999987765433
|
|
| >PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0026 Score=68.13 Aligned_cols=138 Identities=13% Similarity=0.140 Sum_probs=89.2
Q ss_pred CCCcEEEEecCCCCCCC-H----HHHHHHHHHHhhCCCeEEEEecC-ChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHH
Q 002431 710 PEDKFIFACFNQLYKMD-P----EIFNTWCNILRRVPNSALWLLRF-PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEH 783 (922)
Q Consensus 710 ~~~~~~~~~~~~~~K~~-~----~~~~~~~~il~~~p~~~l~~~~~-~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~ 783 (922)
..+.+++.++.+..... + .+.++..++.+. ++..+++... .|.+...+.+...+. ++|++...+++.++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~hn~p~~~~~i~~~l~~~----~~v~~~~~l~~~~~ 252 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAER-QNVPVIFPLHNNPRGSDIIIEKLKKY----DNVRLIEPLGYEEY 252 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH-TTEEEEEE--S-HHHHHHHHHHHTT-----TTEEEE----HHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc-CCCcEEEEecCCchHHHHHHHHhccc----CCEEEECCCCHHHH
Confidence 55667888888776665 4 566666666666 6776655543 244466666555543 39999999999999
Q ss_pred HHhccCCcEEecCCCCCChhHHH-HHHHcCCCeeeec--CCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCH
Q 002431 784 IRRSSLADLFLDTPLCNAHTTGT-DILWAGLPMITLP--LEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDR 860 (922)
Q Consensus 784 ~~~~~~~dv~l~~~~~~g~~t~~-eal~~g~Pvv~~~--~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~ 860 (922)
+.+++.++++| -+.| ++. ||.++|+|||++. |+...+|.. |-.- ++..+.++..+++.++..+.
T Consensus 253 l~ll~~a~~vv----gdSs-GI~eEa~~lg~P~v~iR~~geRqe~r~~-------~~nv-lv~~~~~~I~~ai~~~l~~~ 319 (346)
T PF02350_consen 253 LSLLKNADLVV----GDSS-GIQEEAPSLGKPVVNIRDSGERQEGRER-------GSNV-LVGTDPEAIIQAIEKALSDK 319 (346)
T ss_dssp HHHHHHESEEE----ESSH-HHHHHGGGGT--EEECSSS-S-HHHHHT-------TSEE-EETSSHHHHHHHHHHHHH-H
T ss_pred HHHHhcceEEE----EcCc-cHHHHHHHhCCeEEEecCCCCCHHHHhh-------cceE-EeCCCHHHHHHHHHHHHhCh
Confidence 99999999998 5557 888 9999999999985 555555554 5555 66678899888888888774
Q ss_pred HHHHH
Q 002431 861 QKLQA 865 (922)
Q Consensus 861 ~~~~~ 865 (922)
+.+..
T Consensus 320 ~~~~~ 324 (346)
T PF02350_consen 320 DFYRK 324 (346)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 54443
|
1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C. |
| >PLN02534 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0042 Score=69.38 Aligned_cols=103 Identities=18% Similarity=0.298 Sum_probs=70.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh---hHHHH-HHHHHHcCCCCCceEEcCCCCcHHHHHhc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA---GEMRL-RAYAVAQGVQPDQIIFTDVAMKQEHIRRS 787 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~---~~~~l-~~~~~~~g~~~~rv~f~~~~~~~~~~~~~ 787 (922)
..+||.||+......+.-+.-.+.-++..+...||.+..+.. ....+ -+-+.+. +...++++.|+.|..+.+.
T Consensus 283 ~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~-~~~~g~~v~~w~pq~~iL~-- 359 (491)
T PLN02534 283 RSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEER-IKGRGLLIKGWAPQVLILS-- 359 (491)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHh-hccCCeeccCCCCHHHHhc--
Confidence 358999999887777766666667788888889999874211 01111 1112222 2235688889999877663
Q ss_pred cCCcE--EecCCCCCChhHHHHHHHcCCCeeeecCC
Q 002431 788 SLADL--FLDTPLCNAHTTGTDILWAGLPMITLPLE 821 (922)
Q Consensus 788 ~~~dv--~l~~~~~~g~~t~~eal~~g~Pvv~~~~~ 821 (922)
..+| || .+.|.+|++||+++|||+|+++.-
T Consensus 360 -h~~v~~fv---tH~G~ns~~ea~~~GvP~v~~P~~ 391 (491)
T PLN02534 360 -HPAIGGFL---THCGWNSTIEGICSGVPMITWPLF 391 (491)
T ss_pred -CCccceEE---ecCccHHHHHHHHcCCCEEecccc
Confidence 3444 55 467799999999999999998863
|
|
| >TIGR00661 MJ1255 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.02 Score=61.28 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=51.6
Q ss_pred CCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcc-hhhhHHHHHHhcCCCC
Q 002431 769 PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM-ATRVAGSLCLATGLGE 839 (922)
Q Consensus 769 ~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~-~~r~~~~~~~~~g~~~ 839 (922)
.++|.+.++.+ .++...+..||+++.. +|.+|+.||+++|+|+|..+-... ....-+..+...|+..
T Consensus 228 ~~~v~~~~~~~-~~~~~~l~~ad~vI~~---~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~ 295 (321)
T TIGR00661 228 NENVEIRRITT-DNFKELIKNAELVITH---GGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGI 295 (321)
T ss_pred CCCEEEEECCh-HHHHHHHHhCCEEEEC---CChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEE
Confidence 47889888765 6788888999999943 466788999999999999886532 3445667777888865
|
This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases. |
| >PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3 | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0011 Score=72.81 Aligned_cols=114 Identities=15% Similarity=0.049 Sum_probs=72.3
Q ss_pred HHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcC---CCCcccc--------CCHHH
Q 002431 781 QEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATG---LGEEMIV--------NSMKE 848 (922)
Q Consensus 781 ~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g---~~~~~i~--------~~~~~ 848 (922)
.+|..+...||+-+.||.|+- |-|-+|+.+||||.||..-..| |.-+...++ -.+-.|. ++.++
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGF----G~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~ 536 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGF----GCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQ 536 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHH----HHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhH----HHHHHHhhccCcCCcEEEEeCCCCCHHHHHHH
Confidence 356666688999999999999 9999999999999999764332 211111111 1110232 23455
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHh
Q 002431 849 YEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHC 901 (922)
Q Consensus 849 ~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~ 901 (922)
+.+.+..++. ++..|...|.+.++. |.+++++.|....+++|..++++-.
T Consensus 537 la~~l~~f~~~~~rqri~~Rn~ae~L---S~~~dW~~~~~yY~~Ay~~AL~~a~ 587 (633)
T PF05693_consen 537 LADFLYKFCQLSRRQRIIQRNRAERL---SDLADWKNFGKYYEKAYDLALRRAY 587 (633)
T ss_dssp HHHHHHHHHT--HHHHHHHHHHHHHH---GGGGBHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHhcC
Confidence 5566666664 555666667666543 6789999999999999999888654
|
Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D. |
| >PLN03007 UDP-glucosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.013 Score=66.13 Aligned_cols=141 Identities=18% Similarity=0.180 Sum_probs=84.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhh---HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG---EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~---~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~ 788 (922)
..+||.||+........-+....+-+...+...||.++.+... ...+-.-+.+.-. ...|+..++.|..+.+.- .
T Consensus 285 ~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-~~g~~v~~w~PQ~~iL~h-~ 362 (482)
T PLN03007 285 DSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTK-GKGLIIRGWAPQVLILDH-Q 362 (482)
T ss_pred CceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhc-cCCEEEecCCCHHHHhcc-C
Confidence 4588999998776655555555555777777788888743110 1112222222222 457888999998877732 2
Q ss_pred CCcEEecCCCCCChhHHHHHHHcCCCeeeecC--CcchhhhHHHHHH---hcCCC----Cc----cccCCHHHHHHHHHH
Q 002431 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPL--EKMATRVAGSLCL---ATGLG----EE----MIVNSMKEYEERAVS 855 (922)
Q Consensus 789 ~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~--~~~~~r~~~~~~~---~~g~~----~~----~i~~~~~~~~~~~~~ 855 (922)
.+..|| .++|-+|++||+++|||+|+++- +.+.. +..+. .+|+. .. .=.-+.++..+.+.+
T Consensus 363 ~v~~fv---tH~G~nS~~Eal~~GVP~v~~P~~~DQ~~n---a~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~ 436 (482)
T PLN03007 363 ATGGFV---THCGWNSLLEGVAAGLPMVTWPVGAEQFYN---EKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVRE 436 (482)
T ss_pred ccceee---ecCcchHHHHHHHcCCCeeeccchhhhhhh---HHHHHHhhcceeEeccccccccccCcccHHHHHHHHHH
Confidence 233465 46778999999999999999873 22211 11111 12221 10 001267788888888
Q ss_pred HhcCH
Q 002431 856 LALDR 860 (922)
Q Consensus 856 l~~d~ 860 (922)
+..|+
T Consensus 437 ~m~~~ 441 (482)
T PLN03007 437 VIVGE 441 (482)
T ss_pred HhcCc
Confidence 88775
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.26 Score=51.31 Aligned_cols=61 Identities=13% Similarity=-0.046 Sum_probs=27.2
Q ss_pred HHhHHHHHHHcCChH---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 239 FGNLASTYYERGQAD---MAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299 (922)
Q Consensus 239 ~~~l~~~~~~~g~~~---~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 299 (922)
+..++.+|...+..+ +|...++.+....|+.+..+.....++.+.++.+++.+.+.+++..
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 334444444444332 2333333333444444444444444444455555555555555543
|
It is also involved in sporulation []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00099 Score=43.65 Aligned_cols=33 Identities=39% Similarity=0.516 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
.+++.+|.++..+|++++|++.|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455666666666666666666666666666653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00074 Score=44.25 Aligned_cols=32 Identities=47% Similarity=0.635 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
.+|+++|.+|..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0013 Score=43.13 Aligned_cols=32 Identities=31% Similarity=0.640 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002431 373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 373 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46677777777777777777777777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.044 Score=51.19 Aligned_cols=117 Identities=20% Similarity=0.111 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHH
Q 002431 51 MCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN---FADAWSNLASAYMRKGRLNEAAQCC 124 (922)
Q Consensus 51 ~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~ 124 (922)
+.....++....++.+ ..+-..++..+...|++++|+..++.++....+ ..-+-..++.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444445555555443 334567788888899999999999988864333 1335567888899999999998888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 002431 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF 168 (922)
Q Consensus 125 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 168 (922)
+.....+ -........|+++...|+-++|...|+++++..++.
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 7653211 122345678899999999999999999999886444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.57 Score=48.74 Aligned_cols=122 Identities=11% Similarity=0.036 Sum_probs=74.7
Q ss_pred HHHcCCHHHHHHHHHHHHhhC----CCc----hHHHHHHHHHHHhcC-CHHHHHHHHHHHHhc----CCC----------
Q 002431 9 MYKSGSYKQALEHSNSVYERN----PLR----TDNLLLLGAIYYQLH-DYDMCIARNEEALRL----EPR---------- 65 (922)
Q Consensus 9 ~~~~g~~~~A~~~~~~~l~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~----~p~---------- 65 (922)
..++|+++.|..++.++-... |+. ...++..|......+ ++++|...++++.+. .+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457788888888888875433 222 344566677777777 888888888777665 111
Q ss_pred cHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002431 66 FAECYGNMANAWKEKGDID---LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL 130 (922)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 130 (922)
...++..++.+|...+.++ +|..+.+.+.+..|+.+..+.....+..+.++.+++.+.+.+++..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 1234556666666655543 3444445555555665666555555555566666666666666654
|
It is also involved in sporulation []. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.23 Score=52.36 Aligned_cols=130 Identities=22% Similarity=0.225 Sum_probs=75.1
Q ss_pred hHHHHhHHHHHHH----cCChhHHHHHHHHHHhcCCCC-chhhhhHHHHHHHcC-------CHHHHHHHHHHHHccCCCC
Q 002431 304 PQALTNLGNIYME----WNMLPAAASYYKATLAVTTGL-SAPFNNLAVIYKQQG-------NYADAISCYNEVLRIDPLA 371 (922)
Q Consensus 304 ~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~ 371 (922)
+.+.+.+|.+|.. ..+..+|..+|+++.+..... ..+...++..|..-+ +...|...|.++-... +
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~ 186 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N 186 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C
Confidence 3444444444443 224445555555544443222 222344444443321 2246777777776654 6
Q ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC---------------CHHHHHHHHHHH
Q 002431 372 ADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG---------------HVEAAIKSYKQA 432 (922)
Q Consensus 372 ~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~a 432 (922)
+.+...+|.+|.. ..++.+|..+|.++.+... ..+.+.++ ++...| +...|...+.++
T Consensus 187 ~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~ 263 (292)
T COG0790 187 PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKA 263 (292)
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHH
Confidence 7777778877755 3477888888888888766 67777777 555555 666666666666
Q ss_pred HhcCCC
Q 002431 433 LLLRPD 438 (922)
Q Consensus 433 l~~~p~ 438 (922)
....+.
T Consensus 264 ~~~~~~ 269 (292)
T COG0790 264 CELGFD 269 (292)
T ss_pred HHcCCh
Confidence 665544
|
|
| >COG1817 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.039 Score=55.31 Aligned_cols=286 Identities=16% Similarity=0.138 Sum_probs=146.2
Q ss_pred ecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC--------------HHHHHHH
Q 002431 542 VSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS--------------SDMIAKL 607 (922)
Q Consensus 542 ~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 607 (922)
|+-|..+.|..+|+.+++..+.+.++||.+=+-.- +.+.+-++..+..+..+..-. .-.+.+.
T Consensus 3 VwiDI~n~~hvhfFk~lI~elekkG~ev~iT~rd~---~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki 79 (346)
T COG1817 3 VWIDIGNPPHVHFFKNLIWELEKKGHEVLITCRDF---GVVTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKI 79 (346)
T ss_pred EEEEcCCcchhhHHHHHHHHHHhCCeEEEEEEeec---CcHHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHH
Confidence 34566677888999999999999999998766322 236777777776555543211 1347899
Q ss_pred HHhCCCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCccC----CCccc---eeecC
Q 002431 608 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAH----IYSEK---LVHVP 680 (922)
Q Consensus 608 i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~----~~~e~---~~~lp 680 (922)
|.+.++||.+. -|+.-..--.|++. -|..+.- -.+..---..+-+=+++.++.|..... .+.++ +...+
T Consensus 80 ~~~~kpdv~i~--~~s~~l~rvafgLg-~psIi~~-D~ehA~~qnkl~~Pla~~ii~P~~~~~~~~~~~G~~p~~i~~~~ 155 (346)
T COG1817 80 IAEFKPDVAIG--KHSPELPRVAFGLG-IPSIIFV-DNEHAEAQNKLTLPLADVIITPEAIDEEELLDFGADPNKISGYN 155 (346)
T ss_pred HhhcCCceEee--cCCcchhhHHhhcC-CceEEec-CChhHHHHhhcchhhhhheecccccchHHHHHhCCCccceeccc
Confidence 99999999975 33311110111111 1222210 111000011222235566666655433 22222 22222
Q ss_pred Cc-cccCCCccccccCCCCCCCCCcCCCCCCCCc-EEEEec---CCCC-CCCHHHHHHHHHHHhhCCCeEEEEecCChhh
Q 002431 681 HC-YFVNDYKQKNMDVLDPNCQPKRSDYGLPEDK-FIFACF---NQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAG 754 (922)
Q Consensus 681 ~~-~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~-~~~~~~---~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~ 754 (922)
+. .+.+.+ .+.|+ +..-+++|+.++. +++-.+ +..+ +.+.. +....++++..++--.+++...
T Consensus 156 giae~~~v~----~f~pd---~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~-~~~~~~li~~l~k~giV~ipr~--- 224 (346)
T COG1817 156 GIAELANVY----GFVPD---PEVLKELGLEEGETYIVMRPEPWGAHYDNGDRG-ISVLPDLIKELKKYGIVLIPRE--- 224 (346)
T ss_pred ceeEEeecc----cCCCC---HHHHHHcCCCCCCceEEEeeccccceeeccccc-hhhHHHHHHHHHhCcEEEecCc---
Confidence 21 111111 12222 3456789998862 332222 2222 33322 2223333333332223333321
Q ss_pred HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeee-cCCcchhhhHHHHHH
Q 002431 755 EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITL-PLEKMATRVAGSLCL 833 (922)
Q Consensus 755 ~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~-~~~~~~~r~~~~~~~ 833 (922)
...++.++ |. +++..+ -+..+++.++--+|+++ -+|||-.-||...|+|+|.+ +|...+ | +..+-
T Consensus 225 -~~~~eife--~~---~n~i~p-k~~vD~l~Llyya~lvi----g~ggTMarEaAlLGtpaIs~~pGkll~--v-dk~li 290 (346)
T COG1817 225 -KEQAEIFE--GY---RNIIIP-KKAVDTLSLLYYATLVI----GAGGTMAREAALLGTPAISCYPGKLLA--V-DKYLI 290 (346)
T ss_pred -hhHHHHHh--hh---ccccCC-cccccHHHHHhhhheee----cCCchHHHHHHHhCCceEEecCCcccc--c-cHHHH
Confidence 22333443 22 111112 23456566655577766 56688889999999999954 553221 2 24555
Q ss_pred hcCCCCccccCCHHHHHHHHHHHhcCHH
Q 002431 834 ATGLGEEMIVNSMKEYEERAVSLALDRQ 861 (922)
Q Consensus 834 ~~g~~~~~i~~~~~~~~~~~~~l~~d~~ 861 (922)
..|+. +-..|+.+-++.|+++..++.
T Consensus 291 e~G~~--~~s~~~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 291 EKGLL--YHSTDEIAIVEYAVRNLKYRR 316 (346)
T ss_pred hcCce--eecCCHHHHHHHHHHHhhchh
Confidence 55652 223688899999999987765
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.002 Score=42.11 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc
Q 002431 373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM 405 (922)
Q Consensus 373 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 405 (922)
.+++.+|.++..+|++++|++.|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456667777777777777777777777776653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.7 Score=55.55 Aligned_cols=390 Identities=13% Similarity=0.014 Sum_probs=192.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002431 39 LGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEK----G---DIDLAIRYYLVAIELRPNFADAWSNLA 108 (922)
Q Consensus 39 la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la 108 (922)
...++...+.|+.|+..|++.....|.. -++.+..|.....+ | .+++|+.-|++.-. .|.-+--|...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHH
Confidence 3456777888999999999999888864 45666677666542 2 46677777776543 455566788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q 002431 109 SAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ-----GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183 (922)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 183 (922)
.+|.+.|++++-++.+.-+++..|..+..-...-.+..+. .+-..|....--++...|.....-
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 628 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSR----------- 628 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccch-----------
Confidence 8999999999999999999988877665433322222221 112233333334444444432211
Q ss_pred CHHHHHHHHHHHHh---------cCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCC
Q 002431 184 DLNRALQYYKEAVK---------LKPTFPD---AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQ 251 (922)
Q Consensus 184 ~~~~A~~~~~~~l~---------~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 251 (922)
+-...++.... +++.... ..+.+-.. .-.|..---.++++++....+ ..+....-.+....|+
T Consensus 629 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 703 (932)
T PRK13184 629 ---EEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLS-FWSGFTPFLPELFQRAWDLRD-YRALADIFYVACDLGN 703 (932)
T ss_pred ---HHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHH-HHhcCchhhHHHHHHHhhccc-HHHHHHHHHHHHHhcc
Confidence 11111111111 1111111 11111111 122333334445555554433 3555555566677787
Q ss_pred hHHHHHHHHHHHhc-----CCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH-HHHhHHHHHHHc
Q 002431 252 ADMAILYYKQAIGC-----DPRF--------LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ-ALTNLGNIYMEW 317 (922)
Q Consensus 252 ~~~A~~~~~~~l~~-----~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~ 317 (922)
++-+.+.....-.. .|.+ ...+..-..++.....++++.+.+.+ .+|.... +....+.-....
T Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 780 (932)
T PRK13184 704 WEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN---TDPTLILYAFDLFAIQALLD 780 (932)
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh---CCHHHHHHHHHHHHHHHHHh
Confidence 77665555443311 1111 11122223334444455655543322 2222211 111111111112
Q ss_pred CChh---HHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHHHhCCHHHHH
Q 002431 318 NMLP---AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR--IDPLAADGLVNRGNTYKEIGRVTDAI 392 (922)
Q Consensus 318 ~~~~---~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~ 392 (922)
++.+ .+++.+++.................+|....++++|-+++...-. ...+...++...|.-+...++-+-|.
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (932)
T PRK13184 781 EEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAK 860 (932)
T ss_pred ccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHH
Confidence 2222 222222222111112223344556667777888888777744311 12345567777777777777777777
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhH
Q 002431 393 QDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR 459 (922)
Q Consensus 393 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 459 (922)
..|..+.+-.+- +. ...+..+.-.|...+...++++-. ....+...+.|.|+-++.
T Consensus 861 ~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 916 (932)
T PRK13184 861 AHFSGCREDALF-PR--SLDGDIFDYLGKISDNLSWWEKKQ--------LLRQKFLYFHCLGDSEER 916 (932)
T ss_pred HHHhhccccccC-cc--hhhccccchhccccccccHHHHHH--------HHHHHHHHHHHhCChhHh
Confidence 777776632211 11 123333444455444444444321 223344455566665554
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=1.3 Score=51.69 Aligned_cols=403 Identities=11% Similarity=0.011 Sum_probs=216.8
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHH---H
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLH--DYDMCIARNEEALRLEPRFAECYGNMANA---W 77 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~---~ 77 (922)
|..|...++.|++..+.....++ ...|- ..+..........+ .++ .+...++..|+.+..-...... +
T Consensus 37 f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~~~~~----ev~~Fl~~~~~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 37 YQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMNQPAV----QVTNFIRANPTLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhccccCCHH----HHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 55677788888888776666554 33342 22222222222222 233 3344455666655444333332 2
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 78 KEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC 157 (922)
Q Consensus 78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 157 (922)
.+.+++..-+.++ ...|.+.......+......|+.++|.....++-......+.....+-..+.+.|........
T Consensus 110 a~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w 185 (644)
T PRK11619 110 ARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYL 185 (644)
T ss_pred HHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHH
Confidence 3455666555533 224677777777888888899988888877777666555555555555555444443332211
Q ss_pred HHHHHhhCCCcHHHHHHHHH-----------HHHH-cCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHH
Q 002431 158 YLEALRIQPTFAIAWSNLAG-----------LFME-SGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIM 224 (922)
Q Consensus 158 ~~~al~~~p~~~~~~~~la~-----------~~~~-~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~ 224 (922)
-+--+....++......+.. .... ..+...+...+.. ..++. ......++..-....+.+.|..
T Consensus 186 ~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~---~~~~~~~~~~~~~~l~Rlar~d~~~A~~ 262 (644)
T PRK11619 186 ERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART---TGPTDFTRQMAAVAFASVARQDAENARL 262 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc---cCCChhhHHHHHHHHHHHHHhCHHHHHH
Confidence 11111111111111111111 1110 1111111111111 11111 1112223333345566788888
Q ss_pred HHHHHHhhCC---C--hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 225 CYQRAVQTRP---N--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299 (922)
Q Consensus 225 ~~~~~~~~~p---~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 299 (922)
.+.+...... . ...+..++......+...+|...+........ +.+............++++.+...+..+-..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~ 341 (644)
T PRK11619 263 MIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRRGLNTWLARLPME 341 (644)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHHHHHHHHHhcCHh
Confidence 8887644332 1 33444555444444336677777776553322 2233444444556888998888888776554
Q ss_pred CCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCH-H--HH-HHHHHHHHccCCCCHHHH
Q 002431 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY-A--DA-ISCYNEVLRIDPLAADGL 375 (922)
Q Consensus 300 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-~--~A-~~~~~~al~~~p~~~~~~ 375 (922)
........+.+|..+...|+.++|...|+++... . ..|-.++.-. .|.. . .. ...-...+. . ...
T Consensus 342 ~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~--~--~fYG~LAa~~--Lg~~~~~~~~~~~~~~~~~~---~--~~~ 410 (644)
T PRK11619 342 AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ--R--GFYPMVAAQR--LGEEYPLKIDKAPKPDSALT---Q--GPE 410 (644)
T ss_pred hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC--C--CcHHHHHHHH--cCCCCCCCCCCCCchhhhhc---c--ChH
Confidence 4556778899999988899999999999997542 1 1222232221 2211 0 00 000000111 1 134
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002431 376 VNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433 (922)
Q Consensus 376 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 433 (922)
...+..+...|+..+|...+..++.. .+..-...++....+.|.++.|+....+..
T Consensus 411 ~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~~ 466 (644)
T PRK11619 411 MARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAGK 466 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhch
Confidence 56778888999999999999888875 235567788888889999999988776554
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00093 Score=67.23 Aligned_cols=89 Identities=26% Similarity=0.249 Sum_probs=48.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122 (922)
Q Consensus 43 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 122 (922)
.+..|.+++|++.|..++.++|..+..+...+.++.++++...|+..+..+++++|+...-|-..+.....+|++++|..
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhC
Q 002431 123 CCRQALALN 131 (922)
Q Consensus 123 ~~~~~l~~~ 131 (922)
.+..+.+++
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 555555543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.061 Score=49.78 Aligned_cols=60 Identities=23% Similarity=0.285 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 433 (922)
+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|++.|+++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344455555556666666666666666666666666666666666666666666655543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.039 Score=54.46 Aligned_cols=140 Identities=16% Similarity=0.087 Sum_probs=87.6
Q ss_pred EEEecCCC-CCCCHHHHHHHHHHHhhCC-CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcE
Q 002431 715 IFACFNQL-YKMDPEIFNTWCNILRRVP-NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADL 792 (922)
Q Consensus 715 ~~~~~~~~-~K~~~~~~~~~~~il~~~p-~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv 792 (922)
++.+++-. .|+. ++++.+. |.+.+ |..++ +|.+......+++..++. +++.+.-. .++...++..+|.
T Consensus 161 ilI~lGGsDpk~l--t~kvl~~-L~~~~~nl~iV-~gs~~p~l~~l~k~~~~~----~~i~~~~~--~~dma~LMke~d~ 230 (318)
T COG3980 161 ILITLGGSDPKNL--TLKVLAE-LEQKNVNLHIV-VGSSNPTLKNLRKRAEKY----PNINLYID--TNDMAELMKEADL 230 (318)
T ss_pred EEEEccCCChhhh--HHHHHHH-hhccCeeEEEE-ecCCCcchhHHHHHHhhC----CCeeeEec--chhHHHHHHhcch
Confidence 55566644 3643 3444443 34444 44443 464433367777777763 55665543 4566777899999
Q ss_pred EecCCCCCChhHHHHHHHcCCC--eeeecCCcchhhhHHHHHHhcCCCCccc-cCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 002431 793 FLDTPLCNAHTTGTDILWAGLP--MITLPLEKMATRVAGSLCLATGLGEEMI-VNSMKEYEERAVSLALDRQKLQALTNK 869 (922)
Q Consensus 793 ~l~~~~~~g~~t~~eal~~g~P--vv~~~~~~~~~r~~~~~~~~~g~~~~~i-~~~~~~~~~~~~~l~~d~~~~~~~~~~ 869 (922)
.+ ..||.|+.||+..|+| ||++.....+ .+-.+..+|.--.+= ...+......+.++.+|+.+|..+...
T Consensus 231 aI----~AaGstlyEa~~lgvP~l~l~~a~NQ~~---~a~~f~~lg~~~~l~~~l~~~~~~~~~~~i~~d~~~rk~l~~~ 303 (318)
T COG3980 231 AI----SAAGSTLYEALLLGVPSLVLPLAENQIA---TAKEFEALGIIKQLGYHLKDLAKDYEILQIQKDYARRKNLSFG 303 (318)
T ss_pred he----eccchHHHHHHHhcCCceEEeeeccHHH---HHHHHHhcCchhhccCCCchHHHHHHHHHhhhCHHHhhhhhhc
Confidence 87 6789999999999999 5555443222 234566666533121 134566777889999999988887765
Q ss_pred HH
Q 002431 870 LK 871 (922)
Q Consensus 870 ~~ 871 (922)
.+
T Consensus 304 ~~ 305 (318)
T COG3980 304 SK 305 (318)
T ss_pred cc
Confidence 54
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0046 Score=62.02 Aligned_cols=99 Identities=20% Similarity=0.253 Sum_probs=75.1
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLA----ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY 416 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 416 (922)
|..-|+-|++.++|..|...|.+.++....+ ...|.+++.+....|+|..|+....+++..+|.+..++++=+.|+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 3445677777778888888888887765443 346777888888888888888888888888888888888888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC
Q 002431 417 KDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 417 ~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
..+.++.+|..+.+..++.+-+.
T Consensus 164 ~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHH
Confidence 88888888888888777665443
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.039 Score=55.67 Aligned_cols=99 Identities=24% Similarity=0.276 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002431 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELR---PN-FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLG 142 (922)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 142 (922)
+..+..-|+-|++.++|..|+..|.+.++.. |+ +...|.+.+.+....|+|..|+.-..+++..+|.+..+++.-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 5556666777888888888888888877763 32 4556777788888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC
Q 002431 143 NLMKAQGLVQEAYSCYLEALRIQ 165 (922)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~ 165 (922)
.++..+.++.+|....+..+..+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Confidence 88888888888877777765543
|
|
| >PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.017 Score=60.52 Aligned_cols=200 Identities=12% Similarity=0.098 Sum_probs=108.1
Q ss_pred HHhCCCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCccCC-CccceeecCCccccC
Q 002431 608 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHI-YSEKLVHVPHCYFVN 686 (922)
Q Consensus 608 i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~-~~e~~~~lp~~~~~~ 686 (922)
+....+|++|-..+.|+...+-+-.....++.+.+++.|... ...+|.+++ |. ++.. -..+++..++.--..
T Consensus 53 ~~~~~pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~P~~~-~~~FDlvi~-----p~-HD~~~~~~Nvl~t~ga~~~i 125 (311)
T PF06258_consen 53 LEPPWPDLIISAGRRTAPAALALRRASGGRTKTVQIMDPRLP-PRPFDLVIV-----PE-HDRLPRGPNVLPTLGAPNRI 125 (311)
T ss_pred ccCCCCcEEEECCCchHHHHHHHHHHcCCCceEEEEcCCCCC-ccccCEEEE-----Cc-ccCcCCCCceEecccCCCcC
Confidence 445679999877666654333333333455677777888544 677888776 22 2111 223444433211111
Q ss_pred CCccccccCCCCCCCCCcCCC-CCCCC--cEEEEecCCCCCCCHH----HHHHHHHHHhhCCCeEEEEecCC---hhhHH
Q 002431 687 DYKQKNMDVLDPNCQPKRSDY-GLPED--KFIFACFNQLYKMDPE----IFNTWCNILRRVPNSALWLLRFP---AAGEM 756 (922)
Q Consensus 687 ~~~~~~~~~~~~~~~~~r~~~-~l~~~--~~~~~~~~~~~K~~~~----~~~~~~~il~~~p~~~l~~~~~~---~~~~~ 756 (922)
++.... ........++ .+|.+ .+.+|.-++.++.+++ +++...++.+..+ ..++|..+. +....
T Consensus 126 ~~~~l~-----~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~~~~ 199 (311)
T PF06258_consen 126 TPERLA-----EAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPEAEA 199 (311)
T ss_pred CHHHHH-----HHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHHHHH
Confidence 110000 0000000011 12233 3567787778888877 4455556666676 566665543 22233
Q ss_pred HHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhH-HHHHHHcCCCeeeecCCcchhhhH
Q 002431 757 RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTT-GTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 757 ~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t-~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
.|++.+. - ...+.+....+..-+.+++..+|.++ .++ +.+ +.||.+.|+||.+++-+.-.+|+.
T Consensus 200 ~L~~~~~---~-~~~~~~~~~~~~nPy~~~La~ad~i~----VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~ 265 (311)
T PF06258_consen 200 ALRELLK---D-NPGVYIWDGTGENPYLGFLAAADAIV----VTEDSVSMVSEAAATGKPVYVLPLPGRSGRFR 265 (311)
T ss_pred HHHHhhc---C-CCceEEecCCCCCcHHHHHHhCCEEE----EcCccHHHHHHHHHcCCCEEEecCCCcchHHH
Confidence 4443332 2 35663335455555788889999988 344 444 459999999999887665444554
|
The function of this family is unknown. |
| >PRK10017 colanic acid biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.066 Score=58.85 Aligned_cols=102 Identities=14% Similarity=0.078 Sum_probs=69.1
Q ss_pred HHHHHHcCCCCCceEE-cCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCC
Q 002431 759 RAYAVAQGVQPDQIIF-TDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGL 837 (922)
Q Consensus 759 ~~~~~~~g~~~~rv~f-~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~ 837 (922)
++.....+- ++++++ .+..+..+....+..||+++-+=. -+++=|+.+|||+|.+.= +.=..+++..+|+
T Consensus 297 ~~l~~~~~~-~~~~~vi~~~~~~~e~~~iIs~~dl~ig~Rl----Ha~I~a~~~gvP~i~i~Y----~~K~~~~~~~lg~ 367 (426)
T PRK10017 297 LNLRQHVSD-PARYHVVMDELNDLEMGKILGACELTVGTRL----HSAIISMNFGTPAIAINY----EHKSAGIMQQLGL 367 (426)
T ss_pred HHHHHhccc-ccceeEecCCCChHHHHHHHhhCCEEEEecc----hHHHHHHHcCCCEEEeee----hHHHHHHHHHcCC
Confidence 444444442 455443 333445688888999999996522 367899999999997763 3444578899999
Q ss_pred CCccccC----CHHHHHHHHHHHhcCHHH-HHHHHHHH
Q 002431 838 GEEMIVN----SMKEYEERAVSLALDRQK-LQALTNKL 870 (922)
Q Consensus 838 ~~~~i~~----~~~~~~~~~~~l~~d~~~-~~~~~~~~ 870 (922)
++ ++.+ +.++.++.+.++..+.+. ++.+++++
T Consensus 368 ~~-~~~~~~~l~~~~Li~~v~~~~~~r~~~~~~l~~~v 404 (426)
T PRK10017 368 PE-MAIDIRHLLDGSLQAMVADTLGQLPALNARLAEAV 404 (426)
T ss_pred cc-EEechhhCCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 99 7442 667899999999877553 33344433
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.095 Score=55.65 Aligned_cols=110 Identities=13% Similarity=0.092 Sum_probs=74.9
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhcCC------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 20 EHSNSVYERNPLRTDNLLLLGAIYYQLHD------------YDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAI 87 (922)
Q Consensus 20 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 87 (922)
..|++.++.+|.+.++|..+....-..-. .+.-+.+|++|++.+|++...+..+.....+..+-++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778888899999999888765543322 345566777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH
Q 002431 88 RYYLVAIELRPNFADAWSNLASAYMR---KGRLNEAAQCCRQALA 129 (922)
Q Consensus 88 ~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~ 129 (922)
+.+++++..+|++...|......... .-.+++....|.++++
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 77777777777777766655554433 2345666666666654
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.68 Score=48.74 Aligned_cols=183 Identities=22% Similarity=0.199 Sum_probs=93.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cC
Q 002431 44 YQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKE----KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR----KG 115 (922)
Q Consensus 44 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g 115 (922)
...+++..|...+.++-.. .+......++.+|.. ..+..+|..+|..+. ...++.+.+.+|.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCccc
Confidence 3445555555555555431 222444555555543 224555566555333 22344455555555554 23
Q ss_pred CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cC
Q 002431 116 RLNEAAQCCRQALALNPLL-VDAHSNLGNLMKAQG-------LVQEAYSCYLEALRIQPTFAIAWSNLAGLFME----SG 183 (922)
Q Consensus 116 ~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g 183 (922)
+..+|..+|+++.+.+... ..+...++..+..-. +...|...|.++-... +..+...++.+|.. ..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCc
Confidence 5566666666665544222 222445555544421 1225666666655443 44555556655543 23
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---------------ChHHHHHHHHHHHhhCCC
Q 002431 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG---------------MPQEAIMCYQRAVQTRPN 235 (922)
Q Consensus 184 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~p~ 235 (922)
++.+|..+|.++-+... ....+.++ ++...| +...|...+.......+.
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 56666666666666544 55555555 444443 666677777766655443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0017 Score=65.42 Aligned_cols=88 Identities=23% Similarity=0.257 Sum_probs=58.4
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 002431 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429 (922)
Q Consensus 350 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 429 (922)
..|.+++|++.|..+++++|.....+...+.++.++++...|+..+..+++++|+...-|-..+.....+|++++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 44566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCC
Q 002431 430 KQALLLRP 437 (922)
Q Consensus 430 ~~al~~~p 437 (922)
..+.+++-
T Consensus 206 ~~a~kld~ 213 (377)
T KOG1308|consen 206 ALACKLDY 213 (377)
T ss_pred HHHHhccc
Confidence 66666643
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.029 Score=51.96 Aligned_cols=123 Identities=21% Similarity=0.199 Sum_probs=79.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHH
Q 002431 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEA 424 (922)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 424 (922)
+......++.+.++..+++++.+.....-.-... ..-.......++.. ...+...++..+...|++++
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~~~ 80 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLREL------YLDALERLAEALLEAGDYEE 80 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCHHH
Confidence 4444566777777777777777632211000000 00011111122221 13567778899999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHHHHHHhccCCCCC
Q 002431 425 AIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPS 481 (922)
Q Consensus 425 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~ 481 (922)
|+..+++++..+|-+..++..++.++...|+..+|...|+++...+.+.+ |+.|+
T Consensus 81 a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~el--g~~Ps 135 (146)
T PF03704_consen 81 ALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREEL--GIEPS 135 (146)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH--S----
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh--CcCcC
Confidence 99999999999999999999999999999999999999999999888765 44453
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.003 Score=64.84 Aligned_cols=209 Identities=16% Similarity=0.129 Sum_probs=92.7
Q ss_pred HHHHHHHhCCCeEEEcCCCcCCCCchhhhhc-CCCceEEeccccCCCCCCCcccEEEecCccCCcCccC--CCccceeec
Q 002431 603 MIAKLINEDKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAH--IYSEKLVHV 679 (922)
Q Consensus 603 ~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~-~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~--~~~e~~~~l 679 (922)
.+.+.||+.++|++||+.+.. +..++++ -.||..+.+-+... .+....+..+.... ....... ...+....+
T Consensus 3 ~l~~~Lr~~~yD~vid~~~~~---~s~~l~~~~~a~~riG~~~~~~-~~~~~~~~~~~~~~-~~~~v~~~~~ll~~~~~~ 77 (247)
T PF01075_consen 3 ALIKKLRKEKYDLVIDLQGSF---RSALLARLSGAKIRIGFGKDDR-GRSLFYNRKVDRPP-NKHMVDRYLSLLSELLGI 77 (247)
T ss_dssp HHHHHHCTSB-SEEEE-S-SH---HHHHHTCCCSBSEEEEE-TTTS-GGGGGESEEE-TTS-SSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCCCEEEECCCCc---cHHHHHHHHhhccccccCccch-hhhhcccccccccc-cchHHHHHHHHHHHhcCC
Confidence 578999999999999997654 3334443 34788777644332 11111111111111 1100010 011111222
Q ss_pred CCccccCCCccccccCCCCCCCCCcCCCC-CCCCcEEEEecCC-CCCCCHHHHHHHHHHHhhCCC--eEEEEecCChhhH
Q 002431 680 PHCYFVNDYKQKNMDVLDPNCQPKRSDYG-LPEDKFIFACFNQ-LYKMDPEIFNTWCNILRRVPN--SALWLLRFPAAGE 755 (922)
Q Consensus 680 p~~~~~~~~~~~~~~~~~~~~~~~r~~~~-l~~~~~~~~~~~~-~~K~~~~~~~~~~~il~~~p~--~~l~~~~~~~~~~ 755 (922)
+........ ..........+..++ .+...++|...++ ..|.-|. +-|.++.+...+ ..+++.|.+....
T Consensus 78 ~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~i~i~~~a~~~~k~wp~--e~~~~l~~~l~~~~~~vvl~g~~~~~~ 150 (247)
T PF01075_consen 78 PYPSTKPEL-----PLSEEEEAAARELLKSKDKPYIGINPGASWPSKRWPA--EKWAELIERLKERGYRVVLLGGPEEQE 150 (247)
T ss_dssp -SSSSSS---------THHHHTTHHTTTT-TTSSEEEEE---SSGGGS--H--HHHHHHHHHHCCCT-EEEE--SSHHHH
T ss_pred CCCCCCcCC-----cCCHHHHHHHHHhhhhccCCeEEEeecCCCccccCCH--HHHHHHHHHHHhhCceEEEEccchHHH
Confidence 211100000 000000111233333 3334454544332 3455332 344444443222 5677777664422
Q ss_pred HHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 756 MRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 756 ~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
..+...+. .+.....+.+.|..+-.+...+++.+|+++-+- +| .+==|-++|+|+|++-|++...+.+
T Consensus 151 ~~~~~~~~-~~~~~~~~~~~~~~~l~e~~ali~~a~~~I~~D--tg--~~HlA~a~~~p~v~lfg~t~~~~~~ 218 (247)
T PF01075_consen 151 KEIADQIA-AGLQNPVINLAGKTSLRELAALISRADLVIGND--TG--PMHLAAALGTPTVALFGPTNPERWG 218 (247)
T ss_dssp HHHHHHHH-TTHTTTTEEETTTS-HHHHHHHHHTSSEEEEES--SH--HHHHHHHTT--EEEEESSS-HHHHS
T ss_pred HHHHHHHH-HhcccceEeecCCCCHHHHHHHHhcCCEEEecC--Ch--HHHHHHHHhCCEEEEecCCCHHHhC
Confidence 22222222 233223688999988999999999999998321 22 2224778999999999998877766
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.12 Score=48.36 Aligned_cols=94 Identities=19% Similarity=0.115 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 206 YLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALK 281 (922)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 281 (922)
...++..+...+++++|...++..+....+ ..+-..++.+....|++++|+..+....+..-. .......|.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHH
Confidence 344556666666666666666666654333 344455666666666666666655543321101 112334566666
Q ss_pred HcCCHHHHHHHHHHHHhhC
Q 002431 282 DVGRVDEAIQCYNQCLSLQ 300 (922)
Q Consensus 282 ~~g~~~~A~~~~~~al~~~ 300 (922)
..|+-++|+..|+++++..
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 6666666666666666654
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.85 Score=45.21 Aligned_cols=196 Identities=16% Similarity=0.162 Sum_probs=112.5
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCC--------CchHHHHHHHHHHHhcCCHHHHHHHHHHH---Hhc--CCCcHHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNP--------LRTDNLLLLGAIYYQLHDYDMCIARNEEA---LRL--EPRFAEC 69 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~--~p~~~~~ 69 (922)
+++|+...+.+++++|+..|.+++.... ....+...++..|...|++..--+..... ... .|.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 5789999999999999999999997632 12456778899999999876544333222 111 1122222
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 002431 70 YGNMANAW-KEKGDIDLAIRYYLVAIELRPNF------ADAWSNLASAYMRKGRLNEAAQCCRQALAL------NPLLVD 136 (922)
Q Consensus 70 ~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~ 136 (922)
...+...+ .....++.-+.+....++..... ...-..++..+++.|+|.+|+......+.. .+....
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22222221 12234445555554444431111 122345677778888888888777666542 244455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCcHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhc
Q 002431 137 AHSNLGNLMKAQGLVQEAYSCYLEALRI-----QPTFAIAWSNL--AGLFMESGDLNRALQYYKEAVKL 198 (922)
Q Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~~l~~ 198 (922)
.+..-..+|....+..++...+..+-.. .|....+...+ |...+...+|..|..+|-++++-
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 6666667777777777766666555432 23333322222 33445566777777777777653
|
|
| >PRK10117 trehalose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.039 Score=60.58 Aligned_cols=186 Identities=15% Similarity=0.115 Sum_probs=117.7
Q ss_pred CcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCC----eEEEEecCChhh----HHHHHHHHH--------H
Q 002431 703 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPAAG----EMRLRAYAV--------A 764 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~----~~~l~~~~~--------~ 764 (922)
+|+.++ +..++.++-|+. |+.+.=+.+|.++|++.|. .+|+-+..+.-. -.+++..++ +
T Consensus 248 lr~~~~---~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~ 324 (474)
T PRK10117 248 LKAELK---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGK 324 (474)
T ss_pred HHHHcC---CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhc
Confidence 455543 455777888874 9999999999999999986 456656543210 123333332 2
Q ss_pred cCCCCCc--eEEcC-CCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCc
Q 002431 765 QGVQPDQ--IIFTD-VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEE 840 (922)
Q Consensus 765 ~g~~~~r--v~f~~-~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~ 840 (922)
.|- .+- |.+.. .++..++.++|+.+||+|-|+.--| .+++-|-.+|--|= .+|.-.-|+..++.- -|++.
T Consensus 325 fg~-~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~--~~GvLILSefAGaA~---~L~~A 398 (474)
T PRK10117 325 YGQ-LGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPA--NPGVLVLSQFAGAAN---ELTSA 398 (474)
T ss_pred cCC-CCceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCC--CCccEEEecccchHH---HhCCC
Confidence 232 121 55544 4688999999999999999999888 88999999986530 011111222221110 11121
Q ss_pred ccc--CCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHH
Q 002431 841 MIV--NSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLH 900 (922)
Q Consensus 841 ~i~--~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~ 900 (922)
+++ .|.++.++++.+-++ .++.|++--+.+++.+.. +|...+++.+-+....+..+-
T Consensus 399 llVNP~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~---~dv~~W~~~fL~~L~~~~~~~ 458 (474)
T PRK10117 399 LIVNPYDRDEVAAALDRALTMPLAERISRHAEMLDVIVK---NDINHWQECFISDLKQIVPRS 458 (474)
T ss_pred eEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh---CCHHHHHHHHHHHHHHhhhcC
Confidence 333 588888876655444 566666666667776644 899999999888777765433
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.18 Score=53.60 Aligned_cols=164 Identities=13% Similarity=0.071 Sum_probs=88.3
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 54 ARNEEALRLEPRFAECYGNMANAWKEKGD------------IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121 (922)
Q Consensus 54 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 121 (922)
.-|++.++.+|.+..+|..++...-..-. .+.-+.+|++|++.+|++...+..+.....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34667777888888888877765544322 344556666666666666666666666666666666666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002431 122 QCCRQALALNPLLVDAHSNLGNLMKA---QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198 (922)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (922)
+.+++++..+|.+...|..+...... .-.++.....|.++++.-.... ............++
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~----------~~~~~~~~~~~~~e----- 150 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRR----------SGRMTSHPDLPELE----- 150 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhh----------ccccccccchhhHH-----
Confidence 66666666666666655554443332 2234455555555443210000 00000000000000
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002431 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233 (922)
Q Consensus 199 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 233 (922)
.....++..+.......|..+.|+..++-.++.+
T Consensus 151 -~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 151 -EFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred -HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 0012355666677777777788887777777753
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.52 E-value=2.4 Score=49.26 Aligned_cols=230 Identities=16% Similarity=0.038 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--c-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-
Q 002431 134 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT--F-------AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP- 203 (922)
Q Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~- 203 (922)
++......+.......++.+|..+..++...-+. . ....-..+.+....|++++|.+..+.++..-|.+.
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3445555666666777777777777666554322 1 12233345566667777777777777776655432
Q ss_pred ----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------hhHHHhHHHHHHHcCChHHH--HHHHHHH----HhcC
Q 002431 204 ----DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYERGQADMA--ILYYKQA----IGCD 266 (922)
Q Consensus 204 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A--~~~~~~~----l~~~ 266 (922)
.++..++.+..-.|++++|..+..++.+.... ..+....+.++..+|+...+ ...+... +...
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 24556667777777777777777666554211 22333445566666632222 2222211 1223
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCh--H-HHHhHHHHHHHcCChhHHHHHHHHHHhcCCCC-c
Q 002431 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ----PSHP--Q-ALTNLGNIYMEWNMLPAAASYYKATLAVTTGL-S 338 (922)
Q Consensus 267 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~--~-~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~ 338 (922)
|.........+.++...-+++.+.....+.++.. |... . .++.++.++...|++++|...+........+. .
T Consensus 574 ~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 574 PRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 3322222222222222222444444444444332 2211 1 22366777777777777777776665543222 1
Q ss_pred hh-hh-----hHHHHHHHcCCHHHHHHHHHH
Q 002431 339 AP-FN-----NLAVIYKQQGNYADAISCYNE 363 (922)
Q Consensus 339 ~~-~~-----~la~~~~~~g~~~~A~~~~~~ 363 (922)
.. |. ........+|+.++|.....+
T Consensus 654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 11 11 111222345677766666655
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.51 E-value=1.1 Score=49.00 Aligned_cols=243 Identities=14% Similarity=0.052 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----hhHHHhHHHHHHHcCChHHHHHHHH
Q 002431 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQADMAILYYK 260 (922)
Q Consensus 186 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~ 260 (922)
+...+.+....+..|+++......+..+...|+.+.|+..++..++ +. ...++.++.++.-+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455556666667888888888888888888887888888887776 22 3455677788888888888888888
Q ss_pred HHHhcCCCcHHHHHHHH-HHHHH--------cCCHHHHHHHHHHHHh---hCCCChHHHHhHHHHHHHcCChhHHHHHHH
Q 002431 261 QAIGCDPRFLEAYNNLG-NALKD--------VGRVDEAIQCYNQCLS---LQPSHPQALTNLGNIYMEWNMLPAAASYYK 328 (922)
Q Consensus 261 ~~l~~~p~~~~~~~~l~-~~~~~--------~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 328 (922)
...+.+.-+.-.|..++ .++.. .|+-++|..+++...+ ..|.+..+-.. -..++.++-.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f---------~~RKverf~~ 398 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF---------IVRKVERFVK 398 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH---------HHHHHHHHhc
Confidence 87766554443444444 22221 2344444444443322 22221110000 0011111111
Q ss_pred HHHhcCCCCch--hhhhHHHHHHHc--CCHHHHHHHHH--HHHccCCCCHH--HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 002431 329 ATLAVTTGLSA--PFNNLAVIYKQQ--GNYADAISCYN--EVLRIDPLAAD--GLVNRGNTYKEIGRVTDAIQDYIRAIT 400 (922)
Q Consensus 329 ~a~~~~~~~~~--~~~~la~~~~~~--g~~~~A~~~~~--~al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~ 400 (922)
+.- .++.... .+..++..+..- ...++..+.-. +.-+.+..+.+ -+..+|.++..+|+...|..+|...++
T Consensus 399 ~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~ 477 (546)
T KOG3783|consen 399 RGP-LNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVE 477 (546)
T ss_pred ccc-ccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 110 1111111 233444333321 12222221111 11112211222 456679999999999999999998885
Q ss_pred hC---CC----cHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCH
Q 002431 401 IR---PT----MAEAHANLASAYKDSGH-VEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 401 ~~---p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~ 440 (922)
.. .+ .|.+++.+|..|..+|. ..++..++.+|.+...++.
T Consensus 478 ~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 478 KESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 42 11 26799999999999998 9999999999998876654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.32 Score=53.41 Aligned_cols=85 Identities=12% Similarity=0.058 Sum_probs=39.7
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHH
Q 002431 268 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 347 (922)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 347 (922)
...+.+..++..+.....+.-|.++|+++-.. ..+.+++.+.+++.+|..+-++.-+. .+.+|+-.|.-
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqw 813 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQW 813 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCccc---cccccchHHHH
Confidence 33344445555555555555555555543211 12334445555555555444432222 12334455555
Q ss_pred HHHcCCHHHHHHHHHH
Q 002431 348 YKQQGNYADAISCYNE 363 (922)
Q Consensus 348 ~~~~g~~~~A~~~~~~ 363 (922)
+.+..+++||.+.|.+
T Consensus 814 LAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHK 829 (1081)
T ss_pred hhhhhhHHHHHHHHHH
Confidence 5555555555554443
|
|
| >PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.033 Score=61.92 Aligned_cols=180 Identities=17% Similarity=0.191 Sum_probs=97.7
Q ss_pred CcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCC----eEEEEecCChhh--------HHHHHHHHH----H
Q 002431 703 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPAAG--------EMRLRAYAV----A 764 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~--------~~~l~~~~~----~ 764 (922)
+|++++ .+..++.++-|+. |+.+.-+.+|.++|++.|. .+|+-++.+... +.++.+.+. +
T Consensus 268 l~~~~~--~~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~ 345 (474)
T PF00982_consen 268 LREKFK--GKRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGK 345 (474)
T ss_dssp HHHHTT--T-SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcC--CCcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhh
Confidence 555543 2347888888874 9999999999999999986 455555533111 123333322 3
Q ss_pred cCCC-CCceEEcC-CCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCc-
Q 002431 765 QGVQ-PDQIIFTD-VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEE- 840 (922)
Q Consensus 765 ~g~~-~~rv~f~~-~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~- 840 (922)
.|-. -.-|++.. .++.++.+++|+.+||+|.|+.-.| .+++.|-.++-.+ .+|.-.-|..+++. . .|++.
T Consensus 346 ~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~---~~GvLiLSefaGaa-~--~L~~~a 419 (474)
T PF00982_consen 346 YGTPDWTPIIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDD---NPGVLILSEFAGAA-E--QLSEAA 419 (474)
T ss_dssp H-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-T---S--EEEEETTBGGG-G--T-TTS-
T ss_pred cccCCceeEEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecC---CCCceEeeccCCHH-H--HcCCcc
Confidence 3431 11255544 5888999999999999999999999 9999999999776 11111122222110 0 23321
Q ss_pred -cc-cCCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 841 -MI-VNSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 841 -~i-~~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
+| ..|.++.++++.+-++ .++.|+..-+.+++.+.. +|...+++.+-...
T Consensus 420 l~VNP~d~~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~---~~~~~W~~~~l~~L 472 (474)
T PF00982_consen 420 LLVNPWDIEEVADAIHEALTMPPEERKERHARLREYVRE---HDVQWWAESFLRDL 472 (474)
T ss_dssp EEE-TT-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHH---T-HHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHh---CCHHHHHHHHHHHh
Confidence 22 2477877766655444 566666666677777655 78888887776543
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.41 E-value=2.8 Score=48.75 Aligned_cols=292 Identities=16% Similarity=0.075 Sum_probs=170.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CcHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF-AECYGNMANAWKEKGDIDLAIRYYLVAIELRP-----NFADAWSN 106 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~ 106 (922)
.+.+..-+.-+...|...+|++..-.+ .+|.. +......+.-....++..--. .+++.-| +++.....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsll~----~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSLLL----AWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHHHH----HHHHhCCHHHHhhCchHHHH
Confidence 556666667777888888888765443 12221 112222233333344433222 2222222 23455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----HHHH
Q 002431 107 LASAYMRKGRLNEAAQCCRQALALNPL---------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF-----AIAW 172 (922)
Q Consensus 107 la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 172 (922)
.+.......++.+|..++.++...-+. ........+.+....|++++|.+..+.++..-|.+ ....
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 677778889999999999888665432 22345566778888999999999999999876654 4567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC--hHHHHHHHHHHHh----hCCC-hhHH
Q 002431 173 SNLAGLFMESGDLNRALQYYKEAVKLKPTF------PDAYLNLGNVYKALGM--PQEAIMCYQRAVQ----TRPN-AIAF 239 (922)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~----~~p~-~~~~ 239 (922)
..++.+..-.|++++|..+...+.+..... ..+....+.++..+|+ +.+....+...-. ..|. ....
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~ 580 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV 580 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence 778888999999999999988887753221 1233455677788883 3333333333222 1222 1122
Q ss_pred HhHHHHHHHcCChHHHHHHHHHHHh----cCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-hH----H-
Q 002431 240 GNLASTYYERGQADMAILYYKQAIG----CDPRFLE---AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH-PQ----A- 306 (922)
Q Consensus 240 ~~l~~~~~~~g~~~~A~~~~~~~l~----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~----~- 306 (922)
...+.++...-+++.+..-..+.++ ..|.... .++.++.+....|++++|...+.++.....+. +. +
T Consensus 581 ~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 581 RIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 2222222222225554444444432 2233222 23478899999999999999999887753222 11 1
Q ss_pred -HHhHHHHHHHcCChhHHHHHHHHH
Q 002431 307 -LTNLGNIYMEWNMLPAAASYYKAT 330 (922)
Q Consensus 307 -~~~la~~~~~~~~~~~A~~~~~~a 330 (922)
...........|+.++|.....+.
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHhc
Confidence 111122234567888887777663
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0059 Score=39.89 Aligned_cols=32 Identities=41% Similarity=0.615 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
.+++.+|.+|...|++++|.+.|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34566666666666666666666666666553
|
... |
| >TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.034 Score=60.21 Aligned_cols=114 Identities=11% Similarity=0.072 Sum_probs=66.4
Q ss_pred CCCCCcEEEEecCC-CCCCCHHHHHHHHHHHhh--CCCeEEEEecCChhhH-HHHHHHHHHcCCCCCceEEcCCCCcHHH
Q 002431 708 GLPEDKFIFACFNQ-LYKMDPEIFNTWCNILRR--VPNSALWLLRFPAAGE-MRLRAYAVAQGVQPDQIIFTDVAMKQEH 783 (922)
Q Consensus 708 ~l~~~~~~~~~~~~-~~K~~~~~~~~~~~il~~--~p~~~l~~~~~~~~~~-~~l~~~~~~~g~~~~rv~f~~~~~~~~~ 783 (922)
|+.+..++++..++ ..|.-| .+-|.++.+. ..+..+++.|.+...+ +..++.....+- ..-+.+.|..+-.+.
T Consensus 178 ~~~~~~i~i~p~a~~~~K~Wp--~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~-~~~~~l~g~~sL~el 254 (344)
T TIGR02201 178 GVGQNYIVIQPTSRWFFKCWD--NDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQT-PRVTSLAGKLTLPQL 254 (344)
T ss_pred CCCCCEEEEeCCCCccccCCC--HHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCC-CcccccCCCCCHHHH
Confidence 45445556655443 345533 2333333321 1256677777543212 223333222222 123558899889999
Q ss_pred HHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 784 IRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 784 ~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
.++++.+|+++.. -+|++= =|-++|+|+|++-|++-..+.+
T Consensus 255 ~ali~~a~l~Vs~--DSGp~H--lAaA~g~p~v~Lfgpt~p~~~~ 295 (344)
T TIGR02201 255 AALIDHARLFIGV--DSVPMH--MAAALGTPLVALFGPSKHIFWR 295 (344)
T ss_pred HHHHHhCCEEEec--CCHHHH--HHHHcCCCEEEEECCCCccccc
Confidence 9999999999943 333222 3778999999999987665554
|
This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II. |
| >PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long) | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.17 Score=52.12 Aligned_cols=119 Identities=9% Similarity=-0.087 Sum_probs=80.5
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEE-ecCChh---hHHHHHHHHHHcCCCCCceE-EcCCCCcHHHHHhc
Q 002431 713 KFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWL-LRFPAA---GEMRLRAYAVAQGVQPDQII-FTDVAMKQEHIRRS 787 (922)
Q Consensus 713 ~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~-~~~~~~---~~~~l~~~~~~~g~~~~rv~-f~~~~~~~~~~~~~ 787 (922)
.+.+|.-+.+.-+|-+.++...+. ...+.++++ +|.|.. -.+++++...++-- .+++. +...+|.+||++++
T Consensus 187 tILvGNSgd~sNnHieaL~~L~~~--~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~-~~~~~iL~e~mpf~eYl~lL 263 (360)
T PF07429_consen 187 TILVGNSGDPSNNHIEALEALKQQ--FGDDVKIIVPLSYGANNQAYIQQVIQAGKELFG-AENFQILTEFMPFDEYLALL 263 (360)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHh--cCCCeEEEEECCCCCchHHHHHHHHHHHHHhcC-ccceeEhhhhCCHHHHHHHH
Confidence 456777777778886666554432 234566554 355532 13456666666533 35665 46689999999999
Q ss_pred cCCcEEecCCC-CCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCC
Q 002431 788 SLADLFLDTPL-CNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGE 839 (922)
Q Consensus 788 ~~~dv~l~~~~-~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~ 839 (922)
..||+....+. --|--|++=.+++|+||+.....++- ..|...|+|-
T Consensus 264 ~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~np~~-----~~l~~~~ipV 311 (360)
T PF07429_consen 264 SRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRDNPFW-----QDLKEQGIPV 311 (360)
T ss_pred HhCCEEEEeechhhhHhHHHHHHHcCCeEEEecCChHH-----HHHHhCCCeE
Confidence 99999998875 45556677899999999976655443 4566668865
|
This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall |
| >TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.023 Score=61.32 Aligned_cols=116 Identities=9% Similarity=-0.027 Sum_probs=68.9
Q ss_pred cCCCCCCC--CcEEEEecCC--CCCCCH--HHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCC
Q 002431 704 RSDYGLPE--DKFIFACFNQ--LYKMDP--EIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 704 r~~~~l~~--~~~~~~~~~~--~~K~~~--~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
...++++. ..+++.-.++ ..|.-| .+.++-..+ .. .+..+++.|.+.. ++...+..+. .....+.+.|.
T Consensus 165 ~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l-~~-~~~~ivl~G~~~e-~~~~~~i~~~--~~~~~~~l~g~ 239 (334)
T TIGR02195 165 LAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRL-ID-QGYQVVLFGSAKD-HPAGNEIEAL--LPGELRNLAGE 239 (334)
T ss_pred HHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHH-HH-CCCEEEEEEChhh-HHHHHHHHHh--CCcccccCCCC
Confidence 34556653 2344443332 456643 333333333 33 3567777776543 4444443332 32233458898
Q ss_pred CCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
.+-.+..++++.+|+++.. -+|++= =|-++|+|+|++-|.+...+.+
T Consensus 240 ~sL~el~ali~~a~l~I~~--DSGp~H--lAaA~~~P~i~lfG~t~p~~~~ 286 (334)
T TIGR02195 240 TSLDEAVDLIALAKAVVTN--DSGLMH--VAAALNRPLVALYGSTSPDFTP 286 (334)
T ss_pred CCHHHHHHHHHhCCEEEee--CCHHHH--HHHHcCCCEEEEECCCChhhcC
Confidence 8889999999999999833 233222 3668999999999988776643
|
This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.29 E-value=3 Score=47.91 Aligned_cols=411 Identities=12% Similarity=0.027 Sum_probs=228.2
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---HcCCHHHHHHHH
Q 002431 48 DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM---RKGRLNEAAQCC 124 (922)
Q Consensus 48 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~ 124 (922)
.-++=+..++.-+.+++.+...+..|..++.+.|++++-...-.++.++.|..+..|.....-.. ..++..++...|
T Consensus 94 ~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ 173 (881)
T KOG0128|consen 94 GGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELF 173 (881)
T ss_pred cchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHH
Confidence 34445556666667777777888888888888888888777777777777777777765544332 236677777788
Q ss_pred HHHHHhCCCCHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHhhCC-------CcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 125 RQALALNPLLVDAHSNLGNLM-------KAQGLVQEAYSCYLEALRIQP-------TFAIAWSNLAGLFMESGDLNRALQ 190 (922)
Q Consensus 125 ~~~l~~~p~~~~~~~~la~~~-------~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~ 190 (922)
++++.-. +.+..|...+... ...++++.....|.+++..-. .....+..+-..|...-..++.+.
T Consensus 174 ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a 252 (881)
T KOG0128|consen 174 EKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIA 252 (881)
T ss_pred HHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8877532 3334444443333 344567777777777776421 122334444555555555566667
Q ss_pred HHHHHHhcCCCCHHHH----HHHH---HHHHHcCChHHHHHHHHHHH-------hhCCC-hhHHHhHHHHHHHcCChHHH
Q 002431 191 YYKEAVKLKPTFPDAY----LNLG---NVYKALGMPQEAIMCYQRAV-------QTRPN-AIAFGNLASTYYERGQADMA 255 (922)
Q Consensus 191 ~~~~~l~~~p~~~~~~----~~l~---~~~~~~g~~~~A~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A 255 (922)
++...+... -+.++. .... .......+++.|..-+.+.+ +..+. ...|..+.......|....-
T Consensus 253 ~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri 331 (881)
T KOG0128|consen 253 LFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRI 331 (881)
T ss_pred HHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 776666543 222211 1111 11122334444444433332 22232 45566677777778888888
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCC-hhHHHHHHHHHHhc
Q 002431 256 ILYYKQAIGCDPRFLEAYNNLGNALK-DVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM-LPAAASYYKATLAV 333 (922)
Q Consensus 256 ~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~ 333 (922)
...++++....+.+...|...+..+- .++-.+.+...+.+++..+|-....|-..-..+.+.+. ...-...+.+.+..
T Consensus 332 ~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~ 411 (881)
T KOG0128|consen 332 QLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSM 411 (881)
T ss_pred HHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH
Confidence 88888888766666777776665442 23334455556666666666555444433322322222 11222222332221
Q ss_pred CCCCchhhhhHHHHHH-Hc-------------CCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHH-HhCCHHHHHHHHHH
Q 002431 334 TTGLSAPFNNLAVIYK-QQ-------------GNYADAISCYNEVLRI-DPLAADGLVNRGNTYK-EIGRVTDAIQDYIR 397 (922)
Q Consensus 334 ~~~~~~~~~~la~~~~-~~-------------g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 397 (922)
.-. +.+....|. .. ..+..|...|...... -......+-..|.... .+++.+.|..++..
T Consensus 412 ~~~----l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~ 487 (881)
T KOG0128|consen 412 TVE----LHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNF 487 (881)
T ss_pred HHH----HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 100 111111111 11 2244444444444333 1122334444444444 35788889888888
Q ss_pred HHhhCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHhhcccCChhhHhHHHH
Q 002431 398 AITIRPTMAE-AHANLASAYKDSGHVEAAIKSYKQALLLRPDFP---EATCNLLHTLQCVCSWEDRDRMFS 464 (922)
Q Consensus 398 al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~ 464 (922)
.+.....+.. .|.....+-...|+...++.++++++..--++. .++..+.....+.|.|+.......
T Consensus 488 imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~ 558 (881)
T KOG0128|consen 488 IMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPE 558 (881)
T ss_pred cccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHH
Confidence 8877655554 788888888888999999998888887533332 233344445566677766554433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.29 E-value=2.8 Score=48.25 Aligned_cols=110 Identities=17% Similarity=0.171 Sum_probs=56.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCH
Q 002431 40 GAIYYQLHDYDMCIARNEEALRLEPR-FAECYGNMANAWKEKGDIDLAIRYYLVAIEL-RPNFADAWSNLASAYMRKGRL 117 (922)
Q Consensus 40 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~ 117 (922)
...+++..-|+-|+.+.+.- ..+++ -.......|.-+++.|++++|...|-+.+.. +|... ..-+....+.
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~V------i~kfLdaq~I 413 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEV------IKKFLDAQRI 413 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHH------HHHhcCHHHH
Confidence 34455566666666655432 12222 2455666677777777777777777776653 22211 1112223333
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002431 118 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYS 156 (922)
Q Consensus 118 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 156 (922)
.+-..+++.+.+..-.+.+--..|-.+|.++++.++-.+
T Consensus 414 knLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred HHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHH
Confidence 334444555555444444444555666666666655433
|
|
| >cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS) | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.11 Score=54.36 Aligned_cols=81 Identities=19% Similarity=0.102 Sum_probs=56.0
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCC
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLE 821 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~ 821 (922)
+.++++.|.+.. .+..+......+- ...+.+.|..+..+...+++.+|+++.+-. | +.-+ |.++|+|+|++-|.
T Consensus 153 ~~~ivl~g~~~e-~~~~~~i~~~~~~-~~~~~~~~~~~l~e~~~li~~~~l~I~~Ds--g-~~Hl-A~a~~~p~i~l~g~ 226 (279)
T cd03789 153 GARVVLTGGPAE-RELAEEIAAALGG-PRVVNLAGKTSLRELAALLARADLVVTNDS--G-PMHL-AAALGTPTVALFGP 226 (279)
T ss_pred CCEEEEEechhh-HHHHHHHHHhcCC-CccccCcCCCCHHHHHHHHHhCCEEEeeCC--H-HHHH-HHHcCCCEEEEECC
Confidence 677888876543 5555554444432 244667888888999999999999995432 2 2223 35899999999998
Q ss_pred cchhhhH
Q 002431 822 KMATRVA 828 (922)
Q Consensus 822 ~~~~r~~ 828 (922)
+...+.+
T Consensus 227 ~~~~~~~ 233 (279)
T cd03789 227 TDPARTG 233 (279)
T ss_pred CCccccC
Confidence 7777654
|
Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.049 Score=45.97 Aligned_cols=103 Identities=21% Similarity=0.203 Sum_probs=68.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLRT---DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
+|..+++.||+-+|+++.+..+...+++. ..+...|.++..+. .+.+..+...-+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~yL--------- 60 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRYL--------- 60 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHHH---------
Confidence 68889999999999999999998887765 34445555554332 2222222222222
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL 130 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 130 (922)
-.+++.|.++..+.|..+..++.+|.-+.....|+++..-.++++..
T Consensus 61 --l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 61 --LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred --HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 23566777777777777777777777666666777777777777654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.012 Score=38.30 Aligned_cols=32 Identities=22% Similarity=0.592 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002431 373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 373 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
.+++.+|.++..+|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666666666667777777777666666653
|
... |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.33 Score=52.13 Aligned_cols=168 Identities=18% Similarity=0.028 Sum_probs=80.4
Q ss_pred HhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---H
Q 002431 26 YERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA---D 102 (922)
Q Consensus 26 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~ 102 (922)
+..+|.+.+++..++.++..+|+.+.|.+++++++-.........+.....-...|. +. .--..+.|. .
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~---~r-----L~~~~~eNR~ffl 104 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN---CR-----LDYRRPENRQFFL 104 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc---cc-----cCCccccchHHHH
Confidence 456777788888888888888888888888777753211000000000000000000 00 000011122 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCC-----cHHHHHHH
Q 002431 103 AWSNLASAYMRKGRLNEAAQCCRQALALNPL-LVDAHSNLG-NLMKAQGLVQEAYSCYLEALRIQPT-----FAIAWSNL 175 (922)
Q Consensus 103 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l 175 (922)
+.......+.+.|-+..|.++.+-++.++|. |+-...... ....+.++++--++.++........ -+...+..
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 3344455555666666666666666666665 444333222 2333445555444444443331110 12234445
Q ss_pred HHHHHHcCCH---------------HHHHHHHHHHHhcCCC
Q 002431 176 AGLFMESGDL---------------NRALQYYKEAVKLKPT 201 (922)
Q Consensus 176 a~~~~~~g~~---------------~~A~~~~~~~l~~~p~ 201 (922)
+.++...++. ++|...+.+++...|.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 5555555555 6777777777766554
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.7 Score=42.29 Aligned_cols=120 Identities=16% Similarity=0.066 Sum_probs=54.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--c--HHHHHHHHHHHHHcCCH
Q 002431 44 YQLHDYDMCIARNEEALRLEPRF--AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN--F--ADAWSNLASAYMRKGRL 117 (922)
Q Consensus 44 ~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~la~~~~~~g~~ 117 (922)
.+.++.++|+..|..+-+.+-.. .-+....+.+..+.|+...|+..|..+-...|- - ..+...-+..+...|.|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34444555555555444333221 223344455555555555555555554433221 0 11223334444455555
Q ss_pred HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 118 NEAAQCCRQALA-LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR 163 (922)
Q Consensus 118 ~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (922)
++.....+.+-. .+|-...+.-.||....+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 554444443321 1233334445555555555555555555555444
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=4.5 Score=47.33 Aligned_cols=399 Identities=12% Similarity=0.001 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHH-
Q 002431 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG--DIDLAIRYYLVAIELRPNFADAWSNLASA- 110 (922)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~- 110 (922)
...+.-+.-..+.|++..+.....++ +..|-. .|..........+ .++ -+...++..|+.+..-......
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL~--~yl~y~~L~~~l~~~~~~----ev~~Fl~~~~~~P~~~~Lr~~~l 106 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPLY--PYLEYRQLTQDLMNQPAV----QVTNFIRANPTLPPARSLQSRFV 106 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCcH--hHHHHHHHHhccccCCHH----HHHHHHHHCCCCchHHHHHHHHH
Confidence 34566777788888888876665543 333332 2222222222222 333 3344455566655443333332
Q ss_pred --HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH
Q 002431 111 --YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRA 188 (922)
Q Consensus 111 --~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 188 (922)
+.+.+++..-+.++ ...|.+....+.++......|+.++|.....++.......+.....+-..+.+.|.....
T Consensus 107 ~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~ 182 (644)
T PRK11619 107 NELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPL 182 (644)
T ss_pred HHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHH
Confidence 23455555554422 234778888888888888999988887777777665544444444444444444433332
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHH-----------HH-cCChHHHHHHHHHHHhhCCC--hhHHHhHHHHHHHcCChHH
Q 002431 189 LQYYKEAVKLKPTFPDAYLNLGNVY-----------KA-LGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYERGQADM 254 (922)
Q Consensus 189 ~~~~~~~l~~~p~~~~~~~~l~~~~-----------~~-~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 254 (922)
...-+--+.....+......+...+ .. ..+...+...+.. ..++ ......++..-....+.+.
T Consensus 183 d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~---~~~~~~~~~~~~~~l~Rlar~d~~~ 259 (644)
T PRK11619 183 AYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART---TGPTDFTRQMAAVAFASVARQDAEN 259 (644)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc---cCCChhhHHHHHHHHHHHHHhCHHH
Confidence 2111111111111111111111111 11 1111111111111 1122 1122223333345566778
Q ss_pred HHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHH
Q 002431 255 AILYYKQAIGCDPRFL----EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330 (922)
Q Consensus 255 A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 330 (922)
|...+.+......-.. .++..++.-....+...+|...+..+.... .+.+..-.........++++.+...+..+
T Consensus 260 A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~~i~~L 338 (644)
T PRK11619 260 ARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNTWLARL 338 (644)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHHHHHhc
Confidence 8888877643332221 233344444444332566667666654332 23333444444555788888887777776
Q ss_pred HhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCH---HHH-HHHHHHHHhhCCCcH
Q 002431 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV---TDA-IQDYIRAITIRPTMA 406 (922)
Q Consensus 331 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~---~~A-~~~~~~al~~~p~~~ 406 (922)
-..........+-+|..+...|+.++|...|+++.. +.+ .|-.++. .++|.. ... ...-...+..
T Consensus 339 ~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~--fYG~LAa--~~Lg~~~~~~~~~~~~~~~~~~~----- 407 (644)
T PRK11619 339 PMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRG--FYPMVAA--QRLGEEYPLKIDKAPKPDSALTQ----- 407 (644)
T ss_pred CHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--cHHHHHH--HHcCCCCCCCCCCCCchhhhhcc-----
Confidence 554455667778888888888999999999988754 222 1112211 112221 000 0000011111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHh
Q 002431 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRD 460 (922)
Q Consensus 407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 460 (922)
.-....+..+...|+...|...+..++.. . ++.....+.......|.+.-+.
T Consensus 408 ~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~-~~~~~~~la~~A~~~g~~~~ai 459 (644)
T PRK11619 408 GPEMARVRELMYWNMDNTARSEWANLVAS-R-SKTEQAQLARYAFNQQWWDLSV 459 (644)
T ss_pred ChHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHCCCHHHHH
Confidence 12355677888999999999999988875 2 3344444444444555444443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.52 Score=46.20 Aligned_cols=17 Identities=6% Similarity=0.300 Sum_probs=12.2
Q ss_pred cccceeeeecCCCCCCh
Q 002431 534 LRRLRVGYVSSDFGNHP 550 (922)
Q Consensus 534 ~~~~rig~~s~~~~~h~ 550 (922)
-.+++|-|+|..++-.+
T Consensus 362 Yt~i~Ipfis~~Lnv~~ 378 (440)
T KOG1464|consen 362 YTNIGIPFISKELNVPE 378 (440)
T ss_pred ccccCchhhHhhcCCCH
Confidence 35678888888777654
|
|
| >PRK10422 lipopolysaccharide core biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.058 Score=58.58 Aligned_cols=116 Identities=14% Similarity=0.071 Sum_probs=66.9
Q ss_pred CCCCCCcEEEEecCC-CCCCCH-HHHHHHHHHHhhCCCeEEEEecCChhhH-HHHHHHHHHcCCCCCceEEcCCCCcHHH
Q 002431 707 YGLPEDKFIFACFNQ-LYKMDP-EIFNTWCNILRRVPNSALWLLRFPAAGE-MRLRAYAVAQGVQPDQIIFTDVAMKQEH 783 (922)
Q Consensus 707 ~~l~~~~~~~~~~~~-~~K~~~-~~~~~~~~il~~~p~~~l~~~~~~~~~~-~~l~~~~~~~g~~~~rv~f~~~~~~~~~ 783 (922)
+|++...+++....+ ..|.-| +-+....+.+.. .+..+++.|.+...+ ...++..+...- ...+.+.|.++-.+.
T Consensus 179 ~~~~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~-~~~~vvl~ggp~e~e~~~~~~i~~~~~~-~~~~~l~g~~sL~el 256 (352)
T PRK10422 179 LGVTQNYVVIQPTARQIFKCWDNDKFSAVIDALQA-RGYEVVLTSGPDKDDLACVNEIAQGCQT-PPVTALAGKTTFPEL 256 (352)
T ss_pred cCCCCCeEEEecCCCccccCCCHHHHHHHHHHHHH-CCCeEEEEcCCChHHHHHHHHHHHhcCC-CccccccCCCCHHHH
Confidence 345555555554433 456643 222233333332 256777776543212 222333322221 234668899899999
Q ss_pred HHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 784 IRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 784 ~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
.++++.+|+||.. -+|++=+ |-++|+|||++-|++...+.+
T Consensus 257 ~ali~~a~l~v~n--DSGp~Hl--AaA~g~P~v~lfGpt~p~~~~ 297 (352)
T PRK10422 257 GALIDHAQLFIGV--DSAPAHI--AAAVNTPLICLFGATDHIFWR 297 (352)
T ss_pred HHHHHhCCEEEec--CCHHHHH--HHHcCCCEEEEECCCCccccC
Confidence 9999999999933 3343333 557899999999988776654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.011 Score=38.12 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 408 AHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 408 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
+++.+|.++.+.|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666666654
|
|
| >PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.05 Score=59.01 Aligned_cols=111 Identities=7% Similarity=-0.097 Sum_probs=66.0
Q ss_pred CcEEEEecCC--CCCCCH-HHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCC-CCc-eEEcCCCCcHHHHHh
Q 002431 712 DKFIFACFNQ--LYKMDP-EIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQ-PDQ-IIFTDVAMKQEHIRR 786 (922)
Q Consensus 712 ~~~~~~~~~~--~~K~~~-~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~-~~r-v~f~~~~~~~~~~~~ 786 (922)
..++|...++ ..|.-| +-+....+-+. ..+.++++.|.+.. ++..++..+..+-. ..+ +.+.|..+-.+..++
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~-~~~~~vvl~Gg~~e-~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~al 258 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLI-DEGYQVVLFGSAKD-HEAGNEILAALNTEQQAWCRNLAGETQLEQAVIL 258 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHH-HCCCeEEEEeCHHh-HHHHHHHHHhcccccccceeeccCCCCHHHHHHH
Confidence 3455555443 456633 33333333233 23567777775433 44444444433211 112 567888888999999
Q ss_pred ccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 787 SSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 787 ~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
++.+|+++-. -+|++= =|-++|+|+|++=|++...+.|
T Consensus 259 i~~a~l~I~n--DTGp~H--lAaA~g~P~valfGpt~p~~~~ 296 (348)
T PRK10916 259 IAACKAIVTN--DSGLMH--VAAALNRPLVALYGPSSPDFTP 296 (348)
T ss_pred HHhCCEEEec--CChHHH--HHHHhCCCEEEEECCCCccccC
Confidence 9999999832 233222 3778999999999987665554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.92 Score=41.55 Aligned_cols=133 Identities=16% Similarity=0.142 Sum_probs=83.5
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC-H-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----hhHHHhHHHHHHHcCCh
Q 002431 180 MESGDLNRALQYYKEAVKLKPTF-P-DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQA 252 (922)
Q Consensus 180 ~~~g~~~~A~~~~~~~l~~~p~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~ 252 (922)
.+.++.++|+..|...-+.+-.. + -+....+.+....|+...|+..|.++-...+. ..+...-+.++...|.|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34566677777777665544332 2 24566677777778888888888877665443 23344555666777777
Q ss_pred HHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHH
Q 002431 253 DMAILYYKQAI-GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 313 (922)
Q Consensus 253 ~~A~~~~~~~l-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 313 (922)
++.....+.+- ..+|-...+...||..-.+.|++.+|.+.|.++.. +...+....+.+.+
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 77666665544 33455555667777777888888888888877665 43444444444433
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.43 Score=46.74 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002431 183 GDLNRALQYYKEAVKLKPTFPD----AYLNLGNVYKALGMPQEAIMCYQRAVQ 231 (922)
Q Consensus 183 g~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 231 (922)
.+.++|+..|++.+++.+...+ ++-.+..++++++++++....|.+++.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3566666666666666554332 444555666666666666666665543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0079 Score=39.85 Aligned_cols=27 Identities=44% Similarity=0.647 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002431 409 HANLASAYKDSGHVEAAIKSYKQALLL 435 (922)
Q Consensus 409 ~~~la~~~~~~g~~~~A~~~~~~al~~ 435 (922)
+.+||.+|.+.|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666666666666666664433
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.58 Score=50.34 Aligned_cols=58 Identities=19% Similarity=0.029 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH-HHHcCChHHHHHHHHH
Q 002431 171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPT-FPDAYLNLGNV-YKALGMPQEAIMCYQR 228 (922)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~-~~~~g~~~~A~~~~~~ 228 (922)
+.......+.+.|-+..|.++.+-++.++|. ++-........ ..+.++++--++.++.
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 3344555666666677777777666666666 55433333333 3344555444444443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.39 Score=52.76 Aligned_cols=212 Identities=15% Similarity=0.096 Sum_probs=110.0
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhh------------CC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----c
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYER------------NP-LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR----F 66 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~------------~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~ 66 (922)
.+|...+..=+++-|.+.|.++-.. .. ....--..++..+.-.|++.+|.++|.+.-..+.. .
T Consensus 590 ~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyT 669 (1081)
T KOG1538|consen 590 ELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYT 669 (1081)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHH
Confidence 3555556666666666666554211 10 11122355677777788888888887653211100 0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHH----------HHHHHhCCCC
Q 002431 67 AECYGNMANAWKEKGDIDLAIRYYLVAIEL--RPNFADAWSNLASAYMRKGRLNEAAQCC----------RQALALNPLL 134 (922)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~----------~~~l~~~p~~ 134 (922)
.--.+..++-+...|.-++-..+.++-.+- +-+.+. ..+.++...|+.++|+.+. +-.-+++...
T Consensus 670 DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~e 746 (1081)
T KOG1538|consen 670 DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAE 746 (1081)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhh
Confidence 011233444555555554444444332211 111111 2355666677777766543 1222233444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002431 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214 (922)
Q Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 214 (922)
.+.+...+..+.+...+.-|.++|.++-.. ..+.++....+++.+|..+.++.-+.. +++|+..++.+.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhh
Confidence 455556666666666666666666554321 234455666677777776665543322 335666677777
Q ss_pred HcCChHHHHHHHHHH
Q 002431 215 ALGMPQEAIMCYQRA 229 (922)
Q Consensus 215 ~~g~~~~A~~~~~~~ 229 (922)
...++++|.+.|.++
T Consensus 816 E~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhhhHHHHHHHHHHh
Confidence 777777776666544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.51 Score=43.21 Aligned_cols=82 Identities=26% Similarity=0.138 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 115 (922)
+......-...++.+++..++..+--..|+.+..-..-|..+...|++.+|+.+++.+.+..|..+.+--.++.|+...|
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 33444444555555555555555555556655555555566666666666666666655555555555555555555555
Q ss_pred CH
Q 002431 116 RL 117 (922)
Q Consensus 116 ~~ 117 (922)
+.
T Consensus 93 D~ 94 (160)
T PF09613_consen 93 DP 94 (160)
T ss_pred Ch
Confidence 43
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.65 E-value=4.1 Score=44.13 Aligned_cols=90 Identities=13% Similarity=0.065 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q 002431 52 CIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR-LNEAAQCCRQALAL 130 (922)
Q Consensus 52 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~ 130 (922)
-...|+.+....+.+...|........+.+.+.+--..|.+++..+|++++.|..-+.-.+..+. .+.|..++.+.++.
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 34556666666666777777776666666667777777777777777777777776666665554 67777777777777
Q ss_pred CCCCHHHHHHH
Q 002431 131 NPLLVDAHSNL 141 (922)
Q Consensus 131 ~p~~~~~~~~l 141 (922)
+|+.+..|...
T Consensus 170 npdsp~Lw~ey 180 (568)
T KOG2396|consen 170 NPDSPKLWKEY 180 (568)
T ss_pred CCCChHHHHHH
Confidence 77777665443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=95.61 E-value=4.2 Score=44.03 Aligned_cols=230 Identities=13% Similarity=0.051 Sum_probs=124.7
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002431 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGN 143 (922)
Q Consensus 64 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 143 (922)
|-+..++..+..++...-+..-......+++.... +..++..++++|... ..++-..++++..+.+-++...-..++.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 33444555555555555555666666666666543 355667777777666 4455566666666666666665566666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 002431 144 LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 223 (922)
Q Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 223 (922)
.|.+ ++.+.+...|.+++...-. ..+...-.+.+++....-+++.+..+.+
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~--------------~~q~~~i~evWeKL~~~i~dD~D~fl~l-------------- 191 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIP--------------RRQNAAIKEVWEKLPELIGDDKDFFLRL-------------- 191 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcc--------------hhhhhhHHHHHHHHHHhccccHHHHHHH--------------
Confidence 6555 6666666666666543111 1112222344455544444444332222
Q ss_pred HHHHHHHhhCCC---hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002431 224 MCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300 (922)
Q Consensus 224 ~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 300 (922)
..++...... ..++..+-.-|....++++|++.+...++.+..+..+.-.+...+...-+ +
T Consensus 192 --~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~--------------~ 255 (711)
T COG1747 192 --QKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYR--------------G 255 (711)
T ss_pred --HHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhc--------------c
Confidence 1222111111 23333344556677888999999988888888877776666655543110 1
Q ss_pred CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchh
Q 002431 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP 340 (922)
Q Consensus 301 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 340 (922)
..+.+-|....++-..-.++.++..-|++.+.....+-..
T Consensus 256 ~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnFVf 295 (711)
T COG1747 256 HSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNFVF 295 (711)
T ss_pred chhHHHHHHhcchhhccccHHHHHHHHHHHheeccCceEE
Confidence 1112222233333334456777777777777776665433
|
|
| >PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.21 Score=59.93 Aligned_cols=190 Identities=13% Similarity=0.056 Sum_probs=115.7
Q ss_pred CcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCCe----EEEEecCChh----hHHHHH----HHHH----H
Q 002431 703 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPNS----ALWLLRFPAA----GEMRLR----AYAV----A 764 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~----~l~~~~~~~~----~~~~l~----~~~~----~ 764 (922)
+|++++- ++..++.++-|+. |+++.=+.+|.++|++.|.- +|+.+..++- .-+.++ +.+. +
T Consensus 330 l~~~~~~-~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~ 408 (854)
T PLN02205 330 LIKQFCD-QDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINET 408 (854)
T ss_pred HHHHhcc-CCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 4544431 2457888999875 99999999999999999964 5555543321 012222 2222 2
Q ss_pred cCC-CCCceEEcC-CCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeee------------ecCCcchhhhH-
Q 002431 765 QGV-QPDQIIFTD-VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMIT------------LPLEKMATRVA- 828 (922)
Q Consensus 765 ~g~-~~~rv~f~~-~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~------------~~~~~~~~r~~- 828 (922)
.|- +-.-|++.. .++..+..++|+.+||+|-|+.-.| ..+.-|-.+|-.+--. ..|.-.-|...
T Consensus 409 fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaG 488 (854)
T PLN02205 409 FGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIG 488 (854)
T ss_pred cCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeeccc
Confidence 342 112366664 5788999999999999999999888 8899999887542100 01111122222
Q ss_pred HHHHHhcCCCCccc--cCCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHH
Q 002431 829 GSLCLATGLGEEMI--VNSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLH 900 (922)
Q Consensus 829 ~~~~~~~g~~~~~i--~~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~ 900 (922)
++- -|++.++ ..|.++.++++.+-++ .++.++.--+.+++.+.+ .|...+++.+-...+.+++.+
T Consensus 489 aa~----~L~~Ai~VNP~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v~~---~d~~~W~~~fl~~l~~~~~~~ 556 (854)
T PLN02205 489 CSP----SLSGAIRVNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRYVST---HDVGYWARSFLQDLERTCRDH 556 (854)
T ss_pred hhH----HhCcCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHHHH
Confidence 111 1112122 2588888776655554 444444444455565543 788898888877777766543
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.53 Score=51.27 Aligned_cols=90 Identities=11% Similarity=-0.055 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 17 QALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR----FAECYGNMANAWKEKGDIDLAIRYYLV 92 (922)
Q Consensus 17 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~ 92 (922)
...+.+.......|+++...+..+..+...|+.+.|+..++..++ +. ..-.++.+|.++.-+.+|..|-..+..
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334444444555666666666667777777776666666666655 22 133556666666667777777777776
Q ss_pred HHhcCCCcHHHHHHHH
Q 002431 93 AIELRPNFADAWSNLA 108 (922)
Q Consensus 93 al~~~p~~~~~~~~la 108 (922)
..+.+.-..-.|..++
T Consensus 329 L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 329 LRDESDWSHAFYTYFA 344 (546)
T ss_pred HHhhhhhhHHHHHHHH
Confidence 6665444333333333
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.03 Score=36.11 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
+++.+|.++.+.|++++|++.|++.++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5666777777777777777777777776665
|
|
| >PRK02797 4-alpha-L-fucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.37 Score=49.05 Aligned_cols=162 Identities=12% Similarity=0.075 Sum_probs=98.3
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEE-ecCChhh---HHHHHHHHHHcCCCCCceEE-cCCCCcHHHHHhcc
Q 002431 714 FIFACFNQLYKMDPEIFNTWCNILRRVPNSALWL-LRFPAAG---EMRLRAYAVAQGVQPDQIIF-TDVAMKQEHIRRSS 788 (922)
Q Consensus 714 ~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~-~~~~~~~---~~~l~~~~~~~g~~~~rv~f-~~~~~~~~~~~~~~ 788 (922)
+.+|.-+-+.-+|-+.++...+.. ..+.++++ +|.|+.. .+++++...++.- ++++.. ...+|.++|+++++
T Consensus 149 IlvGNSgd~SN~Hie~L~~l~~~~--~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~-~~~~~~L~e~l~f~eYl~lL~ 225 (322)
T PRK02797 149 ILVGNSGDRSNRHIEALRALHQQF--GDNVKIIVPMGYPANNQAYIEEVRQAGLALFG-AENFQILTEKLPFDDYLALLR 225 (322)
T ss_pred EEEeCCCCCcccHHHHHHHHHHHh--CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcC-cccEEehhhhCCHHHHHHHHH
Confidence 456666666777877776655543 45566655 3553222 3456666666654 366555 55889999999999
Q ss_pred CCcEEecCCC-CCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 002431 789 LADLFLDTPL-CNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALT 867 (922)
Q Consensus 789 ~~dv~l~~~~-~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~ 867 (922)
.||+....+. -.|--|++=.+.+|+|||.....++- ..+...|+|- +...+ ..-...+ .+..+++.
T Consensus 226 ~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n~fw-----qdl~e~gv~V-lf~~d--~L~~~~v-----~e~~rql~ 292 (322)
T PRK02797 226 QCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDNPFW-----QDLTEQGLPV-LFTGD--DLDEDIV-----REAQRQLA 292 (322)
T ss_pred hCCEEEEeechhhHHhHHHHHHHCCCcEEEecCCchH-----HHHHhCCCeE-EecCC--cccHHHH-----HHHHHHHH
Confidence 9999998875 45556677899999999976655443 3466778876 43322 2211111 11222223
Q ss_pred HHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 868 NKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
..=++.+ .|+.+.+++.+.+++..
T Consensus 293 ~~dk~~I----~Ff~pn~~~~W~~~l~~ 316 (322)
T PRK02797 293 SVDKNII----AFFSPNYLQGWRNALAI 316 (322)
T ss_pred hhCccee----eecCHhHHHHHHHHHHH
Confidence 3223332 28888877666666654
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.062 Score=53.34 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=59.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002431 379 GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (922)
Q Consensus 379 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (922)
+.-..+.|+.++|...|+.++.+.|++++++..+|......++.-+|-.+|-+++.+.|.+.+++.+-
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 33456778999999999999999999999999999999999999999999999999999998887654
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.047 Score=54.18 Aligned_cols=68 Identities=25% Similarity=0.386 Sum_probs=52.0
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 002431 347 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414 (922)
Q Consensus 347 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 414 (922)
-..+.|+.++|..+|+.++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.++
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34567788888888888888888888888888888777778888888888888888877777665543
|
|
| >COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.53 Score=51.77 Aligned_cols=169 Identities=20% Similarity=0.203 Sum_probs=105.2
Q ss_pred cEEEEecCCCC--CCCHHHHHHHHHHHhhCCC----eEEEEecCChhhH----HHHHHHHH--------HcCC-CCCceE
Q 002431 713 KFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPAAGE----MRLRAYAV--------AQGV-QPDQII 773 (922)
Q Consensus 713 ~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~----~~l~~~~~--------~~g~-~~~rv~ 773 (922)
..++.++-|+. |+.+.=+.+|.++|...|. ++|+-++.++... .+++.... +.|- +-.=|.
T Consensus 282 ~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~ 361 (486)
T COG0380 282 KKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVH 361 (486)
T ss_pred ceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeE
Confidence 56777888774 9999999999999999885 4555555432111 12222222 2343 111255
Q ss_pred EcC-CCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCC----CeeeecCCcchhhhHHHHHHhcCCCCcccc--CC
Q 002431 774 FTD-VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGL----PMITLPLEKMATRVAGSLCLATGLGEEMIV--NS 845 (922)
Q Consensus 774 f~~-~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~----Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~ 845 (922)
|.- ..++.+++++|..+||++-|+.-.| .++..|-.++-- |.|...-..-++ .| .+.+++ .|
T Consensus 362 ~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~-----~L-----~~AliVNP~d 431 (486)
T COG0380 362 YLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAAS-----EL-----RDALIVNPWD 431 (486)
T ss_pred EEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCCcEEEeccccchh-----hh-----ccCEeECCCC
Confidence 555 4788999999999999999999888 888888887633 333222111111 11 111332 36
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 846 MKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 846 ~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
.++.++++.+-++ .++.+.+.-+.+.+.+.+ .|...++..+.....
T Consensus 432 ~~~va~ai~~AL~m~~eEr~~r~~~~~~~v~~---~d~~~W~~~fl~~la 478 (486)
T COG0380 432 TKEVADAIKRALTMSLEERKERHEKLLKQVLT---HDVARWANSFLDDLA 478 (486)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHH
Confidence 6666555444333 666666656666666654 888899888666554
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.07 E-value=4.1 Score=40.61 Aligned_cols=196 Identities=13% Similarity=0.058 Sum_probs=101.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHH
Q 002431 37 LLLGAIYYQLHDYDMCIARNEEALRLEPR--------FAECYGNMANAWKEKGDIDLAIRYYLVAIEL-----RPNFADA 103 (922)
Q Consensus 37 ~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~ 103 (922)
..+++-..+.+++++|+..|.+.+..... ...+...++..|...|++..-.+.....-+. .|.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 55677788889999999999999876322 2456778899999999876544444332221 1222222
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCcHH
Q 002431 104 WSNLASAYM-RKGRLNEAAQCCRQALALNPLLV------DAHSNLGNLMKAQGLVQEAYSCYLEALRI------QPTFAI 170 (922)
Q Consensus 104 ~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 170 (922)
...+...+- ....++.-++++...++.....- ..-..++.++++.|+|.+|+......+.. .+.-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 222222211 12334444444444443221111 12234555666677777776665544331 233334
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHhh
Q 002431 171 AWSNLAGLFMESGDLNRALQYYKEAVKL-----KPTFPDAYL--NLGNVYKALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (922)
.+..-..+|.+..+..++...+..+... .|....+.. .-|...+...+|..|..+|-++++-
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 4445555666666666555555544332 122222111 1233344455666666666666653
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.21 Score=50.90 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=50.2
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHH
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 410 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 410 (922)
..++-.+|.+.++++.|+.+.+.++.+.|+++.-+..+|.+|.++|.+..|...++..++..|+++.+-.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3455566777777777777777777777777777777777777777777777777777777777665433
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.3 Score=41.31 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=40.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCcHHHHH
Q 002431 108 ASAYMRKGRLNEAAQCCRQALALNPLLV---DAHSNLGNLMKAQGL-----------VQEAYSCYLEALRIQPTFAIAWS 173 (922)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~ 173 (922)
+..++..|++-+|+++.+.++..++++. ..+...|.++.++.. .-.+++.|.++..+.|..+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 3344555555555555555555544433 222333333322111 12344445555555555555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 174 NLAGLFMESGDLNRALQYYKEAVK 197 (922)
Q Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~ 197 (922)
.+|.-+-....|+++..-.++.+.
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc
Confidence 555444444444444444444443
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.92 E-value=5.2 Score=41.06 Aligned_cols=195 Identities=17% Similarity=0.127 Sum_probs=98.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhh--CCCc--------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC--CcH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYER--NPLR--------TDNLLLLGAIYYQLHDYDMCIARNEEALRL---EP--RFA 67 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p--~~~ 67 (922)
++.++......++++++..+..++.. .|.+ ......++..+.+.|+.++-.......-.. -+ ..+
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 45677778888899999999999873 2222 345677888899998887766655544221 11 111
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C--CCC
Q 002431 68 ECYGNMANAWKE-KGDIDLAIRYYLVAIELRPNF------ADAWSNLASAYMRKGRLNEAAQCCRQALAL----N--PLL 134 (922)
Q Consensus 68 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~--p~~ 134 (922)
.....+...... .+..+.-+.+...+++..... ...-..++..|...++|.+|+......++. + +..
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL 167 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL 167 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence 112222222211 222333333443333321111 112234566666666676666665555432 1 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCcHHHHH--HHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRI-----QPTFAIAWS--NLAGLFMESGDLNRALQYYKEAVK 197 (922)
Q Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~--~la~~~~~~g~~~~A~~~~~~~l~ 197 (922)
.+++..-...|....+..+|...+..+-.. .|....+-. .-|.+++...+|..|..+|-++++
T Consensus 168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfE 237 (411)
T KOG1463|consen 168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFE 237 (411)
T ss_pred eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHc
Confidence 334445555566666666666555544332 121111111 112333444556666666665554
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.2 Score=41.37 Aligned_cols=63 Identities=22% Similarity=0.259 Sum_probs=33.9
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHhhcccC
Q 002431 392 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF--PEATCNLLHTLQCVC 454 (922)
Q Consensus 392 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~ 454 (922)
+..+++.++.+|++..+.+.++..+...|++++|++.+-.+++.++++ ..+...++......|
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 344556666666666666666666666666666666666666665544 344444444443333
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.85 E-value=12 Score=45.08 Aligned_cols=49 Identities=8% Similarity=0.001 Sum_probs=23.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002431 376 VNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431 (922)
Q Consensus 376 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 431 (922)
..++.-+..++++-+|.+.....+..- ......|++...+++|+....+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd~-------~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSDP-------EEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcCH-------HHHHHHHhhHhHHHHHHHHHHh
Confidence 445555556666666665555544321 1122334444455555554443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.5 Score=43.23 Aligned_cols=77 Identities=17% Similarity=0.076 Sum_probs=39.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 6 AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 6 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
...-...++.+++..++..+-...|+.++.-..-|..+...|+|.+|+.+|+.+....|..+.+--.++.|+...|+
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 33444445555555555555555555555555555555555555555555555555555555555555555544444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.1 Score=37.79 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=15.4
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNL 36 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 36 (922)
+.+|..+++.|+|++|.+..+.+++..|++.++.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3444444555555555555555555555444443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.33 Score=40.09 Aligned_cols=64 Identities=14% Similarity=0.212 Sum_probs=37.1
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCC
Q 002431 19 LEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF--AECYGNMANAWKEKGD 82 (922)
Q Consensus 19 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 82 (922)
+..+++.+..+|++..+.+.++..+...|++++|++.+-.+++.++.. ..+...+..++...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445566666777777777777777777777777777777777666543 3344444444444443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.19 Score=51.13 Aligned_cols=70 Identities=11% Similarity=0.023 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
.+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|..-++..++..|+++.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 5667788899999999999999999999999999999999999999999999999999999999998764
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.061 Score=35.58 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Q 002431 375 LVNRGNTYKEIGRVTDAIQDYIRAI 399 (922)
Q Consensus 375 ~~~l~~~~~~~g~~~~A~~~~~~al 399 (922)
+..+|.+|.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666644
|
|
| >KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.67 Score=53.22 Aligned_cols=147 Identities=13% Similarity=0.239 Sum_probs=90.7
Q ss_pred cEEEEecCCCC---CCCHHHHHHHHHHHhhCCCeE-EEEecCChhhHHHHHHHHHHcCCC---CCceEEcCCCCcHHHHH
Q 002431 713 KFIFACFNQLY---KMDPEIFNTWCNILRRVPNSA-LWLLRFPAAGEMRLRAYAVAQGVQ---PDQIIFTDVAMKQEHIR 785 (922)
Q Consensus 713 ~~~~~~~~~~~---K~~~~~~~~~~~il~~~p~~~-l~~~~~~~~~~~~l~~~~~~~g~~---~~rv~f~~~~~~~~~~~ 785 (922)
.+||.||+... ..........+..+...|+.. +|....... .. + ..|+. ...|.+.++.|..+.+.
T Consensus 278 ~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~-~~-~-----~~~~~~~~~~nV~~~~W~PQ~~lll 350 (496)
T KOG1192|consen 278 SVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDS-IY-F-----PEGLPNRGRGNVVLSKWAPQNDLLL 350 (496)
T ss_pred CeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcc-hh-h-----hhcCCCCCcCceEEecCCCcHHHhc
Confidence 58888888776 789999999888888887765 566654322 11 1 12341 24599999999998773
Q ss_pred hccCCcEEecCCCCCChhHHHHHHHcCCCeeeec--CCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHhcCHH
Q 002431 786 RSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP--LEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLALDRQ 861 (922)
Q Consensus 786 ~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~--~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~~d~~ 861 (922)
....+..|+ .++|=++++||++.|||+|+.+ |+.+.. +..+...|....++-. +.++...++..+..+++
T Consensus 351 ~H~~v~~Fv---THgG~nSt~E~~~~GvP~v~~Plf~DQ~~N---a~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~~ 424 (496)
T KOG1192|consen 351 DHPAVGGFV---THGGWNSTLESIYSGVPMVCVPLFGDQPLN---ARLLVRHGGGGVLDKRDLVSEELLEAIKEILENEE 424 (496)
T ss_pred CCCcCcEEE---ECCcccHHHHHHhcCCceecCCccccchhH---HHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcChH
Confidence 344455555 4677677799999999999654 443322 2223333332201111 22235666677777777
Q ss_pred HHHHHHHHHHh
Q 002431 862 KLQALTNKLKS 872 (922)
Q Consensus 862 ~~~~~~~~~~~ 872 (922)
.....++-...
T Consensus 425 y~~~~~~l~~~ 435 (496)
T KOG1192|consen 425 YKEAAKRLSEI 435 (496)
T ss_pred HHHHHHHHHHH
Confidence 66665554443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.16 Score=36.82 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002431 71 GNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102 (922)
Q Consensus 71 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 102 (922)
+.+|..+++.|+|++|.++.+.+++..|++.+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 34444444444444444444444444444433
|
|
| >PRK14089 ipid-A-disaccharide synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.29 Score=52.19 Aligned_cols=78 Identities=10% Similarity=0.052 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChh
Q 002431 724 KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHT 803 (922)
Q Consensus 724 K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~ 803 (922)
+..|.+++++.++.++. .++++.+... .+.+++...+. ..+.|.+ +-...++.+|+++ ...||
T Consensus 183 ~llP~~~~aa~~L~~~~--~~~~i~~a~~--~~~i~~~~~~~----~~~~~~~-----~~~~~m~~aDlal----~~SGT 245 (347)
T PRK14089 183 RLMPIFKELAKKLEGKE--KILVVPSFFK--GKDLKEIYGDI----SEFEISY-----DTHKALLEAEFAF----ICSGT 245 (347)
T ss_pred HHHHHHHHHHHHHhhcC--cEEEEeCCCc--HHHHHHHHhcC----CCcEEec-----cHHHHHHhhhHHH----hcCcH
Confidence 66788888888877653 5566655432 35555544332 1334443 2235678899988 55688
Q ss_pred HHHHHHHcCCCeeee
Q 002431 804 TGTDILWAGLPMITL 818 (922)
Q Consensus 804 t~~eal~~g~Pvv~~ 818 (922)
+|+|++.+|+|.|..
T Consensus 246 ~TLE~al~g~P~Vv~ 260 (347)
T PRK14089 246 ATLEAALIGTPFVLA 260 (347)
T ss_pred HHHHHHHhCCCEEEE
Confidence 888999999998863
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.62 E-value=11 Score=43.54 Aligned_cols=412 Identities=12% Similarity=0.038 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---HcCCHHHHHHHHH
Q 002431 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWK---EKGDIDLAIRYYL 91 (922)
Q Consensus 15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~ 91 (922)
-++=+..+++-+..++.+......|..++...|++++-...-.++.+..|..+..|.....-.. ..++-.++...|+
T Consensus 95 ~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 95 GNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFE 174 (881)
T ss_pred chhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 3444566666677788888888999999999999998888888888888888888776655433 3467788899999
Q ss_pred HHHhcCCCcHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 92 VAIELRPNFADAWSNLASAY-------MRKGRLNEAAQCCRQALALNP-------LLVDAHSNLGNLMKAQGLVQEAYSC 157 (922)
Q Consensus 92 ~al~~~p~~~~~~~~la~~~-------~~~g~~~~A~~~~~~~l~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~ 157 (922)
+++... +++..|...+... ...++++.-..+|.+++..-. .....+..+-..+...-..++-+.+
T Consensus 175 kal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~ 253 (881)
T KOG0128|consen 175 KALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIAL 253 (881)
T ss_pred HHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 998643 3344454444433 445678888888888876421 2333455555555555555667777
Q ss_pred HHHHHhhCCCcHH----HHHHHH--H-HHHHcCCHHHHHHHHHH-------HHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 002431 158 YLEALRIQPTFAI----AWSNLA--G-LFMESGDLNRALQYYKE-------AVKLKPTFPDAYLNLGNVYKALGMPQEAI 223 (922)
Q Consensus 158 ~~~al~~~p~~~~----~~~~la--~-~~~~~g~~~~A~~~~~~-------~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 223 (922)
+...+... -+.. .|.... . ......+++.|.+-+.+ .+...+.....+..+.......|....-.
T Consensus 254 ~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~ 332 (881)
T KOG0128|consen 254 FVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQ 332 (881)
T ss_pred HHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHH
Confidence 77666543 2211 111111 1 11223445555444333 33334444456777777788888888888
Q ss_pred HHHHHHHhhCCC-hhHHHhHHHHH-HHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC
Q 002431 224 MCYQRAVQTRPN-AIAFGNLASTY-YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR-VDEAIQCYNQCLSLQ 300 (922)
Q Consensus 224 ~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~ 300 (922)
..++++....+. ...|...+... ...+-.+.+...+.+++...|-...+|...-..+.+.+. ...-...+.+.+...
T Consensus 333 l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~ 412 (881)
T KOG0128|consen 333 LIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMT 412 (881)
T ss_pred HHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH
Confidence 888888776554 44444333322 123334445556666666666666555443333333222 222223333332221
Q ss_pred CCChHHHHhHHHHHHHc-------------CChhHHHHHHHHHHhc-CCCCchhhhhHHHHHH-HcCCHHHHHHHHHHHH
Q 002431 301 PSHPQALTNLGNIYMEW-------------NMLPAAASYYKATLAV-TTGLSAPFNNLAVIYK-QQGNYADAISCYNEVL 365 (922)
Q Consensus 301 p~~~~~~~~la~~~~~~-------------~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al 365 (922)
- ..++........+ ..+..|...|...... .......+...|..+. .+++.+.++.+++..+
T Consensus 413 ~---~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~im 489 (881)
T KOG0128|consen 413 V---ELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIM 489 (881)
T ss_pred H---HHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccc
Confidence 0 0111111111111 1233444444443333 1122233444555544 5678999999999888
Q ss_pred ccCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhC--CCc-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002431 366 RIDPLAAD-GLVNRGNTYKEIGRVTDAIQDYIRAITIR--PTM-AEAHANLASAYKDSGHVEAAIKSYKQ 431 (922)
Q Consensus 366 ~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 431 (922)
...-.+.. .|+.....-...|+...+...+++|+... |++ -.++..+-......|.++.....-++
T Consensus 490 ty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~ 559 (881)
T KOG0128|consen 490 TYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEK 559 (881)
T ss_pred cCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHh
Confidence 77666555 78888888888899999999888888653 432 23444444555556666665554443
|
|
| >PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.057 Score=51.38 Aligned_cols=94 Identities=19% Similarity=0.168 Sum_probs=60.3
Q ss_pred CceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcc---hhhhHHHHHHhcCCCCcccc---
Q 002431 770 DQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM---ATRVAGSLCLATGLGEEMIV--- 843 (922)
Q Consensus 770 ~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~---~~r~~~~~~~~~g~~~~~i~--- 843 (922)
.+|.+.++.+ +...++..+|+++ ..+|+.|+.|++++|+|.|..+-... ....-+..+...|... .+.
T Consensus 55 ~~v~~~~~~~--~m~~~m~~aDlvI---s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~-~~~~~~ 128 (167)
T PF04101_consen 55 PNVKVFGFVD--NMAELMAAADLVI---SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAI-MLDESE 128 (167)
T ss_dssp CCCEEECSSS--SHHHHHHHHSEEE---ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCC-CSECCC
T ss_pred CcEEEEechh--hHHHHHHHcCEEE---eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCcc-ccCccc
Confidence 5789999866 3444567799988 34667899999999999998776651 2222334566667655 443
Q ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHH
Q 002431 844 NSMKEYEERAVSLALDRQKLQALTNK 869 (922)
Q Consensus 844 ~~~~~~~~~~~~l~~d~~~~~~~~~~ 869 (922)
.+++.+.+.+..+..++..+..+...
T Consensus 129 ~~~~~L~~~i~~l~~~~~~~~~~~~~ 154 (167)
T PF04101_consen 129 LNPEELAEAIEELLSDPEKLKEMAKA 154 (167)
T ss_dssp -SCCCHHHHHHCHCCCHH-SHHHCCC
T ss_pred CCHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 24667888889998888876554443
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.52 E-value=1.3 Score=39.75 Aligned_cols=73 Identities=16% Similarity=0.057 Sum_probs=36.3
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 10 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
...++.+++..++..+-...|+.++.-..-|.++...|+|.+|+.+|+...+..+..+...-.++.|+.-+|+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 3345555555555555445555555555555555555555555555555544444444444444444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.51 E-value=12 Score=43.38 Aligned_cols=246 Identities=11% Similarity=0.081 Sum_probs=134.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 6 AHQMYKSGSYKQALEHSNSVYERNPL-RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID 84 (922)
Q Consensus 6 a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 84 (922)
...+++..-|+-|+.+.+.-- .++. -.......|.-++..|++++|...|-+.+..-.... ...-|.......
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~-----Vi~kfLdaq~Ik 414 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE-----VIKKFLDAQRIK 414 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH-----HHHHhcCHHHHH
Confidence 456778888888888776532 2222 245667788999999999999999998876432211 111223333444
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164 (922)
Q Consensus 85 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (922)
+-..+++...+..-.+.+--..|..+|.+.++.++-.+..++.- .+.-.. -.-..-.++.+.+-.++|..+-.+.-.
T Consensus 415 nLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~f-d~e~al~Ilr~snyl~~a~~LA~k~~~- 491 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFF-DVETALEILRKSNYLDEAELLATKFKK- 491 (933)
T ss_pred HHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceee-eHHHHHHHHHHhChHHHHHHHHHHhcc-
Confidence 45556666666555555566778899999999887766655432 110000 011222445555555666554433221
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-C--hhHH-
Q 002431 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-N--AIAF- 239 (922)
Q Consensus 165 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~--~~~~- 239 (922)
+.. .+-.++...++|++|+.++..+ .|.. .......|..+.. ..+++-...+-+...... . ....
T Consensus 492 ---he~---vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t~~~~~~~~~~~s 561 (933)
T KOG2114|consen 492 ---HEW---VLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLE-HDPEETMKILIELITELNSQGKGKSLS 561 (933)
T ss_pred ---CHH---HHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHhhcCCCCCCchhh
Confidence 222 2334566778899999988764 2221 2234455555544 344555555444443211 1 1100
Q ss_pred ---HhHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 002431 240 ---GNLASTYYERGQADMAILYYKQAIGCDPRFL 270 (922)
Q Consensus 240 ---~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 270 (922)
...-.+..-.+++..-..+++.+.+..|+..
T Consensus 562 ~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~ 595 (933)
T KOG2114|consen 562 NIPDSIEFIGIFSQNYQILLNFLESMSEISPDSE 595 (933)
T ss_pred cCccchhheeeeccCHHHHHHHHHHHHhcCCCch
Confidence 1122223334556665566665665555544
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.18 Score=48.20 Aligned_cols=61 Identities=25% Similarity=0.351 Sum_probs=45.5
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 381 TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (922)
Q Consensus 381 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (922)
...+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3445677777777777777777777777777777777777777777778887777776543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.23 Score=35.75 Aligned_cols=45 Identities=24% Similarity=0.207 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHh
Q 002431 405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHT 449 (922)
Q Consensus 405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 449 (922)
+..+|..+...|.+.|++++|.++|+++.+.+-.+....++.+..
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 356788899999999999999999999999887766666665543
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.72 E-value=9.5 Score=39.27 Aligned_cols=57 Identities=9% Similarity=0.021 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--CCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 37 LLLGAIYYQLHDYDMCIARNEEALRL--EPR--------FAECYGNMANAWKEKGDIDLAIRYYLVA 93 (922)
Q Consensus 37 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a 93 (922)
...+......+++++++..+...+.. .+. .......++..|.+.|+.++-.......
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~ 74 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSL 74 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 45566666777788899999888874 222 1356778899999999888766655543
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.68 E-value=2.7 Score=46.46 Aligned_cols=131 Identities=21% Similarity=0.190 Sum_probs=85.2
Q ss_pred HHHHHHHHHhhCCCChHHHHh--HHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHH-HH
Q 002431 289 AIQCYNQCLSLQPSHPQALTN--LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE-VL 365 (922)
Q Consensus 289 A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al 365 (922)
++..+...+..++.+++.... +...+...+....+...+...+..+|++..+..+++......|....+...+.+ +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444456666654332 345555566666677777777777777777777777777666666655555555 66
Q ss_pred ccCCCCHHHHHHH------HHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Q 002431 366 RIDPLAADGLVNR------GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419 (922)
Q Consensus 366 ~~~p~~~~~~~~l------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 419 (922)
...|.+......+ +.....+|+..++....+++.+..|.++.+...+.....+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~ 189 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ 189 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence 6677776655444 77777778888888888888888888776666655554333
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.52 E-value=1.1 Score=38.24 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=36.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhC---CC---------chHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERN---PL---------RTDNLLLLGAIYYQLHDYDMCIARNEEAL 60 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~---p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al 60 (922)
+..|...++.|-|++|...+.++.+.. |. +..++-.|+..+..+|+|++++...++++
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 345666777888888888888877532 21 24455667777777777777776665554
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.45 E-value=1.6 Score=38.36 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=55.7
Q ss_pred chHHHHHHHHHHHhcCC---HHHHHHHHHHHHh-cCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHD---YDMCIARNEEALR-LEPR-FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS 105 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 105 (922)
+.+..+.++.++.+..+ ..+.+.+++..++ ..|. .-++.+.++..+++.++|++++++.+..++..|+|.++..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 46677888888877654 4567788888886 3443 4567788888888888888888888888888888776543
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.12 Score=32.53 Aligned_cols=31 Identities=39% Similarity=0.589 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 408 AHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 408 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
++..+|.++...|++++|...|+++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455555555555555555555555555443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.28 E-value=15 Score=40.13 Aligned_cols=96 Identities=11% Similarity=0.093 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 202 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALK 281 (922)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 281 (922)
+...+..+..++...-++.-...++.+++....+..++..++++|.+. ..++-...+++..+.+-++...-..++..|.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yE 143 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYE 143 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 334445555555555555555666666666666666666666666665 4455555666666555555544455555554
Q ss_pred HcCCHHHHHHHHHHHHhh
Q 002431 282 DVGRVDEAIQCYNQCLSL 299 (922)
Q Consensus 282 ~~g~~~~A~~~~~~al~~ 299 (922)
+ ++.+++..+|.+++..
T Consensus 144 k-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 144 K-IKKSKAAEFFGKALYR 160 (711)
T ss_pred H-hchhhHHHHHHHHHHH
Confidence 4 5556666666665543
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.82 Score=40.05 Aligned_cols=74 Identities=14% Similarity=0.063 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHh-hCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 370 LAADGLVNRGNTYKEIG---RVTDAIQDYIRAIT-IRPT-MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 370 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
-.....+++++++.+.. +..+.+.+++..++ -.|+ .-+..+.|+..+.+.|+|++|+++.+..++..|++..+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 44567888888888765 45678889999987 4444 356788899999999999999999999999999987654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.17 E-value=3.9 Score=36.88 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCC
Q 002431 351 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 421 (922)
Q Consensus 351 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 421 (922)
.++.+++..++..+--+.|+.++.-..-|+++...|++.+|+..++...+..+..+...-.++.|+.-+|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 44444444444444444444444444444444444455555444444444444444444444444444444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.16 E-value=3.1 Score=46.10 Aligned_cols=128 Identities=22% Similarity=0.259 Sum_probs=56.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 43 YYQLHDYDMCIARNEEALRLEPRF-AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121 (922)
Q Consensus 43 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 121 (922)
..-.++++++.+..... +.-|.- ......++..+.++|..+.|++.-+ +++..+.| ..+.|+.+.|.
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeL---Al~lg~L~~A~ 338 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFEL---ALQLGNLDIAL 338 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHH---HHHCT-HHHHH
T ss_pred HHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHH---HHhcCCHHHHH
Confidence 34455566655444311 111111 2234445555555666655555431 23333332 34566666665
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195 (922)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (922)
+..++ .++...|..+|.....+|+++-|.++|+++-. +..+..+|...|+.+.-.++.+.+
T Consensus 339 ~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 339 EIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 54332 23455666666666666666666666655322 334445555555554444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.96 E-value=12 Score=38.21 Aligned_cols=191 Identities=15% Similarity=0.110 Sum_probs=96.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChh
Q 002431 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP 321 (922)
Q Consensus 242 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 321 (922)
+.+...+..+..+-++.-..+++++|....+|..++.-- ..-..+|.++++++++.... .+...+.....|...
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~----~yr~sqq~qh~~~~~ 263 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET----IYRQSQQCQHQSPQH 263 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH----HHhhHHHHhhhccch
Confidence 334444555666666667777777777777776665432 23456677777777664321 111111111111111
Q ss_pred HHHHHHHHHHhcCCCCc--hhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002431 322 AAASYYKATLAVTTGLS--APFNNLAVIYKQQGNYADAISCYNEVLRIDPLA--ADGLVNRGNTYKEIGRVTDAIQDYIR 397 (922)
Q Consensus 322 ~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 397 (922)
+|. .+ ...+. .+...++.+..++|+..+|.+.++...+..|-. ...+-++...+....-|.+....+.+
T Consensus 264 da~------~r-RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 264 EAQ------LR-RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred hhh------hh-cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 01 11111 223456777777777888877777776665522 22344455555555444444444333
Q ss_pred HHhhC-CCcHHHHHHHHHH-------------HHhcCC---HHHHHHHHHHHHhcCCCCHHHHHH
Q 002431 398 AITIR-PTMAEAHANLASA-------------YKDSGH---VEAAIKSYKQALLLRPDFPEATCN 445 (922)
Q Consensus 398 al~~~-p~~~~~~~~la~~-------------~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~ 445 (922)
.-++. |....+.+.-+.. -.+.|- -..|++...++++.+|.-|..+..
T Consensus 337 YDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE 401 (556)
T KOG3807|consen 337 YDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLE 401 (556)
T ss_pred hccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHH
Confidence 33332 3333332222211 112221 235788889999999987765543
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=92.78 E-value=2.7 Score=35.91 Aligned_cols=85 Identities=21% Similarity=0.269 Sum_probs=46.1
Q ss_pred HcCCHHHHHHHHHHHHccCCC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-------hCCCcH----
Q 002431 350 QQGNYADAISCYNEVLRIDPL------------AADGLVNRGNTYKEIGRVTDAIQDYIRAIT-------IRPTMA---- 406 (922)
Q Consensus 350 ~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------~~p~~~---- 406 (922)
+.|-|++|...++++.+.... +.-.+..++..+..+|+|++++..-++++. ++.+..
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 445566666666666554211 122455566667777777766665555553 233332
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002431 407 EAHANLASAYKDSGHVEAAIKSYKQALL 434 (922)
Q Consensus 407 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 434 (922)
.+.++.+..+...|+.++|+..|+.+-+
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 2345566666677777777777766544
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 922 | ||||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 2e-98 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 1e-58 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 1e-78 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 1e-61 | ||
| 2vsy_A | 568 | Xanthomonas Campestris Putative Ogt (Xcc0866), Apos | 1e-60 | ||
| 2vsn_A | 568 | Structure And Topological Arrangement Of An O-Glcna | 2e-60 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 6e-25 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 6e-21 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 5e-19 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-14 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 1e-20 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 2e-19 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 1e-14 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 1e-14 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 1e-19 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 8e-18 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 1e-13 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 1e-15 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 6e-13 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 7e-12 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 4e-14 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 9e-12 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 2e-08 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 7e-08 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 8e-11 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 9e-08 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 2e-06 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 5e-10 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 7e-10 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 3e-06 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 9e-06 | ||
| 2q7f_A | 243 | Crystal Structure Of Yrrb: A Tpr Protein With An Un | 7e-10 | ||
| 1fch_A | 368 | Crystal Structure Of The Pts1 Complexed To The Tpr | 5e-09 | ||
| 1fch_A | 368 | Crystal Structure Of The Pts1 Complexed To The Tpr | 9e-05 | ||
| 2c0l_A | 305 | Tpr Domain Of Human Pex5p In Complex With Human Msc | 6e-09 | ||
| 2c0l_A | 305 | Tpr Domain Of Human Pex5p In Complex With Human Msc | 1e-04 | ||
| 2c0m_A | 319 | Apo Form Of The Tpr Domain Of The Pex5p Receptor Le | 6e-09 | ||
| 2c0m_A | 319 | Apo Form Of The Tpr Domain Of The Pex5p Receptor Le | 1e-04 | ||
| 3r9a_B | 328 | Human Alanine-Glyoxylate Aminotransferase In Comple | 6e-09 | ||
| 3r9a_B | 328 | Human Alanine-Glyoxylate Aminotransferase In Comple | 1e-04 | ||
| 2j9q_A | 328 | A Novel Conformation For The Tpr Domain Of Pex5p Le | 7e-09 | ||
| 2j9q_A | 328 | A Novel Conformation For The Tpr Domain Of Pex5p Le | 1e-04 | ||
| 4a1s_A | 411 | Crystallographic Structure Of The Pins:insc Complex | 3e-08 | ||
| 3sf4_A | 406 | Crystal Structure Of The Complex Between The Conser | 5e-06 | ||
| 3ro2_A | 338 | Structures Of The LgnNUMA COMPLEX Length = 338 | 6e-06 | ||
| 4g2v_A | 340 | Structure Complex Of Lgn Binding With Frmpd1 Length | 7e-06 | ||
| 2vyi_A | 131 | Crystal Structure Of The Tpr Domain Of Human Sgt Le | 8e-06 | ||
| 3uq3_A | 258 | Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = | 3e-05 | ||
| 4eqf_A | 365 | Trip8b-1a#206-567 Interacting With The Carboxy-Term | 3e-05 | ||
| 1elw_A | 118 | Crystal Structure Of The Tpr1 Domain Of Hop In Comp | 2e-04 | ||
| 2ho1_A | 252 | Functional Characterization Of Pseudomonas Aerugino | 2e-04 | ||
| 3ceq_A | 283 | The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc | 3e-04 | ||
| 3nf1_A | 311 | Crystal Structure Of The Tpr Domain Of Kinesin Ligh | 4e-04 | ||
| 2fi7_A | 265 | Crystal Structure Of Pilf : Functional Implication | 5e-04 | ||
| 3asg_A | 186 | Mama D159k Mutant 2 Length = 186 | 5e-04 | ||
| 2lni_A | 133 | Solution Nmr Structure Of Stress-Induced-Phosphopro | 6e-04 | ||
| 2pl2_A | 217 | Crystal Structure Of Ttc0263: A Thermophilic Tpr Pr | 7e-04 | ||
| 3edt_B | 283 | Crystal Structure Of The Mutated S328n Hklc2 Tpr Do | 8e-04 |
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Apostructure Length = 568 | Back alignment and structure |
|
| >pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac Transferase Homolog: Insight Into Molecular Control Of Intracellular Glycosylation Length = 568 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual Peptide- Binding Site Length = 243 | Back alignment and structure |
|
| >pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368 | Back alignment and structure |
|
| >pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368 | Back alignment and structure |
|
| >pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305 | Back alignment and structure |
|
| >pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305 | Back alignment and structure |
|
| >pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319 | Back alignment and structure |
|
| >pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319 | Back alignment and structure |
|
| >pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex Length = 411 | Back alignment and structure |
|
| >pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved Cell Polarity Proteins Inscuteable And Lgn Length = 406 | Back alignment and structure |
|
| >pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX Length = 338 | Back alignment and structure |
|
| >pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1 Length = 340 | Back alignment and structure |
|
| >pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131 | Back alignment and structure |
|
| >pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258 | Back alignment and structure |
|
| >pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal Seven Residues Of Hcn2 Length = 365 | Back alignment and structure |
|
| >pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118 | Back alignment and structure |
|
| >pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf Length = 252 | Back alignment and structure |
|
| >pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283 | Back alignment and structure |
|
| >pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311 | Back alignment and structure |
|
| >pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa Length = 265 | Back alignment and structure |
|
| >pdb|3ASG|A Chain A, Mama D159k Mutant 2 Length = 186 | Back alignment and structure |
|
| >pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133 | Back alignment and structure |
|
| >pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein In Thermus Thermophilus Hb27 Length = 217 | Back alignment and structure |
|
| >pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 584 bits (1507), Expect = 0.0
Identities = 166/622 (26%), Positives = 261/622 (41%), Gaps = 60/622 (9%)
Query: 284 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN 343
+ + +P A L +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAE----------------------------- 33
Query: 344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403
G+ L + P + + G R +A +A P
Sbjct: 34 -----LGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88
Query: 404 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMF 463
L A +D+G EAA +Y +A L P+ P T LL+ + +C W D +
Sbjct: 89 EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS 148
Query: 464 SEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHP 523
++V + + + +V+PF ++ L +R A + A
Sbjct: 149 AQVRAAVAQG-----VGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAPTRVRSK 203
Query: 524 VPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEV--FCYALSPNDGTE 581
LRVG+VS+ FG HP L ++F + ++ +A S +DG+
Sbjct: 204 -----------GPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGST 252
Query: 582 WRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVS 641
R R ++A DV+A+ AK I I +L +L G+ G R E+FA++PAP+QV+
Sbjct: 253 LRTR-LAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVN 311
Query: 642 YMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQ 701
++ +PGT+GA ++DY++ D F P YSE ++ + + +D +
Sbjct: 312 WLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSR------VVAEP 365
Query: 702 PKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAY 761
P R+ GLPE + CFN YK++P+ +LR VP+S LWLL P + RLRA+
Sbjct: 366 PSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAF 425
Query: 762 AVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLE 821
A AQGV +++F +++ R ADLFLDT NAHTT +D LW G P++T P E
Sbjct: 426 AHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGE 485
Query: 822 KMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFD 881
A RVAGSL GL +EM V + +AV+LA D L AL ++ +R +F
Sbjct: 486 TFAARVAGSLNHHLGL-DEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFH 544
Query: 882 TARWVKNLERSYFKMWSLHCSG 903
+ + + H
Sbjct: 545 MDGFADDFGALLQALARRHGWL 566
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 148 bits (374), Expect = 2e-37
Identities = 36/162 (22%), Positives = 52/162 (32%), Gaps = 3/162 (1%)
Query: 81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSN 140
D + A+ RP AW LA A + G ++ LAL+P +A +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 141 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP 200
LG + Q EA +A P L ++G A Y A +L P
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122
Query: 201 TFPDAYLNLGNVYKALGMP---QEAIMCYQRAVQTRPNAIAF 239
P L N + L + AV A+
Sbjct: 123 EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEP 164
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 7e-34
Identities = 42/201 (20%), Positives = 62/201 (30%), Gaps = 36/201 (17%)
Query: 148 QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL 207
A+R +P +AW LA + GD + + L P P+A
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 208 NLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDP 267
LG V EA + Q+A P
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASD---------------------------------AAP 88
Query: 268 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM---EWNMLPAAA 324
LG+AL+D G+ + A Y + L P P L N +W L +
Sbjct: 89 EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS 148
Query: 325 SYYKATLAVTTGLSAPFNNLA 345
+ +A +A G PF L+
Sbjct: 149 AQVRAAVAQGVGAVEPFAFLS 169
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 7e-32
Identities = 28/147 (19%), Positives = 49/147 (33%)
Query: 48 DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL 107
D + + A+R P+ + +A+A GD + L P +A + L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
+ R EAA +QA P LG+ ++ G + A + Y A ++ P
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123
Query: 168 FAIAWSNLAGLFMESGDLNRALQYYKE 194
+ L D +
Sbjct: 124 EPYITAQLLNWRRRLCDWRALDVLSAQ 150
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 1e-28
Identities = 26/189 (13%), Positives = 43/189 (22%), Gaps = 1/189 (0%)
Query: 12 SGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYG 71
+ + L + P L+L + D + L L P E
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 72 NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
+ + A A + P L A G+ AA +A L
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121
Query: 132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 191
P + L N + A +R + E L
Sbjct: 122 PEEPYITAQLLNWRRRLCD-WRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLAC 180
Query: 192 YKEAVKLKP 200
+ +
Sbjct: 181 ARTRAQAIA 189
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 2e-27
Identities = 35/237 (14%), Positives = 52/237 (21%), Gaps = 67/237 (28%)
Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN 241
+ D R L + AV+ +P A+L L + +G M QR +
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---------- 51
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
P EA LG R EA Q P
Sbjct: 52 -----------------------LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88
Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
HP LG+ + G A + Y
Sbjct: 89 EHPGIALWLGHALED----------------------------------AGQAEAAAAAY 114
Query: 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 418
++ P N + + + A A +D
Sbjct: 115 TRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSED 171
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 1e-18
Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 3/143 (2%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
+ LA G +P + + LG + + + ++A
Sbjct: 26 WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR---KGRLN 118
P + +A ++ G + A Y A +L P + L + R L+
Sbjct: 86 AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALD 145
Query: 119 EAAQCCRQALALNPLLVDAHSNL 141
+ R A+A V+ + L
Sbjct: 146 VLSAQVRAAVAQGVGAVEPFAFL 168
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 14/111 (12%), Positives = 22/111 (19%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
L + + +A + P L LG + A A +
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112
L P + N + D A A
Sbjct: 120 LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSE 170
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 449 bits (1155), Expect = e-146
Identities = 203/794 (25%), Positives = 324/794 (40%), Gaps = 85/794 (10%)
Query: 128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187
P D+ +NL N+ + QG ++EA Y +AL + P FA A SNLA + + G L
Sbjct: 2 PGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 61
Query: 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTY 246
AL +YKEA+++ PTF DAY N+GN K + Q A+ CY RA+Q P A A NLAS +
Sbjct: 62 ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH 121
Query: 247 YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 306
+ G AI Y+ A+ P F +AY NL + L+ V + + + +S+ +
Sbjct: 122 KDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181
Query: 307 LTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR 366
+ P + + KA + + VL
Sbjct: 182 NRLPSVHPHHSMLYPLSHGFRKAIAE--------------------RHGNLCLDKINVLH 221
Query: 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 426
P + + +G V+ ++ +
Sbjct: 222 KPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSH--------------------------- 254
Query: 427 KSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFH 486
L++ + S +D +V +++S +P
Sbjct: 255 -------LMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAA 307
Query: 487 AIAYPIDPMLALEIS-RKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSD 545
+ + + ++ + + A R A G L + Y+ +D
Sbjct: 308 DRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLG-----YPGTSGALFMDYIITD 362
Query: 546 FGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEH--------FVDVS 597
P E + + D + +A + +
Sbjct: 363 QETSPAEV------AEQYSEKLAYMPHTFFIGDHANMFPHLKKKAVIDFKSNGHIYDNRI 416
Query: 598 AMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYL 657
++ + ++ ++ + G + + ++ P T A + +
Sbjct: 417 VLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADS-----SNTALNMPVIPMNTIAEAVIEM 471
Query: 658 VTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFA 717
+ + S L +N+ +V RS YGLPED ++
Sbjct: 472 INRGQIQITINGFSISNGLA----TTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYC 527
Query: 718 CFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV 777
FNQLYK+DP W NIL+RVPNS LWLLRFPA GE ++ YA G+ ++IIF+ V
Sbjct: 528 NFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPV 587
Query: 778 AMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGL 837
A K+EH+RR LAD+ LDTPLCN HTTG D+LWAG PM+T+P E +A+RVA S G
Sbjct: 588 APKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGC 647
Query: 838 GEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 897
E+I + +EYE+ AV L D + L+ + K+ R++ PLF+T ++ LER Y +MW
Sbjct: 648 -LELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMW 706
Query: 898 SLHCSGQKPQHFKV 911
+ +G KP H
Sbjct: 707 EHYAAGNKPDHMIK 720
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 3e-47
Identities = 73/256 (28%), Positives = 118/256 (46%)
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
P A+ N+AN +E+G+I+ A+R Y A+E+ P FA A SNLAS ++G+L EA
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
++A+ ++P DA+SN+GN +K VQ A CY A++I P FA A SNLA + +
Sbjct: 64 MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123
Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN 241
SG++ A+ Y+ A+KLKP FPDAY NL + + + + ++ V + +
Sbjct: 124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNR 183
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
L S + +++AI L + +
Sbjct: 184 LPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYV 243
Query: 302 SHPQALTNLGNIYMEW 317
S ++
Sbjct: 244 SSDFGNHPTSHLMQSI 259
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 157 bits (397), Expect = 8e-40
Identities = 62/301 (20%), Positives = 121/301 (40%), Gaps = 6/301 (1%)
Query: 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIR 88
P D+L L I + + + + +AL + P FA + N+A+ +++G + A+
Sbjct: 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64
Query: 89 YYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148
+Y AI + P FADA+SN+ + + A QC +A+ +NP DAHSNL ++ K
Sbjct: 65 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 124
Query: 149 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN 208
G + EA + Y AL+++P F A+ NLA D + K+ V + +
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKN-R 183
Query: 209 LGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQ-----AI 263
L +V+ M +++A+ R + + + + + +
Sbjct: 184 LPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYV 243
Query: 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA 323
D + + + + CY + + N +++ + +P
Sbjct: 244 SSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCN 303
Query: 324 A 324
Sbjct: 304 G 304
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 9e-32
Identities = 56/310 (18%), Positives = 100/310 (32%), Gaps = 8/310 (2%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
LA+ + G+ ++A+ E P L ++ Q + +EA+R
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
+ P FA+ Y NM N KE D+ A++ Y AI++ P FADA SNLAS + G + EA
Sbjct: 72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI 131
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN------L 175
R AL L P DA+ NL + ++ + + + I
Sbjct: 132 ASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHH 191
Query: 176 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
+ L+ S +A+ + L + + Y + +
Sbjct: 192 SMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSS-DFGNH 250
Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
+ + Y N D+ ++ + ++
Sbjct: 251 PTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFR-VKVMAEANHFIDLSQIPCNGKAADR 309
Query: 296 CLSLQPSHPQ 305
Sbjct: 310 IHQDGIHILV 319
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 62.5 bits (151), Expect = 5e-10
Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 1/129 (0%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
+ + + + + + AL+ + NP D L +I+ + IA AL
Sbjct: 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL 138
Query: 61 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
+L+P F + Y N+A+ + D + + + + + L S + L
Sbjct: 139 KLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK-NRLPSVHPHHSMLYPL 197
Query: 121 AQCCRQALA 129
+ R+A+A
Sbjct: 198 SHGFRKAIA 206
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 410 bits (1055), Expect = e-135
Identities = 160/385 (41%), Positives = 225/385 (58%), Gaps = 1/385 (0%)
Query: 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
M LAH+ Y++G ++ A H ++ + P T LLLL +I++Q D + A++
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 63 EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
P AE Y N+ N +KE+G + AI +Y A+ L+P+F D + NLA+A + G + A Q
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 182
AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSNL +F
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGN 241
G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ PN A+ GN
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
LA YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CYN L L P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
+H +L NL NI E + A Y+ L V +A +NLA + +QQG +A+ Y
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362
Query: 362 NEVLRIDPLAADGLVNRGNTYKEIG 386
E +RI P AD N GNT KE+
Sbjct: 363 KEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 395 bits (1018), Expect = e-130
Identities = 134/383 (34%), Positives = 216/383 (56%), Gaps = 1/383 (0%)
Query: 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
+A+ + GD + A R+ + P+ L+S + + RL+ +A A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
NPLL +A+SNLGN+ K +G +QEA Y ALR++P F + NLA + +GD+ A+
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYE 248
Q Y A++ P +LGN+ KALG +EA CY +A++T+PN A+A+ NL +
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT 308
+G+ +AI ++++A+ DP FL+AY NLGN LK+ D A+ Y + LSL P+H
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241
Query: 309 NLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 368
NL +Y E ++ A Y+ + + + NLA K++G+ A+A CYN LR+
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 369 PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS 428
P AD L N N +E G + +A++ Y +A+ + P A AH+NLAS + G ++ A+
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361
Query: 429 YKQALLLRPDFPEATCNLLHTLQ 451
YK+A+ + P F +A N+ +TL+
Sbjct: 362 YKEAIRISPTFADAYSNMGNTLK 384
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 323 bits (831), Expect = e-102
Identities = 97/350 (27%), Positives = 169/350 (48%), Gaps = 1/350 (0%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
L+ ++ ++ S ++NPL + LG +Y + I ALRL+P
Sbjct: 39 LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
F + Y N+A A GD++ A++ Y+ A++ P+ S+L + GRL EA C
Sbjct: 99 DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
+A+ P A SNLG + AQG + A + +A+ + P F A+ NL + E+
Sbjct: 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
+RA+ Y A+ L P + NL VY G+ AI Y+RA++ +P+ A+ NLA
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278
Query: 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
+ E+G A Y A+ P ++ NNL N ++ G ++EA++ Y + L + P
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338
Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 353
A +NL ++ + L A +YK + ++ + ++N+ K+ +
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 308 bits (792), Expect = 7e-97
Identities = 101/316 (31%), Positives = 162/316 (51%), Gaps = 1/316 (0%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
+ L + + G ++A+EH P D + L A D + + AL+
Sbjct: 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
P ++ N K G ++ A YL AIE +PNFA AWSNL + +G + A
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
+A+ L+P +DA+ NLGN++K + A + YL AL + P A+ NLA ++ E
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249
Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240
G ++ A+ Y+ A++L+P FPDAY NL N K G EA CY A++ P A +
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
NLA+ E+G + A+ Y++A+ P F A++NL + L+ G++ EA+ Y + + +
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
Query: 301 PSHPQALTNLGNIYME 316
P+ A +N+GN E
Sbjct: 370 PTFADAYSNMGNTLKE 385
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 1e-41
Identities = 62/183 (33%), Positives = 97/183 (53%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
++ L + + ++ + +A+ +P L +YY+ D+ I A+
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
L+P F + Y N+ANA KEKG + A Y A+ L P AD+ +NLA+ +G + EA
Sbjct: 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
+ R+AL + P AHSNL ++++ QG +QEA Y EA+RI PTFA A+SN+ E
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
Query: 182 SGD 184
D
Sbjct: 386 MQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 1e-13
Identities = 12/73 (16%), Positives = 24/73 (32%)
Query: 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
G + + + G A + ++ P L+S + ++ + A+
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 434 LLRPDFPEATCNL 446
P EA NL
Sbjct: 61 KQNPLLAEAYSNL 73
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 359 bits (922), Expect = e-114
Identities = 59/426 (13%), Positives = 120/426 (28%), Gaps = 3/426 (0%)
Query: 14 SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNM 73
+++ AL + + P + + L + +A L P+ +
Sbjct: 55 AWRNAL--TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 112
Query: 74 ANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPL 133
+ + + A L P A ++ + QA L P
Sbjct: 113 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPE 172
Query: 134 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK 193
V A ++ G +A VQ +A + P +A ++ G + R L
Sbjct: 173 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 232
Query: 194 EAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQA 252
+A L P A + G +AL Q + +A P +A + +
Sbjct: 233 QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETV 292
Query: 253 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN 312
+ QA G P+ + A + G + + V + Q L P A+ +
Sbjct: 293 QRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDG 352
Query: 313 IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAA 372
+ +T + + + + + P
Sbjct: 353 GKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQV 412
Query: 373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432
+ + + + V + +A + P A A+ + A + A
Sbjct: 413 VAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPA 472
Query: 433 LLLRPD 438
L +
Sbjct: 473 LAALTN 478
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 348 bits (895), Expect = e-110
Identities = 71/456 (15%), Positives = 128/456 (28%), Gaps = 13/456 (2%)
Query: 7 HQMYKSGSYKQALEHSNSVYE---RNPLRTDNLLLLGAIYY-------QLHDYDMCIARN 56
H + S +ALE +V PL+ D LL +H + A
Sbjct: 4 HHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWR--NALT 61
Query: 57 EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116
L L P + + + + A L P A ++
Sbjct: 62 GAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALET 121
Query: 117 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176
+ QA L P V A ++ +A VQ +A + P +A ++
Sbjct: 122 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNG 181
Query: 177 GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN- 235
G + R L +A L P A + G +AL Q + +A P
Sbjct: 182 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 241
Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
+A + + QA G P+ + A + + + V + Q
Sbjct: 242 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQ 301
Query: 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 355
L P A+ + G + +T + +
Sbjct: 302 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQ 361
Query: 356 DAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA 415
+ + + P + + G + + V + +A + P A A+
Sbjct: 362 RLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421
Query: 416 YKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
+ V+ + QA L P A +
Sbjct: 422 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRP 457
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 3e-51
Identities = 37/235 (15%), Positives = 67/235 (28%), Gaps = 2/235 (0%)
Query: 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC 69
+ ++ L + P + + L + +A L P+
Sbjct: 253 QALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVA 312
Query: 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
+ + + + A L P A ++ + QA
Sbjct: 313 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG 372
Query: 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
L P V A ++ G +A VQ +A + P +A ++ G + R L
Sbjct: 373 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLL 432
Query: 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNL 242
+A L P A + G AL + A+ N +A L
Sbjct: 433 PVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACL 487
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 2e-39
Identities = 29/203 (14%), Positives = 55/203 (27%), Gaps = 1/203 (0%)
Query: 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC 69
+ ++ L + P + + G L + +A L P+
Sbjct: 287 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 346
Query: 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
+ + + + A L P A ++ + QA
Sbjct: 347 IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHG 406
Query: 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
L P V A ++ +A VQ +A + P +A ++ G + L
Sbjct: 407 LTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQL 466
Query: 190 QYYKEAVKLKPT-FPDAYLNLGN 211
A+ A LG
Sbjct: 467 SRPDPALAALTNDHLVALACLGG 489
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 2e-29
Identities = 24/177 (13%), Positives = 45/177 (25%), Gaps = 1/177 (0%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
+ + ++ L + P + + L + +A
Sbjct: 313 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG 372
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
L P + + + + A L P A ++ +
Sbjct: 373 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLL 432
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT-FAIAWSNLAG 177
QA L P V A ++ G A + S AL +A + L G
Sbjct: 433 PVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGG 489
|
| >3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A Length = 631 | Back alignment and structure |
|---|
Score = 360 bits (925), Expect = e-113
Identities = 79/573 (13%), Positives = 164/573 (28%), Gaps = 44/573 (7%)
Query: 337 LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYI 396
+S ++Y++ A S + D + + + I
Sbjct: 94 ISDLGVQRFLVYQRWLALIFASSPFVNA---DHILQTYNREPNRKNSLEIHLDSSKSSLI 150
Query: 397 RAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSW 456
+ + + + NL + S + A++ Q+ A LQ W
Sbjct: 151 KFCILYLPESNVNLNLDVMWNISPELCASLCFALQSPRFIGT-STAFNKRATILQ----W 205
Query: 457 EDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFA 516
R ++ + S + H +Y + ++ R I
Sbjct: 206 FPR-----HLDQLKNLNNIPSAISHDVYMHC-SY-DTSVNKHDVKRALNHV---IRRHIE 255
Query: 517 LPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSP 576
+ + + V + H + + + +E+ +
Sbjct: 256 SEYGWKDRDVAHIGYRNNKPVMVVLLEHFHSAHSIYRTHSTSM-IAAREHFYLIGLGSPS 314
Query: 577 NDGTEWRQRTQSEAEHFVDVSAMS----SDMIAKLINEDKIQILINLNGYTKGARNEIFA 632
D Q Q + F V+ + + I + + I +
Sbjct: 315 VD-----QAGQEVFDEFHLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASN 369
Query: 633 MQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKN 692
+ APIQ +G P TT + +I+Y++ ++ +SE L+ +P
Sbjct: 370 TRLAPIQAIALGHPATTHSDFIEYVIVEDDYVG--SEECFSETLLRLPKDALPYVP---- 423
Query: 693 MDVLDPNCQPKRSDYGLPEDK--FIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRF 750
P++ DY L E+ + K++P I R +
Sbjct: 424 -----SALAPEKVDYLLRENPEVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFAL 478
Query: 751 PAA-GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDIL 809
+ G + D + +++R D+ ++ D++
Sbjct: 479 GQSNGITHPYVERFIKSYLGDSATAHPHSPYHQYLRILHNCDMMVNPFPFGNTNGIIDMV 538
Query: 810 WAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNK 869
GL + ++ + L GL E +I N++ EY ERAV LA + Q+ L
Sbjct: 539 TLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQERLELRRY 598
Query: 870 LKSVRLTCPLFDTA--RWVKNLERSYFKMWSLH 900
+ LF + +
Sbjct: 599 IIENNGLNTLFTGDPRPMGQVFLEKLNAFLKEN 631
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 342 bits (878), Expect = e-107
Identities = 72/474 (15%), Positives = 140/474 (29%), Gaps = 28/474 (5%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
LA +G Y +A N + L +L+D+ + E
Sbjct: 123 LAQVYCCTGDYARAKCLLTKEDLYNR-SSACRYLAAFCLVKLYDWQGALNLLGETNPFRK 181
Query: 65 RF----------------AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLA 108
A + + D A Y A+ + +A+ L
Sbjct: 182 DEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV 241
Query: 109 SAYMRKGRLNEA---AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 165
S ++ + + + L + YL ++
Sbjct: 242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301
Query: 166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMC 225
+ A L + +++ P D Y G + +
Sbjct: 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLI 361
Query: 226 YQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
V P A+ + + Y + A Y+ ++ DP+F A+ ++ G
Sbjct: 362 SNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG 421
Query: 285 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 344
D+AI Y L LG +M+ + A Y +++ A+ N L
Sbjct: 422 EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL 481
Query: 345 AVIYKQQGNYADAISCYNEVLRI-------DPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
V+ + + AI+ + L + + A N G+ Y+++ AI +
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541
Query: 398 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
+ + A H +A Y AI ++L + P+ A+ L L+
Sbjct: 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 315 bits (809), Expect = 8e-97
Identities = 74/443 (16%), Positives = 139/443 (31%), Gaps = 29/443 (6%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYE----------------RNPLRTDNLLLLGAIYYQLHD 48
A + K ++ AL L L G +Y L +
Sbjct: 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215
Query: 49 YDMCIARNEEALRLEPRFAECYGNMAN----AWKEKGDIDLAIRYYLVAIELRPNFADAW 104
+D +EAL ++ + E + + + E+ D+ L + Y + F +
Sbjct: 216 FDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYST-YSKEDAAFLRSL 274
Query: 105 SNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164
L A+ ++ D + + + + + + L I
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334
Query: 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIM 224
P + ESG+ N+ + V P +L +G Y + EA
Sbjct: 335 DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR 394
Query: 225 CYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV 283
+ ++ P A+ A ++ G+ D AI Y A Y LG +
Sbjct: 395 YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL 454
Query: 284 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP--- 340
G + A + +L P L LG + + + A ++++ L + +
Sbjct: 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514
Query: 341 ----FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYI 396
+ NL Y++ Y AI N+ L + A+ Y AI
Sbjct: 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLH 574
Query: 397 RAITIRPTMAEAHANLASAYKDS 419
++ I P A L A +++
Sbjct: 575 ESLAISPNEIMASDLLKRALEEN 597
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 289 bits (741), Expect = 5e-87
Identities = 69/469 (14%), Positives = 133/469 (28%), Gaps = 29/469 (6%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNE------- 57
H YK A V + ++ L +Y DY
Sbjct: 90 WRHDALMQQQYKCAAFVGEKVLDITG-NPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNR 148
Query: 58 ---------EALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLA 108
L + + + D A + + ++ A
Sbjct: 149 SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE-ASMCYLRG 207
Query: 109 SAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLG--NLMKAQGLVQEAYSC-YLEALRIQ 165
Y + A +C ++AL ++ +A L +L+ A Y +
Sbjct: 208 QVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267
Query: 166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMC 225
F + L D R + Y ++ D L + + +
Sbjct: 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAI 327
Query: 226 YQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
+ ++ P + ++ +E G+ + L + P + +G V
Sbjct: 328 TTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN 387
Query: 285 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 344
++ EA + +++ ++ P A + + A S Y + G P+ L
Sbjct: 388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL 447
Query: 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI--- 401
+ + Q GN A + L G + AI + A+ +
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507
Query: 402 ----RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
A ANL AY+ +AAI + Q LLL + +
Sbjct: 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 185 bits (470), Expect = 1e-49
Identities = 52/377 (13%), Positives = 90/377 (23%), Gaps = 58/377 (15%)
Query: 79 EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138
+ A +++ N DA+ LA Y G A + N
Sbjct: 96 MQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTKEDLYNRSSA-CR 153
Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198
+ Q A + E + D A + + +
Sbjct: 154 YLAAFCLVKLYDWQGALNLLGETNPFR-----------------KDEKNANKLLMQDGGI 196
Query: 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAI- 256
K G VY L A CY+ A+ AF L S + + +
Sbjct: 197 KLE-ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLV 255
Query: 257 --LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314
L Y D FL + L + Y ++ L +
Sbjct: 256 LKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315
Query: 315 MEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG 374
+ + D ++ ++L IDP D
Sbjct: 316 ----------------------------------FVRSRFIDVLAITTKILEIDPYNLDV 341
Query: 375 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434
+ E G + P A + Y + A + + ++
Sbjct: 342 YPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401
Query: 435 LRPDFPEATCNLLHTLQ 451
+ P F A H+
Sbjct: 402 MDPQFGPAWIGFAHSFA 418
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-31
Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 7/188 (3%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
+ AH G + QA+ + L LG + QL + + + +
Sbjct: 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL-------RPNFADAWSNLASAYMRK 114
L + K D+ AI ++ A+ L +A W+NL AY +
Sbjct: 470 LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529
Query: 115 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 174
+ A Q L L+ + H+ + + + + A + E+L I P +A
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589
Query: 175 LAGLFMES 182
L E+
Sbjct: 590 LKRALEEN 597
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 309 bits (794), Expect = 1e-97
Identities = 61/390 (15%), Positives = 125/390 (32%), Gaps = 46/390 (11%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
E + + G + A+ + A++ P+ A+ A+ ++ G+ A +
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186
+AL A G+L+ QG + EA + + L+ P+ + L
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL-------- 114
Query: 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLAST 245
+K + AI + ++ A A
Sbjct: 115 -----------VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC 163
Query: 246 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 305
+ + G+ AI K A EA+ + +G + ++ +CL L H +
Sbjct: 164 FIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 223
Query: 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVL 365
+ + ++ +A + G Y DA S Y V+
Sbjct: 224 CFAHYKQVKKLNKLIESAEELIR----------------------DGRYTDATSKYESVM 261
Query: 366 RIDPLAADGLV----NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 421
+ +P A+ V + + + + +AI+ + + P A + A AY
Sbjct: 262 KTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321
Query: 422 VEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
+ AI+ Y+ A + + L +
Sbjct: 322 YDEAIQDYEAAQEHNENDQQIREGLEKAQR 351
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 252 bits (647), Expect = 2e-76
Identities = 45/347 (12%), Positives = 104/347 (29%), Gaps = 32/347 (9%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
H+ L ++ +G AL ++ + +P ++ + + + +
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL-------------- 107
L+ F + ++G +D A + ++ P+ +
Sbjct: 66 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRS 125
Query: 108 -ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
A A + L + + +G ++A S A +++
Sbjct: 126 QALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS 185
Query: 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNL------------GNVYK 214
A+ ++ L+ + GD +L +E +KL + +
Sbjct: 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 245
Query: 215 ALGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF 269
G +A Y+ ++T P+ + + + + + AI + + +P
Sbjct: 246 RDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN 305
Query: 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME 316
+ A + A DEAIQ Y + Q L
Sbjct: 306 VNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 3e-50
Identities = 38/227 (16%), Positives = 75/227 (33%), Gaps = 15/227 (6%)
Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
+ L GQ A+ + A+ DP AY +G+ A+
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYK----- 349
+ ++L+ A G++ ++ L A +K L + + K
Sbjct: 62 KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121
Query: 350 ----------QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI 399
+Y AI+ +++L + A+ R + + G AI D A
Sbjct: 122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS 181
Query: 400 TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
++ EA +++ Y G E ++ ++ L L D +
Sbjct: 182 KLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 228
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 2e-45
Identities = 34/236 (14%), Positives = 79/236 (33%), Gaps = 16/236 (6%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
+ A + Y A+ + + E + L + + + I+ + A +
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL------------AS 109
L+ E + ++ + + GD +L++ ++L + +++ A
Sbjct: 183 LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 242
Query: 110 AYMRKGRLNEAAQCCRQALALNP----LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 165
+R GR +A + P V + + + EA E L+++
Sbjct: 243 ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302
Query: 166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQE 221
P A + A ++ + A+Q Y+ A + L + L Q+
Sbjct: 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQK 358
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 3e-25
Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 15/160 (9%)
Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
+ + LG + L A S + A + + A ++ G A+
Sbjct: 1 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 60
Query: 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL--------- 412
+V+ + + RG+ + G++ +A D+ + + P+ E
Sbjct: 61 TKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM 120
Query: 413 ------ASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
A D AAI + L + E
Sbjct: 121 QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 311 bits (798), Expect = 7e-96
Identities = 71/471 (15%), Positives = 157/471 (33%), Gaps = 38/471 (8%)
Query: 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC 69
+ + ++ +A+++ E +P + A Y D + I +AL ++P ++
Sbjct: 36 FTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA 95
Query: 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
A+A + G+ A+ + L +F A + + +A + + L+
Sbjct: 96 LLRRASANESLGNFTDAMFDL-SVLSLNGDFDGASIE---PMLERNLNKQAMKVLNENLS 151
Query: 130 --------LNPLLVDAHSNLGNLMKA--------QGLVQEAYSCYLEALRIQPTFAIAWS 173
+ P S G AY+ +AL+ +
Sbjct: 152 KDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY 211
Query: 174 NLA-GLFMES-GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 231
+A L +S + L L+ A G + +A + Q ++
Sbjct: 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271
Query: 232 TRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 291
P ++ LA T ++ + ++++A+ +P + Y + G + A +
Sbjct: 272 LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331
Query: 292 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 351
+ + SL P + L + + + +++ T L A I +
Sbjct: 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR 391
Query: 352 GNYADAISCYNEVLRIDPLAADGLVNRGN----------------TYKEIGRVTDAIQDY 395
G++ AI Y+ R++ + V G T + + AI+
Sbjct: 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451
Query: 396 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
+A + P +A LA ++ AI+ ++ + +L E
Sbjct: 452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 295 bits (757), Expect = 5e-90
Identities = 73/459 (15%), Positives = 146/459 (31%), Gaps = 56/459 (12%)
Query: 13 GSYKQALEHSNSVYERNPLRTDN----LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAE 68
GS+ + +P + L G ++ +++ I + A+ L+P
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 69 CYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQAL 128
Y N++ + GD++ I + A+E++P+ + A ASA G +A L
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVL 119
Query: 129 ALNPLLVDAHS----NLGNLMKAQGLVQEAYS-CYLEALRIQPTFAIAWSNLA------- 176
+LN A +A ++ E S ++ P+ S
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179
Query: 177 -GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY--KALGMPQEAIMCYQRAVQTR 233
S + + A +A++ + D + N K+ M + R
Sbjct: 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR 239
Query: 234 PN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292
N A+A ++ + A + +++I P +Y L L D E +
Sbjct: 240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKF 298
Query: 293 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG 352
+ + + L P +P + G +Y
Sbjct: 299 FQKAVDLNPEYPPTYYHRGQMYFI----------------------------------LQ 324
Query: 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412
+Y +A + + ++P + + G+ T++ + PT+ E
Sbjct: 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384
Query: 413 ASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
A D G + AIK Y A L + + +
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 294 bits (754), Expect = 2e-89
Identities = 64/489 (13%), Positives = 155/489 (31%), Gaps = 72/489 (14%)
Query: 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIA-------- 54
++ + +G ++ +E + E P + LL + L ++ +
Sbjct: 65 ISACY--ISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLN 122
Query: 55 ---------------RNEEALRLEPR-FAECYGNMANAWKEKGDI--------------- 83
N++A+++ ++ G + +
Sbjct: 123 GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182
Query: 84 -------DLAIRYYLVAIELRPNFADAWSNLASAYMRK--GRLNEAAQCCRQALALNPLL 134
D A A++ + D +A+ + K + L
Sbjct: 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENA 242
Query: 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 194
A G + + +A E++ + PT ++ LA + + +++++
Sbjct: 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQK 301
Query: 195 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQAD 253
AV L P +P Y + G +Y L + A +Q+A P + LA Y++G+
Sbjct: 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFT 361
Query: 254 MAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 313
+ ++ + P E L D G D AI+ Y+ L+ + +G +
Sbjct: 362 ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL 421
Query: 314 YMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD 373
+ +L A ++ + + AI + +DP +
Sbjct: 422 IGKATIL------------------ARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463
Query: 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
+ ++ ++ +AI+ + + + TM E + ++ ++ +++
Sbjct: 464 AKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT--TFAEAAKIQKRLRADPIIS 521
Query: 434 LLRPDFPEA 442
Sbjct: 522 AKMELTLAR 530
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 1e-74
Identities = 60/352 (17%), Positives = 119/352 (33%), Gaps = 27/352 (7%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
+A + Y L + L G ++ ++ +E++
Sbjct: 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270
Query: 61 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
L P Y +A +K + +++ A++L P + + + Y A
Sbjct: 271 NLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329
Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
+ ++A +LNP V + L L+ QG E+ + + E PT + A +
Sbjct: 330 KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389
Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFG 240
+ GD + A++ Y A +L+ ++ +G + +
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS----------------- 432
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
+ T + + + AI +A DPR +A L + ++DEAI+ + L
Sbjct: 433 SQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG 352
+ + L AA K L +SA Y+ +G
Sbjct: 493 RTMDEKLQATT--------FAEAAKIQKR-LRADPIISAKMELTLARYRAKG 535
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 253 bits (647), Expect = 2e-74
Identities = 61/398 (15%), Positives = 113/398 (28%), Gaps = 63/398 (15%)
Query: 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYY--QLHDYDMCIARNEEALRLEPRFA 67
S +Y A + +R TD L+ Y ++ N L A
Sbjct: 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA 243
Query: 68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127
K ++ A +I L P +++ LA K E + ++A
Sbjct: 244 LALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKA 302
Query: 128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187
+ LNP + + G + + A + +A + P + LA L + G
Sbjct: 303 VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTE 362
Query: 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLAS-- 244
+ ++ E PT P+ + G AI Y A + +
Sbjct: 363 SEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422
Query: 245 --------------TYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 290
T + + + AI +A DPR +A L + ++DEAI
Sbjct: 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAI 482
Query: 291 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 350
+ + L + + L + +
Sbjct: 483 ELFEDSAILARTMDEKLQATT------------------------------------FAE 506
Query: 351 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV 388
+ R DP+ + + Y+ G +
Sbjct: 507 AAKIQKRL-------RADPIISAKMELTLARYRAKGML 537
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 5e-28
Identities = 34/217 (15%), Positives = 67/217 (30%), Gaps = 27/217 (12%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
++ LA +YK G + ++ N + P + I D+D I + + A R
Sbjct: 347 YIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
LE + + + + S+ + + + N A
Sbjct: 407 LEEVQEKIHVGIGPLIGK------------------ATILARQSSQDPTQLDEEKFNAAI 448
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
+ +A L+P A L L + EA + ++ + T F E
Sbjct: 449 KLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT--FAE 506
Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 218
+ ++ ++ P Y+A GM
Sbjct: 507 AA-------KIQKRLRADPIISAKMELTLARYRAKGM 536
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 307 bits (789), Expect = 7e-95
Identities = 73/485 (15%), Positives = 146/485 (30%), Gaps = 44/485 (9%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLL--LGAIYYQLHDYDMCIARNEEA 59
+Q +++ Y A+++ N E D + L A Y + D + + +A
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVGDLKKVVEMSTKA 65
Query: 60 LRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADA----WSNLASAYMRKG 115
L L+P +++ A+A + G A+ + L +F DA
Sbjct: 66 LELKPDYSKVLLRRASANEGLGKFADAMFDL-SVLSLNGDFNDASIEPMLERNLNKQAMS 124
Query: 116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMK-------------AQGLVQEAYSCYLEAL 162
+L E A A L + + + ++ Y E+
Sbjct: 125 KLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESN 184
Query: 163 RIQPTFAIAWSNLAGLFMES------------GDLNRALQYYKEAVKLKPTFPDAYLNLG 210
SNL ES L E KLK + + G
Sbjct: 185 EADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244
Query: 211 NVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 270
P A ++A++ P ++ +A +R + Y+ +A+ D
Sbjct: 245 IFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS 304
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
Y + G + D+A + +++ L P + L + N + +
Sbjct: 305 SVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEA 364
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY-------- 382
N A I + ++ A+ Y+ + ++ V
Sbjct: 365 KRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424
Query: 383 -KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441
+ +A +A + P +A LA ++ AI ++++ L E
Sbjct: 425 NPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484
Query: 442 ATCNL 446
+
Sbjct: 485 KLQAI 489
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 262 bits (672), Expect = 4e-78
Identities = 59/456 (12%), Positives = 131/456 (28%), Gaps = 59/456 (12%)
Query: 3 MALAHQMYKSGSYKQALEHSNSV---YERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEA 59
A A+ G + A+ + + + N + +L + + A
Sbjct: 79 RASAN--EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTA 136
Query: 60 LRLEPRFAECYGNMA-------------NAWKEKGDIDLAIRYYLVAIELRPNFADAWSN 106
+ ++ +L Y + E + SN
Sbjct: 137 TATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSN 196
Query: 107 LASAYMRK------------GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154
L E + L L + + G + A
Sbjct: 197 LYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA 256
Query: 155 YSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214
+ +A+ + P ++ +A + + D Y+ +A+KL Y + G +
Sbjct: 257 HEDIKKAIELFPRVN-SYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF 315
Query: 215 ALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAY 273
L +A + +A + P + LA Y + D + +A P E
Sbjct: 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVP 375
Query: 274 NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 333
N L D D+A++ Y+ + L+ + + + +L
Sbjct: 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR----------- 424
Query: 334 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 393
N+ +A + + ++DP + + + + +AI
Sbjct: 425 --------------NPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470
Query: 394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429
+ + + TM E + + ++ V+ I+S
Sbjct: 471 LFEESADLARTMEEKLQAI--TFAEAAKVQQRIRSD 504
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 255 bits (654), Expect = 1e-75
Identities = 67/452 (14%), Positives = 124/452 (27%), Gaps = 67/452 (14%)
Query: 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIR 88
L G +++ YD I AL L+ Y N++ + GD+ +
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVE 60
Query: 89 YYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHS----NLGNL 144
A+EL+P+++ ASA G+ +A L+LN DA
Sbjct: 61 MSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL-SVLSLNGDFNDASIEPMLERNLN 119
Query: 145 MKAQGLVQEAYSCYLEALRIQPTF-------------AIAWSNLAGLFMESGDLNRALQY 191
+A ++E + A + F
Sbjct: 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179
Query: 192 YKEAVKLKPTFPDAYLNLGNVY------------KALGMPQEAIMCYQRAVQTRPN-AIA 238
Y E+ + + NL KA + +E + + + AI+
Sbjct: 180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239
Query: 239 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298
+ + + A K+AI PR +Y + + D E +++ L
Sbjct: 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYFDKALK 298
Query: 299 LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAI 358
L ++ + G + NY A
Sbjct: 299 LDSNNSSVYYHRGQMNFI----------------------------------LQNYDQAG 324
Query: 359 SCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 418
+++ +DP + + D + A P E A D
Sbjct: 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD 384
Query: 419 SGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450
+ A+K Y A+ L + +
Sbjct: 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 321 bits (823), Expect = 1e-94
Identities = 62/440 (14%), Positives = 124/440 (28%), Gaps = 4/440 (0%)
Query: 13 GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
+ + AL + + P + + L + +A L P +
Sbjct: 174 HASRNAL--TGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 231
Query: 73 MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
+ + + A L P+ A ++ + QA L P
Sbjct: 232 HDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 291
Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
V A ++ G +A VQ +A + P +A ++ G + R L
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ 251
+A L P A + G +AL Q + +A P+ +A +
Sbjct: 352 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG-GKQALET 410
Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311
+ QA G P + A + + + V + Q L P+ A+ +
Sbjct: 411 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHD 470
Query: 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371
+ +T + + + + + P
Sbjct: 471 GGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ 530
Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
+ + G + + V + +A + P A A+ + V+ + Q
Sbjct: 531 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 590
Query: 432 ALLLRPDFPEATCNLLHTLQ 451
A L A + + Q
Sbjct: 591 AHGLTQVQVVAIASNIGGKQ 610
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 308 bits (791), Expect = 3e-90
Identities = 58/440 (13%), Positives = 119/440 (27%), Gaps = 2/440 (0%)
Query: 13 GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
+ ++ L + P + + L + +A L P +
Sbjct: 308 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 367
Query: 73 MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
+ + + A L P+ A ++ + QA L P
Sbjct: 368 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTP 426
Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
V A ++ +A VQ + + P +A ++ G + + L
Sbjct: 427 DQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL 486
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ 251
+A L P A + +AL Q + +A P+ +A +
Sbjct: 487 CQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 546
Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311
+ QA G P + A + G + + V + Q L A+ +
Sbjct: 547 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNI 606
Query: 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371
+ +T + + + + + P
Sbjct: 607 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666
Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
+ + G + + V + +A + A A+ + V+ + Q
Sbjct: 667 VVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQ 726
Query: 432 ALLLRPDFPEATCNLLHTLQ 451
A L PD A + Q
Sbjct: 727 AHGLTPDQVVAIASNGGGKQ 746
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 303 bits (777), Expect = 2e-88
Identities = 59/451 (13%), Positives = 121/451 (26%), Gaps = 2/451 (0%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
+ + ++ L + P + + L + +A
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHG 254
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
L P + + + + A L P+ A ++ +
Sbjct: 255 LPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLL 314
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
QA L P V A ++ +A VQ +A + P +A ++ G
Sbjct: 315 PVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 374
Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240
+ R L +A L P A + G +AL Q + +A P+ +A
Sbjct: 375 LETVQRLLPVLCQAHGLTPDQVVAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVAIA 433
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
+ + Q G P + A + + + V + + Q L
Sbjct: 434 SHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT 493
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
P A+ + + +T + + +
Sbjct: 494 PDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 553
Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
+ + P + + G + + V + +A + A A+ +
Sbjct: 554 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALE 613
Query: 421 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
V+ + QA L P A + Q
Sbjct: 614 TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQ 644
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 291 bits (747), Expect = 3e-84
Identities = 59/451 (13%), Positives = 120/451 (26%), Gaps = 2/451 (0%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
+ + ++ L + P + + G L + +A
Sbjct: 365 IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHG 423
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
L P + + + + L P A ++ + +
Sbjct: 424 LTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLL 483
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
QA L P V A ++ +A VQ +A + P +A ++ G
Sbjct: 484 PVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 543
Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240
+ R L +A L P A + G +AL Q + +A +A
Sbjct: 544 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIA 603
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
+ + QA G P + A + + + V + Q L
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
P A+ + G + +T + + +
Sbjct: 664 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPV 723
Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
+ + P + + G + + V + +A + P A A+ +
Sbjct: 724 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALE 783
Query: 421 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
V+ + Q L A + + Q
Sbjct: 784 TVQRLLPVLCQDHGLTLAQVVAIASNIGGKQ 814
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 291 bits (746), Expect = 4e-84
Identities = 58/451 (12%), Positives = 121/451 (26%), Gaps = 2/451 (0%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
+ + ++ L + P + + G L + +A
Sbjct: 331 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 390
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
L P + + + + A L P+ A ++ +
Sbjct: 391 LTPDQVVAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLL 449
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
Q L P V A ++ +A VQ+ +A + P +A ++ G
Sbjct: 450 PVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQA 509
Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFG 240
+ R L +A L P A + G +AL Q + +A P +A
Sbjct: 510 LATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 569
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
+ + QA G + A + + + V + Q L
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 629
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
P+ A+ + + +T + + +
Sbjct: 630 PAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 689
Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
+ + + + + + V + +A + P A A+ +
Sbjct: 690 LCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 749
Query: 421 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
V+ + QA L P A + + Q
Sbjct: 750 TVQRLLPVLCQAHGLTPAQVVAIASNIGGKQ 780
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 290 bits (744), Expect = 6e-84
Identities = 63/436 (14%), Positives = 120/436 (27%), Gaps = 2/436 (0%)
Query: 17 QALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANA 76
A E + + + + G + + A L L P +
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG 201
Query: 77 WKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVD 136
+ + + A L P A ++ + QA L P V
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVV 261
Query: 137 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAV 196
A ++ +A VQ +A + P +A ++ G + R L +A
Sbjct: 262 AIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAH 321
Query: 197 KLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMA 255
L P A + +AL Q + +A P+ +A +
Sbjct: 322 GLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 381
Query: 256 ILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315
+ QA G P + A + G + + V + Q L P A+ +
Sbjct: 382 LPVLCQAHGLTPDQVVAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQ 440
Query: 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 375
+ T +T + + + + + P +
Sbjct: 441 ALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAI 500
Query: 376 VNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL 435
+ + + V + +A + P A A+ + V+ + QA L
Sbjct: 501 ASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 560
Query: 436 RPDFPEATCNLLHTLQ 451
PD A + Q
Sbjct: 561 TPDQVVAIASNGGGKQ 576
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 279 bits (715), Expect = 6e-80
Identities = 56/440 (12%), Positives = 116/440 (26%), Gaps = 1/440 (0%)
Query: 13 GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
+ ++ L + P + + L + + L P +
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIAS 468
Query: 73 MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
+ + + A L P+ A ++ + QA L P
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP 528
Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
V A ++ G +A VQ +A + P +A ++ G + R L
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 588
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
+A L A + +AL Q + +A P +A +
Sbjct: 589 CQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALET 648
Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311
+ QA G P + A + G + + V + Q L A+ +
Sbjct: 649 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNN 708
Query: 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371
+ +T + + + + + P
Sbjct: 709 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQ 768
Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
+ + + + V + + + A A+ + V+ + Q
Sbjct: 769 VVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQ 828
Query: 432 ALLLRPDFPEATCNLLHTLQ 451
A L D A + + Q
Sbjct: 829 AHGLTQDQVVAIASNIGGKQ 848
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 266 bits (680), Expect = 4e-75
Identities = 56/442 (12%), Positives = 116/442 (26%), Gaps = 1/442 (0%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
+ + +Q L + P + + L + +A
Sbjct: 466 IASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHG 525
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
L P + + + + A L P+ A ++ +
Sbjct: 526 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 585
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
QA L + V A ++ +A VQ +A + P +A ++ G
Sbjct: 586 PVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQA 645
Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240
+ R L +A L P A + G +AL Q + +A +A
Sbjct: 646 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIA 705
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
+ + QA G P + A + G + + V + Q L
Sbjct: 706 SNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 765
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
P+ A+ + + +T + + +
Sbjct: 766 PAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPV 825
Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
+ + + + + + V + + + P A A+ +
Sbjct: 826 LCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALE 885
Query: 421 HVEAAIKSYKQALLLRPDFPEA 442
V+ + Q L D A
Sbjct: 886 TVQRLLPVLCQDHGLTLDQVVA 907
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 260 bits (665), Expect = 3e-73
Identities = 57/440 (12%), Positives = 118/440 (26%), Gaps = 1/440 (0%)
Query: 13 GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
+ ++ L + P + + L + +A L P +
Sbjct: 443 ETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIAS 502
Query: 73 MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
+ + + A L P+ A ++ + QA L P
Sbjct: 503 NIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 562
Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
V A ++ G +A VQ +A + +A ++ G + R L
Sbjct: 563 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVL 622
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ 251
+A L P A + +AL Q + +A P+ +A +
Sbjct: 623 CQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 682
Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311
+ QA G + A + + + V + Q L P A+ + G
Sbjct: 683 VQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 742
Query: 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371
+ +T + + + + +
Sbjct: 743 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQ 802
Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
+ + + + V + +A + A A+ + V+ + Q
Sbjct: 803 VVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQ 862
Query: 432 ALLLRPDFPEATCNLLHTLQ 451
L PD A + + Q
Sbjct: 863 DHGLTPDQVVAIASNIGGKQ 882
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 254 bits (651), Expect = 2e-71
Identities = 58/413 (14%), Positives = 112/413 (27%), Gaps = 4/413 (0%)
Query: 40 GAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99
A+ Y I EA + + A A + + A ++L
Sbjct: 99 AALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARA--LEALLTDAGELRGPPLQLDTG 156
Query: 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYL 159
+ + L L P V A ++ +A VQ
Sbjct: 157 QLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLC 216
Query: 160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 219
+A + P +A ++ G + R L +A L P A + +AL
Sbjct: 217 QAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETV 276
Query: 220 QEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 278
Q + +A P+ +A + + QA G P + A +
Sbjct: 277 QRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDG 336
Query: 279 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS 338
+ + V + Q L P A+ + G + +T
Sbjct: 337 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQV 396
Query: 339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398
+ + + + + P + + + + V + +
Sbjct: 397 VAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQT 455
Query: 399 ITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
+ P A A+ + V+ + QA L PD A + + Q
Sbjct: 456 HGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQ 508
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 240 bits (613), Expect = 2e-66
Identities = 55/451 (12%), Positives = 116/451 (25%), Gaps = 2/451 (0%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
+ + ++ L + P + + G L + +A
Sbjct: 500 IASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 559
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
L P + + + + A L A ++ +
Sbjct: 560 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLL 619
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
QA L P V A ++ +A VQ +A + P +A ++ G
Sbjct: 620 PVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 679
Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240
+ R L +A L A + +AL Q + +A P+ +A
Sbjct: 680 LETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 739
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
+ + QA G P + A + + + V + Q L
Sbjct: 740 SNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLT 799
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
+ A+ + + +T + + +
Sbjct: 800 LAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPV 859
Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
+ + P + + + + V + + + A A+ +
Sbjct: 860 LCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGG-KQALE 918
Query: 421 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
V+ + Q L PD A + Q
Sbjct: 919 TVQRLLPVLCQDHGLTPDQVVAIASNSGGKQ 949
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 238 bits (609), Expect = 9e-66
Identities = 54/442 (12%), Positives = 114/442 (25%), Gaps = 2/442 (0%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
+ + ++ L + P + + G L + +A
Sbjct: 534 IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 593
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
L + + + + A L P A ++ +
Sbjct: 594 LTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLL 653
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
QA L P V A ++ G +A VQ +A + +A ++ G
Sbjct: 654 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQA 713
Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240
+ R L +A L P A + G +AL Q + +A P +A
Sbjct: 714 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIA 773
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
+ + Q G + A + + + V + Q L
Sbjct: 774 SNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 833
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
A+ + + +T + + +
Sbjct: 834 QDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPV 893
Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
+ + + + G + + V + + + P A A+ + +
Sbjct: 894 LCQDHGLTLDQVVAIASNGG-KQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALE 952
Query: 421 HVEAAIKSYKQALLLRPDFPEA 442
V+ + Q L P+ A
Sbjct: 953 TVQRLLPVLCQDHGLTPNQVVA 974
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 2e-60
Identities = 50/442 (11%), Positives = 108/442 (24%), Gaps = 10/442 (2%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
+ + ++ L + ++ + L + +A
Sbjct: 568 IASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHG 627
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
L P + + + + A L P+ A ++ +
Sbjct: 628 LTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 687
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
QA L V A ++ +A VQ +A + P +A ++ G
Sbjct: 688 PVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 747
Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFG 240
+ R L +A L P A + +AL Q + + +A
Sbjct: 748 LETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIA 807
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
+ + QA G + A + + + V + Q L
Sbjct: 808 SNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLT 867
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ----GNYAD 356
P A+ + + +T +A+
Sbjct: 868 PDQVVAIASNIGGKQALETVQRLLPVLCQDHGLT-----LDQVVAIASNGGKQALETVQR 922
Query: 357 AISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY 416
+ + + P + + + + V + + + P A A+
Sbjct: 923 LLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQ 982
Query: 417 KDSGHVEAAIKSYKQALLLRPD 438
V + L D
Sbjct: 983 ALESIVAQLSRPDPALAALTND 1004
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 1e-41
Identities = 46/400 (11%), Positives = 97/400 (24%), Gaps = 10/400 (2%)
Query: 13 GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
+ ++ L + P + + G L + +A L +
Sbjct: 647 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIAS 706
Query: 73 MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
+ + + A L P+ A ++ + QA L P
Sbjct: 707 NNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 766
Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
V A ++ +A VQ + + +A ++ G + R L
Sbjct: 767 AQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVL 826
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ 251
+A L A + +AL Q + + P+ +A +
Sbjct: 827 CQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALET 886
Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311
+ Q G + A + G + + V + Q L P A+ +
Sbjct: 887 VQRLLPVLCQDHGLTLDQVVAIASNGGK-QALETVQRLLPVLCQDHGLTPDQVVAIASNS 945
Query: 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371
+ +T + + A + +
Sbjct: 946 GGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQALESIVAQLSRPDPALAALTNDH 1005
Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 411
L G A+ + + P +
Sbjct: 1006 LVALACLGG--------RPAMDAVKKGLPHAPELIRRVNR 1037
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 154 bits (389), Expect = 2e-38
Identities = 49/368 (13%), Positives = 101/368 (27%), Gaps = 12/368 (3%)
Query: 13 GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
+ ++ L + + + L + +A L P +
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 740
Query: 73 MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
+ + + A L P A ++ + Q L
Sbjct: 741 NGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 800
Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
V A ++ +A VQ +A + +A ++ G + R L
Sbjct: 801 AQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVL 860
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYER--G 250
+ L P A + +AL Q + + + + +AS ++
Sbjct: 861 CQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVA--IASNGGKQALE 918
Query: 251 QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310
+ Q G P + A + + + V + Q L P+ A+ +
Sbjct: 919 TVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASN 978
Query: 311 GNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL 370
G +++ + A A+T N+ V G A+ + L P
Sbjct: 979 GGKQALESIVAQLSRPDPALAALT-------NDHLVALACLGGRP-AMDAVKKGLPHAPE 1030
Query: 371 AADGLVNR 378
+ R
Sbjct: 1031 LIRRVNRR 1038
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-36
Identities = 49/370 (13%), Positives = 96/370 (25%), Gaps = 56/370 (15%)
Query: 89 YYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148
++ RP A AAQ + A L + K +
Sbjct: 19 SSGSSMAARPPRAKPAPR-----------RRAAQPSDASPAAQVDLRTLGYSQQQQEKIK 67
Query: 149 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN 208
V+ + + EAL +++ L L Y+ + P +
Sbjct: 68 PKVRSTVAQHHEALVGH---GFTHAHIVALSQHPAALGTVAVTYQHIITALPEATHEDIV 124
Query: 209 LGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERG--QADMAILYYKQAIGCD 266
+ EA++ ++ P + G L +RG A A+ + A+
Sbjct: 125 GVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVK-IAKRGGVTAMEAVHASRNALTGA 183
Query: 267 PRFL-----EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP 321
P L A + + + V + Q L P+ A+ +
Sbjct: 184 PLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGK------- 236
Query: 322 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT 381
+ + + + P + +
Sbjct: 237 ---------------------------QALETMQRLLPVLCQAHGLPPDQVVAIASNIGG 269
Query: 382 YKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441
+ + V + +A + P A A+ + V+ + QA L PD
Sbjct: 270 KQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVV 329
Query: 442 ATCNLLHTLQ 451
A + Q
Sbjct: 330 AIASHDGGKQ 339
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 298 bits (765), Expect = 4e-92
Identities = 63/432 (14%), Positives = 135/432 (31%), Gaps = 69/432 (15%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
G + Y +++ E + + G + A+ + A++ P
Sbjct: 9 SGVDLGTENLY-------FQSMA----DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP 57
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCY 158
+ A+ A+ ++ G+ A + + L A G+L+ QG + EA +
Sbjct: 58 DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDF 117
Query: 159 LEALRIQPTFAIAWSNLAGLF---------------MESGDLNRALQYYKEAVKLKPTFP 203
+ L+ P+ + L SGD A+ + + +++
Sbjct: 118 KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA 177
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 262
+ + G P++AI + A + + N AF +++ YY+ G ++++ ++
Sbjct: 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237
Query: 263 IGCDPRFLEAYNNL------------GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310
+ D + + L GR +A Y + +PS +
Sbjct: 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS 297
Query: 311 GNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL 370
+ + + +AI +EVL+++P
Sbjct: 298 ------------------------------KERICHCFSKDEKPVEAIRVCSEVLQMEPD 327
Query: 371 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 430
+ L +R Y +AIQDY A + L A + +
Sbjct: 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKI 387
Query: 431 QALLLRPDFPEA 442
+ E
Sbjct: 388 LGVKRNAKKQEI 399
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 252 bits (645), Expect = 6e-75
Identities = 60/427 (14%), Positives = 128/427 (29%), Gaps = 50/427 (11%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
H+ L ++ +G AL ++ + +P ++ + + + ++
Sbjct: 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS---------------N 106
L+ F + ++G +D A + ++ P+ + +
Sbjct: 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS 148
Query: 107 LASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
A G A + L + + +G ++A S A +++
Sbjct: 149 QALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN 208
Query: 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA----------- 215
A+ ++ L+ + GD +L +E +KL + + V K
Sbjct: 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 268
Query: 216 -LGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF 269
G +A Y+ ++T P+ + + + + + AI + + +P
Sbjct: 269 RDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN 328
Query: 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 329
+ A + A DEAIQ Y + Q L YYK
Sbjct: 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS-QKRDYYKI 387
Query: 330 TLAVTTGLSAPFNNLAVIYKQQGNYADAISCY-NEVLRIDPLAADGLVNRGNTYKEIGRV 388
L V K+ + I Y L+ P + K+ +
Sbjct: 388 -LGV---------------KRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDI 431
Query: 389 TDAIQDY 395
A +
Sbjct: 432 AAAKEVL 438
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 247 bits (633), Expect = 3e-73
Identities = 59/391 (15%), Positives = 117/391 (29%), Gaps = 77/391 (19%)
Query: 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYL 159
+ + ++ V+ H LG + A G + +A S +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMAD-----------VEKHLELGKKLLAAGQLADALSQFH 50
Query: 160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 219
A+ P IA+ A +F+ G AL + ++LK F A L G++ G
Sbjct: 51 AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKL 110
Query: 220 QEAIMCYQRAVQTRPN----------------AIAFGNLASTYYERGQADMAILYYKQAI 263
EA +++ +++ P+ + A + G AI + + +
Sbjct: 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170
Query: 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA 323
E G +AI L+ + +A + +Y +
Sbjct: 171 EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ------- 223
Query: 324 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP------------LA 371
G++ ++S E L++D
Sbjct: 224 ---------------------------LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256
Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE----AHANLASAYKDSGHVEAAIK 427
+ L+ GR TDA Y + P++AE + + + AI+
Sbjct: 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316
Query: 428 SYKQALLLRPDFPEATCNLLHTLQCVCSWED 458
+ L + PD A + +++
Sbjct: 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDE 347
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 6e-23
Identities = 32/230 (13%), Positives = 68/230 (29%), Gaps = 34/230 (14%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNP------------LRTDNLLLLGAIYYQLHDY 49
++ Y+ G ++ +L + + + + L+ + Y
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 273
Query: 50 DMCIARNEEALRLEPRFAE----CYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS 105
++ E ++ EP AE + + + + AIR +++ P+ +A
Sbjct: 274 TDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333
Query: 106 NLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLV-------------- 151
+ A AY+ + +EA Q A N L +
Sbjct: 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393
Query: 152 ---QEAYSCYLE-ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK 197
QE Y + AL+ P + D+ A + +
Sbjct: 394 AKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 277 bits (710), Expect = 9e-86
Identities = 55/327 (16%), Positives = 113/327 (34%), Gaps = 13/327 (3%)
Query: 13 GSYKQALEHS-NSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYG 71
GSY + E + D ++ L +Y D+ MC + +P A C
Sbjct: 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60
Query: 72 NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA-QCCRQALAL 130
E + ++L P+ +W + Y+ G NE A + +A L
Sbjct: 61 VHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL 120
Query: 131 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 190
A G+ + +A + Y A ++ + + + + + A +
Sbjct: 121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAER 180
Query: 191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP----------NAIAFG 240
++ +A+ + P P +G V G + A + A++
Sbjct: 181 FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
NL + + A+ Y++QA+ P+ Y+ +G +G + A+ ++ L L+
Sbjct: 241 NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300
Query: 301 PSHPQALTNLGNIYMEWNML-PAAASY 326
++T LG+ + A
Sbjct: 301 RDDTFSVTMLGHCIEMYIGDSEAYIGA 327
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 270 bits (693), Expect = 2e-83
Identities = 46/339 (13%), Positives = 105/339 (30%), Gaps = 27/339 (7%)
Query: 93 AIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ 152
+++ D +LA + + + +P +
Sbjct: 14 SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKAN 73
Query: 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN-RALQYYKEAVKLKPTFPDAYLNLGN 211
E + + + + P+ ++W + ++ G N A +Y +A L+ T+ A++ G+
Sbjct: 74 ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH 133
Query: 212 VYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 270
+ +A+ Y A Q + + Y + +A ++ QA+ P
Sbjct: 134 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP 193
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
+ +G G A + + L + +T
Sbjct: 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV-----------DKWEPLL--- 239
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
NNL + ++ YA+A+ + + L + P A G + +G +
Sbjct: 240 -----------NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFEN 288
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429
A+ + A+ +R + L + A
Sbjct: 289 AVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 269 bits (689), Expect = 8e-83
Identities = 50/302 (16%), Positives = 111/302 (36%), Gaps = 11/302 (3%)
Query: 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE 63
+LA + Y + +K + ++ V E++P L + +L+ + + + + L
Sbjct: 27 SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY 86
Query: 64 PRFAECYGNMANAWKEKG-DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
P + + + G + A RY A L + AW ++ + ++A
Sbjct: 87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMA 146
Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 182
A L +G + A + +AL I P + + ++
Sbjct: 147 AYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN 206
Query: 183 GDLNRALQYYKEAVKL---------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233
G+ A +++ +A++ + NLG+V + L EA+ +++A+
Sbjct: 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266
Query: 234 PN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292
P A + + + G + A+ Y+ A+G + LG+ ++ EA
Sbjct: 267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIG 326
Query: 293 YN 294
+
Sbjct: 327 AD 328
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 214 bits (547), Expect = 9e-63
Identities = 39/310 (12%), Positives = 82/310 (26%), Gaps = 45/310 (14%)
Query: 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 212
+ + E++ +LA + D + ++ P
Sbjct: 6 PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT 65
Query: 213 YKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ-ADMAILYYKQAIGCDPRFL 270
L E + V P+ +++ + Y G + A Y +A + +
Sbjct: 66 LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG 125
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
A+ G++ D+A+ Y L + +G Y
Sbjct: 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL-------------- 171
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
N A +++ L I P + G + G
Sbjct: 172 --------------------TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKT 211
Query: 391 AIQDYIRAITIRPTM---------AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441
A + ++ A+ + NL + A+ ++QAL+L P
Sbjct: 212 AEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAS 271
Query: 442 ATCNLLHTLQ 451
+ +
Sbjct: 272 TYSAIGYIHS 281
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 13/89 (14%), Positives = 26/89 (29%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
L H K Y +AL++ P +G I+ + +++ + AL
Sbjct: 239 LNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYY 90
L + + + A
Sbjct: 299 LRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 275 bits (705), Expect = 1e-84
Identities = 64/352 (18%), Positives = 122/352 (34%), Gaps = 48/352 (13%)
Query: 40 GAIYYQLHDY-DMCIARNEEALRLEP----RFAECYGNMANAWKEKGDIDLAIRYYLVAI 94
+ L DY D+ A ++ + E R ++GD+ A+ + A+
Sbjct: 32 AEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV 91
Query: 95 ELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154
+ P +AW L + + A R+ L L P A L + L ++A
Sbjct: 92 QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA 151
Query: 155 YSCYLEALRIQPTFAIAWS---------------NLAGLFMESGDLNRALQYYKEAVKLK 199
+ LR P +A + + G + + + AV+L
Sbjct: 152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 211
Query: 200 PTFPDA--YLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAI 256
PT D LG ++ G +A+ C+ A+ RPN + + L +T Q++ A+
Sbjct: 212 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271
Query: 257 LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME 316
Y++A+ P ++ + NLG + ++G EA++ + + L++Q G +
Sbjct: 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331
Query: 317 -WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
W + L + G + L
Sbjct: 332 IW------------------------STLRLALSMLGQSDAYGAADARDLST 359
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 251 bits (644), Expect = 7e-76
Identities = 53/414 (12%), Positives = 104/414 (25%), Gaps = 82/414 (19%)
Query: 57 EEALRLEPRFAECYGNMANAWKEKGDI------------DLAIRYYLVAIELRPN----F 100
E A + + + +E DL Y +
Sbjct: 4 ERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRD 63
Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
+++G L A A+ +P ++A LG A S
Sbjct: 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 123
Query: 161 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 220
L ++P A LA F +A + ++ ++ P +
Sbjct: 124 CLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG------ 177
Query: 221 EAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEA--YNNLGN 278
+ + + A+ DP ++ LG
Sbjct: 178 ------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225
Query: 279 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS 338
G D+A+ C+ LS++P+ LG
Sbjct: 226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL------------------------ 261
Query: 339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398
+A++ Y L + P N G + +G +A++ ++ A
Sbjct: 262 ----------ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 311
Query: 399 ITIRPTMAEAHANLAS-----------AYKDSGHVEAAIKSYKQAL-LLRPDFP 440
+ ++ + A G +A + + L L F
Sbjct: 312 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 1e-45
Identities = 40/245 (16%), Positives = 72/245 (29%), Gaps = 35/245 (14%)
Query: 14 SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYG-- 71
+ ++ LE P L+ L + + LR P +A
Sbjct: 120 ALRRCLEL-------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA 172
Query: 72 -------------NMANAWKEKGDIDLAIRYYLVAIELRPNF--ADAWSNLASAYMRKGR 116
+ + +L A+ L P D L + G
Sbjct: 173 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE 232
Query: 117 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176
++A C AL++ P + LG + +EA + Y AL +QP + + NL
Sbjct: 233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292
Query: 177 GLFMESGDLNRALQYYKEAVKLKPTFPDAYL-----------NLGNVYKALGMPQEAIMC 225
+ G A++++ EA+ ++ L LG
Sbjct: 293 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352
Query: 226 YQRAV 230
R +
Sbjct: 353 DARDL 357
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 268 bits (686), Expect = 5e-82
Identities = 62/383 (16%), Positives = 113/383 (29%), Gaps = 57/383 (14%)
Query: 86 AIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145
A E W +A +
Sbjct: 8 AKAAVESDTEFWDKMQAEWEEMAR--------------------------RNWISENQEA 41
Query: 146 KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDA 205
+ Q V + Y ++ GDL + + + A+ P +A
Sbjct: 42 QNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEA 101
Query: 206 YLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIG 264
+ LG Q AI+ QR ++ +PN A LA +Y A K I
Sbjct: 102 WQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK 161
Query: 265 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAA 324
+P++ N + R+ ++ + ++ + +A G+
Sbjct: 162 QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD--------MIDP 213
Query: 325 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 384
L V++ G + AI +N L + P G T
Sbjct: 214 DLQ--------------TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN 259
Query: 385 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA-- 442
R +A++ Y RA+ I+P + NL + + G A+ ++ AL L+
Sbjct: 260 GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQ 319
Query: 443 ------TCNLLHTLQCVCSWEDR 459
+ N+ L+ S D+
Sbjct: 320 VPHPAISGNIWAALRIALSLMDQ 342
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 1e-76
Identities = 56/407 (13%), Positives = 114/407 (28%), Gaps = 70/407 (17%)
Query: 46 LHDYDMCIARNEEALRLEPRFAECYGNMAN--------AWKEKGDIDLAIRYYLVAIELR 97
+++ A E + + MA + + + + + Y E
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 98 PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC 157
+++G L A+ +P +A LG Q A
Sbjct: 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVA 121
Query: 158 YLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
L +QP A LA + + A + K +K P + N
Sbjct: 122 LQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTR 181
Query: 218 MPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEA--YNN 275
++ + + Y +A + ++
Sbjct: 182 RMSKSPVDS-----------------------SVLEGVKELYLEAAHQNGDMIDPDLQTG 218
Query: 276 LGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 335
LG G + AI +N L+++P
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSL----------------------------- 249
Query: 336 GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 395
+N L +A+ Y L I P N G + +G +A+ ++
Sbjct: 250 -----WNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNF 304
Query: 396 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
+ A++++ A SG++ AA++ +L+ +P+ +A
Sbjct: 305 LTALSLQRKSRNQQQVPHPAI--SGNIWAALR-IALSLMDQPELFQA 348
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 1e-76
Identities = 59/377 (15%), Positives = 107/377 (28%), Gaps = 43/377 (11%)
Query: 14 SYKQALEHSNSVYER-NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
+ + E + + + N + +
Sbjct: 11 AVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFE 70
Query: 73 MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
++GD+ + I + AI P A+AW L A ++ L L P
Sbjct: 71 EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130
Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ-- 190
+ A L Q+A ++ P + N G + ++++
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190
Query: 191 --------YYKEAVKLKPTFPDA--YLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAF 239
Y EA D LG ++ G AI + A+ RP +
Sbjct: 191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLW 250
Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
L +T +++ A+ Y +A+ P F+ + NLG + ++G EA+ + LSL
Sbjct: 251 NRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310
Query: 300 QPSHPQALTNLGNIYME--WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 357
Q W L +A+ Q A
Sbjct: 311 QRKSRNQQQVPHPAISGNIWAAL----------------------RIALSLMDQPELFQA 348
Query: 358 -----ISCYNEVLRIDP 369
+ +DP
Sbjct: 349 ANLGDLDVLLRAFNLDP 365
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 2e-32
Identities = 28/229 (12%), Positives = 59/229 (25%), Gaps = 42/229 (18%)
Query: 250 GQADMAILYYKQAIGCDPRFLEAYNNLGN--------ALKDVGRVDEAIQCYNQCLSLQP 301
+ + A + + + + ++ V + + Y
Sbjct: 3 MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPF 62
Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
G ++ +G+ I
Sbjct: 63 KDWPGAFEEGLKRLK----------------------------------EGDLPVTILFM 88
Query: 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 421
+ DP A+ G T E AI R + ++P +A LA +Y ++ H
Sbjct: 89 EAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH 148
Query: 422 VEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGII 470
+ A ++ K + P + N + S +EG+
Sbjct: 149 QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVK 197
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 259 bits (665), Expect = 2e-79
Identities = 42/318 (13%), Positives = 93/318 (29%), Gaps = 38/318 (11%)
Query: 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123
+ E + + ++ A + + P +AW +L + A
Sbjct: 18 YMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIA 77
Query: 124 CRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS---------- 173
A L+P + H+ L + A + L QP + S
Sbjct: 78 LNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDID 137
Query: 174 -----NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
+ F + A+++ P + +LG +Y A +R
Sbjct: 138 DLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRR 197
Query: 229 AVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 287
AV+ RP+ A + L +T + A+ Y +A+ +P ++ N+ + ++ + D
Sbjct: 198 AVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257
Query: 288 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 347
A + + + +Q + +++ L
Sbjct: 258 LAAKQLVRAIYMQVGGTTPTGEASR-----EATRSMWDFFRMLL---------------- 296
Query: 348 YKQQGNYADAISCYNEVL 365
Y + +
Sbjct: 297 -NVMNRPDLVELTYAQNV 313
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 249 bits (638), Expect = 1e-75
Identities = 51/377 (13%), Positives = 90/377 (23%), Gaps = 73/377 (19%)
Query: 81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSN 140
G + Y + + + ++ L EAA P +A +
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 141 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP 200
LG A A + P + LA + N AL + + +P
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120
Query: 201 TFPDAY---------------LNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLAS 244
+ + + A +E A++ PN A +L
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180
Query: 245 TYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 304
Y D A ++A+ P + +N LG L + R EA+ YN+ L + P +
Sbjct: 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV 240
Query: 305 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 364
+ N+AV Y Y A
Sbjct: 241 RV----------------------------------MYNMAVSYSNMSQYDLAAKQLVRA 266
Query: 365 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEA 424
+ + +
Sbjct: 267 IYMQVGGTTPTGEASREATR----------------------SMWDFFRMLLNVMNRPDL 304
Query: 425 AIKSYKQAL-LLRPDFP 440
+Y Q + +F
Sbjct: 305 VELTYAQNVEPFAKEFG 321
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 241 bits (618), Expect = 1e-72
Identities = 46/318 (14%), Positives = 90/318 (28%), Gaps = 50/318 (15%)
Query: 149 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN 208
G + + + Y + ++ +L A ++ + P +A+ +
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 209 LGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDP 267
LG AI+ A P LA ++ A+ A+ + + P
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120
Query: 268 RFLEAYN---------------NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN 312
++ + + + E + L + P+ Q +LG
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG- 179
Query: 313 IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAA 372
V+Y NY A + + + P A
Sbjct: 180 ---------------------------------VLYNLSNNYDSAAANLRRAVELRPDDA 206
Query: 373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432
G T R +A+ Y RA+ I P N+A +Y + + A K +A
Sbjct: 207 QLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266
Query: 433 LLLRPDFPEATCNLLHTL 450
+ ++ T
Sbjct: 267 IYMQVGGTTPTGEASREA 284
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 219 bits (559), Expect = 2e-64
Identities = 48/313 (15%), Positives = 91/313 (29%), Gaps = 36/313 (11%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
M M K + +A +V + P R + LG + + I A
Sbjct: 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM 83
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS---------------N 106
L+P+ + +A + + + + A+ + +P + S +
Sbjct: 84 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQS 143
Query: 107 LASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
+ E AL +NP H++LG L A + A+ ++P
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203
Query: 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY 226
A W+ L AL Y A+ + P + N+ Y + A
Sbjct: 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL 263
Query: 227 QRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 286
RA+ + + E + ++ + L + R
Sbjct: 264 VRAIYMQVGG------TTPTGEASREATRSMW---------------DFFRMLLNVMNRP 302
Query: 287 DEAIQCYNQCLSL 299
D Y Q +
Sbjct: 303 DLVELTYAQNVEP 315
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 8e-49
Identities = 37/256 (14%), Positives = 74/256 (28%), Gaps = 34/256 (13%)
Query: 14 SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECY--- 70
+ A +P L + H+ + +A L +P++ +
Sbjct: 77 ALNHARML-------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVN 129
Query: 71 ------------GNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118
+ + + A+E+ PN A ++L Y +
Sbjct: 130 LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYD 189
Query: 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 178
AA R+A+ L P + LG + QEA Y AL I P + N+A
Sbjct: 190 SAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249
Query: 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLN------------LGNVYKALGMPQEAIMCY 226
+ + A + A+ ++ + + P + Y
Sbjct: 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309
Query: 227 QRAVQTRPNAIAFGNL 242
+ V+ ++
Sbjct: 310 AQNVEPFAKEFGLQSM 325
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 7e-76
Identities = 46/239 (19%), Positives = 91/239 (38%), Gaps = 5/239 (2%)
Query: 83 IDLAIRYYLVAIELRPNFADAWSNLASAY----MRKGRLNEAAQCCRQALALNPLLVDAH 138
+ + ++ + L P + S G +AA+ +A+ N +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198
N NL+ + ++ A + Y +AL + + A A+ +++ A +++A++
Sbjct: 61 INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120
Query: 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAIL 257
D + LG V L P+ A+ QRAV+ N A G D A+
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180
Query: 258 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME 316
+ DP +A+ N G ++A++ ++ + +QP H AL +
Sbjct: 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 2e-67
Identities = 38/272 (13%), Positives = 79/272 (29%), Gaps = 39/272 (14%)
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVY----KALGMPQEAIMCYQRAVQTRPN-AIAF 239
+ + ++ + L P G G ++A + +A++ AI +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
N A+ + + A+ +Y +A+ D AY GN EA + + L
Sbjct: 61 INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120
Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
+ F L + + A+
Sbjct: 121 GMENGDL----------------------------------FYMLGTVLVKLEQPKLALP 146
Query: 360 CYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419
+ ++ + G G + +A+ + P A+A N Y
Sbjct: 147 YLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK 206
Query: 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
+ E A++ +A+ ++PD A
Sbjct: 207 ENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 222 bits (569), Expect = 6e-67
Identities = 45/276 (16%), Positives = 92/276 (33%), Gaps = 39/276 (14%)
Query: 151 VQEAYSCYLEALRIQPTFAIAWSNLA----GLFMESGDLNRALQYYKEAVKLKPTFPDAY 206
+ ++ + + + P + S G E GD +A + + +A++ Y
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 207 LNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGC 265
+N N+ ++ + A+ Y +A++ + A A+ + Y + A +++A+
Sbjct: 61 INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120
Query: 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 325
+ + LG L + + A+ + + L + +A G
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL----------- 169
Query: 326 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385
+G +A+S + V DP AD N G TY
Sbjct: 170 -----------------------ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK 206
Query: 386 GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 421
A++ +AI I+P A H
Sbjct: 207 ENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 220 bits (564), Expect = 3e-66
Identities = 41/240 (17%), Positives = 77/240 (32%), Gaps = 4/240 (1%)
Query: 13 GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
+ + + + DY+ +A+ A Y N
Sbjct: 6 HHHHHSSGLVPRGSHMASMTGGQQ---MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62
Query: 73 MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
AN +++ A+ +Y A+EL + A A+ + Y+ K EA +AL
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122
Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
D LG ++ + A A+ + A G L+ AL +
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ 251
+ P DA+ N G Y ++A+ +A+ +P+ +A +
Sbjct: 183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 244 bits (624), Expect = 6e-72
Identities = 68/430 (15%), Positives = 125/430 (29%), Gaps = 60/430 (13%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYE----RNPLRTDNLLL-----LGAIYYQLHDYDM 51
M LA+ + G + ALE E + + + L +YY +
Sbjct: 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSD 112
Query: 52 CIARNEEALRLEPRFA--------ECYGNMANAWK--EKGDIDLAIRYYLVAIELRPNFA 101
++ + +F+ E + A + A+E +P
Sbjct: 113 VQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP 172
Query: 102 DAWSNLASAYMR---KGRLNEAAQCCRQALALNPLLVDAHSNLGN----LMKAQGLVQEA 154
+ S LA A R A RQA+ LNP L + + E
Sbjct: 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEG 232
Query: 155 YSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY- 213
EAL P + A + + ++A++ K+A++ P + +G Y
Sbjct: 233 EKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR 292
Query: 214 ------------------KALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADM 254
K L + A+ ++A + N LAS + Q +
Sbjct: 293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352
Query: 255 AILYYKQAIGCDPRFLEA---YNNLGNALKD-VGRVDEAIQCYNQCLSLQPSHPQALTNL 310
A Y+++ + + + GN + D+AI + + + + +
Sbjct: 353 AEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK---- 408
Query: 311 GNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL 370
M K L+ S + LA + + A L L
Sbjct: 409 ------EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462
Query: 371 AADGLVNRGN 380
G
Sbjct: 463 IPSASSWNGE 472
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 239 bits (612), Expect = 3e-70
Identities = 63/457 (13%), Positives = 133/457 (29%), Gaps = 66/457 (14%)
Query: 46 LHDYDMCIARNEEALRLEPRF------AECYGNMANAWKEKGDIDLAIRYYLVAIELR-- 97
L + + + E+ + F A +A KG + A+ A EL
Sbjct: 24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQ 83
Query: 98 -------PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP--------LLVDAHSNLG 142
W N A Y GRL++ + + + G
Sbjct: 84 EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143
Query: 143 N--LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR---ALQYYKEAVK 197
L + A C+ +AL +P S LA + A+ ++A++
Sbjct: 144 WTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203
Query: 198 LKPTFPDAYLNLGNVY----KALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQA 252
L P + L + E + A++ P + A Y + +
Sbjct: 204 LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEP 263
Query: 253 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR-------------------VDEAIQCY 293
D AI K+A+ P + +G + + A+
Sbjct: 264 DKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHL 323
Query: 294 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT---TGLSAPFNNLAVI-YK 349
+ + + + L +++ + A Y++ +
Sbjct: 324 KKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY 383
Query: 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409
Q AI + E ++I+ + + + ++I + ++ +EA
Sbjct: 384 QMKCEDKAIHHFIEGVKINQKSREKE-KMKDKLQKIAK---------MRLSKNGADSEAL 433
Query: 410 ANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
LA + + ++ A + ++ L P A+
Sbjct: 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 197 bits (503), Expect = 3e-55
Identities = 56/388 (14%), Positives = 104/388 (26%), Gaps = 60/388 (15%)
Query: 75 NAWKEKGDIDLAIRYYLVAIEL--RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
N + + +D E R A + LA KG+ A +C R+A L
Sbjct: 23 NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82
Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
+ + W N A ++ G L+ Y
Sbjct: 83 QEHADQAE-------------------------IRSLVTWGNYAWVYYHMGRLSDVQIYV 117
Query: 193 KEAVKLKPTFPDAY-LNLGNVYKALGM---------PQEAIMCYQRAVQTRP-NAIAFGN 241
+ + F Y + + G + A +C+++A++ +P N
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177
Query: 242 LASTYY---ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV----GRVDEAIQCYN 294
LA Y + AI +QAI +P L L + E +
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVE 237
Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
+ L P L + Y + A K L + + Y+ +
Sbjct: 238 EALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQ 297
Query: 355 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414
+ K + + A+ +A + + LAS
Sbjct: 298 ---------------VMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILAS 342
Query: 415 AYKDSGHVEAAIKSYKQALLLRPDFPEA 442
+ + E A +++
Sbjct: 343 LHALADQYEEAEYYFQKEFSKELTPVAK 370
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 96.5 bits (240), Expect = 4e-21
Identities = 32/229 (13%), Positives = 68/229 (29%), Gaps = 44/229 (19%)
Query: 250 GQADMAILYYKQAIGCDPRFL------EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
+ + ++ ++ + F N L G+ + A++C + L
Sbjct: 25 MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE 84
Query: 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363
+ ++ + N A +Y G +D ++
Sbjct: 85 HADQAEIRSL-------------------------VTWGNYAWVYYHMGRLSDVQIYVDK 119
Query: 364 VLRIDP--------LAADGLVNRGNTYKEIG--RVTDAIQDYIRAITIRPTMAEAHANLA 413
V + + + G T + G + A + +A+ +P E + LA
Sbjct: 120 VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLA 179
Query: 414 SAY---KDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR 459
A + + AI +QA+ L PD L L + +
Sbjct: 180 IASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEE 228
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 234 bits (600), Expect = 4e-71
Identities = 41/256 (16%), Positives = 77/256 (30%), Gaps = 5/256 (1%)
Query: 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123
A+ N + + D AI +Y A EL + +N A+A KG A
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60
Query: 124 CRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183
A+ + + + G + + A + +
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL-TEHRTADILTKLR 119
Query: 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNL 242
+ + L+ + + P + G Y A+ Y ++ P A + N
Sbjct: 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNR 179
Query: 243 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302
A+ + AI +AI DP F+ AY A V A++ + +
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239
Query: 303 HPQALTNLG--NIYME 316
+ +Y +
Sbjct: 240 VNNGSSAREIDQLYYK 255
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 227 bits (582), Expect = 1e-68
Identities = 41/247 (16%), Positives = 81/247 (32%), Gaps = 1/247 (0%)
Query: 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYY 259
+ D GN + EAI Y +A + + N A+ YE+G+ + AI
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTL 61
Query: 260 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM 319
A+ Y + + +G + + + +I +
Sbjct: 62 NDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL-TEHRTADILTKLRN 120
Query: 320 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379
+A V + Y + ++ +A+ Y E+++ P A G NR
Sbjct: 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA 180
Query: 380 NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
++ +AI D +AI P A+ A+A +A+++ A +
Sbjct: 181 AALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV 240
Query: 440 PEATCNL 446
+
Sbjct: 241 NNGSSAR 247
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 215 bits (550), Expect = 4e-64
Identities = 34/278 (12%), Positives = 77/278 (27%), Gaps = 35/278 (12%)
Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
D GN EA Y +A + +N A E G+ A+ +A
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDA 64
Query: 196 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 255
V+ Y + + +G + ++ ++ ++ A + A+
Sbjct: 65 VEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKE 124
Query: 256 ILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315
+ + +P E G A++ Y + + P +
Sbjct: 125 LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG--------- 175
Query: 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 375
++N A + ++ +AI+ N+ + DP
Sbjct: 176 -------------------------YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 210
Query: 376 VNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 413
+ + + A++ A T + +
Sbjct: 211 IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 248
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 2e-56
Identities = 44/255 (17%), Positives = 83/255 (32%), Gaps = 15/255 (5%)
Query: 10 YKSGSYKQALEHSNSVYERNPLRTDNLLL--LGAIYYQLHDYDMCIARNEEALRLEPRFA 67
YK+ + +A+EH N +E + D L A Y+ +Y+ I+ +A+
Sbjct: 16 YKARQFDEAIEHYNKAWELHK---DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR 72
Query: 68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127
Y ++ ++ G+ + IE A + + +
Sbjct: 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL-TEHRTADILTKLRNAEKELKKAEAE 131
Query: 128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187
+NP + G + A Y E ++ P A +SN A +
Sbjct: 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPE 191
Query: 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYY 247
A+ +A++ P F AY+ A+ A+ A + +
Sbjct: 192 AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA------EVNNGSS 245
Query: 248 ERGQADMAILYYKQA 262
R + LYYK +
Sbjct: 246 ARE---IDQLYYKAS 257
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 230 bits (588), Expect = 3e-69
Identities = 44/267 (16%), Positives = 88/267 (32%), Gaps = 11/267 (4%)
Query: 38 LLGAIYYQLHDYDMCIARNEEALR----LEPRFAECYGNMANAWKEKGDIDLAIRYYLVA 93
+L ++ +AR E+ L + A+ + G LA + A
Sbjct: 10 VLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQA 69
Query: 94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQE 153
+ +RP+ + ++ L + G + A + L L+P AH N G + G +
Sbjct: 70 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKL 129
Query: 154 AYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL----KPTFPDAYLNL 209
A L + P L L + D +A + K+ + + + L
Sbjct: 130 AQDDLLAFYQDDPNDPFRSLWL-YLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 188
Query: 210 GNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPR 268
GN+ + + + + + L Y G D A +K A+ +
Sbjct: 189 GNISE-QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247
Query: 269 FLEAYNNLGNALKDVGRVDEAIQCYNQ 295
+ L +G+ + + +Q
Sbjct: 248 NFVEHRYALLELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 5e-63
Identities = 38/268 (14%), Positives = 68/268 (25%), Gaps = 11/268 (4%)
Query: 70 YGNMANAWKEKGDIDLAIRYYLVAIELR----PNFADAWSNLASAYMRKGRLNEAAQCCR 125
+A + ++ + + R A Y G A
Sbjct: 8 SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS 67
Query: 126 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 185
QALA+ P + + + LG + G AY + L + PT+ A N G
Sbjct: 68 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD 127
Query: 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-----AIAFG 240
A + P P L L + L ++A ++ + I
Sbjct: 128 KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD-EKQAKEVLKQHFEKSDKEQWGWNIVEF 186
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
L E+ + E LG +G +D A + ++
Sbjct: 187 YLG-NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYK 328
+ +
Sbjct: 246 VHNFVEHRYALLELSLLGQDQDDLAESD 273
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 9e-63
Identities = 42/263 (15%), Positives = 72/263 (27%), Gaps = 7/263 (2%)
Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233
L + L R Q G +Y +LG+ A + +A+ R
Sbjct: 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR 73
Query: 234 PN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292
P+ F L + G D A + + DP + A+ N G AL GR A
Sbjct: 74 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD 133
Query: 293 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY---- 348
P+ P L + + A + N+ Y
Sbjct: 134 LLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK--EQWGWNIVEFYLGNI 191
Query: 349 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA 408
+Q + + + ++ G Y +G + A + A+
Sbjct: 192 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251
Query: 409 HANLASAYKDSGHVEAAIKSYKQ 431
H G + + Q
Sbjct: 252 HRYALLELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 6e-54
Identities = 39/255 (15%), Positives = 70/255 (27%), Gaps = 9/255 (3%)
Query: 205 AYLNLGNVYKALGMPQEAIMCYQRAVQTRP-----NAIAFGNLASTYYERGQADMAILYY 259
L + + + ++ + +R A Y G +A +
Sbjct: 7 KSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDF 66
Query: 260 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM 319
QA+ P E +N LG L G D A + ++ L L P++ A N G
Sbjct: 67 SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 126
Query: 320 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379
A A L + ++ A + G
Sbjct: 127 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK-QAKEVLKQHFEKSDKEQWGWNIVE 185
Query: 380 N---TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
E + D ++ ++E + L Y G +++A +K A+
Sbjct: 186 FYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245
Query: 437 PDFPEATCNLLHTLQ 451
L L
Sbjct: 246 VHNFVEHRYALLELS 260
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 5e-34
Identities = 36/184 (19%), Positives = 58/184 (31%), Gaps = 5/184 (2%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLS----LQPSHPQALTNLGNIYMEWNMLPAAASY 326
L L+ + + + Q L+ Q L G +Y + A +
Sbjct: 6 RKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARND 65
Query: 327 YKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 386
+ LA+ + FN L + Q GN+ A ++ VL +DP +NRG G
Sbjct: 66 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 125
Query: 387 RVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
R A D + P L A + + A + KQ +
Sbjct: 126 RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWGWNIV 184
Query: 447 LHTL 450
L
Sbjct: 185 EFYL 188
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 2e-67
Identities = 40/265 (15%), Positives = 85/265 (32%), Gaps = 15/265 (5%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA---AQC 123
+ A+ + + AI + + N ++ A Y + + A +
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62
Query: 124 CRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183
+ G ++ +G A Y A+ T + + F G
Sbjct: 63 YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122
Query: 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNL 242
+ A+QY ++ ++ T P + LG Y +A + + ++ +PN I +
Sbjct: 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR 182
Query: 243 ASTYYERGQA---DMAILYYKQAI--------GCDPRFLEAYNNLGNALKDVGRVDEAIQ 291
A + +A YY++ I +EA + +A
Sbjct: 183 ARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242
Query: 292 CYNQCLSLQPSHPQALTNLGNIYME 316
+ L+L P++ +A+ L
Sbjct: 243 AWKNILALDPTNKKAIDGLKMKLEH 267
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 216 bits (553), Expect = 3e-64
Identities = 38/294 (12%), Positives = 76/294 (25%), Gaps = 33/294 (11%)
Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA---YSC 157
D A + EA + + A ++ A
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62
Query: 158 YLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
Y + + + + M+ G + A+Q Y+ AV T D Y +G+ + G
Sbjct: 63 YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122
Query: 218 MPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL 276
AI ++ ++ F L YY + A + + + P Y
Sbjct: 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR 182
Query: 277 GNA---LKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 333
A + A Y + + + + +A
Sbjct: 183 ARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD---------------ELIEA---- 223
Query: 334 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR 387
+A Y + A + + +L +DP + +
Sbjct: 224 -------NEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 2e-63
Identities = 41/304 (13%), Positives = 77/304 (25%), Gaps = 46/304 (15%)
Query: 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
+N D + + EA + + + ++ A + E + A
Sbjct: 1 MND---DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQ 57
Query: 190 QY---YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLAST 245
+ Y V + G + G AI YQ AV +G + S
Sbjct: 58 KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 246 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 305
+Y +G +AI Y ++ I + + LG A +A + + L L+P+
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177
Query: 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVL 365
A Y +++
Sbjct: 178 GYLWRARANAA-------------------------------QDPDTKQGLAKPYYEKLI 206
Query: 366 RIDPLAADGLV--------NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417
+ Y A + + + PT +A L +
Sbjct: 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266
Query: 418 DSGH 421
H
Sbjct: 267 HHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 213 bits (545), Expect = 3e-63
Identities = 52/264 (19%), Positives = 83/264 (31%), Gaps = 15/264 (5%)
Query: 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILY--- 258
D + EAI + + + N + A YYE + D+A
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62
Query: 259 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 318
Y + + G L G+ AIQ Y + + +G+ +
Sbjct: 63 YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122
Query: 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNR 378
P A Y + + TT F L Y Y A S + +VL + P G + R
Sbjct: 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR 182
Query: 379 GNTYKEIGRVTD---AIQDYIRAITIRPT--------MAEAHANLASAYKDSGHVEAAIK 427
T A Y + I + + EA+ +A Y + A
Sbjct: 183 ARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242
Query: 428 SYKQALLLRPDFPEATCNLLHTLQ 451
++K L L P +A L L+
Sbjct: 243 AWKNILALDPTNKKAIDGLKMKLE 266
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 8e-48
Identities = 29/214 (13%), Positives = 62/214 (28%), Gaps = 6/214 (2%)
Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI---Q 291
N A ++ AI + + YN ++ + D A +
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 292 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 351
Y ++ + G I M+ A Y+A + T + + + +
Sbjct: 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK 121
Query: 352 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 411
GN+ AI + +R G Y A +++ + ++P + +
Sbjct: 122 GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLW 181
Query: 412 LASAYKDSGHV---EAAIKSYKQALLLRPDFPEA 442
A A A Y++ + +
Sbjct: 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 1e-45
Identities = 37/225 (16%), Positives = 71/225 (31%), Gaps = 14/225 (6%)
Query: 10 YKSGSYKQALEHSNSVY---ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF 66
Y+ Y A + + + ++ + G I + + I + + A+ +
Sbjct: 48 YELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR 107
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
+ YG + + + KG+ LAI+Y I + L AY +A +
Sbjct: 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLV---QEAYSCYLEALRIQPT--------FAIAWSNL 175
L L P + + AQ A Y + + + A +
Sbjct: 168 VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI 227
Query: 176 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 220
A + + D +A +K + L PT A L +
Sbjct: 228 AYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHHH 272
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 4e-67
Identities = 44/228 (19%), Positives = 81/228 (35%), Gaps = 23/228 (10%)
Query: 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCR 125
+ + G D A+ + A++ P +A LA ++ G +N A + +
Sbjct: 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGK 63
Query: 126 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 185
+A P + + L + + G L
Sbjct: 64 TLVARTPRYLGGYMVLSE-----------------------AYVALYRQAEDRERGKGYL 100
Query: 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAST 245
+AL K+A ++ P + +L G VY LG +A ++A+ LA
Sbjct: 101 EQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAEL 160
Query: 246 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293
Y G+ D A+ Y +A+ P+ L+ +AL G+ +EA +
Sbjct: 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAA 208
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 5e-62
Identities = 48/214 (22%), Positives = 80/214 (37%), Gaps = 12/214 (5%)
Query: 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLV 92
N L LG Y L YD + E AL+ P+ E +A + G ++ A+
Sbjct: 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64
Query: 93 AIELRPNFADAWSNLASAYM-----------RKGRLNEAAQCCRQALALNPLLVDAHSNL 141
+ P + + L+ AY+ KG L +A + A +NP H
Sbjct: 65 LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124
Query: 142 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 201
G + G +A + +AL ++ S LA L++ G L+ AL Y +A++ P
Sbjct: 125 GLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPK 183
Query: 202 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
D + + G +EA +
Sbjct: 184 DLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 9e-62
Identities = 45/246 (18%), Positives = 77/246 (31%), Gaps = 47/246 (19%)
Query: 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILY 258
T L LG ALG A+ ++RA++ P A LA T + G + A+
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 259 YKQAIGCDPRFLEAYNNLGNALKDV-----------GRVDEAIQCYNQCLSLQPSHPQAL 307
K + PR+L Y L A + G +++A+ + P +
Sbjct: 62 GKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121
Query: 308 TNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
G +Y G A + + L +
Sbjct: 122 LQRGLVY----------------------------------ALLGERDKAEASLKQALAL 147
Query: 368 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 427
+ + Y +GR+ +A+ Y +A+ P + ASA G E A +
Sbjct: 148 ED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR 206
Query: 428 SYKQAL 433
+
Sbjct: 207 AAALEH 212
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 5e-59
Identities = 48/268 (17%), Positives = 79/268 (29%), Gaps = 57/268 (21%)
Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
LG + A G A + + AL+ P A LA ++ G +N AL+ K
Sbjct: 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTL 65
Query: 196 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 255
V P + Y+ L Y AL +G + A
Sbjct: 66 VARTPRYLGGYMVLSEAYVALYR----------------------QAEDRERGKGYLEQA 103
Query: 256 ILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315
+ K A +PR+ + G +G D+A Q L+L+ P+ + L +Y
Sbjct: 104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELY- 161
Query: 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 375
G +A++ Y + L P D
Sbjct: 162 ---------------------------------LSMGRLDEALAQYAKALEQAPKDLDLR 188
Query: 376 VNRGNTYKEIGRVTDAIQDYIRAITIRP 403
V + G+ +A +
Sbjct: 189 VRYASALLLKGKAEEAARAAALEHHHHH 216
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 221 bits (566), Expect = 2e-66
Identities = 49/240 (20%), Positives = 86/240 (35%), Gaps = 4/240 (1%)
Query: 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
+ + ++ +G L + R DA+ L Y+++G +A R+AL
Sbjct: 7 HHHHSSGLVPRGSHMGDQNP-LKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE 65
Query: 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
++P DAH+ L + + + + A Y +AL A +N G E A
Sbjct: 66 IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAY 125
Query: 190 QYYKEAVK--LKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTY 246
Q EA + L P + NLG V + P +A ++++++ N +A
Sbjct: 126 QRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLL 185
Query: 247 YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 306
Y+ + A YY + + K D A Q L P +
Sbjct: 186 YKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 1e-62
Identities = 42/280 (15%), Positives = 91/280 (32%), Gaps = 38/280 (13%)
Query: 137 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAV 196
H + + + +G L+ + + A+ L +++ G+ +A ++A+
Sbjct: 6 HHHHHSSGLVPRGSHMGD-QNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL 64
Query: 197 KLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMA 255
++ P+ DA+ L V++ P+ A Y++A+ + A N YE+ + + A
Sbjct: 65 EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEA 124
Query: 256 ILYYKQAIGC--DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 313
+A P + NLG + + +A + + + L L + P
Sbjct: 125 YQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVA------ 178
Query: 314 YMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD 373
+A + ++ Y A Y+ + A
Sbjct: 179 ----------------------------LEMADLLYKEREYVPARQYYDLFAQGGGQNAR 210
Query: 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 413
L+ K A ++ + P E A
Sbjct: 211 SLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA 250
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 2e-60
Identities = 43/248 (17%), Positives = 77/248 (31%), Gaps = 6/248 (2%)
Query: 198 LKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAI 256
+ + + + G V + M + + + R A+ L Y +RG + A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGDQN---PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAK 57
Query: 257 LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME 316
+ ++A+ DP +A+ L + A + Y + L+ + + L N G E
Sbjct: 58 VPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117
Query: 317 WNMLPAAASYYKATLAVT--TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG 374
A T S F NL ++ Q A A + + LR++
Sbjct: 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSV 177
Query: 375 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434
+ + + A Q Y A + K + A Q
Sbjct: 178 ALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237
Query: 435 LRPDFPEA 442
L P E
Sbjct: 238 LYPGSLEY 245
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 6e-55
Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 2/200 (1%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
LG Y Q + + +AL ++P A+ + +A ++ + + LA Y A+
Sbjct: 43 LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS 102
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALA--LNPLLVDAHSNLGNLMKAQGLVQEAYS 156
A +N + R EA Q +A L P NLG + +A
Sbjct: 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162
Query: 157 CYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 216
+ ++LR+ +A L + + A QYY + + L + K
Sbjct: 163 YFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVF 222
Query: 217 GMPQEAIMCYQRAVQTRPNA 236
A + + P +
Sbjct: 223 EDRDTAASYGLQLKRLYPGS 242
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 4e-31
Identities = 32/178 (17%), Positives = 49/178 (27%), Gaps = 2/178 (1%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
H ALA K A E + L G Y+ Y+ R EA +
Sbjct: 74 HAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133
Query: 62 --LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNE 119
L P + + N+ + A Y+ ++ L N +A ++
Sbjct: 134 DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193
Query: 120 AAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAG 177
A Q + L K A S L+ R+ P A
Sbjct: 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQAE 251
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 1e-21
Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Query: 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401
++ ++ + + + A D + G Y + G A +A+ I
Sbjct: 10 HSSGLVPRGSHMGDQN---PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI 66
Query: 402 RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
P+ A+AHA LA ++ + A + Y++AL N
Sbjct: 67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 3e-62
Identities = 62/374 (16%), Positives = 127/374 (33%), Gaps = 48/374 (12%)
Query: 2 HMAL---AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEE 58
HMA QM + E + V ++ D L Y++ H + + ++
Sbjct: 20 HMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQD 79
Query: 59 ALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118
+ +++ ++ + A A A +
Sbjct: 80 V--------------------QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYS 119
Query: 119 -EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAG 177
EA +A+ L P LV+A + LG + +G V A++C+ AL ++ NL+
Sbjct: 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSM 178
Query: 178 LFMESG---------DLNRALQYYKEAVKLKPTFPDAYLNLGNVY--------KALGMPQ 220
+ + + +++ K AV++ ++ LGN Y + + Q
Sbjct: 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238
Query: 221 EAIMCYQRAVQTRP----NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL 276
+A+ Y +A + N N A+ + A+ + QA DP + E
Sbjct: 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298
Query: 277 GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT- 335
L+ + R+ ++ + + ++ + +AS K TL +
Sbjct: 299 QQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPL 358
Query: 336 -GLSAPFNNLAVIY 348
L N+ V+
Sbjct: 359 STLQPGVNSGTVVL 372
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 180 bits (457), Expect = 5e-49
Identities = 63/419 (15%), Positives = 123/419 (29%), Gaps = 66/419 (15%)
Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP-------QEAIMCYQRAVQTR 233
E + LQ + V F D+Y +V A ++ + + + +
Sbjct: 39 EEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSA 98
Query: 234 PN-AIAFGNLASTYYERGQADM-AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 291
A A A + +A+ +P +EA+N LG G V A
Sbjct: 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHT 158
Query: 292 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 351
C++ L+ + +L NL + + +
Sbjct: 159 CFSGALTHCKNKV-SLQNLSMVLRQLQTDSG-------------------------DEHS 192
Query: 352 GNYADAISCYNEVLRIDPLAADGLVNRGNTY--------KEIGRVTDAIQDYIRAITIRP 403
+ D++ +++D L GN Y + A+ Y +A +
Sbjct: 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252
Query: 404 TM---AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRD 460
+ H N A+ +K A++ + QA L P +PE L+ +
Sbjct: 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL 312
Query: 461 RMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPF 520
+ + + S+L S++P H P S + + S P
Sbjct: 313 ESKGK----TKPKKLQSMLGSLRPAH--LGPCGDGRYQSASGQKMTLELKPLSTLQ-PGV 365
Query: 521 NHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDG 579
N + +V + + P + + + V Y + + G
Sbjct: 366 NSGTVV---------LGKVVFSLTTEEKVPFTFGLVD----SDGPCYAVMVYNVVQSWG 411
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 164 bits (415), Expect = 2e-43
Identities = 50/328 (15%), Positives = 105/328 (32%), Gaps = 29/328 (8%)
Query: 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDM-CIARNEEALRLEPRFAECYGNM 73
++ L+ V + L+L G DY +A++LEP E + +
Sbjct: 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQL 143
Query: 74 ANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM---------RKGRLNEAAQCC 124
+ +KGD+ A + A+ N + NL+ + ++ +
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202
Query: 125 RQALALNPLLVDAHSNLGN--------LMKAQGLVQEAYSCYLEALRIQ---PTFAIAWS 173
+ A+ ++ L + LGN + + Q+A S Y +A ++ +
Sbjct: 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHL 262
Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233
N A L AL+ + +A L P +P+ + + L + + +
Sbjct: 263 NRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKK 322
Query: 234 PNAIA-------FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 286
++ G Y+ L K P LG + +
Sbjct: 323 LQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPGVNSGTVVLGKVVFSLTTE 382
Query: 287 DEAIQCYNQCLSLQPSHPQALTNLGNIY 314
++ + S P + + N+ +
Sbjct: 383 EKVPFTFGLVDSDGPCYAVMVYNVVQSW 410
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 4e-15
Identities = 26/208 (12%), Positives = 47/208 (22%), Gaps = 10/208 (4%)
Query: 14 SYKQALE----HSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC 69
K A++ S Y G A+ E+ R +
Sbjct: 201 QAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDL 260
Query: 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
+ N A K + A+ + A L P + + RL + +
Sbjct: 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKP 320
Query: 130 ------LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183
L L G+ Q+ +QP L +
Sbjct: 321 KKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPGVNSGTVVLGKVVFSLT 380
Query: 184 DLNRALQYYKEAVKLKPTFPDAYLNLGN 211
+ + P + N+
Sbjct: 381 TEEKVPFTFGLVDSDGPCYAVMVYNVVQ 408
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 6e-57
Identities = 28/184 (15%), Positives = 64/184 (34%), Gaps = 1/184 (0%)
Query: 60 LRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNE 119
+ + Y + + + G A+ + D +L AY++ G ++
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 120 AAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF 179
+ ++LA P V + LG A ++ P L
Sbjct: 61 GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120
Query: 180 MESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIA 238
G + A+ +K A+ L+P + + Y+ +G +EA+ +++A + ++
Sbjct: 121 DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180
Query: 239 FGNL 242
+
Sbjct: 181 LALV 184
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 2e-54
Identities = 38/208 (18%), Positives = 73/208 (35%), Gaps = 34/208 (16%)
Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
+ + + ++ + G+ A++ +Q D ++ +LG A G VD +
Sbjct: 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLE 66
Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
+ L+ P + + T LG Y Q Y
Sbjct: 67 RSLADAPDNVKVATVLGLTY----------------------------------VQVQKY 92
Query: 355 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414
A+ +V +P+ + G +GR +AI + A+ +RP + H +A
Sbjct: 93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAF 152
Query: 415 AYKDSGHVEAAIKSYKQALLLRPDFPEA 442
+Y+ G E A+ +K+A L
Sbjct: 153 SYEQMGRHEEALPHFKKANELDEGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 2e-51
Identities = 30/176 (17%), Positives = 65/176 (36%), Gaps = 3/176 (1%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
G + + Y + E+ + + ++ A+ + G +D ++ P
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCY 158
+ + L Y++ + + A + NP+ + LG + G EA +
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133
Query: 159 LEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214
AL ++P +A + + G AL ++K+A +L A + L V +
Sbjct: 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD---EGASVELALVPR 186
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 6e-44
Identities = 32/189 (16%), Positives = 52/189 (27%), Gaps = 34/189 (17%)
Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 322
+G D Y + G + GR +A+ Q +LG Y
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAY-------- 52
Query: 323 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY 382
+ G L P G TY
Sbjct: 53 --------------------------VKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86
Query: 383 KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
++ + A+ I+ P L A + G + AI S+K AL LRP+ +
Sbjct: 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKV 146
Query: 443 TCNLLHTLQ 451
+ + +
Sbjct: 147 HRAIAFSYE 155
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 199 bits (509), Expect = 2e-56
Identities = 73/391 (18%), Positives = 127/391 (32%), Gaps = 86/391 (21%)
Query: 35 NLLLLGAIYYQLHDYDMCIARNEEALRL------EPRFAECYGNMANAWKEKGDIDLAIR 88
+ L ++ + GD +
Sbjct: 10 SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69
Query: 89 YYLVAIEL----RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN------PLLVDAH 138
++ AI+ + +S L +AY G N+A Q + L L +
Sbjct: 70 FFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129
Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRI------QPTFAIAWSNLAGLFMESGD-------- 184
NLGN +K G EA C L + + + A NL ++ G
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPG 189
Query: 185 ---------LNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCYQRA 229
L RA+++Y+E +KL D A NLGN Y LG Q AI +Q
Sbjct: 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249
Query: 230 VQ-------TRPNAIAFGNLASTYYERGQADMAILYYKQA------IGCDPRFLEAYNNL 276
++ A NL +++ GQ + A +YK+ +G ++ +L
Sbjct: 250 LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL 309
Query: 277 GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG 336
GN + + AI+ +N+ L++ LG+ E A +
Sbjct: 310 GNTYTLLHEFNTAIEYHNRHLAIAQE-------LGDRIGE------ARAC---------- 346
Query: 337 LSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
+L + G + A+ + L++
Sbjct: 347 -----WSLGNAHSAIGGHERALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 4e-56
Identities = 71/402 (17%), Positives = 118/402 (29%), Gaps = 84/402 (20%)
Query: 72 NMANAWKEKGDIDLAIRYYLVAIEL------RPNFADAWSNLASAYMRKGRLNEAAQCCR 125
+ G + + + + G +
Sbjct: 13 AENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQ 72
Query: 126 QALALN----PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI------QPTFAIAWSNL 175
A+ L +S LGN G +A + L + + A + NL
Sbjct: 73 AAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132
Query: 176 AGLFMESGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCYQRA 229
G + A + + L D A NLGNVY A G +
Sbjct: 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFG 192
Query: 230 VQTRPNAIAFGNLASTYYERGQADMAILYYKQA------IGCDPRFLEAYNNLGNALKDV 283
+ A+ +Y++ +G A NLGN +
Sbjct: 193 DDVK----------------EALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL 236
Query: 284 GRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT--- 334
G AI+ + + L + + + +A +NLGN ++ AA +YK TLA+
Sbjct: 237 GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL 296
Query: 335 ---TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA 391
+ +L Y + AI +N L I +E+G
Sbjct: 297 GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI--------------AQELGD---- 338
Query: 392 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
R A A +L +A+ G E A+K +Q L
Sbjct: 339 ----------RIGEARACWSLGNAHSAIGGHERALKYAEQHL 370
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 2e-47
Identities = 59/352 (16%), Positives = 113/352 (32%), Gaps = 82/352 (23%)
Query: 137 AHSNLGNLMKAQGLVQEAYSCYLEALRI------QPTFAIAWSNLAGLFMESGDLNRALQ 190
+ N+ +L G + + + + + + +GD +
Sbjct: 12 SAENVSSL--GLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69
Query: 191 YYKEAVKLK----PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-------AIAF 239
+++ A++ T Y LGN Y LG +A+ ++ + + A +
Sbjct: 70 FFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129
Query: 240 GNLASTYYERGQADMAILYYKQA------IGCDPRFLEAYNNLGNALKDVGR-------- 285
GNL +T G+ D A + ++ +G A NLGN G+
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPG 189
Query: 286 ---------VDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
+ A++ Y + L L + + +A NLGN Y AA +++
Sbjct: 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249
Query: 331 LAVT------TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 384
L + +NL + G + DA Y L + E
Sbjct: 250 LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL--------------AVE 295
Query: 385 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
+G R A++ +L + Y AI+ + + L +
Sbjct: 296 LGE--------------REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 1e-36
Identities = 52/284 (18%), Positives = 87/284 (30%), Gaps = 52/284 (18%)
Query: 205 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYERGQADMAIL 257
+ LG + Q + G +
Sbjct: 10 SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69
Query: 258 YYKQAI----GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS---HP---QAL 307
+++ AI Y+ LGNA +G ++A+Q + L+L S ++
Sbjct: 70 FFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129
Query: 308 TNLGNIYMEWNMLPAAASYYKATLAVT------TGLSAPFNNLAVIYKQQGNYAD----- 356
NLGN AA + L + NL +Y +G +
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPG 189
Query: 357 ------------AISCYNEVLRID------PLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398
A+ Y E L++ N GNTY +G AI+ +
Sbjct: 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249
Query: 399 ITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
+ I R A++NL +++ G E A + YK+ L L
Sbjct: 250 LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-24
Identities = 33/235 (14%), Positives = 59/235 (25%), Gaps = 48/235 (20%)
Query: 235 NAIAFGNLASTYYERGQADMAILYYKQA------IGCDPRFLEAYNNLGNALKDVGRVDE 288
++++ + G + G L + G
Sbjct: 7 SSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRA 66
Query: 289 AIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY 348
+ + + + L +A Y + L Y
Sbjct: 67 GVAFFQAAIQAGTEDLRTL---------------SAIY---------------SQLGNAY 96
Query: 349 KQQGNYADAISCYNEVLRI------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI- 401
G+Y A+ + L + A N GNT K +GR +A R +T+
Sbjct: 97 FYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA 156
Query: 402 -----RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
R + A NL + Y G K ++ A L+
Sbjct: 157 RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 2e-55
Identities = 48/216 (22%), Positives = 77/216 (35%), Gaps = 6/216 (2%)
Query: 95 ELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154
E ++ + LA YMR +A AL +P A + + + +A
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61
Query: 155 YSCYLEALRIQPTFAIAWSNLAG-LFMESGDLNRALQYYKEAVK--LKPTFPDAYLNLGN 211
+ +AL I+P A +N L ++ Y+ +A+ PT A LN G
Sbjct: 62 QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121
Query: 212 VYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 270
G A +R++ +P AF LA T GQ A Y+K+
Sbjct: 122 CSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL- 180
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 306
++L K + A Y LQ + P +
Sbjct: 181 -QADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYS 215
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 9e-51
Identities = 39/217 (17%), Positives = 74/217 (34%), Gaps = 5/217 (2%)
Query: 229 AVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE 288
A + + LA Y A + A+ DP+ A+ + + D+
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDK 60
Query: 289 AIQCYNQCLSLQPSHPQALTNLGNI-YMEWNMLPAAASYYKATLAVTT--GLSAPFNNLA 345
A + + Q LS++P + N G N + +Y+ LA T N
Sbjct: 61 AQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKG 120
Query: 346 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM 405
+ +QG + A + L P T G++ DA + + + +
Sbjct: 121 ICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180
Query: 406 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
L +K + + A +Y+ L+ +FP +
Sbjct: 181 QADDLLL--GWKIAKALGNAQAAYEYEAQLQANFPYS 215
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 1e-47
Identities = 50/200 (25%), Positives = 77/200 (38%), Gaps = 5/200 (2%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
L Y + DY A E+AL+ +P+ + A ++ D A + A+ ++P
Sbjct: 14 LAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP 73
Query: 99 NFADAWSNLASA-YMRKGRLNEAAQCCRQALA--LNPLLVDAHSNLGNLMKAQGLVQEAY 155
+ A+ +N R R E+ +ALA P A+ N G QG A
Sbjct: 74 DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE 133
Query: 156 SCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA 215
+ +L QP F A+ LA M +G L A Y+K+ L LG +K
Sbjct: 134 AYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG--WKI 191
Query: 216 LGMPQEAIMCYQRAVQTRPN 235
A Y+ Q + N
Sbjct: 192 AKALGNAQAAYEYEAQLQAN 211
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 1e-46
Identities = 39/252 (15%), Positives = 76/252 (30%), Gaps = 40/252 (15%)
Query: 166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMC 225
+ + LA +M D +A ++A+K P A+L +Y+ L + +A
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64
Query: 226 YQRAVQTRPN-AIAFGNLASTYYER-GQADMAILYYKQAIGCD--PRFLEAYNNLGNALK 281
+++A+ +P+ A N R + ++ Y+ +A+ P A N G
Sbjct: 65 FRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA 124
Query: 282 DVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPF 341
G+ A + L+ QP P A L M
Sbjct: 125 KQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML------------------------- 159
Query: 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401
G DA + + + + +K + +A Y +
Sbjct: 160 ---------AGQLGDADYYFKKYQSRVEVLQA--DDLLLGWKIAKALGNAQAAYEYEAQL 208
Query: 402 RPTMAEAHANLA 413
+ +
Sbjct: 209 QANFPYSEELQT 220
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 2e-23
Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 5/174 (2%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYY-QLHDYDMCIARNEEAL 60
+ A +A E P + G +L+ +A ++AL
Sbjct: 45 WLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKAL 104
Query: 61 R--LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118
P N ++G LA Y ++ +P F A+ LA M G+L
Sbjct: 105 ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164
Query: 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 172
+A ++ + V +L K + A + Y ++Q F +
Sbjct: 165 DADYYFKKYQSRVE--VLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 16/78 (20%), Positives = 26/78 (33%)
Query: 369 PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS 428
++ Y A A+ P A A Y+ + A +S
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64
Query: 429 YKQALLLRPDFPEATCNL 446
++QAL ++PD E N
Sbjct: 65 FRQALSIKPDSAEINNNY 82
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 10/50 (20%), Positives = 13/50 (26%)
Query: 402 RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
++ LA Y A S + AL P A Q
Sbjct: 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQ 53
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 2e-54
Identities = 76/433 (17%), Positives = 145/433 (33%), Gaps = 98/433 (22%)
Query: 36 LLLLGAIYYQLHDYDMCIARNEEALRLE----PRFAECYGNMANAWKEKGDIDLAIRYYL 91
L L G + D ++ E A+++ + Y + NA+ D A+ Y+
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71
Query: 92 VAIEL------RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN------PLLVDAHS 139
+ L + A A NL + G +EA CC++ L ++ A
Sbjct: 72 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131
Query: 140 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 199
NLGN+ A+G + L A+ +Y+E + L
Sbjct: 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEV--------------RDALQAAVDFYEENLSLV 177
Query: 200 PTFPD------AYLNLGNVYKALGMPQEAIMCYQRAVQ-------TRPNAIAFGNLASTY 246
D A+ NLGN + LG ++A++ +++ + A+ NL + Y
Sbjct: 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 237
Query: 247 YERGQADMAILYYKQA------IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
G+ + A YYK+ + ++ +LGN + ++AI + + L++
Sbjct: 238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
Q L + + +L Y GN+ A+
Sbjct: 298 ----QELNDRIGE---------GRAC---------------WSLGNAYTALGNHDQAMHF 329
Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
+ L I +E+G D +T R +++ L +Y +
Sbjct: 330 AEKHLEI--------------SREVG-------DKSGELTARLNLSDLQMVLGLSYSTNN 368
Query: 421 HVEAAIKSYKQAL 433
+ + +L
Sbjct: 369 SIMSENTEIDSSL 381
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 190 bits (486), Expect = 2e-53
Identities = 69/384 (17%), Positives = 114/384 (29%), Gaps = 59/384 (15%)
Query: 97 RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN----PLLVDAHSNLGNLMKAQGLVQ 152
+ + G A+ + L +S LGN
Sbjct: 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA 64
Query: 153 EAYSCYLEALRI------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD-- 204
+A + L + Q A A NL G+ + A+ + + + D
Sbjct: 65 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV 124
Query: 205 ----AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYK 260
A NLGNVY A G A A+ +Y+
Sbjct: 125 GEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL-------------QAAVDFYE 171
Query: 261 QA------IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALT 308
+ +G A+ NLGN +G +A+ + Q L + + + +A +
Sbjct: 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYS 231
Query: 309 NLGNIYMEWNMLPAAASYYKATLAVT------TGLSAPFNNLAVIYKQQGNYADAISCYN 362
NLGN Y+ A+ YYK TL + + +L Y +Y AI +
Sbjct: 232 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291
Query: 363 EVLRID------PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI------RPTMAEAHA 410
+ L I + GN Y +G A+ + + I + A
Sbjct: 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARL 351
Query: 411 NLASAYKDSGHVEAAIKSYKQALL 434
NL+ G + S
Sbjct: 352 NLSDLQMVLGLSYSTNNSIMSENT 375
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 9e-50
Identities = 71/352 (20%), Positives = 122/352 (34%), Gaps = 63/352 (17%)
Query: 126 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ----PTFAIAWSNLAGLFME 181
L L G + G + S + A+++ T + +S L +
Sbjct: 8 SCLELA--------LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY 59
Query: 182 SGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
D +AL+Y+ + L T D A NLGN K LG EAI+C QR +
Sbjct: 60 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 119
Query: 236 -------AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE 288
A A NL + Y+ +G++ + +
Sbjct: 120 LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVG--------------EFPEEVRDALQA 165
Query: 289 AIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT------TG 336
A+ Y + LSL + + +A NLGN + A ++ L +
Sbjct: 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA 225
Query: 337 LSAPFNNLAVIYKQQGNYADAISCYNEVLRID------PLAADGLVNRGNTYKEIGRVTD 390
++NL Y G + A Y + L + + A + GNTY +
Sbjct: 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 285
Query: 391 AIQDYIRAITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
AI +++ + I R A +L +AY G+ + A+ ++ L +
Sbjct: 286 AIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 2e-51
Identities = 68/368 (18%), Positives = 125/368 (33%), Gaps = 77/368 (20%)
Query: 35 NLLLLGAIYYQLHDYDMCIARNEEALRLE----PRFAECYGNMANAWKEKGDIDLAIRYY 90
L L G + D ++ E A+++ + Y + NA+ D A+ Y+
Sbjct: 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH 66
Query: 91 LVAIEL------RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN------PLLVDAH 138
+ L + A A NL + G +EA CC++ L ++ A
Sbjct: 67 HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARAL 126
Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198
NLGN+ A+G + L A+ Y+E + L
Sbjct: 127 YNLGNVYHAKGKSFGCPGPQDTGEFPED--------------VRNALQAAVDLYEENLSL 172
Query: 199 KPTFPD------AYLNLGNVYKALGMPQEAIMCYQRAVQ-------TRPNAIAFGNLAST 245
D A+ NLGN + LG ++A++ +++ + A+ NL +
Sbjct: 173 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 232
Query: 246 YYERGQADMAILYYKQA------IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
Y G+ + A YYK+ + ++ +LGN + ++AI + + L++
Sbjct: 233 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292
Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
L + E + +L Y GN+ A+
Sbjct: 293 AQE-------LKDRIGE------GRAC---------------WSLGNAYTALGNHDQAMH 324
Query: 360 CYNEVLRI 367
+ L I
Sbjct: 325 FAEKHLEI 332
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 6e-49
Identities = 64/329 (19%), Positives = 112/329 (34%), Gaps = 61/329 (18%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKL----KPTFPDAYLNLGNVYKALGMPQEAIM 224
+ + +SGD + +++ AV++ T Y LGN Y L +A+
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64
Query: 225 CYQRAVQTRPN-------AIAFGNLASTYYERGQADMAILYYKQA------IGCDPRFLE 271
+ + A A GNL +T G D AI+ ++ +
Sbjct: 65 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124
Query: 272 AYNNLGNALKDVGRV--------------------DEAIQCYNQCLSL------QPSHPQ 305
A NLGN G+ A+ Y + LSL + + +
Sbjct: 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGR 184
Query: 306 ALTNLGNIYMEWNMLPAAASYYKATLAVT------TGLSAPFNNLAVIYKQQGNYADAIS 359
A NLGN + A ++ L + ++NL Y G + A
Sbjct: 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244
Query: 360 CYNEVLRID------PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI------RPTMAE 407
Y + L + + A + GNTY + AI +++ + I R
Sbjct: 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304
Query: 408 AHANLASAYKDSGHVEAAIKSYKQALLLR 436
A +L +AY G+ + A+ ++ L +
Sbjct: 305 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 333
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-25
Identities = 37/234 (15%), Positives = 82/234 (35%), Gaps = 45/234 (19%)
Query: 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQL--------------------HDYDMCIA 54
++ L+ S + ++ L LG +Y+ + +
Sbjct: 106 CQRHLDISRELNDK-VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164
Query: 55 RNEEALRL------EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFAD 102
EE L L +GN+ N G+ A+ + + + +
Sbjct: 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 224
Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALN------PLLVDAHSNLGNLMKAQGLVQEAYS 156
A+SNL +AY+ G A++ ++ L L + + +LGN ++A
Sbjct: 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284
Query: 157 CYLEALRI------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 204
+L+ L I + A +L + G+ ++A+ + ++ +++ D
Sbjct: 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 338
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 164 bits (419), Expect = 1e-47
Identities = 59/134 (44%), Positives = 83/134 (61%), Gaps = 1/134 (0%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
A AW NL + + GD + A++YY++A++L P +A+ NLGN Y G EAI YQ+
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 229 AVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 287
A++ P A A+ NL + YY++G D AI YY++A+ DPR EA+ NLGNA G D
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 288 EAIQCYNQCLSLQP 301
EAI+ Y + L L P
Sbjct: 121 EAIEYYQKALELDP 134
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 154 bits (393), Expect = 4e-44
Identities = 54/135 (40%), Positives = 80/135 (59%)
Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
A+AW NL +AY ++G +EA + ++AL L+P +A NLGN QG EA Y +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 161 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 220
AL + P A AW NL + + GD + A++YY++A++L P +A+ NLGN Y G
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 221 EAIMCYQRAVQTRPN 235
EAI YQ+A++ P
Sbjct: 121 EAIEYYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 8e-42
Identities = 55/168 (32%), Positives = 78/168 (46%), Gaps = 34/168 (20%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
EA+ NLGNA G DEAI+ Y + L L P +A
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA------------------------ 37
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
+ NL Y +QG+Y +AI Y + L +DP +A+ N GN Y + G +
Sbjct: 38 ----------WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 87
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
AI+ Y +A+ + P AEA NL +AY G + AI+ Y++AL L P
Sbjct: 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 147 bits (375), Expect = 1e-41
Identities = 56/134 (41%), Positives = 83/134 (61%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
AE + N+ NA+ ++GD D AI YY A+EL P A+AW NL +AY ++G +EA + ++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186
AL L+P +A NLGN QG EA Y +AL + P A AW NL + + GD +
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 187 RALQYYKEAVKLKP 200
A++YY++A++L P
Sbjct: 121 EAIEYYQKALELDP 134
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 3e-41
Identities = 61/167 (36%), Positives = 82/167 (49%), Gaps = 35/167 (20%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQA 262
+A+ NLGN Y G EAI YQ+A++ P A A+ NL + YY++G D AI YY++A
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 322
+ DPR EA+ NLGNA G DEAI+ Y + L L P +A NLGN
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN---------- 111
Query: 323 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 369
Y +QG+Y +AI Y + L +DP
Sbjct: 112 ------------------------AYYKQGDYDEAIEYYQKALELDP 134
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 2e-39
Identities = 56/168 (33%), Positives = 81/168 (48%), Gaps = 34/168 (20%)
Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
A A+ NL + YY++G D AI YY++A+ DPR EA+ NLGNA G DEAI+ Y +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 355
L L P +A + NL Y +QG+Y
Sbjct: 61 ALELDPRSAEA----------------------------------WYNLGNAYYKQGDYD 86
Query: 356 DAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403
+AI Y + L +DP +A+ N GN Y + G +AI+ Y +A+ + P
Sbjct: 87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 135 bits (344), Expect = 2e-37
Identities = 56/128 (43%), Positives = 78/128 (60%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
LG YY+ DYD I ++AL L+PR AE + N+ NA+ ++GD D AI YY A+EL P
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCY 158
A+AW NL +AY ++G +EA + ++AL L+P +A NLGN QG EA Y
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Query: 159 LEALRIQP 166
+AL + P
Sbjct: 127 QKALELDP 134
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-31
Identities = 42/111 (37%), Positives = 62/111 (55%)
Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
+ NL Y +QG+Y +AI Y + L +DP +A+ N GN Y + G +AI+ Y +A+
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
+ P AEA NL +AY G + AI+ Y++AL L P EA NL +
Sbjct: 64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 87.4 bits (218), Expect = 2e-20
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
A+ N GN Y + G +AI+ Y +A+ + P AEA NL +AY G + AI+ Y++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 432 ALLLRPDFPEATCNL 446
AL L P EA NL
Sbjct: 61 ALELDPRSAEAWYNL 75
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 61.3 bits (150), Expect = 3e-11
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 23/94 (24%)
Query: 14 SYKQALE--------HSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR 65
Y++ALE N LG YY+ DYD I ++AL L+PR
Sbjct: 57 YYQKALELDPRSAEAWYN---------------LGNAYYKQGDYDEAIEYYQKALELDPR 101
Query: 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99
AE + N+ NA+ ++GD D AI YY A+EL P
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 2e-45
Identities = 55/308 (17%), Positives = 99/308 (32%), Gaps = 49/308 (15%)
Query: 42 IYYQLHDYDMCIARNEEALRLE-PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELR--- 97
+++ H + E P N+ + +G ++A+ A+E
Sbjct: 1 MHHHHHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT 60
Query: 98 -----PNFADAWSNLASAYMRKGRLNEAAQCCRQALAL--------NPLLVDAHSNLGNL 144
P+ A + LA Y + + +AA ALA+ +P + +NL L
Sbjct: 61 SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL 120
Query: 145 MKAQGLVQEAYSCYLEALRIQ--------PTFAIAWSNLAGLFMESGDLNRALQYYKEAV 196
+G +EA AL I+ P A +NLA L G YY+ A+
Sbjct: 121 YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180
Query: 197 K-----LKPTFPD---AYLNLGNVYKALGMPQEAIMCYQRAVQTR---------PN-AIA 238
+ L P P+ NL + Y G ++A Y+ +
Sbjct: 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240
Query: 239 FGNLASTYYERGQADMAILYYKQAI-----GCD-PRFLEAYNNLGNALKDVGRVDEAIQC 292
+ + +G+ + + D P NLG + G+ + A
Sbjct: 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL 300
Query: 293 YNQCLSLQ 300
+ +
Sbjct: 301 EEAAMRSR 308
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 5e-44
Identities = 64/338 (18%), Positives = 107/338 (31%), Gaps = 88/338 (26%)
Query: 87 IRYYLVAIELR------------PNFADAWSNLASAYMRKGRLNEAAQCCRQALAL---- 130
+ ++ R P NL Y +GR A C+QAL
Sbjct: 1 MHHHHHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT 60
Query: 131 ----NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ--------PTFAIAWSNLAGL 178
+P + + L + + Q ++A + +AL I+ P A +NLA L
Sbjct: 61 SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL 120
Query: 179 FMESGDLNRALQYYKEAVK-----LKPTFPD---AYLNLGNVYKALGMPQEAIMCYQRAV 230
+ + G A K A++ L PD NL + + G +E YQRA+
Sbjct: 121 YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180
Query: 231 QTR--------PN-AIAFGNLASTYYERGQADMAILYYKQAI--------GCD-PRFLEA 272
+ PN A NLAS Y ++G+ A YK+ + G
Sbjct: 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240
Query: 273 YNNLGNALKDVGRVDEAIQCYNQCL---SLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 329
+ + + G+ + + + P T L
Sbjct: 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTL------------------- 281
Query: 330 TLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
NL +Y++QG + A + +R
Sbjct: 282 ------------KNLGALYRRQGKFEAAETLEEAAMRS 307
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 4e-43
Identities = 67/336 (19%), Positives = 101/336 (30%), Gaps = 83/336 (24%)
Query: 152 QEAYSCYLEALRIQ------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK-----P 200
S E L Q P NL + G A+ K+A++
Sbjct: 5 HHHSSGR-ENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH 63
Query: 201 TFPD---AYLNLGNVYKALGMPQEAIMCYQRAVQTR--------PN-AIAFGNLASTYYE 248
PD L VY+ ++A A+ R P A NLA Y +
Sbjct: 64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 123
Query: 249 RGQADMAILYYKQAI-------GCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
RG+ A K+A+ G D P + NNL ++ G+ +E Y + L +
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183
Query: 301 -----PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 355
P P NNLA Y +QG +
Sbjct: 184 QTKLGPDDPNVAKTK-------------------------------NNLASCYLKQGKFK 212
Query: 356 DAISCYNEVLRI---------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR---- 402
A + Y E+L D ++ + G+ D +
Sbjct: 213 QAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272
Query: 403 --PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
PT+ NL + Y+ G EAA + A+ R
Sbjct: 273 DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 4e-38
Identities = 56/302 (18%), Positives = 105/302 (34%), Gaps = 53/302 (17%)
Query: 15 YKQALEHSNSVYERN-----PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE------ 63
+ ++Y + P R L L Y Y++ + ++AL
Sbjct: 4 HHHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH 63
Query: 64 --PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELR--------PNFADAWSNLASAYMR 113
P A +A ++++ A A+ +R P A +NLA Y +
Sbjct: 64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 123
Query: 114 KGRLNEAAQCCRQALAL--------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 165
+G+ EA C++AL + +P + +NL L + QG +E Y AL I
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183
Query: 166 --------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVK------LKPTFPD---AYLN 208
P A +NLA +++ G +A YKE + + +++
Sbjct: 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH 243
Query: 209 LGNVYKALGMPQEAIMCYQRAVQTR------PN-AIAFGNLASTYYERGQADMAILYYKQ 261
+ G ++ + + P NL + Y +G+ + A +
Sbjct: 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303
Query: 262 AI 263
A+
Sbjct: 304 AM 305
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 5e-25
Identities = 48/213 (22%), Positives = 71/213 (33%), Gaps = 53/213 (24%)
Query: 246 YYERGQADMAILYYKQAIGCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ---- 300
++ + Y Q G + P L +NL GR + A+ Q L
Sbjct: 2 HHHHHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS 61
Query: 301 -PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
HP T L N LA++Y+ Q Y DA +
Sbjct: 62 GHDHPDVATML-------------------------------NILALVYRDQNKYKDAAN 90
Query: 360 CYNEVLRI--------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR--------P 403
N+ L I P A L N Y + G+ +A RA+ IR P
Sbjct: 91 LLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150
Query: 404 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
+A+ NLA ++ G E Y++AL +
Sbjct: 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 1e-15
Identities = 31/175 (17%), Positives = 54/175 (30%), Gaps = 24/175 (13%)
Query: 15 YKQALEHSNSVY-ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE--------PR 65
K+ALE V + +P L L + Y+ + AL + P
Sbjct: 134 CKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN 193
Query: 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELR---------PNFADAWSNLASAYMRKGR 116
A+ N+A+ + ++G A Y + W + KG+
Sbjct: 194 VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK 253
Query: 117 LNEAAQCCRQALALN------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 165
+ P + NLG L + QG + A + A+R +
Sbjct: 254 QKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 3e-43
Identities = 30/205 (14%), Positives = 65/205 (31%), Gaps = 17/205 (8%)
Query: 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAW----------------SNLAS 109
+ +A E G A+ Y+ I L + + + + LA
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62
Query: 110 AYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 169
AY + ++A ++ L P VD + +G ++A Y + L+++
Sbjct: 63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122
Query: 170 IAWSNLAGLFMESGDLNR-ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
A L + + + + L+ + + A G ++A Q+
Sbjct: 123 AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQK 182
Query: 229 AVQTRPNAIAFGNLASTYYERGQAD 253
+ P+ A L + +
Sbjct: 183 VILRFPSTEAQKTLDKILRIEKEVN 207
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 2e-42
Identities = 29/201 (14%), Positives = 64/201 (31%), Gaps = 18/201 (8%)
Query: 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECY----------------GNMANAW 77
D +L + + ++ + + L E Y +A A+
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAY 64
Query: 78 KEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDA 137
K+ + D A +Y ++ PN D A + +G+ +A + + L L + A
Sbjct: 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124
Query: 138 HSNLGNLMKAQG-LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAV 196
+ LGN ++ + L A + + +A ++ +
Sbjct: 125 NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184
Query: 197 KLKPTFPDAYLNLGNVYKALG 217
P+ +A L + +
Sbjct: 185 LRFPS-TEAQKTLDKILRIEK 204
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 2e-42
Identities = 36/224 (16%), Positives = 67/224 (29%), Gaps = 20/224 (8%)
Query: 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY 226
+E+G +A+ Y+++ + L + Y + +
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSK------ 55
Query: 227 QRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 286
LA Y + D A L+YK+ + P ++ G+
Sbjct: 56 -----------LATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE 104
Query: 287 DEAIQCYNQCLSLQPSHPQALTNLGNIYMEW-NMLPAAASYYKATLAVTTGLSAPFNNLA 345
+A++ Y + L L+ + A LGN Y L+ T +
Sbjct: 105 KDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG 164
Query: 346 VIYKQQGNYADAISCYNEVLRIDP--LAADGLVNRGNTYKEIGR 387
+ Y A + +V+ P A L KE+ R
Sbjct: 165 LSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 2e-41
Identities = 38/232 (16%), Positives = 67/232 (28%), Gaps = 49/232 (21%)
Query: 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNP----------------LLVDAHSNLGN 143
D SA + G+ +A RQ +ALN + + L
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62
Query: 144 LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP 203
K +AY Y E L+ P A + + G AL+ Y++ ++L+
Sbjct: 63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 263
A + LGN Y ++ + + +
Sbjct: 123 AANIFLGNYYYLTAEQEKK--------------------------------KLETDYKKL 150
Query: 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315
+ A G + R ++A + + PS +A L I
Sbjct: 151 SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKILR 201
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 4e-40
Identities = 32/247 (12%), Positives = 67/247 (27%), Gaps = 53/247 (21%)
Query: 201 TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYK 260
D L + G +A+ +++ + + + Y+
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-----------------RTEMYYWT 44
Query: 261 QAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320
+ L A K D+A Y + L P++ L + +
Sbjct: 45 NVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVC---- 100
Query: 321 PAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN 380
+G DA+ Y ++L+++ + GN
Sbjct: 101 ------------------------------RGQEKDALRMYEKILQLEADNLAANIFLGN 130
Query: 381 TYKEIGRVTD-AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
Y ++ + ++ M A + + E A S ++ +L P
Sbjct: 131 YYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS- 189
Query: 440 PEATCNL 446
EA L
Sbjct: 190 TEAQKTL 196
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 7e-32
Identities = 30/203 (14%), Positives = 63/203 (31%), Gaps = 18/203 (8%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNP----------------LRTDNLLLLGAIYYQ 45
+ ++G QA+ + N + + L Y +
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66
Query: 46 LHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS 105
+YD +E L+ P +C A +G A+R Y ++L + A
Sbjct: 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANI 126
Query: 106 NLASAYMRKG-RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164
L + Y + + + + L+ + A G ++A + + +
Sbjct: 127 FLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186
Query: 165 QPTFAIAWSNLAGLFMESGDLNR 187
P+ A L + ++NR
Sbjct: 187 FPSTE-AQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-24
Identities = 19/150 (12%), Positives = 46/150 (30%), Gaps = 2/150 (1%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
+ LA K+ +Y +A + ++ P D L + + E+ L
Sbjct: 56 LATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115
Query: 61 RLEPRFAECYGNMANAWKEKGD-IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNE 119
+LE + N + + + + A + + R +
Sbjct: 116 QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEK 175
Query: 120 AAQCCRQALALNPLLVDAHSNLGNLMKAQG 149
A ++ + P +A L +++ +
Sbjct: 176 ARNSLQKVILRFP-STEAQKTLDKILRIEK 204
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 3e-41
Identities = 51/277 (18%), Positives = 89/277 (32%), Gaps = 48/277 (17%)
Query: 72 NMANAWKEKGDIDLAIRYYLVAIELR--------PNFADAWSNLASAYMRKGRLNEAAQC 123
+ + A+ A+E P+ A + LA Y + + EAA
Sbjct: 6 HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL 65
Query: 124 CRQALAL--------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ--------PT 167
ALA+ +P + +NL L +G +EA AL I+ P
Sbjct: 66 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125
Query: 168 FAIAWSNLAGLFMESGDLNRALQYYKEAVK-----LKPTFPD---AYLNLGNVYKALGMP 219
A +NLA L G YY+ A++ L P P+ NL + Y G
Sbjct: 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185
Query: 220 QEAIMCYQRAVQTR---------PN-AIAFGNLASTYYERGQADMAILYYKQAI-----G 264
Q+A Y+ + + + + + + + Y +
Sbjct: 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245
Query: 265 CD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
D P +LG + G+++ A + +
Sbjct: 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 1e-40
Identities = 48/276 (17%), Positives = 90/276 (32%), Gaps = 48/276 (17%)
Query: 140 NLGNLMKAQGLVQEAYSCYLEALRIQ--------PTFAIAWSNLAGLFMESGDLNRALQY 191
+ + A +AL P A + LA ++ + A
Sbjct: 6 HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL 65
Query: 192 YKEAVKLK-----PTFPD---AYLNLGNVYKALGMPQEAIMCYQRAVQTR--------PN 235
+A+ ++ P NL +Y G +EA +RA++ R P+
Sbjct: 66 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125
Query: 236 -AIAFGNLASTYYERGQADMAILYYKQAI-------GCD-PRFLEAYNNLGNALKDVGRV 286
A NLA +G+A+ YY++A+ G D P + NNL + G+
Sbjct: 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185
Query: 287 DEAIQCYNQCLS------LQPSHP---QALTNLGNIYMEWNMLPAAASYYKATLAVTT-G 336
+A Y + L+ + + + +A Y +
Sbjct: 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245
Query: 337 LSAP-----FNNLAVIYKQQGNYADAISCYNEVLRI 367
+ +P +L +Y++QG A + + R
Sbjct: 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 3e-40
Identities = 58/308 (18%), Positives = 92/308 (29%), Gaps = 76/308 (24%)
Query: 174 NLAGLFMESGDLNRALQYYKEAVKLK-----PTFPD---AYLNLGNVYKALGMPQEAIMC 225
+ A+ K+A++ PD L VY+ +EA
Sbjct: 6 HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL 65
Query: 226 YQRAVQTR--------PN-AIAFGNLASTYYERGQADMAILYYKQAI-------GCD-PR 268
A+ R P A NLA Y +RG+ A K+A+ G P
Sbjct: 66 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125
Query: 269 FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-----PSHPQALTNLGNIYMEWNMLPAA 323
+ NNL ++ G+ +E Y + L + P P
Sbjct: 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK------------- 172
Query: 324 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI---------DPLAADG 374
NNLA Y +QG Y DA + Y E+L +
Sbjct: 173 ------------------NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI 214
Query: 375 LVNRGNTYKEIGRVTDAIQDYIRAITIR------PTMAEAHANLASAYKDSGHVEAAIKS 428
++ + + D+ + PT+ +L + Y+ G +EAA
Sbjct: 215 WMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTL 274
Query: 429 YKQALLLR 436
A R
Sbjct: 275 EDCASRNR 282
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 7e-35
Identities = 46/240 (19%), Positives = 85/240 (35%), Gaps = 40/240 (16%)
Query: 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELR--------PNFADAWSNLASAYMRKG 115
P A +A ++++ A A+ +R P A +NLA Y ++G
Sbjct: 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99
Query: 116 RLNEAAQCCRQALAL--------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ-- 165
+ EA C++AL + +P + +NL L + QG +E Y AL I
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159
Query: 166 ------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVK------LKPTFPD---AYLNLG 210
P A +NLA +++ G A YKE + D +++
Sbjct: 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAE 219
Query: 211 NVYKALGMPQEAIMCYQRAVQTR------PN-AIAFGNLASTYYERGQADMAILYYKQAI 263
++ +++ + + P +L + Y +G+ + A A
Sbjct: 220 EREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 8e-31
Identities = 52/259 (20%), Positives = 85/259 (32%), Gaps = 40/259 (15%)
Query: 15 YKQALEHSNSVYERNPLRTDNLL-LLGAIYYQLHDYDMCIARNEEALRLE--------PR 65
KQALE + +L +L +Y + Y +AL + P
Sbjct: 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA 83
Query: 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELR--------PNFADAWSNLASAYMRKGRL 117
A N+A + ++G A A+E+R P+ A +NLA +G+
Sbjct: 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143
Query: 118 NEAAQCCRQALAL--------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ---- 165
E R+AL + +P + +NL + QG Q+A + Y E L
Sbjct: 144 EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203
Query: 166 -----PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK------PTFPDAYLNLGNVYK 214
W + + Y + K PT +LG +Y+
Sbjct: 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYR 263
Query: 215 ALGMPQEAIMCYQRAVQTR 233
G + A A + R
Sbjct: 264 RQGKLEAAHTLEDCASRNR 282
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 3e-26
Identities = 45/198 (22%), Positives = 68/198 (34%), Gaps = 36/198 (18%)
Query: 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-----PSHP---QALTNLGNIYMEWNMLP 321
+ + ++ + + A+ Q L HP L L +Y + N
Sbjct: 1 MGSSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 60
Query: 322 AAASYYKATLAVT----------TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID--- 368
AA LA+ + NNLAV+Y ++G Y +A L I
Sbjct: 61 EAAHLLNDALAIREKTLGKDHPAVAAT--LNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118
Query: 369 -----PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR--------PTMAEAHANLASA 415
P A L N + G+ + Y RA+ I P +A+ NLAS
Sbjct: 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASC 178
Query: 416 YKDSGHVEAAIKSYKQAL 433
Y G + A YK+ L
Sbjct: 179 YLKQGKYQDAETLYKEIL 196
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 4e-39
Identities = 47/120 (39%), Positives = 70/120 (58%)
Query: 98 PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC 157
N A+AW NL +AY ++G +EA + ++AL L+P +A NLGN QG EA
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 158 YLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
Y +AL + P A AW NL + + GD + A++YY++A++L P +A NLGN + G
Sbjct: 66 YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 129 bits (328), Expect = 2e-35
Identities = 49/120 (40%), Positives = 68/120 (56%)
Query: 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123
AE + N+ NA+ ++GD D AI YY A+EL PN A+AW NL +AY ++G +EA +
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 124 CRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183
++AL L+P +A NLGN QG EA Y +AL + P A A NL + G
Sbjct: 66 YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 129 bits (328), Expect = 2e-35
Identities = 50/157 (31%), Positives = 70/157 (44%), Gaps = 34/157 (21%)
Query: 129 ALNPL-LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187
A++P +A NLGN QG EA Y +AL + P A AW NL + + GD +
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYY 247
A++YY++A++L P +A+ NLGN Y G EAI
Sbjct: 62 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY---------------------- 99
Query: 248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
Y++A+ DP EA NLGNA + G
Sbjct: 100 -----------YQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 3e-34
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 34/154 (22%)
Query: 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASY 326
EA+ NLGNA G DEAI+ Y + L L P++ +A
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-------------------- 45
Query: 327 YKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 386
+ NL Y +QG+Y +AI Y + L +DP A+ N GN Y + G
Sbjct: 46 --------------WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG 91
Query: 387 RVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
+AI+ Y +A+ + P AEA NL +A + G
Sbjct: 92 DYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 1e-32
Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 34/152 (22%)
Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
+A A+ NL + YY++G D AI YY++A+ DP EA+ NLGNA G DEAI+ Y
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
+ L L P++ +A + NL Y +QG+Y
Sbjct: 68 KALELDPNNAEA----------------------------------WYNLGNAYYKQGDY 93
Query: 355 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 386
+AI Y + L +DP A+ N GN ++ G
Sbjct: 94 DEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 120 bits (305), Expect = 2e-32
Identities = 50/111 (45%), Positives = 71/111 (63%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
LG YY+ DYD I ++AL L+P AE + N+ NA+ ++GD D AI YY A+EL P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG 149
N A+AW NL +AY ++G +EA + ++AL L+P +A NLGN + QG
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 4e-32
Identities = 43/111 (38%), Positives = 63/111 (56%)
Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
+ NL Y +QG+Y +AI Y + L +DP A+ N GN Y + G +AI+ Y +A+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
+ P AEA NL +AY G + AI+ Y++AL L P+ EA NL + Q
Sbjct: 72 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 88.2 bits (220), Expect = 6e-21
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412
N A+A + N GN Y + G +AI+ Y +A+ + P AEA NL
Sbjct: 7 NSAEA---WY--------------NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 49
Query: 413 ASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
+AY G + AI+ Y++AL L P+ EA NL +
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 2e-38
Identities = 50/358 (13%), Positives = 100/358 (27%), Gaps = 45/358 (12%)
Query: 111 YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI 170
+R+ + +A + + + +L + YLE +
Sbjct: 22 MIRQFSVPDAEILKAEVEQDIQQMEE-DQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPT 80
Query: 171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 230
L + L L+YY + G EAI Y+ A
Sbjct: 81 VTELLETIETPQKKLTGLLKYY------------SLFFRGMYEFDQKEYVEAIGYYREAE 128
Query: 231 QTRPN-------AIAFGNLASTYYERGQADMAILYYKQAI-------GCDPRFLEAYNNL 276
+ P A +A YY Q +++ + QA+ R +++ +
Sbjct: 129 KELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188
Query: 277 GNALKDVGRVDEAIQCYNQCLSLQPSHP------QALTNLGNIYMEWNMLPAAASYYKAT 330
D D+A+ L L +L N+ N Y A +++
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248
Query: 331 LAVTTGLSAPF-----NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLV-NRGNTYKE 384
V+ L+ + G A E L + +
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQA 308
Query: 385 IGRVTDAIQDYIRAITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
+ + T + ++ + + A+ ++ S H E A Y++ L +
Sbjct: 309 VYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 2e-33
Identities = 44/348 (12%), Positives = 95/348 (27%), Gaps = 55/348 (15%)
Query: 7 HQMYKSGSYKQALEHSNSV------YERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
++M + S A V E + L+ + + DY
Sbjct: 20 YKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRP 79
Query: 61 RLE-------------PRFAECYG--NMANAWKEKGDIDLAIRYYLVAIEL------RPN 99
+ + Y ++ + AI YY A +
Sbjct: 80 TVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE 139
Query: 100 FADAWSNLASAYMRKGRLNEAAQCCRQALAL-------NPLLVDAHSNLGNLMKAQGLVQ 152
A+ +A AY + + + QAL + + + + +
Sbjct: 140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYD 199
Query: 153 EAYSCYLEALRI------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK-----PT 201
+A AL + AI+ N+A + SGD A++++++A K+
Sbjct: 200 KALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259
Query: 202 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---------AIAFGNLASTYYERGQA 252
P L G Q+A + + + + + +
Sbjct: 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319
Query: 253 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
+ Y+++ + + ++A Y + L Q
Sbjct: 320 HDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 7/100 (7%)
Query: 5 LAHQMYKSGSYKQALEHSN-----SVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNE-- 57
L+ + K+G ++A + + + L L A+Y + D
Sbjct: 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326
Query: 58 EALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELR 97
E L C + A ++ + A +Y ++ +
Sbjct: 327 EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 1e-35
Identities = 53/361 (14%), Positives = 120/361 (33%), Gaps = 48/361 (13%)
Query: 111 YMRKGRLNEAAQCCRQALALNPLLVDAHSNLG--NLMKAQGLVQEAYSCYLEALRIQPTF 168
Y+R+ + +A R+ + + +LM+ + + Y LE +RI+
Sbjct: 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQP 81
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
++ L + + L L+YY G AI +++
Sbjct: 82 RLS-DLLLEIDKKQARLTGLLEYY------------FNFFRGMYELDQREYLSAIKFFKK 128
Query: 229 AVQTRPN-------AIAFGNLASTYYERGQADMAILYYKQAI-------GCDPRFLEAYN 274
A A F ++ +YY Q ++ Y +QA + R L+ ++
Sbjct: 129 AESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188
Query: 275 NLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAASYYK 328
D+ + ++AI + + S+ + L N+G + A Y+K
Sbjct: 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248
Query: 329 ATLAVT------TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI-----DPLAADGLVN 377
+AV L + + I+ + G A +++ + D +
Sbjct: 249 RAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF 308
Query: 378 RGNTYKEIG--RVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL 435
+ Y D++ + + + + ++A Y + + + A + + +
Sbjct: 309 LKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
Query: 436 R 436
R
Sbjct: 369 R 369
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 3e-33
Identities = 45/395 (11%), Positives = 116/395 (29%), Gaps = 80/395 (20%)
Query: 7 HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF 66
+ + S A + + ++ L +YY L ++ R
Sbjct: 20 YMYIRRFSIPDAEYLRREIKQELDQMEEDQDLH--LYYSLMEF---------------RH 62
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
+ K + + + L+ I+ + L Y
Sbjct: 63 NLMLEYLEPLEKMRIEEQPRLSDLLLEID---KKQARLTGLLEYY--------------- 104
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF------AIAWSNLAGLFM 180
+ G Q A + +A A + ++ +
Sbjct: 105 ----------FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY 154
Query: 181 ESGDLNRALQYYKEAVKLKPTFPD-------AYLNLGNVYKALGMPQEAIMCYQRAVQTR 233
++ Y ++A ++ + + L ++AI +Q+A
Sbjct: 155 YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA 214
Query: 234 PN-------AIAFGNLASTYYERGQADMAILYYKQA------IGCDPRFLEAYNNLGNAL 280
N+ + Q + AI Y+K+A P +AY +
Sbjct: 215 EAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH 274
Query: 281 KDVGRVDEAIQCYNQCLSL-----QPSHPQALTNLGNIYMEWN---MLPAAASYYKATLA 332
+G++D+A + +++ ++ + L ++Y+ + + ++ +
Sbjct: 275 YKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML 334
Query: 333 VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
L ++A Y ++ N+ A + + +V ++
Sbjct: 335 -YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 2e-29
Identities = 32/246 (13%), Positives = 80/246 (32%), Gaps = 29/246 (11%)
Query: 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL-------EPRFA 67
+K+A V +R + + + YY + + +A + R
Sbjct: 126 FKKAESKLIFVKDR-IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184
Query: 68 ECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFADAWSNLASAYMRKGRLNEAA 121
+C+ A + + + AI ++ A + N+ + + +A
Sbjct: 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI 244
Query: 122 QCCRQALALN------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-----QPTFAI 170
++A+A+ P L A+ + + G + +A+ + + + +
Sbjct: 245 PYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304
Query: 171 AWSNLAGLFMESGD---LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ 227
+ L L++ D + + + L D +++ Y Q+A +
Sbjct: 305 EFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFL 363
Query: 228 RAVQTR 233
+ Q R
Sbjct: 364 KVEQVR 369
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Query: 5 LAHQMYKSGSYKQALEHSN-----SVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNE-- 57
+ YK G +A E+ + S + + L ++Y D + +
Sbjct: 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL 329
Query: 58 EALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELR 97
E+ L + ++A + E+ + A Y+L ++R
Sbjct: 330 ESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 3e-30
Identities = 48/252 (19%), Positives = 83/252 (32%), Gaps = 14/252 (5%)
Query: 91 LVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGN-LMKAQG 149
+V I F D + + R R A + R A+ LN L Q
Sbjct: 87 VVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK 146
Query: 150 LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNL 209
+ E + + QP W + L D ++ L++ + + A+ +
Sbjct: 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 206
Query: 210 GNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLAST------YYERGQADMAILYYKQA 262
V + + + + ++ N + Y +R + + Y +
Sbjct: 207 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 266
Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ--ALTNLGNIY---MEW 317
I P A+N L L+D G + + NQ L LQPSH + L +IY +E
Sbjct: 267 IKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLEN 325
Query: 318 NMLPAAASYYKA 329
KA
Sbjct: 326 QCDNKEDILNKA 337
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 2e-25
Identities = 32/247 (12%), Positives = 71/247 (28%), Gaps = 13/247 (5%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKE-KGDIDLAIRYYLVAIELR 97
A+ + + +A+ L + K + D+ + Y IE +
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162
Query: 98 PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC 157
P W + ++ + L + A + +++ L
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 222
Query: 158 YLEALRIQPTFAIAWSNLAGLFMESGD------LNRALQYYKEAVKLKPTFPDAYLNLGN 211
+ L+ W+ + + L R +QY E +KL P A+ L
Sbjct: 223 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG 282
Query: 212 VYKALGMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYE--RGQADMAILYYKQAIGCD 266
+ + G+ + + + +P+ L Y + Q D +A+
Sbjct: 283 ILQDRGL-SKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELC 341
Query: 267 PRFLEAY 273
+
Sbjct: 342 EILAKEK 348
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 97.5 bits (242), Expect = 1e-21
Identities = 28/314 (8%), Positives = 81/314 (25%), Gaps = 67/314 (21%)
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG-DL 185
+ + D + +++ + A+ +A+ + W L DL
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAST 245
+ + Y ++ +P + + + + L P + +
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI---------------- 192
Query: 246 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 305
+ D + A+ + +++ D +Q +Q L +
Sbjct: 193 -----------------LNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS 235
Query: 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVL 365
+ Y + + E++
Sbjct: 236 VWNQRYFVISNTT----------------------------GYNDRAVLEREVQYTLEMI 267
Query: 366 RIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN--LASAYKDSGH-- 421
++ P ++ G ++ + + ++P+ + + L Y+D
Sbjct: 268 KLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQ 326
Query: 422 VEAAIKSYKQALLL 435
+ +AL L
Sbjct: 327 CDNKEDILNKALEL 340
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 90.5 bits (224), Expect = 2e-19
Identities = 22/188 (11%), Positives = 55/188 (29%), Gaps = 7/188 (3%)
Query: 262 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM-L 320
I +F + Y+ L+ R + A + + L ++ + L
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 321 PAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN 380
+Y A + +++ V+ + + + + ++L D +R
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208
Query: 381 TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA------YKDSGHVEAAIKSYKQALL 434
+E + +Q + + Y D +E ++ + +
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268
Query: 435 LRPDFPEA 442
L P A
Sbjct: 269 LVPHNESA 276
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 4e-28
Identities = 29/230 (12%), Positives = 69/230 (30%), Gaps = 50/230 (21%)
Query: 14 SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNM 73
S +A+ N G + D+ + + ++ + N+
Sbjct: 2 SLVEAISLWN---------------EGVLAADKKDWKGAL---DAFSAVQDPHSRICFNI 43
Query: 74 ANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA-LNP 132
+ ++ A + + +I + A A+ Y + + + A + ++AL L
Sbjct: 44 GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103
Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
+ + LG K N+A ++ + + +A +
Sbjct: 104 NQLIDYKILGLQFKLFA-------------------CEVLYNIAFMYAKKEEWKKAEEQL 144
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL 242
A +K + ++ +A+ C + P I G L
Sbjct: 145 ALATSMKSEPRHSKID------------KAMECVWKQKLYEPVVIPVGRL 182
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-27
Identities = 23/174 (13%), Positives = 49/174 (28%), Gaps = 22/174 (12%)
Query: 137 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAV 196
+ N G L + + A + +Q + N+ ++ ++ A + + ++
Sbjct: 8 SLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSI 64
Query: 197 KLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV-QTRPNAIAFGNLASTYYERGQADMA 255
AY G +Y AI + A+ Q R N
Sbjct: 65 NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ------------------L 106
Query: 256 ILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN 309
I Y + E N+ +A + S++ + +
Sbjct: 107 IDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID 160
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 5e-27
Identities = 28/181 (15%), Positives = 53/181 (29%), Gaps = 31/181 (17%)
Query: 259 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 318
+AI + N G D A+ ++ +Q H + N+G +Y
Sbjct: 3 LVEAI--------SLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILK 51
Query: 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR-IDPLAADGLVN 377
+ A + ++ L+ + ++Y Q Y AI E L +
Sbjct: 52 NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 111
Query: 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437
G +K E N+A Y + A + A ++
Sbjct: 112 LGLQFKLFA-------------------CEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152
Query: 438 D 438
+
Sbjct: 153 E 153
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 5e-26
Identities = 30/203 (14%), Positives = 59/203 (29%), Gaps = 33/203 (16%)
Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
AI+ N ++ A+ + N+G + + EA + +
Sbjct: 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFT 61
Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
+ ++ A G +Y + A K L G N + YK G
Sbjct: 62 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG------NQLIDYKILG-- 113
Query: 355 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414
L+ A + L N Y + A + A +++ H+ +
Sbjct: 114 ----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE--PRHSKI-- 159
Query: 415 AYKDSGHVEAAIKSYKQALLLRP 437
+ A++ + L P
Sbjct: 160 --------DKAMECVWKQKLYEP 174
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 7e-22
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
N V+ + ++ A+ ++ + + N G Y + +T+A + + R+I
Sbjct: 9 LWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 65
Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL-LLRPDFPEATCNL 446
+A A+ Y + + AIK K+AL LR + L
Sbjct: 66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKIL 112
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 5e-28
Identities = 32/198 (16%), Positives = 57/198 (28%), Gaps = 32/198 (16%)
Query: 86 AIRYYLVAIEL------RPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL------NPL 133
A Y L + + A L Y R +EA + +
Sbjct: 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA 64
Query: 134 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-------QPTFAIAWSNLAGLFMESGDLN 186
A +G + + G A C+LE + + +A + + GDL
Sbjct: 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLA 124
Query: 187 RALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCYQRAVQ-------TR 233
A Q Y++++ D A+ LG++ + EA + RA +
Sbjct: 125 GARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSE 184
Query: 234 PNAIAFGNLASTYYERGQ 251
L +
Sbjct: 185 AVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 1e-26
Identities = 33/204 (16%), Positives = 55/204 (26%), Gaps = 31/204 (15%)
Query: 243 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL--- 299
A Y A + + A LG + R DEA +
Sbjct: 5 AHDYAL------AERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQK 58
Query: 300 ---QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV-------TTGLSAPFNNLAVIYK 349
+ +AL +G + AA + + SA +A +
Sbjct: 59 SGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL 118
Query: 350 QQGNYADAISCYNEVLRID------PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI-- 401
G+ A A Y + L A G+ ++ + +A Q ++RA I
Sbjct: 119 HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178
Query: 402 ----RPTMAEAHANLASAYKDSGH 421
+ E L H
Sbjct: 179 ELEDSEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-26
Identities = 29/199 (14%), Positives = 53/199 (26%), Gaps = 32/199 (16%)
Query: 188 ALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCYQRAVQT------RPN 235
A Y + + A LG VY + EA +Q Q
Sbjct: 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA 64
Query: 236 -AIAFGNLASTYYERGQADMAILYYKQA------IGCDPRFL-EAYNNLGNALKDVGRVD 287
A + G D A + + + DP + G +
Sbjct: 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLA 124
Query: 288 EAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV------TT 335
A Q Y + L Q + A LG++ + L A ++ + +
Sbjct: 125 GARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSE 184
Query: 336 GLSAPFNNLAVIYKQQGNY 354
++ L + ++
Sbjct: 185 AVNELMTRLNGLEHHHHHH 203
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 7e-26
Identities = 27/200 (13%), Positives = 54/200 (27%), Gaps = 25/200 (12%)
Query: 43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL------ 96
++ HDY + + + L + + + D A + +
Sbjct: 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD 61
Query: 97 RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVD-------AHSNLGNLMKAQG 149
A + G + A +C + L L + + + G
Sbjct: 62 HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG 121
Query: 150 LVQEAYSCYLEALRI------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP 203
+ A Y ++L Q A A+ L L + +L A Q++ A +
Sbjct: 122 DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181
Query: 204 D------AYLNLGNVYKALG 217
D L +
Sbjct: 182 DSEAVNELMTRLNGLEHHHH 201
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 3e-25
Identities = 29/225 (12%), Positives = 62/225 (27%), Gaps = 52/225 (23%)
Query: 119 EAAQCCRQALALNPLLVD------AHSNLGNLMKAQGLVQEAYSCYLEALRI------QP 166
EA LL A LG + EA + + +
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD-------AYLNLGNVYKALGMP 219
A + + +G+ + A + + E +L + P+ + V G
Sbjct: 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123
Query: 220 QEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 279
A Y++++ A + + A A+ LG+
Sbjct: 124 AGARQEYEKSLVY---AQQADD------QVAIAC------------------AFRGLGDL 156
Query: 280 LKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWN 318
+ + EA Q + + + + + +T L + +
Sbjct: 157 AQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHH 201
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 8e-24
Identities = 30/195 (15%), Positives = 56/195 (28%), Gaps = 26/195 (13%)
Query: 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL------EPRFAE 68
+ + + +LG +Y + +D A + +
Sbjct: 9 ALAERQAQALLAHP-ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHR 67
Query: 69 CYGNMANAWKEKGDIDLAIRYYLVAIEL-------RPNFADAWSNLASAYMRKGRLNEAA 121
+ + G+ D A R +L EL + +A+ + G L A
Sbjct: 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGAR 127
Query: 122 QCCRQALAL------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI------QPTFA 169
Q ++L + A LG+L + + + EA +L A I
Sbjct: 128 QEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVN 187
Query: 170 IAWSNLAGLFMESGD 184
+ L GL
Sbjct: 188 ELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 1e-15
Identities = 23/170 (13%), Positives = 49/170 (28%), Gaps = 25/170 (14%)
Query: 5 LAHQMYKSGSYKQALEHSN---SVYERNPLRTD---NLLLLGAIYYQLHDYDMCIARNEE 58
L + + +A +++ T L +G + ++D E
Sbjct: 32 LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLE 91
Query: 59 ALRLEPRF-------AECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFADAWS 105
L + +A GD+ A + Y ++ + A A+
Sbjct: 92 ERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFR 151
Query: 106 NLASAYMRKGRLNEAAQCCRQALAL------NPLLVDAHSNLGNLMKAQG 149
L ++ L EA Q +A + + + + + L L
Sbjct: 152 GLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHH 201
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 40/291 (13%), Positives = 86/291 (29%), Gaps = 60/291 (20%)
Query: 180 MESGDLNRALQYYKEAVKL--------KPTFPDA---YLNLGNVYKALGMPQEAIMCYQR 228
+ + ++ A ++ +A K KP + A Y +K ++A Y +
Sbjct: 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQ 61
Query: 229 AVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE 288
+ N + + A +A+ G LKD+ R+ E
Sbjct: 62 EAEAHANNRSLFHAA---------------------------KAFEQAGMMLKDLQRMPE 94
Query: 289 AIQCYNQCLSLQPSHPQ------ALTNLGNIYMEWNMLPAAASYYKATLAV-----TTGL 337
A+Q + + + AL G + ++ A Y +A
Sbjct: 95 AVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQA 154
Query: 338 SAPFNNLAVIYKQQGNYADAISCYNEVLRID------PLAADGLVNRGNTYKEIGRVTDA 391
+ + + +Q + +A + + + P + + A
Sbjct: 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214
Query: 392 IQDYIRAITI----RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
+ + +I A +L AY D E ++ + L+ D
Sbjct: 215 QKCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCRSPLVTYMD 264
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 43/275 (15%), Positives = 72/275 (26%), Gaps = 69/275 (25%)
Query: 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 171
+ +++EA + +A + + MK + A S Y
Sbjct: 2 IAAQKISEAHEHIAKA--------EKYLKTS-FMKWKPDYDSAASEY------------- 39
Query: 172 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMC 225
+ A F + L +A Y + + A+ G + K L EA+
Sbjct: 40 -AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98
Query: 226 YQRAVQ------TRPNAIAFGNLASTYYERGQADMAILYYKQAIGC-----DPRFL-EAY 273
++A T A + A E A+ Y+QA R E
Sbjct: 99 IEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELI 158
Query: 274 NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 333
L + DEA + S +Y E P
Sbjct: 159 GKASRLLVRQQKFDEAAASLQKEKS--------------MYKEMENYPTCYKKC------ 198
Query: 334 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 368
++ + +Y A C E I
Sbjct: 199 --------IAQVLVQLHRADYVAAQKCVRESYSIP 225
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 99.2 bits (247), Expect = 7e-23
Identities = 39/250 (15%), Positives = 65/250 (26%), Gaps = 54/250 (21%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
A Y A A+K ++ A YL E N + AA+
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLF--------------HAAKA--- 78
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-----QPTFAIAWSNLAGLFME 181
G ++K + EA +A + P A + AG ME
Sbjct: 79 -----------FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME 127
Query: 182 SGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCYQRAV----- 230
DL++A+ Y++A + + EA Q+
Sbjct: 128 PLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187
Query: 231 --QTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE-----AYNNLGNALK-- 281
R A +++ P F A +L A
Sbjct: 188 MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI-PGFSGSEDCAALEDLLQAYDEQ 246
Query: 282 DVGRVDEAIQ 291
D ++ +
Sbjct: 247 DEEQLLRVCR 256
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 4e-17
Identities = 24/211 (11%), Positives = 49/211 (23%), Gaps = 47/211 (22%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRF------AECYGNMANAWKEKGDIDLAIRYYLV 92
+ + + A+ + K+ + A++Y
Sbjct: 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEK 101
Query: 93 AIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ 152
A + Y+ G + AA G LM+ L
Sbjct: 102 ASVM--------------YVENGTPDTAAMA--------------LDRAGKLMEPLDL-S 132
Query: 153 EAYSCYLEALRIQPTF------AIAWSNLAGLFMESGDLNRALQYYKEAVKL------KP 200
+A Y +A + A + L + + A ++ + P
Sbjct: 133 KAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192
Query: 201 TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 231
T + V A C + +
Sbjct: 193 TCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 9e-13
Identities = 32/215 (14%), Positives = 64/215 (29%), Gaps = 31/215 (14%)
Query: 9 MYKS-GSYKQALE---HSNSVYERNPLRTD---NLLLLGAIYYQLHDYDMCIARNEEALR 61
+K+ +QA + + N G + L + E+A
Sbjct: 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASV 104
Query: 62 L-----EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFADAWSNLASA 110
+ P A + A E D+ A+ Y A + A+ +
Sbjct: 105 MYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRL 164
Query: 111 YMRKGRLNEAAQCCRQALALN------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164
+R+ + +EAA ++ ++ P + + A C E+ I
Sbjct: 165 LVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224
Query: 165 QPTF-----AIAWSNLAGLFMESGDLNRALQYYKE 194
P F A +L + + D + L+ +
Sbjct: 225 -PGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCRS 257
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 14/121 (11%), Positives = 34/121 (28%), Gaps = 18/121 (14%)
Query: 8 QMYKSGSYKQALEH------SNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
++ + +A+ ER + + + + +D A ++
Sbjct: 124 KLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183
Query: 62 L------EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD-----AWSNLASA 110
+ P + + D A + + + P F+ A +L A
Sbjct: 184 MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI-PGFSGSEDCAALEDLLQA 242
Query: 111 Y 111
Y
Sbjct: 243 Y 243
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-27
Identities = 17/140 (12%), Positives = 41/140 (29%), Gaps = 31/140 (22%)
Query: 164 IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 223
+ + L ++G+ ++ +++A++L P +L G L +EA+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 224 MCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV 283
CY + D + + +AL+ +
Sbjct: 61 DCYNYVINVIE-------------------------------DEYNKDVWAAKADALRYI 89
Query: 284 GRVDEAIQCYNQCLSLQPSH 303
+ + L+ H
Sbjct: 90 EGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 97.5 bits (244), Expect = 3e-24
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 2/100 (2%)
Query: 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401
V+ GNY ++I + + +++DP + + +G + R +A+ Y I +
Sbjct: 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV 69
Query: 402 RP--TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
+ A A A + E + + L
Sbjct: 70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 97.1 bits (243), Expect = 4e-24
Identities = 19/140 (13%), Positives = 34/140 (24%), Gaps = 36/140 (25%)
Query: 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 325
+ E Y G D G E+I + + + L P + G
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN--------- 52
Query: 326 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI--DPLAADGLVNRGNTYK 383
Y +A+ CYN V+ + D D + + +
Sbjct: 53 -------------------------LERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87
Query: 384 EIGRVTDAIQDYIRAITIRP 403
I + +
Sbjct: 88 YIEGKEVEAEIAEARAKLEH 107
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 94.4 bits (236), Expect = 3e-23
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 2/108 (1%)
Query: 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123
+ E Y + G+ +I + AI+L P + W A R EA C
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62
Query: 124 CRQALALNP--LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 169
+ + D + + ++ + +++
Sbjct: 63 YNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 93.3 bits (233), Expect = 7e-23
Identities = 14/107 (13%), Positives = 28/107 (26%), Gaps = 2/107 (1%)
Query: 98 PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC 157
+ + G E+ +A+ L+P G + +EA C
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62
Query: 158 YLEALRIQP--TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202
Y + + W+ A + + KL+
Sbjct: 63 YNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 92.9 bits (232), Expect = 1e-22
Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 32/135 (23%)
Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
N + Y+ G +I +++AI DP + + G AL ++ R +EA+ CYN
Sbjct: 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYN 64
Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
+++ + A +
Sbjct: 65 YVINVIED------------------EYNKDVW--------------AAKADALRYIEGK 92
Query: 355 ADAISCYNEVLRIDP 369
+++
Sbjct: 93 EVEAEIAEARAKLEH 107
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 92.5 bits (231), Expect = 2e-22
Identities = 10/108 (9%), Positives = 31/108 (28%), Gaps = 2/108 (1%)
Query: 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
+ + + G L G E+ + +A+++ P + W A+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 190 QYYKEAVKLKP--TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
Y + + D + + + + + + + +
Sbjct: 61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 2e-18
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 2/96 (2%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
G + Y +Y I E+A++L+P ++ + A + A+ Y I +
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71
Query: 99 NF--ADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
+ D W+ A A A+ L
Sbjct: 72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 71.3 bits (176), Expect = 3e-15
Identities = 12/76 (15%), Positives = 26/76 (34%)
Query: 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 426
+ + G + G T++I + +AI + P ++ A + E A+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 427 KSYKQALLLRPDFPEA 442
Y + + D
Sbjct: 61 DCYNYVINVIEDEYNK 76
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 5e-07
Identities = 12/94 (12%), Positives = 34/94 (36%), Gaps = 2/94 (2%)
Query: 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP--RFA 67
Y +G+Y ++++ + +P + L+ G Y L Y+ + + +
Sbjct: 17 YDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK 76
Query: 68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA 101
+ + A+A + ++ +L +
Sbjct: 77 DVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 6e-05
Identities = 7/46 (15%), Positives = 18/46 (39%)
Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
+ E + D+G+ +I +++A+ L P+ +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMK 46
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 4e-27
Identities = 38/86 (44%), Positives = 55/86 (63%)
Query: 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123
AE + N+ NA+ ++GD D AI YY A+EL PN A+AW NL +AY ++G +EA +
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 124 CRQALALNPLLVDAHSNLGNLMKAQG 149
++AL L+P +A NLGN + QG
Sbjct: 66 YQKALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 9e-27
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 198 LKPT-FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMA 255
+ P +A+ NLGN Y G EAI YQ+A++ PN A A+ NL + YY++G D A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 256 ILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
I YY++A+ DP EA NLGNA + G
Sbjct: 63 IEYYQKALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-26
Identities = 36/81 (44%), Positives = 50/81 (61%)
Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
A A+ NL + YY++G D AI YY++A+ DP EA+ NLGNA G DEAI+ Y +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 296 CLSLQPSHPQALTNLGNIYME 316
L L P++ +A NLGN +
Sbjct: 69 ALELDPNNAEAKQNLGNAKQK 89
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-25
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 129 ALNPL-LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187
A++P +A NLGN QG EA Y +AL + P A AW NL + + GD +
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
A++YY++A++L P +A NLGN + G
Sbjct: 62 AIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 95.5 bits (239), Expect = 6e-24
Identities = 33/86 (38%), Positives = 46/86 (53%)
Query: 98 PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC 157
N A+AW NL +AY ++G +EA + ++AL L+P +A NLGN QG EA
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 158 YLEALRIQPTFAIAWSNLAGLFMESG 183
Y +AL + P A A NL + G
Sbjct: 66 YQKALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 92.5 bits (231), Expect = 7e-23
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASY 326
EA+ NLGNA G DEAI+ Y + L L P++ +A
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-------------------- 45
Query: 327 YKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 386
+ NL Y +QG+Y +AI Y + L +DP A+ N GN ++ G
Sbjct: 46 --------------WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 90.1 bits (225), Expect = 6e-22
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412
N A+A + N GN Y + G +AI+ Y +A+ + P AEA NL
Sbjct: 7 NSAEA---WY--------------NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 49
Query: 413 ASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
+AY G + AI+ Y++AL L P+ EA NL + Q
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 78.2 bits (194), Expect = 7e-18
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
LG YY+ DYD I ++AL L+P AE + N+ NA+ ++GD D AI YY A+EL P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 99 NFADAWSNLASAYMRKG 115
N A+A NL +A ++G
Sbjct: 75 NNAEAKQNLGNAKQKQG 91
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 3e-25
Identities = 33/177 (18%), Positives = 65/177 (36%), Gaps = 41/177 (23%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQ-------TRPNAIAFGNLASTYYERGQADMAI 256
A+ NLGN + LG ++A++ +++ + IA+ NL + Y G+ + A
Sbjct: 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS 69
Query: 257 LYYKQA------IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310
YYK+ + ++ +LGN + ++AI + + L++ Q L +
Sbjct: 70 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA----QELKDR 125
Query: 311 GNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
+ +L Y GN+ A+ + L I
Sbjct: 126 IGE---------GRAC---------------WSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-24
Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 40/177 (22%)
Query: 272 AYNNLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAAS 325
A+ NLGN +G +A+ + Q L + + + A +NLGN Y+ A+
Sbjct: 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASE 70
Query: 326 YYKATLAVT------TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379
YYK TL + + +L Y +Y AI + + L I
Sbjct: 71 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI------------ 118
Query: 380 NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
+E+ R A +L +AY G+ + A+ ++ L +
Sbjct: 119 --AQELKD--------------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 1e-23
Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 18/153 (11%)
Query: 97 RPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL------NPLLVDAHSNLGNLMKAQGL 150
R A+ NL + + G +A Q L + A+SNLGN G
Sbjct: 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE 64
Query: 151 VQEAYSCYLEALRI------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 204
+ A Y + L + + A + +L + D +A+ Y+ + + + D
Sbjct: 65 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124
Query: 205 ------AYLNLGNVYKALGMPQEAIMCYQRAVQ 231
A +LGN Y ALG +A+ ++ ++
Sbjct: 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 4e-23
Identities = 26/151 (17%), Positives = 60/151 (39%), Gaps = 18/151 (11%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFADAWSNLASAYMRKGRLNEA 120
+GN+ N G+ A+ + + + + A+SNL +AY+ G A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 121 AQCCRQALALN------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ------PTF 168
++ ++ L L + + +LGN ++A +L+ L I
Sbjct: 69 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLK 199
A +L + G+ ++A+ + ++ +++
Sbjct: 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-21
Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 18/144 (12%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRL------EPRFAECYGNMANAWKEKGDIDLAIRYYLV 92
LG +Y L ++ + +E+ L + + Y N+ NA+ G+ + A YY
Sbjct: 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74
Query: 93 AIEL------RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN------PLLVDAHSN 140
+ L R A + +L + Y +A + LA+ A +
Sbjct: 75 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 134
Query: 141 LGNLMKAQGLVQEAYSCYLEALRI 164
LGN A G +A + L I
Sbjct: 135 LGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-08
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL------EPRFAE 68
YK+ L + + +R + + LG Y L DY+ I + + L +
Sbjct: 72 YKKTLLLARQLKDR-AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130
Query: 69 CYGNMANAWKEKGDIDLAIRYYLVAIELR 97
++ NA+ G+ D A+ + +E+
Sbjct: 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITI------RPTMAEAHANLASAYKDSGHVEAA 425
N GNT+ +G DA+ + + + I + A++NL +AY G E A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 426 IKSYKQALLLR 436
+ YK+ LLL
Sbjct: 69 SEYYKKTLLLA 79
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 3e-25
Identities = 20/135 (14%), Positives = 40/135 (29%), Gaps = 4/135 (2%)
Query: 158 YLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
+ L ++G + A + ++ L +L LG ++LG
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 218 MPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAI---GCDPRFLEAY 273
+ ++A+ Y + A + + G D A + A P
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126
Query: 274 NNLGNALKDVGRVDE 288
G L+ V +
Sbjct: 127 ARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 9e-25
Identities = 20/124 (16%), Positives = 39/124 (31%)
Query: 93 AIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ 152
L + + L + G+ ++A + + L+ LG ++ GL +
Sbjct: 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYE 69
Query: 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 212
+A Y + + A ++ GDL+ A + A L P
Sbjct: 70 QALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129
Query: 213 YKAL 216
L
Sbjct: 130 GAML 133
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 99.4 bits (248), Expect = 1e-24
Identities = 20/120 (16%), Positives = 33/120 (27%)
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
L+ ++ LG G +A + + A + L G
Sbjct: 8 AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL 67
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAS 244
+ALQ Y + P + + LG A + A A LA+
Sbjct: 68 YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 3e-23
Identities = 19/137 (13%), Positives = 36/137 (26%), Gaps = 4/137 (2%)
Query: 58 EALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRL 117
L E + + G D A + + L A + L + G
Sbjct: 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY 68
Query: 118 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAG 177
+A Q ++ + G + A S + A +
Sbjct: 69 EQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ----PAHEA 124
Query: 178 LFMESGDLNRALQYYKE 194
L +G + A+ K+
Sbjct: 125 LAARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 2e-22
Identities = 18/111 (16%), Positives = 30/111 (27%)
Query: 259 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 318
G LE LG G+ D+A + + L + LG
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 369
+ A Y + + A + Q G+ A S + +
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 5e-22
Identities = 18/101 (17%), Positives = 32/101 (31%)
Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
L Q G + DA + + +D A + G + +G A+Q Y
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441
+ + A + G ++ A + A L P
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 1e-21
Identities = 21/139 (15%), Positives = 48/139 (34%), Gaps = 5/139 (3%)
Query: 226 YQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
L Y+ G+ D A ++ D + LG + +G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 285 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 344
++A+Q Y+ + + P+ + +++ L A S + + A L+A
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA----LAAAQPAH 122
Query: 345 AVIYKQQGNYADAISCYNE 363
+ + G +A++ +
Sbjct: 123 EALAARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 2e-19
Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 10/144 (6%)
Query: 13 GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
G+ + + L LG YQ +D + L+ A +
Sbjct: 5 GTLAMLRG-------LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLG 57
Query: 73 MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL-- 130
+ + G + A++ Y + N + A +++ G L+ A A AL
Sbjct: 58 LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117
Query: 131 -NPLLVDAHSNLGNLMKAQGLVQE 153
P + G +++A ++
Sbjct: 118 AQPAHEALAARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 1e-15
Identities = 14/86 (16%), Positives = 29/86 (33%)
Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
+ + + L G + G+ DA + + + A L + + G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 421 HVEAAIKSYKQALLLRPDFPEATCNL 446
E A++SY L+ + P +
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHA 92
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 5e-14
Identities = 20/116 (17%), Positives = 37/116 (31%)
Query: 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE 63
AL Y++G + A + ++ + L LGA L Y+ + ++
Sbjct: 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82
Query: 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNE 119
+ A + GD+D A + A L + A A +
Sbjct: 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTA 138
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 11/82 (13%), Positives = 20/82 (24%), Gaps = 13/82 (15%)
Query: 377 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
+ G T + E L +G + A K ++ +L
Sbjct: 2 SDGGTLAM-------------LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD 48
Query: 437 PDFPEATCNLLHTLQCVCSWED 458
L Q + +E
Sbjct: 49 HYDARYFLGLGACRQSLGLYEQ 70
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 5e-25
Identities = 40/305 (13%), Positives = 73/305 (23%), Gaps = 47/305 (15%)
Query: 6 AHQMYKSGSYKQALEHSNSVYERNP-LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
+ GSY+Q + + V +P + + L Y Y + + + + E
Sbjct: 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPE- 64
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYY--LVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
+ A D + ++ + AS Y + A +
Sbjct: 65 --LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR 122
Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA--GLFM 180
Q +L + ++ + A + + A L
Sbjct: 123 TLHQGDSLE-----CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAA 177
Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFG 240
L A ++E + A G + A Q A+
Sbjct: 178 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD--------- 228
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL-SL 299
D E NL + +G+ E Y L
Sbjct: 229 ------------------------KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264
Query: 300 QPSHP 304
SHP
Sbjct: 265 HRSHP 269
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 99.0 bits (246), Expect = 6e-23
Identities = 32/236 (13%), Positives = 68/236 (28%), Gaps = 13/236 (5%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR--L 62
L Y L+ + + + + D +A + + +
Sbjct: 40 LYRAYLAQRKYGVVLDE---IKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSV 96
Query: 63 EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
+ A+ + + D A+R L + ++ RL+ A +
Sbjct: 97 DVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE-----CMAMTVQILLKLDRLDLARK 151
Query: 123 CCRQALALNPLLVDAHSNLG--NLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
++ + +L +Q+AY + E + + A M
Sbjct: 152 ELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM 211
Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY-QRAVQTRPN 235
G A +EA+ P+ +NL + + LG P E Y + +
Sbjct: 212 AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 97.5 bits (242), Expect = 2e-22
Identities = 36/264 (13%), Positives = 65/264 (24%), Gaps = 13/264 (4%)
Query: 183 GDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN 241
G + + + P + + L Y A + + + + P A
Sbjct: 13 GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRM 70
Query: 242 LASTYYERGQADMAILYYKQ--AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
A + D + + + D + D A++ +Q SL
Sbjct: 71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSL 130
Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG--NYADA 357
+ I ++ + L A K + A + G DA
Sbjct: 131 ECMA-----MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDA 185
Query: 358 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417
+ E+ L + + GR A A+ E NL +
Sbjct: 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245
Query: 418 DSGHVEAAIKSYKQALL-LRPDFP 440
G Y L P
Sbjct: 246 HLGKPPEVTNRYLSQLKDAHRSHP 269
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 89.8 bits (222), Expect = 1e-19
Identities = 40/254 (15%), Positives = 75/254 (29%), Gaps = 15/254 (5%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQ 261
D ++ N + +G Q+ I QR + P L Y + + + + K
Sbjct: 1 DELFDVKNAF-YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP 59
Query: 262 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL--SLQPSHPQALTNLGNIYMEWNM 319
+ L+A L R D + ++ + S+ ++ L +IY
Sbjct: 60 S---SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN 116
Query: 320 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379
AA ++ I + A ++ D A +
Sbjct: 117 PDAALRTLHQGDSLE-----CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATA 171
Query: 380 --NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437
+ ++ DA + A+ + G EAA ++AL
Sbjct: 172 WVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231
Query: 438 DFPEATCNLLHTLQ 451
PE NL+ Q
Sbjct: 232 GHPETLINLVVLSQ 245
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 4e-05
Identities = 12/100 (12%), Positives = 26/100 (26%), Gaps = 1/100 (1%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
+ A + A + ++ L A + ++ +EAL
Sbjct: 168 LATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227
Query: 61 RLEPRFAECYGNMANAWKEKGDIDLAIRYYL-VAIELRPN 99
+ E N+ + G YL + +
Sbjct: 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 6e-24
Identities = 49/340 (14%), Positives = 86/340 (25%), Gaps = 70/340 (20%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAW-----SNLASAYMRKGRLNEAA 121
AE A G+ D A R +A+E P S L KG L +
Sbjct: 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL 73
Query: 122 QCCRQALALN------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ--------PT 167
+Q + + + ++ AQG +Q A+ +A ++ P
Sbjct: 74 ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 133
Query: 168 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDA-----YLNLGNVYKALGMPQEA 222
A L L+ A + +++ ++ L A G A
Sbjct: 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA 193
Query: 223 IMCYQRAVQTRPN--------AIAFGNLASTYYERGQADMAILYYKQAI----GCDPRFL 270
R N + A + G A + + +
Sbjct: 194 RSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSL---QPSHPQALTNLGNIYMEWNMLPAAASYY 327
+ N+ A +G + A + NL
Sbjct: 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL----------------- 296
Query: 328 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
L +Y Q G +DA + L++
Sbjct: 297 --------------LLLNQLYWQAGRKSDAQRVLLDALKL 322
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 1e-22
Identities = 36/311 (11%), Positives = 76/311 (24%), Gaps = 42/311 (13%)
Query: 31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR-----FAECYGNMANAWKEKGDIDL 85
+ + L + + D + AL P + KG++
Sbjct: 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTR 71
Query: 86 AIRYYLVAIEL------RPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL--------N 131
++ ++ + + +G L A + +A L
Sbjct: 72 SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 131
Query: 132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-----QPTFAIAWSNLAGLFMESGDLN 186
P+ L+ A + EA + + + + L + GDL+
Sbjct: 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLD 191
Query: 187 RALQYYKEAVKL-------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ-----TRP 234
A L +A ++ G A + +
Sbjct: 192 NARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251
Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAI------GCDPRFLEAYNNLGNALKDVGRVDE 288
+ N+A G+ + A + ++ L GR +
Sbjct: 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD 311
Query: 289 AIQCYNQCLSL 299
A + L L
Sbjct: 312 AQRVLLDALKL 322
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 86.2 bits (213), Expect = 4e-18
Identities = 41/303 (13%), Positives = 73/303 (24%), Gaps = 42/303 (13%)
Query: 175 LAGLFMESGDLNRALQYYKEAVKLKPTFPD-----AYLNLGNVYKALGMPQEAIMCYQRA 229
A + + G+ + A + K A++ P A LG V G ++ Q+
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 230 VQTRP-------NAIAFGNLASTYYERGQADMAILYYKQAI--------GCDPRFLEAYN 274
Q + + + +G A ++A P
Sbjct: 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139
Query: 275 NLGNALKDVGRVDEAIQCYNQCLSL-----QPSHPQALTNLGNIYMEWNMLPAAASYYKA 329
L R+DEA + + Q L L + L A S
Sbjct: 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 199
Query: 330 TLAVTTGLSAPF-------NNLAVIYKQQGNYADAISCYNEVLRID----PLAADGLVNR 378
+ + ++ G+ A A + + + N
Sbjct: 200 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259
Query: 379 GNTYKEIGRVTDAIQDYIRAITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432
+G A + L Y +G A + A
Sbjct: 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319
Query: 433 LLL 435
L L
Sbjct: 320 LKL 322
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 2e-12
Identities = 31/207 (14%), Positives = 60/207 (28%), Gaps = 23/207 (11%)
Query: 15 YKQALEHSNSVY-ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL-----EPRFAE 68
++A + N + E+ P+ + + + + D A + + + +
Sbjct: 116 QEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175
Query: 69 CYGNMANAWKEKGDIDLAIRYYLVAIEL-------RPNFADAWSNLASAYMRKGRLNEAA 121
C + +GD+D A L ++A + G AA
Sbjct: 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 235
Query: 122 QCCRQAL----ALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI------QPTFAIA 171
R A N L N+ G + A E
Sbjct: 236 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 295
Query: 172 WSNLAGLFMESGDLNRALQYYKEAVKL 198
L L+ ++G + A + +A+KL
Sbjct: 296 LLLLNQLYWQAGRKSDAQRVLLDALKL 322
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 19/170 (11%), Positives = 42/170 (24%), Gaps = 43/170 (25%)
Query: 284 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN 343
G DEA + L LP Y + +
Sbjct: 28 GNPDEAERLAKLALEE--------------------LPPGWFYSRIVAT---------SV 58
Query: 344 LAVIYKQQGNYADAISCYNEVLRI------DPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
L + +G +++ + ++ A L+ + G + A + +
Sbjct: 59 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK 118
Query: 398 AITIR--------PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
A + P A ++ A S + + + +
Sbjct: 119 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 4e-05
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 11/106 (10%)
Query: 344 LAVIYKQQGNYADAISCYNEVLRIDPLAAD-----GLVNRGNTYKEIGRVTDAIQDYIRA 398
A + GN +A L P G G +T ++ +
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 399 ITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
+ + + G ++ A ++ ++A L +
Sbjct: 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 125
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 7e-24
Identities = 17/105 (16%), Positives = 31/105 (29%)
Query: 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYL 159
+ + + ++ L EAA P +A +LG A
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75
Query: 160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 204
A + P + LA + N AL + + +P +
Sbjct: 76 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 8e-23
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 1/106 (0%)
Query: 131 NPLL-VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
NP + + G M + EA + + +P AW +L E+ A+
Sbjct: 12 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 71
Query: 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
A L P + L + A+ + + ++P
Sbjct: 72 IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 1e-22
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 262
+ + G L EA + ++ Q P A+ +L T E + +AI+ A
Sbjct: 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHA 77
Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 305
DP+ + + L + + + A+ L QP + Q
Sbjct: 78 RMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 2e-22
Identities = 22/99 (22%), Positives = 41/99 (41%)
Query: 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 402
+ + N A+A + V + +P + + G T E + AI A +
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 403 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441
P HA LA ++ + + AA+ S + LL +P + +
Sbjct: 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 9e-22
Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 4/116 (3%)
Query: 21 HSNSVY---ERNP-LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANA 76
+N+ Y NP + +N + G +L + E + EP E + ++
Sbjct: 1 QNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLT 60
Query: 77 WKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
E LAI A L P + LA ++ + N A R L P
Sbjct: 61 QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 2e-21
Identities = 17/93 (18%), Positives = 30/93 (32%)
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
+ + A L ++ +P EA+ +LG + + AI N L
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 333
P L + + AA + +A L
Sbjct: 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 3e-21
Identities = 15/98 (15%), Positives = 30/98 (30%)
Query: 72 NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
+ + ++ A + + P +AW +L + A A L+
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 169
P + H+ L + A + L QP +
Sbjct: 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 4e-16
Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 34/136 (25%)
Query: 268 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYY 327
+ E G ++ + + EA + +P +A +LG E
Sbjct: 15 MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE----------- 63
Query: 328 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR 387
AI N +DP ++
Sbjct: 64 -----------------------NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100
Query: 388 VTDAIQDYIRAITIRP 403
A+ + +P
Sbjct: 101 ANAALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 2e-13
Identities = 12/77 (15%), Positives = 26/77 (33%)
Query: 370 LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429
+ + + G + ++ + +A + P EA +L ++ AI +
Sbjct: 15 MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74
Query: 430 KQALLLRPDFPEATCNL 446
A +L P L
Sbjct: 75 NHARMLDPKDIAVHAAL 91
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 3e-13
Identities = 16/101 (15%), Positives = 36/101 (35%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
M M K + +A +V ++ P R + LG + + I A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102
L+P+ + +A + + + + A+ + +P +
Sbjct: 80 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 8e-24
Identities = 15/114 (13%), Positives = 34/114 (29%), Gaps = 3/114 (2%)
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLA 243
+ + + + LG Y A+ + A+ P ++A+ L
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 244 STYYERGQADMAILYYKQAIGCDPRF--LEAYNNLGNALKDVGRVDEAIQCYNQ 295
T +G A ++ + + L L+ + R D ++
Sbjct: 61 KTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHHH 114
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 7e-23
Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 3/111 (2%)
Query: 220 QEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 278
Q + + N + L TY E Q D A+ + + A+ DP + A+ LG
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 279 ALKDVGRVDEAIQCYNQCLSLQPSH--PQALTNLGNIYMEWNMLPAAASYY 327
L+ G A Q + L+ S Q + L A ++
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 1e-21
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 2/108 (1%)
Query: 53 IARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112
R E L + + E D A+ + A++ P ++ AW L
Sbjct: 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ 64
Query: 113 RKGRLNEAAQCCRQALALNPLLVD--AHSNLGNLMKAQGLVQEAYSCY 158
+G A Q LA D L ++ +
Sbjct: 65 GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 3e-20
Identities = 19/113 (16%), Positives = 31/113 (27%), Gaps = 2/113 (1%)
Query: 117 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176
+ + LA + LG A AL PT+++AW L
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 177 GLFMESGDLNRALQYYKEAVKLKPTFPD--AYLNLGNVYKALGMPQEAIMCYQ 227
GD A Q ++ + + D L + L +
Sbjct: 61 KTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHH 113
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 1e-18
Identities = 14/81 (17%), Positives = 22/81 (27%)
Query: 86 AIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145
+ + L Y + + A R AL +P A LG +
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 146 KAQGLVQEAYSCYLEALRIQP 166
+ QG A + L
Sbjct: 64 QGQGDRAGARQAWESGLAAAQ 84
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 2e-18
Identities = 14/87 (16%), Positives = 25/87 (28%)
Query: 356 DAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA 415
+L G TY E + A+ A+ PT + A L
Sbjct: 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62
Query: 416 YKDSGHVEAAIKSYKQALLLRPDFPEA 442
+ G A ++++ L +
Sbjct: 63 LQGQGDRAGARQAWESGLAAAQSRGDQ 89
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 5e-18
Identities = 15/110 (13%), Positives = 31/110 (28%), Gaps = 2/110 (1%)
Query: 255 AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314
+ + + LG + + D A+ L P++ A LG
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 315 MEWNMLPAAASYYKATLAV--TTGLSAPFNNLAVIYKQQGNYADAISCYN 362
A +++ LA + G L V ++ ++
Sbjct: 64 QGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHH 113
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 1e-15
Identities = 16/148 (10%), Positives = 31/148 (20%), Gaps = 36/148 (24%)
Query: 286 VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLA 345
+ + L+ + LG Y E
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAE----------------------------- 31
Query: 346 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM 405
+ A+ L DP + G T + G A Q + + +
Sbjct: 32 -----HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86
Query: 406 AEAHA--NLASAYKDSGHVEAAIKSYKQ 431
+ L + +A +
Sbjct: 87 GDQQVVKELQVFLRRLAREDALEHHHHH 114
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 7e-12
Identities = 15/115 (13%), Positives = 32/115 (27%), Gaps = 9/115 (7%)
Query: 14 SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNM 73
+ L + LG Y + +D + AL +P ++ + +
Sbjct: 7 RLEAMLA-------QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWL 59
Query: 74 ANAWKEKGDIDLAIRYYLVAIELRPNFAD--AWSNLASAYMRKGRLNEAAQCCRQ 126
+ +GD A + + + + D L R R +
Sbjct: 60 GKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHHH 114
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 9e-12
Identities = 12/62 (19%), Positives = 19/62 (30%)
Query: 390 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHT 449
+ + L Y + +AA+ + AL P + A L T
Sbjct: 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62
Query: 450 LQ 451
LQ
Sbjct: 63 LQ 64
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 9e-24
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 194 EAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQA 252
+ + GN + + A+ Y +A++ P NA+ F N A+ Y + G
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 253 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN 312
A+ ++AI DP + +AY +G AL + + EA+ Y + L L P + +NL
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122
Query: 313 IYME 316
++
Sbjct: 123 AELK 126
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 1e-23
Identities = 32/115 (27%), Positives = 52/115 (45%)
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
+ AE N + + + A+ +Y AIEL P A + N A+AY + G A
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176
Q C +A+ ++P A+ +G + + EA + Y +AL + P SNL
Sbjct: 67 QDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK 121
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 1e-22
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
Query: 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
+ + GN + A Y +A+ + P A+ + N A + + G+ A+
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66
Query: 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYE 248
Q + A+ + P + AY +G +L EA+ Y++A++ P N NL +
Sbjct: 67 QDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126
Query: 249 RGQA 252
+A
Sbjct: 127 LREA 130
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 1e-20
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 343 NLAVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 395
A K +GN + A+ Y + + ++P A NR Y ++G A+QD
Sbjct: 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDC 69
Query: 396 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
RAI I P ++A+ + A A+ YK+AL L PD NL
Sbjct: 70 ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 1e-19
Identities = 29/152 (19%), Positives = 47/152 (30%), Gaps = 34/152 (22%)
Query: 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 325
D E GN V + A+ Y + + L P++
Sbjct: 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY------------------- 48
Query: 326 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385
F N A Y + GNYA A+ + IDP + G +
Sbjct: 49 ---------------FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL 93
Query: 386 GRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417
+ +A+ Y +A+ + P +NL A
Sbjct: 94 NKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 4e-19
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 27 ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLA 86
E + + L G ++ +++ + +A+ L P A + N A A+ + G+ A
Sbjct: 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65
Query: 87 IRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146
++ AI + P ++ A+ + A + EA ++AL L+P SNL
Sbjct: 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI--- 122
Query: 147 AQGLVQEA 154
A+ ++EA
Sbjct: 123 AELKLREA 130
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-15
Identities = 21/152 (13%), Positives = 46/152 (30%), Gaps = 34/152 (22%)
Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
A + + + A+ +Y +AI +P + N A +G A+Q
Sbjct: 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70
Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
+ + + P +Y KA + + + +
Sbjct: 71 RAICIDP-----------------------AYSKA-----------YGRMGLALSSLNKH 96
Query: 355 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 386
+A++ Y + L +DP N ++
Sbjct: 97 VEAVAYYKKALELDPDNETYKSNLKIAELKLR 128
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-11
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 426
D A+ L GN ++ A+ Y +AI + P A N A+AY G+ A+
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66
Query: 427 KSYKQALLLRPDFPEA 442
+ ++A+ + P + +A
Sbjct: 67 QDCERAICIDPAYSKA 82
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 97.3 bits (242), Expect = 1e-23
Identities = 22/136 (16%), Positives = 40/136 (29%)
Query: 81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSN 140
G + + E+ + + +LA + G +A + L+
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 141 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP 200
LG +A G A Y + + A ++ G+L A A +L
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 201 TFPDAYLNLGNVYKAL 216
P+ V L
Sbjct: 121 NXPEFXELSTRVSSML 136
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 93.1 bits (231), Expect = 2e-22
Identities = 17/137 (12%), Positives = 35/137 (25%), Gaps = 3/137 (2%)
Query: 115 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 174
G L ++ ++ +L G ++A+ + + + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 175 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ--- 231
L G + A+ Y + P + G EA A +
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 232 TRPNAIAFGNLASTYYE 248
P S+ E
Sbjct: 121 NXPEFXELSTRVSSMLE 137
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 9e-21
Identities = 20/158 (12%), Positives = 34/158 (21%), Gaps = 11/158 (6%)
Query: 250 GQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN 309
G LE +L G ++A + L +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 310 LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 369
LG A Y + + A Q G A+A S +
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 370 LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 407
+ + + AI ++ M
Sbjct: 121 NXPEFXELSTR-----------VSSMLEAIKLKKEMKH 147
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 1e-20
Identities = 20/144 (13%), Positives = 41/144 (28%), Gaps = 11/144 (7%)
Query: 57 EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116
+ E ++A + G + A + L + + L + G+
Sbjct: 11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ 70
Query: 117 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176
+ A ++ + + G + EA S A +
Sbjct: 71 YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP------- 123
Query: 177 GLFMESGDLNRALQYYKEAVKLKP 200
E +L+ + EA+KLK
Sbjct: 124 ----EFXELSTRVSSMLEAIKLKK 143
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 85.7 bits (212), Expect = 1e-19
Identities = 21/123 (17%), Positives = 38/123 (30%)
Query: 320 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379
L + +++ +LA Q G Y DA + + +D + + G
Sbjct: 3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLG 62
Query: 380 NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
+ +G+ AI Y + + A G + A A L +
Sbjct: 63 ACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122
Query: 440 PEA 442
PE
Sbjct: 123 PEF 125
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 82.3 bits (203), Expect = 2e-18
Identities = 22/145 (15%), Positives = 45/145 (31%), Gaps = 5/145 (3%)
Query: 221 EAIMCYQRAVQTRPNAI-AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 279
+ + + +LA Y+ G + A ++ D + LG
Sbjct: 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGAC 64
Query: 280 LKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA 339
+ +G+ D AI Y+ + P+ + ++ L A S L A
Sbjct: 65 RQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE----LIA 120
Query: 340 PFNNLAVIYKQQGNYADAISCYNEV 364
+ + + +AI E+
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEM 145
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 4e-17
Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 18/154 (11%)
Query: 13 GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72
G+ E S+ E+ L L YQ Y+ + L+ + +
Sbjct: 8 GTIAMLNEISSDTLEQ-------LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 73 MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
+ + G DLAI Y + + A ++ G L EA A L
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
+ + S LEA++++
Sbjct: 121 NXPEFXELSTRV-----------SSMLEAIKLKK 143
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 2e-14
Identities = 21/119 (17%), Positives = 40/119 (33%)
Query: 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE 63
+LA Y+SG Y+ A ++ + + L LGA + YD+ I ++
Sbjct: 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85
Query: 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
+ A + G++ A +A EL N + + +
Sbjct: 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKE 144
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 5e-14
Identities = 14/112 (12%), Positives = 29/112 (25%)
Query: 352 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 411
G + I + L + + G DA + + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 412 LASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMF 463
L + + G + AI SY ++ P + L + +
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGL 112
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 96.5 bits (240), Expect = 4e-23
Identities = 20/154 (12%), Positives = 60/154 (38%), Gaps = 3/154 (1%)
Query: 72 NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
+ + + + + + ++ I P ++ W+ L Y+ + + + RQAL L
Sbjct: 15 DPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR 74
Query: 132 PLLVDAHSNLGNLMKAQG---LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRA 188
+ ++ L ++ Q + + + +AL + A LA + +A
Sbjct: 75 GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQA 134
Query: 189 LQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEA 222
++ +++ + L + + ++ A + + +
Sbjct: 135 IELWQKVMDLNSPRINRTQLVESINMAKLLQRRS 168
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 92.6 bits (230), Expect = 7e-22
Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 4/141 (2%)
Query: 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAI 237
F + LQ ++ ++ P + + LG Y +++ Y++A+Q R NA
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 238 AFGNLASTYYERGQADM---AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
+ LA+ Y + M +A+ D + A L + +AI+ +
Sbjct: 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQ 139
Query: 295 QCLSLQPSHPQALTNLGNIYM 315
+ + L + +I M
Sbjct: 140 KVMDLNSPRINRTQLVESINM 160
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 1e-19
Identities = 20/143 (13%), Positives = 44/143 (30%), Gaps = 3/143 (2%)
Query: 98 PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC 157
+ + + Q + + NP + + LG Q +
Sbjct: 7 RAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLA 66
Query: 158 YLEALRIQPTFAIAWSNLAGLFMESGD---LNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214
Y +AL+++ A ++ LA + + +A+ L A + L +
Sbjct: 67 YRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF 126
Query: 215 ALGMPQEAIMCYQRAVQTRPNAI 237
+AI +Q+ + I
Sbjct: 127 MQANYAQAIELWQKVMDLNSPRI 149
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 3e-17
Identities = 23/147 (15%), Positives = 47/147 (31%), Gaps = 6/147 (4%)
Query: 226 YQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR 285
+Q + + + + + + I +P+ E + LG
Sbjct: 3 WQAVRAEYQRQ---RDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND 59
Query: 286 VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN---MLPAAASYYKATLAVTTGLSAPFN 342
++ Y Q L L+ + + L + M + LA+ +
Sbjct: 60 YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119
Query: 343 NLAVIYKQQGNYADAISCYNEVLRIDP 369
LA Q NYA AI + +V+ ++
Sbjct: 120 LLASDAFMQANYAQAIELWQKVMDLNS 146
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 6e-17
Identities = 18/151 (11%), Positives = 46/151 (30%), Gaps = 3/151 (1%)
Query: 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASY 326
+ + + + +Q + P + + LG Y+ N +
Sbjct: 7 RAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLA 66
Query: 327 YKATLAVTTGLSAPFNNLAVIYKQQGNY---ADAISCYNEVLRIDPLAADGLVNRGNTYK 383
Y+ L + + + LA + Q + A + ++ L +D L+ +
Sbjct: 67 YRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF 126
Query: 384 EIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414
AI+ + + + + + S
Sbjct: 127 MQANYAQAIELWQKVMDLNSPRINRTQLVES 157
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 9e-16
Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 3/152 (1%)
Query: 6 AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR 65
HQ + + L+ NP ++ LLG Y +DY + +AL+L
Sbjct: 17 LHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE 76
Query: 66 FAECYGNMANAWKEKGD---IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
AE Y +A + A+ L N A LAS + +A +
Sbjct: 77 NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE 136
Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154
++ + LN ++ + ++ A+ L + +
Sbjct: 137 LWQKVMDLNSPRINRTQLVESINMAKLLQRRS 168
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 4e-12
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 3/102 (2%)
Query: 348 YKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 407
+ Q N + + +R +P ++ G Y ++++ Y +A+ +R AE
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 408 AHANLASAY---KDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
+A LA+ +AL L + A L
Sbjct: 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLL 121
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 16/76 (21%), Positives = 26/76 (34%)
Query: 375 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434
+ + + +Q I P +E A L Y ++ +Y+QAL
Sbjct: 13 QRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ 72
Query: 435 LRPDFPEATCNLLHTL 450
LR + E L L
Sbjct: 73 LRGENAELYAALATVL 88
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 2e-21
Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 1/124 (0%)
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
+ A+ ++D + +G ++EA + LA ++
Sbjct: 26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ 85
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAS 244
+A Y A L + G L P +A C++ +Q + A
Sbjct: 86 FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE-KLKIKAQ 144
Query: 245 TYYE 248
+Y +
Sbjct: 145 SYLD 148
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 6e-21
Identities = 16/114 (14%), Positives = 32/114 (28%), Gaps = 1/114 (0%)
Query: 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERG 250
K+ + D + + G +EA + ++ N LA+ Y +
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 251 QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 304
Q A Y A + G + +A +C+ +
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 2e-20
Identities = 16/108 (14%), Positives = 35/108 (32%)
Query: 93 AIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ 152
+ + D + A + KGR+ EA R + VD L + + + Q
Sbjct: 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQ 87
Query: 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP 200
+A Y A + + + +A + ++ ++
Sbjct: 88 QAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 1e-19
Identities = 14/111 (12%), Positives = 28/111 (25%), Gaps = 1/111 (0%)
Query: 158 YLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
+ I + A F G + A +++ D + L +Y+
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 218 MPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDP 267
Q+A Y A + + A ++ I
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 9e-19
Identities = 16/111 (14%), Positives = 31/111 (27%)
Query: 259 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 318
K ++ + + GR++EA + + + L IY
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 369
AA Y A+ P + + A C+ V++
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 5e-18
Identities = 15/132 (11%), Positives = 37/132 (28%)
Query: 307 LTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR 366
+T +I + + K A+ + + A + +G +A + +
Sbjct: 5 ITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI 64
Query: 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 426
D D ++ Y+ + A Y A + + A
Sbjct: 65 YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAK 124
Query: 427 KSYKQALLLRPD 438
+ ++ + D
Sbjct: 125 ECFELVIQHSND 136
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 6e-18
Identities = 18/109 (16%), Positives = 34/109 (31%)
Query: 58 EALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRL 117
+ + + + A + KG I+ A ++ D LA+ Y K +
Sbjct: 27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86
Query: 118 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
+AA A AL + G +A C+ ++
Sbjct: 87 QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 5e-17
Identities = 15/132 (11%), Positives = 42/132 (31%), Gaps = 4/132 (3%)
Query: 205 AYLNLGNVYKALGMPQEAIM---CYQRAVQTRPNAI-AFGNLASTYYERGQADMAILYYK 260
LN+ +AI + + + + A +Y +G+ + A ++++
Sbjct: 1 GSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFR 60
Query: 261 QAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320
D ++ L + + +A Y +L + + + G +
Sbjct: 61 FLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP 120
Query: 321 PAAASYYKATLA 332
A ++ +
Sbjct: 121 LKAKECFELVIQ 132
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 2e-16
Identities = 14/129 (10%), Positives = 34/129 (26%), Gaps = 7/129 (5%)
Query: 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE 63
A+ + + K + + + + +Y + +
Sbjct: 14 AVIDAINSGATLKDINAIPDDMMDD-------IYSYAYDFYNKGRIEEAEVFFRFLCIYD 66
Query: 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123
+ +A ++ K A Y VA L N + +R +A +C
Sbjct: 67 FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKEC 126
Query: 124 CRQALALNP 132
+ +
Sbjct: 127 FELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 1e-14
Identities = 15/108 (13%), Positives = 31/108 (28%), Gaps = 2/108 (1%)
Query: 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE 63
+ A+ Y G ++A + + D ++ L AIY + A L
Sbjct: 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100
Query: 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111
+ A + + I+ + + A +Y
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND--EKLKIKAQSY 146
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 3e-13
Identities = 13/105 (12%), Positives = 31/105 (29%)
Query: 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401
I + ++ + ++ I D + + + GR+ +A +
Sbjct: 6 TENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY 65
Query: 402 RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
+ LA+ Y+ + A Y A L + +
Sbjct: 66 DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Query: 384 EIGRVTDAIQDYIR-------AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
E ++ A+ D I I M + + A + + G +E A ++ +
Sbjct: 7 ENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD 66
Query: 437 PDFPEATCNLLHTLQ 451
+ L Q
Sbjct: 67 FYNVDYIMGLAAIYQ 81
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 2e-21
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123
A ++ NA ++ D + A +Y AIEL P+ ++N A+ Y + + E Q
Sbjct: 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64
Query: 124 CRQALALNP-------LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
C +A+ + L+ A S GN + Q + A + +L
Sbjct: 65 CEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 2e-20
Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 27/149 (18%)
Query: 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIM 224
AIA +L + D +A +Y +A++L P+ Y N VY E +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 225 CYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
++AV+ A +A + GNA +
Sbjct: 64 FCEKAVEVGRETRA--------------------------DYKLIAKAMSRAGNAFQKQN 97
Query: 285 RVDEAIQCYNQCLSLQPSHPQALTNLGNI 313
+ A+Q +++ LS P+ + + +
Sbjct: 98 DLSLAVQWFHRSLSEFRD-PELVKKVKEL 125
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 3e-20
Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 131 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 190
A +LGN Q ++A+ Y +A+ + P+ ++N A ++ E +Q
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 191 YYKEAVKLKP-------TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNA 236
+ ++AV++ A GN ++ A+ + R++ +
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 6e-20
Identities = 17/105 (16%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
+L +Q ++ A Y++ + +DP N+ Y E + + +Q +A+
Sbjct: 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70
Query: 401 IRP-------TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
+ +A+A + +A++ + A++ + ++L D
Sbjct: 71 VGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 9e-18
Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 27/135 (20%)
Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
AIA +L + Y++ + A ++Y +AI DP + YNN + + E +Q
Sbjct: 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCE 66
Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
+ + + KA + +++Q +
Sbjct: 67 KAVEVGR----------------ETRADYKLIAKA-----------MSRAGNAFQKQNDL 99
Query: 355 ADAISCYNEVLRIDP 369
+ A+ ++ L
Sbjct: 100 SLAVQWFHRSLSEFR 114
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 9e-17
Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
LG Y+ D++ ++A+ L+P Y N A + E+ +++ A+E+
Sbjct: 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73
Query: 99 N-------FADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
A A S +A+ ++ L+ A Q ++L+
Sbjct: 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 5e-12
Identities = 13/75 (17%), Positives = 28/75 (37%)
Query: 368 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 427
AA + GN + A Y +AI + P+ + N A+ Y + ++
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 428 SYKQALLLRPDFPEA 442
++A+ + +
Sbjct: 64 FCEKAVEVGRETRAD 78
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 5e-11
Identities = 18/100 (18%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLL---GAIYYQLHDYDMCIARNEEALRLEP-- 64
YK +++A H + E +P N+ A+Y++ + C+ E+A+ +
Sbjct: 19 YKQKDFEKAHVHYDKAIELDP---SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75
Query: 65 -----RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99
A+ NA++++ D+ LA++++ ++ +
Sbjct: 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-20
Identities = 12/89 (13%), Positives = 28/89 (31%), Gaps = 2/89 (2%)
Query: 63 EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
+P +A + + A+ + +E P++ + +L Y R R ++A
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 123 CCRQALALNPLLVDAHS--NLGNLMKAQG 149
Q + + L +
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAE 91
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-20
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
+ LA + + A A+ +++ + DP ++ Y +LG + + R D+AI Y
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65
Query: 295 QCLSLQPSHP--QALTNLGNIYME 316
Q + + + L+ L + ++
Sbjct: 66 QGIEVAREEGTQKDLSELQDAKLK 89
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 4e-19
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 3/97 (3%)
Query: 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILY 258
P P L + A+ ++ V+T P+ + +L Y + D AI
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 259 YKQAIGCDPRFLEAY--NNLGNALKDVGRVDEAIQCY 293
Y Q I + L +A ++ +
Sbjct: 64 YAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 5e-19
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIM 224
P LA ++ + +RAL ++E V+ P + Y +LG +Y+ L +AI
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 225 CYQRAVQTRP---NAIAFGNLASTYYERGQADMAILYY 259
Y + ++ L + + ++
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-18
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 2/97 (2%)
Query: 98 PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC 157
P LA +++ + A + + +P V + +LG L + +A
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 158 YLEALRIQPTF--AIAWSNLAGLFMESGDLNRALQYY 192
Y + + + S L +++ L ++
Sbjct: 64 YAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 2e-17
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401
LA + + N + A++ + E++ DP + G Y+ + R DAI Y + I +
Sbjct: 11 YALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70
Query: 402 RPTMAEAHA--NLASAYKDSGHVEAAIKSY 429
L A + +E +
Sbjct: 71 AREEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 4e-17
Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 131 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 190
+P L A + + E + P + + +L L+ + A+
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 191 YYKEAVKLKPTFPDAY--LNLGNVYKALG 217
Y + +++ L +
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAE 91
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 4e-16
Identities = 10/75 (13%), Positives = 24/75 (32%)
Query: 368 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 427
DP + + + A+ + + P + +L Y+ + AI
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 428 SYKQALLLRPDFPEA 442
+Y Q + + +
Sbjct: 63 TYAQGIEVAREEGTQ 77
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 2e-15
Identities = 13/91 (14%), Positives = 24/91 (26%), Gaps = 2/91 (2%)
Query: 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 325
DP L A+ + + + P + +LG +Y + A
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 326 YYKATLAV--TTGLSAPFNNLAVIYKQQGNY 354
Y + V G + L +
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAEGL 93
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-13
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
L + + + +A EE + +P + Y ++ ++ D AI Y IE+
Sbjct: 13 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72
Query: 99 NFADA--WSNLASAYMRKGRLNEA 120
S L A ++ L
Sbjct: 73 EEGTQKDLSELQDAKLKAEGLEHH 96
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-07
Identities = 7/49 (14%), Positives = 17/49 (34%)
Query: 403 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
P LA + + A+ +++ + PD+ +L +
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE 52
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 4e-20
Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 216 LGMPQEAIMCYQRAVQ---TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE 271
LG+ +A+ Y++A+ + A + L ST+ G+ A + P
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 272 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 304
L ++GR ++ ++ + ++
Sbjct: 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDE 95
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 5e-18
Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 14/118 (11%)
Query: 81 GDIDLAIRYYLVAIEL---RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDA 137
G A+ YY AI + A+ + L S + G +A + P
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 138 HSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
++ G ++ L+ + +A+ +Y +
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDE-----------TIQSYKQAILFYADK 110
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 6e-18
Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 13/119 (10%)
Query: 148 QGLVQEAYSCYLEALRI---QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 204
GL +A Y +A+ A + L F G+ +A VK P
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 205 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 263
+ V LG ++ + + + + Y++ AIL+Y +
Sbjct: 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ-----SYKQ-----AILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 5e-17
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 3/94 (3%)
Query: 351 QGNYADAISCYNEVLRI---DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 407
G A A+ Y + + A+ + G+T++ +G A + P
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 408 AHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441
A + G E ++ + + D
Sbjct: 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 1e-16
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 14/119 (11%)
Query: 250 GQADMAILYYKQAI---GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 306
G A+ YY++AI E Y LG+ + +G +A + P+H
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 307 LTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVL 365
+ +A T+ + +Y AI Y + L
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSD-----------DETIQSYKQAILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 2e-14
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 57 EEALRL---EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113
E+A+ AECY + + ++ G+ A ++ PN A
Sbjct: 14 EKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN 73
Query: 114 KGRLNEAAQCCRQALALNP 132
GR + + + +A
Sbjct: 74 LGRYEQGVELLLKIIAETS 92
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 7e-14
Identities = 18/150 (12%), Positives = 37/150 (24%), Gaps = 42/150 (28%)
Query: 284 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN 343
G +A+ Y + ++ + +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGK--------------------DLAEC-----------YLG 32
Query: 344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403
L ++ G Y A + ++ P V +GR ++ ++ I
Sbjct: 33 LGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92
Query: 404 TMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
+ S Y + AI Y L
Sbjct: 93 ----DDETIQS-Y------KQAILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 3e-10
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 386 GRVTDAIQDYIRAITI---RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
G A+ Y +AI +AE + L S ++ G A + P+
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 443 TCNL 446
Sbjct: 64 RVFY 67
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 7e-09
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 4/86 (4%)
Query: 14 SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNM 73
Y++A+ + L LG+ + L +Y A ++ P
Sbjct: 12 YYEKAIASGLQ----GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67
Query: 74 ANAWKEKGDIDLAIRYYLVAIELRPN 99
A G + + L I +
Sbjct: 68 AMVLYNLGRYEQGVELLLKIIAETSD 93
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 88.6 bits (219), Expect = 7e-19
Identities = 28/173 (16%), Positives = 46/173 (26%), Gaps = 24/173 (13%)
Query: 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 212
+ + +A + LNRA + E V+ P F A V
Sbjct: 195 ALLTNFYQAHDYLLHG------------DDKSLNRASELLGEIVQSSPEFTYARAEKALV 242
Query: 213 YKALGMPQ--------EAIMCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQ 261
V +I + A + +G+ D +
Sbjct: 243 DIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINT 302
Query: 262 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314
I + +L Y LG + G EA Y +L+P I+
Sbjct: 303 GIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF 354
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 79.0 bits (194), Expect = 1e-15
Identities = 25/194 (12%), Positives = 46/194 (23%), Gaps = 15/194 (7%)
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNL--GNLMKAQGLVQ---E 153
N ++L + + + + P +N + G +
Sbjct: 158 NQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNR 217
Query: 154 AYSCYLEALRIQPTFAIAWSNLAGLF--------MESGDLNRALQYYKEAVKLK--PTFP 203
A E ++ P F A + A + ++ L V L
Sbjct: 218 ASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS 277
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 263
Y G E+ + + + + L Y +G A Y A
Sbjct: 278 IIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAF 337
Query: 264 GCDPRFLEAYNNLG 277
P Y
Sbjct: 338 NLRPGANTLYWIEN 351
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 78.6 bits (193), Expect = 2e-15
Identities = 26/208 (12%), Positives = 58/208 (27%), Gaps = 18/208 (8%)
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALK-----DVGRVDEAIQCYNQ 295
+L + + + P N A D ++ A + +
Sbjct: 165 DLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGE 224
Query: 296 CLSLQPSHPQALTNLGNIYMEWNM--------LPAAASYYKATLAVTTGLSAPF--NNLA 345
+ P A + + + L A + + + + A
Sbjct: 225 IVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKA 284
Query: 346 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM 405
V +G ++ N + ++ + V G Y+ G +A Y+ A +RP
Sbjct: 285 VSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343
Query: 406 AEAHANLASAYKDSGHVEAAIKSYKQAL 433
+ ++ S V + + L
Sbjct: 344 NTLYWIENGIFQTS--VPYVVPYLDKFL 369
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 69.7 bits (170), Expect = 1e-12
Identities = 27/145 (18%), Positives = 42/145 (28%), Gaps = 14/145 (9%)
Query: 1 MHMALAHQMYKSG---SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNE 57
+ AH G S +A E + + +P T + H +
Sbjct: 198 TNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQL 257
Query: 58 E----------ALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL 107
L + Y A + KG D + + I+L ++ + L
Sbjct: 258 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLL 316
Query: 108 ASAYMRKGRLNEAAQCCRQALALNP 132
Y KG EAA A L P
Sbjct: 317 GKVYEMKGMNREAADAYLTAFNLRP 341
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 14/113 (12%), Positives = 30/113 (26%), Gaps = 3/113 (2%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLL--LLGAIYYQLHDYDMCIARNEE 58
+ + +++ L +++ + D
Sbjct: 243 DIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINT 302
Query: 59 ALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111
+ LE + Y + ++ KG A YL A LRP + +
Sbjct: 303 GIDLEMSWLN-YVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF 354
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 1e-18
Identities = 29/110 (26%), Positives = 50/110 (45%)
Query: 126 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 185
+NP L N GN +G +A Y EA++ P A +SN A + + +
Sbjct: 7 HHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF 66
Query: 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
AL+ +E ++L+PTF Y +A+ +A+ YQ+A+ +
Sbjct: 67 QLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 3e-18
Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 1/127 (0%)
Query: 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYE 248
++ + P N GN G +A+ Y A++ P +A + N A+ Y +
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Query: 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT 308
+ +A+ ++ I +P F++ Y AL+ + +A+ Y + L L S +A
Sbjct: 63 LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD 122
Query: 309 NLGNIYM 315
M
Sbjct: 123 GYQRCMM 129
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 1e-17
Identities = 27/119 (22%), Positives = 48/119 (40%)
Query: 57 EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116
+ P A N N +KGD A+++Y AI+ P A +SN A+ Y +
Sbjct: 6 HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 65
Query: 117 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNL 175
A + C + + L P + ++ ++A +A Y +AL + + A
Sbjct: 66 FQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY 124
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 3e-17
Identities = 30/129 (23%), Positives = 52/129 (40%)
Query: 20 EHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKE 79
H + NP + G +Q DY + EA++ P+ A+ Y N A + +
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Query: 80 KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHS 139
+ LA++ I+L P F ++ A+A +A ++AL L+ +A
Sbjct: 63 LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD 122
Query: 140 NLGNLMKAQ 148
M AQ
Sbjct: 123 GYQRCMMAQ 131
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 4e-17
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 343 NLAVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 395
+LA++ K +GN Y A+ Y E ++ +P A NR Y ++ A++D
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73
Query: 396 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
I + PT + + A+A + A+ Y++AL L EA
Sbjct: 74 EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 4e-15
Identities = 23/160 (14%), Positives = 47/160 (29%), Gaps = 34/160 (21%)
Query: 258 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW 317
++ +P N GN G +A++ Y + + P + +N
Sbjct: 4 HHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNR------- 56
Query: 318 NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVN 377
AA Y K + A+ E ++++P G
Sbjct: 57 -----AACYTK----------------------LLEFQLALKDCEECIQLEPTFIKGYTR 89
Query: 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417
+ + + T A+ Y +A+ + + EA
Sbjct: 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-10
Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 35/145 (24%)
Query: 226 YQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
+ P+ A+ N + +++G A+ +Y +AI +P+ + Y+N +
Sbjct: 5 HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64
Query: 285 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 344
A++ +C+ L+P ++ K +
Sbjct: 65 EFQLALKDCEECIQLEP-----------------------TFIKG-----------YTRK 90
Query: 345 AVIYKQQGNYADAISCYNEVLRIDP 369
A + +Y A+ Y + L +D
Sbjct: 91 AAALEAMKDYTKAMDVYQKALDLDS 115
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 2e-09
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
++ ++P A + N+GN + G A++ Y AI P A+ ++N A+ Y
Sbjct: 5 HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64
Query: 421 HVEAAIKSYKQALLLRPDFPEA 442
+ A+K ++ + L P F +
Sbjct: 65 EFQLALKDCEECIQLEPTFIKG 86
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 1e-18
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 17/129 (13%)
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
K+A+K K LGN A+ Y +A + P N N A+ Y+E+G
Sbjct: 2 KQALKEK--------ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD 53
Query: 252 ADMAILYYKQAIGCDPRFLE-------AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 304
+ ++AI E AY +GN+ + +AI YN+ L+ + P
Sbjct: 54 YNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-P 112
Query: 305 QALTNLGNI 313
L
Sbjct: 113 DVLKKCQQA 121
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 2e-18
Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 28/150 (18%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
A + N +K D D A+++Y A EL P +N A+ Y KG N+ + C +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186
A+ + E A A++ + + +
Sbjct: 64 AIEVGR---------------------------ENREDYRQIAKAYARIGNSYFKEEKYK 96
Query: 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKAL 216
A+ +Y +++ T PD K L
Sbjct: 97 DAIHFYNKSLAEHRT-PDVLKKCQQAEKIL 125
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 4e-17
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
LGN + A Y +A + PT +N A ++ E GD N+ + ++A
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64
Query: 196 VKLKPTFPD-------AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL 242
+++ + AY +GN Y ++AI Y +++
Sbjct: 65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC 118
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 2e-16
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 345 AVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
A+ K+ GN + A+ Y++ +DP + N+ Y E G + +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 398 AITIRP-------TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
AI + +A+A+A + ++Y + AI Y ++L
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 2e-15
Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 42/154 (27%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
LGN D A++ Y++ L P++ +TN +Y E
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-------------- 50
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP-------LAADGLVNRGNTYK 383
+G+Y + + + A GN+Y
Sbjct: 51 --------------------KGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90
Query: 384 EIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417
+ + DAI Y +++ T + A K
Sbjct: 91 KEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEK 123
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 6e-15
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
LG Y+ D+D + ++A L+P N A + EKGD + AIE+
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 99 N-------FADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
A A++ + ++Y ++ + +A ++LA +
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 1e-13
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 27/135 (20%)
Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
A+ L + Y++ D A+ +Y +A DP + N + G ++ +
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
+ + + + + KA + + Y ++ Y
Sbjct: 63 KAIEVGRENREDYRQ----------------IAKA-----------YARIGNSYFKEEKY 95
Query: 355 ADAISCYNEVLRIDP 369
DAI YN+ L
Sbjct: 96 KDAIHFYNKSLAEHR 110
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-10
Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLL---GAIYYQLHDYDMCIARNEEALRLEP-- 64
YK + AL+H + E +P N+ + A+Y++ DY+ C E+A+ +
Sbjct: 15 YKKKDFDTALKHYDKAKELDP---TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71
Query: 65 -----RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99
+ A+ Y + N++ ++ AI +Y ++
Sbjct: 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-08
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
A GN + A++ Y +A + PT N A+ Y + G + ++
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 432 ALLLRPDFPEA 442
A+ + + E
Sbjct: 64 AIEVGRENRED 74
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 2e-18
Identities = 25/100 (25%), Positives = 42/100 (42%)
Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
D + GN A+ +A Y +AL I P I SN A + SG +A + + A
Sbjct: 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELA 71
Query: 196 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
+ P + A+ LG + + A Y++ ++ N
Sbjct: 72 TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 6e-18
Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 9/154 (5%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
++ + NA + + AI Y A+ + P SN A+AY G+ +AA+
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186
A ++P A S LG + A Y + + + L
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG--------LE 122
Query: 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALG-MP 219
+ +EA + D + + G MP
Sbjct: 123 TTKRKIEEANRGAEPPADDVDDAAGASRGAGGMP 156
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 5e-17
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
Query: 345 AVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
+ K +GN Y+ AI Y + L I P L NR Y G+ A +D
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 398 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCN 445
A + P ++A + L A D + A ++Y++ + +
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 5e-16
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 262
D + GN A +AI Y +A+ P N I N A+ Y GQ + A + A
Sbjct: 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELA 71
Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 306
DP++ +A++ LG A D+ A + Y + + + +
Sbjct: 72 TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 1e-14
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 1/112 (0%)
Query: 43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102
+Y I +AL + P N A A+ G + A +A + P ++
Sbjct: 21 AMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK 80
Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154
AWS L A A + + + G L + ++EA
Sbjct: 81 AWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG-LETTKRKIEEA 131
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 8e-12
Identities = 24/141 (17%), Positives = 39/141 (27%), Gaps = 34/141 (24%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
+ + GNA +AI Y Q LS+ P++P L+N AA+Y
Sbjct: 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNR------------AAAYSA-- 57
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
G + A +DP + G ++
Sbjct: 58 --------------------SGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKG 97
Query: 391 AIQDYIRAITIRPTMAEAHAN 411
A + Y + I
Sbjct: 98 AKEAYEKGIEAEGNGGSDAMK 118
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 5e-11
Identities = 26/188 (13%), Positives = 52/188 (27%), Gaps = 39/188 (20%)
Query: 228 RAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 287
R++ P + + + R + AI Y QA+ P +N A G+ +
Sbjct: 3 RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE 62
Query: 288 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 347
+A + + P Y KA ++ L +
Sbjct: 63 KAAEDAELATVVDP-----------------------KYSKA-----------WSRLGLA 88
Query: 348 YKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 407
+Y A Y + + + + RG + I++ R +
Sbjct: 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG-----LETTKRKIEEANRGAEPPADDVD 143
Query: 408 AHANLASA 415
A +
Sbjct: 144 DAAGASRG 151
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 2e-08
Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 7/116 (6%)
Query: 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLL---GAIYYQLHDYDMCIARNEEALRLEPRF 66
Y +A++ P N + L A Y ++ E A ++P++
Sbjct: 22 MARKEYSKAIDLYTQALSIAP---ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
++ + + A + D A Y IE N ++ ++ EA +
Sbjct: 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKR-KIEEANR 133
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 9e-08
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 426
+D L + GN + AI Y +A++I P +N A+AY SG E A
Sbjct: 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAA 65
Query: 427 KSYKQALLLRPDFPEA 442
+ + A ++ P + +A
Sbjct: 66 EDAELATVVDPKYSKA 81
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 81.2 bits (200), Expect = 7e-17
Identities = 34/257 (13%), Positives = 77/257 (29%), Gaps = 56/257 (21%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
A+ A ++ + +++LA +L A + + G +EA
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADY--------------QKKAGNEDEAGNT--- 79
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF------AIAWSNLAGLF- 179
+ K+ G A A++I A L +
Sbjct: 80 -----------YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE 128
Query: 180 MESGDLNRALQYYKEAVKL------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ-- 231
+ D +A+ Y+ A + ++ ++ G EA Y + ++
Sbjct: 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188
Query: 232 -----TRPNAIA-FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAY-----NNLGNAL 280
++ + F A A ++ DP F ++ +L +A+
Sbjct: 189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV 248
Query: 281 K--DVGRVDEAIQCYNQ 295
D ++ E + ++
Sbjct: 249 NEGDSEQLSEHCKEFDN 265
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 79.3 bits (195), Expect = 4e-16
Identities = 34/255 (13%), Positives = 63/255 (24%), Gaps = 54/255 (21%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 263
D + +Y+ A + +A A + G D A
Sbjct: 38 DLCVQAATIYRLRKELNLAGDSFLKA-------------ADYQKKAGNEDEAG------- 77
Query: 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ------ALTNLGNIY-ME 316
Y K G A+ + + Q LG I +
Sbjct: 78 -------NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND 130
Query: 317 WNMLPAAASYYKATLAVTTGLSAP------FNNLAVIYKQQGNYADAISCYNEVLRID-- 368
+ A Y+ + F A + G Y +A Y+++++
Sbjct: 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190
Query: 369 -----PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH-----ANLASAYK- 417
D + +G A + + P A++ +L A
Sbjct: 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE 250
Query: 418 -DSGHVEAAIKSYKQ 431
DS + K +
Sbjct: 251 GDSEQLSEHCKEFDN 265
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 3e-10
Identities = 29/193 (15%), Positives = 53/193 (27%), Gaps = 26/193 (13%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRL------EPRFAECYGNMANAWKEKGDIDLAIRYYLV 92
IY + ++ +A E Y +K G+ A+
Sbjct: 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN 102
Query: 93 AIELRPNF------ADAWSNLASAY-MRKGRLNEAAQCCRQALAL------NPLLVDAHS 139
AI++ + A+ L +A C A L
Sbjct: 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162
Query: 140 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF-------MESGDLNRALQYY 192
+L G EA Y + ++ ++ +L F + + D A +
Sbjct: 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222
Query: 193 KEAVKLKPTFPDA 205
+E P F D+
Sbjct: 223 QEGQSEDPNFADS 235
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-16
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPR-FLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
+G + A+ ++ + +P EAY +GNA + +G +A+ Y + L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 300 QPSHP--QALTNLGNIYMEWN 318
P P QA + +I +N
Sbjct: 65 NPDSPALQARKMVMDILNFYN 85
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 3e-14
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGL-VNRGNTYKEIGRVTDAIQDYIRAITI 401
QG+ +A+ E L+ +P+ D GN Y+++G A+ +Y AI +
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 402 RPTMAEAHAN 411
P A
Sbjct: 65 NPDSPALQAR 74
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 5e-14
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 377 NRGNTYKEIGRVTDAIQDYIRAITIRPT-MAEAHANLASAYKDSGHVEAAIKSYKQALLL 435
G + +A+Q + P EA+ + +AY+ G + A+ +Y+ A+ L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 436 RPDFPEA 442
PD P
Sbjct: 65 NPDSPAL 71
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 1e-13
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 17/106 (16%)
Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPD-AYLNLGNVYKALGMPQEAIMCYQRAVQT 232
+ GD+ ALQ +E ++ +P D AY +GN Y+ LG Q+A+ YQ A++
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 233 RPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 278
P++ A R + +Y + YN L +
Sbjct: 65 NPDSPA-------LQARKMVMDILNFYNKD---------MYNQLEH 94
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-13
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 72 NMANAWKEKGDIDLAIRYYLVAIELRPNFAD-AWSNLASAYMRKGRLNEAAQCCRQALAL 130
+GDI+ A++ ++ P D A+ + +AY + G +A + A+ L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 131 NP--LLVDAHSNLGNLMKA 147
NP + A + +++
Sbjct: 65 NPDSPALQARKMVMDILNF 83
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 6e-12
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 106 NLASAYMRKGRLNEAAQCCRQALALNPLLVD-AHSNLGNLMKAQGLVQEAYSCYLEALRI 164
+ +G + A Q + L P+ D A+ +GN + G Q+A + Y A+ +
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
P + + L +Y +
Sbjct: 65 NPDSPALQAR--------KMVMDILNFYNKD 87
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 6e-12
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 140 NLGNLMKAQGLVQEAYSCYLEALRIQPT-FAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198
+ QG ++ A E L+ +P A+ + + + GD +AL Y+ A++L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRA 229
P P A M + + Y +
Sbjct: 65 NPDSPALQ--------ARKMVMDILNFYNKD 87
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 6e-11
Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 33/95 (34%)
Query: 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
L + G ++ A+Q + L +P +YY
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVG------------------KDEAYY------- 39
Query: 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 369
+ Y++ G++ A++ Y + ++P
Sbjct: 40 --------LMGNAYRKLGDWQKALNNYQSAIELNP 66
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-09
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 35 NLLLLGAIYYQLHDYDMCIARNEEALRLEPR-FAECYGNMANAWKEKGDIDLAIRYYLVA 93
+ L D + + EE L+ EP E Y M NA+++ GD A+ Y A
Sbjct: 2 DQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61
Query: 94 IELRPNFADAWSN 106
IEL P+ +
Sbjct: 62 IELNPDSPALQAR 74
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-16
Identities = 29/110 (26%), Positives = 45/110 (40%)
Query: 126 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 185
+ +NP L N GN +G A Y EA++ P AI +SN A + +
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
RAL ++L F Y+ A+ +A Y+ A+Q P+
Sbjct: 64 QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS 113
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 3e-15
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 343 NLAVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 395
LA K +GN Y A+ YNE ++ DP A NR ++ A+ D
Sbjct: 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70
Query: 396 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
I + + + A+ A ++Y+ AL + P EA +
Sbjct: 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 7e-15
Identities = 26/112 (23%), Positives = 47/112 (41%)
Query: 56 NEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115
N + P A+ N N + +KGD A+R+Y A++ P A +SN A+ +
Sbjct: 2 NARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLM 61
Query: 116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
A C + L+ + + + A +A Y +AL++ P+
Sbjct: 62 EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS 113
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 1e-14
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 9/119 (7%)
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
+ A + K N GN Y G A+ Y AV+ P NAI + N A+ + +
Sbjct: 11 ELAQEEK--------NKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME 62
Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310
A+ I D +F++ Y L + +A + Y L + PS+ +A +
Sbjct: 63 FQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 3e-13
Identities = 24/120 (20%), Positives = 45/120 (37%)
Query: 27 ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLA 86
NP G Y++ DY + EA++ +P A Y N A + + A
Sbjct: 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRA 66
Query: 87 IRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146
+ I L F + A+ + ++A + AL ++P +A + N ++
Sbjct: 67 LDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-11
Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 34/152 (22%)
Query: 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 325
+P + N GN G A++ YN+ + P + A
Sbjct: 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN--------------------AI 48
Query: 326 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385
Y +N A + + A+ + +R+D G + + +
Sbjct: 49 LY--------------SNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94
Query: 386 GRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417
+ A + Y A+ + P+ EA + + +
Sbjct: 95 REWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-07
Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 37/130 (28%)
Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
GN Y+++G A+ +Y +A+ DP Y+N L + A+ + C+ L
Sbjct: 20 GN---EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76
Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
+ K + A ++ A
Sbjct: 77 DS-----------------------KFIKG-----------YIRKAACLVAMREWSKAQR 102
Query: 360 CYNEVLRIDP 369
Y + L++DP
Sbjct: 103 AYEDALQVDP 112
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-07
Identities = 18/80 (22%), Positives = 32/80 (40%)
Query: 363 EVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHV 422
+ I+P A N+GN Y + G A++ Y A+ P A ++N A+
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 423 EAAIKSYKQALLLRPDFPEA 442
+ A+ + L F +
Sbjct: 64 QRALDDCDTCIRLDSKFIKG 83
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 3e-16
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 73 MANAWKEKG-------DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCR 125
N KEKG +ID A++ Y AI+L P+ +SN ++AY +KG +A +
Sbjct: 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 126 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176
+ + L P +S ++ +EA Y E L+ + L
Sbjct: 63 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 8e-16
Identities = 25/101 (24%), Positives = 46/101 (45%)
Query: 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 194
V+ GN + G + +A CY EA+++ P + +SN + + + GD +A + +
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 195 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
V LKP + Y + L +EA Y+ ++ N
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 9e-16
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 9/119 (7%)
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
++ +LK GN ++G +A+ CY A++ P N + + N ++ Y ++G
Sbjct: 2 EQVNELK--------EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD 53
Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310
A + + P + + Y+ AL+ + R +EA + Y + L + ++PQ L
Sbjct: 54 YQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 9e-15
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 345 AVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
K++GN DA+ CY+E +++DP NR Y + G A +D +
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 398 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
+ ++P + ++ A+A + E A ++Y++ L + P+ L
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 4e-13
Identities = 23/104 (22%), Positives = 42/104 (40%)
Query: 43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102
+ + D + EA++L+P Y N + A+ +KGD A ++L+P++
Sbjct: 14 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK 73
Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146
+S A+A R EA + + L L N+
Sbjct: 74 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 6e-11
Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 34/145 (23%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
GN VG +D+A+QCY++ + L P N Y
Sbjct: 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP------HN--------------HVLY--- 41
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
+N + Y ++G+Y A + + + P G + + + R +
Sbjct: 42 -----------SNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 90
Query: 391 AIQDYIRAITIRPTMAEAHANLASA 415
A + Y + + L +
Sbjct: 91 AKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-07
Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 37/130 (28%)
Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
GN G D A+ Y +AI DP Y+N A G +A + + + L
Sbjct: 11 GN---KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
+P + K ++ A + + +A
Sbjct: 68 KP-----------------------DWGKG-----------YSRKAAALEFLNRFEEAKR 93
Query: 360 CYNEVLRIDP 369
Y E L+ +
Sbjct: 94 TYEEGLKHEA 103
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 9e-07
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 18/112 (16%)
Query: 8 QMYKSGSYKQALEH---------SNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEE 58
+ G+ AL+ N V N R A Y + DY +
Sbjct: 13 KALSVGNIDDALQCYSEAIKLDPHNHVLYSN--R-------SAAYAKKGDYQKAYEDGCK 63
Query: 59 ALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110
+ L+P + + Y A A + + A R Y ++ N L +
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 7e-16
Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 7/109 (6%)
Query: 345 AVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
A + +G + +A+ Y E+++ P A G NR ++ +AI D +
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 398 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
AI P A+ A+A +A+++ A + +
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 112
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 2e-15
Identities = 18/100 (18%), Positives = 31/100 (31%)
Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
+ G + A Y E ++ P A +SN A + A+ +A
Sbjct: 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 64
Query: 196 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
++ P F AY+ A+ A+ A
Sbjct: 65 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 104
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 3e-15
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 7/105 (6%)
Query: 74 ANAWKEKG-------DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
A + +G D A++ Y I+ P A +SN A+A + EA C +
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 171
A+ +P V A+ A A A
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 8e-15
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 1/109 (0%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 262
+ G Y A+ Y ++ P +A + N A+ + AI +A
Sbjct: 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 64
Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311
I DP F+ AY A V A++ + + +
Sbjct: 65 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 113
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 1e-12
Identities = 24/113 (21%), Positives = 39/113 (34%)
Query: 43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102
Y+ D+ + E ++ P A Y N A A + AI AIE PNF
Sbjct: 14 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 73
Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAY 155
A+ A+A + A + A + + + S Q+ +
Sbjct: 74 AYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQRF 126
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 3e-11
Identities = 17/142 (11%), Positives = 36/142 (25%), Gaps = 34/142 (23%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
E G A++ Y + + P A Y
Sbjct: 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--------------------ARGY--- 41
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
+N A + ++ +AI+ N+ + DP + + +
Sbjct: 42 -----------SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS 90
Query: 391 AIQDYIRAITIRPTMAEAHANL 412
A++ A T + +
Sbjct: 91 ALETLDAARTKDAEVNNGSSAR 112
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 6/97 (6%)
Query: 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLL---GAIYYQLHDYDMCIARNEEALRLEPRF 66
+ + A++ + +R P ++ A +L + IA +A+ +P F
Sbjct: 15 FTKSDWPNAVKAYTEMIKRAP---EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADA 103
Y A A + A+ A +
Sbjct: 72 VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 1e-15
Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 4/133 (3%)
Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
+ N + A Y +A+ + P+ AI + N + ++ + AL A
Sbjct: 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73
Query: 196 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 255
++L + Y ALG + A+ Y+ V+ +P+ A Y+ +
Sbjct: 74 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD----AKMKYQECNKIVK 129
Query: 256 ILYYKQAIGCDPR 268
+++AI D
Sbjct: 130 QKAFERAIAGDEH 142
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-15
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 9/122 (7%)
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
K A +LK N Y + AI Y +A++ P NAI +GN + Y
Sbjct: 11 KRAEELK--------TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC 62
Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311
A+ +AI D ++++ Y + +G+ A++ Y + ++P A
Sbjct: 63 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 122
Query: 312 NI 313
Sbjct: 123 EC 124
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 3e-15
Identities = 28/113 (24%), Positives = 49/113 (43%)
Query: 55 RNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRK 114
R+E + AE AN + + D + AI++Y AIEL P+ A + N + AY+R
Sbjct: 1 RDEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT 60
Query: 115 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
A +A+ L+ + + A G + A Y ++++P
Sbjct: 61 ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 2e-14
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 345 AVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
A K Q N Y +AI Y++ + ++P A NR Y A+ D R
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 398 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
AI + + + A++ G AA++ Y+ + ++P +A
Sbjct: 73 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 121
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 1e-12
Identities = 25/105 (23%), Positives = 41/105 (39%)
Query: 43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102
Y++ DY+ I +A+ L P A YGN + A+ A+ AIEL +
Sbjct: 23 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 82
Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA 147
+ A++ M G+ A + + + P DA K
Sbjct: 83 GYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 127
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 2e-11
Identities = 29/164 (17%), Positives = 50/164 (30%), Gaps = 36/164 (21%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
E N + AI+ Y+Q + L PS+ A YY
Sbjct: 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSN--------------------AIYY--- 50
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
N ++ Y + Y A+ + +D G R + +G+
Sbjct: 51 -----------GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 99
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYK--DSGHVEAAIKSYKQA 432
A++DY + ++P +A K E AI +
Sbjct: 100 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 14/140 (10%)
Query: 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLLG---AIYYQLHDYDMCIARNEEALRLEPRF 66
+K+ Y+ A++ + E NP N + G Y + Y + A+ L+ ++
Sbjct: 24 FKAKDYENAIKFYSQAIELNP---SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA--YMRKGRLNEA---- 120
+ Y A + G A+R Y ++++P+ DA +++ A
Sbjct: 81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 140
Query: 121 --AQCCRQALALNPLLVDAH 138
+ +L + + ++
Sbjct: 141 EHKRSVVDSLDIESMTIEDE 160
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 34/134 (25%)
Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
A A+ Y++ + AI +Y QAI +P Y N A A+ +
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 355
+ L Y K + A G +
Sbjct: 73 AIELDK-----------------------KYIKG-----------YYRRAASNMALGKFR 98
Query: 356 DAISCYNEVLRIDP 369
A+ Y V+++ P
Sbjct: 99 AALRDYETVVKVKP 112
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 3e-15
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 74 ANAWKEKG-------DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
A KE+G A Y AI P A ++N A Y++ + +A CR+
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
AL L+ V AH LG EA + A +
Sbjct: 69 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 3e-14
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 136 DAHSNLGN-LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 194
GN L EA +CY A+ P A+ ++N A +++ +AL +
Sbjct: 10 QELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 195 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
A++L A+ LG + EAI QRA
Sbjct: 69 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 6e-14
Identities = 21/89 (23%), Positives = 38/89 (42%)
Query: 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409
Y +A +CY + +PL A NR Y ++ + A+ D RA+ + +AH
Sbjct: 21 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 80
Query: 410 ANLASAYKDSGHVEAAIKSYKQALLLRPD 438
L + + AI + ++A L +
Sbjct: 81 FFLGQCQLEMESYDEAIANLQRAYSLAKE 109
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 2e-13
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
A +LK GN EA CY RA+ P A+ + N A Y + Q
Sbjct: 7 PSAQELK--------EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ 58
Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
+ A+ ++A+ D + ++A+ LG ++ DEAI + SL
Sbjct: 59 PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 114
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 6e-12
Identities = 18/90 (20%), Positives = 30/90 (33%)
Query: 43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102
+ Y A A+ P A Y N A + + + A+ A+EL
Sbjct: 19 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 78
Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALNP 132
A L + +EA ++A +L
Sbjct: 79 AHFFLGQCQLEMESYDEAIANLQRAYSLAK 108
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 9e-09
Identities = 21/138 (15%), Positives = 36/138 (26%), Gaps = 34/138 (24%)
Query: 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 325
+ GN L + EA CY + ++ P TN A
Sbjct: 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNR-----------ALC- 52
Query: 326 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385
Y + A++ L +D + G E+
Sbjct: 53 ----------------------YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 90
Query: 386 GRVTDAIQDYIRAITIRP 403
+AI + RA ++
Sbjct: 91 ESYDEAIANLQRAYSLAK 108
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 7e-07
Identities = 18/130 (13%), Positives = 33/130 (25%), Gaps = 37/130 (28%)
Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
GN + + A Y +AI +P Y N + + ++A+ + L L
Sbjct: 16 GN---RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 72
Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359
KA L + +Y +AI+
Sbjct: 73 DG-----------------------QSVKA-----------HFFLGQCQLEMESYDEAIA 98
Query: 360 CYNEVLRIDP 369
+
Sbjct: 99 NLQRAYSLAK 108
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 6/108 (5%)
Query: 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLL---GAIYYQLHDYDMCIARNEEALRLEPRF 66
+ Y +A RNP + Y ++ + +A AL L+ +
Sbjct: 20 FVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRK 114
+ + + E D AI A L + + + +R
Sbjct: 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 124
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 21/77 (27%), Positives = 32/77 (41%)
Query: 366 RIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA 425
+ +A L +GN + +A Y RAIT P +A + N A Y E A
Sbjct: 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 62
Query: 426 IKSYKQALLLRPDFPEA 442
+ ++AL L +A
Sbjct: 63 LADCRRALELDGQSVKA 79
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 4e-15
Identities = 54/302 (17%), Positives = 113/302 (37%), Gaps = 47/302 (15%)
Query: 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR-----LNEAAQCCRQALALNPLLVD 136
D +A +Y A E + + L Y +G +AQ R++
Sbjct: 166 DYVMAREWYSKAAEQ--GNVWSCNQLGYMY-SRGLGVERNDAISAQWYRKSATSG--DEL 220
Query: 137 AHSNLGNL-MKAQGLVQ---EAYSCYLEALRIQPTFAIAWSNLAGLFME----SGDLNRA 188
+L ++ G+ Q ++ + ++ + +IA L + + + + +A
Sbjct: 221 GQLHLADMYYFGIGVTQDYTQSRVLFSQS--AEQGNSIAQFRLGYILEQGLAGAKEPLKA 278
Query: 189 LQYYKEAVKLKPTFPDAYLNLGNVYK--ALGMPQ---EAIMCYQRAVQTRPNAIAFGNLA 243
L++Y+++ + D L ++Y A G+ + +AI Y ++ + + +A A NL
Sbjct: 279 LEWYRKSAEQG--NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-QGDATAQANLG 335
Query: 244 STYYERGQA---DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR-----VDEAIQCYNQ 295
+ Y+ G A+ ++++A A NLGNAL G+ +A +
Sbjct: 336 AIYFRLGSEEEHKKAVEWFRKA--AAKGEKAAQFNLGNALLQ-GKGVKKDEQQAAIWMRK 392
Query: 296 CLSLQPSHPQALTNLGNIYMEWNMLP----AAASYYKATLAVTTGLSAPFNNLAVIYKQQ 351
A LG IY + A +++ A T ++ I +++
Sbjct: 393 AAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFD--TASTNDMNLFGTENRNITEKK 448
Query: 352 GN 353
Sbjct: 449 LT 450
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 4e-08
Identities = 52/285 (18%), Positives = 96/285 (33%), Gaps = 57/285 (20%)
Query: 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA-LGMPQ---EAIMCYQRAVQTRPNAIAF 239
N L+ K+ + A L LG Y + +A+ ++RA + A
Sbjct: 22 LGNVNLEQLKQKAESG--EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-YTPAE 78
Query: 240 GNLASTYYERGQ-----ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR-----VDEA 289
L Y G+ A+++YK+A +A NLG + G E+
Sbjct: 79 YVLG-LRYMNGEGVPQDYAQAVIWYKKA--ALKGLPQAQQNLGVMYHE-GNGVKVDKAES 134
Query: 290 IQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP----AAASYYKATLAVTTGLSAPFNNLA 345
++ + + + ++G+ Y E + + A +Y A G N L
Sbjct: 135 VKWFRL--AAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYS--KAAEQGNVWSCNQLG 190
Query: 346 VIYKQ-QG---NYADAISCYNEVLRIDPLAAD-----GLVNRGNTYKEIGRVTDAIQDYI 396
+Y + G N A + Y +A G ++ + Y G QDY
Sbjct: 191 YMYSRGLGVERNDAISAQWYR-------KSATSGDELGQLHLADMYYF-GIGVT--QDYT 240
Query: 397 RAITIRPTMAE-----AHANLASAYKDSGHVE----AAIKSYKQA 432
++ + AE A L + A++ Y+++
Sbjct: 241 QSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKS 285
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 4e-14
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 74 ANAWKEKG-------DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
A KE+G A Y AI P A ++N A Y++ + +A CR+
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
AL L+ V AH LG EA + A +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 8e-13
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 136 DAHSNLGN-LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 194
GN L EA +CY A+ P A+ ++N A +++ +AL +
Sbjct: 5 QELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 195 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
A++L A+ LG + EAI QRA
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 1e-12
Identities = 21/89 (23%), Positives = 38/89 (42%)
Query: 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409
Y +A +CY + +PL A NR Y ++ + A+ D RA+ + +AH
Sbjct: 16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 75
Query: 410 ANLASAYKDSGHVEAAIKSYKQALLLRPD 438
L + + AI + ++A L +
Sbjct: 76 FFLGQCQLEMESYDEAIANLQRAYSLAKE 104
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 4e-12
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
A +LK GN EA CY RA+ P A+ + N A Y + Q
Sbjct: 2 PSAQELK--------EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ 53
Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
+ A+ ++A+ D + ++A+ LG ++ DEAI + SL
Sbjct: 54 PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 109
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 18/90 (20%), Positives = 30/90 (33%)
Query: 43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102
+ Y A A+ P A Y N A + + + A+ A+EL
Sbjct: 14 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 73
Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALNP 132
A L + +EA ++A +L
Sbjct: 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAK 103
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 4e-07
Identities = 23/145 (15%), Positives = 41/145 (28%), Gaps = 34/145 (23%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
+ GN L + EA CY + ++ P A YY
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV--------------------AVYY--- 41
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
N A+ Y + A++ L +D + G E+ +
Sbjct: 42 -----------TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDE 90
Query: 391 AIQDYIRAITIRPTMAEAHANLASA 415
AI + RA ++ + +
Sbjct: 91 AIANLQRAYSLAKEQRLNFGDDIPS 115
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 18/115 (15%), Positives = 36/115 (31%)
Query: 8 QMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA 67
+++ Y +A RNPL Y ++ + +A AL L+ +
Sbjct: 13 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72
Query: 68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
+ + + E D AI A L + + + +R +
Sbjct: 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 127
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 6e-06
Identities = 17/98 (17%), Positives = 33/98 (33%)
Query: 234 PNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293
P+A + + + A Y +AI +P Y N + + ++A+
Sbjct: 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61
Query: 294 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATL 331
+ L L +A LG +E A + +
Sbjct: 62 RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY 99
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 21/72 (29%), Positives = 31/72 (43%)
Query: 371 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 430
+A L +GN + +A Y RAIT P +A + N A Y E A+ +
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 431 QALLLRPDFPEA 442
+AL L +A
Sbjct: 63 RALELDGQSVKA 74
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 1e-13
Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 8/97 (8%)
Query: 74 ANAWKEKG-------DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
KE+G A+ Y I +P +SN A A ++ G +A Q C+Q
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR 163
L L Q A +
Sbjct: 64 GLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVV 99
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-12
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
+ GN + QGL +EA CY + + QP + +SN A ++ G+ +A+Q ++
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64
Query: 196 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 231
++ T + Y L + Q A+ Q V
Sbjct: 65 LRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVV 99
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-12
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409
+QG Y +A+ CY++++ P G N+ ++G T AIQ + + T
Sbjct: 16 KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVA 75
Query: 410 ANLASAYKDSGHVEAAIKSYKQAL 433
Y+ + A+ S + +
Sbjct: 76 IRSKLQYR-LELAQGAVGSVQIPV 98
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-11
Identities = 18/97 (18%), Positives = 32/97 (32%)
Query: 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIA 238
+ G A+ Y + + +P P Y N LG +AI Q+ ++ A
Sbjct: 14 LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH 73
Query: 239 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNN 275
+ Y A A+ + + E Y+
Sbjct: 74 VAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYDR 110
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-09
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 2/96 (2%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 262
+ GN G+ +EA+ CY + + +P N + + N A + G+ AI +Q
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64
Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298
+ + + A+ +
Sbjct: 65 LRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVV 99
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 6e-09
Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 2/99 (2%)
Query: 43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102
++ Y + ++ + +P+ Y N A A + G+ AI+ +
Sbjct: 14 LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH 73
Query: 103 AWSNLASAYMRKGRLNEAAQCCRQAL-ALNPLLVDAHSN 140
Y R A + + ++ L +
Sbjct: 74 VAIRSKLQY-RLELAQGAVGSVQIPVVEVDELPEGYDRS 111
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 7e-09
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
GN + +++G A+ Y Q I P+ Y+N AL +G +AIQ Q L
Sbjct: 11 GN---SLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67
Query: 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKA 329
+ Y A S
Sbjct: 68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIP 97
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 9e-09
Identities = 25/129 (19%), Positives = 39/129 (30%), Gaps = 35/129 (27%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
E GN+L G EA+ CY+Q ++ QP +P +N A + K
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNK------------AMALIK-- 50
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
G Y AI + LR A + Y+ +
Sbjct: 51 --------------------LGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR-LELAQG 89
Query: 391 AIQDYIRAI 399
A+ +
Sbjct: 90 AVGSVQIPV 98
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-06
Identities = 16/71 (22%), Positives = 28/71 (39%)
Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
+ +GN+ + G +A+ Y + IT +P ++N A A G AI+ +Q
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 432 ALLLRPDFPEA 442
L
Sbjct: 64 GLRYTSTAEHV 74
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 7/91 (7%)
Query: 8 QMYKSGSYKQALEHSNSVYERNPLRTDNLLLL---GAIYYQLHDYDMCIARNEEALRLEP 64
++K G Y++A+ + + P N + +L +Y I ++ LR
Sbjct: 13 SLFKQGLYREAVHCYDQLITAQP---QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIE 95
++ A+ + +
Sbjct: 70 TAEHVAIRSKLQYR-LELAQGAVGSVQIPVV 99
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 4e-13
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 12/125 (9%)
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP----NAIAFGNLASTYYE 248
+L+ GN G A+ Y +A+ A+ N A+ + +
Sbjct: 26 SSVEQLR--------KEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK 77
Query: 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT 308
D A +AI D ++A AL+ +GR+D+A+ +C+SL+P +
Sbjct: 78 LEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE 137
Query: 309 NLGNI 313
L NI
Sbjct: 138 ALRNI 142
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 1e-12
Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 350 QQGNYADAISCYNEVLRIDPLAADGLV---NRGNTYKEIGRVTDAIQDYIRAITIRPTMA 406
+ G+Y A++ Y + L +D D V NR + ++ A + +AI
Sbjct: 40 KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV 99
Query: 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
+A + A + G ++ A+ ++ + L P L
Sbjct: 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 2e-11
Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 10/114 (8%)
Query: 63 EPRFAECYGNMANAWKEKG-------DIDLAIRYYLVAIELRPNFAD---AWSNLASAYM 112
EPR A + +++G D A+ Y A+ L D N A+ ++
Sbjct: 17 EPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL 76
Query: 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
+ ++A +A+ + V A ++ G + +A + ++P
Sbjct: 77 KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 2e-11
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Query: 43 YYQLHDYDMCIARNEEALRLEPRFAE---CYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99
++ DY +A +AL L+ + + N A + D D A AIE
Sbjct: 38 LFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97
Query: 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA 147
A + A + GRL++A ++ ++L P L N+
Sbjct: 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 2e-11
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 5/109 (4%)
Query: 131 NPLLVDAHSNLGN-LMKAQGLVQEAYSCYLEALRIQPTF---AIAWSNLAGLFMESGDLN 186
V+ GN L K G A + Y +AL + T A+ N A ++ D +
Sbjct: 24 GASSVEQLRKEGNELFKC-GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYD 82
Query: 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
+A +A++ A + LG +A++ QR V P
Sbjct: 83 KAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 9e-11
Identities = 25/147 (17%), Positives = 44/147 (29%), Gaps = 31/147 (21%)
Query: 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 325
+E GN L G A+ Y Q L L + A
Sbjct: 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD-----------------QAV 66
Query: 326 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385
+ N A + + +Y A + ++ + D L R +++
Sbjct: 67 LH--------------RNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKL 112
Query: 386 GRVTDAIQDYIRAITIRPTMAEAHANL 412
GR+ A+ D R +++ P L
Sbjct: 113 GRLDQAVLDLQRCVSLEPKNKVFQEAL 139
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-08
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 3/103 (2%)
Query: 8 QMYKSGSYKQALEHSNSVYERNPLRTDNLLLLG---AIYYQLHDYDMCIARNEEALRLEP 64
+++K G Y AL + D +L A + +L DYD +A+ +
Sbjct: 37 ELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG 96
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL 107
+ + A ++ G +D A+ + L P L
Sbjct: 97 GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 5e-13
Identities = 52/318 (16%), Positives = 103/318 (32%), Gaps = 45/318 (14%)
Query: 73 MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG---RLNEAAQCCRQALA 129
+AN ++GD A + Y EL +++A LA + ++ +A R A
Sbjct: 9 LANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD 66
Query: 130 LNPLLVDAHSNLGNLMKA-QGLVQ----EAYSCYLEALRIQPTFAIAWSNLAGLFMESG- 183
+P A + LG L+ A G + EA S +A LA L+++
Sbjct: 67 TSP---RAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPH 121
Query: 184 ---DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ---EAIMCYQRAVQTRPNAI 237
++N Q + +P+A L +Y+ G + + +A I
Sbjct: 122 SFPNVNAQQQISQWQ---AAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT-TDI 177
Query: 238 AFGNLASTYYERG---QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
+ LA+ Y ++ Q + + + A A + +G
Sbjct: 178 CYVELATVYQKKQQPEQQAELLKQMEAG--VSRGTVTAQRVDSVA-RVLGDATLGTPDEK 234
Query: 295 QCLSLQPS----HPQALTNLGNIYMEWNMLP---AAASYYKATLAVTTGLSAPFNNLAVI 347
+L +P + +L + ++ L Y L +
Sbjct: 235 TAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLD--NGRAADQPRAELLLGKL 292
Query: 348 YKQ-QG---NYADAISCY 361
Y + + + A + +
Sbjct: 293 YYEGKWVPADAKAAEAHF 310
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 49/320 (15%), Positives = 96/320 (30%), Gaps = 45/320 (14%)
Query: 71 GNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR-----LNEAAQCCR 125
++ ++ I A Y A + A + L K +EA +
Sbjct: 42 ADIQVGTRDPAQIKQAEATYRAAAD---TSPRAQARLGRLLAAKPGATEAEHHEAESLLK 98
Query: 126 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT-FAIAWSNLAGLFMESG- 183
+A A + L L + + + Q + A L+ G
Sbjct: 99 KAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGT 156
Query: 184 --DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ---EAIMCYQRAVQTRPNAIA 238
++ +A T Y+ L VY+ P+ E + + V R A
Sbjct: 157 YDQHLDDVERICKAAL--NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS-RGTVTA 213
Query: 239 FGNLASTY-YERGQADM-----AILYYKQAIGCDPRFLEAYNNLGNALKDVGRV---DEA 289
+ A ++ P ++ +L L D + ++
Sbjct: 214 QRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYP---ASWVSLAQLLYDFPELGDVEQM 270
Query: 290 IQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP----AAASYYKATLAVTTGLSAPFNNLA 345
++ + P+A LG +Y E +P AA ++++ AV ++A L
Sbjct: 271 MKYLDN--GRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFE--KAVGREVAA-DYYLG 325
Query: 346 VIYKQ-QG---NYADAISCY 361
IY++ A+
Sbjct: 326 QIYRRGYLGKVYPQKALDHL 345
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 1e-10
Identities = 49/295 (16%), Positives = 83/295 (28%), Gaps = 37/295 (12%)
Query: 175 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ---EAIMCYQRAVQ 231
LA ++ GD A Q Y++ +L + +A + L ++ P +A Y+ A
Sbjct: 9 LANEALKRGDTVTAQQNYQQLAELG--YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD 66
Query: 232 TRPNAIAFGNLASTYYERGQA-----DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 286
T + A L + A A K+A L
Sbjct: 67 T--SPRAQARLGRLLAAKPGATEAEHHEAESLLKKA--FANGEGNTLIPLAMLYLQYPHS 122
Query: 287 DEAIQCYNQCLSLQPS-HPQALTNLGNIYMEW----NMLPAAASYYKATLAVTTGLSAPF 341
+ Q Q + +P+A +Y L KA L +
Sbjct: 123 FPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN---TTDICY 179
Query: 342 NNLAVIYKQQG---NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398
LA +Y+++ A+ + + G T D A
Sbjct: 180 VELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVL-GDATLGTPDEKTA 236
Query: 399 ITIRPTMAEAHA----NLASAYKDSGHV---EAAIKSYKQALLLRPDFPEATCNL 446
+ +A + +LA D + E +K D P A L
Sbjct: 237 QALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLL 289
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 43/332 (12%), Positives = 90/332 (27%), Gaps = 77/332 (23%)
Query: 80 KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR----LNEAAQCCRQALALNPLLV 135
+ + A A + LA Y++ +N Q + A P
Sbjct: 87 EAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYP--- 141
Query: 136 DAHSNLGNLMKAQGLVQ---EAYSCYLEALRIQPTFAIAWSNLAGLFMESG---DLNRAL 189
+A L + QG + +A T I + LA ++ + L
Sbjct: 142 EAGLAQVLLYRTQGTYDQHLDDVERICKA--ALNTTDICYVELATVYQKKQQPEQQAELL 199
Query: 190 QYY-------------------------------KEAVKL----KPTFPDAYLNLGNVYK 214
+ K A L P +P ++++L +
Sbjct: 200 KQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLY 259
Query: 215 ALGMPQ---EAIMCYQRAVQTRPNAIAFGNLASTYYE-RGQA---DMAILYYKQAIGCDP 267
+ + A L YYE + A ++++A+G +
Sbjct: 260 DFPELGDVEQMMKYLDNGRA-ADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAVGREV 318
Query: 268 RFLEAYNNLGNALK--DVGRVD--EAIQCYNQCLSLQPSHPQALTNLGNIYM-----EWN 318
A LG + +G+V +A+ + + A + ++ + +
Sbjct: 319 ---AADYYLGQIYRRGYLGKVYPQKALDHLLT--AARNGQNSADFAIAQLFSQGKGTKPD 373
Query: 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 350
A + + LA + +
Sbjct: 374 -PLNAYVFSQ--LAKAQDTPEANDLATQLEAP 402
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 8e-12
Identities = 55/282 (19%), Positives = 103/282 (36%), Gaps = 46/282 (16%)
Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL-MKAQGLVQ---EAYS 156
L + ++ +A + +A L NLG L + QG+ + +A S
Sbjct: 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAAS 63
Query: 157 CYLEALRIQPTFAIAWSNLAGLFMESG-----DLNRALQYYKEAVKLKPTFPDAYLNLGN 211
Y +A + ++ L L+ SG + N+ALQYY +A LK + + +LG
Sbjct: 64 FYAKACDLN--YSNGCHLLGNLY-YSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGG 118
Query: 212 VY-KALGMPQ---EAIMCYQRAVQTRPNAIAFGNLASTYYERGQ-----ADMAILYYKQA 262
+Y + + +A+ + +A + L + Y+ G+ A+ Y +A
Sbjct: 119 IYHDGKVVTRDFKKAVEYFTKACD-LNDGDGCTILG-SLYDAGRGTPKDLKKALASYDKA 176
Query: 263 IGCDPRFLEAYNNLGNALKDVGR-----VDEAIQCYNQCLSLQPSHPQALTNLGNIYM-- 315
CD + N GN G EA+ Y++ + + + NLG +
Sbjct: 177 --CDLKDSPGCFNAGNMYHH-GEGATKNFKEALARYSK--ACELENGGGCFNLGAMQYNG 231
Query: 316 ---EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
N A +K G + L + + ++
Sbjct: 232 EGVTRN-EKQAIENFK--KGCKLGAKGACDILKQLK-IKVHH 269
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 46/220 (20%), Positives = 82/220 (37%), Gaps = 41/220 (18%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY-KALGMPQ---EAIM 224
L + D +A +Y+++A LK NLG +Y + G+ + +A
Sbjct: 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAAS 63
Query: 225 CYQRAVQTRPNAIAFGNLASTYYERGQA-----DMAILYYKQAIGCDPRFLEAYNNLGNA 279
Y +A + L Y GQ + A+ YY +A CD ++ E +LG
Sbjct: 64 FYAKACD-LNYSNGCHLLG-NLYYSGQGVSQNTNKALQYYSKA--CDLKYAEGCASLGGI 119
Query: 280 LKDVGR-----VDEAIQCY----NQCLSLQPSHPQALTNLGNIYMEWNMLP----AAASY 326
D G+ +A++ + + + T LG++Y P A +
Sbjct: 120 YHD-GKVVTRDFKKAVEYFTKACDL------NDGDGCTILGSLYDAGRGTPKDLKKALAS 172
Query: 327 YKATLAVTTGLSAPFNNLAVIYKQ-QG---NYADAISCYN 362
Y A S N +Y +G N+ +A++ Y+
Sbjct: 173 YD--KACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYS 210
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 64.4 bits (156), Expect = 3e-11
Identities = 29/252 (11%), Positives = 57/252 (22%), Gaps = 35/252 (13%)
Query: 176 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNL-------GNVYKALGMPQEAIMCYQR 228
+ + M R+L + E + DA++ +
Sbjct: 13 SAVSMLPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSG 72
Query: 229 AVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE 288
+VQ + + R + + G +
Sbjct: 73 SVQISMSTLNA---------RIAIGGLYGDITYPVTSPLAITMGF---AACEAAQGNYAD 120
Query: 289 AIQCYNQCLSLQPSHPQALTNLGNIYME---W----NMLPAAASYYKATLAVTTGLSAPF 341
A++ H A +Y W + + +A + LA G+
Sbjct: 121 AMEALEAAPVAGSEHLVAWM-KAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGV---- 175
Query: 342 NNLAVIYKQQGNYADAISCYNEVL---RIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398
V + +A E + A + G + A+
Sbjct: 176 -AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234
Query: 399 ITIRPTMAEAHA 410
T P A A
Sbjct: 235 QTTHPEPKVAAA 246
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 2e-06
Identities = 35/282 (12%), Positives = 68/282 (24%), Gaps = 41/282 (14%)
Query: 115 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL-RIQPTFAIAWS 173
+ + + DA + ++ + I+ S
Sbjct: 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMS 79
Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233
L G L + Y + + A G +A+ + A
Sbjct: 80 TLNARI-AIGGLYGDITYPVT------SPLAITMGFAACEAAQGNYADAMEALEAAPVAG 132
Query: 234 PNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL--EAYNNLGNALKDVGRVDEAIQ 291
+ A Y + I K A +FL A G A ++ EA +
Sbjct: 133 SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAER 192
Query: 292 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 351
+ A A ++Y A+ + Q
Sbjct: 193 RLTEANDSPAGEACA---------------RAIAWYL----------------AMARRSQ 221
Query: 352 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 393
GN + A++ + P + +Y+ + I
Sbjct: 222 GNESAAVALLEWLQTTHPEPKVAAALKDPSYRLKTTTAEQIA 263
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 3e-05
Identities = 21/142 (14%), Positives = 35/142 (24%), Gaps = 6/142 (4%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
M A G+Y A+E + + +Y + I + + A +
Sbjct: 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVA-WMKAVVYGAAERWTDVIDQVKSAGK 163
Query: 62 LEPRFAECYGN--MANAWKEKGDIDLAIRYYLVAIE---LRPNFADAWSNLASAYMRKGR 116
+F A A R A + LA A +G
Sbjct: 164 WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN 223
Query: 117 LNEAAQCCRQALALNPLLVDAH 138
+ A +P A
Sbjct: 224 ESAAVALLEWLQTTHPEPKVAA 245
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 6e-11
Identities = 27/161 (16%), Positives = 48/161 (29%), Gaps = 26/161 (16%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
G G+ +A+ Y + +S L N A +
Sbjct: 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW----------LEYESSFSNEEAQKAQALRLA 197
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
NLA+ + + ++ AI N+ L +D GL RG + +
Sbjct: 198 S---------HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFEL 248
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
A D+ + + + P A LA + I+
Sbjct: 249 ARADFQKVLQLYPNNKAAKTQLAV-------CQQRIRRQLA 282
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 19/141 (13%)
Query: 8 QMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA 67
+K G YKQAL Y++ + + ++ NEEA + +
Sbjct: 156 VYFKEGKYKQALLQ----YKK------------IVSWLEYESSFS---NEEAQKAQALRL 196
Query: 68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127
+ N+A + AI A+EL N S A++ A ++
Sbjct: 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV 256
Query: 128 LALNPLLVDAHSNLGNLMKAQ 148
L L P A + L +
Sbjct: 257 LQLYPNNKAAKTQLAVCQQRI 277
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 1e-07
Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 24/138 (17%)
Query: 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFG----------- 240
+++ +K G VY G ++A++ Y++ V +F
Sbjct: 144 LEQSTIVK--------ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR 195
Query: 241 -----NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
NLA + + AI +A+ D + + G A V + A + +
Sbjct: 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQK 255
Query: 296 CLSLQPSHPQALTNLGNI 313
L L P++ A T L
Sbjct: 256 VLQLYPNNKAAKTQLAVC 273
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 5e-07
Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 17/143 (11%)
Query: 42 IYYQLHDYDMCIARNEEALRLEPRF--AECYGNMANAWKEKGDIDLAIRYYLVAIEL--- 96
+ Y+LH A+ + E + + + ++G A+ Y +
Sbjct: 120 LKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEY 179
Query: 97 RPNFADA------------WSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL 144
+F++ NLA +++ + A + C +AL L+ S G
Sbjct: 180 ESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEA 239
Query: 145 MKAQGLVQEAYSCYLEALRIQPT 167
A + A + + + L++ P
Sbjct: 240 HLAVNDFELARADFQKVLQLYPN 262
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 5e-06
Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 15/117 (12%)
Query: 134 LVDAHSNLGNLMKAQGLVQEAYSCYLEALR---------------IQPTFAIAWSNLAGL 178
G + +G ++A Y + + Q + NLA
Sbjct: 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205
Query: 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
++ + A++ +A++L G + A+ + A +Q+ +Q PN
Sbjct: 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 8e-06
Identities = 23/149 (15%), Positives = 49/149 (32%), Gaps = 27/149 (18%)
Query: 343 NLAVIYKQQGN-------YADAISCYNEVLR---------------IDPLAADGLVNRGN 380
+ I K++G Y A+ Y +++ L +N
Sbjct: 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204
Query: 381 TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440
+ ++ + AI+ +A+ + + + A+ E A +++ L L P+
Sbjct: 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264
Query: 441 EATCNLLHTLQCVCSWEDRDR-----MFS 464
A L Q + R++ MF
Sbjct: 265 AAKTQLAVCQQRIRRQLAREKKLYANMFE 293
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-10
Identities = 28/161 (17%), Positives = 46/161 (28%), Gaps = 22/161 (13%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
EA GN L EAI Y L+ + ++E +
Sbjct: 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK-------NIP 64
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
L + N++ Y G+ +A +EVL+ + L R ++ +
Sbjct: 65 L---------YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDE 115
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
A +D + P A A V K
Sbjct: 116 AEEDLKLLLRNHPAAASVVAREMKI------VTERRAEKKA 150
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 19/129 (14%), Positives = 36/129 (27%), Gaps = 15/129 (11%)
Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN 241
D A+ Y++A+ T + L R N + N
Sbjct: 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVEL---------------DRKNIPLYAN 68
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
++ Y G A + + + +A A ++DEA + L P
Sbjct: 69 MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128
Query: 302 SHPQALTNL 310
+ +
Sbjct: 129 AAASVVARE 137
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 16/139 (11%)
Query: 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC 69
+ YK+A++ Y A+ E + L+ +
Sbjct: 22 FVQKDYKEAIDA----YRD------------ALTRLDTLILREKPGEPEWVELDRKNIPL 65
Query: 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
Y NM+ + GD+ A ++ A A A + +L+EA + + L
Sbjct: 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125
Query: 130 LNPLLVDAHSNLGNLMKAQ 148
+P + ++ +
Sbjct: 126 NHPAAASVVAREMKIVTER 144
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 25/134 (18%)
Query: 343 NLAVIYKQQGN-------YADAISCYNEVLR------------------IDPLAADGLVN 377
+Q+GN Y +AI Y + L +D N
Sbjct: 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68
Query: 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437
Y IG + +A + + T +A A A + ++ A + K L P
Sbjct: 69 MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128
Query: 438 DFPEATCNLLHTLQ 451
+ +
Sbjct: 129 AAASVVAREMKIVT 142
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 9e-05
Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 18/114 (15%)
Query: 140 NLGNLMKAQGLVQEAYSCYLEALR------------------IQPTFAIAWSNLAGLFME 181
GN + Q +EA Y +AL + ++N++ ++
Sbjct: 16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN 75
Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
GDL+ A + E +K + T A A EA + ++ P
Sbjct: 76 IGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 2e-10
Identities = 100/694 (14%), Positives = 188/694 (27%), Gaps = 256/694 (36%)
Query: 15 YKQ-ALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR-----LEP-RFA 67
+Q ++ + +R+ L DN + Y++ + LR L P +
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFA--------KYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 68 ECYGNMANAWKEKGDIDLAIRYYL-VAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
G + + K +A+ L ++ + +F W NL C
Sbjct: 154 LIDG-VLGSGKTW----VALDVCLSYKVQCKMDFKIFWLNLK-------------NCNSP 195
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186
L L L Y +I P + + + + + +
Sbjct: 196 ETVLEMLQ--------KL------------LY----QIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 187 RALQYYKEAVKLKPTFPDAYLNLGNVY-----KALGMPQEAIMCYQRAVQTRPNAIAFGN 241
L+ +K KP + + L L NV A + C + + TR +
Sbjct: 232 AELRRL---LKSKP-YENCLLVLLNVQNAKAWNAFN-----LSC-KILLTTRFKQVTDFL 281
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
A+T ++ DE + L +P
Sbjct: 282 SAATTTHISLDHHSMTLTP--------------------------DEVKSLLLKYLDCRP 315
Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
LP + P +S
Sbjct: 316 Q----------------DLPREVL-----------TTNPR---------------RLSII 333
Query: 362 NEVLRIDPLAADGLVNRGNTYKEIG--RVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419
E +R + +K + ++T I+ + + P AE Y+
Sbjct: 334 AESIRDGL-------ATWDNWKHVNCDKLTTIIESSLNVLE--P--AE--------YR-- 372
Query: 420 GHVEAAIKSYKQALLLRPD--FPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMS 477
K + + + P P +L+ W D + S+V ++ + S
Sbjct: 373 -------KMFDRLSVFPPSAHIPTILLSLI--------WFDVIK--SDVMVVVNKLHKYS 415
Query: 478 VLPSVQPFHAIAYP-IDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRR 536
++ I+ P I L +++ +YA H SI+ F+ IP LD
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD----- 470
Query: 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDV 596
Y S G+H + N E+ E T +R F+D
Sbjct: 471 ---QYFYSHIGHH-----------LKNIEHPERM---------TLFRMV-------FLDF 500
Query: 597 SAMSSDMIAKLINEDK--------IQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGT 648
+ K+ ++ + L L Y + I P ++
Sbjct: 501 RFLE----QKIRHDSTAWNASGSILNTLQQLKFY----KPYICDNDPKYERLVN------ 546
Query: 649 TGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHC 682
+ +D+L E L+ +
Sbjct: 547 ---AILDFLPK------------IEENLICSKYT 565
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 8e-04
Identities = 49/315 (15%), Positives = 92/315 (29%), Gaps = 85/315 (26%)
Query: 591 EHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG 650
F D A + K + + IL +K + I M + + F
Sbjct: 23 SVFED--AFVDNFDCKDVQDMPKSIL------SKEEIDHII-MSKDAVSGTLRLF----- 68
Query: 651 ASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLP 710
L++ E++V FV + + N L + ++ +
Sbjct: 69 ----WTLLS------------KQEEMVQK----FVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 711 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSAL--WLLRFPAAGEMRLRAYAVAQGVQ 768
+I ++LY D ++F + N+ R P L LL E+R + G
Sbjct: 109 TRMYI-EQRDRLYN-DNQVFAKY-NVSRLQPYLKLRQALL------ELRPAKNVLIDG-- 157
Query: 769 PDQIIFTDVAM----KQEHIRRSSLA-DLFLDTPLCNAHTTGTDILWAGL-----PMITL 818
+ K + +A D+ L + I W L P L
Sbjct: 158 ----------VLGSGK------TWVALDVCLSYKVQCKMDFK--IFWLNLKNCNSPETVL 199
Query: 819 -PLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQAL--------TNK 869
L+K+ ++ + + I + + L + L
Sbjct: 200 EMLQKLLYQIDPNWT-SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 870 LKSVRLTCPLFDTAR 884
+ L+C + T R
Sbjct: 259 WNAFNLSCKILLTTR 273
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 4e-10
Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 27/162 (16%)
Query: 271 EAYNNLGNAL-KDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 329
GN K ++EAI Y + L + +L +
Sbjct: 39 FDIKEEGNEFFKK-NEINEAIVKYKEALDFFIHTE---------EWDDQILLDKKKNIEI 88
Query: 330 TLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVT 389
+ NLA Y + +Y AI ++VL+ID L G G +
Sbjct: 89 SC---------NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLE 139
Query: 390 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
+A ++ +A ++ P + + +K ++
Sbjct: 140 EAKENLYKAASLNPNNLDIRNSYEL-------CVNKLKEARK 174
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 4e-08
Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 17/135 (12%)
Query: 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIA 238
F + ++N A+ YKEA+ + + ++ ++ ++
Sbjct: 48 FFKKNEINEAIVKYKEALDFFIHTEE-------------WDDQILLDKKKNIE----ISC 90
Query: 239 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298
NLA+ Y + AI + + + D ++A LG A G ++EA + + S
Sbjct: 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150
Query: 299 LQPSHPQALTNLGNI 313
L P++ +
Sbjct: 151 LNPNNLDIRNSYELC 165
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 18/139 (12%)
Query: 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC 69
+K +A+ Y+ A+ + +H + + + C
Sbjct: 49 FKKNEINEAIVK----YKE------------ALDFFIHTEEW--DDQILLDKKKNIEISC 90
Query: 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
N+A + + D AI + +++ N A L A M G L EA + +A +
Sbjct: 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150
Query: 130 LNPLLVDAHSNLGNLMKAQ 148
LNP +D ++ +
Sbjct: 151 LNPNNLDIRNSYELCVNKL 169
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 9e-07
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 23/119 (19%)
Query: 72 NMANAWKEKG-------DIDLAIRYYLVAIELRPNFAD----------------AWSNLA 108
A KE+G +I+ AI Y A++ + + NLA
Sbjct: 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95
Query: 109 SAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
+ Y + +A + L ++ V A LG G ++EA +A + P
Sbjct: 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 28/150 (18%)
Query: 343 NLAVIYKQQGN-------YADAISCYNEVLRIDPLAADG----------------LVNRG 379
A K++GN +AI Y E L + +N
Sbjct: 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95
Query: 380 NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439
Y + AI + + I +A L A G +E A ++ +A L P+
Sbjct: 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155
Query: 440 PEATCNLLHTLQCVCSWEDRDR-----MFS 464
+ + + + +D+ MF
Sbjct: 156 LDIRNSYELCVNKLKEARKKDKLTFGGMFD 185
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 6e-06
Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 18/113 (15%)
Query: 140 NLGN-LMKAQGLVQEAYSCYLEALRI----------------QPTFAIAWSNLAGLFMES 182
GN K + + EA Y EAL + NLA + ++
Sbjct: 43 EEGNEFFK-KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 101
Query: 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
D +A+ + + +K+ A LG G +EA +A PN
Sbjct: 102 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 57.1 bits (137), Expect = 1e-09
Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 35/152 (23%)
Query: 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMA 74
++Q + + + Y+ NPL DNL G + +L +
Sbjct: 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFH------------------------ 53
Query: 75 NAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRL-----------NEAAQC 123
+ K I AI + A+ + P +A + +AY L + A Q
Sbjct: 54 SISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQF 113
Query: 124 CRQALALNPLLVDAHSNLGNLMKAQGLVQEAY 155
+QA+ P +L KA L EAY
Sbjct: 114 FQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY 145
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 56.3 bits (135), Expect = 2e-09
Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 25/122 (20%)
Query: 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD---------- 184
+D + ++ + + + P A + G+ +E
Sbjct: 6 MDTETEFDRILLFE----QIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQM 61
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVY-----------KALGMPQEAIMCYQRAVQTR 233
+ A+ ++EA+ + P +A +GN Y +A A +Q+AV +
Sbjct: 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121
Query: 234 PN 235
P+
Sbjct: 122 PD 123
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 4e-09
Identities = 27/136 (19%), Positives = 42/136 (30%), Gaps = 34/136 (25%)
Query: 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAST 245
+ Q + K P D G V L Q + A +
Sbjct: 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELS-------------QFHSISDAKQMI--- 62
Query: 246 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV-----------DEAIQCYN 294
AI +++A+ DP+ EA +GNA + D A Q +
Sbjct: 63 -------QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ 115
Query: 295 QCLSLQPSHPQALTNL 310
Q + QP + L +L
Sbjct: 116 QAVDEQPDNTHYLKSL 131
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 5e-08
Identities = 22/145 (15%), Positives = 44/145 (30%), Gaps = 38/145 (26%)
Query: 240 GNLAS----TYYERGQ-ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR--------- 285
G L S T ++R + + +P + G L ++ +
Sbjct: 1 GPLGSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ 60
Query: 286 -VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 344
+ EAI + + L + P +A+ +GN Y + L + K
Sbjct: 61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAK---------------- 104
Query: 345 AVIYKQQGNYADAISCYNEVLRIDP 369
N+ A + + + P
Sbjct: 105 -------HNFDLATQFFQQAVDEQP 122
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 1e-07
Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 21/134 (15%)
Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM----------KAQGLVQ 152
+ + + R + Q NPL D + G ++ A+ ++Q
Sbjct: 4 GSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQ 63
Query: 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL-----------NRALQYYKEAVKLKPT 201
EA + + EAL I P A + + L + A Q++++AV +P
Sbjct: 64 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123
Query: 202 FPDAYLNLGNVYKA 215
+L KA
Sbjct: 124 NTHYLKSLEMTAKA 137
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 5e-07
Identities = 24/159 (15%), Positives = 43/159 (27%), Gaps = 35/159 (22%)
Query: 272 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATL 331
+ + ++ Q P LT G + +E
Sbjct: 4 GSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE--------------- 48
Query: 332 AVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVT-- 389
+ I + +AI+ + E L IDP + + GN Y +T
Sbjct: 49 ---------LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPD 99
Query: 390 ---------DAIQDYIRAITIRPTMAEAHANLASAYKDS 419
A Q + +A+ +P +L K
Sbjct: 100 ETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 138
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 4e-06
Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 21/106 (19%)
Query: 354 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR----------VTDAIQDYIRAITIRP 403
+ + +PL AD L G E+ + + +AI + A+ I P
Sbjct: 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77
Query: 404 TMAEAHANLASAYKDSG-----------HVEAAIKSYKQALLLRPD 438
EA + +AY + + A + ++QA+ +PD
Sbjct: 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 1e-09
Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 26/142 (18%)
Query: 195 AVKLKPTFPDAYLNLGNVYKAL--GMPQEAIMCYQRAVQTRP-------------NAIAF 239
+K AYL L + + L G EA +RA++ +A
Sbjct: 1 GMKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCH 60
Query: 240 GNLASTYYERGQADMAILYYKQAIGCDPRFLE-----------AYNNLGNALKDVGRVDE 288
LA D A+ +A+ R E A + AL +GR E
Sbjct: 61 AGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAE 120
Query: 289 AIQCYNQCLSLQPSHPQALTNL 310
A+ + + + +
Sbjct: 121 AMPEFKKVVEMIEERKGETPGK 142
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 7e-08
Identities = 20/160 (12%), Positives = 46/160 (28%), Gaps = 35/160 (21%)
Query: 271 EAYNNLGNALKDV--GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYK 328
AY L +A + + G DEA + + + + P P A +
Sbjct: 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMP----------------PEEAFDHA 53
Query: 329 ATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD-----------GLVN 377
A LA ++ +A+ ++ L + + +
Sbjct: 54 GFDAF------CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYS 107
Query: 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417
R +GR +A+ ++ + + + +
Sbjct: 108 RALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 5e-06
Identities = 12/113 (10%), Positives = 28/113 (24%), Gaps = 23/113 (20%)
Query: 350 QQGNYADAISCYNEVLRIDPLAADG------------LVNRGNTYKEIGRVTDAIQDYIR 397
G Y +A + + I + +A+ +
Sbjct: 23 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 82
Query: 398 AITIRPTMAEAHA-----------NLASAYKDSGHVEAAIKSYKQALLLRPDF 439
A+ E + + A A G A+ +K+ + + +
Sbjct: 83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 6e-06
Identities = 17/141 (12%), Positives = 36/141 (25%), Gaps = 25/141 (17%)
Query: 63 EPRFAECYGNMANAWK--EKGDIDLAIRYYLVAIELRPNFAD------------AWSNLA 108
Y +++A + G+ D A A+E+ + LA
Sbjct: 5 LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLA 64
Query: 109 SAYMRKGRLNEAAQCCRQALALNPLLVDAHS-----------NLGNLMKAQGLVQEAYSC 157
A +EA +AL + + + + G EA
Sbjct: 65 EALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE 124
Query: 158 YLEALRIQPTFAIAWSNLAGL 178
+ + + + +
Sbjct: 125 FKKVVEMIEERKGETPGKERM 145
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 1e-05
Identities = 25/158 (15%), Positives = 45/158 (28%), Gaps = 33/158 (20%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
+ ++ A + +G Y +A + E + EEA
Sbjct: 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP----------------------EEAF 50
Query: 61 RLEPRFAECYGNMANAWKEKG-------DIDLAIRYYLVAIELRPNFADAWS----NLAS 109
A C+ +A A D A+ Y+ EL + W + A
Sbjct: 51 DHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRAL 110
Query: 110 AYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA 147
A GR EA ++ + + +M+
Sbjct: 111 ALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 148
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 2e-09
Identities = 32/157 (20%), Positives = 51/157 (32%), Gaps = 24/157 (15%)
Query: 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
GN+L +++EA+Q Y + + M Y LAV
Sbjct: 184 MDGNSLFKEEKLEEAMQQYEMAI--------------AYMGDDFMFQLYGKYQDMALAVK 229
Query: 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQD 394
N+A + Y +AI N VL + L RG E+G++ A D
Sbjct: 230 NPC---HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDD 286
Query: 395 YIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
+ +A P L + + K+ Q
Sbjct: 287 FRKAQKYAPDDKAIRRELRA-------LAEQEKALYQ 316
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 17/120 (14%)
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAI-----------------ELRPNFADAWSNL 107
A+ N+ ++ ++ A++ Y +AI N+
Sbjct: 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNI 236
Query: 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
A+ ++ R +EA C L A G G + A + +A + P
Sbjct: 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 24/139 (17%), Positives = 43/139 (30%), Gaps = 17/139 (12%)
Query: 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC 69
+K ++A++ YE AI Y + D M + C
Sbjct: 190 FKEEKLEEAMQQ----YEM------------AIAY-MGDDFMFQLYGKYQDMALAVKNPC 232
Query: 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
+ N+A + D AI + + + A A G+++ A R+A
Sbjct: 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292
Query: 130 LNPLLVDAHSNLGNLMKAQ 148
P L L + +
Sbjct: 293 YAPDDKAIRRELRALAEQE 311
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 3e-05
Identities = 22/147 (14%), Positives = 49/147 (33%), Gaps = 16/147 (10%)
Query: 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY 226
A + L A+Q Y+ A+ Y+ +++ G Q+ +
Sbjct: 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIA--------YMGDDFMFQLYGKYQDMALAV 228
Query: 227 QRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 286
+ N+A+ + + D AI + + + + +A G A ++G++
Sbjct: 229 KNPCHL--------NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQM 280
Query: 287 DEAIQCYNQCLSLQPSHPQALTNLGNI 313
D A + + P L +
Sbjct: 281 DSARDDFRKAQKYAPDDKAIRRELRAL 307
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 4e-09
Identities = 34/200 (17%), Positives = 58/200 (29%), Gaps = 25/200 (12%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ---EAIMC 225
A LA ++ SGD +A + ++A DA L + +A
Sbjct: 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIRNPQQADYPQARQL 75
Query: 226 YQRAVQTRPNAIAFGNLASTYYERGQA-----DMAILYYKQAI--GCDPRFLEAYNNLGN 278
++AV+ + LA QA AI + A ++A LG
Sbjct: 76 AEKAVE-AGSKSGEIVLA-RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGL 133
Query: 279 ALKDVGR-----VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA---- 329
G +A + + S A G ++ + + KA
Sbjct: 134 IYAS-GVHGPEDDVKASEYFKGS-SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWL 191
Query: 330 TLAVTTGLSAPFNNLAVIYK 349
++ G I K
Sbjct: 192 NVSCLEGFDTGCEEFDRISK 211
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 33/219 (15%), Positives = 68/219 (31%), Gaps = 34/219 (15%)
Query: 81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSN 140
G + Y E A LA ++ G +A ++A A DA +
Sbjct: 1 GATE-PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALAL 55
Query: 141 LGNLMKAQGLV----QEAYSCYLEALRIQPTFAIAWSNLAGLFMESG-----DLNRALQY 191
L +K + +A +A ++ LA + + D+ A+
Sbjct: 56 LA-QLKIRNPQQADYPQARQLAEKA--VEAGSKSGEIVLARVL-VNRQAGATDVAHAITL 111
Query: 192 YKEAVK--LKPTFPDAYLNLGNVY-KALGMPQ---EAIMCYQRAVQTRPNAIAFGNLAST 245
++A + DA + LG +Y + P+ +A ++ + A
Sbjct: 112 LQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG-M 170
Query: 246 YYERGQ-------ADMAILYYKQAIGCDPRFLEAYNNLG 277
+++G+ A+ + + C F
Sbjct: 171 MFQQGEKGFIEPNKQKALHWLNVS--CLEGFDTGCEEFD 207
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 1e-08
Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 2/137 (1%)
Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
+ S +++G +A + D + + + A L
Sbjct: 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE-LLA 64
Query: 161 ALRIQPTFAIAWSNLAGL-FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 219
+ ++ S +A L + + L+ ++ + P + L Y +G
Sbjct: 65 TIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRD 124
Query: 220 QEAIMCYQRAVQTRPNA 236
+EA+ ++ A
Sbjct: 125 EEALELLWNILKVNLGA 141
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 3e-08
Identities = 19/136 (13%), Positives = 39/136 (28%)
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
S ++G+ A+ + + + L + + + A +
Sbjct: 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY 70
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
+ + + LA LAV Y Q G +A+
Sbjct: 71 QDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALEL 130
Query: 361 YNEVLRIDPLAADGLV 376
+L+++ A DG V
Sbjct: 131 LWNILKVNLGAQDGEV 146
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 1e-07
Identities = 18/141 (12%), Positives = 37/141 (26%)
Query: 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIR 88
N + LL + Q ++ + + + A+ E +LA
Sbjct: 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE 61
Query: 89 YYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148
+ + ++ + + Q LA NP + L
Sbjct: 62 LLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQV 121
Query: 149 GLVQEAYSCYLEALRIQPTFA 169
G +EA L++
Sbjct: 122 GRDEEALELLWNILKVNLGAQ 142
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 4e-05
Identities = 18/166 (10%), Positives = 42/166 (25%), Gaps = 3/166 (1%)
Query: 131 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 190
N + + + QG +A + + A +E+ A +
Sbjct: 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE 61
Query: 191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYER 249
L + ++ + P N LA Y +
Sbjct: 62 LLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQV 121
Query: 250 GQADMAILYYKQAIGCDPRFLE--AYNNLGNALKDVGRVDEAIQCY 293
G+ + A+ + + + + L +G+ + Y
Sbjct: 122 GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 20/96 (20%), Positives = 39/96 (40%)
Query: 140 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 199
N + A Y +A+ + P+ AI + N + ++ + AL A++L
Sbjct: 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD 70
Query: 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
+ Y ALG + A+ Y+ V+ +P+
Sbjct: 71 KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 106
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 8e-08
Identities = 26/101 (25%), Positives = 45/101 (44%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
AE AN + + D + AI++Y AIEL P+ A + N + AY+R A +
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
A+ L+ + + A G + A Y ++++P
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 106
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 9e-08
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 9/119 (7%)
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
K A +LK N Y + AI Y +A++ P NAI +GN + Y
Sbjct: 4 KRAEELK--------TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC 55
Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310
A+ +AI D ++++ Y + +G+ A++ Y + ++P A
Sbjct: 56 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 114
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 24/136 (17%)
Query: 345 AVIYKQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
A K Q N Y +AI Y++ + ++P A NR Y A+ D R
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 398 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWE 457
AI + + + A++ G AA++ Y+ + ++P +A
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA--------------- 110
Query: 458 DRDRMFSEVEGIIRRQ 473
+ E I++++
Sbjct: 111 --KMKYQECNKIVKQK 124
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
A A + ++ D A+++Y +A++L P+ Y N Y A+ R
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 229 AVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 263
A++ YY R ++MA+ ++ A+
Sbjct: 66 AIELDK------KYIKGYYRRAASNMALGKFRAAL 94
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 19/113 (16%), Positives = 41/113 (36%)
Query: 305 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 364
+ L N Y + A +Y + + + + N ++ Y + Y A+
Sbjct: 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66
Query: 365 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417
+ +D G R + +G+ A++DY + ++P +A K
Sbjct: 67 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 119
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 25/105 (23%), Positives = 41/105 (39%)
Query: 43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102
Y++ DY+ I +A+ L P A YGN + A+ A+ AIEL +
Sbjct: 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 75
Query: 103 AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA 147
+ A++ M G+ A + + + P DA K
Sbjct: 76 GYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 120
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 5e-08
Identities = 28/178 (15%), Positives = 56/178 (31%), Gaps = 26/178 (14%)
Query: 254 MAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 313
A ++ G G+ +A+ Y + +S
Sbjct: 252 KAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--------------- 296
Query: 314 YMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD 373
++E + KA+ + F NLA+ Y + Y A+ C ++ L +D
Sbjct: 297 WLEM-EYGLSEKESKASESFLLAA---FLNLAMCYLKLREYTKAVECCDKALGLDSANEK 352
Query: 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
GL RG + A D+ + + + P A ++ + K + +
Sbjct: 353 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM-------CQKKAKEHNE 403
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 6e-06
Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 15/138 (10%)
Query: 45 QLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL---RPNFA 101
L ++ E + + A + + G A+ Y + +
Sbjct: 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS 305
Query: 102 D------------AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG 149
+ A+ NLA Y++ +A +CC +AL L+ G
Sbjct: 306 EKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMN 365
Query: 150 LVQEAYSCYLEALRIQPT 167
+ A + + L + P
Sbjct: 366 EFESAKGDFEKVLEVNPQ 383
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 9e-06
Identities = 21/148 (14%), Positives = 42/148 (28%), Gaps = 19/148 (12%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
+ +K G Y QA+ Y + + + +Y + +E+
Sbjct: 270 IVKEKGTVYFKGGKYMQAVIQ----YGK------------IVSWLEMEYGLS---EKESK 310
Query: 61 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
E + N+A + + + A+ A+ L A + A
Sbjct: 311 ASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESA 370
Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQ 148
+ L +NP A + K
Sbjct: 371 KGDFEKVLEVNPQNKAARLQISMCQKKA 398
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 7e-05
Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 16/128 (12%)
Query: 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV-------------QTRPNAI---AFGNL 242
K G VY G +A++ Y + V + AF NL
Sbjct: 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323
Query: 243 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302
A Y + + A+ +A+G D + G A + + A + + L + P
Sbjct: 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383
Query: 303 HPQALTNL 310
+ A +
Sbjct: 384 NKAARLQI 391
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 53.8 bits (128), Expect = 2e-07
Identities = 24/153 (15%), Positives = 55/153 (35%), Gaps = 9/153 (5%)
Query: 83 IDLAIRYYLVAIE-------LRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV 135
++ A +Y ++ + S L ++ + + + + +
Sbjct: 95 LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--ICQ 152
Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
+LG++ + + +A S Y A ++ P+ ++ LA L GD + YY +
Sbjct: 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212
Query: 196 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
+ +K FP A NL ++ +
Sbjct: 213 IAVKFPFPAASTNLQKALSKALESRDEVKTKWG 245
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 6e-06
Identities = 35/229 (15%), Positives = 78/229 (34%), Gaps = 25/229 (10%)
Query: 258 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI--QCYNQCLSLQPSHPQALTNLGNIYM 315
Y++ + D + V++ + + ++ + N +
Sbjct: 39 LYQKMLVTDLEYALDKK-----------VEQDLWNHAFKNQITTLQGQAKNRANPNRSEV 87
Query: 316 EWNM---LPAAASYYKATLAVTT---GLSAP----FNNLAVIYKQQGNYADAISCYNEVL 365
+ N+ L AA+ +Y L + P + L +I +Q + + + +
Sbjct: 88 QANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC 147
Query: 366 RIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA 425
+ LV+ G+ + + + A Y A + P+ + + LA G
Sbjct: 148 SY--ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTT 205
Query: 426 IKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQV 474
I Y +++ ++ FP A+ NL L D + V I+ +
Sbjct: 206 IFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFI 254
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 6e-06
Identities = 23/127 (18%), Positives = 35/127 (27%), Gaps = 1/127 (0%)
Query: 189 LQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYE 248
LQ + LG + + + +L
Sbjct: 106 LQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLV-HLGDIARY 164
Query: 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT 308
R Q A YY+ A P + YN L G I Y + ++++ P A T
Sbjct: 165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAST 224
Query: 309 NLGNIYM 315
NL
Sbjct: 225 NLQKALS 231
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 47.3 bits (111), Expect = 2e-05
Identities = 41/251 (16%), Positives = 74/251 (29%), Gaps = 45/251 (17%)
Query: 239 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298
F AS +Y + ++ ++ D + LG ++ + S
Sbjct: 94 FLEAASGFYTQLLQELCTVF-----NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS 148
Query: 299 LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAI 358
H L +LG+I N A SYY+ + P+N LA++ +G++ I
Sbjct: 149 YICQH--CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206
Query: 359 SCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 418
Y R+I ++ A NL A
Sbjct: 207 FY----------------------------------YCRSIAVKFPFPAASTNLQKALSK 232
Query: 419 SGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSV 478
+ +K+ DF +A + S E + ++E + +
Sbjct: 233 ALESRDEVKTKWG----VSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKA 288
Query: 479 LPSVQPFHAIA 489
S Q H
Sbjct: 289 FNSQQLVHVTV 299
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 46.5 bits (109), Expect = 4e-05
Identities = 33/221 (14%), Positives = 66/221 (29%), Gaps = 12/221 (5%)
Query: 15 YKQALEHSNSVYERNPLRTDNLLLLGAIY-YQLHDYDMCIARNEEALRLEPRFAECYGNM 73
Y Q L+ +V+ + LG I Q H + ++ + G++
Sbjct: 102 YTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDI 161
Query: 74 ANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPL 133
A + + A YY A +L P+ ++ LA KG +++A+
Sbjct: 162 A---RYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218
Query: 134 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF--AIAWSNLAGLFMESGDLNRALQY 191
A +NL + ++ F L+ + L L+
Sbjct: 219 FPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEE 278
Query: 192 YKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCY 226
+ + + F +NL ++ E
Sbjct: 279 QFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHT 319
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 6e-07
Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 3/131 (2%)
Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198
+ N + +G +Q+A +EA++ P A S+ L GD RA + +++KL
Sbjct: 2 TQWKNALS-EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60
Query: 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRA--VQTRPNAIAFGNLASTYYERGQADMAI 256
P + L ++ KA ++ A + + +
Sbjct: 61 FPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS 120
Query: 257 LYYKQAIGCDP 267
Q
Sbjct: 121 ELALQIEELRQ 131
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 15/67 (22%), Positives = 28/67 (41%)
Query: 386 GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCN 445
G++ A++ I AI P A ++ G E A + Q++ L P++
Sbjct: 11 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 70
Query: 446 LLHTLQC 452
L H ++
Sbjct: 71 LRHLVKA 77
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Length = 1630 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 6e-07
Identities = 74/336 (22%), Positives = 122/336 (36%), Gaps = 52/336 (15%)
Query: 14 SYKQALEHSNSVYERNPLRTDNLLLLGAIYY----------QLHDYD------MCIARN- 56
+ + NSV+ + NLL+L AI +L +YD + I+
Sbjct: 1006 ELLEKIVLDNSVFSEHR-NLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNEL 1064
Query: 57 -EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115
EEA + +F + + G++D A + R N WS LA A ++KG
Sbjct: 1065 FEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEF-----AERCNEPAVWSQLAKAQLQKG 1119
Query: 116 RLNEAAQCCRQALALNPL--LVDAHSNLGN-------LMKAQGLVQEAY------SCYLE 160
+ EA +A + +V A + GN L A+ +E+Y +
Sbjct: 1120 MVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 1179
Query: 161 ALRIQP-TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 219
R+ I N A + + GD + Y A KL + L + LG
Sbjct: 1180 TNRLAELEEFINGPNNAHI-QQVGDRCYDEKMYDAA-KLLYNNVSNFGRLASTLVHLGEY 1237
Query: 220 QEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 278
Q A+ ++A TR + F + + + +A + + LE L N
Sbjct: 1238 QAAVDGARKANSTRTWKEVCFACV-----DGKEFRLAQMCGLHIV-VHADELEE---LIN 1288
Query: 279 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314
+D G +E I L L+ +H T L +Y
Sbjct: 1289 YYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 1324
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 32/162 (19%), Positives = 51/162 (31%), Gaps = 25/162 (15%)
Query: 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 329
E N+GN + AI+ Y + L Y+E + A +
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLR---------------YVEGSRAAAEDADGAK 267
Query: 330 TLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVT 389
V N+ + ++ A+ E L IDP L R ++ +
Sbjct: 268 LQPVALSC---VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYD 324
Query: 390 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
A+ D +A I P A L V+ IK+ K
Sbjct: 325 QALADLKKAQEIAPEDKAIQAELLK-------VKQKIKAQKD 359
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 6e-06
Identities = 17/163 (10%), Positives = 44/163 (26%), Gaps = 13/163 (7%)
Query: 178 LFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI 237
+++ ++ + L + + ++ + + N
Sbjct: 97 KVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156
Query: 238 AFGNLASTYYERGQADMAILYYKQAIGC-------DPRFLEAYNNLGNALKDVGRVDEAI 290
+A+ Y E G I ++Q + + ++ N AL R +E++
Sbjct: 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216
Query: 291 QCYNQCLSLQPSH------PQALTNLGNIYMEWNMLPAAASYY 327
N+ + + Q G + A
Sbjct: 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA 259
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-05
Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 13/139 (9%)
Query: 138 HSNLGNLMKAQGLVQEAYSCYLEALRIQPT------FAIAWSNLAGLFMESGDLNRALQY 191
+ + + + + L Q T + +A ++ E+G L + +
Sbjct: 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDL 177
Query: 192 YKEAVKLKPTFPD-------AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAS 244
+++ +K D N +E++ +A++ + +
Sbjct: 178 FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237
Query: 245 TYYERGQADMAILYYKQAI 263
YY+RG+ + Y + I
Sbjct: 238 LYYQRGECLRKLEYEEAEI 256
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 5e-05
Identities = 17/149 (11%), Positives = 37/149 (24%), Gaps = 20/149 (13%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDN------LLLLGAIYYQLHDYDMCIAR 55
+A + K Y+ + + + D + IY + I
Sbjct: 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDL 177
Query: 56 NEEALRL-------EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFAD 102
E+ L+ E + N A A + ++ AIE+
Sbjct: 178 FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237
Query: 103 AWSNLASAYMRKGRLNEAAQCC-RQALAL 130
+ + + ++A
Sbjct: 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 7e-05
Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 14/109 (12%)
Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRI-------DPLAADGLVNRGNTYKEIGRVTDAIQ 393
N +A IY + G I + ++L+ + N R +++
Sbjct: 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217
Query: 394 DYIRAITI------RPTMAEAHANLASAYKDSGHVEAAIKSY-KQALLL 435
+AI I + + + + + EA I+ K+A
Sbjct: 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 25/217 (11%), Positives = 60/217 (27%), Gaps = 21/217 (9%)
Query: 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
+A ++ + + + + + + ++L Y+ + +E
Sbjct: 50 QGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP 109
Query: 63 EPR-FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAW------SNLASAYMRKG 115
E + F + +A +K D + I + + D + + +A+ Y G
Sbjct: 110 EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG 169
Query: 116 RLNEAAQCCRQALAL-------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI---- 164
L + Q L V N + +E+ +A+ I
Sbjct: 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229
Query: 165 --QPTFAIAWSNLAGLFMESG-DLNRALQYYKEAVKL 198
+ + + YK+A
Sbjct: 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 343 NLAVIYKQQGNYADAISCYNEVLRI---DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI 399
N+A + G Y DA + L + + L G +Y A + +
Sbjct: 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLV 66
Query: 400 TIRPT---MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443
+ PT A L + G A ++ +Q + +P +
Sbjct: 67 SRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQ---VATQYPGSD 110
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPT---FPDAYLNLGNVYKALGMPQEAIMCYQRAV 230
N+A +++G + A Q + ++L P P+A LG Y A Q A ++ V
Sbjct: 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLV 66
Query: 231 QTRPN----AIAFGNLASTYYERGQADMAILYYKQAI 263
P A L + Y G+ A +Q
Sbjct: 67 SRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVA 103
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Query: 175 LAGLFMESGDLNRALQYYKEAVKLKPT---FPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 231
L + + + A +++ V PT L LG G EA Q+
Sbjct: 45 LGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104
Query: 232 TRPNAIAFGNLASTYYERGQAD 253
P + A +A + +
Sbjct: 105 QYPGSDA-ARVAQERLQSIRLG 125
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 2e-04
Identities = 55/428 (12%), Positives = 115/428 (26%), Gaps = 47/428 (10%)
Query: 57 EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116
E+ L P + + + + ID A + Y + P+ W A ++
Sbjct: 3 EKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKN 61
Query: 117 LNEAAQCCRQALALNP-------LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 169
++ + ++ L L G L + + +AY L+ + ++
Sbjct: 62 YDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY 121
Query: 170 IAWSNLAGL---------FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 220
W + + E+ + + Y+ + Y
Sbjct: 122 QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW---RDYNKYEEGI 178
Query: 221 EAIMCYQRAVQTRPNAIAFGNLASTYYE--RGQADMAILYYKQAIGCDPRFLEAYNNLGN 278
+ + + + +A Y +G A Q + + ++ +
Sbjct: 179 NIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238
Query: 279 ALKDVGRVDE--------AIQCYNQCLSLQPSHPQA-------LTNLGNIYMEWNMLPAA 323
K E + Y QCL + HP L + E + A
Sbjct: 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 298
Query: 324 ASYYKATLAVTTGLSAPFN--------NLAVIYKQQGNYADAISCYNEVLRIDPLAAD-G 374
+ + + A + + Y S YN +L I+ +
Sbjct: 299 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLV 358
Query: 375 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS-AYKDSGHVEAAIKSYKQAL 433
+ + + + +A T + A Y S A K ++ L
Sbjct: 359 YIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGL 418
Query: 434 LLRPDFPE 441
D PE
Sbjct: 419 KKYGDIPE 426
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 7e-04
Identities = 12/195 (6%), Positives = 42/195 (21%), Gaps = 10/195 (5%)
Query: 142 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP- 200
G + + + + L + + + G +A + + +++
Sbjct: 186 GMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDG 245
Query: 201 -----TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 255
+ V ++ + N + ++ ++
Sbjct: 246 MFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305
Query: 256 ILYYKQAIG--CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 313
+ + P + G ++ L P
Sbjct: 306 RKLFIELGNEGVGPHVFIYCAFI--EYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363
Query: 314 YMEWNMLPAAASYYK 328
+ A + +K
Sbjct: 364 LLRIGDEENARALFK 378
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 922 | |||
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 100.0 | |
| 3q3e_A | 631 | HMW1C-like glycosyltransferase; N-glycosylation; 2 | 100.0 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.97 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.97 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.97 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.97 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.97 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.97 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.96 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.96 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.95 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.95 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.94 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.94 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.94 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.93 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.92 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.92 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.92 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.92 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.92 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.91 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.91 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.91 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.91 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.91 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.91 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.9 | |
| 3okp_A | 394 | GDP-mannose-dependent alpha-(1-6)-phosphatidylino | 99.89 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.89 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.89 | |
| 2x6q_A | 416 | Trehalose-synthase TRET; biosynthetic protein; 2.2 | 99.89 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.88 | |
| 3c48_A | 438 | Predicted glycosyltransferases; retaining glycosyl | 99.88 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.88 | |
| 2r60_A | 499 | Glycosyl transferase, group 1; rossmann-fold; 1.80 | 99.88 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.88 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.87 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.87 | |
| 3oy2_A | 413 | Glycosyltransferase B736L; rossmann fold, GDP-mann | 99.87 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.87 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.87 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.87 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.87 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.87 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.86 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.86 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.86 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.86 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.86 | |
| 3fro_A | 439 | GLGA glycogen synthase; glycosyltransferase family | 99.85 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.85 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.85 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.85 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.85 | |
| 2jjm_A | 394 | Glycosyl transferase, group 1 family protein; anth | 99.85 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.84 | |
| 2gek_A | 406 | Phosphatidylinositol mannosyltransferase (PIMA); G | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 2iuy_A | 342 | Avigt4, glycosyltransferase; antibiotics, family G | 99.83 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.83 | |
| 2iw1_A | 374 | Lipopolysaccharide core biosynthesis protein RFAG; | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.82 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.82 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.82 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.81 | |
| 1rzu_A | 485 | Glycogen synthase 1; glycosyl-transferase, GT-B fo | 99.81 | |
| 2qzs_A | 485 | Glycogen synthase; glycosyl-transferase, GT-B fold | 99.8 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.78 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.78 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.78 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.77 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.76 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.75 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.75 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.75 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.75 | |
| 3s28_A | 816 | Sucrose synthase 1; glycosyltransferase, sucrose m | 99.75 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.75 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.75 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.75 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.75 | |
| 1f0k_A | 364 | MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe | 99.73 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.73 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.73 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.73 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.72 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.72 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.71 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.71 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.7 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.7 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.69 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.69 | |
| 2bfw_A | 200 | GLGA glycogen synthase; glycosyltransferase family | 99.68 | |
| 3qhp_A | 166 | Type 1 capsular polysaccharide biosynthesis prote | 99.68 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.67 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.67 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.67 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.66 | |
| 2x0d_A | 413 | WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge | 99.66 | |
| 1vgv_A | 384 | UDP-N-acetylglucosamine 2-epimerase; structural ge | 99.65 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.65 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.64 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.64 | |
| 3beo_A | 375 | UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a | 99.64 | |
| 2f9f_A | 177 | First mannosyl transferase (WBAZ-1); alpha-beta pr | 99.64 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.63 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.63 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.62 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.62 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.61 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.6 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.59 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.57 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.57 | |
| 1v4v_A | 376 | UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t | 99.57 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.56 | |
| 3vue_A | 536 | GBSS-I, granule-bound starch synthase 1, chloropla | 99.56 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.56 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.56 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.56 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.56 | |
| 2xci_A | 374 | KDO-transferase, 3-deoxy-D-manno-2-octulosonic aci | 99.56 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.55 | |
| 2hy7_A | 406 | Glucuronosyltransferase GUMK; glycosyltransferases | 99.53 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.53 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.53 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.53 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.53 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.52 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.51 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.51 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.51 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.47 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.47 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.47 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.47 | |
| 1uqt_A | 482 | Alpha, alpha-trehalose-phosphate synthase; glycosy | 99.47 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.45 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.44 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.44 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.43 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.43 | |
| 3otg_A | 412 | CALG1; calicheamicin, TDP, structural genomics, PS | 99.43 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.43 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.43 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.42 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.42 | |
| 3ot5_A | 403 | UDP-N-acetylglucosamine 2-epimerase; structural ge | 99.42 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.41 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.4 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.39 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.39 | |
| 3dzc_A | 396 | UDP-N-acetylglucosamine 2-epimerase; structural ge | 99.39 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.38 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.38 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.38 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.38 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.37 | |
| 3tsa_A | 391 | SPNG, NDP-rhamnosyltransferase; glycosyltransferas | 99.37 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.37 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.37 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.36 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.36 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.35 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.35 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.33 | |
| 3t5t_A | 496 | Putative glycosyltransferase; GTB fold, pseudoglyc | 99.33 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.33 | |
| 4fzr_A | 398 | SSFS6; structural genomics, PSI-biology, protein s | 99.33 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.32 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.32 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.32 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.32 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.31 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.31 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.3 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.3 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.29 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.29 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.29 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.27 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.27 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.27 | |
| 3ia7_A | 402 | CALG4; glycosysltransferase, calicheamicin, enediy | 99.27 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.26 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.26 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.26 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.26 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.25 | |
| 3nb0_A | 725 | Glycogen [starch] synthase isoform 2; glycogen syn | 99.24 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.23 | |
| 3rsc_A | 415 | CALG2; TDP, enediyne, structural genomics, PSI-2, | 99.21 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.21 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.21 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.21 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.19 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.18 | |
| 2iyf_A | 430 | OLED, oleandomycin glycosyltransferase; antibiotic | 99.17 | |
| 3oti_A | 398 | CALG3; calicheamicin, TDP, structural genomics, PS | 99.17 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.17 | |
| 4hwg_A | 385 | UDP-N-acetylglucosamine 2-epimerase; ssgcid, struc | 99.16 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.16 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.16 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.16 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.14 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.14 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.13 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.12 | |
| 3s2u_A | 365 | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape | 99.09 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.08 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.97 | |
| 2p6p_A | 384 | Glycosyl transferase; X-RAY-diffraction,urdamycina | 98.91 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.89 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.88 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.87 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.86 | |
| 2yjn_A | 441 | ERYCIII, glycosyltransferase; transferase, cytochr | 98.85 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.84 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.84 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.82 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.74 | |
| 2o6l_A | 170 | UDP-glucuronosyltransferase 2B7; drug metabolism, | 98.72 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.72 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.71 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.69 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.69 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.69 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.64 | |
| 4amg_A | 400 | Snogd; transferase, polyketide biosynthesis, GT1 f | 98.63 | |
| 3rhz_A | 339 | GTF3, nucleotide sugar synthetase-like protein; gl | 98.61 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.61 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.6 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.59 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.54 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.5 | |
| 2iya_A | 424 | OLEI, oleandomycin glycosyltransferase; carbohydra | 98.45 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.4 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.4 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.39 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.3 | |
| 1iir_A | 415 | Glycosyltransferase GTFB; rossmann fold; 1.80A {Am | 98.22 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.17 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.17 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.04 | |
| 1rrv_A | 416 | Glycosyltransferase GTFD; GT-B, glycosyltransferas | 98.03 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.03 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.01 | |
| 3h4t_A | 404 | Glycosyltransferase GTFA, glycosyltransferase; van | 97.93 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.9 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.81 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 97.79 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.77 | |
| 1psw_A | 348 | ADP-heptose LPS heptosyltransferase II; structural | 97.74 | |
| 2c1x_A | 456 | UDP-glucose flavonoid 3-O glycosyltransferase; WIN | 97.66 | |
| 2pq6_A | 482 | UDP-glucuronosyl/UDP-glucosyltransferase; glycosyl | 97.63 | |
| 3hbf_A | 454 | Flavonoid 3-O-glucosyltransferase; glycosyltransfe | 97.62 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.58 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.54 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.48 | |
| 2acv_A | 463 | Triterpene UDP-glucosyl transferase UGT71G1; glyco | 97.46 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.43 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.42 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 97.4 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.37 | |
| 3tov_A | 349 | Glycosyl transferase family 9; structural genomics | 97.14 | |
| 2vch_A | 480 | Hydroquinone glucosyltransferase; glycosyltransfer | 97.1 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.06 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.06 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.93 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.93 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.79 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.74 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.28 | |
| 2gt1_A | 326 | Lipopolysaccharide heptosyltransferase-1; GT-B fol | 96.09 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.05 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.67 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.64 | |
| 2gj4_A | 824 | Glycogen phosphorylase, muscle form; transferase; | 95.61 | |
| 3hbm_A | 282 | UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter je | 95.55 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 95.36 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.25 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 94.95 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 94.82 | |
| 2c4m_A | 796 | Glycogen phosphorylase; allosteric control, phosph | 94.65 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.49 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.47 | |
| 1l5w_A | 796 | Maltodextrin phosphorylase; enzymatic catalysis, s | 94.42 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.22 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 94.19 | |
| 2jzc_A | 224 | UDP-N-acetylglucosamine transferase subunit ALG13; | 94.06 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.79 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.67 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.45 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 93.33 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.84 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.32 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 90.63 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 89.57 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.35 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 88.78 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 88.75 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 88.24 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 88.15 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.8 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 86.69 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.53 | |
| 3j20_B | 202 | 30S ribosomal protein S2P; archaea, archaeal, KINK | 84.45 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.65 |
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-113 Score=1000.55 Aligned_cols=609 Identities=47% Similarity=0.806 Sum_probs=542.6
Q ss_pred CCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 002431 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379 (922)
Q Consensus 300 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 379 (922)
.|+++++++++|.++.+.|++++|+..|+++++++|++..+++++|.+|.++|++++|+..|+++++++|+++.+++++|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56667777777777777777777777777777777777888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhH
Q 002431 380 NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR 459 (922)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 459 (922)
.++..+|++++|++.|+++++++|++..+++++|.+|.++|++++|++.|+++++++|+++.++.+++.++...|+|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCccccCCCccccee
Q 002431 460 DRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRV 539 (922)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri 539 (922)
...++++.++..+.....-.|...++..+.+..++.....++++++..+.........++..+|. ..+.+++||||
T Consensus 165 ~~~~~kal~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~aia~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~klrI 240 (723)
T 4gyw_A 165 DERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPK----DLKLSDGRLRV 240 (723)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSCTTGGGGSCCCHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCC----SSTTTTTCEEE
T ss_pred HHHHHHHHHhChhHHhhccCcccchhhhhhhhcCHHHHHHHHHHHHHhhhhhhhcccCccccCcc----cccccccccee
Confidence 88888888888888888888888899999999999888888888877655444433333332222 23356789999
Q ss_pred eeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCC-CHHHHHHHHHhCCCeEEEc
Q 002431 540 GYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM-SSDMIAKLINEDKIQILIN 618 (922)
Q Consensus 540 g~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~dil~~ 618 (922)
||+|+||++||+++++.+++++||+++|||++|+.++.+.+.++.+++..+++|+++.++ ++.+++++|++|+||||||
T Consensus 241 GyvS~df~~H~v~~~~~~~~~~~d~~~fei~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~i~~d~iDIlid 320 (723)
T 4gyw_A 241 GYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVN 320 (723)
T ss_dssp EEEESCSSSSHHHHHHTTHHHHSCTTTEEEEEEESSCCCSCHHHHHHHHHSSEEEEGGGCCCHHHHHHHHHHTTCSEEEE
T ss_pred eeechhhccCcHHHHHHHHHHHhccCceeEEEEEcCCCCccHHHHHHHHhhccccccccCCcHHHHHHHHHhccceeEEe
Confidence 999999999999999999999999999999999999877777899999999999999998 6899999999999999999
Q ss_pred CCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCccCCCccceeecCCccccCCCccccccC---
Q 002431 619 LNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDV--- 695 (922)
Q Consensus 619 ~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~--- 695 (922)
|+|||.++|+.+|++|||||||+|||||+|||++.|||+|+|.+++|++.+.+|+|++++||++++++++....+..
T Consensus 321 l~g~t~~~r~~i~a~r~APvQv~~lG~p~TtG~~~iDY~i~D~~~~P~~~~~~ysEklirLP~~~~~~d~~~~~p~~~~~ 400 (723)
T 4gyw_A 321 MNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKKK 400 (723)
T ss_dssp SCSSBTTCCTHHHHTCCSSEEEECSSCSSCCCCTTCCEEEECTTTSCGGGGGGCSSEEEECSSCSCCCCHHHHCGGGSSC
T ss_pred ccCCCCCCcchhhhcCCCCceeeeccCCCCCCCCcCCEEEeCCCCCCchhhhcceeeeeeCCCccccCCccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987643211100
Q ss_pred --------------------------------------------------------------------------------
Q 002431 696 -------------------------------------------------------------------------------- 695 (922)
Q Consensus 696 -------------------------------------------------------------------------------- 695 (922)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~ 480 (723)
T 4gyw_A 401 AVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNTALNMPVIPMNTIAEAVIEMINRGQIQIT 480 (723)
T ss_dssp EEECCC---CCCSSSEEEECTTHHHHHHTSSSCEEEC-----------------CEEEECSSHHHHHHHHHHHHTCCEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred -------------------------CCCCCCCCcCCCCCCCCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecC
Q 002431 696 -------------------------LDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRF 750 (922)
Q Consensus 696 -------------------------~~~~~~~~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~ 750 (922)
+.+.....|..+|||++.|||||||++.|++|.++++|++||+++|||+|||..+
T Consensus 481 ~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~R~~~gLp~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~ 560 (723)
T 4gyw_A 481 INGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRF 560 (723)
T ss_dssp ETTEEEEETTCHHHHCHHHHHTSSCCCSEEEEEGGGGTCCTTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEET
T ss_pred ccccccccccccccccccccccccccccccccchhhcCCCCCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 0001113789999999999999999999999999999999999999999999988
Q ss_pred ChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHH
Q 002431 751 PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS 830 (922)
Q Consensus 751 ~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~ 830 (922)
+...+..|++.+++.||+++||+|.++++..+|++.|+.+|||||||||+||||++|||||||||||++|.+|+||+|+|
T Consensus 561 ~~~~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s 640 (723)
T 4gyw_A 561 PAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAAS 640 (723)
T ss_dssp TGGGHHHHHHHHHHTTCCGGGEEEEECCCHHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHH
T ss_pred cHHHHHHHHHHHHhcCCCcCeEEECCCCCHHHHHHHhCCCeEEeCCCCcCCHHHHHHHHHcCCCEEEccCCCccHhHHHH
Confidence 88778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHhcCCCCCcce
Q 002431 831 LCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHCSGQKPQHFK 910 (922)
Q Consensus 831 ~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~~~~~~~~~~ 910 (922)
+|+.+|++| ||+.|.++|+++|++|++|++.++++|+++|+++.++|+||.++|+++||++|++||++||+|++|+||+
T Consensus 641 ~l~~~gl~e-~ia~~~~~Y~~~a~~la~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r~~~G~~p~~~~ 719 (723)
T 4gyw_A 641 QLTCLGCLE-LIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHYAAGNKPDHMI 719 (723)
T ss_dssp HHHHHTCGG-GBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred HHHHcCCcc-cccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 002431 911 VTE 913 (922)
Q Consensus 911 ~~~ 913 (922)
|+.
T Consensus 720 ~~~ 722 (723)
T 4gyw_A 720 KPV 722 (723)
T ss_dssp C--
T ss_pred ccC
Confidence 975
|
| >3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-74 Score=629.93 Aligned_cols=352 Identities=16% Similarity=0.148 Sum_probs=318.5
Q ss_pred CCcccceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC----HHHHHHH
Q 002431 532 GGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS----SDMIAKL 607 (922)
Q Consensus 532 ~~~~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 607 (922)
.+++++||||+|.+++.|+|++++.+++++ ||++|||+||+ ++..|+ ++ +..+++|+++.+++ +.+++++
T Consensus 271 ~~~K~l~ig~ls~f~~~HsV~r~~~~~l~~-dR~~FEV~~Ys-~~~~D~-~t---r~~~d~f~~l~~~s~~~~~~~ia~~ 344 (631)
T 3q3e_A 271 RNNKPVMVVLLEHFHSAHSIYRTHSTSMIA-AREHFYLIGLG-SPSVDQ-AG---QEVFDEFHLVAGDNMKQKLEFIRSV 344 (631)
T ss_dssp ETTEEEEEEECSSCCTTSHHHHHHHHHHHH-HTTTSEEEEEE-CTTSCH-HH---HTTSSEEEECCCSSHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCcccCCCcHHHHHHHHHHh-hhhcEEEEEEe-CCCCCH-HH---HhcCcEEEECCCCCccccHHHHHHH
Confidence 467899999999999999999999999998 89999999999 665433 44 67889999999998 7899999
Q ss_pred HHhCCCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCccCCCccceeecCCccccCC
Q 002431 608 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVND 687 (922)
Q Consensus 608 i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~ 687 (922)
|++|+|||||||+|||.+.++.++++|||||||+|+|||+|||+++|||+|+|.+..| .+.+|+|++++||+++++++
T Consensus 345 Ir~d~IDILVdL~g~t~~~~i~~aa~RpAPVQvs~lGyp~TTGl~~iDY~i~D~~~~~--~~~~ysEklirLP~~~~~~~ 422 (631)
T 3q3e_A 345 CESNGAAIFYMPSIGMDMTTIFASNTRLAPIQAIALGHPATTHSDFIEYVIVEDDYVG--SEECFSETLLRLPKDALPYV 422 (631)
T ss_dssp HHHHTCSEEEESCCSSSHHHHHHTTSCCSSEEEEECSSCSCCCCTTCCEEEEEGGGCC--CGGGCSSEEEEECTTSSCCC
T ss_pred HHhcCCCEEEECCCCCCchhHHHHhCCCchheEeccCCCcccCcccCCEEEeCCCCCC--cccCceeeEEECCCCccccC
Confidence 9999999999999999877777778999999999999999999999999999998765 47899999999999999987
Q ss_pred CccccccCCCCCCCCCcCCCCCCCC--cEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEE--ecCChhhHHHHHHHHH
Q 002431 688 YKQKNMDVLDPNCQPKRSDYGLPED--KFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWL--LRFPAAGEMRLRAYAV 763 (922)
Q Consensus 688 ~~~~~~~~~~~~~~~~r~~~~l~~~--~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~--~~~~~~~~~~l~~~~~ 763 (922)
++.. .+.|..+|+|++ .+||||||++.|++|.++++|++|++++|+++||+ +|.++.....+.+.+.
T Consensus 423 p~~~---------~p~r~~~~lp~~~G~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~~~~~~~~~~ 493 (631)
T 3q3e_A 423 PSAL---------APEKVDYLLRENPEVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHPYVERFI 493 (631)
T ss_dssp CCTT---------CCSSCCCCCCSCCSEEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGGGHHHHHHHH
T ss_pred Cccc---------CCccccccCCcCCCeEEEEECCccccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchhhHHHHHHHH
Confidence 5421 235778899975 89999999999999999999999999999999864 4643333455556678
Q ss_pred HcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc
Q 002431 764 AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV 843 (922)
Q Consensus 764 ~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~ 843 (922)
+.||+ +||+|.|.++..+|++.|+.+|||||||||+||+|++|||||||||||++|+++++|+|+|+|..+|++|++|+
T Consensus 494 ~~GI~-~Rv~F~g~~p~~e~la~y~~aDIfLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA 572 (631)
T 3q3e_A 494 KSYLG-DSATAHPHSPYHQYLRILHNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIA 572 (631)
T ss_dssp HHHHG-GGEEEECCCCHHHHHHHHHTCSEEECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEE
T ss_pred HcCCC-ccEEEcCCCCHHHHHHHHhcCcEEEeCCcccCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceec
Confidence 89995 89999999999999999999999999999999999999999999999999999999999999999999993399
Q ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHhcC
Q 002431 844 NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHCSG 903 (922)
Q Consensus 844 ~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~~~ 903 (922)
+|+++|+++|++|++|++.|+++|+++++++.++++|| ..++++|+.|+++|++|.+.
T Consensus 573 ~d~eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd--~~~~~~e~~ye~~~~~w~~~ 630 (631)
T 3q3e_A 573 NTVDEYVERAVRLAENHQERLELRRYIIENNGLNTLFT--GDPRPMGQVFLEKLNAFLKE 630 (631)
T ss_dssp SSHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTC--SCCTHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhCCCcc--hhHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998899999 78999999999999999753
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-65 Score=594.96 Aligned_cols=558 Identities=28% Similarity=0.410 Sum_probs=465.2
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHH
Q 002431 283 VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYN 362 (922)
Q Consensus 283 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 362 (922)
.|++++|++.++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|++.|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46788899999999988999899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCC
Q 002431 363 EVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS---GHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 363 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~ 439 (922)
++++.+|++..++..+|.++...|++++|++.|+++++.+|++..++..++.++... |++++|.+.|+++++.+|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred HHHHHHHHHhhcccCChhhHhHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCHHHHHHHHHHHHhhhhhhhhccCCCC
Q 002431 440 PEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPP 519 (922)
Q Consensus 440 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (922)
...+..+. ..++......++.|....- ..+
T Consensus 162 ~~~~~~l~-------------------------------------------~~~~~~~~~~~~~~~~~~~------~~~- 191 (568)
T 2vsy_A 162 VEPFAFLS-------------------------------------------EDASAAEQLACARTRAQAI------AAS- 191 (568)
T ss_dssp SCHHHHTT-------------------------------------------SCCCHHHHHHHHHHHHHHH------HTT-
T ss_pred cChHHHhC-------------------------------------------CCCHHHHHHHHHHHHHhcc------Ccc-
Confidence 77665543 0112223333444433211 000
Q ss_pred CCCCCCCccccCCCcccceeeeecCCCCCChhHhhhhHHhhc--CCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC
Q 002431 520 FNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGM--HNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS 597 (922)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~rig~~s~~~~~h~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (922)
..|. +.....+.++||||+++++|..|++++++.+++++ +++.+|||++|+.++...+.+.++++..+ .|+.+.
T Consensus 192 -~~~~--~~~~~~~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 267 (568)
T 2vsy_A 192 -VRPL--APTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQAS-TLHDVT 267 (568)
T ss_dssp -CCCC--CCCCCCSSSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCHHHHHHHHTS-EEEECT
T ss_pred -cCCC--CCCCCCCCCCeEEEEECcccccChHHHHHHHHHhhccCCcccEEEEEEECCCCCccHHHHHHHhcC-eEEECC
Confidence 0011 11122457899999999999999999999999999 99999999999986543345677788877 888888
Q ss_pred CCCHHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCccCCCcccee
Q 002431 598 AMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLV 677 (922)
Q Consensus 598 ~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~~~e~~~ 677 (922)
.++...+.+.|+++++||||++++|++++++.+++.+++|+|++|+|||.++|++.+||+++|.++++++....|.|++.
T Consensus 268 ~~~~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~i~ 347 (568)
T 2vsy_A 268 ALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVL 347 (568)
T ss_dssp TCCHHHHHHHHHHTTCSEEEECSSCTTCSSCHHHHTCCSSEEEEESSSSSCCCCTTCCEEEECTTTSCTTTGGGCSSEEE
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCCCCcchHHHHhcCCCceeEeeecCCcccCCCCceEEEECCCcCCcccccCCcceeE
Confidence 88889999999999999999999999999999999999999999999999999999999999999999988777889999
Q ss_pred ecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEec-CChhhHH
Q 002431 678 HVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLR-FPAAGEM 756 (922)
Q Consensus 678 ~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~-~~~~~~~ 756 (922)
.+|+.+.... . .++....+.|+++|++++.++|++.....|+++.++++|.+|+++.|+++|+|+| +|+. .+
T Consensus 348 ~ipn~~~~~~---~---~~~~~~~~~r~~~~~~~~~~v~~~g~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~g~~-~~ 420 (568)
T 2vsy_A 348 RLQGAFQPSD---T---SRVVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEA-DA 420 (568)
T ss_dssp ECSSCSCCCC---T---TCCCCCCCCTGGGTCCTTSCEEEECCCGGGCCHHHHHHHHHHHHHCTTCEEEEECCSTTH-HH
T ss_pred cCCCcCCCCC---C---CCCCCCCCCccccCCCCCCEEEEeCCccccCCHHHHHHHHHHHHhCCCcEEEEecCCHHH-HH
Confidence 9998432211 0 0112234579999999988887665544499999999999999999999999999 7765 88
Q ss_pred HHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcC
Q 002431 757 RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATG 836 (922)
Q Consensus 757 ~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g 836 (922)
.+++.+.++|++.++|+|+|.++..++..+|+.+||||+||++++|+|++|||+||+|||+++|..+.+++|++++..+|
T Consensus 421 ~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g 500 (568)
T 2vsy_A 421 RLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLG 500 (568)
T ss_dssp HHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHT
T ss_pred HHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCC
Confidence 99999999999448999999999999999999999999999995599999999999999999999999999999999999
Q ss_pred CCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHhc
Q 002431 837 LGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHCS 902 (922)
Q Consensus 837 ~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~~ 902 (922)
++| +|.+|+++|++++.+|++|++.+..++++.+++......|+++.++++++++|+++|++||.
T Consensus 501 ~~e-~v~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~~~~~ 565 (568)
T 2vsy_A 501 LDE-MNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALARRHGW 565 (568)
T ss_dssp CGG-GBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHTTTC
T ss_pred Chh-hhcCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999 99999999999999999999999999999998763346799999999999999999999986
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=405.41 Aligned_cols=447 Identities=17% Similarity=0.164 Sum_probs=409.1
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
+..++..+.+.|++++|+..|++++...|+ ...++.++.++...|++++|+..|++++.. |.++.++..++.+|.+.|
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHh
Confidence 356788899999999999999999988885 477889999999999999999999998765 677899999999999999
Q ss_pred CHHHHHHHHHHHHhcC----------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--
Q 002431 82 DIDLAIRYYLVAIELR----------------PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGN-- 143 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~-- 143 (922)
++++|++.|++..... +.+..+|+.++.+|.+.|++++|++.|+++++.+|++..++..++.
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 244 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNH 244 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhh
Confidence 9999999998643322 2348899999999999999999999999999999999988776644
Q ss_pred ------------------------------------HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHH
Q 002431 144 ------------------------------------LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187 (922)
Q Consensus 144 ------------------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 187 (922)
.+.+.|++++|+..|+++++. |.+..++..++.++.+.|++++
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp CSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHH
T ss_pred cccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHH
Confidence 334678899999999998887 7888999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcC
Q 002431 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCD 266 (922)
Q Consensus 188 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 266 (922)
|+..|+++++.+|++..++..++.++...|++++|...++++++..|+ ..++..++.+|.+.|++++|++.|+++++.+
T Consensus 324 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 403 (597)
T 2xpi_A 324 VLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD 403 (597)
T ss_dssp HHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999998887 8889999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHH
Q 002431 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAV 346 (922)
Q Consensus 267 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 346 (922)
|.+..+|..++.++...|++++|++.|+++++..|++..++..++.+|.+.|++++|...|+++++..|.++.+|..++.
T Consensus 404 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 483 (597)
T 2xpi_A 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGV 483 (597)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHcc------CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Q 002431 347 IYKQQGNYADAISCYNEVLRI------DPLA-ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419 (922)
Q Consensus 347 ~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 419 (922)
++.+.|++++|++.|+++++. +|++ ..++..+|.++.+.|++++|++.|+++++.+|+++.++..++.+|.+.
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK 563 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 999999999999999999987 5554 789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhc
Q 002431 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451 (922)
Q Consensus 420 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 451 (922)
|++++|.+.|+++++++|+++.++..+...+.
T Consensus 564 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 564 KIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999999999999999988887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=377.20 Aligned_cols=383 Identities=42% Similarity=0.677 Sum_probs=276.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
+.+|..+++.|++++|+..++++++.+|++..++..++.++...|++++|...++++++.+|.++.++..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 56788889999999999999999888898888888899999999999999999998888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (922)
+++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHh
Q 002431 163 RIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGN 241 (922)
Q Consensus 163 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 241 (922)
+.+|++..++..++.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...|+ ..++..
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHH
Confidence 8888888888888888888888888888888888888887777777777777777777777777766666665 555555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChh
Q 002431 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP 321 (922)
Q Consensus 242 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 321 (922)
++.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++..|+++.++..++.++...|+++
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666666555555555555555555555555555555555555555555555555555554444444
Q ss_pred HHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 002431 322 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385 (922)
Q Consensus 322 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 385 (922)
+|+..|+++++..|++..++..+|.++.+.|++++|+..|+++++.+|+++.+++.+|.++..+
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 4444444444444444444444444444444444444444444444444444444444444433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=373.18 Aligned_cols=382 Identities=30% Similarity=0.424 Sum_probs=281.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118 (922)
Q Consensus 39 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 118 (922)
+|..+++.|++++|+..++++++.+|++..++..++.++...|++++|...++++++.+|.++.++..+|.++...|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 56677777888888888877777777777777777777777788888887777777777777777777777777778888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002431 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198 (922)
Q Consensus 119 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (922)
+|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|++.|+++++.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 88877777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002431 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLG 277 (922)
Q Consensus 199 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 277 (922)
+|++..++..+|.++...|++++|+..|+++++.+|+ ..++..++.++...|++++|+..+++++..+|++..++..+|
T Consensus 165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 244 (388)
T 1w3b_A 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence 7777777777777777777777777777777777766 666667777777777777777777777777777766777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHH
Q 002431 278 NALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 357 (922)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 357 (922)
.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|++..++..++.++...|++++|
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777777777776666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 002431 358 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (922)
Q Consensus 358 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (922)
+..++++++.+|++..++..+|.++.+.|++++|+..|+++++.+|++..+++.+|.++..+|
T Consensus 325 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 666666666666666666666666666666666666666666666666666666666666555
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-40 Score=385.58 Aligned_cols=436 Identities=16% Similarity=0.103 Sum_probs=406.9
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002431 31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110 (922)
Q Consensus 31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 110 (922)
.+...+..++..+.+.|++++|+..|++++...|+. ..++.++.++...|++++|+..|++++.. |.++.++..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence 467788999999999999999999999999988855 77889999999999999999999998765 5678899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 002431 111 YMRKGRLNEAAQCCRQALALN----------------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 174 (922)
Q Consensus 111 ~~~~g~~~~A~~~~~~~l~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 174 (922)
|.+.|++++|++.|++..... +.+..++..++.++.+.|++++|+..|+++++.+|++..++..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 999999999999999633222 2247899999999999999999999999999999999888776
Q ss_pred HHH--------------------------------------HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002431 175 LAG--------------------------------------LFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 216 (922)
Q Consensus 175 la~--------------------------------------~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 216 (922)
++. .|.+.|++++|++.|+++++. |.+..++..++.++.+.
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHh
Confidence 643 344678999999999999887 67899999999999999
Q ss_pred CChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 217 GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295 (922)
Q Consensus 217 g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (922)
|++++|+..|+++++..|+ ..++..++.++...|++++|+..++++++..|++..++..++.++.+.|++++|++.|++
T Consensus 319 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999999887 888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 002431 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 375 (922)
Q Consensus 296 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 375 (922)
+++..|.+..++..++.+|.+.|++++|+..|+++++..|++..++..++.+|.+.|++++|++.|+++++..|.++.++
T Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 478 (597)
T 2xpi_A 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL 478 (597)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhh------CCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002431 376 VNRGNTYKEIGRVTDAIQDYIRAITI------RPTM-AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLH 448 (922)
Q Consensus 376 ~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 448 (922)
..+|.++.+.|++++|++.|+++++. +|++ ..++..++.+|.+.|++++|++.|+++++.+|+++.++..++.
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 558 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIAL 558 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999999998 6665 7899999999999999999999999999999999999999999
Q ss_pred hhcccCChhhHhHHHHHHHHH
Q 002431 449 TLQCVCSWEDRDRMFSEVEGI 469 (922)
Q Consensus 449 ~~~~~~~~~~a~~~~~~~~~~ 469 (922)
.+...|+|++|...++++.++
T Consensus 559 ~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 559 VYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999888774
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=352.32 Aligned_cols=412 Identities=17% Similarity=0.222 Sum_probs=307.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
+..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++.+|++..++..+|.++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHH----------------------------------HHHHHHHHcCCHHHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHS----------------------------------NLGNLMKAQGLVQEAYSCY 158 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~----------------------------------~la~~~~~~g~~~~A~~~~ 158 (922)
..|++++|+..|+ .+..+|+....+. .....+....+.+.+...+
T Consensus 105 ~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 5555555555553 4444433332221 1112222333333333333
Q ss_pred HHHHhhCCCcHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCChHHHH
Q 002431 159 LEALRIQPTFAIAWSNLAGLFM--------ESGDLNRALQYYKEAVKLKPTFPD-------AYLNLGNVYKALGMPQEAI 223 (922)
Q Consensus 159 ~~al~~~p~~~~~~~~la~~~~--------~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~l~~~~~~~g~~~~A~ 223 (922)
.+.....+........+...+. ..|++++|+..++++++.+|+++. ++..+|.++...|++++|+
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3333333333334444443332 335899999999999999999865 5778889999999999999
Q ss_pred HHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002431 224 MCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303 (922)
Q Consensus 224 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (922)
..++++++..|+...+..++.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|++
T Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 343 (537)
T 3fp2_A 264 VLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343 (537)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHH------HHHH
Q 002431 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD------GLVN 377 (922)
Q Consensus 304 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~ 377 (922)
..++..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..|+++++..|.+.. .+..
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998765433 4677
Q ss_pred HHHHHHHh----------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002431 378 RGNTYKEI----------GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCN 445 (922)
Q Consensus 378 l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 445 (922)
+|.++... |++++|+..|+++++.+|++..++..+|.+|...|++++|++.|+++++++|+++.....
T Consensus 424 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 78999999 999999999999999999999999999999999999999999999999999999877543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=345.89 Aligned_cols=442 Identities=14% Similarity=0.128 Sum_probs=329.5
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
++.+|..+++.|+|++|+..|+++++.+| ++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666666665 45666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH---HHHHHHhCCCCHHHHHHHHHHH--HHcCCHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC---CRQALALNPLLVDAHSNLGNLM--KAQGLVQEAYS 156 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~---~~~~l~~~p~~~~~~~~la~~~--~~~g~~~~A~~ 156 (922)
++++|+..|+++++..|.+......+...+........+.+. ++.+... |+........+... ........ ..
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~ 165 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT-PTELSTQPAKERKDKQENLPSVTS-MA 165 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCCHHH-HH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccCChhhHHHhhccCCchhHH-HH
Confidence 666666666666666554433332222222222111111111 1111110 10000000000000 00000000 00
Q ss_pred HHHHHHhh--------CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----c--CC-------CCHHHHHHHHH
Q 002431 157 CYLEALRI--------QPTFAIAWSNLAGLFME---SGDLNRALQYYKEAVK-----L--KP-------TFPDAYLNLGN 211 (922)
Q Consensus 157 ~~~~al~~--------~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~-----~--~p-------~~~~~~~~l~~ 211 (922)
.+...... .|++...+..++..+.. .|++++|+..++++++ . .| .+..++..+|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 01000110 15557888888888886 8999999999999988 5 43 34568889999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 212 VYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 291 (922)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 291 (922)
++...|++++|+..++++++..|+...+..++.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+.
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999988878889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 002431 292 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371 (922)
Q Consensus 292 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 371 (922)
.++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 326 DFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HH------HHHHHHHHHHH---hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 372 AD------GLVNRGNTYKE---IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 372 ~~------~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
.. ++..+|.++.. .|++++|+..++++++.+|++..++..+|.+|...|++++|...|+++++++|+++.+
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 54 99999999999 9999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHH
Q 002431 443 TCNL 446 (922)
Q Consensus 443 ~~~l 446 (922)
+..+
T Consensus 486 ~~~~ 489 (514)
T 2gw1_A 486 LQAI 489 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=341.72 Aligned_cols=409 Identities=14% Similarity=0.111 Sum_probs=334.3
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
++.+|.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++..|.+..........+....
T Consensus 42 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (514)
T 2gw1_A 42 YSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQ 121 (514)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999876555444443333332
Q ss_pred CHHH---HHHHHHHHHhcCCCcHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH-
Q 002431 82 DIDL---AIRYYLVAIELRPNFADAWSNLASA--YMRKGRLNEAAQCCRQALAL--------NPLLVDAHSNLGNLMKA- 147 (922)
Q Consensus 82 ~~~~---A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~- 147 (922)
.... ++..++.+... |+........+.. .......... ..+...... .|++...+..++..+..
T Consensus 122 ~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (514)
T 2gw1_A 122 AMSKLKEKFGDIDTATAT-PTELSTQPAKERKDKQENLPSVTSM-ASFFGIFKPELTFANYDESNEADKELMNGLSNLYK 199 (514)
T ss_dssp HHHHHTTC----------------------------CCCCHHHH-HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHh-hhhccCChhhHHHhhccCCchhHHH-HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 2222 22223333211 1111111110000 0000111111 111111111 14457888888888876
Q ss_pred --cCCHHHHHHHHHHHHh-----h--C-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002431 148 --QGLVQEAYSCYLEALR-----I--Q-------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGN 211 (922)
Q Consensus 148 --~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 211 (922)
.|++++|+..|+++++ . . |.+..++..+|.++...|++++|+..++++++..|. ..++..++.
T Consensus 200 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~ 278 (514)
T 2gw1_A 200 RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMAL 278 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHH
Confidence 8999999999999988 4 3 555778999999999999999999999999999999 999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 212 VYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 290 (922)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 290 (922)
++...|++++|+..+++++...|+ ..++..++.++...|++++|+..+++++...|.+..++..+|.++...|++++|+
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999887 8889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCch------hhhhHHHHHHH---cCCHHHHHHHH
Q 002431 291 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA------PFNNLAVIYKQ---QGNYADAISCY 361 (922)
Q Consensus 291 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~la~~~~~---~g~~~~A~~~~ 361 (922)
..++++++..|+++.++..+|.++...|++++|...|++++...|.+.. ++..+|.++.. .|++++|+..+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 359 TLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888765 89999999999 99999999999
Q ss_pred HHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 002431 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 413 (922)
Q Consensus 362 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 413 (922)
+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+.
T Consensus 439 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877663
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=342.24 Aligned_cols=399 Identities=18% Similarity=0.208 Sum_probs=347.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002431 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145 (922)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 145 (922)
.+..+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----------------------
Q 002431 146 KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP---------------------- 203 (922)
Q Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---------------------- 203 (922)
...|++++|+..|+ ++...|+....+ ...+...+...+|+..+++++...|...
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999995 888877765543 2344555666788888888876533211
Q ss_pred ---------------HHHHHHHHH--------HHHcCChHHHHHHHHHHHhhCCC--------hhHHHhHHHHHHHcCCh
Q 002431 204 ---------------DAYLNLGNV--------YKALGMPQEAIMCYQRAVQTRPN--------AIAFGNLASTYYERGQA 252 (922)
Q Consensus 204 ---------------~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~l~~~~~~~g~~ 252 (922)
.....+... ....|++++|+..++++++..|+ ..++..++.++...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 122222222 23345899999999999999987 33678889999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHh
Q 002431 253 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 332 (922)
Q Consensus 253 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 332 (922)
++|+..+++++..+|+ ..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++
T Consensus 260 ~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 260 LDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH------
Q 002431 333 VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA------ 406 (922)
Q Consensus 333 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------ 406 (922)
..|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++..|++.
T Consensus 339 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 339 LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred HHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHH
Q 002431 407 EAHANLASAYKDS----------GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 469 (922)
Q Consensus 407 ~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 469 (922)
..+..++.++... |++++|+..|+++++.+|+++.++..++..+...|++++|...++++.++
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3466778899998 99999999999999999999999999999999999999999999988875
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=315.60 Aligned_cols=346 Identities=16% Similarity=0.181 Sum_probs=214.4
Q ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 14 SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVA 93 (922)
Q Consensus 14 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 93 (922)
....+...+.+++..+|.++..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++
T Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34456667777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 002431 94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV---DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI 170 (922)
Q Consensus 94 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 170 (922)
++.+|++..++..+|.++...|++++|+..|+++++.+|++. .++..++.++.. .
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------~ 144 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM----------------------Q 144 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----------------------H
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----------------------H
Confidence 888888888888888888888888888888888888888777 666655444211 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHc
Q 002431 171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYER 249 (922)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 249 (922)
.+..++..+...|++++|+..++++++..|.+..++..++.++...|++++|+..|+++++..|+ ..++..++.++...
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 12233444555555555555555555555555555555555555555555555555555554444 44555555555555
Q ss_pred CChHHHHHHHHHHHhcCCCcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCChH----HHHhHHHH
Q 002431 250 GQADMAILYYKQAIGCDPRFLEAYNNL------------GNALKDVGRVDEAIQCYNQCLSLQPSHPQ----ALTNLGNI 313 (922)
Q Consensus 250 g~~~~A~~~~~~~l~~~p~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~ 313 (922)
|++++|+..++++++..|++...+..+ +.++...|++++|+..|+++++..|+++. .+..+|.+
T Consensus 225 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHC 304 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 555555555555555555554444333 66666666666666666666666666533 45555566
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 002431 314 YMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT 381 (922)
Q Consensus 314 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 381 (922)
+.+.|++++|+..++++++..|++..++..+|.++...|++++|+..|+++++++|+++.++..++.+
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 66666666666666666555555555566666666666666666666666666666655555555543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=315.41 Aligned_cols=325 Identities=15% Similarity=0.196 Sum_probs=243.1
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
++.+|..+++.|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 108 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG 108 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFA---DAWSNL------------ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 146 (922)
++++|+..|+++++.+|++. .++..+ |.++...|++++|+..|+++++..|.+..++..+|.++.
T Consensus 109 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI 188 (450)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 99999999999999999988 777666 445777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002431 147 AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY 226 (922)
Q Consensus 147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 226 (922)
..|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++...|++...+..+..+..
T Consensus 189 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~------------ 256 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK------------ 256 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------------
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH------------
Confidence 77777777777777777777777777777777777777777777777777777777666554421100
Q ss_pred HHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002431 227 QRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL----EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302 (922)
Q Consensus 227 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 302 (922)
......++.++...|++++|+..|+++++..|++. ..+..+|.++...|++++|+..++++++..|+
T Consensus 257 ---------~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 327 (450)
T 2y4t_A 257 ---------LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD 327 (450)
T ss_dssp ---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 01112235555555666666666666655555542 24555566666666666666666666666666
Q ss_pred ChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHH
Q 002431 303 HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 347 (922)
Q Consensus 303 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 347 (922)
++.++..+|.++...|++++|...|+++++..|++..++..++.+
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 666666666666666666666666666666666666555555544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-30 Score=283.07 Aligned_cols=341 Identities=18% Similarity=0.163 Sum_probs=235.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002431 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145 (922)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 145 (922)
++..++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 35566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q 002431 146 KAQGLVQEAYSCYLEALRIQP---TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEA 222 (922)
Q Consensus 146 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A 222 (922)
...|++++|+..|+++++..| ++..++..++.++. ...+..++.++...|++++|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE----------------------MQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH----------------------HHHHHHHHHHHHHccCHHHH
Confidence 777777777777777766666 55555555554322 11233445556666666666
Q ss_pred HHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002431 223 IMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301 (922)
Q Consensus 223 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 301 (922)
+..++++++..|+ ..++..++.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 140 ITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 6666666665554 555555566666666666666666666655555555555666666666666666666666655555
Q ss_pred CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHH----HHHH
Q 002431 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD----GLVN 377 (922)
Q Consensus 302 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~ 377 (922)
++..++..+..+. .......+|.++...|++++|+..++++++..|+++. ++..
T Consensus 220 ~~~~~~~~~~~~~----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 220 DHKRCFAHYKQVK----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKER 277 (359)
T ss_dssp TCHHHHHHHHHHH----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHH----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 5555433322211 0111234578888999999999999999999888874 4667
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhh
Q 002431 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450 (922)
Q Consensus 378 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 450 (922)
+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|...|+++++++|+++.++..+....
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999988877765544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-30 Score=283.74 Aligned_cols=345 Identities=17% Similarity=0.209 Sum_probs=290.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 111 (922)
+++.++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH
Q 002431 112 MRKGRLNEAAQCCRQALALNP---LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRA 188 (922)
Q Consensus 112 ~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 188 (922)
...|++++|+..|+++++.+| ++..++..++.+... ..+..++.++...|++++|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM----------------------QRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHTTCHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH----------------------HHHHHHHHHHHHccCHHHH
Confidence 999999999999999999999 888888888776431 2356788899999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCC
Q 002431 189 LQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDP 267 (922)
Q Consensus 189 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 267 (922)
+..++++++..|.++.++..++.++...|++++|+..++++++..|+ ...+..++.++...|++++|+..++++++..|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 140 ITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999987 88999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCch----hhhh
Q 002431 268 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA----PFNN 343 (922)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~ 343 (922)
++..++..+..+. .......+|.++...|++++|+..++++++..|++.. .+..
T Consensus 220 ~~~~~~~~~~~~~----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 220 DHKRCFAHYKQVK----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKER 277 (359)
T ss_dssp TCHHHHHHHHHHH----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHH----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 9987655442221 1122333455555555555555555555555555442 2455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 002431 344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (922)
Q Consensus 344 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (922)
+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.++...+
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 77777778888888888888888888888888888888888888888888888888888888777777777766543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-31 Score=299.30 Aligned_cols=389 Identities=15% Similarity=0.077 Sum_probs=272.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRL---------EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL------- 96 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 96 (922)
...+..+|.++..+|++++|++.|++++++ +|....++..+|.+|..+|++++|+.+|++++++
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 556777888888888888888888888764 4556677778888888888888888888887765
Q ss_pred -CCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCcHH
Q 002431 97 -RPNFADAWSNLASAYMRK--GRLNEAAQCCRQALALNPLLVDAHSNLGNLMK---AQGLVQEAYSCYLEALRIQPTFAI 170 (922)
Q Consensus 97 -~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~ 170 (922)
.+..+.++..+|.++... +++++|+..|+++++.+|+++.++..++.++. ..++.++|++.++++++++|++..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 234566777777666554 46788888888888888888887777776644 346667788888888888888877
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHH
Q 002431 171 AWSNLAGLFMES----GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLAST 245 (922)
Q Consensus 171 ~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~ 245 (922)
++..++..+... +++++|.+.+++++..+|....++..+|.++...|++++|+..++++++..|+ ..++..+|.+
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 777777655443 56677888888888888888888888888888888888888888888887777 6677777777
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHH
Q 002431 246 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 325 (922)
Q Consensus 246 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 325 (922)
|...+....+.. ....+......+.+++|+..++++++.+|.+..++..+|.++...|++++|+.
T Consensus 291 y~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 291 YRAKVFQVMNLR---------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp HHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhhhHH---------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHH
Confidence 654322111110 01111122223457889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCch---hhhhHHHH-HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 002431 326 YYKATLAVTTGLSA---PFNNLAVI-YKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401 (922)
Q Consensus 326 ~~~~a~~~~~~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 401 (922)
.|+++++..+++.. .+..++.+ +...|++++|+..|+++++++|.+..... ....+.+.++++++.
T Consensus 356 ~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 356 YFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSK 425 (472)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHh
Confidence 99999998877543 35566654 45789999999999999999998865332 234556778899999
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002431 402 RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (922)
Q Consensus 402 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (922)
+|+++.++..||.+|...|++++|+++|+++++++|.+|.+...+
T Consensus 426 ~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 426 NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp CC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999999999999999998877654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-30 Score=296.83 Aligned_cols=389 Identities=14% Similarity=0.034 Sum_probs=302.3
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhh---------CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------C
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYER---------NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE--------P 64 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p 64 (922)
+..+|.++...|++++|++.|+++++. +|....++..+|.+|..+|++++|+..+++++++. +
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~ 133 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI 133 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch
Confidence 456899999999999999999999864 46667889999999999999999999999998763 3
Q ss_pred CcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002431 65 RFAECYGNMANAWKEK--GDIDLAIRYYLVAIELRPNFADAWSNLASAYMR---KGRLNEAAQCCRQALALNPLLVDAHS 139 (922)
Q Consensus 65 ~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~ 139 (922)
..+.++..+|.++... +++++|+.+|+++++.+|+++.++..++.++.. .++.++|++.++++++.+|++..++.
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~ 213 (472)
T 4g1t_A 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKV 213 (472)
T ss_dssp CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHH
Confidence 4578888888887765 479999999999999999999999999888654 57888999999999999999999998
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002431 140 NLGNLMKA----QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA 215 (922)
Q Consensus 140 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 215 (922)
.++..+.. .+++++|...+++++..+|.+..++..+|.+|...|++++|+..++++++.+|++..++..+|.+|..
T Consensus 214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 214 LLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293 (472)
T ss_dssp HHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 88877665 46788999999999999999999999999999999999999999999999999999999999998865
Q ss_pred cCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 216 LGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295 (922)
Q Consensus 216 ~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (922)
.+....+.. ....+......+.+++|+..++++++.+|....++..+|.++...|++++|+.+|++
T Consensus 294 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 294 KVFQVMNLR--------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp HHHHHHHC--------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhHH--------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 432221111 111112222334578899999999999999999999999999999999999999999
Q ss_pred HHhhCCCChH---HHHhHHHH-HHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 002431 296 CLSLQPSHPQ---ALTNLGNI-YMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371 (922)
Q Consensus 296 al~~~p~~~~---~~~~la~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 371 (922)
+++..+++.. ++..++.+ +...|++++|+..|++++++.|.+.... +....+.++++++++.+|.+
T Consensus 360 aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~----------~~~~~l~~~~~~~l~~~p~~ 429 (472)
T 4g1t_A 360 EFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE----------KMKDKLQKIAKMRLSKNGAD 429 (472)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH----------HHHHHHHHHHHHHHHHCC-C
T ss_pred HHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH----------HHHHHHHHHHHHHHHhCCCC
Confidence 9998877643 45566654 4578999999999999999998865432 23455677888999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 002431 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414 (922)
Q Consensus 372 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 414 (922)
+.++..+|.++...|++++|+++|+++++.+|.++.+...+|.
T Consensus 430 ~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 430 SEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp TTHHHHHHHHHHHHHHCC-------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 9999999999999999999999999999999999888877763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-26 Score=265.27 Aligned_cols=378 Identities=16% Similarity=0.121 Sum_probs=237.4
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHH
Q 002431 19 LEHSNSVYERNPLRTDNLLLLGAIYYQ----LHDYDMCIARNEEALRLEPRFAECYGNMANAWKE----KGDIDLAIRYY 90 (922)
Q Consensus 19 ~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~ 90 (922)
+..++++.+ +.++.+++.+|.+|.. .+++++|+..|+++.+. .++.+++.+|.+|.. .+++++|+.+|
T Consensus 27 ~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 27 LEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 444444433 3466777777777776 67777777777777664 456677777777777 77777777777
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 002431 91 LVAIELRPNFADAWSNLASAYMR----KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA----QGLVQEAYSCYLEAL 162 (922)
Q Consensus 91 ~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al 162 (922)
+++.+. .++.+++.+|.+|.. .+++++|+..|+++.+. .++.++..+|.+|.. .+++++|+..|+++.
T Consensus 103 ~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 103 KKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 777654 356677777777776 66777777777777654 356677777777766 666777777777766
Q ss_pred hhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC
Q 002431 163 RIQPTFAIAWSNLAGLFME----SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA----LGMPQEAIMCYQRAVQTRP 234 (922)
Q Consensus 163 ~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 234 (922)
+. .++.++..++.+|.. .+++++|+.+|+++.+. .++.++..++.+|.. .+++++|+.+|+++.+. .
T Consensus 179 ~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~ 253 (490)
T 2xm6_A 179 EQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-G 253 (490)
T ss_dssp HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-T
T ss_pred HC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C
Confidence 54 456666677777666 66777777777766654 345666666666665 56666666666666654 2
Q ss_pred ChhHHHhHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCChH
Q 002431 235 NAIAFGNLASTYYE----RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV-----GRVDEAIQCYNQCLSLQPSHPQ 305 (922)
Q Consensus 235 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~p~~~~ 305 (922)
+..++..++.++.. .+++++|+.+|+++.+. .+..+++.+|.++... +++++|+..|+++.+. .++.
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~ 329 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDAT 329 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHH
Confidence 35556666666666 66666666666666543 3455666666666665 6666666666666654 3455
Q ss_pred HHHhHHHHHHHcC---ChhHHHHHHHHHHhcCCCCchhhhhHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 002431 306 ALTNLGNIYMEWN---MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ----QGNYADAISCYNEVLRIDPLAADGLVNR 378 (922)
Q Consensus 306 ~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 378 (922)
+++.+|.+|...| ++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L 405 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 6666666665544 555666666666554 345556666666655 55666666666665553 245556666
Q ss_pred HHHHHH----hCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHH
Q 002431 379 GNTYKE----IGRVTDAIQDYIRAITIRPT---MAEAHANLASAYK 417 (922)
Q Consensus 379 ~~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~ 417 (922)
|.+|.. .+++++|..+|+++++.+|+ ++.+...++.++.
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 666665 55666666666666665532 5555555555444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-27 Score=274.46 Aligned_cols=428 Identities=11% Similarity=0.048 Sum_probs=317.0
Q ss_pred HHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002431 22 SNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA 101 (922)
Q Consensus 22 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 101 (922)
|+++++.+|.+..+|..++.. ...|++++|...|+++++..|.+...|..++..+.+.|++++|...|++++...| +.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 678888999999999999984 7889999999999999999999999999999999999999999999999999999 57
Q ss_pred HHHHHHHHH-HHHcCCHHHHHH----HHHHHHHh---CCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhh
Q 002431 102 DAWSNLASA-YMRKGRLNEAAQ----CCRQALAL---NPLLVDAHSNLGNLMKA---------QGLVQEAYSCYLEALRI 164 (922)
Q Consensus 102 ~~~~~la~~-~~~~g~~~~A~~----~~~~~l~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~ 164 (922)
..|..++.. ....|++++|.+ .|++++.. +|.+...|..++..... .|++++|..+|+++++
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~- 158 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV- 158 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-
Confidence 788888754 345677777665 77777654 46677888888877765 6888899999999888
Q ss_pred CCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH------HHhh----
Q 002431 165 QPTFA--IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR------AVQT---- 232 (922)
Q Consensus 165 ~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~------~~~~---- 232 (922)
.|... ..|..........|. ..+.. .+ ....+++.+|...+.+ .++.
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~-~~~~~----~l----------------~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~ 217 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINI-HLAKK----MI----------------EDRSRDYMNARRVAKEYETVMKGLDRNAPS 217 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCH-HHHHH----HH----------------HTTHHHHHHHHHHHHHHHHHHHHCCSSSCC
T ss_pred chhhhHHHHHHHHHHHHHhhch-hHHHH----HH----------------HHhhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 45432 233332222111111 00000 00 0112344555554443 2221
Q ss_pred -CCC--------hhHHHhHHHHHHHc----CCh----HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------cCCHH-
Q 002431 233 -RPN--------AIAFGNLASTYYER----GQA----DMAILYYKQAIGCDPRFLEAYNNLGNALKD-------VGRVD- 287 (922)
Q Consensus 233 -~p~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-------~g~~~- 287 (922)
.|. ...|.......... ++. .+++..|++++..+|.+..+|..++..+.. .|+++
T Consensus 218 ~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~ 297 (530)
T 2ooe_A 218 VPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNN 297 (530)
T ss_dssp CCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhh
Confidence 222 12333333222221 222 467788888888888888888888888875 68876
Q ss_pred ------HHHHHHHHHHh-hCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCc-hhhhhHHHHHHHcCCHHHHHH
Q 002431 288 ------EAIQCYNQCLS-LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS-APFNNLAVIYKQQGNYADAIS 359 (922)
Q Consensus 288 ------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~ 359 (922)
+|...|+++++ ..|++..+|..++.++...|++++|...|+++++..|.++ .+|..++.++.+.|++++|++
T Consensus 298 a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 298 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888887 6888888888888888888888888888888888888775 578888888888888888888
Q ss_pred HHHHHHccCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 360 CYNEVLRIDPLAADGLVNRGNT-YKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 360 ~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
.|+++++..|.....+...+.+ +...|++++|...|+++++..|+++.++..++.++.+.|+.++|..+|+++++..|.
T Consensus 378 ~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 378 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 8888888888777766666655 345888888888888888888888888888888888888888888888888888776
Q ss_pred CHH----HHHHHHHhhcccCChhhHhHHHHHHHHHHHHH
Q 002431 439 FPE----ATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 473 (922)
Q Consensus 439 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 473 (922)
++. .|...+......|+.+++..+.+++.+.+.+-
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 654 67777777777788888888888888877643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-27 Score=272.57 Aligned_cols=390 Identities=14% Similarity=0.146 Sum_probs=312.0
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002431 56 NEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV 135 (922)
Q Consensus 56 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 135 (922)
++++++.+|.+..+|..++.. .+.|++++|...|+++++..|.+..+|..++..+.+.|++++|..+|++++...| +.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 678889999999999999984 7899999999999999999999999999999999999999999999999999998 67
Q ss_pred HHHHHHHHH-HHHcCCHHHHHH----HHHHHHhh---CCCcHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhc
Q 002431 136 DAHSNLGNL-MKAQGLVQEAYS----CYLEALRI---QPTFAIAWSNLAGLFME---------SGDLNRALQYYKEAVKL 198 (922)
Q Consensus 136 ~~~~~la~~-~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~l~~ 198 (922)
+.|..++.. ....|++++|.+ .|++++.. +|.+..+|...+..... .|++++|..+|+++++
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~- 158 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV- 158 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-
Confidence 788888754 445677776665 77777764 56677888888877665 6888999999999988
Q ss_pred CCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHH------HHhc-----
Q 002431 199 KPTFP--DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQ------AIGC----- 265 (922)
Q Consensus 199 ~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~------~l~~----- 265 (922)
.|... ..+..........|. ..+. ..+. ...+++.+|...+++ .++.
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~-~~~~----~~l~---------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINI-HLAK----KMIE---------------DRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCH-HHHH----HHHH---------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred chhhhHHHHHHHHHHHHHhhch-hHHH----HHHH---------------HhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 46542 222222222111111 0011 1110 123456666666654 3322
Q ss_pred CCCc-------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHhhCCCChHHHHhHHHHHHH-------cCChh--
Q 002431 266 DPRF-------LEAYNNLGNALKDV----GRV----DEAIQCYNQCLSLQPSHPQALTNLGNIYME-------WNMLP-- 321 (922)
Q Consensus 266 ~p~~-------~~~~~~l~~~~~~~----g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~~~~~-- 321 (922)
.|.. ...|.......... ++. .+++..|++++..+|.++.+|..++..+.. .|+++
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a 298 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 298 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhh
Confidence 3332 24555554433332 232 478899999999999999999999999986 79987
Q ss_pred -----HHHHHHHHHHh-cCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHHhCCHHHHHHH
Q 002431 322 -----AAASYYKATLA-VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAA-DGLVNRGNTYKEIGRVTDAIQD 394 (922)
Q Consensus 322 -----~A~~~~~~a~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~ 394 (922)
+|...|+++++ ..|++..+|..++..+...|++++|...|+++++..|.++ .+|..++.++.+.|++++|...
T Consensus 299 ~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 378 (530)
T 2ooe_A 299 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 378 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999997 7999999999999999999999999999999999999986 6999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 395 YIRAITIRPTMAEAHANLASA-YKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 395 ~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
|+++++..|.....+...+.+ +...|++++|..+|+++++..|+++.++.+++..+...|+.+++...|+++..
T Consensus 379 ~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 379 FKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 999999998887777776665 44699999999999999999999999999999999999999999999998875
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-28 Score=263.87 Aligned_cols=293 Identities=16% Similarity=0.208 Sum_probs=240.2
Q ss_pred HHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002431 22 SNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA 101 (922)
Q Consensus 22 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 101 (922)
..+.+...+.++..+..+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 34555566778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 002431 102 DAWSNLASAYMRKG-RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180 (922)
Q Consensus 102 ~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 180 (922)
.++..+|.++...| ++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|++...+..++.++.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 99999999999999 89999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---------CC-hhHHHhHHHHHHHcC
Q 002431 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR---------PN-AIAFGNLASTYYERG 250 (922)
Q Consensus 181 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------p~-~~~~~~l~~~~~~~g 250 (922)
..|++++|+..++++++..|+++.++..+|.++...|++++|+..++++++.. |. ..++..++.++...|
T Consensus 171 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998999999999999999999999998888764 22 456666666666666
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHH
Q 002431 251 QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314 (922)
Q Consensus 251 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 314 (922)
++++|+..++++++.+|++..++..+|.++...|++++|...++++++.+|+++.++..++.++
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666655
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-28 Score=263.55 Aligned_cols=282 Identities=17% Similarity=0.197 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002431 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214 (922)
Q Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 214 (922)
...+..++..+...|++++|+..|+++++.+|.+...+..++.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL 101 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HcC-ChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 215 ALG-MPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292 (922)
Q Consensus 215 ~~g-~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 292 (922)
..| ++++|+..++++++..|+ ..++..++.++...|++++|+..++++++..|+....+..+|.++...|++++|+..
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 444 344444444444443333 333344444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcC---------CCCchhhhhHHHHHHHcCCHHHHHHHHHH
Q 002431 293 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT---------TGLSAPFNNLAVIYKQQGNYADAISCYNE 363 (922)
Q Consensus 293 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 363 (922)
++++++..|+++.++..+|.++...|++++|...++++++.. |....++..+|.++...|++++|+..+++
T Consensus 182 ~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 182 FSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261 (330)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 444444444444444444444444444444444444444433 33344555555555555555555555555
Q ss_pred HHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 002431 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY 416 (922)
Q Consensus 364 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 416 (922)
+++.+|.++.++..+|.++...|++++|+..|+++++.+|++..++..++.++
T Consensus 262 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 262 ALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-26 Score=259.79 Aligned_cols=379 Identities=16% Similarity=0.137 Sum_probs=341.3
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHH
Q 002431 51 MCIARNEEALRLEPRFAECYGNMANAWKE----KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR----KGRLNEAAQ 122 (922)
Q Consensus 51 ~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 122 (922)
.++..++++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+. +++.+++.+|.+|.. .+++++|+.
T Consensus 25 ~~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 25 VNLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CCHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 34556665544 5789999999999999 99999999999999986 678999999999999 999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 002431 123 CCRQALALNPLLVDAHSNLGNLMKA----QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME----SGDLNRALQYYKE 194 (922)
Q Consensus 123 ~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 194 (922)
+|+++.+. .++.++..+|.++.. .+++++|+..|+++.+. .++.++..+|.+|.. .+++++|+++|++
T Consensus 101 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 176 (490)
T 2xm6_A 101 WYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSK 176 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 99999875 488999999999999 89999999999999875 578899999999998 8899999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCChhHHHhHHHHHHH----cCChHHHHHHHHHHHhcC
Q 002431 195 AVKLKPTFPDAYLNLGNVYKA----LGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYE----RGQADMAILYYKQAIGCD 266 (922)
Q Consensus 195 ~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~ 266 (922)
+.+. .++.++..+|.+|.. .+++++|+.+|+++.+.. +..++..++.+|.. .+++++|+.+|+++.+.
T Consensus 177 a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 252 (490)
T 2xm6_A 177 AAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG-DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ- 252 (490)
T ss_dssp HHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-
T ss_pred HHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence 9886 578999999999998 899999999999998763 57889999999997 89999999999999875
Q ss_pred CCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHc-----CChhHHHHHHHHHHhcCCCC
Q 002431 267 PRFLEAYNNLGNALKD----VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW-----NMLPAAASYYKATLAVTTGL 337 (922)
Q Consensus 267 p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~a~~~~~~~ 337 (922)
.+..+++.+|.++.. .+++++|+.+|+++.+. .++.+++.+|.+|... +++++|+.+|+++.+. .+
T Consensus 253 -~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~ 327 (490)
T 2xm6_A 253 -GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GD 327 (490)
T ss_dssp -TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TC
T ss_pred -CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CC
Confidence 567799999999999 89999999999999865 5788999999999998 9999999999999886 56
Q ss_pred chhhhhHHHHHHHcC---CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCcHHHHH
Q 002431 338 SAPFNNLAVIYKQQG---NYADAISCYNEVLRIDPLAADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPTMAEAHA 410 (922)
Q Consensus 338 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 410 (922)
+.+++.+|.+|...| ++++|+++|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+.. ++.+++
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~ 403 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQV 403 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHH
Confidence 788999999999877 899999999999987 679999999999999 899999999999999864 588999
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHhh
Q 002431 411 NLASAYKD----SGHVEAAIKSYKQALLLRPD---FPEATCNLLHTL 450 (922)
Q Consensus 411 ~la~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~ 450 (922)
.||.+|.. .+++++|..+|+++++.+|+ ++.+..++...+
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 99999999 89999999999999999955 777777766543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-28 Score=263.72 Aligned_cols=292 Identities=17% Similarity=0.213 Sum_probs=208.5
Q ss_pred HcCCHHHHHH-HHHHHHhcCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHH
Q 002431 181 ESGDLNRALQ-YYKEAVKLKPTFP----DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADM 254 (922)
Q Consensus 181 ~~g~~~~A~~-~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 254 (922)
..|++++|+. .+++++...|+++ ..++.+|..+...|++++|+..|+++++..|+ ..++..++.++...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3455666665 6665555555443 34556666666666666666666666666555 5566666666666666666
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH----------------hHHHHHHHcC
Q 002431 255 AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT----------------NLGNIYMEWN 318 (922)
Q Consensus 255 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~la~~~~~~~ 318 (922)
|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+...+. .++.++ ..|
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 195 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDS 195 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcc
Confidence 666666666666666666666666666666666666666666666666655443 455555 778
Q ss_pred ChhHHHHHHHHHHhcCCC--CchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002431 319 MLPAAASYYKATLAVTTG--LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYI 396 (922)
Q Consensus 319 ~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 396 (922)
++++|+..|+++++..|. +..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 275 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYR 275 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888888888888 677788888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------HHHHHHHHHhhcccCChhhHhHHHHH
Q 002431 397 RAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF-----------PEATCNLLHTLQCVCSWEDRDRMFSE 465 (922)
Q Consensus 397 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~ 465 (922)
++++.+|++..++..+|.+|.+.|++++|+..|++++++.|++ ..++..+..++...|+++++...+.+
T Consensus 276 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 276 RALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 8888888888888888888888888888888888888888777 77888888888888888888877777
Q ss_pred HHHHHHHH
Q 002431 466 VEGIIRRQ 473 (922)
Q Consensus 466 ~~~~~~~~ 473 (922)
..+.+++.
T Consensus 356 ~l~~~~~~ 363 (368)
T 1fch_A 356 DLSTLLTM 363 (368)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-28 Score=264.07 Aligned_cols=306 Identities=19% Similarity=0.193 Sum_probs=190.9
Q ss_pred HHHhcCCHHHHHH-HHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 42 IYYQLHDYDMCIA-RNEEALRLEPRF----AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116 (922)
Q Consensus 42 ~~~~~g~~~~A~~-~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 116 (922)
++...|++++|+. .|++++...|++ ...++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5566788889988 888888887765 35688889999999999999999999999888888889999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 117 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAV 196 (922)
Q Consensus 117 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (922)
+++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..|.+...+..++....
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG---------------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhh----------------
Confidence 9999999999998888888888889999999999999999999888888887665543211100
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 002431 197 KLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAY 273 (922)
Q Consensus 197 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 273 (922)
.......+..++.++ ..|++++|+..++++++..|+ ..++..++.++...|++++|+..+++++..+|++..++
T Consensus 178 --~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 254 (368)
T 1fch_A 178 --GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW 254 (368)
T ss_dssp ----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred --hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHH
Confidence 000001111233333 445555555555555555444 34455555555555555555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCC-----------chhhh
Q 002431 274 NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL-----------SAPFN 342 (922)
Q Consensus 274 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----------~~~~~ 342 (922)
..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|...|+++++..|++ ..+|.
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555544 45566
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHc
Q 002431 343 NLAVIYKQQGNYADAISCYNEVLR 366 (922)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~ 366 (922)
.++.++...|++++|..+++++++
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHhCChHhHHHhHHHHHH
Confidence 666666666666666655554443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=254.18 Aligned_cols=262 Identities=19% Similarity=0.219 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHc
Q 002431 171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYER 249 (922)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 249 (922)
.++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++..|+ ..++..++.++...
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT 146 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence 36666666666667777777776666666666666666666666666666666666666666665 66666666666666
Q ss_pred CChHHHHHHHHHHHhcCCCcHHHHH----------HHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHhHHHHHHHc
Q 002431 250 GQADMAILYYKQAIGCDPRFLEAYN----------NLGNALKDVGRVDEAIQCYNQCLSLQPS--HPQALTNLGNIYMEW 317 (922)
Q Consensus 250 g~~~~A~~~~~~~l~~~p~~~~~~~----------~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~ 317 (922)
|++++|+..++++++..|++...+. .++.++...|++++|+.+++++++..|. ++.++..+|.++...
T Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 6666666666666666665444433 3477777778888888888888888777 777778888888888
Q ss_pred CChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002431 318 NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397 (922)
Q Consensus 318 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 397 (922)
|++++|+..|+++++..|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++
T Consensus 227 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 306 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLT 306 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888888888888877778888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhhCCC------------cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002431 398 AITIRPT------------MAEAHANLASAYKDSGHVEAAIKSYKQA 432 (922)
Q Consensus 398 al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 432 (922)
++++.|+ +..++..++.++..+|+.+.|....++.
T Consensus 307 al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 307 ALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 8877665 2467777888888888877777666553
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-26 Score=250.40 Aligned_cols=266 Identities=20% Similarity=0.220 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002431 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146 (922)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 146 (922)
...++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34478888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHH
Q 002431 147 AQGLVQEAYSCYLEALRIQPTFAIAWSNL----------AGLFMESGDLNRALQYYKEAVKLKPT--FPDAYLNLGNVYK 214 (922)
Q Consensus 147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~ 214 (922)
..|++++|+..|+++++..|++...+..+ +.++...|++++|+..++++++..|. ++.++..+|.++.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 88888888888888888777665555444 55555555555555555555555555 4445555555555
Q ss_pred HcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 215 ALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294 (922)
Q Consensus 215 ~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 294 (922)
..|++++|+..|+ ++++..|++..++..+|.++...|++++|+..|+
T Consensus 225 ~~g~~~~A~~~~~---------------------------------~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 225 LSGEFNRAIDAFN---------------------------------AALTVRPEDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp HHTCHHHHHHHHH---------------------------------HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHH---------------------------------HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555444444 4444455555555555555555555555555555
Q ss_pred HHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCC------------CchhhhhHHHHHHHcCCHHHHHHHHH
Q 002431 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG------------LSAPFNNLAVIYKQQGNYADAISCYN 362 (922)
Q Consensus 295 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~ 362 (922)
++++..|+++.++..+|.++...|++++|...|+++++..|+ +..+|..++.++...|+.+.|....+
T Consensus 272 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 272 RALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 555555555555555555555555555555555555555443 24556666666666676666666655
Q ss_pred HHH
Q 002431 363 EVL 365 (922)
Q Consensus 363 ~al 365 (922)
+.+
T Consensus 352 ~~l 354 (365)
T 4eqf_A 352 GDL 354 (365)
T ss_dssp TCC
T ss_pred hhH
Confidence 533
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=239.39 Aligned_cols=280 Identities=16% Similarity=0.122 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002431 137 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 216 (922)
Q Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 216 (922)
.++.+|..+...|++++|+..|+++++.+|++..++..++.++...|++++|+..++++++..|++..++..++.++...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHH-HH-HHHHcCCHHHHHHHH
Q 002431 217 GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL-GN-ALKDVGRVDEAIQCY 293 (922)
Q Consensus 217 g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-~~-~~~~~g~~~~A~~~~ 293 (922)
|++++|+..++++++..|+ ...+..+... .|... ....+ +. ++...|++++|+..+
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVNLQA--------------------DVDID-DLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC-----------------------------------------CCTTSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHhHH--------------------HHHHH-HHHHHHHhHHHHHcccHHHHHHHH
Confidence 6666666666666666555 2222211000 00000 11122 33 466677788888888
Q ss_pred HHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 002431 294 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD 373 (922)
Q Consensus 294 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 373 (922)
+++++..|.++.++..+|.++...|++++|...++++++..|++..++..+|.++...|++++|+..++++++..|.+..
T Consensus 162 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 241 (327)
T 3cv0_A 162 HAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR 241 (327)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPT------------MAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 437 (922)
++..+|.++...|++++|+..++++++..|+ +..++..++.++...|++++|...++++++..|
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 8888888888888888888888888888887 778888888888888888888888877766543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-25 Score=237.26 Aligned_cols=270 Identities=21% Similarity=0.187 Sum_probs=219.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 111 (922)
+...++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 34566777888888888888888888888888888888888888888888888888888888888887778888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 002431 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNL--------------GN-LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176 (922)
Q Consensus 112 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 176 (922)
...|++++|+..++++++.+|.+...+..+ +. ++...|++++|+..++++++..|.+..++..++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 888888888888888887777766666555 55 577788888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHH
Q 002431 177 GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMA 255 (922)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 255 (922)
.++...|++++|+..++++++..|++..++..+|.++...|++++|+..++++++..|+ ..++..++.++...|++++|
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 88888888888888888888888888888888888888888888888888888888877 77888888888888888888
Q ss_pred HHHHHHHHhcCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002431 256 ILYYKQAIGCDPR------------FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301 (922)
Q Consensus 256 ~~~~~~~l~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 301 (922)
+..+++++...|+ ...++..++.++...|++++|...++++++..|
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 8888888888888 778888999999999999999998887776544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-25 Score=240.07 Aligned_cols=255 Identities=14% Similarity=0.090 Sum_probs=205.1
Q ss_pred hhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHH
Q 002431 27 ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD-IDLAIRYYLVAIELRPNFADAWS 105 (922)
Q Consensus 27 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~ 105 (922)
..+|++..++..+|.++...|++++|+..|+++++.+|++..+|+.+|.++...|+ +++|+..|+++++++|++..+|+
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~ 170 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 170 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 44566778888888888888888888888888888888888888888888888886 88888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-cCC
Q 002431 106 NLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME-SGD 184 (922)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~ 184 (922)
.+|.++...|++++|+..|+++++++|++..+|..+|.++...|++++|+..|+++++.+|++..+|+.++.++.. .|.
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888888 555
Q ss_pred HHHH-----HHHHHHHHhcCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcC------
Q 002431 185 LNRA-----LQYYKEAVKLKPTFPDAYLNLGNVYKALG--MPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERG------ 250 (922)
Q Consensus 185 ~~~A-----~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g------ 250 (922)
.++| +..+++++.++|++..+|+.++.++...| ++++|++.+.++ +..|+ ..++..++.+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 4777 47788888888888888888888888777 577777777776 66665 666777777777653
Q ss_pred ---ChHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHH
Q 002431 251 ---QADMAILYYKQA-IGCDPRFLEAYNNLGNALKD 282 (922)
Q Consensus 251 ---~~~~A~~~~~~~-l~~~p~~~~~~~~l~~~~~~ 282 (922)
.+++|+++|+++ ++.+|.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 246777777777 67777777777766666543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-25 Score=239.02 Aligned_cols=251 Identities=10% Similarity=0.095 Sum_probs=126.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCC-hhHHHhH
Q 002431 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM-PQEAIMCYQRAVQTRPN-AIAFGNL 242 (922)
Q Consensus 165 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~-~~~~~~l 242 (922)
+|++..++..++.++...|++++|+..++++++++|++..+|+.+|.++...|+ +++|+..|+++++.+|+ ..+|..+
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~ 172 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 444445555555555555555555555555555555555555555555555553 55555555555555444 4444555
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHH-cCChh
Q 002431 243 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME-WNMLP 321 (922)
Q Consensus 243 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~ 321 (922)
+.++...|++++|+..|++++.++|++..+|+.+|.++...|++++|+..|+++++++|++..+|+.+|.++.. .|..+
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcch
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555 33334
Q ss_pred HH-----HHHHHHHHhcCCCCchhhhhHHHHHHHcC--CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhC--------
Q 002431 322 AA-----ASYYKATLAVTTGLSAPFNNLAVIYKQQG--NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG-------- 386 (922)
Q Consensus 322 ~A-----~~~~~~a~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-------- 386 (922)
+| +..|++++.++|++..+|+.++.++...| ++++|++.++++ +.+|+++.++..+|.+|.++|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 44 24444444444444444444444444444 344444444444 444444444455555444442
Q ss_pred -CHHHHHHHHHHH-HhhCCCcHHHHHHHHHHH
Q 002431 387 -RVTDAIQDYIRA-ITIRPTMAEAHANLASAY 416 (922)
Q Consensus 387 -~~~~A~~~~~~a-l~~~p~~~~~~~~la~~~ 416 (922)
.+++|+++|+++ ++++|.....|..++..+
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 124444444444 444444444444444433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-24 Score=238.46 Aligned_cols=350 Identities=15% Similarity=0.107 Sum_probs=217.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002431 38 LLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI---DLAIRYYLVAIELRPNFADAWSNLASAYMRK 114 (922)
Q Consensus 38 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 114 (922)
.+|..+++.|++++|+..|+++.+. .++.+++.+|.+|...|+. ++|+.+|+++++. ++.+++.+|.++...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhC
Confidence 3455555555555555555555443 2344455555555555555 5555555555543 344555555544433
Q ss_pred C-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 115 G-----RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189 (922)
Q Consensus 115 g-----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 189 (922)
+ ++++|+..|+++.+.+ ++.+++.+|.+|...+..+++. ++.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~-------------------------------~a~ 129 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNV-------------------------------NAQ 129 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTC-------------------------------CHH
T ss_pred CCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCH-------------------------------HHH
Confidence 3 4445555555554432 2224444444444433322221 223
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHH----HHHHHHhhCCChhHHHhHHHHHHHcC---ChHHHHHHHHHH
Q 002431 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIM----CYQRAVQTRPNAIAFGNLASTYYERG---QADMAILYYKQA 262 (922)
Q Consensus 190 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~ 262 (922)
+.+.++.. +.++.+.+.+|.+|...+.++++.. +++.+...+| .+++.++.+|...| ++++|+..|+++
T Consensus 130 ~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~--~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 130 QQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD--ICYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp HHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT--THHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 33333322 2335566667777766664443333 3333333333 37777777777777 778888888888
Q ss_pred HhcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCChHHHHhHHHH-H--HHcCChhHHHHHHHHHHhcCC
Q 002431 263 IGCDPRFLEAYNNLGNALKDV----GRVDEAIQCYNQCLSLQPSHPQALTNLGNI-Y--MEWNMLPAAASYYKATLAVTT 335 (922)
Q Consensus 263 l~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~~~~~~A~~~~~~a~~~~~ 335 (922)
.+..+.....++.+|.+|... +++++|+.+|+++. |.++.+++.+|.+ + ...+++++|+.+|+++.+.
T Consensus 206 a~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-- 280 (452)
T 3e4b_A 206 VSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-- 280 (452)
T ss_dssp HHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--
Confidence 888777777777888887655 68888888888876 7788888888887 4 4678888888888888754
Q ss_pred CCchhhhhHHHHHHHcC-----CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCcH
Q 002431 336 GLSAPFNNLAVIYKQQG-----NYADAISCYNEVLRIDPLAADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPTMA 406 (922)
Q Consensus 336 ~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~ 406 (922)
.++.+++.+|.+|. .| ++++|+.+|+++. +.++.+++.+|.+|.. ..++++|+.+|+++.+. .++
T Consensus 281 g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~ 354 (452)
T 3e4b_A 281 DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQN 354 (452)
T ss_dssp TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCT
T ss_pred CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChH
Confidence 47788888888887 55 9999999999998 8899999999988887 44999999999999875 456
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCH
Q 002431 407 EAHANLASAYKD----SGHVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 407 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 440 (922)
.+.++||.+|.. ..++++|..+|+++.+.++...
T Consensus 355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a 392 (452)
T 3e4b_A 355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEA 392 (452)
T ss_dssp THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 788999999986 4589999999999998775433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-21 Score=229.94 Aligned_cols=402 Identities=13% Similarity=0.124 Sum_probs=307.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC---CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNP---LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
.++.+...|.+.+|++++++++.... ++...-..++.+..+. +..+..++..+.-..+ ...+|.++...|
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDIANIAISNE 1063 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHHHHHHHhCC
Confidence 46778899999999999999984322 2333333344444443 3333333333322111 234889999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (922)
.+++|..+|+++- .+..+ +...+...|++++|.++++++ +.+.+|..+|..+...|++++|+..|.++
T Consensus 1064 lyEEAf~IYkKa~----~~~~A---~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD----VNTSA---VQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred CHHHHHHHHHHcC----CHHHH---HHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 9999999999973 21222 222344788999999998866 56889999999999999999999999775
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHh
Q 002431 162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN 241 (922)
Q Consensus 162 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 241 (922)
+++..|..++.++.+.|++++|+++|..+.+..++ +.+...+|.+|.+.+++++ ++.|. ..++...+..
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI----~~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI----NGPNNAHIQQ 1200 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH----hCCCHHHHHH
Confidence 77888999999999999999999999999887744 3344468899999988885 44332 3455667778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChh
Q 002431 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP 321 (922)
Q Consensus 242 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 321 (922)
+|..+...|++++|..+|.++ ..|..++.++.+.|++++|++.++++ .+..+|...+.++...|++.
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHH
Confidence 999999999999999999986 47889999999999999999999988 55789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH--hCCHHHHHHHHHHHH
Q 002431 322 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE--IGRVTDAIQDYIRAI 399 (922)
Q Consensus 322 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al 399 (922)
.|..+... +.. ++..+..++..|...|.+++|+.++++++.+++.+...+..+|.++.+ -++..++++.|...+
T Consensus 1268 LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A 1268 LAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred HHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 99988764 322 344566888999999999999999999999999888888888887776 467888899999888
Q ss_pred hhCC-----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHhhccc
Q 002431 400 TIRP-----TMAEAHANLASAYKDSGHVEAAIKSYKQALLL------------RPDFPEATCNLLHTLQCV 453 (922)
Q Consensus 400 ~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~~~l~~~~~~~ 453 (922)
.+.| ++...|..+..+|.+-|+++.|....-+.... .+.+++.++..+..+...
T Consensus 1344 ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~ 1414 (1630)
T 1xi4_A 1344 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 1414 (1630)
T ss_pred ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhh
Confidence 8776 67888999999999999999998433322222 567788887777766643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-23 Score=215.53 Aligned_cols=261 Identities=12% Similarity=-0.001 Sum_probs=207.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHH
Q 002431 177 GLFMESGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 255 (922)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 255 (922)
...+..|++.+|+..+++....+|++ .+....++++|...|++++|+..++.. ..|...++..++..+...++.++|
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--CChhHHHHHHHHHHHcCCCcHHHH
Confidence 34556777777777777766655554 346666777888888888877766542 222366777778888888888888
Q ss_pred HHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhc
Q 002431 256 ILYYKQAIGC--DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 333 (922)
Q Consensus 256 ~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 333 (922)
++.+++++.. +|++..+++.+|.++...|++++|++.+++ |.+..++..++.++.+.|++++|...|+++++.
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 8888887754 588888888888888888888888888877 778888888888888888888888888888888
Q ss_pred CCCCchhhhhHH--HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 002431 334 TTGLSAPFNNLA--VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 411 (922)
Q Consensus 334 ~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 411 (922)
+|++.......+ .++...|++++|+..|+++++.+|+++.+++.+|.++.++|++++|+..|+++++.+|+++.++.+
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 877653333222 334455899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHH-HHHHHHHHHhcCCCCHHHHH
Q 002431 412 LASAYKDSGHVEA-AIKSYKQALLLRPDFPEATC 444 (922)
Q Consensus 412 la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~ 444 (922)
+|.++...|+.++ +.++++++++++|+++.+..
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999876 57889999999999987653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=236.09 Aligned_cols=377 Identities=15% Similarity=0.081 Sum_probs=223.6
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDY---DMCIARNEEALRLEPRFAECYGNMANAWKE 79 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 79 (922)
..+|..+++.|++++|++.|+++.+. .++.+++.+|.+|...|++ ++|+..|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 46899999999999999999999876 4678899999999999998 9999999999976 77889999997777
Q ss_pred cC-----CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002431 80 KG-----DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA---AQCCRQALALNPLLVDAHSNLGNLMKAQGLV 151 (922)
Q Consensus 80 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 151 (922)
.+ ++++|+.+|+++++.. ++.+++.+|.+|...+..+++ .+.+.++.. +.++.+.+.+|.++...+.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCc
Confidence 66 8899999999999854 455899999999987765544 344444333 23466777788888777755
Q ss_pred HHHHHH----HHHHHhhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CChH
Q 002431 152 QEAYSC----YLEALRIQPTFAIAWSNLAGLFMESG---DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL----GMPQ 220 (922)
Q Consensus 152 ~~A~~~----~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~----g~~~ 220 (922)
+++... ++.+...+ +.+++.++.+|...| ++++|+..|+++.+..+.....++.+|.+|... ++++
T Consensus 158 ~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp GGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred ccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 444433 33322222 225666666666666 666666666666666655555555566555433 3444
Q ss_pred HHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH-H--HHcCCHHHHHHHHHHHH
Q 002431 221 EAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA-L--KDVGRVDEAIQCYNQCL 297 (922)
Q Consensus 221 ~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~al 297 (922)
+|+.+|+++. |+++.+++.+|.+ + ...+++++|+.+|+++.
T Consensus 235 ~A~~~~~~aa------------------------------------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 235 TAQALLEKIA------------------------------------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHHHHHHG------------------------------------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc------------------------------------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 5555554444 4444455555554 2 23455555555555555
Q ss_pred hhCCCChHHHHhHHHHHHHcC-----ChhHHHHHHHHHHhcCCCCchhhhhHHHHHHH----cCCHHHHHHHHHHHHccC
Q 002431 298 SLQPSHPQALTNLGNIYMEWN-----MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ----QGNYADAISCYNEVLRID 368 (922)
Q Consensus 298 ~~~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 368 (922)
+.+ ++.+++.+|.+|. .| ++++|..+|+++. +.++.+++++|.+|.. ..++++|+.+|+++.+.
T Consensus 279 ~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~- 351 (452)
T 3e4b_A 279 AAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN- 351 (452)
T ss_dssp HTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-
T ss_pred HCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-
Confidence 332 4555555555555 33 5555666665555 5555566666655554 33677777777777653
Q ss_pred CCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCC
Q 002431 369 PLAADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS--GHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 369 p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p 437 (922)
.++.+.+.+|.+|.. ..++.+|..+|+++.+..+ ..+...+..+...+ ++..+|....++..+..+
T Consensus 352 -g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~ 423 (452)
T 3e4b_A 352 -GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLEAPLTPAQRAEGQRLVQQELAARG 423 (452)
T ss_dssp -TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 445667777777764 3577777777777777654 34455555554443 366777777777766543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-22 Score=213.91 Aligned_cols=259 Identities=13% Similarity=0.034 Sum_probs=185.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLR-TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
-.+.++..|+|.+|+..++++...+|++ .+....++.+|...|++++|+..++. .+|.+..++..++..+...++.
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcH
Confidence 3566778888888888888777766665 45667778888888888888877654 2455666777777788888888
Q ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 84 DLAIRYYLVAIEL--RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (922)
Q Consensus 84 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (922)
++|++.+++++.. +|+++.++..+|.++...|++++|++.+++ |.+..++..++.++...|++++|+..|+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888887765 577888888888888888888888887776 677778888888888888888888888888
Q ss_pred HhhCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhH
Q 002431 162 LRIQPTFAIAWSNLA--GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIA 238 (922)
Q Consensus 162 l~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~ 238 (922)
++.+|++.......+ .++...|++++|+..|+++++..|+++.+++.+|.++...|++++|...|+++++.+|+ ..+
T Consensus 157 ~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 777777653332222 33334467777777777777777777777777777777777777777777777776665 666
Q ss_pred HHhHHHHHHHcCChHH-HHHHHHHHHhcCCCcHH
Q 002431 239 FGNLASTYYERGQADM-AILYYKQAIGCDPRFLE 271 (922)
Q Consensus 239 ~~~l~~~~~~~g~~~~-A~~~~~~~l~~~p~~~~ 271 (922)
+.+++.++...|+.++ +..+++++++.+|+++.
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 6666666666666654 34566666666666663
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=216.84 Aligned_cols=248 Identities=20% Similarity=0.210 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcC--CC-cHHHHHHHHHHH
Q 002431 205 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCD--PR-FLEAYNNLGNAL 280 (922)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~l~~~~ 280 (922)
.++.+|.++...|++++|+..|+++++..|+ ..++..++.++...|++++|+..+++++... +. ...++..+|.++
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3444555555555555555555555555544 3455555555555555555555555555411 11 134577777777
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHH
Q 002431 281 KDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360 (922)
Q Consensus 281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 360 (922)
...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++..|.+..++..+|......+++++|+..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777877787777777777778888888888888888888888888888888888888888444445589999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhC---CC-----cHHHHHHHHHHHHhcCCHHHHHHHH
Q 002431 361 YNEVLRIDPLAADGLVNRGNTYKEIGR---VTDAIQDYIRAITIR---PT-----MAEAHANLASAYKDSGHVEAAIKSY 429 (922)
Q Consensus 361 ~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~ 429 (922)
|+++++.+|++..++..+|.++...|+ +++|+..|+++++.. |+ ...++..+|.+|...|++++|+++|
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999888899999999998888 888999999988875 44 2368888999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHhhcc
Q 002431 430 KQALLLRPDFPEATCNLLHTLQC 452 (922)
Q Consensus 430 ~~al~~~p~~~~~~~~l~~~~~~ 452 (922)
+++++++|+++.++..+......
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHhcCccHHHHHHHhhhhhcc
Confidence 99999999999888776554443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=208.04 Aligned_cols=200 Identities=24% Similarity=0.273 Sum_probs=160.7
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS 109 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 109 (922)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 66778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 002431 110 AYMRK-----------GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 178 (922)
Q Consensus 110 ~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 178 (922)
++... |++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+ +++.++..+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 88888 888888888888888888888888888888888888888888888888888 888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002431 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 230 (922)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (922)
+...|++++|+..|+++++.+|+++.++..++.++...|++++|+..|+++-
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888888888888887653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-23 Score=211.93 Aligned_cols=237 Identities=20% Similarity=0.254 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCc-------HHHHHHH
Q 002431 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRF-------LEAYNNL 276 (922)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~l 276 (922)
..+..+|.++...|++++|+..|+++++...+..++..++.++...|++++|+..++++++..|+. ..++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 344444555555555555555555554444224445555555555555555555555555444433 4667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHH
Q 002431 277 GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYAD 356 (922)
Q Consensus 277 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 356 (922)
|.++...|++++|+..++++++..|. +.++...|++++|...+++++...|.+..++..+|.++...|++++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 77777777777777777777777665 4556666777888888888888888888888888888888888888
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002431 357 AISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436 (922)
Q Consensus 357 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 436 (922)
|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++
T Consensus 158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ------CCCHHHHHHHHH
Q 002431 437 ------PDFPEATCNLLH 448 (922)
Q Consensus 437 ------p~~~~~~~~l~~ 448 (922)
|++..++..+..
T Consensus 238 ~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 238 AEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHTTTTHHHHHHHHHH
T ss_pred hhhcCCCchHHHHHHHHH
Confidence 777666655543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-23 Score=206.73 Aligned_cols=196 Identities=19% Similarity=0.235 Sum_probs=104.6
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
...+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV 84 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred Hc-----------CChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 002431 316 EW-----------NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 384 (922)
Q Consensus 316 ~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 384 (922)
.. |++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++ +++.++..+|.++..
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~ 163 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLS 163 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH
Confidence 55 555555555555555555555555555555555555555555555555555 555555555555555
Q ss_pred hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002431 385 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432 (922)
Q Consensus 385 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 432 (922)
.|++++|+..|+++++.+|+++.++..++.++...|++++|+..|+++
T Consensus 164 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 164 MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-23 Score=214.58 Aligned_cols=244 Identities=17% Similarity=0.136 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHH
Q 002431 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF----ADAWSNLAS 109 (922)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~ 109 (922)
+.++.+|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++ .|.+ ..++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 44555566666666666666666666666666555666666666666666666666666655 2221 334566666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 110 AYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189 (922)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 189 (922)
++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..++......+++++|+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666663333334666666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhC---CC------hhHHHhHHHHHHHcCChHHHHH
Q 002431 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGM---PQEAIMCYQRAVQTR---PN------AIAFGNLASTYYERGQADMAIL 257 (922)
Q Consensus 190 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~------~~~~~~l~~~~~~~g~~~~A~~ 257 (922)
..++++++..|++..++..++.++...|+ +++|+..++++++.. |+ ..++..+|.++...|++++|+.
T Consensus 163 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 163 SSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666666666666666665 555666666665542 21 1334444444444555555555
Q ss_pred HHHHHHhcCCCcHHHHHHHHH
Q 002431 258 YYKQAIGCDPRFLEAYNNLGN 278 (922)
Q Consensus 258 ~~~~~l~~~p~~~~~~~~l~~ 278 (922)
.++++++.+|++..++-.++.
T Consensus 243 ~~~~al~~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC-
T ss_pred HHHHHHhcCccHHHHHHHhhh
Confidence 555555555554444444433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-22 Score=208.78 Aligned_cols=225 Identities=20% Similarity=0.215 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------HHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF-------ADAWS 105 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 105 (922)
+..+..+|.+++..|++++|+..|+++++.+ .++.++..+|.++...|++++|+..++++++..|++ +.++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 4556666666666666666666666666666 566666666666666666666666666666655543 45666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q 002431 106 NLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 185 (922)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 185 (922)
.+|.++...|++++|+..++++++..|. +.++...|++++|+..+++++..+|.+..++..+|.++...|++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 6666666666666666666666666554 23444455555666666665555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHh
Q 002431 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIG 264 (922)
Q Consensus 186 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 264 (922)
++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|+ ..++..++.++...|++++|+..++++++
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555444 44444444444444555555444444444
Q ss_pred cC
Q 002431 265 CD 266 (922)
Q Consensus 265 ~~ 266 (922)
.+
T Consensus 236 ~~ 237 (258)
T 3uq3_A 236 KD 237 (258)
T ss_dssp HH
T ss_pred hC
Confidence 44
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-20 Score=217.32 Aligned_cols=384 Identities=13% Similarity=0.119 Sum_probs=311.2
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP---RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLA 108 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 108 (922)
+++-.-.....|...|.+.+|++.|++++-... ++......++.+..+. +..+..++..+.-..+ ...+|
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eIA 1056 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDIA 1056 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHHH
Confidence 344455677788899999999999999984332 2344444455555554 3344444444332211 23479
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH
Q 002431 109 SAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRA 188 (922)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 188 (922)
.++...|.+++|..+|+++- .... .+...+...+++++|.+.++++ +.+.+|+.+|.++...|++++|
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~----~~~~---A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD----VNTS---AVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC----CHHH---HHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999972 1112 2233344888999999998865 5689999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002431 189 LQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPR 268 (922)
Q Consensus 189 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 268 (922)
+..|.++ +++..+..++.++.+.|++++|+++|..+.+..+++.....++.+|.+.+++++ ++.|- ..++
T Consensus 1125 IdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee-le~fI----~~~n 1194 (1630)
T 1xi4_A 1125 IDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE-LEEFI----NGPN 1194 (1630)
T ss_pred HHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH-HHHHH----hCCC
Confidence 9999875 788999999999999999999999999999888776566679999999999885 44332 2333
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHH
Q 002431 269 FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY 348 (922)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 348 (922)
...+..+|..+...|++++|..+|.++ ..|..++.++.+.|++++|++.++++ .+..+|...+.++
T Consensus 1195 -~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1195 -NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFAC 1260 (1630)
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHH
Confidence 456778999999999999999999995 58899999999999999999999998 5568999999999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc--CCHHHHH
Q 002431 349 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS--GHVEAAI 426 (922)
Q Consensus 349 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~ 426 (922)
...|++..|..+... +. .+++.+..++..|...|.+++|+..+++++.+++.+...+..++.+|.+- ++..+++
T Consensus 1261 ve~~Ef~LA~~cgl~-Ii---v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLH-IV---VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhhhHHHHHHHHHHh-hh---cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999998875 33 44666778999999999999999999999999999999999999988875 5889999
Q ss_pred HHHHHHHhcCC-----CCHHHHHHHHHhhcccCChhhHhHH
Q 002431 427 KSYKQALLLRP-----DFPEATCNLLHTLQCVCSWEDRDRM 462 (922)
Q Consensus 427 ~~~~~al~~~p-----~~~~~~~~l~~~~~~~~~~~~a~~~ 462 (922)
+.|.+.+.+.| +....|..+...|...++|+.|...
T Consensus 1337 k~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1337 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 99999988877 7888899999999999998887643
|
| >3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-23 Score=231.53 Aligned_cols=346 Identities=13% Similarity=0.097 Sum_probs=235.3
Q ss_pred ccceeeeecCCCC--CChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC-------HHHHH
Q 002431 535 RRLRVGYVSSDFG--NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS-------SDMIA 605 (922)
Q Consensus 535 ~~~rig~~s~~~~--~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 605 (922)
+++||.+++..+. .+++..++..+.+.+ .+++|.+++....... ....-......++.+.... ...+.
T Consensus 3 ~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEE-AHAYDKTLDYEVIRWPRSVMLPTPTTAHAMA 79 (394)
T ss_dssp -CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHH-HHHHHTTCSSEEEEESSSSCCSCHHHHHHHH
T ss_pred CCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccc-hhhhccccceEEEEccccccccchhhHHHHH
Confidence 4689999998876 456778999999999 3678888876543211 1222223333444444321 36789
Q ss_pred HHHHhCCCeEEEcCCCcCCCCchhhhhcCCCc-eEEeccccCCCCCCC-ccc------EEEecCccCCcCccCC------
Q 002431 606 KLINEDKIQILINLNGYTKGARNEIFAMQPAP-IQVSYMGFPGTTGAS-YID------YLVTDEFVSPLRYAHI------ 671 (922)
Q Consensus 606 ~~i~~~~~dil~~~~~~~~~~~~~~~~~~~ap-vq~~~~g~~~t~g~~-~~d------~~~~d~~~~~~~~~~~------ 671 (922)
+.|++.++||++-......+.-..++.....| +..++.|+....... ... +..+|.+++++.....
T Consensus 80 ~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~ 159 (394)
T 3okp_A 80 EIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYISQYTLRRFKSAF 159 (394)
T ss_dssp HHHHHTTCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHHHHTTSHHHHHHHHHHHHHCSEEEESCHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchhhhhhcchhhHHHHHHHHhCCEEEEcCHHHHHHHHHhc
Confidence 99999999999532211111111122223455 555655542211110 000 1134555555543111
Q ss_pred -CccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEe
Q 002431 672 -YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLL 748 (922)
Q Consensus 672 -~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~ 748 (922)
..+++..+|+..-...... ..+......|+.+|++++.++++.++++ .|+.+.++++|.++.+..|+.+|+|+
T Consensus 160 ~~~~~~~vi~ngv~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~ 235 (394)
T 3okp_A 160 GSHPTFEHLPSGVDVKRFTP----ATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIV 235 (394)
T ss_dssp CSSSEEEECCCCBCTTTSCC----CCHHHHHHHHHHTTCCTTCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred CCCCCeEEecCCcCHHHcCC----CCchhhHHHHHhcCCCcCceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEE
Confidence 1345555664332111100 0000112378889999988888888886 59999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCC-------CC-hhHHHHHHHcCCCeeeecC
Q 002431 749 RFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLC-------NA-HTTGTDILWAGLPMITLPL 820 (922)
Q Consensus 749 ~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~-------~g-~~t~~eal~~g~Pvv~~~~ 820 (922)
|+|+. .+.+++.+ .|+ .++|+|.|.++.++...+|+.+|++|.|+.+ +| |++++|||++|+|||+.+.
T Consensus 236 G~g~~-~~~l~~~~--~~~-~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~ 311 (394)
T 3okp_A 236 GSGRY-ESTLRRLA--TDV-SQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTS 311 (394)
T ss_dssp CCCTT-HHHHHHHT--GGG-GGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSS
T ss_pred cCchH-HHHHHHHH--hcc-cCeEEEcCCCCHHHHHHHHHhCCEEEecCccccccccccccCcHHHHHHHcCCCEEEeCC
Confidence 99876 77888777 677 4899999999999999999999999999988 88 9999999999999998766
Q ss_pred CcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 821 EKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 821 ~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
.....-+.. | .+ +++. |++++++++.+++.|++.+.+++++.++... ..|+++.++++++++|+++.+
T Consensus 312 ~~~~e~i~~------~-~g-~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~r 381 (394)
T 3okp_A 312 GGAPETVTP------A-TG-LVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVE--AEWSWEIMGERLTNILQSEPR 381 (394)
T ss_dssp TTGGGGCCT------T-TE-EECCTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HHTBHHHHHHHHHHHHHSCCC
T ss_pred CChHHHHhc------C-Cc-eEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHhcc
Confidence 555544432 4 45 5544 9999999999999999999999999988763 359999999999999987654
Q ss_pred HHh
Q 002431 899 LHC 901 (922)
Q Consensus 899 ~~~ 901 (922)
...
T Consensus 382 ~~~ 384 (394)
T 3okp_A 382 KLA 384 (394)
T ss_dssp ---
T ss_pred Ccc
Confidence 433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=225.79 Aligned_cols=297 Identities=23% Similarity=0.254 Sum_probs=163.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCcH
Q 002431 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV----DAHSNLGNLMKAQGLVQEAYSCYLEALRI------QPTFA 169 (922)
Q Consensus 100 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 169 (922)
...++..+|..+...|++++|+..|+++++..|.+. .++..+|.++...|++++|+..+++++.. .|...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 455666777777777777777777777777776663 45666777777777777777777766654 22334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC-------------hHHHHHHHHHHH
Q 002431 170 IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF------PDAYLNLGNVYKALGM-------------PQEAIMCYQRAV 230 (922)
Q Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g~-------------~~~A~~~~~~~~ 230 (922)
.++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|+ +++|...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~----- 162 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA----- 162 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH-----
Confidence 455555556666666666666655555543321 1244444444444444 0000000
Q ss_pred hhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002431 231 QTRPNAIAFGNLASTYYERGQADMAILYYKQAIGC------DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 304 (922)
Q Consensus 231 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (922)
+++|+..+++++.. .+....++..+|.++...|++++|+..++++++..+...
T Consensus 163 ---------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 163 ---------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred ---------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 44444444443322 122234555666666666666666666666665543322
Q ss_pred H------HHHhHHHHHHHcCChhHHHHHHHHHHhcCCCC------chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC-
Q 002431 305 Q------ALTNLGNIYMEWNMLPAAASYYKATLAVTTGL------SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA- 371 (922)
Q Consensus 305 ~------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 371 (922)
. ++..+|.++...|++++|..++++++...+.. ..++..+|.++...|++++|+..++++++..+..
T Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 2 55555555555555555555555555544332 3445556666666666666666666665553222
Q ss_pred -----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHhcCCH
Q 002431 372 -----ADGLVNRGNTYKEIGRVTDAIQDYIRAITIR------PTMAEAHANLASAYKDSGHV 422 (922)
Q Consensus 372 -----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~ 422 (922)
..++..+|.++...|++++|+..+++++++. +....++..++.++...|+.
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 4455666666666666666666666666552 22244555566666655544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=223.64 Aligned_cols=269 Identities=26% Similarity=0.322 Sum_probs=166.1
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCc
Q 002431 31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF----AECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNF 100 (922)
Q Consensus 31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 100 (922)
.....+..+|.++...|++++|+..|+++++..|.+ ..++..+|.++...|++++|+.+|+++++. .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 345566777777888888888888888887777776 356777777777888888888877777665 2334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHH
Q 002431 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL------VDAHSNLGNLMKAQGL--------------------VQEA 154 (922)
Q Consensus 101 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A 154 (922)
..++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 5677777777777777777777777777664322 3366677777777777 6677
Q ss_pred HHHHHHHHhh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCChHHH
Q 002431 155 YSCYLEALRI------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEA 222 (922)
Q Consensus 155 ~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~l~~~~~~~g~~~~A 222 (922)
+..++++++. .+....++..+|.++...|++++|+..++++++..+.... ++..+|.++...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7666666654 2223445666666666666666666666666655433222 555666666666666666
Q ss_pred HHHHHHHHhhCCC-------hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHH
Q 002431 223 IMCYQRAVQTRPN-------AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF------LEAYNNLGNALKDVGRVDEA 289 (922)
Q Consensus 223 ~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g~~~~A 289 (922)
+..++++++..+. ..++..++.++...|++++|+..+++++...+.. ..++..+|.++...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6666665543221 3344455555555555555555555555332211 33445555555555555555
Q ss_pred HHHHHHHHhh
Q 002431 290 IQCYNQCLSL 299 (922)
Q Consensus 290 ~~~~~~al~~ 299 (922)
+.+++++++.
T Consensus 327 ~~~~~~al~~ 336 (406)
T 3sf4_A 327 MHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
| >2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=224.27 Aligned_cols=342 Identities=12% Similarity=0.100 Sum_probs=227.0
Q ss_pred ccceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCCh-HHHHHHHhccCc--eEECCCCC-------HHHH
Q 002431 535 RRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGT-EWRQRTQSEAEH--FVDVSAMS-------SDMI 604 (922)
Q Consensus 535 ~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~-------~~~~ 604 (922)
+++||.++++.+..+++..++..+.+.+.+.++||.+++....... .....+...... .+.+.... ...+
T Consensus 39 ~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (416)
T 2x6q_A 39 KGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNALQGNESLKLTEEMKELYLNVNREN 118 (416)
T ss_dssp TTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHHHHTTCCSCCCCHHHHHHHHHHHHHH
T ss_pred hccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhcccceeecccccccccHHHHHHHHHHHHHH
Confidence 4689999999887778888888899988888899988776543211 011112211111 11121100 0124
Q ss_pred HHHHHhCCCeEEEcCCCcCCCCchh---hhhcCCCceEEeccccCCCCC----------CCcccEEEecCccCCcCc-cC
Q 002431 605 AKLINEDKIQILINLNGYTKGARNE---IFAMQPAPIQVSYMGFPGTTG----------ASYIDYLVTDEFVSPLRY-AH 670 (922)
Q Consensus 605 ~~~i~~~~~dil~~~~~~~~~~~~~---~~~~~~apvq~~~~g~~~t~g----------~~~~d~~~~d~~~~~~~~-~~ 670 (922)
.+.++..++||+ |+|+.... .+..+..|+.++..+...... +...|.+ +++.++. ..
T Consensus 119 ~~~l~~~~~Dvv-----~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~----i~~~s~~~~~ 189 (416)
T 2x6q_A 119 SKFIDLSSFDYV-----LVHDPQPAALIEFYEKKSPWLWRCHIDLSSPNREFWEFLRRFVEKYDRY----IFHLPEYVQP 189 (416)
T ss_dssp HHSSCGGGSSEE-----EEESSTTGGGGGGSCCCSCEEEECCSCCSSCCHHHHHHHHHHHTTSSEE----EESSGGGSCT
T ss_pred HHHHhhcCCCEE-----EEeccchhhHHHHHHhcCCEEEEEccccCCccHHHHHHHHHHHHhCCEE----EEechHHHHh
Confidence 555667799999 44443221 112223688776544322111 0112222 2223222 22
Q ss_pred CCc-cceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEE
Q 002431 671 IYS-EKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWL 747 (922)
Q Consensus 671 ~~~-e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~ 747 (922)
.+. +++..+|++.-...... .+..+......|+++|++++.+++++++|+ .|+.+.++++|.++.+..|+.+|+|
T Consensus 190 ~~~~~~~~vi~ngvd~~~~~~--~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i 267 (416)
T 2x6q_A 190 ELDRNKAVIMPPSIDPLSEKN--VELKQTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLL 267 (416)
T ss_dssp TSCTTTEEECCCCBCTTSTTT--SCCCHHHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred hCCccceEEeCCCCChhhhcc--cccChhhHHHHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEE
Confidence 222 45555665432111100 000000011267789999888888888876 5999999999999999999999999
Q ss_pred ecCChh----hHHHHHHHHHHcCCCCCceEEcCCCC---cHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeec
Q 002431 748 LRFPAA----GEMRLRAYAVAQGVQPDQIIFTDVAM---KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLP 819 (922)
Q Consensus 748 ~~~~~~----~~~~l~~~~~~~g~~~~rv~f~~~~~---~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~ 819 (922)
+|+|+. ..+.+++.+++.|+ .++|.|+|+++ ..+...+|+.+|++|.|+.++| |++++|||++|+|||+.+
T Consensus 268 ~G~g~~~~~~~~~~l~~~~~~~~~-~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~~~~lEAma~G~PvI~~~ 346 (416)
T 2x6q_A 268 VGVMAHDDPEGWIYFEKTLRKIGE-DYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIGRA 346 (416)
T ss_dssp EECCCTTCHHHHHHHHHHHHHHTT-CTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHHHHHTTCCEEEES
T ss_pred EecCcccchhHHHHHHHHHHHhCC-CCcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCccHHHHHHHcCCCEEEcc
Confidence 999853 25678888999999 58999999654 5688889999999999999999 999999999999999655
Q ss_pred CCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 002431 820 LEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 897 (922)
Q Consensus 820 ~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 897 (922)
......- + .-|-.+ +++.|++++++++.++.+|++.+++++++.++... ..|+++.++++++++|+++.
T Consensus 347 ~~g~~e~-----i-~~~~~g-~l~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~--~~fs~~~~~~~~~~~~~~l~ 415 (416)
T 2x6q_A 347 VGGIKFQ-----I-VDGETG-FLVRDANEAVEVVLYLLKHPEVSKEMGAKAKERVR--KNFIITKHMERYLDILNSLG 415 (416)
T ss_dssp CHHHHHH-----C-CBTTTE-EEESSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH--HHTBHHHHHHHHHHHHHTC-
T ss_pred CCCChhh-----e-ecCCCe-EEECCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--HHcCHHHHHHHHHHHHHHhh
Confidence 3221111 1 114556 66679999999999999999999999999988763 24999999999999998653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=199.00 Aligned_cols=217 Identities=18% Similarity=0.220 Sum_probs=184.4
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
...+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 66788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002431 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 395 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 395 (922)
..|++++|...++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcc
Q 002431 396 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQC 452 (922)
Q Consensus 396 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 452 (922)
+++++..|++..++..++.+|...|++++|...|+++++.+|+++.++..+......
T Consensus 183 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999988877655443
|
| >3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-23 Score=233.18 Aligned_cols=344 Identities=15% Similarity=0.106 Sum_probs=228.0
Q ss_pred CCcccceeeeecCCCCC---------ChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCC----
Q 002431 532 GGLRRLRVGYVSSDFGN---------HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA---- 598 (922)
Q Consensus 532 ~~~~~~rig~~s~~~~~---------h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 598 (922)
...+.+||.+++..+.. +++..++..+.+.+.+.++||.+++............+.. ...++.++.
T Consensus 16 ~~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~-~v~v~~~~~~~~~ 94 (438)
T 3c48_A 16 PRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAE-NLRVINIAAGPYE 94 (438)
T ss_dssp ---CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCSEEEEET-TEEEEEECCSCSS
T ss_pred cCcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcccccccC-CeEEEEecCCCcc
Confidence 45677899999987643 4566788889898888889999988654321100000000 111222211
Q ss_pred -CC-------H----HHHHHH-HHhC-CCeEEEcCCCcCCCCchhhhh-----cCCCceEEeccccCCCC--CCCc----
Q 002431 599 -MS-------S----DMIAKL-INED-KIQILINLNGYTKGARNEIFA-----MQPAPIQVSYMGFPGTT--GASY---- 653 (922)
Q Consensus 599 -~~-------~----~~~~~~-i~~~-~~dil~~~~~~~~~~~~~~~~-----~~~apvq~~~~g~~~t~--g~~~---- 653 (922)
.. . ..+.+. ++.. ++||+ |++.....+++ ....|+.++..+..... ....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div-----~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~ 169 (438)
T 3c48_A 95 GLSKEELPTQLAAFTGGMLSFTRREKVTYDLI-----HSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVKNSYRDDSDTP 169 (438)
T ss_dssp SCCGGGGGGGHHHHHHHHHHHHHHHTCCCSEE-----EEEHHHHHHHHHHHHHHHTCCEEEECSSCHHHHSCC----CCH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccCCCCEE-----EeCCccHHHHHHHHHHHcCCCEEEEecCCcccccccccccCCc
Confidence 00 0 123333 5544 59999 55543222222 13468887765442100 0000
Q ss_pred ---c-------cEEEecCccCCcCccCC--------CccceeecCCccccCCCccccccCCCCCCCC---CcCCCCCCCC
Q 002431 654 ---I-------DYLVTDEFVSPLRYAHI--------YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQP---KRSDYGLPED 712 (922)
Q Consensus 654 ---~-------d~~~~d~~~~~~~~~~~--------~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~---~r~~~~l~~~ 712 (922)
. -+..+|.+++++..... ..+++..+|+..-... . .+..... .|.++|++++
T Consensus 170 ~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~g~~~~k~~vi~ngvd~~~------~-~~~~~~~~~~~r~~~~~~~~ 242 (438)
T 3c48_A 170 ESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVEL------Y-SPGNDRATERSRRELGIPLH 242 (438)
T ss_dssp HHHHHHHHHHHHHHHCSEEEESSHHHHHHHHHHHCCCGGGEEECCCCCCTTT------S-CCC----CHHHHHHTTCCSS
T ss_pred chHHHHHHHHHHHhcCCEEEEcCHHHHHHHHHHhCCChhheEEecCCccccc------c-CCcccchhhhhHHhcCCCCC
Confidence 0 01124666666553211 1234555554332111 1 1111112 6888999888
Q ss_pred cEEEEecCCC--CCCCHHHHHHHHHHHhhCC--CeEEEEecC----ChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHH
Q 002431 713 KFIFACFNQL--YKMDPEIFNTWCNILRRVP--NSALWLLRF----PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHI 784 (922)
Q Consensus 713 ~~~~~~~~~~--~K~~~~~~~~~~~il~~~p--~~~l~~~~~----~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~ 784 (922)
.+++++++++ .|+.+.++++|.++.++.| +.+|+|+|. |+. .+.+++.++++|+ .++|.|+|.++..+..
T Consensus 243 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~-~~~l~~~~~~~~l-~~~v~~~g~~~~~~~~ 320 (438)
T 3c48_A 243 TKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNAT-PDTYRHMAEELGV-EKRIRFLDPRPPSELV 320 (438)
T ss_dssp SEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC-------CHHHHHHHHTTC-TTTEEEECCCCHHHHH
T ss_pred CcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcH-HHHHHHHHHHcCC-CCcEEEcCCCChHHHH
Confidence 8899988876 4999999999999999988 799999998 554 6789999999999 5899999999999999
Q ss_pred HhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHH
Q 002431 785 RRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQ 861 (922)
Q Consensus 785 ~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~ 861 (922)
.+|+.+|++|.|+.++| |++++|||++|+|||+.+......-+. -|..+ +++ .|++++++++.++.+|++
T Consensus 321 ~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~------~~~~g-~~~~~~d~~~la~~i~~l~~~~~ 393 (438)
T 3c48_A 321 AVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVA------EGETG-LLVDGHSPHAWADALATLLDDDE 393 (438)
T ss_dssp HHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSC------BTTTE-EEESSCCHHHHHHHHHHHHHCHH
T ss_pred HHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCCCChhHHhh------CCCcE-EECCCCCHHHHHHHHHHHHcCHH
Confidence 99999999999998888 999999999999999766543333221 13344 444 489999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHH
Q 002431 862 KLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLH 900 (922)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~ 900 (922)
.+.+++++.++... . |+++.++++++++|+++.++.
T Consensus 394 ~~~~~~~~~~~~~~--~-~s~~~~~~~~~~~~~~~~~~~ 429 (438)
T 3c48_A 394 TRIRMGEDAVEHAR--T-FSWAATAAQLSSLYNDAIANE 429 (438)
T ss_dssp HHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHH--h-CCHHHHHHHHHHHHHHHhhhc
Confidence 99999999998774 3 999999999999999998754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-21 Score=198.09 Aligned_cols=210 Identities=20% Similarity=0.198 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
+..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|++..++..++.++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (922)
..|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.+..++..++.++...|++++|+..+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhH
Q 002431 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNL 242 (922)
Q Consensus 193 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l 242 (922)
+++++..|++..++..++.++...|++++|+..++++++..|+ ..++..+
T Consensus 183 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 5555555555555555555555555555555555555555554 3333333
|
| >2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-23 Score=239.10 Aligned_cols=345 Identities=10% Similarity=0.027 Sum_probs=233.3
Q ss_pred ccceeeeecCCCC-------------CChhHhhhhHHhhcCCCCCeEEEEEecCCCCCh--HHHHHHHh----ccCceEE
Q 002431 535 RRLRVGYVSSDFG-------------NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGT--EWRQRTQS----EAEHFVD 595 (922)
Q Consensus 535 ~~~rig~~s~~~~-------------~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--~~~~~~~~----~~~~~~~ 595 (922)
++|||.+++..+. .++++.++..+.+.+.+.+++|++++....... .+...+.. ....++.
T Consensus 6 ~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~ 85 (499)
T 2r60_A 6 RIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVR 85 (499)
T ss_dssp -CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEEEE
T ss_pred ccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhccCCCCeEEEE
Confidence 4589999998652 355668999999999888899999886543211 11000111 1122232
Q ss_pred CCCC-----------C-----HHHHHHHHHh--CCCeEEEcCCCcCCCCchhhhhc-----CCCceEEeccccCC-----
Q 002431 596 VSAM-----------S-----SDMIAKLINE--DKIQILINLNGYTKGARNEIFAM-----QPAPIQVSYMGFPG----- 647 (922)
Q Consensus 596 ~~~~-----------~-----~~~~~~~i~~--~~~dil~~~~~~~~~~~~~~~~~-----~~apvq~~~~g~~~----- 647 (922)
++.. . ...+.+.|++ .++||+ |+|+....+++. ...|+.++..+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Div-----h~~~~~~~~~~~~~~~~~~~p~v~~~H~~~~~~~~~ 160 (499)
T 2r60_A 86 IPFGGDKFLPKEELWPYLHEYVNKIINFYREEGKFPQVV-----TTHYGDGGLAGVLLKNIKGLPFTFTGHSLGAQKMEK 160 (499)
T ss_dssp ECCSCSSCCCGGGCGGGHHHHHHHHHHHHHHHTCCCSEE-----EEEHHHHHHHHHHHHHHHCCCEEEECSSCHHHHHHT
T ss_pred ecCCCcCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCEE-----EEcCCcchHHHHHHHHhcCCcEEEEccCcccccchh
Confidence 2210 0 1357777887 589999 666544333221 24688887655311
Q ss_pred --CCCCC-----------------cccEEEecCccCCcCcc-----CC----------CccceeecCCccccCCCccccc
Q 002431 648 --TTGAS-----------------YIDYLVTDEFVSPLRYA-----HI----------YSEKLVHVPHCYFVNDYKQKNM 693 (922)
Q Consensus 648 --t~g~~-----------------~~d~~~~d~~~~~~~~~-----~~----------~~e~~~~lp~~~~~~~~~~~~~ 693 (922)
..+.. ..-+..+|.+++++... .. ..+++..+|++.-..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~ki~vi~ngvd~~------- 233 (499)
T 2r60_A 161 LNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDDDKFSVIPPGVNTR------- 233 (499)
T ss_dssp TCCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSGGGTTTCCTTCGGGEEECCCCBCTT-------
T ss_pred hccCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHHhhhcccccccccCCCCeEEECCCcChh-------
Confidence 01110 00011346666655431 11 124555565433211
Q ss_pred cCCCCCC-----CCCcCCCC-----CCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCe-EEEEecCChhh------
Q 002431 694 DVLDPNC-----QPKRSDYG-----LPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNS-ALWLLRFPAAG------ 754 (922)
Q Consensus 694 ~~~~~~~-----~~~r~~~~-----l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~-~l~~~~~~~~~------ 754 (922)
...+.. ...|+++| ++++.+++++++|+ .|+++.++++|.++.+..|+. +|+|+|.++..
T Consensus 234 -~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~ 312 (499)
T 2r60_A 234 -VFDGEYGDKIKAKITKYLERDLGSERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSR 312 (499)
T ss_dssp -TSSSCCCHHHHHHHHHHHHHHSCGGGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTT
T ss_pred -hcCccchhhhHHHHHHHhcccccccCCCCcEEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCccccccc
Confidence 111111 23567777 77788889999876 599999999999988776765 78888872221
Q ss_pred --------HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC----cEEecCCCCCC-hhHHHHHHHcCCCeeeecCC
Q 002431 755 --------EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA----DLFLDTPLCNA-HTTGTDILWAGLPMITLPLE 821 (922)
Q Consensus 755 --------~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~----dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~ 821 (922)
.+.+++.++++|+ .++|+|+|.++..+...+|+.+ ||+|.|+.++| |++++|||++|+|||+....
T Consensus 313 l~~~~~~y~~~l~~~~~~~~l-~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~ 391 (499)
T 2r60_A 313 AGQEEKEILGKIIELIDNNDC-RGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNG 391 (499)
T ss_dssp SCHHHHHHHHHHHHHHHHTTC-BTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSB
T ss_pred ccccchHHHHHHHHHHHhcCC-CceEEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCC
Confidence 6789999999999 5899999999999999999999 99999999999 99999999999999976644
Q ss_pred cchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 002431 822 KMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899 (922)
Q Consensus 822 ~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 899 (922)
....-+. . |..+ +++ .|++++++++.++..|++.+.+++++.++... ..|+++.++++++++|+++..+
T Consensus 392 g~~e~v~-----~-~~~g-~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~--~~fs~~~~~~~~~~~y~~~~~~ 462 (499)
T 2r60_A 392 GPAEILD-----G-GKYG-VLVDPEDPEDIARGLLKAFESEETWSAYQEKGKQRVE--ERYTWQETARGYLEVIQEIADR 462 (499)
T ss_dssp HHHHHTG-----G-GTSS-EEECTTCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH--HHSBHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHhc-----C-CceE-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHhh
Confidence 3333222 1 4344 443 58999999999999999999999999988763 3599999999999999999885
Q ss_pred Hhc
Q 002431 900 HCS 902 (922)
Q Consensus 900 ~~~ 902 (922)
...
T Consensus 463 ~~~ 465 (499)
T 2r60_A 463 KDE 465 (499)
T ss_dssp ---
T ss_pred hhh
Confidence 543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=217.85 Aligned_cols=276 Identities=25% Similarity=0.299 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHH
Q 002431 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA----IAWSNLAGLFMESGDLNRALQYYKEAVKL------KPTFPDA 205 (922)
Q Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~ 205 (922)
..+..+|..+...|++++|+..|+++++..|++. .++..+|.++...|++++|+..++++++. .+....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445555566666666666666666666555544 34555555555555555555555555544 2223334
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 206 YLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR 285 (922)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 285 (922)
+..+|.++...|++++|+..++++++..+. ....+....++..+|.++...|+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQ---------------------------LGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------------------HTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---------------------------hhchHHHHHHHHHHHHHHHHcCc
Confidence 455555555555555555555554443110 00023334455566666666666
Q ss_pred -----------------HHHHHHHHHHHHhhC------CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCch---
Q 002431 286 -----------------VDEAIQCYNQCLSLQ------PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA--- 339 (922)
Q Consensus 286 -----------------~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--- 339 (922)
+++|+.+++++++.. +....++..+|.++...|++++|+.+++++++..+....
T Consensus 182 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 182 HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence 666666666655542 122346667777777777777777777777766554333
Q ss_pred ---hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------
Q 002431 340 ---PFNNLAVIYKQQGNYADAISCYNEVLRIDPLA------ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT------ 404 (922)
Q Consensus 340 ---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------ 404 (922)
++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+..++++++..+.
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 341 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHH
Confidence 67788888888888888888888888776533 568888999999999999999999999887433
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
...++..+|.+|...|++++|..+|++++++.+.
T Consensus 342 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 342 EARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 2558899999999999999999999999988654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=216.18 Aligned_cols=273 Identities=27% Similarity=0.321 Sum_probs=229.4
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCC
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA----ECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPN 99 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 99 (922)
+.....++.+|..+...|++++|+..|+++++..|++. .++..+|.++...|++++|+..|+++++. .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 44567778889999999999999999999999888875 57888999999999999999999998877 455
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHH
Q 002431 100 FADAWSNLASAYMRKGRLNEAAQCCRQALAL------NPLLVDAHSNLGNLMKAQGL-----------------VQEAYS 156 (922)
Q Consensus 100 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~ 156 (922)
...++..+|.++...|++++|+..++++++. .+....++..+|.++...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 6778889999999999999999999998877 45556688889999999999 999999
Q ss_pred HHHHHHhhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCChHHHHH
Q 002431 157 CYLEALRIQ------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIM 224 (922)
Q Consensus 157 ~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~l~~~~~~~g~~~~A~~ 224 (922)
.++++++.. +....++..++.++...|++++|+..++++++..+.... ++..+|.++...|++++|+.
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 998888753 334568888999999999999999999999887654333 78899999999999999999
Q ss_pred HHHHHHhhCCC-------hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHH
Q 002431 225 CYQRAVQTRPN-------AIAFGNLASTYYERGQADMAILYYKQAIGCDPR------FLEAYNNLGNALKDVGRVDEAIQ 291 (922)
Q Consensus 225 ~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~g~~~~A~~ 291 (922)
.+++++...+. ..++..++.++...|++++|+.++++++...+. ...++..+|.++...|++++|..
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99998876442 567889999999999999999999999865332 24588899999999999999999
Q ss_pred HHHHHHhhCCC
Q 002431 292 CYNQCLSLQPS 302 (922)
Q Consensus 292 ~~~~al~~~p~ 302 (922)
++++++++.+.
T Consensus 365 ~~~~al~~~~~ 375 (411)
T 4a1s_A 365 YAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHCCH
T ss_pred HHHHHHHHHhh
Confidence 99999998765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=203.13 Aligned_cols=226 Identities=15% Similarity=0.146 Sum_probs=146.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 7 HQMYKSGSYKQALEHSNSVYERN----PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
..+...|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|+
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC
Confidence 33445577777777777777652 34566777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (922)
+++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|++.......+.. ...|++++|+..+++++
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777766554444333 44566666666666666
Q ss_pred hhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002431 163 RIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF----PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 234 (922)
Q Consensus 163 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 234 (922)
...|.+...+. ++..+...++.++|+..+++++...|.. ..++..+|.++...|++++|+..|+++++.+|
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 66665544433 4555555566666666666665544321 34444555555555555555555555554444
|
| >3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.7e-22 Score=219.42 Aligned_cols=339 Identities=11% Similarity=0.081 Sum_probs=224.8
Q ss_pred ceeeeecCCCCC-ChhHhhhhHHhhcCCCCCeEEEEEecCCCCChH---H---HHHHHhccCceEECCCCCHHHHHHHHH
Q 002431 537 LRVGYVSSDFGN-HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTE---W---RQRTQSEAEHFVDVSAMSSDMIAKLIN 609 (922)
Q Consensus 537 ~rig~~s~~~~~-h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~i~ 609 (922)
|||.++++.+.. ++++.++..+.+.+.+. +||.+++........ . ......... +..-..+....+.+.|+
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~ 78 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSVHANIEEFDAQTAEHVR-GLNEQGFYYSGLSEFID 78 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCSCSSSEEEEHHHHHHHT-TCCSTTCCHHHHHHHHH
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCcccccccccCCcccccccc-ccccccchHHHHHHHHH
Confidence 689999876643 56778899999999888 999988764321000 0 001111111 11111345677899999
Q ss_pred hCCCeEEEcCCCcCCCCchhhhh-----cCCCc----eEEeccccCCCCCCCcccEE--Eec--CccCCcCccC-----C
Q 002431 610 EDKIQILINLNGYTKGARNEIFA-----MQPAP----IQVSYMGFPGTTGASYIDYL--VTD--EFVSPLRYAH-----I 671 (922)
Q Consensus 610 ~~~~dil~~~~~~~~~~~~~~~~-----~~~ap----vq~~~~g~~~t~g~~~~d~~--~~d--~~~~~~~~~~-----~ 671 (922)
..++||+ |++.. .++++ .+..| +...+..... .....+.++ .+| .+++++.... .
T Consensus 79 ~~~~Div-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~~S~~~~~~~~~~ 151 (413)
T 3oy2_A 79 VHKPDIV-----MIYND-PIVIGNYLLAMGKCSHRTKIVLYVDLVSK-NIRENLWWIFSHPKVVGVMAMSKCWISDICNY 151 (413)
T ss_dssp HHCCSEE-----EEEEC-HHHHHHHHHHGGGCCSCCEEEEEECCCSB-SCCGGGGGGGGCTTEEEEEESSTHHHHHHHHT
T ss_pred hcCCCEE-----EEcch-HHHHHHHHHHhccCCCCCceeeeccccch-hhHHHHHHHHhccCCceEEEcCHHHHHHHHHc
Confidence 9999999 55522 12211 11122 2222211111 111111111 122 4444544321 1
Q ss_pred -CccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCC--CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEE
Q 002431 672 -YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPE--DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALW 746 (922)
Q Consensus 672 -~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~--~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~ 746 (922)
..+++..+|+..-. ... ...|.++|+++ +.++|++++|+ .|+.+.++++|.++.++.|+.+|+
T Consensus 152 ~~~~~~~vi~ngvd~--------~~~----~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ 219 (413)
T 3oy2_A 152 GCKVPINIVSHFVDT--------KTI----YDARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVR 219 (413)
T ss_dssp TCCSCEEECCCCCCC--------CCC----TTHHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEE
T ss_pred CCCCceEEeCCCCCH--------HHH----HHHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEE
Confidence 12344444432211 001 34678889988 88999999987 599999999999999999999999
Q ss_pred EecCChhh-----HHHHHHHHHHcCCCCCc-------eEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCC
Q 002431 747 LLRFPAAG-----EMRLRAYAVAQGVQPDQ-------IIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGL 813 (922)
Q Consensus 747 ~~~~~~~~-----~~~l~~~~~~~g~~~~r-------v~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~ 813 (922)
|+|+|+.. .+.+++.+++.|+ .++ |.|.|.++.++...+|+.+|++|.|+.++| |++++|||++|+
T Consensus 220 ivG~g~~~~~~~l~~~~~~~~~~~~l-~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~ 298 (413)
T 3oy2_A 220 FLCNSHHESKFDLHSIALRELVASGV-DNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGK 298 (413)
T ss_dssp EEEECCTTCSCCHHHHHHHHHHHHTC-SCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTC
T ss_pred EEeCCcccchhhHHHHHHHHHHHcCc-ccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCC
Confidence 99988642 3789999999999 477 888899999999999999999999999988 999999999999
Q ss_pred CeeeecCCcchhhhHHHHH------------HhcCCCCcccc-CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCC
Q 002431 814 PMITLPLEKMATRVAGSLC------------LATGLGEEMIV-NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLF 880 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~------------~~~g~~~~~i~-~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 880 (922)
|||+.+...+..-+....- ...|+.+ ++. .|++++++++ ++..|++.+.+++++.++.. ...|
T Consensus 299 PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~g-l~~~~d~~~la~~i-~l~~~~~~~~~~~~~a~~~~--~~~f 374 (413)
T 3oy2_A 299 PLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGG-IEGIIDVDDLVEAF-TFFKDEKNRKEYGKRVQDFV--KTKP 374 (413)
T ss_dssp CEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCC-EEEECCHHHHHHHH-HHTTSHHHHHHHHHHHHHHH--TTSC
T ss_pred CEEEcCCCChHHHHccCcccccccccccccccccCcce-eeCCCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHH--HHhC
Confidence 9996543322222210000 0002222 332 5999999999 99999999999999999976 4469
Q ss_pred ChHHHHHHHHHHHHHHHHHHh
Q 002431 881 DTARWVKNLERSYFKMWSLHC 901 (922)
Q Consensus 881 ~~~~~~~~~e~~y~~~~~~~~ 901 (922)
+++.++++++++|+++.++..
T Consensus 375 s~~~~~~~~~~~~~~~~~~~~ 395 (413)
T 3oy2_A 375 TWDDISSDIIDFFNSLLRVES 395 (413)
T ss_dssp CHHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999987543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-21 Score=208.04 Aligned_cols=275 Identities=24% Similarity=0.315 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHH
Q 002431 137 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF----AIAWSNLAGLFMESGDLNRALQYYKEAVKL------KPTFPDAY 206 (922)
Q Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~ 206 (922)
.+...|..+...|++++|+..|+++++..|.+ ..++..++.++...|++++|+..+++++.. .+....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 44555666666666666666666666665555 244555566666666666666666655543 12223344
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 207 LNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR 285 (922)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 285 (922)
..+|.++...|++++|+..++++++..+. .. .+....++..+|.++...|+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------------~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------------------------KVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC----------------------------chHHHHHHHHHHHHHHHcCc
Confidence 55555555555555555555554443211 00 00012245555555555555
Q ss_pred --------------------HHHHHHHHHHHHhhC------CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCc-
Q 002431 286 --------------------VDEAIQCYNQCLSLQ------PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS- 338 (922)
Q Consensus 286 --------------------~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~- 338 (922)
+++|+..++++++.. +....++..+|.++...|++++|...++++++..+...
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 555555555555431 11234566667777777777777777777666543322
Q ss_pred -----hhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc--
Q 002431 339 -----APFNNLAVIYKQQGNYADAISCYNEVLRIDPLA------ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM-- 405 (922)
Q Consensus 339 -----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-- 405 (922)
.++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+..++++++..+..
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 267788888888888888888888888765443 5678888999999999999999999888775432
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 406 ----AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 406 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
..++..+|.+|...|++++|..+|++++++.++.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 4578889999999999999999999999887653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-20 Score=190.18 Aligned_cols=209 Identities=18% Similarity=0.095 Sum_probs=191.4
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
...+..++.++...|++++|+..++++++.+|.+..++..+|.++...|++++|++.++++++..|.+..++..++.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 56778888888888888888888888888888888899999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHh--cCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 002431 316 EWNMLPAAASYYKATLA--VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 393 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 393 (922)
..|++++|+.++++++. ..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999998 7788888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 002431 394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATC 444 (922)
Q Consensus 394 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 444 (922)
.++++++..|++..++..++.++...|++++|.++++++++.+|+++....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999887654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=183.92 Aligned_cols=173 Identities=23% Similarity=0.376 Sum_probs=152.9
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHH
Q 002431 268 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 347 (922)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 347 (922)
++..+|+.+|.++...|++++|++.|+++++.+|+++.++..+|.++...|++++|+..+++++...|.+..++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 34567888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 002431 348 YKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 427 (922)
Q Consensus 348 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 427 (922)
+...+++++|...+.++++.+|.+..++..+|.++..+|++++|++.|+++++.+|+++.++..+|.+|.++|++++|++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCH
Q 002431 428 SYKQALLLRPDFP 440 (922)
Q Consensus 428 ~~~~al~~~p~~~ 440 (922)
.|+++++++|+++
T Consensus 163 ~~~~al~~~p~~a 175 (184)
T 3vtx_A 163 YFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHTTHHHH
T ss_pred HHHHHHhCCccCH
Confidence 9999999888753
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-18 Score=197.42 Aligned_cols=427 Identities=12% Similarity=0.044 Sum_probs=312.2
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 002431 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD---IDLAIRYYL 91 (922)
Q Consensus 15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~ 91 (922)
..+-+..|++.+..+|.+...|..++......++++.+...|++++...|.....|...+....+.++ ++.+..+|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 34556788999999999999999999999999999999999999999999999999999999888898 999999999
Q ss_pred HHHhcCC--CcHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHh----CCCCHHHHHHHHHHHH---------Hc
Q 002431 92 VAIELRP--NFADAWSNLASAYMRKGRL--------NEAAQCCRQALAL----NPLLVDAHSNLGNLMK---------AQ 148 (922)
Q Consensus 92 ~al~~~p--~~~~~~~~la~~~~~~g~~--------~~A~~~~~~~l~~----~p~~~~~~~~la~~~~---------~~ 148 (922)
+++...| .++..|..........++. +...+.|++++.. ++.....|........ .+
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9999883 5678888887766665543 3344778887763 5667777777766544 34
Q ss_pred CCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHhc-------CCCC-----
Q 002431 149 GLVQEAYSCYLEALRIQPTF-AIAWSNLAGLFME-------------SGDLNRALQYYKEAVKL-------KPTF----- 202 (922)
Q Consensus 149 g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-------------~g~~~~A~~~~~~~l~~-------~p~~----- 202 (922)
++.+.+..+|++++.....+ ...|......-.. ..+|..|...+.+.... .|..
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 45778899999999642222 2233222211111 12334444444432111 1110
Q ss_pred --------------HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHH-HHH
Q 002431 203 --------------PDAYLNLGNVYKALG-------MPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAI-LYY 259 (922)
Q Consensus 203 --------------~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~-~~~ 259 (922)
...|......-...+ ..+.....|++++...|. ...|...+..+...|+.++|. ..|
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 123444433322222 123456778888888887 888888888888888888886 888
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------CC-----------ChHHHHhHHHHHHHc
Q 002431 260 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-----------PS-----------HPQALTNLGNIYMEW 317 (922)
Q Consensus 260 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------p~-----------~~~~~~~la~~~~~~ 317 (922)
++++...|.+...|..++......|++++|.++|++++... |. ...+|...+....+.
T Consensus 368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 88888888888888888888888888888888888888642 42 234677777777788
Q ss_pred CChhHHHHHHHHHHhc-CCCCchhhhhHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002431 318 NMLPAAASYYKATLAV-TTGLSAPFNNLAVIYKQQG-NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 395 (922)
Q Consensus 318 ~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 395 (922)
|+.+.|..+|.++++. .+.....|...+.+..+.+ +.+.|.++|+.+++..|+++..+...+......|+.+.|..+|
T Consensus 448 ~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lf 527 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLF 527 (679)
T ss_dssp HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 8888888888888877 4444566666666666654 4888888888888888888888888888888888888888888
Q ss_pred HHHHhhCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 396 IRAITIRP---TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (922)
Q Consensus 396 ~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (922)
+++++..| ....+|......-.+.|+.+.+..+++++.+..|+++.
T Consensus 528 eral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 528 ESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 88888877 35567777888888888888888888888888888654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-21 Score=206.68 Aligned_cols=267 Identities=26% Similarity=0.316 Sum_probs=139.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHHHHH
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRF----AECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFADAWS 105 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~ 105 (922)
++..|..+...|++++|+..|+++++..|.+ ..++..+|.++...|++++|+..++++++. .+....++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 3444444444444444444444444444443 233444444444444444444444444433 122233444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHHHHH
Q 002431 106 NLASAYMRKGRLNEAAQCCRQALALNPLL------VDAHSNLGNLMKAQGL--------------------VQEAYSCYL 159 (922)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~ 159 (922)
.+|.++...|++++|+..++++++..+.. ..++..+|.++...|+ +++|+..++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 44444444444444444444444432211 2244445555555555 555555555
Q ss_pred HHHhh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHH
Q 002431 160 EALRI------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF------PDAYLNLGNVYKALGMPQEAIMCYQ 227 (922)
Q Consensus 160 ~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 227 (922)
+++.. .+....++..++.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+..++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44443 12223455555666666666666666666655543221 1255666666666666666666666
Q ss_pred HHHhhCCC-------hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 228 RAVQTRPN-------AIAFGNLASTYYERGQADMAILYYKQAIGCDPR------FLEAYNNLGNALKDVGRVDEAIQCYN 294 (922)
Q Consensus 228 ~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 294 (922)
++++..+. ..++..++.++...|++++|+..+++++...+. ...++..++.++...|++++|..+++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 66554221 445666677777777777777777766644322 13466777778888888888888888
Q ss_pred HHHhhCCC
Q 002431 295 QCLSLQPS 302 (922)
Q Consensus 295 ~al~~~p~ 302 (922)
++++..+.
T Consensus 328 ~a~~~~~~ 335 (338)
T 3ro2_A 328 KHLEISRE 335 (338)
T ss_dssp HHHHC---
T ss_pred HHHHHHHh
Confidence 87776543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-19 Score=183.69 Aligned_cols=211 Identities=18% Similarity=0.115 Sum_probs=191.3
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
...+..++.++...|++++|+..++++++..|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 66778888888888888888888888888888888889999999999999999999999999999999999999999999
Q ss_pred Hc-CChhHHHHHHHHHHh--cCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 002431 316 EW-NMLPAAASYYKATLA--VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI 392 (922)
Q Consensus 316 ~~-~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 392 (922)
.. |++++|+..++++++ ..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 99 999999999999998 556667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002431 393 QDYIRAITIRP-TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (922)
Q Consensus 393 ~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (922)
..++++++..| ++..++..++.++...|+.++|..+++.+.+.+|+++.+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999999999 9999999999999999999999999999999999998776443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-19 Score=188.49 Aligned_cols=232 Identities=19% Similarity=0.284 Sum_probs=171.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHH
Q 002431 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYE----RGQADMAILYYKQAIGCDPRFLEAYNN 275 (922)
Q Consensus 200 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~ 275 (922)
|.++.+++.+|.++...|++++|+..|+++++ ..+..++..++.++.. .+++++|+.+|+++++.+ +..++..
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 79 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHL 79 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 44555666666666666666666666666655 1124556666666666 666666666666666553 5667777
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHH----cCChhHHHHHHHHHHhcCCCCchhhhhHHHH
Q 002431 276 LGNALKD----VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME----WNMLPAAASYYKATLAVTTGLSAPFNNLAVI 347 (922)
Q Consensus 276 l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 347 (922)
+|.++.. .+++++|+..|+++++.+ ++.++..+|.+|.. .+++++|+.+|+++++.. +..++..+|.+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 155 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 7777777 777777777777777653 66777777777777 777777777777777754 56677788888
Q ss_pred HHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh-
Q 002431 348 YKQ----QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD- 418 (922)
Q Consensus 348 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 418 (922)
|.. .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+..|+++++.+| +.+++.+|.+|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence 887 88888888888888876 457888999999999 9999999999999998866 7889999999999
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 419 ---SGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 419 ---~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
.+++++|+++|+++++.+|++...
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999998765433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=196.19 Aligned_cols=188 Identities=16% Similarity=0.098 Sum_probs=110.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 43 YYQLHDYDMCIARNEEALRLE----PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118 (922)
Q Consensus 43 ~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 118 (922)
+...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 344566677777777766653 3345666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002431 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198 (922)
Q Consensus 119 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (922)
+|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++..|++......++. ....|++++|+..+++++..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL-AEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHH-HHHhcCHHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666665544333332 23445555555555555555
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002431 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 199 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (922)
.|.+...+. ++..+...++.++|+..+++++..
T Consensus 174 ~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~ 206 (275)
T 1xnf_A 174 SDKEQWGWN-IVEFYLGNISEQTLMERLKADATD 206 (275)
T ss_dssp SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS
T ss_pred CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc
Confidence 554433322 344444444445555555544443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-20 Score=187.87 Aligned_cols=208 Identities=19% Similarity=0.139 Sum_probs=193.1
Q ss_pred hCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002431 28 RNPLR-TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSN 106 (922)
Q Consensus 28 ~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 106 (922)
.+|.+ +.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|++.|+++++.+|.+..++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 45554 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q 002431 107 LASAYMRKGRLNEAAQCCRQALA--LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184 (922)
Q Consensus 107 la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 184 (922)
++.++...|++++|++.++++++ ..|.+..++..+|.++...|++++|+..++++++..|.+..++..++.++...|+
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Confidence 99999999999999999999998 7788888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002431 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235 (922)
Q Consensus 185 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 235 (922)
+++|+..++++++..|.+...+..++.++...|++++|...++++++..|+
T Consensus 191 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999887
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-19 Score=185.44 Aligned_cols=229 Identities=21% Similarity=0.264 Sum_probs=148.8
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHH
Q 002431 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKE----KGDIDLAIRYYLVAIELRPNFADAW 104 (922)
Q Consensus 29 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 104 (922)
+|.++.+++.+|.++...|++++|+..|+++++ |+++.+++.+|.++.. .+++++|+.+|+++++.+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 355667777777777777777777777777776 5666777777777777 777777777777777664 56677
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 002431 105 SNLASAYMR----KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA----QGLVQEAYSCYLEALRIQPTFAIAWSNLA 176 (922)
Q Consensus 105 ~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 176 (922)
..+|.+|.. .+++++|+..|+++++.+ ++.++..+|.++.. .+++++|+..|+++++.. +..++..++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 777777777 777777777777776653 66667777777776 677777777777766654 455566666
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCChhHHHhHHHHHHH
Q 002431 177 GLFME----SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA----LGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYE 248 (922)
Q Consensus 177 ~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 248 (922)
.++.. .+++++|+..++++++. .++.++..+|.++.. .+++++|+..|+++++..+ ..++..++.++..
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHc
Confidence 66666 66666666666666654 235566666666666 6666666666666655543 4455555555555
Q ss_pred ----cCChHHHHHHHHHHHhcCCC
Q 002431 249 ----RGQADMAILYYKQAIGCDPR 268 (922)
Q Consensus 249 ----~g~~~~A~~~~~~~l~~~p~ 268 (922)
.+++++|+.+|+++++..|.
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCH
Confidence 55555555555555555544
|
| >3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=218.67 Aligned_cols=340 Identities=11% Similarity=0.081 Sum_probs=230.5
Q ss_pred ccceeeeecCCCCC---ChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHH-H------------HH--HhccCceEEC
Q 002431 535 RRLRVGYVSSDFGN---HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWR-Q------------RT--QSEAEHFVDV 596 (922)
Q Consensus 535 ~~~rig~~s~~~~~---h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~------------~~--~~~~~~~~~~ 596 (922)
++|||.+++..+.. ++++.++..+.+.+.+.++||++++.......... . .. ...+..++.+
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 80 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRI 80 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEe
Confidence 47999999988543 67778899999999888899999986533221000 0 00 0001111211
Q ss_pred CC--------CC-------------HHHHHHHHH-----hCCCeEEEcCCCcCCCCchhhhh-----cCCCceEEecccc
Q 002431 597 SA--------MS-------------SDMIAKLIN-----EDKIQILINLNGYTKGARNEIFA-----MQPAPIQVSYMGF 645 (922)
Q Consensus 597 ~~--------~~-------------~~~~~~~i~-----~~~~dil~~~~~~~~~~~~~~~~-----~~~apvq~~~~g~ 645 (922)
+. .. ...+.+.++ ..++||+ |+|+....+++ ....|+.++..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii-----~~~~~~~~~~~~~~~~~~~~~~v~~~h~~ 155 (439)
T 3fro_A 81 GGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVV-----HFHDWHTVFAGALIKKYFKIPAVFTIHRL 155 (439)
T ss_dssp ESGGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEE-----EEESGGGHHHHHHHHHHHCCCEEEEESCC
T ss_pred cchhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEE-----EecchhhhhhHHHHhhccCCCEEEEeccc
Confidence 11 00 122233333 5699999 66654333222 2347888876554
Q ss_pred CCC---------CCCC---ccc--------EEEecCccCCcCccC--------CCccceeecCCccccCCCccccccCCC
Q 002431 646 PGT---------TGAS---YID--------YLVTDEFVSPLRYAH--------IYSEKLVHVPHCYFVNDYKQKNMDVLD 697 (922)
Q Consensus 646 ~~t---------~g~~---~~d--------~~~~d~~~~~~~~~~--------~~~e~~~~lp~~~~~~~~~~~~~~~~~ 697 (922)
... .++. ... +..+|.+++++.... ...+++..+|++.-.....+. ..+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~---~~~ 232 (439)
T 3fro_A 156 NKSKLPAFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNES---YLT 232 (439)
T ss_dssp CCCCEEHHHHHHTTCGGGCCSSEECHHHHHHHHCSEEEESCHHHHHHTHHHHGGGTTSEEECCCCCCTTTSCGG---GSC
T ss_pred ccccCchHHhCccccccccccceeeHhhhhhhhccEEEecCHHHHHHHhhhhhhcCCceeecCCCCCchhcCcc---ccc
Confidence 321 0111 000 013566666655311 134566666664322111110 000
Q ss_pred C----CCCCCcCCCCCCCCcEEEEecCCC---CCCCHHHHHHHHHHHhhC--CCeEEEEecCChhhH--HHHHHHHHHcC
Q 002431 698 P----NCQPKRSDYGLPEDKFIFACFNQL---YKMDPEIFNTWCNILRRV--PNSALWLLRFPAAGE--MRLRAYAVAQG 766 (922)
Q Consensus 698 ~----~~~~~r~~~~l~~~~~~~~~~~~~---~K~~~~~~~~~~~il~~~--p~~~l~~~~~~~~~~--~~l~~~~~~~g 766 (922)
+ .....|+++|++++ ++++.++|+ .|+.+.++++|.++.++. |+.+|+|+|+|+. . +.+++.+.+.|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~-~~~~~l~~~~~~~~ 310 (439)
T 3fro_A 233 GSRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDP-ELEGWARSLEEKHG 310 (439)
T ss_dssp SCHHHHHHHHHHHHTCCSC-EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCH-HHHHHHHHHHHHCT
T ss_pred chhhhhHHHHHHHcCCCCC-cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCCh-hHHHHHHHHHhhcC
Confidence 0 11237888999888 888888865 499999999999998877 9999999999875 4 78889898887
Q ss_pred CCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--
Q 002431 767 VQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-- 843 (922)
Q Consensus 767 ~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~-- 843 (922)
+.|.|.|.++.++...+|+.+|++|.|+.++| |++++|||++|+|||+.+......-+. -| .+ +++
T Consensus 311 ---~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~------~~-~g-~~~~~ 379 (439)
T 3fro_A 311 ---NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIIT------NE-TG-ILVKA 379 (439)
T ss_dssp ---TEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCC------TT-TC-EEECT
T ss_pred ---CEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCCCcceeEE------cC-ce-EEeCC
Confidence 68899999999999999999999999999999 999999999999999765543333221 14 55 444
Q ss_pred CCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 844 NSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 844 ~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
.|++++++++.++.. |++.+++++++.++... .|+++.++++++++|+++.+
T Consensus 380 ~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~---~~s~~~~~~~~~~~~~~~~~ 432 (439)
T 3fro_A 380 GDPGELANAILKALELSRSDLSKFRENCKKRAM---SFSWEKSAERYVKAYTGSID 432 (439)
T ss_dssp TCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH---TSCHHHHHHHHHHHHHTCSC
T ss_pred CCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh---hCcHHHHHHHHHHHHHHHHH
Confidence 499999999999999 99999999999998763 29999999999999988764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-18 Score=195.82 Aligned_cols=421 Identities=10% Similarity=0.017 Sum_probs=328.7
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 002431 49 YDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR---LNEAAQCCR 125 (922)
Q Consensus 49 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~ 125 (922)
..+-+..|++.+..+|.+...|..++....+.++++.+...|++++...|.....|...+....+.|+ ++.+..+|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 45667788999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHhCC--CCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHhh----CCCcHHHHHHHHHHHH---------Hc
Q 002431 126 QALALNP--LLVDAHSNLGNLMKAQGLV--------QEAYSCYLEALRI----QPTFAIAWSNLAGLFM---------ES 182 (922)
Q Consensus 126 ~~l~~~p--~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~----~p~~~~~~~~la~~~~---------~~ 182 (922)
+++...| .+++.|..........++. +...+.|++++.. ++.+..+|........ .+
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9999884 6888888888777666554 3344788888863 6667778887776644 34
Q ss_pred CCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHH-------------HcCChHHHHHHHHHHHhh-------C--------
Q 002431 183 GDLNRALQYYKEAVKLKPTFPD-AYLNLGNVYK-------------ALGMPQEAIMCYQRAVQT-------R-------- 233 (922)
Q Consensus 183 g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~-------------~~g~~~~A~~~~~~~~~~-------~-------- 233 (922)
++.+.+..+|++++........ .|......-. ...+++.|...+.+.... .
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 4578899999999975323222 2222111111 112344455555442211 1
Q ss_pred ----C-----C---hhHHHhHHHHHHHcC-------ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHH
Q 002431 234 ----P-----N---AIAFGNLASTYYERG-------QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI-QCY 293 (922)
Q Consensus 234 ----p-----~---~~~~~~l~~~~~~~g-------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~ 293 (922)
| . ...|..........+ ..+.....|++++...|.+.+.|+..+..+...|+.++|. ++|
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 0 123333333322221 1244567899999999999999999999999999999997 999
Q ss_pred HHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcC-----------CC-----------CchhhhhHHHHHHHc
Q 002431 294 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-----------TG-----------LSAPFNNLAVIYKQQ 351 (922)
Q Consensus 294 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----------~~-----------~~~~~~~la~~~~~~ 351 (922)
++++...|.+...+..++......|++++|..+|++++... |. ...+|...+....+.
T Consensus 368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999998752 32 345788889998899
Q ss_pred CCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 002431 352 GNYADAISCYNEVLRI-DPLAADGLVNRGNTYKEIGR-VTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429 (922)
Q Consensus 352 g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 429 (922)
|+.+.|..+|.++++. .+.....+...+.+..+.++ .+.|.++|+++++..|+++..+...+......|+.+.|..+|
T Consensus 448 ~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lf 527 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLF 527 (679)
T ss_dssp HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999987 55566778777777777654 999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCC---CHHHHHHHHHhhcccCChhhHhHHHHHHHHH
Q 002431 430 KQALLLRPD---FPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 469 (922)
Q Consensus 430 ~~al~~~p~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 469 (922)
+++++..|+ ....+..++..-...|+.+.+.++.+++.+.
T Consensus 528 eral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 528 ESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999884 4566777777777778877777777666653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=212.15 Aligned_cols=215 Identities=19% Similarity=0.177 Sum_probs=186.8
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 47 HDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI-DLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCR 125 (922)
Q Consensus 47 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 125 (922)
+++++++..+++.....|.++.+++.+|.++...|++ ++|++.|+++++.+|++..++..+|.+|...|++++|+..|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4467888888888888888888888888888888888 888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc--------CCHHHH
Q 002431 126 QALALNPLLVDAHSNLGNLMKAQ---------GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES--------GDLNRA 188 (922)
Q Consensus 126 ~~l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A 188 (922)
++++.+|+ ..++..+|.++... |++++|+..|+++++.+|++..+|..+|.++... |++++|
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 88888887 68888888888888 8888888888888888888888888888888888 888999
Q ss_pred HHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHH
Q 002431 189 LQYYKEAVKLKP---TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQA 262 (922)
Q Consensus 189 ~~~~~~~l~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 262 (922)
+..|+++++.+| +++.++..+|.++...|++++|+..|+++++..|+ ..++..++.++...|++++|+..+.+.
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999988888 88888999999999999999999999999888887 778888888888888888888776654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-19 Score=180.39 Aligned_cols=207 Identities=24% Similarity=0.192 Sum_probs=143.4
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002431 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLA 108 (922)
Q Consensus 29 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 108 (922)
+|.++.+++.+|.++...|++++|++.++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q 002431 109 SAYMRK-GRLNEAAQCCRQALA--LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 185 (922)
Q Consensus 109 ~~~~~~-g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 185 (922)
.++... |++++|+..++++++ ..|.+..++..+|.++...|++++|+..++++++..|.+..++..++.++...|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 777777 777777777777776 44555666666677777777777777777776666666666666666666666666
Q ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002431 186 NRALQYYKEAVKLKP-TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235 (922)
Q Consensus 186 ~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 235 (922)
++|...++++++..| .+...+..++.++...|+.++|..+++.+.+..|+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 666666666666666 66666666666666666666666666666655555
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.5e-20 Score=178.40 Aligned_cols=171 Identities=22% Similarity=0.287 Sum_probs=113.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 111 (922)
++.+++.+|.++..+|++++|++.|+++++.+|+++.++..+|.+|...|++++|+..+.+++...|++..++..++.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 191 (922)
Q Consensus 112 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 191 (922)
...+++++|...+.++++.+|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.+|...|++++|+..
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCCCC
Q 002431 192 YKEAVKLKPTF 202 (922)
Q Consensus 192 ~~~~l~~~p~~ 202 (922)
|+++++.+|++
T Consensus 164 ~~~al~~~p~~ 174 (184)
T 3vtx_A 164 FKKALEKEEKK 174 (184)
T ss_dssp HHHHHHTTHHH
T ss_pred HHHHHhCCccC
Confidence 66666665543
|
| >2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-22 Score=219.55 Aligned_cols=326 Identities=12% Similarity=0.122 Sum_probs=214.0
Q ss_pred CChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC--------CCC-----HHHHHHHHHhCCCe
Q 002431 548 NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS--------AMS-----SDMIAKLINEDKIQ 614 (922)
Q Consensus 548 ~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-----~~~~~~~i~~~~~d 614 (922)
.++++.++..+.+.+.+.++||++++...... ... ......+..+. ... ...+.+.+++.++|
T Consensus 26 ~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~--~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D 101 (394)
T 2jjm_A 26 VGGSGVVGTELGKQLAERGHEIHFITSGLPFR--LNK--VYPNIYFHEVTVNQYSVFQYPPYDLALASKMAEVAQRENLD 101 (394)
T ss_dssp -CHHHHHHHHHHHHHHHTTCEEEEECSSCC------C--CCTTEEEECCCCC----CCSCCHHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCc--ccc--cCCceEEEecccccccccccccccHHHHHHHHHHHHHcCCC
Confidence 35677888899999988889999998643211 000 00000111111 001 24578888999999
Q ss_pred EEEcCCCcCCCCch----hhhhcC----CCceEEeccccCC-CCCCC-ccc------EEEecCccCCcCccCCC------
Q 002431 615 ILINLNGYTKGARN----EIFAMQ----PAPIQVSYMGFPG-TTGAS-YID------YLVTDEFVSPLRYAHIY------ 672 (922)
Q Consensus 615 il~~~~~~~~~~~~----~~~~~~----~apvq~~~~g~~~-t~g~~-~~d------~~~~d~~~~~~~~~~~~------ 672 (922)
|+ |+++... .+++.+ ..|+.++..+... ..+.. ... +..+|.+++++......
T Consensus 102 vv-----~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~ 176 (394)
T 2jjm_A 102 IL-----HVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAVSHSLINETHELVK 176 (394)
T ss_dssp EE-----EECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTTTTCTTTHHHHHHHHHHSSEEEESCHHHHHHHHHHTC
T ss_pred EE-----EEcchhHHHHHHHHHHHhhcCCCCEEEEEecCcccccCCCHHHHHHHHHHHhhCCEEEECCHHHHHHHHHhhC
Confidence 99 4443221 222221 3788877655311 01111 110 11345566665532111
Q ss_pred -ccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEec
Q 002431 673 -SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLR 749 (922)
Q Consensus 673 -~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~ 749 (922)
.+++..+|++.-... ..+......|+++|++++.+++++++++ .|+.+.++++|.++.++ ++.+|+|+|
T Consensus 177 ~~~~~~vi~ngv~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~~~~l~i~G 248 (394)
T 2jjm_A 177 PNKDIQTVYNFIDERV-------YFKRDMTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAKLLLVG 248 (394)
T ss_dssp CSSCEEECCCCCCTTT-------CCCCCCHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHHS-SCCEEEEEC
T ss_pred CcccEEEecCCccHHh-------cCCcchHHHHHHcCCCCCCeEEEEeeccccccCHHHHHHHHHHHHhh-CCCEEEEEC
Confidence 245555554321111 1111122367789998888888888876 49999999999998776 668999999
Q ss_pred CChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 750 FPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
+|+. .+.+++.+.++|+ .++|.|.|. ..+...+|+.+|++|.|+.++| |++++|||++|+|||+.+......-+.
T Consensus 249 ~g~~-~~~l~~~~~~~~l-~~~v~~~g~--~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~~~~~~e~v~ 324 (394)
T 2jjm_A 249 DGPE-FCTILQLVKNLHI-EDRVLFLGK--QDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQ 324 (394)
T ss_dssp CCTT-HHHHHHHHHTTTC-GGGBCCCBS--CSCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEEECCTTSTTTCC
T ss_pred CchH-HHHHHHHHHHcCC-CCeEEEeCc--hhhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEEecCCChHHHhh
Confidence 9876 7899999999999 589999995 5677888999999999998888 999999999999999766543333221
Q ss_pred HHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHhcC
Q 002431 829 GSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHCSG 903 (922)
Q Consensus 829 ~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~~~ 903 (922)
. |-.+ +++ .|++++++++.++..|++.+.+++++.++.. ...|+++.++++++++|+++..+...|
T Consensus 325 ~------~~~g-~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~ 392 (394)
T 2jjm_A 325 H------GDTG-YLCEVGDTTGVADQAIQLLKDEELHRNMGERARESV--YEQFRSEKIVSQYETIYYDVLRDDKNG 392 (394)
T ss_dssp B------TTTE-EEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHSCHHHHHHHHHHHHHHTC------
T ss_pred c------CCce-EEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHHHhhhhcc
Confidence 0 2233 444 3899999999999999999999999998876 234999999999999999988765544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=192.63 Aligned_cols=220 Identities=9% Similarity=-0.032 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHc
Q 002431 16 KQALEHSNSVYERNPLRTDNLLLLGAIYYQ-------LHDY-------DMCIARNEEALR-LEPRFAECYGNMANAWKEK 80 (922)
Q Consensus 16 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 80 (922)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ .+|++..+|..+|..+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 677888888888888888888888877763 4664 788888888887 5788888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 002431 81 GDIDLAIRYYLVAIELRPNFAD-AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA-QGLVQEAYSCY 158 (922)
Q Consensus 81 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~ 158 (922)
|++++|...|+++++..|.++. +|..++.++.+.|++++|...|+++++..|....++...+.+... .|++++|...|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888887777765 778888888888888888888888887777777776655555433 57788888888
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002431 159 LEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL---KP-TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 234 (922)
Q Consensus 159 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 234 (922)
+++++.+|+++.+|..++..+...|++++|...|++++.. .| +...++..++..+...|+.++|..+++++++..|
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 8888777777777777777777778888888888887774 33 2556777777777777777777777777777777
Q ss_pred C
Q 002431 235 N 235 (922)
Q Consensus 235 ~ 235 (922)
+
T Consensus 273 ~ 273 (308)
T 2ond_A 273 E 273 (308)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-19 Score=189.72 Aligned_cols=250 Identities=11% Similarity=0.083 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHc
Q 002431 118 NEAAQCCRQALALNPLLVDAHSNLGNLMKA-------QGLV-------QEAYSCYLEALR-IQPTFAIAWSNLAGLFMES 182 (922)
Q Consensus 118 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 182 (922)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|...|+++++ ..|++..+|..++.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 455556666666666666666666555542 3554 666666666666 4666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHH-cCChHHHHHHH
Q 002431 183 GDLNRALQYYKEAVKLKPTFPD-AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYE-RGQADMAILYY 259 (922)
Q Consensus 183 g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~~~A~~~~ 259 (922)
|++++|...|+++++..|.++. +|..++.++...|++++|+..|+++++..|. ...+...+..... .|++++|...|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666666666654 6666666666666666666666666666554 4444433333222 56777777777
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CC-CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCC
Q 002431 260 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL---QP-SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 335 (922)
Q Consensus 260 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 335 (922)
+++++.+|++..+|..++..+...|++++|..+|+++++. .| ....+|..++..+...|++++|..+++++++..|
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 7777777777777777777777777777777777777764 33 2455666666666667777777777777777666
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 002431 336 GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379 (922)
Q Consensus 336 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 379 (922)
++..... ++.+ ..-.+.+.++|+++..+..+|
T Consensus 273 ~~~~~~~-~~~~-----------~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 273 EEYEGKE-TALL-----------VDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp TTTSSCH-HHHH-----------HTTTCBTTBCSSCHHHHHTTT
T ss_pred cccccch-HHHH-----------HHHHHhcccCCCCHHHHHhcC
Confidence 6443321 1111 111144556677776666555
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.4e-20 Score=208.40 Aligned_cols=207 Identities=19% Similarity=0.256 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHh
Q 002431 254 MAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV-DEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 332 (922)
Q Consensus 254 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 332 (922)
+++..+++.....|....+++.+|.++...|++ ++|++.|+++++.+|+++.++..+|.+|...|++++|+..|+++++
T Consensus 86 ~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 165 (474)
T 4abn_A 86 KTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT 165 (474)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333334444444444444444444444444444 4444444444444444444444444444444444444444444444
Q ss_pred cCCCCchhhhhHHHHHHHc---------CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh--------CCHHHHHHHH
Q 002431 333 VTTGLSAPFNNLAVIYKQQ---------GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI--------GRVTDAIQDY 395 (922)
Q Consensus 333 ~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------g~~~~A~~~~ 395 (922)
.+|+ ..++..+|.++... |++++|+..|+++++++|+++.+++.+|.++... |++++|+..|
T Consensus 166 ~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~ 244 (474)
T 4abn_A 166 HCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAY 244 (474)
T ss_dssp TCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 4444 34444444444444 4444444444444444444444444444444444 4444444444
Q ss_pred HHHHhhCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhH
Q 002431 396 IRAITIRP---TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDR 461 (922)
Q Consensus 396 ~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 461 (922)
+++++++| +++.+++.+|.+|...|++++|++.|+++++++|+++.++.++...+...++++++..
T Consensus 245 ~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 245 AQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 4444444444444444444444444444444444444444444444444444444443
|
| >2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-21 Score=214.07 Aligned_cols=337 Identities=12% Similarity=0.067 Sum_probs=220.0
Q ss_pred CCcccceeeeecCCCCC--ChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC--------CCC-
Q 002431 532 GGLRRLRVGYVSSDFGN--HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS--------AMS- 600 (922)
Q Consensus 532 ~~~~~~rig~~s~~~~~--h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~- 600 (922)
...++|||.++++.+.. +++..++..+.+.+.+.++||++++....... ... +......++.++ .+.
T Consensus 16 ~~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 93 (406)
T 2gek_A 16 PRGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVK-LPD-YVVSGGKAVPIPYNGSVARLRFGP 93 (406)
T ss_dssp -----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSC-CCT-TEEECCCCC------------CCH
T ss_pred cCCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCcccc-CCc-ccccCCcEEeccccCCcccccccH
Confidence 45678999999987643 45557888888888888899999987644321 000 000000111111 111
Q ss_pred --HHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhc-CCCceEEeccccCCCCCC-C----cc--cEEEecCccCCcCccC
Q 002431 601 --SDMIAKLINEDKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPGTTGA-S----YI--DYLVTDEFVSPLRYAH 670 (922)
Q Consensus 601 --~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~-~~apvq~~~~g~~~t~g~-~----~~--d~~~~d~~~~~~~~~~ 670 (922)
...+.+.|++.++||++-........ ..++.+ ...|+.++..+....... . .+ -+..+|.+++++....
T Consensus 94 ~~~~~l~~~l~~~~~Dii~~~~~~~~~~-~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~ 172 (406)
T 2gek_A 94 ATHRKVKKWIAEGDFDVLHIHEPNAPSL-SMLALQAAEGPIVATFHTSTTKSLTLSVFQGILRPYHEKIIGRIAVSDLAR 172 (406)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCSSSH-HHHHHHHEESSEEEEECCCCCSHHHHHHHHSTTHHHHTTCSEEEESSHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEECCccchHH-HHHHHHhcCCCEEEEEcCcchhhhhHHHHHHHHHHHHhhCCEEEECCHHHH
Confidence 25688889999999996544333221 111222 246888776553221110 0 00 0112344444443311
Q ss_pred C-----C-ccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC---CCCCHHHHHHHHHHHhhCC
Q 002431 671 I-----Y-SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL---YKMDPEIFNTWCNILRRVP 741 (922)
Q Consensus 671 ~-----~-~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~---~K~~~~~~~~~~~il~~~p 741 (922)
. + .+++ .+|+..-. ....+. ....+++++.+++++++++ .|+.+.++++|.++.++.|
T Consensus 173 ~~~~~~~~~~~~-vi~~~v~~------~~~~~~------~~~~~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~ 239 (406)
T 2gek_A 173 RWQMEALGSDAV-EIPNGVDV------ASFADA------PLLDGYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARFP 239 (406)
T ss_dssp HHHHHHHSSCEE-ECCCCBCH------HHHHTC------CCCTTCSCSSCEEEEESCTTSGGGCHHHHHHHHHHHHTTST
T ss_pred HHHHHhcCCCcE-EecCCCCh------hhcCCC------chhhhccCCCeEEEEEeeeCccccCHHHHHHHHHHHHHHCC
Confidence 1 1 2233 44432211 001011 1112344455677777777 5999999999999999999
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCC-CCC-hhHHHHHHHcCCCeeeec
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL-CNA-HTTGTDILWAGLPMITLP 819 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~-~~g-~~t~~eal~~g~Pvv~~~ 819 (922)
+.+|+|+|.++. +.+++.++++ .++|.|.|.++..+...+|+.+|++|.|+. ++| |++++|||++|+|||+.+
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~---~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~ 314 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDL---AGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASD 314 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGG---GGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEECC
T ss_pred CeEEEEEcCCcH--HHHHHHHHhc---cCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEEEec
Confidence 999999999875 7788877766 489999999999999999999999999975 788 999999999999999765
Q ss_pred CCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 002431 820 LEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 897 (922)
Q Consensus 820 ~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 897 (922)
...+..- + .-|..+ +++ .|++++++++.++..|++.+.+++++.++... .|+++.++++++++|++++
T Consensus 315 ~~~~~e~-----i-~~~~~g-~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~---~~s~~~~~~~~~~~~~~~~ 384 (406)
T 2gek_A 315 LDAFRRV-----L-ADGDAG-RLVPVDDADGMAAALIGILEDDQLRAGYVARASERVH---RYDWSVVSAQIMRVYETVS 384 (406)
T ss_dssp CHHHHHH-----H-TTTTSS-EECCTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGG---GGBHHHHHHHHHHHHHHHC
T ss_pred CCcHHHH-----h-cCCCce-EEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHH
Confidence 4322221 2 114555 555 79999999999999999999999999998763 5999999999999999887
Q ss_pred HH
Q 002431 898 SL 899 (922)
Q Consensus 898 ~~ 899 (922)
++
T Consensus 385 ~~ 386 (406)
T 2gek_A 385 GA 386 (406)
T ss_dssp CT
T ss_pred hh
Confidence 53
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-20 Score=196.87 Aligned_cols=371 Identities=13% Similarity=0.119 Sum_probs=158.1
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRY 89 (922)
Q Consensus 10 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 89 (922)
-+.|++++|.+.++++ +++.+|..+|.++.+.|++++|++.|.++ .++..+..++..+...|++++|+.+
T Consensus 14 ~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4557788888888887 23458888888888888888888888653 4556778888888888888888888
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 002431 90 YLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 169 (922)
Q Consensus 90 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 169 (922)
++.+.+..++ +.+...++.+|.+.|+++++.++++. | +..++..+|..+...|++++|...|.++
T Consensus 84 l~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 84 LQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------
T ss_pred HHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 8877775433 66777788888888888887776642 3 3457888888888888888888888765
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHc
Q 002431 170 IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYER 249 (922)
Q Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~ 249 (922)
..|..++.++.+.|++++|++.++++ +++.+|...+.++...|+++.|..+...+. ..| .-...++..|.+.
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~a--d~l~~lv~~Yek~ 220 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHA--DELEELINYYQDR 220 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCH--HHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCH--hhHHHHHHHHHHC
Confidence 35777888888888888888888877 357778888888888888888866655422 333 3344577777778
Q ss_pred CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCC-----CChHHHHhHHHHHHHcCChhH
Q 002431 250 GQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV--GRVDEAIQCYNQCLSLQP-----SHPQALTNLGNIYMEWNMLPA 322 (922)
Q Consensus 250 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~~~~~~ 322 (922)
|++++|+.+++++++.++.....+..++.++.+- ++..+.++.|...+.+.| .+...|..+..+|.+.++++.
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 8888888888888877777777777777777654 345555555555444445 556667777777777777777
Q ss_pred HHHHHHHHHhc------------CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHH--ccCCCCHHHHHHHHHHHHHhCCH
Q 002431 323 AASYYKATLAV------------TTGLSAPFNNLAVIYKQQGNYADAISCYNEVL--RIDPLAADGLVNRGNTYKEIGRV 388 (922)
Q Consensus 323 A~~~~~~a~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~g~~ 388 (922)
|.....+.... .+.+.+.++.....|. +....++..+..++ ++++ ......+.+.|..
T Consensus 301 A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~------~r~v~~~~~~~~l 372 (449)
T 1b89_A 301 AIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDH------TRAVNYFSKVKQL 372 (449)
T ss_dssp HHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCH------HHHHHHHHHTTCT
T ss_pred HHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCc------HHHHHHHHHcCCc
Confidence 76655443322 3445555555555554 22333344444444 2222 1112233444454
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHH
Q 002431 389 TDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423 (922)
Q Consensus 389 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 423 (922)
.-...+++.+.. -++..+--.+-.+|....+++
T Consensus 373 ~l~~~yl~~v~~--~n~~~vnealn~l~ieeed~~ 405 (449)
T 1b89_A 373 PLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQ 405 (449)
T ss_dssp TTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHhhhhHH
Confidence 444444433332 233344444555555555554
|
| >2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-19 Score=193.35 Aligned_cols=302 Identities=11% Similarity=0.040 Sum_probs=200.6
Q ss_pred cceeeeecCC--------C------CCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCCH
Q 002431 536 RLRVGYVSSD--------F------GNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSS 601 (922)
Q Consensus 536 ~~rig~~s~~--------~------~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (922)
+|||.+++.. + ..+++..++..+.+.+.+.++||.+++........ ....-......
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~---------~~~~~~~~~~~ 73 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGR---------PGLTVVPAGEP 73 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCS---------TTEEECSCCSH
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC---------CcceeccCCcH
Confidence 4899999988 2 23556688888999988888999999876433210 11111222234
Q ss_pred HHHHHHHHhCCCeEEEcCCCcCCCCchhhhhc--CCCceEEeccccCCCCCCCcccEEEecCccCCcCccCC-C--ccce
Q 002431 602 DMIAKLINEDKIQILINLNGYTKGARNEIFAM--QPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHI-Y--SEKL 676 (922)
Q Consensus 602 ~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~--~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~-~--~e~~ 676 (922)
..+.+.+++.++||+ |+++....++.. ...| .++..+...... .+|.+++++..... + .+++
T Consensus 74 ~~l~~~l~~~~~Dvi-----~~~~~~~~~~~~~~~~~p-v~~~h~~~~~~~-------~~d~ii~~S~~~~~~~~~~~~~ 140 (342)
T 2iuy_A 74 EEIERWLRTADVDVV-----HDHSGGVIGPAGLPPGTA-FISSHHFTTRPV-------NPVGCTYSSRAQRAHCGGGDDA 140 (342)
T ss_dssp HHHHHHHHHCCCSEE-----EECSSSSSCSTTCCTTCE-EEEEECSSSBCS-------CCTTEEESCHHHHHHTTCCTTS
T ss_pred HHHHHHHHhcCCCEE-----EECCchhhHHHHhhcCCC-EEEecCCCCCcc-------cceEEEEcCHHHHHHHhcCCce
Confidence 588999999999999 444433222222 3357 555544432111 16666666554221 1 2233
Q ss_pred eecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhh
Q 002431 677 VHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG 754 (922)
Q Consensus 677 ~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~ 754 (922)
..+|+. .+.. ...+... ++++ ..+++.++|+ .|+.+.+++++.++ +.+|+|+|.|+.
T Consensus 141 ~vi~ng------vd~~--~~~~~~~------~~~~-~~~i~~vG~~~~~Kg~~~li~a~~~~-----~~~l~i~G~g~~- 199 (342)
T 2iuy_A 141 PVIPIP------VDPA--RYRSAAD------QVAK-EDFLLFMGRVSPHKGALEAAAFAHAC-----GRRLVLAGPAWE- 199 (342)
T ss_dssp CBCCCC------BCGG--GSCCSTT------CCCC-CSCEEEESCCCGGGTHHHHHHHHHHH-----TCCEEEESCCCC-
T ss_pred EEEcCC------CChh--hcCcccc------cCCC-CCEEEEEeccccccCHHHHHHHHHhc-----CcEEEEEeCccc-
Confidence 333332 2111 1111111 1222 2345556654 69999999999886 689999999875
Q ss_pred HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCC----------CCC-hhHHHHHHHcCCCeeeecCCcc
Q 002431 755 EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL----------CNA-HTTGTDILWAGLPMITLPLEKM 823 (922)
Q Consensus 755 ~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~----------~~g-~~t~~eal~~g~Pvv~~~~~~~ 823 (922)
.+.+++.++++| ++|+|+|.++..+...+|+.+|+++.|+. ++| |++++|||++|+|||+.+....
T Consensus 200 ~~~l~~~~~~~~---~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~ 276 (342)
T 2iuy_A 200 PEYFDEITRRYG---STVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCL 276 (342)
T ss_dssp HHHHHHHHHHHT---TTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTH
T ss_pred HHHHHHHHHHhC---CCEEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCCh
Confidence 788888888877 79999999999999999999999999998 788 9999999999999997665433
Q ss_pred hhhhHHHHHHhc-CCCCccccC-CHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 002431 824 ATRVAGSLCLAT-GLGEEMIVN-SMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899 (922)
Q Consensus 824 ~~r~~~~~~~~~-g~~~~~i~~-~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 899 (922)
..-+ ... |..+ ++++ |.+++++++.++.+ ....++..++ .|+++.++++++++|+++.++
T Consensus 277 ~e~~-----~~~~~~~g-~~~~~d~~~l~~~i~~l~~----~~~~~~~~~~------~~s~~~~~~~~~~~~~~~~~~ 338 (342)
T 2iuy_A 277 AEIV-----PSVGEVVG-YGTDFAPDEARRTLAGLPA----SDEVRRAAVR------LWGHVTIAERYVEQYRRLLAG 338 (342)
T ss_dssp HHHG-----GGGEEECC-SSSCCCHHHHHHHHHTSCC----HHHHHHHHHH------HHBHHHHHHHHHHHHHHHHTT
T ss_pred HHHh-----cccCCCce-EEcCCCHHHHHHHHHHHHH----HHHHHHHHHH------hcCHHHHHHHHHHHHHHHHcc
Confidence 3222 110 3344 5555 99999999999886 2233333322 399999999999999998753
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.5e-20 Score=213.09 Aligned_cols=176 Identities=24% Similarity=0.422 Sum_probs=164.1
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhh
Q 002431 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN 343 (922)
Q Consensus 264 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 343 (922)
+..|++.+++.++|.++.++|++++|++.|+++++++|++..+++++|.+|.+.|++++|+..|+++++++|++..++++
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34688889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHH
Q 002431 344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423 (922)
Q Consensus 344 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 423 (922)
+|.++..+|++++|++.|+++++++|+++.+++++|.++..+|++++|++.|+++++++|+++.++.++|.++..+|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCC
Q 002431 424 AAIKSYKQALLLRPDF 439 (922)
Q Consensus 424 ~A~~~~~~al~~~p~~ 439 (922)
+|.+.|++++++.|+.
T Consensus 163 ~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 163 DYDERMKKLVSIVADQ 178 (723)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhH
Confidence 9999999999886653
|
| >2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-21 Score=211.96 Aligned_cols=329 Identities=13% Similarity=0.090 Sum_probs=215.7
Q ss_pred ceeeeecCCC-CCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCC--CC--------HHHHH
Q 002431 537 LRVGYVSSDF-GNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA--MS--------SDMIA 605 (922)
Q Consensus 537 ~rig~~s~~~-~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~ 605 (922)
|||.+++..+ ..+++..++..+.+.+.+.++||++++....... .+ ...++.++. .. ...+.
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~--~~-----~~~v~~~~~~~~~~~~~~~~~~~~l~ 73 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDC--PK-----AFELIQVPVKSHTNHGRNAEYYAWVQ 73 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCC--CT-----TCEEEECCCCCSSHHHHHHHHHHHHH
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEEEEecCCCCCC--CC-----CcEEEEEccCcccchhhHHHHHHHHH
Confidence 6899998875 4466778888999988888899999886532211 11 122333322 21 23577
Q ss_pred HHHHhCCCeEEEcCCCcCCCCchhh---hhcCCC--ceEEeccccCCCCCCCc------cc---EE--EecCccCCcCcc
Q 002431 606 KLINEDKIQILINLNGYTKGARNEI---FAMQPA--PIQVSYMGFPGTTGASY------ID---YL--VTDEFVSPLRYA 669 (922)
Q Consensus 606 ~~i~~~~~dil~~~~~~~~~~~~~~---~~~~~a--pvq~~~~g~~~t~g~~~------~d---~~--~~d~~~~~~~~~ 669 (922)
+.|++.++||++ ++.....+ +..+.. |+..+..+.... .... +. +. .+|.+++++...
T Consensus 74 ~~i~~~~~Dvv~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~ 147 (374)
T 2iw1_A 74 NHLKEHPADRVV-----GFNKMPGLDVYFAADVCYAEKVAQEKGFLYR-LTSRYRHYAAFERATFEQGKSTKLMMLTDKQ 147 (374)
T ss_dssp HHHHHSCCSEEE-----ESSCCTTCSEEECCSCCHHHHHHHHCCHHHH-TSHHHHHHHHHHHHHHSTTCCCEEEESCHHH
T ss_pred HHHhccCCCEEE-----EecCCCCceeeeccccccceeeeecccchhh-hcHHHHHHHHHHHHHhhccCCcEEEEcCHHH
Confidence 888999999994 44332221 111111 111111111100 0000 00 00 245555555431
Q ss_pred C--------CCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhh
Q 002431 670 H--------IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRR 739 (922)
Q Consensus 670 ~--------~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~ 739 (922)
. ...+++..+|+..-..... +....+.....|+++|++++.+++++++++ .|+.+.++++|.++.++
T Consensus 148 ~~~~~~~~~~~~~~~~vi~ngv~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~ 224 (374)
T 2iw1_A 148 IADFQKHYQTEPERFQILPPGIYPDRKY---SEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPES 224 (374)
T ss_dssp HHHHHHHHCCCGGGEEECCCCCCGGGSG---GGSCTTHHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHH
T ss_pred HHHHHHHhCCChhheEEecCCcCHHhcC---cccchhHHHHHHHHhCCCCCCeEEEEeccchhhcCHHHHHHHHHHhHhc
Confidence 1 1134555555433211110 000000011267889999888888888876 59999999999988776
Q ss_pred -CCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeee
Q 002431 740 -VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMIT 817 (922)
Q Consensus 740 -~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~ 817 (922)
.|+.+|+++|.|+ .+.+++.++++|+ .++|.|+|. .++...+|+.+|+++.|+.++| |++++|||++|+|||+
T Consensus 225 ~~~~~~l~i~G~g~--~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~ 299 (374)
T 2iw1_A 225 LRHNTLLFVVGQDK--PRKFEALAEKLGV-RSNVHFFSG--RNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLT 299 (374)
T ss_dssp HHHTEEEEEESSSC--CHHHHHHHHHHTC-GGGEEEESC--CSCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEE
T ss_pred cCCceEEEEEcCCC--HHHHHHHHHHcCC-CCcEEECCC--cccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCCEEE
Confidence 6899999999876 4678999999999 589999997 5678888999999999998888 9999999999999998
Q ss_pred ecCCcchhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 818 LPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 818 ~~~~~~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
.+.......+.. |-.+ +++. |++++++++.++.+|++.+++++++.++.... +++..+++.+++.++
T Consensus 300 ~~~~~~~e~i~~------~~~g-~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~ 369 (374)
T 2iw1_A 300 TAVCGYAHYIAD------ANCG-TVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADT---QDLYSLPEKAADIIT 369 (374)
T ss_dssp ETTSTTTHHHHH------HTCE-EEECSSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH---SCCSCHHHHHHHHHH
T ss_pred ecCCCchhhhcc------CCce-EEeCCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHH
Confidence 775544443322 3334 4432 89999999999999999999999999987654 677788888888776
Q ss_pred HH
Q 002431 895 KM 896 (922)
Q Consensus 895 ~~ 896 (922)
..
T Consensus 370 ~~ 371 (374)
T 2iw1_A 370 GG 371 (374)
T ss_dssp CC
T ss_pred Hh
Confidence 43
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=6.2e-20 Score=195.53 Aligned_cols=352 Identities=13% Similarity=0.125 Sum_probs=196.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122 (922)
Q Consensus 43 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 122 (922)
..+.|+.++|.+++++. +.+.+|..+|.++.+.|++++|++.|.++ +++..+...+..+...|++++|+.
T Consensus 13 l~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 44678899999999988 33569999999999999999999999774 456689999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002431 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202 (922)
Q Consensus 123 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 202 (922)
+++.+.+..+ ++.+...++.+|.+.|++.++.+.++. | +..+|..+|..+...|++++|..+|.++
T Consensus 83 yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 83 YLQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 9998887543 467788899999999999998887742 4 4469999999999999999999999976
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002431 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKD 282 (922)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 282 (922)
..+..++.++.++|++++|++.++++ .+..+|..+..++...|+++.|..+... +...|+. ...++..|.+
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek 219 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQD 219 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHH
Confidence 47899999999999999999999999 3688999999999999999999777665 3345544 4468889999
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHc--CChhHHHHHHHHHHhcCC-----CCchhhhhHHHHHHHcCCHH
Q 002431 283 VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW--NMLPAAASYYKATLAVTT-----GLSAPFNNLAVIYKQQGNYA 355 (922)
Q Consensus 283 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~g~~~ 355 (922)
.|++++|+.++++++..++....++..++.+|.+- ++..+.++.|...+.+.| .+...|..+..+|.+.++++
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 99999999999999999999999999999988764 567778888877777777 78889999999999999999
Q ss_pred HHHHHHHHHHcc------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH--hhCCCcHHHHHHHHHHHHhcCC
Q 002431 356 DAISCYNEVLRI------------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI--TIRPTMAEAHANLASAYKDSGH 421 (922)
Q Consensus 356 ~A~~~~~~al~~------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~g~ 421 (922)
.|+...-+-... .+.+.+.++.....|. +...+++..+..++ .+++ ......+.+.|+
T Consensus 300 ~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~------~r~v~~~~~~~~ 371 (449)
T 1b89_A 300 NAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDH------TRAVNYFSKVKQ 371 (449)
T ss_dssp HHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCH------HHHHHHHHHTTC
T ss_pred HHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCc------HHHHHHHHHcCC
Confidence 998866555433 5677888888877777 55667788888888 4444 345566788888
Q ss_pred HHHHHHHHHHHHhc
Q 002431 422 VEAAIKSYKQALLL 435 (922)
Q Consensus 422 ~~~A~~~~~~al~~ 435 (922)
..-...+++.+...
T Consensus 372 l~l~~~yl~~v~~~ 385 (449)
T 1b89_A 372 LPLVKPYLRSVQNH 385 (449)
T ss_dssp TTTTHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHh
Confidence 88888888776644
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-19 Score=194.34 Aligned_cols=293 Identities=13% Similarity=0.043 Sum_probs=170.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCC---CchHHHHHHH----HHHHhcCCHHHHH-----------HHHHHHHhcCCC
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNP---LRTDNLLLLG----AIYYQLHDYDMCI-----------ARNEEALRLEPR 65 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la----~~~~~~g~~~~A~-----------~~~~~al~~~p~ 65 (922)
.-.....+.+++++|..+++++.+.-+ .+...+.... ......++++.+. +.++++-. .+.
T Consensus 17 ~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~-~~~ 95 (383)
T 3ulq_A 17 NEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK-KQA 95 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH-HTH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh-cCC
Confidence 445567788888888888888765322 2333332111 1222233333443 44444322 222
Q ss_pred cH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002431 66 FA------ECYGNMANAWKEKGDIDLAIRYYLVAIEL---RPN---FADAWSNLASAYMRKGRLNEAAQCCRQALALNPL 133 (922)
Q Consensus 66 ~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 133 (922)
.. ..++.+|..+...|++++|+..|+++++. .++ ...++..+|.++...|++++|+..++++++..+.
T Consensus 96 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 175 (383)
T 3ulq_A 96 RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE 175 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 22 23444788888888888888888888775 222 4567788888888888888888888888776332
Q ss_pred -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Q 002431 134 -------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF------AIAWSNLAGLFMESGDLNRALQYYKEAVK--- 197 (922)
Q Consensus 134 -------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~--- 197 (922)
...++..+|.++...|++++|+..|+++++..+.. ..++.++|.+|...|++++|+..++++++
T Consensus 176 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 176 HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 23466777777777777777777777777653321 23566667777777777777777776666
Q ss_pred --cC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-----C-hhHHHhHHHHHHHcCC---hHHHHHHHHHHHhc
Q 002431 198 --LK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-----N-AIAFGNLASTYYERGQ---ADMAILYYKQAIGC 265 (922)
Q Consensus 198 --~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~ 265 (922)
.+ |....++..+|.++...|++++|...++++++..+ . ...+..++.++...|+ +++|+..+++. ..
T Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~ 334 (383)
T 3ulq_A 256 ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-ML 334 (383)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TC
T ss_pred hhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cC
Confidence 23 44455666666666666666666666666665421 1 1123445555555555 44444444443 22
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298 (922)
Q Consensus 266 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 298 (922)
.+....++..+|.++...|++++|..+++++++
T Consensus 335 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 335 YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222233444455555555555555555555444
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=8e-19 Score=177.76 Aligned_cols=208 Identities=13% Similarity=0.123 Sum_probs=180.3
Q ss_pred ChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHH
Q 002431 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDP-RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 313 (922)
Q Consensus 235 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 313 (922)
++..+..+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..++++++.+|++..++..+|.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 367889999999999999999999999999988 8888888999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCc-------hhhhhHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHH
Q 002431 314 YMEWNMLPAAASYYKATLAVTTGLS-------APFNNLAVIYKQQGNYADAISCYNEVLRIDPL--AADGLVNRGNTYKE 384 (922)
Q Consensus 314 ~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~ 384 (922)
+...|++++|+..|+++++..|++. .++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 9999999999999999999999988 66889999999999999999999999999999 88999999999976
Q ss_pred hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHh
Q 002431 385 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHT 449 (922)
Q Consensus 385 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 449 (922)
.| ...++++..+.+.+...+ .+......+.+++|+.+|+++++++|+++.+...+...
T Consensus 166 ~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 166 NG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 65 345677777776665443 33445566789999999999999999999887665443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-18 Score=175.91 Aligned_cols=209 Identities=18% Similarity=0.144 Sum_probs=158.0
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP-RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLA 108 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 108 (922)
+.++..++.+|.+++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 34567788888888888888888888888888887 77777777888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHH
Q 002431 109 SAYMRKGRLNEAAQCCRQALALNPLLV-------DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT--FAIAWSNLAGLF 179 (922)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~ 179 (922)
.++...|++++|+..++++++.+|++. .++..+|.++...|++++|+..|+++++.+|+ +..++..+|.++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 888888888888888888888888877 55788888888888888888888888888888 778888888887
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHH
Q 002431 180 MESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLAST 245 (922)
Q Consensus 180 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~ 245 (922)
...| ...++++....+.....+. +......+.+++|+..++++++..|+ ..+...++.+
T Consensus 164 ~~~~-----~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHH-----HHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 6544 3445666666555544332 33344556678888888888888877 5555555544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=191.39 Aligned_cols=231 Identities=15% Similarity=0.160 Sum_probs=158.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhh---CCC----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCC-------CcHH
Q 002431 206 YLNLGNVYKALGMPQEAIMCYQRAVQT---RPN----AIAFGNLASTYYERGQADMAILYYKQAIGCDP-------RFLE 271 (922)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-------~~~~ 271 (922)
++.+|..+...|++++|+..++++++. .++ ..++..+|.++...|++++|+..+++++...+ ....
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 334666666666666666666666654 222 45566666666667777777777766664422 2234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh------HHHHhHHHHHHHcCChhHHHHHHHHHHh-----cC-CCCch
Q 002431 272 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP------QALTNLGNIYMEWNMLPAAASYYKATLA-----VT-TGLSA 339 (922)
Q Consensus 272 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~-----~~-~~~~~ 339 (922)
++..+|.++...|++++|+..++++++..+... .++..+|.+|...|++++|+.+|+++++ .. |....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 677777788888888888888887777643322 3677778888888888888888887777 34 55566
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccC-----CCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhCCCcHHHHHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRID-----PLAADGLVNRGNTYKEIGR---VTDAIQDYIRAITIRPTMAEAHAN 411 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~ 411 (922)
++..+|.++...|++++|+.++++++++. |.....+..+|.++...|+ +++|+..+++. ...|....++..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 77788888888888888888888887763 2223345667888888888 67777777665 333444567788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002431 412 LASAYKDSGHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 412 la~~~~~~g~~~~A~~~~~~al~~~p 437 (922)
+|.+|...|++++|..+|++++++..
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 88888888888888888888887643
|
| >1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-20 Score=209.94 Aligned_cols=178 Identities=11% Similarity=-0.014 Sum_probs=142.5
Q ss_pred CcCCCCCCCC-cEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChh-hHHHHHHHHHHcCCCCCceE-EcCC
Q 002431 703 KRSDYGLPED-KFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQII-FTDV 777 (922)
Q Consensus 703 ~r~~~~l~~~-~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~rv~-f~~~ 777 (922)
.|+++|++++ .+++++++|+ .|+.+.++++|.++.+ ++.+|+|+|+|+. ..+.+++.+.++| ++|+ |.|.
T Consensus 280 ~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~---~~v~~~~g~ 354 (485)
T 1rzu_A 280 VAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAGDVALEGALLAAASRHH---GRVGVAIGY 354 (485)
T ss_dssp HHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECBCHHHHHHHHHHHHHTT---TTEEEEESC
T ss_pred HHHhcCCCCCCCeEEEEEccCccccCHHHHHHHHHHHHh--cCceEEEEeCCchHHHHHHHHHHHhCC---CcEEEecCC
Confidence 5677889875 6688888875 5999999999999876 5899999998853 3678888888875 6887 7888
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcC---------CCCcccc--CC
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATG---------LGEEMIV--NS 845 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g---------~~~~~i~--~~ 845 (922)
+.++...+|+.+|+||.|+.++| |++++|||++|+|||+........-+. -| ..+ +++ .|
T Consensus 355 -~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~------~~~~~~~~~~~~~G-~l~~~~d 426 (485)
T 1rzu_A 355 -NEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVI------DANHAALASKAATG-VQFSPVT 426 (485)
T ss_dssp -CHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCC------BCCHHHHHTTCCCB-EEESSCS
T ss_pred -CHHHHHHHHhcCCEEEECcccCCCCHHHHHHHHCCCCEEEeCCCChhheec------ccccccccccCCcc-eEeCCCC
Confidence 56666788999999999999999 999999999999999654322222111 13 455 444 48
Q ss_pred HHHHHHHHHHHh---cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 846 MKEYEERAVSLA---LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 846 ~~~~~~~~~~l~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
++++++++.++. .|++.+.+++++.++ ..|+++.++++++++|+++..
T Consensus 427 ~~~la~~i~~ll~~~~~~~~~~~~~~~~~~-----~~fs~~~~~~~~~~~y~~~~~ 477 (485)
T 1rzu_A 427 LDGLKQAIRRTVRYYHDPKLWTQMQKLGMK-----SDVSWEKSAGLYAALYSQLIS 477 (485)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-----CCCBHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----HhCChHHHHHHHHHHHHHhhC
Confidence 999999999998 899999999988865 359999999999999998753
|
| >2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.3e-20 Score=208.42 Aligned_cols=178 Identities=14% Similarity=0.006 Sum_probs=142.0
Q ss_pred CcCCCCCCC--CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChh-hHHHHHHHHHHcCCCCCceE-EcC
Q 002431 703 KRSDYGLPE--DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQII-FTD 776 (922)
Q Consensus 703 ~r~~~~l~~--~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~rv~-f~~ 776 (922)
.|+++|+++ +.+++++++|+ .|+.+.++++|.++.+ ++.+|+|+|+|+. ..+.+++.+.++| ++|+ |.|
T Consensus 280 ~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~---~~v~~~~g 354 (485)
T 2qzs_A 280 LQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAGDPVLQEGFLAAAAEYP---GQVGVQIG 354 (485)
T ss_dssp HHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEECHHHHHHHHHHHHHST---TTEEEEES
T ss_pred HHHHcCCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhh--CCcEEEEEeCCchHHHHHHHHHHHhCC---CcEEEeCC
Confidence 567788886 66777777765 5999999999999876 5899999998753 3678888888875 6886 888
Q ss_pred CCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcC---------CCCcccc--C
Q 002431 777 VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATG---------LGEEMIV--N 844 (922)
Q Consensus 777 ~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g---------~~~~~i~--~ 844 (922)
. +.++...+|+.+||||.|+.++| |++++|||++|+|||+.....+..-+. -| ..+ +++ .
T Consensus 355 ~-~~~~~~~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~------~~~~~~~~~~~~~G-~l~~~~ 426 (485)
T 2qzs_A 355 Y-HEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVS------DCSLENLADGVASG-FVFEDS 426 (485)
T ss_dssp C-CHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCC------BCCHHHHHTTCCCB-EEECSS
T ss_pred C-CHHHHHHHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEECCCCCccceec------cCccccccccccce-EEECCC
Confidence 8 66666788999999999999999 999999999999999654322222111 13 455 554 4
Q ss_pred CHHHHHHHHHHHh---cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 845 SMKEYEERAVSLA---LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 845 ~~~~~~~~~~~l~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
|++++++++.+++ .|++.+.+++++.++ ..|+++.++++++++|++++.
T Consensus 427 d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~-----~~fs~~~~~~~~~~ly~~~~~ 478 (485)
T 2qzs_A 427 NAWSLLRAIRRAFVLWSRPSLWRFVQRQAMA-----MDFSWQVAAKSYRELYYRLKL 478 (485)
T ss_dssp SHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHhhh
Confidence 8999999999998 799999999988865 249999999999999998865
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.78 E-value=5e-17 Score=168.65 Aligned_cols=229 Identities=12% Similarity=0.049 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHc---CCHHHH
Q 002431 50 DMCIARNEEALRLEPRFAECYGNMANAWKEKG--DIDLAIRYYLVAIELRPNFADAWSNLASAY----MRK---GRLNEA 120 (922)
Q Consensus 50 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~~~A 120 (922)
++|++.+++++..+|++..+|+..+.++...| +++++++.+++++..+|++..+|...+.++ ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 45555555555555555555555555555555 555555555555555555555555555555 444 455555
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC------HHHHHHHH
Q 002431 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ--EAYSCYLEALRIQPTFAIAWSNLAGLFMESGD------LNRALQYY 192 (922)
Q Consensus 121 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------~~~A~~~~ 192 (922)
+..++++++.+|++..+|...+.++...|.++ ++++.++++++.+|.+..+|...+.++...+. ++++++++
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 55555555555555555555555555555555 55566666666666666666665555555554 56666666
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhhC---CC-hhHHHhHHHHHHHcCChHHHHHHHHHHHh-cC
Q 002431 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQE-AIMCYQRAVQTR---PN-AIAFGNLASTYYERGQADMAILYYKQAIG-CD 266 (922)
Q Consensus 193 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-~~ 266 (922)
++++..+|.+..+|+.++.++...|+..+ ....+.++++.. +. ..++..++.++.+.|+.++|+++|+.+.+ .+
T Consensus 210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D 289 (306)
T 3dra_A 210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN 289 (306)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC
Confidence 66666666666666666666666665433 333444444433 22 55666666666666666666666666664 56
Q ss_pred CCcHHHHHHHHH
Q 002431 267 PRFLEAYNNLGN 278 (922)
Q Consensus 267 p~~~~~~~~l~~ 278 (922)
|.....|...+.
T Consensus 290 pir~~yW~~~~~ 301 (306)
T 3dra_A 290 PIRSNFWDYQIS 301 (306)
T ss_dssp GGGHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 666666655544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-19 Score=189.86 Aligned_cols=248 Identities=22% Similarity=0.257 Sum_probs=131.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 002431 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL--------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNA 236 (922)
Q Consensus 165 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 236 (922)
+|....++..++.++...|++++|+..++++++. .+....++..+|.++...|++++|+..+++++....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-- 100 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE-- 100 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--
Confidence 3445566666666666666666666666666653 333444566666666666666666666666654310
Q ss_pred hHHHhHHHHHHHcCChHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCChHHH
Q 002431 237 IAFGNLASTYYERGQADMAILYYKQAI-GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ--------PSHPQAL 307 (922)
Q Consensus 237 ~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~ 307 (922)
+.. ...|....++..+|.++...|++++|+.+++++++.. |....++
T Consensus 101 ------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 101 ------------------------KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp ------------------------HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ------------------------HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 000 0012223344444444444444444444444444432 2223344
Q ss_pred HhHHHHHHHcCChhHHHHHHHHHHhc--------CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCC---------C
Q 002431 308 TNLGNIYMEWNMLPAAASYYKATLAV--------TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP---------L 370 (922)
Q Consensus 308 ~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------~ 370 (922)
..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+..++++++..+ .
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 44555555555555555555555444 333344455555666666666666666666554321 1
Q ss_pred ------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 371 ------AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 371 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
....+...+..+...+.+.+|...++++....|....++..+|.+|...|++++|.++|++++++.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 12234444555566677777788888888888888888888899998889999999999888887664
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.9e-19 Score=186.61 Aligned_cols=247 Identities=22% Similarity=0.297 Sum_probs=166.3
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 002431 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL--------EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL---- 96 (922)
Q Consensus 29 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 96 (922)
+|....++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.+|+++++.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4566788888888999999999999999888874 5566778888888888888888888888888876
Q ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 97 ----RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN--------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164 (922)
Q Consensus 97 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (922)
.|....++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+..++++++.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456678888888888888888888888887663 344556777777777777777777777777766
Q ss_pred --------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCChHHHHHHHH
Q 002431 165 --------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT---------FPDAYLNLGNVYKALGMPQEAIMCYQ 227 (922)
Q Consensus 165 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~ 227 (922)
.|....++..++.++...|++++|+..++++++..+. ....+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~------------------- 243 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH------------------- 243 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH-------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH-------------------
Confidence 4555566666777777777777777777766653221 0011111
Q ss_pred HHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002431 228 RAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302 (922)
Q Consensus 228 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 302 (922)
...+...+..+...+.+.++...++++....|....++..+|.++...|++++|.+++++++++.|+
T Consensus 244 --------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 244 --------AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred --------HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1222333444455566667777777777777777778888888888888888888888888877654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.3e-17 Score=167.44 Aligned_cols=229 Identities=7% Similarity=-0.011 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcC--ChHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHc---CCHHHH
Q 002431 220 QEAIMCYQRAVQTRPN-AIAFGNLASTYYERG--QADMAILYYKQAIGCDPRFLEAYNNLGNAL----KDV---GRVDEA 289 (922)
Q Consensus 220 ~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~----~~~---g~~~~A 289 (922)
++|+..+.+++.++|+ ..+|+..+.++...+ ++++++..+++++..+|++..+|...+.++ ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 4566666666666665 555666666666655 666666666666666777666776666666 555 567777
Q ss_pred HHHHHHHHhhCCCChHHHHhHHHHHHHcCChh--HHHHHHHHHHhcCCCCchhhhhHHHHHHHcCC------HHHHHHHH
Q 002431 290 IQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP--AAASYYKATLAVTTGLSAPFNNLAVIYKQQGN------YADAISCY 361 (922)
Q Consensus 290 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~ 361 (922)
+.+++++++.+|.+..+|...+.++...+.++ +++.+++++++.+|.+..+|+..+.++...++ ++++++++
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 77777777777777777777777777777766 77777777777777777777777777777666 78888888
Q ss_pred HHHHccCCCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHHhhC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cC
Q 002431 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTD-AIQDYIRAITIR---PTMAEAHANLASAYKDSGHVEAAIKSYKQALL-LR 436 (922)
Q Consensus 362 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~ 436 (922)
++++..+|.+..+|+.++.++.+.|+..+ ....++++++++ |.++.++..++.+|.+.|+.++|+++|+++.+ .+
T Consensus 210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D 289 (306)
T 3dra_A 210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN 289 (306)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC
Confidence 88888888888888888888888887544 445666666665 77788888888888888888888888888886 68
Q ss_pred CCCHHHHHHHHH
Q 002431 437 PDFPEATCNLLH 448 (922)
Q Consensus 437 p~~~~~~~~l~~ 448 (922)
|-....|.....
T Consensus 290 pir~~yW~~~~~ 301 (306)
T 3dra_A 290 PIRSNFWDYQIS 301 (306)
T ss_dssp GGGHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 887777765544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-17 Score=170.59 Aligned_cols=210 Identities=15% Similarity=0.112 Sum_probs=146.8
Q ss_pred hhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---c
Q 002431 27 ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN---F 100 (922)
Q Consensus 27 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~ 100 (922)
..+|.++..++.+|..++..|++++|+..|+++++..|++ ..+++.+|.++...|++++|+..|+++++..|+ .
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4467788899999999999999999999999999998888 888999999999999999999999999998774 4
Q ss_pred HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 002431 101 ADAWSNLASAYMR--------KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 172 (922)
Q Consensus 101 ~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 172 (922)
..+++.+|.++.. .|++++|+..|+++++.+|++..+...+..+....+ .....+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~-----------------~~~~~~ 151 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRA-----------------KLARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH-----------------HHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHH-----------------HHHHHH
Confidence 6788899999998 899999999999999998887655533222111111 111224
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhhCCC----
Q 002431 173 SNLAGLFMESGDLNRALQYYKEAVKLKPT---FPDAYLNLGNVYKAL----------GMPQEAIMCYQRAVQTRPN---- 235 (922)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~---- 235 (922)
+.+|.+|...|++++|+..|+++++..|+ .+.+++.+|.++... |++++|+..|+++++..|+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 55566666666666666666666666555 234566666666554 5566666666666666665
Q ss_pred hhHHHhHHHHHHHcCChH
Q 002431 236 AIAFGNLASTYYERGQAD 253 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~ 253 (922)
..+...++.++...++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 232 RTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 234444555555444443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=171.25 Aligned_cols=191 Identities=17% Similarity=0.143 Sum_probs=124.1
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHh
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF---LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH---PQALTN 309 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 309 (922)
...++.+|..+...|++++|+..|++++...|++ ..+++.+|.++...|++++|+..|+++++..|++ +.+++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 4555555666666666666666666666555555 5555566666666666666666666666555533 335555
Q ss_pred HHHHHHH--------cCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 002431 310 LGNIYME--------WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT 381 (922)
Q Consensus 310 la~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 381 (922)
+|.++.. .|++++|+..|+++++..|++..+...+..+....++ ....++.+|.+
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-----------------~~~~~~~la~~ 157 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-----------------LARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------HHHHHHHHHHH
Confidence 5555555 5555555555555555555544433222221111110 11224888999
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 382 YKEIGRVTDAIQDYIRAITIRPT---MAEAHANLASAYKDS----------GHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 382 ~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
+...|++++|+..|+++++..|+ ...+++.+|.+|..+ |++++|+..|+++++..|+++.+.
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 99999999999999999999888 567899999999977 889999999999999999987554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.1e-18 Score=199.02 Aligned_cols=202 Identities=13% Similarity=0.019 Sum_probs=140.8
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCC
Q 002431 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL--------SLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 335 (922)
Q Consensus 264 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 335 (922)
..+|++..+++..+ ...|++++|++.+++++ +.+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 34566665555544 56677777777777777 66777777777777777777777777777777777777
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 002431 336 GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA 415 (922)
Q Consensus 336 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 415 (922)
++..+++.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++ +..|+++++++|++..+++++|.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777777777777 777777777777777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhH-hHHHHHHHHH
Q 002431 416 YKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR-DRMFSEVEGI 469 (922)
Q Consensus 416 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 469 (922)
+.++|++++|++.|+++++++|++..++.++..++...+...++ ...++++.+.
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 598 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARR 598 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 77777777777777777777777777777777776655543333 3344444443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-16 Score=170.18 Aligned_cols=272 Identities=13% Similarity=0.028 Sum_probs=134.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------H
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA-----ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF------A 101 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 101 (922)
..++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|...+++++...+.. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 34556667777777777777777777776655432 245566666666777777777776666543221 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 002431 102 DAWSNLASAYMRKGRLNEAAQCCRQALALN--------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 173 (922)
Q Consensus 102 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 173 (922)
.++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|...+++++...+....
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--- 170 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP--- 170 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc---
Confidence 234555666666666666666666655442 112233444555555555555555555555544332100
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---hhHH-----HhHHHH
Q 002431 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---AIAF-----GNLAST 245 (922)
Q Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~-----~~l~~~ 245 (922)
+....++..++.++...|++++|...+++++...+. ...+ ...+.+
T Consensus 171 --------------------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 171 --------------------------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 224 (373)
T ss_dssp --------------------------GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 001123344444444444444444444444432111 0000 012233
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHhHHHHHH
Q 002431 246 YYERGQADMAILYYKQAIGCDPRF----LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH------PQALTNLGNIYM 315 (922)
Q Consensus 246 ~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~ 315 (922)
+...|++++|...+++++...+.. ...+..++.++...|++++|...+++++...+.. ..++..++.++.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 444555555555555544433321 1234455666666666666666666655442211 124444455555
Q ss_pred HcCChhHHHHHHHHHHhc
Q 002431 316 EWNMLPAAASYYKATLAV 333 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~ 333 (922)
..|++++|...+++++..
T Consensus 305 ~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 555555555555555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=175.13 Aligned_cols=173 Identities=14% Similarity=0.126 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHhHHHHHHHc-CChhHHHHHHHHHHhcCCCC------
Q 002431 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH------PQALTNLGNIYMEW-NMLPAAASYYKATLAVTTGL------ 337 (922)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~------ 337 (922)
.++..+|.++...|++++|+.+|++++++.+.. ..++..+|.+|... |++++|+.+|+++++..|..
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 355556666666666666666666666554322 23566677777774 77777777777777665543
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHH---
Q 002431 338 SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD-------GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE--- 407 (922)
Q Consensus 338 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 407 (922)
..++..+|.++..+|++++|+..|+++++..|.+.. ++..+|.++..+|++++|+..|+++++++|+...
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 345677777777888888888888888777765432 5677788888888888888888888887776543
Q ss_pred --HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 408 --AHANLASAYK--DSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 408 --~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
.+..++..+. ..+++++|+..|++++.++|.+...+
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 2444556554 45678888888888888777654443
|
| >3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-18 Score=202.91 Aligned_cols=185 Identities=11% Similarity=0.035 Sum_probs=151.5
Q ss_pred CCcCCCCC--CCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChh----------hHHHHHHHHHHcCC
Q 002431 702 PKRSDYGL--PEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA----------GEMRLRAYAVAQGV 767 (922)
Q Consensus 702 ~~r~~~~l--~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~----------~~~~l~~~~~~~g~ 767 (922)
..|+.+|+ +++.+++++++|+ .|+.+.+++++.++.+..|+.+|+|+|+|+. ..+.+++.++++|+
T Consensus 559 ~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL 638 (816)
T 3s28_A 559 ENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKL 638 (816)
T ss_dssp CBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCC
Confidence 35677788 7777888888876 5999999999999988889999999999872 35789999999999
Q ss_pred CCCceEEcCCCC----cHHHHHhcc-CCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcc
Q 002431 768 QPDQIIFTDVAM----KQEHIRRSS-LADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM 841 (922)
Q Consensus 768 ~~~rv~f~~~~~----~~~~~~~~~-~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~ 841 (922)
.++|.|+|.++ ..+...+|. .+|||+.|+.++| |++++|||+||+|||+........-+. -|..+ +
T Consensus 639 -~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~------dg~~G-l 710 (816)
T 3s28_A 639 -NGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIV------HGKSG-F 710 (816)
T ss_dssp -BBBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCC------BTTTB-E
T ss_pred -CCcEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChHHHHc------cCCcE-E
Confidence 59999999544 477888777 6899999999999 999999999999999755443333221 14445 4
Q ss_pred cc--CCHHHHHHHHHHHh----cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 002431 842 IV--NSMKEYEERAVSLA----LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKM 896 (922)
Q Consensus 842 i~--~~~~~~~~~~~~l~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 896 (922)
++ .|++++++++.++. .|++.+.+++++.++... ..|+++.++++++++|+..
T Consensus 711 lv~p~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~--~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 711 HIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIE--EKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp EECTTSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHH--HSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHH
Confidence 44 38999999997666 899999999999999872 3599999999999999864
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-17 Score=194.38 Aligned_cols=188 Identities=16% Similarity=-0.014 Sum_probs=173.3
Q ss_pred hhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH--------hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002431 27 ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL--------RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98 (922)
Q Consensus 27 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 98 (922)
..+|+++.+++..+ ...|++++|++.+++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 45678888887776 88999999999999999 88999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 002431 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 178 (922)
Q Consensus 99 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 178 (922)
++..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++ +..|+++++.+|++..+++++|.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 002431 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 218 (922)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 218 (922)
+...|++++|+..|+++++.+|++..++.+++.++...++
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999877665
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-16 Score=171.17 Aligned_cols=264 Identities=14% Similarity=0.079 Sum_probs=202.5
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCch-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHHH
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRT-----DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF------AECY 70 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~ 70 (922)
++.+|..+...|++++|+..+++++...|.+. .++..+|.++...|++++|...+++++...+.. ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 35678889999999999999999998876542 267889999999999999999999999875432 3457
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHH
Q 002431 71 GNMANAWKEKGDIDLAIRYYLVAIELR--------PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPL-----LVDA 137 (922)
Q Consensus 71 ~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~ 137 (922)
..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|...+++++...+. ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 889999999999999999999999864 334567888999999999999999999999988764 3457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHH
Q 002431 138 HSNLGNLMKAQGLVQEAYSCYLEALRIQP--TFAIAWS-----NLAGLFMESGDLNRALQYYKEAVKLKPTF----PDAY 206 (922)
Q Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~-----~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~ 206 (922)
+..++.++...|++++|...+++++...+ .....+. .++.++...|++++|...+++++...+.. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 88899999999999999999999887632 2211111 33455778888888888888887765543 2245
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCC-------hhHHHhHHHHHHHcCChHHHHHHHHHHHhc
Q 002431 207 LNLGNVYKALGMPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYERGQADMAILYYKQAIGC 265 (922)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 265 (922)
..++.++...|++++|...+++++...+. ...+..++.++...|++++|...+++++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 67777888888888888888777654221 235555666666666666666666666543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.6e-17 Score=176.19 Aligned_cols=290 Identities=16% Similarity=0.103 Sum_probs=176.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC---CchHHHHHHHHHHHh----cCCHHHHH---------HHHHHHHhcCCC-----c
Q 002431 8 QMYKSGSYKQALEHSNSVYERNP---LRTDNLLLLGAIYYQ----LHDYDMCI---------ARNEEALRLEPR-----F 66 (922)
Q Consensus 8 ~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~----~g~~~~A~---------~~~~~al~~~p~-----~ 66 (922)
..+.++++++|..+++++.+..+ .+...++..+...++ .+.+..+. ..++++-..... .
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~ 100 (378)
T 3q15_A 21 KMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLK 100 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHH
Confidence 45788899999999988754322 233333222222211 11111112 333333221111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------
Q 002431 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELR---P---NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPL------- 133 (922)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------- 133 (922)
...++.+|..+...|++++|+..|+++++.. + ....++..+|.+|...|++++|+..++++++..+.
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 2356677888888888888888888887752 2 24567788888888888888888888888776432
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCC
Q 002431 134 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP------TFAIAWSNLAGLFMESGDLNRALQYYKEAVK-----LKPTF 202 (922)
Q Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~ 202 (922)
...++..+|.++...|++++|+..|+++++..+ ....++.++|.+|...|++++|+..++++++ .+|..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 234667778888888888888888887776522 1234666777777777777777777777776 55555
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-----C-hhHHHhHHHHHHHcCC---hHHHHHHHHHHHhcCCCcHHHH
Q 002431 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-----N-AIAFGNLASTYYERGQ---ADMAILYYKQAIGCDPRFLEAY 273 (922)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~ 273 (922)
..++..+|.++...|++++|+..++++++..+ . ...+..++.++...++ +.+|+..+++. ...+.....+
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 339 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHH
Confidence 66677777777777777777777777766532 1 2334445555555555 55555555541 1222233445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 274 NNLGNALKDVGRVDEAIQCYNQCLS 298 (922)
Q Consensus 274 ~~l~~~~~~~g~~~~A~~~~~~al~ 298 (922)
..+|.++...|++++|..+|+++++
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5556666666666666666655554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-17 Score=158.29 Aligned_cols=172 Identities=20% Similarity=0.284 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHH
Q 002431 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYK 349 (922)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 349 (922)
...+..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|...++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 002431 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429 (922)
Q Consensus 350 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 429 (922)
..|++++|++.++++++.+|.+..++..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88999999999999988888888999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHhcCCCCHH
Q 002431 430 KQALLLRPDFPE 441 (922)
Q Consensus 430 ~~al~~~p~~~~ 441 (922)
+++++..|+++.
T Consensus 168 ~~~~~~~~~~~~ 179 (186)
T 3as5_A 168 KKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHCCCG
T ss_pred HHHHHcCCCchh
Confidence 999988887653
|
| >1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=182.24 Aligned_cols=320 Identities=11% Similarity=0.041 Sum_probs=196.3
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCC-----------------
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM----------------- 599 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 599 (922)
+||.+++...+ +.......+.+.+.+.++||.+++..... ....+...+..++.+...
T Consensus 7 mkIl~~~~~~g--G~~~~~~~la~~L~~~G~~V~v~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (364)
T 1f0k_A 7 KRLMVMAGGTG--GHVFPGLAVAHHLMAQGWQVRWLGTADRM---EADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRI 81 (364)
T ss_dssp CEEEEECCSSH--HHHHHHHHHHHHHHTTTCEEEEEECTTST---HHHHGGGGTCEEEECCCCCCTTCCHHHHHTCHHHH
T ss_pred cEEEEEeCCCc--cchhHHHHHHHHHHHcCCEEEEEecCCcc---hhhhccccCCceEEecCCccCcCccHHHHHHHHHH
Confidence 79999985432 33345567888887778999998865421 123344334344433311
Q ss_pred --CHHHHHHHHHhCCCeEEEcCCCcCCCCch----hhhh-cCCCceEEeccccCCCCCC-CcccEEEecCccCCcCccCC
Q 002431 600 --SSDMIAKLINEDKIQILINLNGYTKGARN----EIFA-MQPAPIQVSYMGFPGTTGA-SYIDYLVTDEFVSPLRYAHI 671 (922)
Q Consensus 600 --~~~~~~~~i~~~~~dil~~~~~~~~~~~~----~~~~-~~~apvq~~~~g~~~t~g~-~~~d~~~~d~~~~~~~~~~~ 671 (922)
....+.+.|++.++||+| +++... .+.+ ....|+.++..+.. .+. ...-+..+|.++++....
T Consensus 82 ~~~~~~l~~~l~~~~pDvv~-----~~~~~~~~~~~~~~~~~~~p~v~~~~~~~--~~~~~~~~~~~~d~v~~~~~~~-- 152 (364)
T 1f0k_A 82 FNAWRQARAIMKAYKPDVVL-----GMGGYVSGPGGLAAWSLGIPVVLHEQNGI--AGLTNKWLAKIATKVMQAFPGA-- 152 (364)
T ss_dssp HHHHHHHHHHHHHHCCSEEE-----ECSSTTHHHHHHHHHHTTCCEEEEECSSS--CCHHHHHHTTTCSEEEESSTTS--
T ss_pred HHHHHHHHHHHHhcCCCEEE-----EeCCcCchHHHHHHHHcCCCEEEEecCCC--CcHHHHHHHHhCCEEEecChhh--
Confidence 013467888889999994 443321 1122 23468877654321 111 000011223333332211
Q ss_pred CccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcE-EEEecCCC--CCCCHHHHHHHHHHHhhCCCeE-EEE
Q 002431 672 YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKF-IFACFNQL--YKMDPEIFNTWCNILRRVPNSA-LWL 747 (922)
Q Consensus 672 ~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~-~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~-l~~ 747 (922)
+ |+..++.++.... ...+ ...+.+++++++.. ++...++. .|+.+.+++++.++.+ +.+ +++
T Consensus 153 ~-------~~~~~i~n~v~~~--~~~~--~~~~~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~---~~~~l~i 218 (364)
T 1f0k_A 153 F-------PNAEVVGNPVRTD--VLAL--PLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGD---SVTIWHQ 218 (364)
T ss_dssp S-------SSCEECCCCCCHH--HHTS--CCHHHHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG---GEEEEEE
T ss_pred c-------CCceEeCCccchh--hccc--chhhhhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC---CcEEEEE
Confidence 1 2222222221111 1111 12345677776654 45555555 4888888899988754 566 567
Q ss_pred ecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchh--
Q 002431 748 LRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMAT-- 825 (922)
Q Consensus 748 ~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~-- 825 (922)
+|.++ .+.+++.+.++|+ ++|.|.|.+ .+...+|+.+|+++.|+ ||+|++|||++|+|||+.+......
T Consensus 219 ~G~~~--~~~l~~~~~~~~~--~~v~~~g~~--~~~~~~~~~ad~~v~~s---g~~~~~EAma~G~Pvi~~~~~g~~~~q 289 (364)
T 1f0k_A 219 SGKGS--QQSVEQAYAEAGQ--PQHKVTEFI--DDMAAAYAWADVVVCRS---GALTVSEIAAAGLPALFVPFQHKDRQQ 289 (364)
T ss_dssp CCTTC--HHHHHHHHHHTTC--TTSEEESCC--SCHHHHHHHCSEEEECC---CHHHHHHHHHHTCCEEECCCCCTTCHH
T ss_pred cCCch--HHHHHHHHhhcCC--CceEEecch--hhHHHHHHhCCEEEECC---chHHHHHHHHhCCCEEEeeCCCCchhH
Confidence 78776 4688888999998 479999987 56677788999999986 5999999999999999876442211
Q ss_pred hhHHHHHHhcCCCCcccc-CC--HHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 002431 826 RVAGSLCLATGLGEEMIV-NS--MKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899 (922)
Q Consensus 826 r~~~~~~~~~g~~~~~i~-~~--~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 899 (922)
...+..+...|. +.++. .| ++++++++.++ |++.+++++++.++.. ..|+++++++.+++.|+++-..
T Consensus 290 ~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~y~~~~~~ 360 (364)
T 1f0k_A 290 YWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAAS---IPDATERVANEVSRVARALEHH 360 (364)
T ss_dssp HHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhh---ccCHHHHHHHHHHHHHHHHHhh
Confidence 111223444566 41333 23 78888888888 9999999999998864 3599999999999999876443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=168.45 Aligned_cols=200 Identities=15% Similarity=0.141 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhc--C-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 17 QALEHSNSVYERNPLRTDNLLLLGAIYYQL--H-DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVA 93 (922)
Q Consensus 17 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 93 (922)
+|.++++++-+.-+.....+ .++.. + ++++|+..|+++ |.+|...|++++|+..|+++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 45666666666555322211 12232 2 488888888776 55677788888888888888
Q ss_pred HhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 002431 94 IELRPN------FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL------VDAHSNLGNLMKAQ-GLVQEAYSCYLE 160 (922)
Q Consensus 94 l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~ 160 (922)
++..+. ...++..+|.+|...|++++|+..|++++++.+.. ..++..+|.++... |++++|+..|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 776321 25577788888888888888888888887765432 33556666666664 666666666666
Q ss_pred HHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCChHHHHHHHH
Q 002431 161 ALRIQPTF------AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD-------AYLNLGNVYKALGMPQEAIMCYQ 227 (922)
Q Consensus 161 al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~ 227 (922)
+++..|.. ..++..+|.++...|++++|+..|+++++..|++.. .+..+|.++...|++++|+..|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66654432 334555666666666666666666666665554432 34555555555666666666666
Q ss_pred HHHhhCCC
Q 002431 228 RAVQTRPN 235 (922)
Q Consensus 228 ~~~~~~p~ 235 (922)
++++..|+
T Consensus 224 ~al~l~p~ 231 (292)
T 1qqe_A 224 EGQSEDPN 231 (292)
T ss_dssp GGGCC---
T ss_pred HHHhhCCC
Confidence 55555554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.7e-16 Score=170.00 Aligned_cols=229 Identities=18% Similarity=0.167 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhC---CC----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCC-------cH
Q 002431 205 AYLNLGNVYKALGMPQEAIMCYQRAVQTR---PN----AIAFGNLASTYYERGQADMAILYYKQAIGCDPR-------FL 270 (922)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-------~~ 270 (922)
.++.+|..+...|++++|+..|+++++.. ++ ..++..+|.++...|++++|+..+++++...+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 34455666666666666666666665542 11 445556666666666666666666666543221 13
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------ChHHHHhHHHHHHHcCChhHHHHHHHHHHh-----cCCCCch
Q 002431 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS------HPQALTNLGNIYMEWNMLPAAASYYKATLA-----VTTGLSA 339 (922)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~ 339 (922)
.++..+|.++...|++++|++.++++++..+. ...++..+|.+|...|++++|+.+|++++. .+|....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 34555666666666666666666666554211 123455555566666666666666665555 4444455
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccC-----CCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhCCCcHHHHHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRID-----PLAADGLVNRGNTYKEIGR---VTDAIQDYIRAITIRPTMAEAHAN 411 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~ 411 (922)
++..+|.++...|++++|+.+++++++.. +.....+..++.++...++ +.+|+..+++. ...|....++..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 55555555555555555555555555542 2222334444555555555 44555444441 112223344555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 002431 412 LASAYKDSGHVEAAIKSYKQALL 434 (922)
Q Consensus 412 la~~~~~~g~~~~A~~~~~~al~ 434 (922)
+|.+|...|++++|..+|+++++
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555555555554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=156.10 Aligned_cols=146 Identities=14% Similarity=0.169 Sum_probs=87.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID 84 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 84 (922)
+|..+..+|++++|+..+++++..+|+++..++.+|.+|+..|++++|++.|+++++.+|+++.++..+|.+|...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 34455555666666666666666556566666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002431 85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC-CRQALALNPLLVDAHSNLGNLMKAQGL 150 (922)
Q Consensus 85 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~~l~~~p~~~~~~~~la~~~~~~g~ 150 (922)
+|+..|+++++.+|+++.++..+|.++.+.|++++|.+. ++++++++|+++.++..++.++..+|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 666666666666666666666666666666666554443 356666666666666666655555543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-16 Score=153.43 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
...+..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|++..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (922)
..|++++|...++++++.+|.+..++..+|.++...|++++|+..++++++..|.+..++..++.++...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCCCC
Q 002431 193 KEAVKLKPTF 202 (922)
Q Consensus 193 ~~~l~~~p~~ 202 (922)
+++++..|++
T Consensus 168 ~~~~~~~~~~ 177 (186)
T 3as5_A 168 KKANELDEGA 177 (186)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHcCCCc
Confidence 6665555443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=154.93 Aligned_cols=146 Identities=18% Similarity=0.195 Sum_probs=105.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118 (922)
Q Consensus 39 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 118 (922)
||.++...|++++|+..+++++..+|+++..++.+|.+|.+.|++++|++.|+++++.+|+++.+|..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 56666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCcHHHHHHHHHHHHHcCC
Q 002431 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC-YLEALRIQPTFAIAWSNLAGLFMESGD 184 (922)
Q Consensus 119 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 184 (922)
+|+..|+++++.+|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777777777777777777777777777777665554 467777777777777777776666654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-16 Score=156.38 Aligned_cols=168 Identities=16% Similarity=0.122 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhc
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN----------------MANAWKEKGDIDLAIRYYLVAIEL 96 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~~ 96 (922)
.+.++..|..++..|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555 555555555555555555555555
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCcHHHHHH
Q 002431 97 RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGL--VQEAYSCYLEALRIQPTFAIAWSN 174 (922)
Q Consensus 97 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~ 174 (922)
+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+ .+.+...+.+++...| ...+++.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHH
Confidence 555555555555555555555555555555555555555555555555544432 2233344444332111 1223444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002431 175 LAGLFMESGDLNRALQYYKEAVKLKPT 201 (922)
Q Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~p~ 201 (922)
+|.++...|++++|+..|+++++++|+
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 455555555555555555555555554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-16 Score=157.12 Aligned_cols=172 Identities=17% Similarity=0.138 Sum_probs=113.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 002431 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSN----------------LASAYMRKGRLNEAAQCCRQALA 129 (922)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~~l~ 129 (922)
++..++..|..+...|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677888888999999999999999999999988888887 66666666666666666666666
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHH
Q 002431 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD--LNRALQYYKEAVKLKPTFPDAYL 207 (922)
Q Consensus 130 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~ 207 (922)
.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.+|...|+ ...+...+.+++...|. ..+++
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~ 161 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARY 161 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHH
Confidence 6666666666666666666666666666666666666666666666666655443 23344444444322211 22445
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCChhH
Q 002431 208 NLGNVYKALGMPQEAIMCYQRAVQTRPNAIA 238 (922)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 238 (922)
.+|.++...|++++|+..|+++++..|+...
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 192 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPSTEA 192 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCHHH
Confidence 5566666666666666666666666665433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.9e-15 Score=153.14 Aligned_cols=236 Identities=11% Similarity=0.117 Sum_probs=157.7
Q ss_pred hcCCHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002431 45 QLHDYD-MCIARNEEALRLEPRFAECYGNMANAWKEKGD----------IDLAIRYYLVAIELRPNFADAWSNLASAYMR 113 (922)
Q Consensus 45 ~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 113 (922)
+.|++. +|++.+.+++..+|++..+|+..+.++...+. +++++.+++.++..+|++..+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 344443 56677777777777776666666666665554 5667777777777777777777777777766
Q ss_pred cCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc--------
Q 002431 114 KGR--LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGL-VQEAYSCYLEALRIQPTFAIAWSNLAGLFMES-------- 182 (922)
Q Consensus 114 ~g~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------- 182 (922)
.|+ +++++.+++++++.+|.+..+|...+.+....|. ++++++.+.++++.+|.+..+|..++.++...
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC----
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc
Confidence 663 6677777777777777777777777777777666 46777777777777777777777776666655
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhhCCCh-hHHHhHHH
Q 002431 183 ------GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL-----------GMPQEAIMCYQRAVQTRPNA-IAFGNLAS 244 (922)
Q Consensus 183 ------g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~-~~~~~l~~ 244 (922)
+.++++++++.+++..+|++..+|+.+..++... +.++++++.++++++..|+. ..+..++.
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~ 280 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 280 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHH
Confidence 3466777777777777777777776555555444 34677888888888888772 22222222
Q ss_pred HH---HHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 245 TY---YERGQADMAILYYKQAIGCDPRFLEAYNNLGNAL 280 (922)
Q Consensus 245 ~~---~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 280 (922)
+. ...+..++....+.++++++|....-|..+...+
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 281 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 21 1346677888888888888888777776665544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=167.10 Aligned_cols=223 Identities=22% Similarity=0.256 Sum_probs=153.5
Q ss_pred HHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCcHHHHHHH
Q 002431 10 YKSGSYKQALEHSNSVYER--------NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL--------EPRFAECYGNM 73 (922)
Q Consensus 10 ~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 73 (922)
...|++++|+..|+++++. .|....++..+|.++...|++++|+..++++++. .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777777777652 2556788888999999999999999999988876 34567788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Q 002431 74 ANAWKEKGDIDLAIRYYLVAIEL--------RPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL--------NPLLVDA 137 (922)
Q Consensus 74 a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~ 137 (922)
|.++...|++++|+.+|+++++. +|....++..+|.++...|++++|+..++++++. .|....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888889999998888888877 3556778888888888888888888888888877 5555667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCcHHHHHHHHHHHHHcCCHH------HHHHHHHHHHhcCCCC
Q 002431 138 HSNLGNLMKAQGLVQEAYSCYLEALRI---------QPTFAIAWSNLAGLFMESGDLN------RALQYYKEAVKLKPTF 202 (922)
Q Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~------~A~~~~~~~l~~~p~~ 202 (922)
+..+|.++...|++++|+..++++++. .+.....+..++..+...+... ++...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 788888888888888888888888765 3334445555555554433322 2222222222222333
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002431 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (922)
..++..+|.++...|++++|...++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445666666666666666666666665543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-15 Score=152.91 Aligned_cols=189 Identities=15% Similarity=0.066 Sum_probs=145.7
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH---HHHh
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF---LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ---ALTN 309 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 309 (922)
...++.+|..+...|++++|+..|++++...|++ ..+++.+|.++...|++++|+..|+++++..|+++. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 5678888999999999999999999999887775 468899999999999999999999999999988764 7888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH---------------
Q 002431 310 LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG--------------- 374 (922)
Q Consensus 310 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------- 374 (922)
+|.++...+.. ....+..++..+...|++++|+..|+++++..|+++.+
T Consensus 84 ~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~ 147 (225)
T 2yhc_A 84 RGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLA 147 (225)
T ss_dssp HHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 88888764321 01112233444444556666666666666666655433
Q ss_pred --HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 002431 375 --LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA---EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 375 --~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 440 (922)
...+|.++...|++++|+..|+++++..|+++ .++..+|.+|.++|++++|++.++++....|++.
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 25789999999999999999999999999875 6899999999999999999999999999988764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-15 Score=153.25 Aligned_cols=185 Identities=16% Similarity=0.087 Sum_probs=144.3
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHHHH
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAE---CYGNMAN 75 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~ 75 (922)
++.+|..++..|+|++|+..|+++++..|.+ ..+++.+|.+++..|++++|+..|+++++.+|++.. +++.+|.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~ 86 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL 86 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence 5678999999999999999999999988866 468899999999999999999999999999998754 7888888
Q ss_pred HHHH------------------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002431 76 AWKE------------------KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDA 137 (922)
Q Consensus 76 ~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 137 (922)
++.. .|++++|+..|+++++.+|++..++..+..+....+ .....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-----------------~~~~~ 149 (225)
T 2yhc_A 87 TNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-----------------RLAKY 149 (225)
T ss_dssp HHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-----------------HHHHH
T ss_pred HHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH-----------------HHHHH
Confidence 8876 356666666666666666665543322211110000 00122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 002431 138 HSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA---IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP 203 (922)
Q Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 203 (922)
...+|.++...|++++|+..|+++++..|+++ .++..++.++.+.|++++|++.++++....|++.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 35788999999999999999999999998875 6789999999999999999999999988887754
|
| >2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=156.69 Aligned_cols=159 Identities=11% Similarity=0.097 Sum_probs=132.7
Q ss_pred CCcCCCCCCCCcEEEEecCC---CCCCCHHHHHHHHHHH--hhCCCeEEEEecCCh--hhHHHHHHHHHHcCCCCCceEE
Q 002431 702 PKRSDYGLPEDKFIFACFNQ---LYKMDPEIFNTWCNIL--RRVPNSALWLLRFPA--AGEMRLRAYAVAQGVQPDQIIF 774 (922)
Q Consensus 702 ~~r~~~~l~~~~~~~~~~~~---~~K~~~~~~~~~~~il--~~~p~~~l~~~~~~~--~~~~~l~~~~~~~g~~~~rv~f 774 (922)
..|+++|++++. +++++++ ..|+.+.++++|.++. ++.|+.+|+|+|.++ . .+.+++.+.+.| +|+|
T Consensus 26 ~~r~~~~~~~~~-~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~-~~~l~~~~~~~~----~v~~ 99 (200)
T 2bfw_A 26 SLLSKFGMDEGV-TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPEL-EGWARSLEEKHG----NVKV 99 (200)
T ss_dssp HHHHHTTCCSCE-EEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHH-HHHHHHHHHHCT----TEEE
T ss_pred HHHHHcCCCCCC-EEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHH-HHHHHHHHHhcC----CEEE
Confidence 368889998664 6666665 5599999999999998 888999999999876 4 678888888876 8999
Q ss_pred -cCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHH
Q 002431 775 -TDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYE 850 (922)
Q Consensus 775 -~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~ 850 (922)
.|.++..+...+|+.+|++|.|+.++| |++++|||++|+|||+.....+.. ++ -|-.+ ++.. |+++++
T Consensus 100 ~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e-----~~--~~~~g-~~~~~~~~~~l~ 171 (200)
T 2bfw_A 100 ITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRD-----II--TNETG-ILVKAGDPGELA 171 (200)
T ss_dssp ECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHHHHH-----HC--CTTTC-EEECTTCHHHHH
T ss_pred EeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCCCChHH-----Hc--CCCce-EEecCCCHHHHH
Confidence 999999999999999999999998888 999999999999999765432222 12 25555 5554 999999
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHhhc
Q 002431 851 ERAVSLAL-DRQKLQALTNKLKSVR 874 (922)
Q Consensus 851 ~~~~~l~~-d~~~~~~~~~~~~~~~ 874 (922)
+++.++.+ |++.+.+++++.++..
T Consensus 172 ~~i~~l~~~~~~~~~~~~~~a~~~~ 196 (200)
T 2bfw_A 172 NAILKALELSRSDLSKFRENCKKRA 196 (200)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999 9999999999988865
|
| >3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-16 Score=150.15 Aligned_cols=158 Identities=14% Similarity=0.142 Sum_probs=124.3
Q ss_pred EEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 714 FIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 714 ~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
++|+.++|+ .|+.+.++++|.++ +..|+.+|+|+|.|+. .+.+++.+.+.|+ +|.| |.++..+...+|+.+|
T Consensus 3 ~~i~~~G~~~~~Kg~~~li~a~~~l-~~~~~~~l~i~G~g~~-~~~~~~~~~~~~~---~v~~-g~~~~~~~~~~~~~ad 76 (166)
T 3qhp_A 3 FKIAMVGRYSNEKNQSVLIKAVALS-KYKQDIVLLLKGKGPD-EKKIKLLAQKLGV---KAEF-GFVNSNELLEILKTCT 76 (166)
T ss_dssp EEEEEESCCSTTTTHHHHHHHHHTC-TTGGGEEEEEECCSTT-HHHHHHHHHHHTC---EEEC-CCCCHHHHHHHHTTCS
T ss_pred eEEEEEeccchhcCHHHHHHHHHHh-ccCCCeEEEEEeCCcc-HHHHHHHHHHcCC---eEEE-eecCHHHHHHHHHhCC
Confidence 566777765 69999999999986 5669999999999876 7899999999988 7999 9999999999999999
Q ss_pred EEecCCCCCC-hhHHHHHHHcCC-Ceee-ecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHH
Q 002431 792 LFLDTPLCNA-HTTGTDILWAGL-PMIT-LPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTN 868 (922)
Q Consensus 792 v~l~~~~~~g-~~t~~eal~~g~-Pvv~-~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~ 868 (922)
+++.|+.++| |++++|||++|+ |||+ ..+.....-+... |. - +...|++++++++.++..|++.+.++++
T Consensus 77 v~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~-----~~-~-~~~~~~~~l~~~i~~l~~~~~~~~~~~~ 149 (166)
T 3qhp_A 77 LYVHAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDE-----RS-L-FEPNNAKDLSAKIDWWLENKLERERMQN 149 (166)
T ss_dssp EEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSG-----GG-E-ECTTCHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCC-----ce-E-EcCCCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999998888 999999999996 9998 3333222222110 11 1 3346999999999999999999999999
Q ss_pred HHHhhcccCCCCChHHHHH
Q 002431 869 KLKSVRLTCPLFDTARWVK 887 (922)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~ 887 (922)
+.++... .|+++.+++
T Consensus 150 ~~~~~~~---~~s~~~~~~ 165 (166)
T 3qhp_A 150 EYAKSAL---NYTLENSVI 165 (166)
T ss_dssp HHHHHHH---HHC------
T ss_pred HHHHHHH---HCChhhhhc
Confidence 9988653 388877765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.8e-16 Score=162.02 Aligned_cols=229 Identities=21% Similarity=0.280 Sum_probs=146.5
Q ss_pred HhcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHH
Q 002431 44 YQLHDYDMCIARNEEALRL--------EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL--------RPNFADAWSNL 107 (922)
Q Consensus 44 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 107 (922)
...|++++|+..|+++++. .|....++..+|.++...|++++|+..|+++++. .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777777777653 2456778888888888888888888888888876 35556778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCcHHH
Q 002431 108 ASAYMRKGRLNEAAQCCRQALAL--------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI--------QPTFAIA 171 (922)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~ 171 (922)
|.++...|++++|+..++++++. +|....++..+|.++...|++++|+..++++++. .|....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888888888888888888776 3455667777777777778888888777777776 5555666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhH
Q 002431 172 WSNLAGLFMESGDLNRALQYYKEAVKL---------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL 242 (922)
Q Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l 242 (922)
+..+|.++...|++++|+..++++++. .+.....+..++..+...+....+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 232 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA------------------- 232 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH-------------------
Confidence 777777777777777777777777654 2223334444444433332222111
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 243 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299 (922)
Q Consensus 243 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 299 (922)
.+.++...++......|....++..+|.++...|++++|..+++++++.
T Consensus 233 --------~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 233 --------PYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ------------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1222222222222333444556666666666666666666666666653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-14 Score=147.73 Aligned_cols=233 Identities=12% Similarity=0.076 Sum_probs=133.9
Q ss_pred cCCHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002431 80 KGDID-LAIRYYLVAIELRPNFADAWSNLASAYMRKGR----------LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148 (922)
Q Consensus 80 ~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 148 (922)
.|+++ +|+..+.+++..+|++..+|+..+.++...+. +++++.+++.++..+|++..+|...+.++...
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l 121 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 121 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Confidence 34433 56666666666666666666666666555444 45666666666666666666666666666666
Q ss_pred CC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---------
Q 002431 149 GL--VQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD-LNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL--------- 216 (922)
Q Consensus 149 g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--------- 216 (922)
++ +++++..+.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.+..+|..++.++...
T Consensus 122 ~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 122 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-----
T ss_pred CcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccc
Confidence 53 5666666666666666666666666666666665 45666666666666666666666666665554
Q ss_pred -----CChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHc-----------CChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002431 217 -----GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYER-----------GQADMAILYYKQAIGCDPRFLEAYNNLGNA 279 (922)
Q Consensus 217 -----g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 279 (922)
+.++++++++.+++..+|+ ..+|+.+..++... +.++++++.++++++..|++...+..++.+
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~ 281 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 281 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHH
Confidence 3355666666666666665 44554444444333 235566666666666666654333333322
Q ss_pred HH---HcCCHHHHHHHHHHHHhhCCCChHHHHhHHH
Q 002431 280 LK---DVGRVDEAIQCYNQCLSLQPSHPQALTNLGN 312 (922)
Q Consensus 280 ~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 312 (922)
.. ..+..++....+.++++++|....-|..+..
T Consensus 282 ~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 282 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 21 2345556666666666666655555444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-16 Score=138.92 Aligned_cols=121 Identities=21% Similarity=0.262 Sum_probs=103.7
Q ss_pred HHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHH
Q 002431 330 TLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409 (922)
Q Consensus 330 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 409 (922)
+..++|+.+..+..+|..+.+.|++++|++.|+++++++|.++.++..+|.++..+|++++|+..|+++++++|++..++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34567777788888888888889999999999999998999999999999999999999999999999999999988899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhh
Q 002431 410 ANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450 (922)
Q Consensus 410 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 450 (922)
+.+|.+|..+|++++|++.|+++++++|+++.+..++..++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999888887776543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-14 Score=151.18 Aligned_cols=185 Identities=15% Similarity=0.114 Sum_probs=142.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002431 35 NLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG-DIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113 (922)
Q Consensus 35 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 113 (922)
++..+..+....+..++|++.+++++..+|++..+|+..+.++...| .+++++..+++++..+|++..+|...+.++..
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33333344444455567888888888888888888888888888777 48888888888888888888888888888777
Q ss_pred c-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q 002431 114 K-G-RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ--------EAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183 (922)
Q Consensus 114 ~-g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 183 (922)
. + ++++++++++++++.+|.+..+|...+.++...|.++ ++++.++++++.+|.+..+|...+.++...+
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 6 6 7788888888888888888888888887777777766 7888888888888888888888888887777
Q ss_pred C-------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 002431 184 D-------LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 219 (922)
Q Consensus 184 ~-------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~ 219 (922)
. ++++++++++++..+|++..+|+.+..++...|+.
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 6 67888888888888888888888877777776654
|
| >2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-17 Score=181.45 Aligned_cols=153 Identities=8% Similarity=-0.071 Sum_probs=113.3
Q ss_pred CCCCCHHHHHHHHHHHhhCCC---eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCC
Q 002431 722 LYKMDPEIFNTWCNILRRVPN---SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL 798 (922)
Q Consensus 722 ~~K~~~~~~~~~~~il~~~p~---~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~ 798 (922)
..|+.+.++++++.+.++.|+ .+|+++|+|+. . .++|+ .++|+|+|.++.++...+|+.+|||+.||.
T Consensus 253 ~~Kg~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~-~-------~~l~~-~~~v~f~G~~~~~~l~~~~~~adv~v~pS~ 323 (413)
T 2x0d_A 253 KRNAFTLIVEALKIFVQKYDRSNEWKIISVGEKHK-D-------IALGK-GIHLNSLGKLTLEDYADLLKRSSIGISLMI 323 (413)
T ss_dssp GGGCHHHHHHHHHHHHHHCTTGGGCEEEEEESCCC-C-------EEEET-TEEEEEEESCCHHHHHHHHHHCCEEECCCS
T ss_pred hccCHHHHHHHHHHHHHhCCCCCceEEEEEcCCch-h-------hhcCC-cCcEEEcCCCCHHHHHHHHHhCCEEEEecC
Confidence 458999999999999888886 79999998865 2 35688 589999999999999999999999999998
Q ss_pred CCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc-CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhccc
Q 002431 799 CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-NSMKEYEERAVSLALDRQKLQALTNKLKSVRLT 876 (922)
Q Consensus 799 ~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~-~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~ 876 (922)
++| |++.+|||+||+|||+..|.. .+-+. -|.++.++. .|++++++++.+|++|++++++ +.++..
T Consensus 324 ~E~~g~~~lEAmA~G~PVV~~~~g~-~e~v~------~~~~G~lv~~~d~~~la~ai~~ll~~~~~~~~---~~~~~~-- 391 (413)
T 2x0d_A 324 SPHPSYPPLEMAHFGLRVITNKYEN-KDLSN------WHSNIVSLEQLNPENIAETLVELCMSFNNRDV---DKKESS-- 391 (413)
T ss_dssp SSSCCSHHHHHHHTTCEEEEECBTT-BCGGG------TBTTEEEESSCSHHHHHHHHHHHHHHTC----------CCB--
T ss_pred CCCCCcHHHHHHhCCCcEEEeCCCc-chhhh------cCCCEEEeCCCCHHHHHHHHHHHHcCHHHHHH---hHHHHH--
Confidence 888 999999999999999855432 22221 144441232 5899999999999999887776 344432
Q ss_pred CCCCChHHHHHHHHHHHHHHH
Q 002431 877 CPLFDTARWVKNLERSYFKMW 897 (922)
Q Consensus 877 ~~~~~~~~~~~~~e~~y~~~~ 897 (922)
..|+++..+++ .+.|++++
T Consensus 392 -~~~~W~~~~~~-~~~~~~l~ 410 (413)
T 2x0d_A 392 -NMMFYINEFNE-FSFIKEIE 410 (413)
T ss_dssp -SCGGGCCCC----TTHHHHH
T ss_pred -HhCCHHHHHHH-HHHHHHHH
Confidence 35898888777 55666654
|
| >1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.7e-17 Score=177.44 Aligned_cols=333 Identities=13% Similarity=0.071 Sum_probs=197.1
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCCC-eEEEEEecCCCCChHHHHHHHhccCce-EECCCC----C--------HH
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKEN-VEVFCYALSPNDGTEWRQRTQSEAEHF-VDVSAM----S--------SD 602 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~--------~~ 602 (922)
|||.++++. .+-...+.++++.+.+.. +++.+...+.... ...+.++.....+ .++.-. + ..
T Consensus 1 mkIl~v~~~---~~~~~~~~~l~~~L~~~g~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (384)
T 1vgv_A 1 MKVLTVFGT---RPEAIKMAPLVHALAKDPFFEAKVCVTAQHRE-MLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILE 76 (384)
T ss_dssp CEEEEEECS---HHHHHHHHHHHHHHHHSTTCEEEEEECCSSGG-GGHHHHHHHTCCCSEECCCCSTTSCHHHHHHHHHH
T ss_pred CeEEEEecc---cHHHHHHHHHHHHHHhCCCCceEEEEcCCCHH-HHHHHHHHcCCCCCcceecCCCCccHHHHHHHHHH
Confidence 578888753 122234567777776554 4665555443322 1122233322222 333321 1 24
Q ss_pred HHHHHHHhCCCeEEEcCCCcCCCC-ch----hhhh-cCCCceEEeccccCCCC---CCCc-cc----EEEecCccCCcCc
Q 002431 603 MIAKLINEDKIQILINLNGYTKGA-RN----EIFA-MQPAPIQVSYMGFPGTT---GASY-ID----YLVTDEFVSPLRY 668 (922)
Q Consensus 603 ~~~~~i~~~~~dil~~~~~~~~~~-~~----~~~~-~~~apvq~~~~g~~~t~---g~~~-~d----~~~~d~~~~~~~~ 668 (922)
.+.+.+++.++||+ |+++. .. .+.+ .+..|+..+..|..... ..+. +- +..+|.+++++..
T Consensus 77 ~l~~~l~~~~pDvv-----~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~ 151 (384)
T 1vgv_A 77 GLKPILAEFKPDVV-----LVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTET 151 (384)
T ss_dssp HHHHHHHHHCCSEE-----EEETTCHHHHHHHHHHHTTTCCEEEESCCCCCSCTTSSTTHHHHHHHHHTTCSEEEESSHH
T ss_pred HHHHHHHHhCCCEE-----EEeCCchHHHHHHHHHHHHCCCEEEEecccccccccCCCchHhhHHHHHhhccEEEcCcHH
Confidence 57888999999999 55543 11 1222 23468766554432100 0000 00 1124555555443
Q ss_pred cC-C------CccceeecCCccccCCCccccccCCCC---CCCCCcCCCC-CCC-CcEEEEecCCCC---CCCHHHHHHH
Q 002431 669 AH-I------YSEKLVHVPHCYFVNDYKQKNMDVLDP---NCQPKRSDYG-LPE-DKFIFACFNQLY---KMDPEIFNTW 733 (922)
Q Consensus 669 ~~-~------~~e~~~~lp~~~~~~~~~~~~~~~~~~---~~~~~r~~~~-l~~-~~~~~~~~~~~~---K~~~~~~~~~ 733 (922)
.. . -.+++..+|+........ .+..... .....|.++| +++ +.+++++++|+. |+.+.++++|
T Consensus 152 ~~~~l~~~g~~~~~i~vi~n~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~li~a~ 229 (384)
T 1vgv_A 152 SRQNLLRENVADSRIFITGNTVIDALLW--VRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHAL 229 (384)
T ss_dssp HHHHHHHTTCCGGGEEECCCHHHHHHHH--HHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHHHHHH
T ss_pred HHHHHHHcCCChhhEEEeCChHHHHHHh--hhhccccchhhhHHHHHhccccCCCCCEEEEEeCCccccchHHHHHHHHH
Confidence 11 1 123444444432110000 0000000 0012467788 854 456788888754 8889999999
Q ss_pred HHHHhhCCCeEEEEe-cCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcC
Q 002431 734 CNILRRVPNSALWLL-RFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAG 812 (922)
Q Consensus 734 ~~il~~~p~~~l~~~-~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g 812 (922)
.++.++.|+.+|+++ |.++...+.+++.+ +. .++|+|+|.++..+...+|+.+|+|+.|+ |++ ++|||++|
T Consensus 230 ~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~---~~-~~~v~~~g~~~~~~~~~~~~~ad~~v~~S---g~~-~lEA~a~G 301 (384)
T 1vgv_A 230 ADIATTHQDIQIVYPVHLNPNVREPVNRIL---GH-VKNVILIDPQEYLPFVWLMNHAWLILTDS---GGI-QEEAPSLG 301 (384)
T ss_dssp HHHHHHCTTEEEEEECCBCHHHHHHHHHHH---TT-CTTEEEECCCCHHHHHHHHHHCSEEEESS---STG-GGTGGGGT
T ss_pred HHHHhhCCCeEEEEEcCCCHHHHHHHHHHh---hc-CCCEEEeCCCCHHHHHHHHHhCcEEEECC---cch-HHHHHHcC
Confidence 999998999998875 44442245555543 33 36899999888888999999999999888 444 89999999
Q ss_pred CCeeeecC-CcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHH
Q 002431 813 LPMITLPL-EKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLER 891 (922)
Q Consensus 813 ~Pvv~~~~-~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 891 (922)
+|||+.+. ..... ++ ..| ...++..|++++++++.+++.|++.+++++++.++. ...|+++++++.+++
T Consensus 302 ~PvI~~~~~~~~~e-----~v-~~g-~g~lv~~d~~~la~~i~~ll~d~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~ 371 (384)
T 1vgv_A 302 KPVLVMRDTTERPE-----AV-TAG-TVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPY---GDGQACSRILEALKN 371 (384)
T ss_dssp CCEEEESSCCSCHH-----HH-HHT-SEEEECSSHHHHHHHHHHHHHCHHHHHHHHSSCCTT---CCSCHHHHHHHHHHH
T ss_pred CCEEEccCCCCcch-----hh-hCC-ceEEeCCCHHHHHHHHHHHHhChHHHhhhhhccCCC---cCCCHHHHHHHHHHH
Confidence 99998753 22222 22 226 452444599999999999999999999988776553 345899999999988
Q ss_pred HHHHHHH
Q 002431 892 SYFKMWS 898 (922)
Q Consensus 892 ~y~~~~~ 898 (922)
.|.+...
T Consensus 372 ~~~~~~~ 378 (384)
T 1vgv_A 372 NRISLGS 378 (384)
T ss_dssp TCCCC--
T ss_pred HHHhhcc
Confidence 8766544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-14 Score=148.98 Aligned_cols=175 Identities=15% Similarity=0.124 Sum_probs=164.7
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-C-CHHHHH
Q 002431 11 KSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLH-DYDMCIARNEEALRLEPRFAECYGNMANAWKEK-G-DIDLAI 87 (922)
Q Consensus 11 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~~A~ 87 (922)
..+..++|++.+++++..+|++..+|+.++.++...| .++++++.+++++..+|++..+|...+.++... + ++++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3445578999999999999999999999999999999 599999999999999999999999999999998 8 999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------HH
Q 002431 88 RYYLVAIELRPNFADAWSNLASAYMRKGRLN--------EAAQCCRQALALNPLLVDAHSNLGNLMKAQGL-------VQ 152 (922)
Q Consensus 88 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-------~~ 152 (922)
+++.++++.+|++..+|...+.++.+.|.++ ++++.++++++.+|.+..+|...+.++...+. ++
T Consensus 146 ~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 146 EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHH
Confidence 9999999999999999999999999988887 99999999999999999999999999999987 79
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q 002431 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 185 (922)
Q Consensus 153 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 185 (922)
++++.+++++..+|++..+|+.+..++...|+.
T Consensus 226 eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 226 DELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999988887764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.1e-16 Score=148.65 Aligned_cols=162 Identities=12% Similarity=0.098 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHH-HH
Q 002431 272 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY-KQ 350 (922)
Q Consensus 272 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~ 350 (922)
.+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++...| ++..+..++.+. ..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 4455555555555555555555555555555555555555555555555555555555555555 444333333221 12
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHhcCCHHHHHHH
Q 002431 351 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM--AEAHANLASAYKDSGHVEAAIKS 428 (922)
Q Consensus 351 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~ 428 (922)
.++..+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..++.++...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 2233346677777777777777777777777777777777777777777777654 45777777777777777777777
Q ss_pred HHHHHh
Q 002431 429 YKQALL 434 (922)
Q Consensus 429 ~~~al~ 434 (922)
|++++.
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-15 Score=134.71 Aligned_cols=118 Identities=20% Similarity=0.259 Sum_probs=78.4
Q ss_pred hhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002431 27 ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSN 106 (922)
Q Consensus 27 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 106 (922)
..+|+.++.+..+|..+++.|+|++|++.|+++++.+|.++.++..+|.++...|++++|+..|+++++++|+++.++..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 34566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002431 107 LASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL 144 (922)
Q Consensus 107 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 144 (922)
+|.++...|++++|++.|+++++++|++..++..++.+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 66666666666666666666666666666666655544
|
| >3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A | Back alignment and structure |
|---|
Probab=99.64 E-value=8.6e-16 Score=168.42 Aligned_cols=326 Identities=11% Similarity=0.077 Sum_probs=193.1
Q ss_pred cccceeeeecCCCCCChhHhhhhHHhhcCCCC-C-eEEEEEecCCCCChHHHHHHHhccCce-EECC----CCC------
Q 002431 534 LRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKE-N-VEVFCYALSPNDGTEWRQRTQSEAEHF-VDVS----AMS------ 600 (922)
Q Consensus 534 ~~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~-~-~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~------ 600 (922)
.++|||.++++.. +......++++.+.+. + +++++...+... +...+.++...... +.+. ..+
T Consensus 6 ~~~mkIl~v~~~~---~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (375)
T 3beo_A 6 TERLKVMTIFGTR---PEAIKMAPLVLELQKHPEKIESIVTVTAQHR-QMLDQVLSIFGITPDFDLNIMKDRQTLIDITT 81 (375)
T ss_dssp SSCEEEEEEECSH---HHHHHHHHHHHHHTTCTTTEEEEEEECCSSS-HHHHHHHHHHTCCCSEECCCCCTTCCHHHHHH
T ss_pred CcCceEEEEecCc---HHHHHHHHHHHHHHhCCCCCCeEEEEcCCCH-HHHHHHHHHcCCCCccccccCCCcccHHHHHH
Confidence 3468999998543 2222334555555443 3 888776655432 21222222222211 2221 122
Q ss_pred --HHHHHHHHHhCCCeEEEcCCCcCCCCc-hhhh----h-cCCCceEEeccccCCCC---CCCc--ccE---EEecCccC
Q 002431 601 --SDMIAKLINEDKIQILINLNGYTKGAR-NEIF----A-MQPAPIQVSYMGFPGTT---GASY--IDY---LVTDEFVS 664 (922)
Q Consensus 601 --~~~~~~~i~~~~~dil~~~~~~~~~~~-~~~~----~-~~~apvq~~~~g~~~t~---g~~~--~d~---~~~d~~~~ 664 (922)
...+.+.+++.++||+ |+++.. ..+. + ....|+..+..|..... ..+. +.. ..+|.+++
T Consensus 82 ~~~~~l~~~l~~~~pDvv-----~~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 156 (375)
T 3beo_A 82 RGLEGLDKVMKEAKPDIV-----LVHGDTTTTFIASLAAFYNQIPVGHVEAGLRTWDKYSPYPEEMNRQLTGVMADLHFS 156 (375)
T ss_dssp HHHHHHHHHHHHHCCSEE-----EEETTSHHHHHHHHHHHHTTCCEEEESCCCCCSCTTSSTTHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHhCCCEE-----EEeCCchHHHHHHHHHHHHCCCEEEEecccccccccCCChhHhhhhHHhhhhheeeC
Confidence 1247888899999999 555542 2222 2 23468765543321100 0110 000 12566666
Q ss_pred CcCccC-------CCccceeecCCccccCCCccccccCCCC-CCCCCcCCCCCCCCcEEEEecCCCC---CCCHHHHHHH
Q 002431 665 PLRYAH-------IYSEKLVHVPHCYFVNDYKQKNMDVLDP-NCQPKRSDYGLPEDKFIFACFNQLY---KMDPEIFNTW 733 (922)
Q Consensus 665 ~~~~~~-------~~~e~~~~lp~~~~~~~~~~~~~~~~~~-~~~~~r~~~~l~~~~~~~~~~~~~~---K~~~~~~~~~ 733 (922)
++.... ...+++..+|+..+.. ..+.... .....|.++ +++.+++++++|.. |+.+.++++|
T Consensus 157 ~s~~~~~~~~~~g~~~~~i~vi~n~~~d~-----~~~~~~~~~~~~~~~~~--~~~~~vl~~~gr~~~~~K~~~~li~a~ 229 (375)
T 3beo_A 157 PTAKSATNLQKENKDESRIFITGNTAIDA-----LKTTVKETYSHPVLEKL--GNNRLVLMTAHRRENLGEPMRNMFRAI 229 (375)
T ss_dssp SSHHHHHHHHHTTCCGGGEEECCCHHHHH-----HHHHCCSSCCCHHHHTT--TTSEEEEEECCCGGGTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCcccEEEECChhHhh-----hhhhhhhhhhHHHHHhc--cCCCeEEEEecccccchhHHHHHHHHH
Confidence 654321 1123455555432110 0000000 112234444 45567788888764 8899999999
Q ss_pred HHHHhhCCCeEEEEecCChhhHHHHHHHHHHc-CCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcC
Q 002431 734 CNILRRVPNSALWLLRFPAAGEMRLRAYAVAQ-GVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAG 812 (922)
Q Consensus 734 ~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~-g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g 812 (922)
.++.++.|+.++++ |.|+. ..+++.++++ +. .++|+|+|.++..+...+|+.+|+|+.|+ |.+++|||++|
T Consensus 230 ~~l~~~~~~~~~i~-~~g~~--~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~v~~s----g~~~lEA~a~G 301 (375)
T 3beo_A 230 KRLVDKHEDVQVVY-PVHMN--PVVRETANDILGD-YGRIHLIEPLDVIDFHNVAARSYLMLTDS----GGVQEEAPSLG 301 (375)
T ss_dssp HHHHHHCTTEEEEE-ECCSC--HHHHHHHHHHHTT-CTTEEEECCCCHHHHHHHHHTCSEEEECC----HHHHHHHHHHT
T ss_pred HHHHhhCCCeEEEE-eCCCC--HHHHHHHHHHhhc-cCCEEEeCCCCHHHHHHHHHhCcEEEECC----CChHHHHHhcC
Confidence 99988899998655 55543 2344444443 43 37999999988889999999999999887 55599999999
Q ss_pred CCeeeecC-CcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHH
Q 002431 813 LPMITLPL-EKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLER 891 (922)
Q Consensus 813 ~Pvv~~~~-~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 891 (922)
+|||+... ..... ++ .-| .+.++..|++++++++.++.+|++.+++++++.++.. ..|+++++++.+++
T Consensus 302 ~Pvi~~~~~~~~~e-----~v-~~g-~g~~v~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~ 371 (375)
T 3beo_A 302 VPVLVLRDTTERPE-----GI-EAG-TLKLAGTDEETIFSLADELLSDKEAHDKMSKASNPYG---DGRASERIVEAILK 371 (375)
T ss_dssp CCEEECSSCCSCHH-----HH-HTT-SEEECCSCHHHHHHHHHHHHHCHHHHHHHCCCCCTTC---CSCHHHHHHHHHHH
T ss_pred CCEEEecCCCCCce-----ee-cCC-ceEEcCCCHHHHHHHHHHHHhChHhHhhhhhcCCCCC---CCcHHHHHHHHHHH
Confidence 99997732 21221 22 235 4524446999999999999999999998887765543 35899999988887
Q ss_pred HH
Q 002431 892 SY 893 (922)
Q Consensus 892 ~y 893 (922)
.+
T Consensus 372 ~~ 373 (375)
T 3beo_A 372 HF 373 (375)
T ss_dssp HT
T ss_pred Hh
Confidence 65
|
| >2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-16 Score=150.28 Aligned_cols=155 Identities=14% Similarity=0.144 Sum_probs=121.2
Q ss_pred CCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHH--HcCCCCCceEEcCCCCc
Q 002431 705 SDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAV--AQGVQPDQIIFTDVAMK 780 (922)
Q Consensus 705 ~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~--~~g~~~~rv~f~~~~~~ 780 (922)
..+.++++.++|+.++++ .|+.+.++++|.++ |+.+|+++|.++. .+.+++.+. +.|+ .++|.|.|.++.
T Consensus 15 ~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~-~~~l~~~~~~~~~~l-~~~v~~~g~~~~ 88 (177)
T 2f9f_A 15 SKFKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSK-GDHAERYARKIMKIA-PDNVKFLGSVSE 88 (177)
T ss_dssp TTCCCCCCCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCT-TSTHHHHHHHHHHHS-CTTEEEEESCCH
T ss_pred cccccCCCCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCcc-HHHHHHHHHhhhccc-CCcEEEeCCCCH
Confidence 345567777777777765 59999999998875 8899999998876 567888888 8899 589999999999
Q ss_pred HHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcC
Q 002431 781 QEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALD 859 (922)
Q Consensus 781 ~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d 859 (922)
.+...+|+.+|+++.|+..+| |++++|||++|+|||+.+.......+ . -|..+.++..|.+++++++.++.+|
T Consensus 89 ~e~~~~~~~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i-----~-~~~~g~~~~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 89 EELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETV-----I-NEKTGYLVNADVNEIIDAMKKVSKN 162 (177)
T ss_dssp HHHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHC-----C-BTTTEEEECSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHh-----c-CCCccEEeCCCHHHHHHHHHHHHhC
Confidence 999999999999999987777 99999999999999976543222211 1 1334413358999999999999999
Q ss_pred HHH-HHHHHHHHH
Q 002431 860 RQK-LQALTNKLK 871 (922)
Q Consensus 860 ~~~-~~~~~~~~~ 871 (922)
++. ++++++..+
T Consensus 163 ~~~~~~~~~~~a~ 175 (177)
T 2f9f_A 163 PDKFKKDCFRRAK 175 (177)
T ss_dssp TTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 886 555555443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.1e-15 Score=154.99 Aligned_cols=169 Identities=12% Similarity=0.069 Sum_probs=149.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHH
Q 002431 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLA 345 (922)
Q Consensus 266 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 345 (922)
.|.+.+.+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|+........+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 47888888899999999999999999999999999999999999999999999999999999998888887666666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHhcCCHH
Q 002431 346 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM--AEAHANLASAYKDSGHVE 423 (922)
Q Consensus 346 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 423 (922)
..+...++.++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 778888888889999999999999999999999999999999999999999999999887 888999999999999999
Q ss_pred HHHHHHHHHHh
Q 002431 424 AAIKSYKQALL 434 (922)
Q Consensus 424 ~A~~~~~~al~ 434 (922)
+|...|++++.
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999988875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=145.46 Aligned_cols=165 Identities=13% Similarity=0.027 Sum_probs=85.8
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002431 31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110 (922)
Q Consensus 31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 110 (922)
...+.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+| ++..+..++.+
T Consensus 4 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~ 82 (176)
T 2r5s_A 4 SPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKL 82 (176)
T ss_dssp --CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHH
Confidence 33444555556666666666666666666666666666666666666666666666666666655555 44443333322
Q ss_pred HH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHcCCHHH
Q 002431 111 YM-RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF--AIAWSNLAGLFMESGDLNR 187 (922)
Q Consensus 111 ~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~ 187 (922)
.. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..++.++...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 11 11222234555555555555555555555555555555555555555555555443 3345555555555555555
Q ss_pred HHHHHHHHH
Q 002431 188 ALQYYKEAV 196 (922)
Q Consensus 188 A~~~~~~~l 196 (922)
|+..|++++
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=151.47 Aligned_cols=167 Identities=13% Similarity=0.036 Sum_probs=102.7
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS 109 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 109 (922)
|.+...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+........+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 55556666666666666666666666666666666666666666666666666666666666666666655544455555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHcCCHHH
Q 002431 110 AYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF--AIAWSNLAGLFMESGDLNR 187 (922)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~ 187 (922)
.+...++.++|+..+++++..+|++..+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 55555666666666666666666666666666666666666666666666666666655 5556666666666666666
Q ss_pred HHHHHHHHH
Q 002431 188 ALQYYKEAV 196 (922)
Q Consensus 188 A~~~~~~~l 196 (922)
|...|++.+
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665555554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=167.98 Aligned_cols=163 Identities=14% Similarity=0.040 Sum_probs=93.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 12 SGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYL 91 (922)
Q Consensus 12 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 91 (922)
.|++++|+..|+++++.+|.+..+++.+|.++...|++++|++.|+++++.+|++..++..+|.++...|++++|++.|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCc
Q 002431 92 VAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ---GLVQEAYSCYLEALRIQPTF 168 (922)
Q Consensus 92 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~ 168 (922)
++++.+|++..++..+|.++...|++++|++.|+++++.+|++..++..++.++... |++++|...++++++.+|.+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 666666666666666666666666666666666666666666666666666666666 66666666666666666655
Q ss_pred HHHHHH
Q 002431 169 AIAWSN 174 (922)
Q Consensus 169 ~~~~~~ 174 (922)
...+..
T Consensus 162 ~~~~~~ 167 (568)
T 2vsy_A 162 VEPFAF 167 (568)
T ss_dssp SCHHHH
T ss_pred cChHHH
Confidence 544443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.61 E-value=8.4e-16 Score=142.42 Aligned_cols=116 Identities=11% Similarity=0.048 Sum_probs=107.3
Q ss_pred HHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002431 325 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
..+++++..+|++..+++.+|.++.+.|++++|+..|+++++++|.++.+|..+|.++..+|++++|+..|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 34566777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 002431 405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 440 (922)
++.+++++|.+|..+|++++|+..|++++++.|+++
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999998865
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-14 Score=152.98 Aligned_cols=195 Identities=18% Similarity=0.142 Sum_probs=117.4
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 11 KSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQ-LHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRY 89 (922)
Q Consensus 11 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 89 (922)
..|++++|.++++++.+..+.. ++. .+++++|+..|.++ +.+|...|++++|+..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4678899999999888765532 122 57888888888775 5677888999999999
Q ss_pred HHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHH
Q 002431 90 YLVAIELRPN------FADAWSNLASAYMRKGRLNEAAQCCRQALALNPL--L----VDAHSNLGNLMKAQGLVQEAYSC 157 (922)
Q Consensus 90 ~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~ 157 (922)
|.++++..+. ...++..+|.+|...|++++|+..|++++++.+. + ..++..+|.++.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 9888876432 2446777777777778888888877777765321 1 2345556666655 666666666
Q ss_pred HHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChHHHHHH
Q 002431 158 YLEALRIQPTF------AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP------DAYLNLGNVYKALGMPQEAIMC 225 (922)
Q Consensus 158 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~ 225 (922)
|+++++..+.. ..++..+|.++...|++++|+..|++++++.+.+. ..+..++.++...|++++|+..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66665543321 23444455555555555555555555544332211 1333344444444444444444
Q ss_pred HHHHH
Q 002431 226 YQRAV 230 (922)
Q Consensus 226 ~~~~~ 230 (922)
|++++
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 44444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.1e-15 Score=149.37 Aligned_cols=203 Identities=13% Similarity=0.043 Sum_probs=176.5
Q ss_pred hHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhhCCCChH--------
Q 002431 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL-------GNALKDVGRVDEAIQCYNQCLSLQPSHPQ-------- 305 (922)
Q Consensus 241 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------- 305 (922)
..+..+ ..+++.+|.+.|.+++..+|+..++|..+ +.++...++..+++..+++.+++.|....
T Consensus 12 ~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 12 ESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGL 90 (282)
T ss_dssp HHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTT
T ss_pred HHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCc
Confidence 334444 57999999999999999999999999999 89999999999999999999997776443
Q ss_pred -------------HHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC-
Q 002431 306 -------------ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA- 371 (922)
Q Consensus 306 -------------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 371 (922)
+...++.++...|++++|.+.|+.+....|.+. ..+.++.++.+.+++++|+..|+++.+..+..
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence 344488899999999999999999999888888 99999999999999999999999887653221
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002431 372 -ADGLVNRGNTYKEIGRVTDAIQDYIRAITIR--PT-MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (922)
Q Consensus 372 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (922)
..+++.+|.++..+|++++|+..|++++... |. ..++++.+|.++.++|+.++|...|++++..+|+ +.+...|
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 4589999999999999999999999998654 55 6789999999999999999999999999999999 7766555
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-12 Score=142.15 Aligned_cols=209 Identities=10% Similarity=-0.029 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHh
Q 002431 253 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 332 (922)
Q Consensus 253 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 332 (922)
+.....|++++...|.....|...+..+...|+.++|..+|++++.. |.+...+...+... +.++....+.+...
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~----e~~~~~~~l~~~~~ 270 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM----DEEAVYGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT----TCTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc----chhHHHHHHHHHHH
Confidence 34566777777777777777777777777777778888888887777 77665555443331 11111111111110
Q ss_pred ----------cCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhh
Q 002431 333 ----------VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG-RVTDAIQDYIRAITI 401 (922)
Q Consensus 333 ----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~ 401 (922)
..+....+|...+..+.+.++.+.|..+|+++ +..+.....+...+......+ +.+.|..+|+.+++.
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 01112355777788877888899999999999 443345667776676666666 599999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHHHH
Q 002431 402 RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIR 471 (922)
Q Consensus 402 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 471 (922)
.|+.+..+...+....+.|+.+.|..+|+++ +.....|...+..-...|+.+.+..++++..+.++
T Consensus 350 ~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 350 HPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 8988888888888888899999999999997 34566777777666777887777777776666443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-14 Score=151.18 Aligned_cols=97 Identities=10% Similarity=0.098 Sum_probs=50.4
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc------HHH
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLA------ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM------AEA 408 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 408 (922)
+.++|.+|.. |++++|+.+|++++++.+.. ..++.++|.++..+|++++|+..|++++++.|++ ..+
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 3444444444 55555555555554443321 3345555555555555555555555555543221 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 409 HANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 409 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
+..++.++...|++++|+..|++++ ++|+.
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 5555556666666666666666666 55543
|
| >1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=158.19 Aligned_cols=320 Identities=9% Similarity=0.030 Sum_probs=186.4
Q ss_pred cceeeeecCCCCCChhHhhhhHHhhcCCCC-CeEEEEEecCCCCChHHHHHHHhccCce-EECCC----CC--------H
Q 002431 536 RLRVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEWRQRTQSEAEHF-VDVSA----MS--------S 601 (922)
Q Consensus 536 ~~rig~~s~~~~~h~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~--------~ 601 (922)
.+||.++++.. +......++++.+.+. ++|+++...+... ....+.++.....+ +++.- .+ .
T Consensus 5 mmkIl~v~~~~---~~~~~~~~l~~~L~~~~g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (376)
T 1v4v_A 5 MKRVVLAFGTR---PEATKMAPVYLALRGIPGLKPLVLLTGQHR-EQLRQALSLFGIQEDRNLDVMQERQALPDLAARIL 80 (376)
T ss_dssp CEEEEEEECSH---HHHHHHHHHHHHHHTSTTEEEEEEECSSCH-HHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHH
T ss_pred ceEEEEEEecc---HHHHHHHHHHHHHHhCCCCceEEEEcCCcH-HHHHHHHHHcCCCcccccccCCCCccHHHHHHHHH
Confidence 37899998642 2112345667777665 6888777655321 21233344433222 23321 11 1
Q ss_pred HHHHHHHHhCCCeEEEcCCCcCCCCch-----hhhh-cCCCceEEeccccCCCCCC-----C--ccc---EEEecCccCC
Q 002431 602 DMIAKLINEDKIQILINLNGYTKGARN-----EIFA-MQPAPIQVSYMGFPGTTGA-----S--YID---YLVTDEFVSP 665 (922)
Q Consensus 602 ~~~~~~i~~~~~dil~~~~~~~~~~~~-----~~~~-~~~apvq~~~~g~~~t~g~-----~--~~d---~~~~d~~~~~ 665 (922)
..+.+.+++.++||+ |+++... .+.+ ....|+..+..+. . ++. + .+. +..+|.++++
T Consensus 81 ~~l~~~l~~~~pDvv-----~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (376)
T 1v4v_A 81 PQAARALKEMGADYV-----LVHGDTLTTFAVAWAAFLEGIPVGHVEAGL-R-SGNLKEPFPEEANRRLTDVLTDLDFAP 153 (376)
T ss_dssp HHHHHHHHHTTCSEE-----EEESSCHHHHHHHHHHHHTTCCEEEETCCC-C-CSCTTSSTTHHHHHHHHHHHCSEEEES
T ss_pred HHHHHHHHHcCCCEE-----EEeCChHHHHHHHHHHHHhCCCEEEEeCCC-c-cccccCCCchHHHHHHHHHHhceeeCC
Confidence 357788899999999 5554321 1222 2345874332222 1 111 0 000 1234555555
Q ss_pred cCccC-------CCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHH
Q 002431 666 LRYAH-------IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNI 736 (922)
Q Consensus 666 ~~~~~-------~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~i 736 (922)
+.... .-.+++..+|+..+... .+ .+.....|.+++ ++.+++++++|. .|+.+.+++++.++
T Consensus 154 s~~~~~~l~~~g~~~~ki~vi~n~~~d~~-----~~--~~~~~~~~~~~~--~~~~vl~~~gr~~~~k~~~~ll~a~~~l 224 (376)
T 1v4v_A 154 TPLAKANLLKEGKREEGILVTGQTGVDAV-----LL--AAKLGRLPEGLP--EGPYVTVTMHRRENWPLLSDLAQALKRV 224 (376)
T ss_dssp SHHHHHHHHTTTCCGGGEEECCCHHHHHH-----HH--HHHHCCCCTTCC--SSCEEEECCCCGGGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCcceEEEECCchHHHH-----hh--hhhhhHHHHhcC--CCCEEEEEeCcccchHHHHHHHHHHHHH
Confidence 44311 11234444444221100 00 000112344443 455777778875 36899999999999
Q ss_pred HhhCCCeEEEEe-cCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCe
Q 002431 737 LRRVPNSALWLL-RFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPM 815 (922)
Q Consensus 737 l~~~p~~~l~~~-~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pv 815 (922)
.++.|+.+++++ |+++..++.+++.+. . .++|+|+|.++..+...+|+.+|+|+.++ ||+ ++|||++|+||
T Consensus 225 ~~~~~~~~lv~~~g~~~~~~~~l~~~~~---~-~~~v~~~g~~g~~~~~~~~~~ad~~v~~S---~g~-~lEA~a~G~Pv 296 (376)
T 1v4v_A 225 AEAFPHLTFVYPVHLNPVVREAVFPVLK---G-VRNFVLLDPLEYGSMAALMRASLLLVTDS---GGL-QEEGAALGVPV 296 (376)
T ss_dssp HHHCTTSEEEEECCSCHHHHHHHHHHHT---T-CTTEEEECCCCHHHHHHHHHTEEEEEESC---HHH-HHHHHHTTCCE
T ss_pred HhhCCCeEEEEECCCCHHHHHHHHHHhc---c-CCCEEEECCCCHHHHHHHHHhCcEEEECC---cCH-HHHHHHcCCCE
Confidence 888999998885 666533566666542 2 36899998888778899999999999887 555 78999999999
Q ss_pred eeecC-CcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 816 ITLPL-EKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 816 v~~~~-~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
|+.+. ..... ++ ..|. ..++..|++++++++.++++|++.++++++. ...|.....++++.+.+.
T Consensus 297 I~~~~~~~~~~-----~~-~~g~-g~lv~~d~~~la~~i~~ll~d~~~~~~~~~~-------~~~~~~~~~~~~i~~~i~ 362 (376)
T 1v4v_A 297 VVLRNVTERPE-----GL-KAGI-LKLAGTDPEGVYRVVKGLLENPEELSRMRKA-------KNPYGDGKAGLMVARGVA 362 (376)
T ss_dssp EECSSSCSCHH-----HH-HHTS-EEECCSCHHHHHHHHHHHHTCHHHHHHHHHS-------CCSSCCSCHHHHHHHHHH
T ss_pred EeccCCCcchh-----hh-cCCc-eEECCCCHHHHHHHHHHHHhChHhhhhhccc-------CCCCCCChHHHHHHHHHH
Confidence 97532 11222 12 1242 3144379999999999999999988888752 123555556666666665
Q ss_pred HHH
Q 002431 895 KMW 897 (922)
Q Consensus 895 ~~~ 897 (922)
+..
T Consensus 363 ~~~ 365 (376)
T 1v4v_A 363 WRL 365 (376)
T ss_dssp HHT
T ss_pred HHh
Confidence 544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.4e-14 Score=138.42 Aligned_cols=176 Identities=15% Similarity=0.088 Sum_probs=145.1
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcC----ChhHHHHHHHH
Q 002431 254 MAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN----MLPAAASYYKA 329 (922)
Q Consensus 254 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~ 329 (922)
+|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 466777777654 56778888888888888888888888888765 567888888888887 6 78888888888
Q ss_pred HHhcCCCCchhhhhHHHHHHH----cCCHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHH----hCCHHHHHHHHHHHH
Q 002431 330 TLAVTTGLSAPFNNLAVIYKQ----QGNYADAISCYNEVLRIDP--LAADGLVNRGNTYKE----IGRVTDAIQDYIRAI 399 (922)
Q Consensus 330 a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al 399 (922)
+.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..+ .++.+++.+|.+|.. .+++++|+.+|+++.
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 854 4678888888888887 8899999999999998877 358899999999998 889999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCC
Q 002431 400 TIRPTMAEAHANLASAYKDS-G-----HVEAAIKSYKQALLLRP 437 (922)
Q Consensus 400 ~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p 437 (922)
+. +.++.+++.||.+|... | ++++|+.+|+++.+.+.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66677899999999864 3 89999999999988764
|
| >3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.2e-15 Score=165.44 Aligned_cols=175 Identities=13% Similarity=0.063 Sum_probs=123.5
Q ss_pred CcCCCCCC--CCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCCeEEEEecCChhh-HHHHHHHHHHcCCCCCceEEcCC
Q 002431 703 KRSDYGLP--EDKFIFACFNQLY--KMDPEIFNTWCNILRRVPNSALWLLRFPAAG-EMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 703 ~r~~~~l~--~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
++.++||+ ++.++|++++|+. |+.+.+++++.++++. +..|+|+|.|+.. ...++.... +. .++|.|.+.
T Consensus 315 l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~--~~~l~l~G~G~~~~~~~~~~~~~--~~-~~~v~~~~~ 389 (536)
T 3vue_A 315 LQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQE--DVQIVLLGTGKKKFEKLLKSMEE--KY-PGKVRAVVK 389 (536)
T ss_dssp HHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTTS--SCEEEEECCBCHHHHHHHHHHHH--HS-TTTEEEECS
T ss_pred HHHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhHhh--CCeEEEEeccCchHHHHHHHHHh--hc-CCceEEEEe
Confidence 34566775 4668999999874 9999999999999765 4567777776542 234444444 44 478999998
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhc--CCCCcc----------cc-
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLAT--GLGEEM----------IV- 843 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~--g~~~~~----------i~- 843 (922)
.+..+...+|+.+||||.||.+|| |++.+|||++|+|||+ +++|+ +-..+ |.++ + +.
T Consensus 390 ~~~~~~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~-------s~~gG-~~e~V~dg~~G-~~~~~~~~~g~l~~ 460 (536)
T 3vue_A 390 FNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCAC-------ASTGG-LVDTVIEGKTG-FHMGRLSVDCKVVE 460 (536)
T ss_dssp CCHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEE-------CSCTH-HHHHCCBTTTE-EECCCCCSCTTCCC
T ss_pred ccHHHHHHHHHhhheeecccccCCCCHHHHHHHHcCCCEEE-------cCCCC-chheeeCCCCc-cccccCCCceeEEC
Confidence 888888888999999999999999 9999999999999995 45551 11111 2222 1 11
Q ss_pred -CCHHHHHHHHHH---HhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 002431 844 -NSMKEYEERAVS---LALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 897 (922)
Q Consensus 844 -~~~~~~~~~~~~---l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 897 (922)
.|++++++++.+ +..++.++ +++++..+ ..||+++.|++.+++|+++.
T Consensus 461 ~~d~~~la~ai~ral~~~~~~~~~-~~~~~am~-----~~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 461 PSDVKKVAATLKRAIKVVGTPAYE-EMVRNCMN-----QDLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp HHHHHHHHHHHHHHHHHTTSHHHH-HHHHHHHH-----SCCSSHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhcCcHHHH-HHHHHHHH-----hcCCHHHHHHHHHHHHHHhh
Confidence 256777766644 44555543 34333222 24999999999999999873
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-13 Score=138.43 Aligned_cols=245 Identities=13% Similarity=0.033 Sum_probs=159.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHH
Q 002431 179 FMESGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAIL 257 (922)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 257 (922)
.+-.|+|..++.-.. +..|.+ ......+.++|..+|++.... ...|...+...++..+ . ++ |+.
T Consensus 23 ~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~~~~~~~a~~~la~~~-~-~~---a~~ 87 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD-------PTSKLGKVLDLYVQFL-D-TK---NIE 87 (310)
T ss_dssp HHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC-------SSSTTHHHHHHHHHHH-T-TT---CCH
T ss_pred HHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC-------CCCHHHHHHHHHHHHh-c-cc---HHH
Confidence 344566666665322 222222 224444556666666655311 1112222333333332 1 22 666
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCC
Q 002431 258 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP--SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 335 (922)
Q Consensus 258 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 335 (922)
.+++.+...+....++..+|.++...|++++|++.+.+.+..+| .+.+++..++.++.+.|+.+.|.+.++++.+.+|
T Consensus 88 ~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 88 ELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp HHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 67766655444455566777777777777777777777777665 6667777777777777777777777777777766
Q ss_pred C----CchhhhhH--HHHHHHcC--CHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh----
Q 002431 336 G----LSAPFNNL--AVIYKQQG--NYADAISCYNEVLRIDPL--AADGLVNRGNTYKEIGRVTDAIQDYIRAITI---- 401 (922)
Q Consensus 336 ~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 401 (922)
+ +..+...+ +.+....| ++.+|..+|+++.+..|+ ....+++ ++.++|++++|...++.+++.
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccc
Confidence 2 22233333 33344445 888888888888877776 2334444 888899999999999877776
Q ss_pred ------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 402 ------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 402 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
+|+++.++.+++.+....|+ +|.++++++.+..|+++.+.
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 48889999888888888887 88999999999999988664
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=134.41 Aligned_cols=113 Identities=16% Similarity=0.081 Sum_probs=66.1
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002431 56 NEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV 135 (922)
Q Consensus 56 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 135 (922)
++++++.+|++..+++.+|.++.+.|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|+++
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 002431 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF 168 (922)
Q Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 168 (922)
.+++.+|.++...|++++|+..|+++++..|+.
T Consensus 105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 555555555555555555555555555555554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=146.08 Aligned_cols=203 Identities=13% Similarity=-0.013 Sum_probs=116.0
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCCc----------
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLL-------GAIYYQLHDYDMCIARNEEALRLEPRF---------- 66 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~---------- 66 (922)
..|..+ ..+++.+|.+.|.+++..+|...++|..+ +.++...++..+++..+.+.+.+.|..
T Consensus 12 ~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 12 ESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGL 90 (282)
T ss_dssp HHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTT
T ss_pred HHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCc
Confidence 334443 45666666666666666666666666666 566666666666666666666655432
Q ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 002431 67 -----------AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL- 134 (922)
Q Consensus 67 -----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~- 134 (922)
......++.++...|++++|.+.|..++...|++. +.+.++.++.+.+++++|+..|+++.+..++.
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence 12333455566666666666666666665556555 66666666666666666666665554332111
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002431 135 -VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ--PT-FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNL 209 (922)
Q Consensus 135 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 209 (922)
..+++.+|.++...|++++|+..|++++... |. ...+++.+|.++.++|+.++|...|++++..+|+ ..+...|
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 2355666666666666666666666665332 33 4445566666666666666666666666666665 4444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-16 Score=166.66 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCC---------------chhhhhHHHHH
Q 002431 284 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL---------------SAPFNNLAVIY 348 (922)
Q Consensus 284 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~ 348 (922)
+++++|+..++++++..|.+..++..+|.++...|++++|+..|++++...|.+ ..++.++|.++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555555555555555555555555555555554 35666677777
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHH-HH
Q 002431 349 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA-IK 427 (922)
Q Consensus 349 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~ 427 (922)
.++|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|++++| ..
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 286 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKK 286 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777776666 44
Q ss_pred HHHHHHh
Q 002431 428 SYKQALL 434 (922)
Q Consensus 428 ~~~~al~ 434 (922)
.|++++.
T Consensus 287 ~~~~~~~ 293 (336)
T 1p5q_A 287 LYANMFE 293 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-15 Score=162.25 Aligned_cols=147 Identities=14% Similarity=0.079 Sum_probs=112.7
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCC-------CceEEcCCCCcHHHHHhccCCcEE
Q 002431 721 QLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQP-------DQIIFTDVAMKQEHIRRSSLADLF 793 (922)
Q Consensus 721 ~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~-------~rv~f~~~~~~~~~~~~~~~~dv~ 793 (922)
+..|+.+.++++|.++.++.|+.+|+|+|+|+...+.+++.+++.|+.. ++|.|.|. ..+...+|+.+||+
T Consensus 204 ~~~k~~~~ll~A~~~l~~~~p~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~--~~dl~~~y~~aDv~ 281 (374)
T 2xci_A 204 IHTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDR--FGILKELYPVGKIA 281 (374)
T ss_dssp ECGGGHHHHHHHHHHHHTTCTTCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCS--SSCHHHHGGGEEEE
T ss_pred CCCchHHHHHHHHHHHHhhCCCcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECC--HHHHHHHHHhCCEE
Confidence 4578999999999999999999999999998873468999999999841 47888885 35778889999997
Q ss_pred ecCC-CCC-ChhHHHHHHHcCCCeeeec-CCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002431 794 LDTP-LCN-AHTTGTDILWAGLPMITLP-LEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKL 870 (922)
Q Consensus 794 l~~~-~~~-g~~t~~eal~~g~Pvv~~~-~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~ 870 (922)
+-|+ ..+ ||.+++|||+||+|||+-+ ...+.+-+. .+...|. - +...|++++++++.+|++| +.+++|+++.
T Consensus 282 vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~--~~~~~G~-l-~~~~d~~~La~ai~~ll~d-~~r~~mg~~a 356 (374)
T 2xci_A 282 IVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKE--FLEKEGA-G-FEVKNETELVTKLTELLSV-KKEIKVEEKS 356 (374)
T ss_dssp EECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHH--HHHHTTC-E-EECCSHHHHHHHHHHHHHS-CCCCCHHHHH
T ss_pred EECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHH--HHHHCCC-E-EEeCCHHHHHHHHHHHHhH-HHHHHHHHHH
Confidence 6654 333 5899999999999999632 122222121 1112243 1 3457999999999999999 9999999998
Q ss_pred Hhhc
Q 002431 871 KSVR 874 (922)
Q Consensus 871 ~~~~ 874 (922)
|+..
T Consensus 357 r~~~ 360 (374)
T 2xci_A 357 REIK 360 (374)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.55 E-value=8.7e-12 Score=140.12 Aligned_cols=374 Identities=10% Similarity=-0.061 Sum_probs=226.1
Q ss_pred HcC-CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHH
Q 002431 11 KSG-SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD-IDLAIR 88 (922)
Q Consensus 11 ~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~ 88 (922)
+.| +++.|..+|++++...|. |+++.+..+|++++...| +...|........+.++ .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 377888888888877765 788999999999988877 66777777777666663 355677
Q ss_pred HHHHHHhc---CCCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 002431 89 YYLVAIEL---RPNFADAWSNLASAYM----RKGRLNEAAQCCRQALALNPLLVDA-HSNLGNLMKAQGLVQEAYSCYLE 160 (922)
Q Consensus 89 ~~~~al~~---~p~~~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~ 160 (922)
.|+.++.. ++.+...|...+..+. .+++.+.+..+|++++.....+.+- |......... .+...+.....+
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~ 148 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGD 148 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHH
Confidence 78888764 5677788887777654 3467788888899988853333332 2222111111 111111111111
Q ss_pred HHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc--CC-----hHHHHHHHHHHHhh
Q 002431 161 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT-FPDAYLNLGNVYKAL--GM-----PQEAIMCYQRAVQT 232 (922)
Q Consensus 161 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~--g~-----~~~A~~~~~~~~~~ 232 (922)
.. ..+..|...++.+....+. +...|......-... +- .+.....|++++..
T Consensus 149 ~~--------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~ 208 (493)
T 2uy1_A 149 TL--------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS 208 (493)
T ss_dssp HH--------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred Hh--------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc
Confidence 00 1122222222222221111 222333332222111 00 22344556666555
Q ss_pred CCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------
Q 002431 233 RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL------------ 299 (922)
Q Consensus 233 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------ 299 (922)
.|. ...|...+..+...|+.++|...|++++.. |.+...+...+... +.+ +. ++++.+.
T Consensus 209 ~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~---~~~l~~~~~~~~~~~~~~~ 280 (493)
T 2uy1_A 209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AV---YGDLKRKYSMGEAESAEKV 280 (493)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HH---HHHHHHHTC----------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HH---HHHHHHHHHhhccchhhhh
Confidence 554 555555565556666666666666666655 55544444333221 111 11 1111110
Q ss_pred -CCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHH
Q 002431 300 -QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG-NYADAISCYNEVLRIDPLAADGLVN 377 (922)
Q Consensus 300 -~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~ 377 (922)
.+....+|...+....+.+..+.|..+|+++ ...+.....|...+.+....+ +.+.|..+|+.+++..|+++..+..
T Consensus 281 ~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~ 359 (493)
T 2uy1_A 281 FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEE 359 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence 0112356777777777788899999999999 433334456666666665555 6999999999999999999988888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002431 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434 (922)
Q Consensus 378 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 434 (922)
.+......|+.+.|...|+++ +.....|......-...|+.+.+..+++++++
T Consensus 360 yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888889999999999999998 34678888888888889999999999999986
|
| >2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.7e-15 Score=162.48 Aligned_cols=143 Identities=8% Similarity=0.016 Sum_probs=115.4
Q ss_pred EEEEecCCCC--CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 714 FIFACFNQLY--KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 714 ~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
++++.++|+. |+. +..+.+..|+.+|+|+|+|+ ++++|+ .++|+|+|.++.++...+|+.+|
T Consensus 223 ~~i~~vGrl~~~Kg~------~~~l~~~~~~~~l~ivG~g~---------~~~~~l-~~~V~f~G~~~~~~l~~~~~~ad 286 (406)
T 2hy7_A 223 IHAVAVGSMLFDPEF------FVVASKAFPQVTFHVIGSGM---------GRHPGY-GDNVIVYGEMKHAQTIGYIKHAR 286 (406)
T ss_dssp EEEEEECCTTBCHHH------HHHHHHHCTTEEEEEESCSS---------CCCTTC-CTTEEEECCCCHHHHHHHHHTCS
T ss_pred cEEEEEeccccccCH------HHHHHHhCCCeEEEEEeCch---------HHhcCC-CCCEEEcCCCCHHHHHHHHHhcC
Confidence 6778888775 554 66677788999999999876 556788 58999999999999999999999
Q ss_pred EEecCCCCCC-hhHHHHHH-------HcCCCeeeecCCcchhhhHHHHHHhcCCCCcc-c-cCCHHHHHHHHHHHhcCHH
Q 002431 792 LFLDTPLCNA-HTTGTDIL-------WAGLPMITLPLEKMATRVAGSLCLATGLGEEM-I-VNSMKEYEERAVSLALDRQ 861 (922)
Q Consensus 792 v~l~~~~~~g-~~t~~eal-------~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~-i-~~~~~~~~~~~~~l~~d~~ 861 (922)
|||.|+.++| |++++||| +||+|||+.+. + . -|..+.+ + ..|++++++++.+++.|++
T Consensus 287 v~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v-----~-~~~~G~l~v~~~d~~~la~ai~~ll~~~~ 354 (406)
T 2hy7_A 287 FGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA------V-----V-GPYKSRFGYTPGNADSVIAAITQALEAPR 354 (406)
T ss_dssp EEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------G-----T-CSCSSEEEECTTCHHHHHHHHHHHHHCCC
T ss_pred EEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh------c-----c-cCcceEEEeCCCCHHHHHHHHHHHHhCcc
Confidence 9999999888 99999999 99999997543 1 1 1444413 2 3699999999999998887
Q ss_pred HHHHHHHHHHhhcccCCCCChHHHHHHHHHH--HHHH
Q 002431 862 KLQALTNKLKSVRLTCPLFDTARWVKNLERS--YFKM 896 (922)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--y~~~ 896 (922)
+. . ...|+++.++++++++ |+++
T Consensus 355 ---------~~-~--~~~~sw~~~a~~~~~~~~y~~~ 379 (406)
T 2hy7_A 355 ---------VR-Y--RQCLNWSDTTDRVLDPRAYPET 379 (406)
T ss_dssp ---------CC-C--SCCCBHHHHHHHHHCGGGSGGG
T ss_pred ---------hh-h--hhcCCHHHHHHHHHHhhccccc
Confidence 11 2 4569999999999999 7654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-15 Score=161.82 Aligned_cols=154 Identities=14% Similarity=0.166 Sum_probs=142.1
Q ss_pred HcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC---------------HHHHHHHHH
Q 002431 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---------------ADGLVNRGN 380 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~ 380 (922)
..+++++|+..+++++...|....++..+|.++...|++++|+..|+++++++|.+ ..++.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888889999999999999999999999999999999999998 689999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHh
Q 002431 381 TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRD 460 (922)
Q Consensus 381 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 460 (922)
++.++|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|+++++++|++..++.++..++...++++++.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888774
Q ss_pred -HHHHHHHHH
Q 002431 461 -RMFSEVEGI 469 (922)
Q Consensus 461 -~~~~~~~~~ 469 (922)
..+.++...
T Consensus 285 ~~~~~~~~~~ 294 (336)
T 1p5q_A 285 KKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 345555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-14 Score=148.43 Aligned_cols=197 Identities=13% Similarity=0.006 Sum_probs=128.3
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS 109 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 109 (922)
|.+...+..+|..++..|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..++++++.+|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45567777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 110 AYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189 (922)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 189 (922)
++...|++++|+..|+++++.+|++...+......... ..++...........+.+..+...++.++ .|++++|+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 88888888888888888877766542211111111111 11122222222234455555555554443 56667777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHh
Q 002431 190 QYYKEAVKLKPTFPDAYLNLGNVYKAL-GMPQEAIMCYQRAVQ 231 (922)
Q Consensus 190 ~~~~~~l~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 231 (922)
+.++++++.+|++......+...+... +.+++|.+.|.++.+
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777777666665555555555554 556666666666554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-13 Score=123.11 Aligned_cols=133 Identities=36% Similarity=0.587 Sum_probs=101.7
Q ss_pred HHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 002431 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385 (922)
Q Consensus 306 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 385 (922)
+++.+|.++...|++++|...++++++..|.+...+..++.++...|++++|+..++++++..|.+...+..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 45566666666777777777777776666666667777777777777777777777777777777777777788888888
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 386 GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 386 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
|++++|+..++++++..|.+..++..++.++...|++++|...++++++.+|+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88888888888888888777778888888888888888888888888877765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-14 Score=132.36 Aligned_cols=119 Identities=17% Similarity=0.162 Sum_probs=109.6
Q ss_pred HHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 002431 324 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403 (922)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 403 (922)
...|++++..+|++...++.+|..+...|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34677888888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 404 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 404 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
+++.+++.+|.+|...|++++|+..|+++++++|+++..
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 999999999999999999999999999999999987654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.52 E-value=7.5e-14 Score=145.49 Aligned_cols=195 Identities=12% Similarity=0.019 Sum_probs=135.5
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
...+..+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..++++++.+|++..+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45666677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002431 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 395 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 395 (922)
..|++++|+..|+++++.+|++...+...+..... ..++...........+.+......++..+ .|++++|++.+
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~ 158 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEEC 158 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHH
Confidence 77777777777777777777655444433333332 22223333333345566666666666554 67888888888
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 002431 396 IRAITIRPTMAEAHANLASAYKDS-GHVEAAIKSYKQALLL 435 (922)
Q Consensus 396 ~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 435 (922)
+++++.+|++......+...+.+. +.+++|.+.|.++.+.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888888777777777777666 6677888888877654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=6e-13 Score=132.24 Aligned_cols=174 Identities=14% Similarity=0.034 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHH
Q 002431 17 QALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG----DIDLAIRYYLV 92 (922)
Q Consensus 17 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~ 92 (922)
+|++.|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 456666666654 45667777777777777777777777776654 456666677776666 5 66777777766
Q ss_pred HHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 002431 93 AIELRPNFADAWSNLASAYMR----KGRLNEAAQCCRQALALNP--LLVDAHSNLGNLMKA----QGLVQEAYSCYLEAL 162 (922)
Q Consensus 93 al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al 162 (922)
+.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+.++ .++.+++.+|.+|.. .+++++|+..|+++.
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 643 3456666666666665 6666666666666666555 235666666666666 556666666666666
Q ss_pred hhCCCcHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhc
Q 002431 163 RIQPTFAIAWSNLAGLFMES-G-----DLNRALQYYKEAVKL 198 (922)
Q Consensus 163 ~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~~l~~ 198 (922)
+. +.++.+++.++.+|... | ++++|+.+|+++.+.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 55 44455566666666543 2 566666666666554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.51 E-value=9.6e-13 Score=119.76 Aligned_cols=131 Identities=43% Similarity=0.675 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 115 (922)
++.+|.++...|++++|+..++++++..|.+...+..+|.++...|++++|+..++++++..|.+..++..++.++...|
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 44444444444555555555554444444444444444444444445555555554444444444444444444444444
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002431 116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166 (922)
Q Consensus 116 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 166 (922)
++++|+..++++++..|.+..++..++.++...|++++|...+++++..+|
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 444444444444444444444444444444444444444444444444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-14 Score=130.88 Aligned_cols=118 Identities=17% Similarity=0.073 Sum_probs=89.9
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002431 20 EHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99 (922)
Q Consensus 20 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 99 (922)
..|++++..+|.+..+++.+|.+++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002431 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDA 137 (922)
Q Consensus 100 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 137 (922)
++.+++.+|.++...|++++|+..|+++++.+|+++..
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 77777777777777777777777777777777665543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-12 Score=131.41 Aligned_cols=248 Identities=10% Similarity=-0.023 Sum_probs=153.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 002431 42 IYYQLHDYDMCIARNEEALRLEPRF-AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120 (922)
Q Consensus 42 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 120 (922)
-.+..|+|..++.... +..|.+ ....+.+.++|..+|++.... ...| ...+...++..+ . ++ |
T Consensus 22 n~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~~~~-~~~a~~~la~~~-~-~~---a 85 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD-------PTSK-LGKVLDLYVQFL-D-TK---N 85 (310)
T ss_dssp HHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC-------SSST-THHHHHHHHHHH-T-TT---C
T ss_pred HHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC-------CCCH-HHHHHHHHHHHh-c-cc---H
Confidence 4456677777776332 233332 234455566666666665311 1111 222333333333 2 22 6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002431 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP--TFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198 (922)
Q Consensus 121 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (922)
+..+++.+...+.....+..+|.++...|++++|++.+.+.+..+| .+..++..++.++.+.|+.+.|.+.++++.+.
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6777777666555556666777777777777777777777777665 67777777777777777777777777777777
Q ss_pred CCC----CHHHHHHHHHH--HHHcC--ChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhc-----
Q 002431 199 KPT----FPDAYLNLGNV--YKALG--MPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGC----- 265 (922)
Q Consensus 199 ~p~----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----- 265 (922)
+|+ +..+...++.. ....| ++.+|..+|+++.+..|+......+-.++..+|++++|...++.+++.
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~ 245 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVE 245 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 662 12333333333 44444 777777777777777765111111111677777788777777766654
Q ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 002431 266 -----DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307 (922)
Q Consensus 266 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (922)
+|++++++.+++.+....|+ +|.++++++.+..|+++.+.
T Consensus 246 ~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 246 QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 47777777777777777776 77788888888888777543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=157.52 Aligned_cols=188 Identities=10% Similarity=0.086 Sum_probs=146.5
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcC--
Q 002431 251 QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR----------VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN-- 318 (922)
Q Consensus 251 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-- 318 (922)
..++|++.+++++..+|++..+|+..+.++...++ ++++++.++++++.+|++..+|...+.++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 34567888888888888888888888888887777 788888888888888888888888888888888
Q ss_pred ChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh------------
Q 002431 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG-NYADAISCYNEVLRIDPLAADGLVNRGNTYKEI------------ 385 (922)
Q Consensus 319 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~------------ 385 (922)
++++++..++++++.+|.+..+|+..+.++...| .+++++++++++++.+|.+..+|..++.++..+
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 5588888888888888888888888888888887 788888888888888888888888888887775
Q ss_pred --CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHH------------HHHHHHHHHhcCCC
Q 002431 386 --GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEA------------AIKSYKQALLLRPD 438 (922)
Q Consensus 386 --g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al~~~p~ 438 (922)
+.+++|++++.+++..+|++..+|+.++.++.+.+++++ |+..|.++++++|.
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred cHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 456777777778887788777777777777777776555 44455566655554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=126.65 Aligned_cols=120 Identities=16% Similarity=0.057 Sum_probs=89.6
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002431 20 EHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99 (922)
Q Consensus 20 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 99 (922)
..|++++..+|++...++.+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 35666677777777777777878888888888888888887777777777777788887788888888888887777777
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002431 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHS 139 (922)
Q Consensus 100 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 139 (922)
++.+++.+|.++...|++++|+..|+++++.+|+++....
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 7777777777777777777777777777777776655433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=126.68 Aligned_cols=119 Identities=15% Similarity=0.162 Sum_probs=104.7
Q ss_pred HHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002431 325 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
..|++++..+|++...++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45667777888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
++.+++.+|.+|...|++++|+..|+++++++|+++...
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchH
Confidence 999999999999999999999999999999998877543
|
| >1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=150.55 Aligned_cols=178 Identities=13% Similarity=0.090 Sum_probs=133.6
Q ss_pred CcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCC----eEEEEecCC-----hh---hHHHHHHHHHHc---
Q 002431 703 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFP-----AA---GEMRLRAYAVAQ--- 765 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~-----~~---~~~~l~~~~~~~--- 765 (922)
+|+++| +..++++++|+. |+.+.++++|.+++++.|+ .+|+++|.+ +. .++.+++.+.+.
T Consensus 248 lr~~~~---~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~ 324 (482)
T 1uqt_A 248 LKAELK---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGK 324 (482)
T ss_dssp HHHHTT---TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC---CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhh
Confidence 566676 457788888874 9999999999999999885 678888853 21 123444444432
Q ss_pred -CCC-CCceE-EcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCC-----CeeeecCCcchhhhHHHHHHhcC
Q 002431 766 -GVQ-PDQII-FTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGL-----PMITLPLEKMATRVAGSLCLATG 836 (922)
Q Consensus 766 -g~~-~~rv~-f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~-----Pvv~~~~~~~~~r~~~~~~~~~g 836 (922)
|.. ...|+ |.|.++..+..++|+.+||||.||.++| |++++|||+||+ |||+......+.-+ .
T Consensus 325 ~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l--------~ 396 (482)
T 1uqt_A 325 YGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL--------T 396 (482)
T ss_dssp HCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTC--------T
T ss_pred cccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHh--------C
Confidence 321 12466 5788999999999999999999999999 999999999998 78854321111111 1
Q ss_pred CCCcccc--CCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 002431 837 LGEEMIV--NSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKM 896 (922)
Q Consensus 837 ~~~~~i~--~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 896 (922)
.. +++ .|++++++++.++++ +++.++++.+++++++.. ||.+.+++.+.+.|+++
T Consensus 397 -~g-~lv~p~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~---~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 397 -SA-LIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVK---NDINHWQECFISDLKQI 454 (482)
T ss_dssp -TS-EEECTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHS
T ss_pred -Ce-EEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhc
Confidence 23 333 489999999999998 467788888888888754 99999999999999775
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-13 Score=130.85 Aligned_cols=130 Identities=22% Similarity=0.259 Sum_probs=96.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHcCCH--
Q 002431 7 HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANA-WKEKGDI-- 83 (922)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~-- 83 (922)
..+...|++++|+..++++++.+|.+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.+ +...|++
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3355667777777778777777777777777778777777888888888877777777777777777777 6677777
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002431 84 DLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVD 136 (922)
Q Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 136 (922)
++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 77777777777777777777777777777777777777777777777776644
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=135.74 Aligned_cols=155 Identities=16% Similarity=0.172 Sum_probs=93.3
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCc----------------hhhhhH
Q 002431 281 KDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS----------------APFNNL 344 (922)
Q Consensus 281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------~~~~~l 344 (922)
...|+++++.+.++...+..+.....+..+|..+...|++++|+..|++++...|.++ .++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 3334444444444333333333334444445555555555555555555555444443 567778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHH
Q 002431 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEA 424 (922)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 424 (922)
|.++...|++++|+..++++++.+|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++.++
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888887777776
Q ss_pred HH-HHHHHHHhc
Q 002431 425 AI-KSYKQALLL 435 (922)
Q Consensus 425 A~-~~~~~al~~ 435 (922)
+. ..|.+++..
T Consensus 175 ~~~~~~~~~f~~ 186 (198)
T 2fbn_A 175 KDKLTFGGMFDK 186 (198)
T ss_dssp ------------
T ss_pred HHHHHHHHHhcc
Confidence 66 455555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-12 Score=146.69 Aligned_cols=174 Identities=10% Similarity=0.030 Sum_probs=164.6
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCC----------hhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcC--
Q 002431 285 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM----------LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG-- 352 (922)
Q Consensus 285 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-- 352 (922)
..++|++.+++++..+|++..+|+..+.++...++ +++++..++++++.+|++..+|+..+.++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 44788999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc------------
Q 002431 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG-RVTDAIQDYIRAITIRPTMAEAHANLASAYKDS------------ 419 (922)
Q Consensus 353 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------------ 419 (922)
++++|+++++++++.+|.+..+|..++.++...| .++++++++.++++.+|.+..+|+.++.++.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 7799999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred --CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhh
Q 002431 420 --GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWED 458 (922)
Q Consensus 420 --g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 458 (922)
+.+++|++++++++..+|++..+|+.+...+...++.++
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999988888776544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-12 Score=116.18 Aligned_cols=112 Identities=21% Similarity=0.189 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
+..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALN------PLLVDAHSNLGNL 144 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~ 144 (922)
..|++++|+..|+++++.+ |.+..++..+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 5555555555555555555 5444444444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-12 Score=133.24 Aligned_cols=166 Identities=16% Similarity=0.073 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh------HHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCC------
Q 002431 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP------QALTNLGNIYMEWNMLPAAASYYKATLAVTTGL------ 337 (922)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------ 337 (922)
...+...+..+...|++++|++.++++++..+... ..+..+|.++...|++++|+..+++++...+..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555667777788888888888888887766543 235567777788888888888888888764432
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHH---ccCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------
Q 002431 338 SAPFNNLAVIYKQQGNYADAISCYNEVL---RIDPLAA----DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT------ 404 (922)
Q Consensus 338 ~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------ 404 (922)
..+++.+|.+|...|++++|+.+|++++ +..|++. .+++++|.+|..+|++++|+..+++++++.++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4478888999999999999999999998 4455543 58889999999999999999999999887532
Q ss_pred cHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 002431 405 MAEAHANLASAYKDSGHVEAA-IKSYKQALLL 435 (922)
Q Consensus 405 ~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 435 (922)
...+++++|.+|.+.|++++| ..+|++++.+
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 267899999999999999999 7889998865
|
| >3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-12 Score=142.75 Aligned_cols=324 Identities=11% Similarity=0.025 Sum_probs=186.4
Q ss_pred CCcccceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCC-------------
Q 002431 532 GGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA------------- 598 (922)
Q Consensus 532 ~~~~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 598 (922)
...++|||.+++.....|- .-+.++.+.+.+.++||.+++... +.+.+...+..++.++.
T Consensus 16 ~~~~~MrIl~~~~~~~Gh~--~~~~~la~~L~~~GheV~v~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 88 (412)
T 3otg_A 16 IEGRHMRVLFASLGTHGHT--YPLLPLATAARAAGHEVTFATGEG-----FAGTLRKLGFEPVATGMPVFDGFLAALRIR 88 (412)
T ss_dssp --CCSCEEEEECCSSHHHH--GGGHHHHHHHHHTTCEEEEEECGG-----GHHHHHHTTCEEEECCCCHHHHHHHHHHHH
T ss_pred cccceeEEEEEcCCCcccH--HHHHHHHHHHHHCCCEEEEEccHH-----HHHHHHhcCCceeecCcccccchhhhhhhh
Confidence 4467899999996543332 345567777777789999988631 34556666666666653
Q ss_pred --------------C--------CH------HHHHHHHHhCCCeEEEcCCCcCCCCc-hhhhhc-CCCceEEeccccCCC
Q 002431 599 --------------M--------SS------DMIAKLINEDKIQILINLNGYTKGAR-NEIFAM-QPAPIQVSYMGFPGT 648 (922)
Q Consensus 599 --------------~--------~~------~~~~~~i~~~~~dil~~~~~~~~~~~-~~~~~~-~~apvq~~~~g~~~t 648 (922)
+ .. ..+.+.|++.++||+|--. ..- ..++++ ...|+.++..+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~----~~~~~~~aa~~~giP~v~~~~~~~~~ 164 (412)
T 3otg_A 89 FDTDSPEGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEI----SNYGAGLAALKAGIPTICHGVGRDTP 164 (412)
T ss_dssp HSCSCCTTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEET----TCHHHHHHHHHHTCCEEEECCSCCCC
T ss_pred hcccCCccCChhHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECc----hhhHHHHHHHHcCCCEEEecccccCc
Confidence 0 01 5677888899999985321 111 122222 336887765454321
Q ss_pred CCC-Cc----cc---------------EEEecCccCCcCc-cCCCccceeecCCccccCCCccccccCCCCCCCCCcCCC
Q 002431 649 TGA-SY----ID---------------YLVTDEFVSPLRY-AHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDY 707 (922)
Q Consensus 649 ~g~-~~----~d---------------~~~~d~~~~~~~~-~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~ 707 (922)
.+. +. +. +..+|.++.+... ...+.+++ +....... +.+.. ....+.++
T Consensus 165 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~---~~~~~~~~------~~~~~-~~~~~~~~ 234 (412)
T 3otg_A 165 DDLTRSIEEEVRGLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQEPEFRA---RPRRHELR------PVPFA-EQGDLPAW 234 (412)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCCCSSCCGGGGCCEEECSCGGGSCHHHHT---CTTEEECC------CCCCC-CCCCCCGG
T ss_pred hhhhHHHHHHHHHHHHHcCCCCCcccccCCCCeEEeeCCHHhcCCcccC---CCCcceee------ccCCC-CCCCCCCc
Confidence 110 00 00 0112222222111 11111100 00000000 00101 11122233
Q ss_pred --C-CCCCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHH
Q 002431 708 --G-LPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHI 784 (922)
Q Consensus 708 --~-l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~ 784 (922)
. .+++.+++.++++..+....++....+.+++.+...+++.|.++. .+.++ ++ .++|.|.|+++ ..
T Consensus 235 ~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~-~~~l~------~~-~~~v~~~~~~~---~~ 303 (412)
T 3otg_A 235 LSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLD-VSGLG------EV-PANVRLESWVP---QA 303 (412)
T ss_dssp GGGSCTTSCEEEEECTTTTCSCHHHHHHHHHHHHTSSSEEEEECCSSCC-CTTCC------CC-CTTEEEESCCC---HH
T ss_pred cccccCCCCEEEEEcCCCCcCcHHHHHHHHHHHHcCCCEEEEEECCCCC-hhhhc------cC-CCcEEEeCCCC---HH
Confidence 2 244557788888776555566655555666665444444444431 22222 35 58999999985 55
Q ss_pred HhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHH
Q 002431 785 RRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQ 861 (922)
Q Consensus 785 ~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~ 861 (922)
.++..+|+|+.+ +|++|++|||++|+|+|+.+...- ....+..+...|..- ++.. |++++.+++.+|++|++
T Consensus 304 ~~l~~ad~~v~~---~g~~t~~Ea~a~G~P~v~~p~~~~-q~~~~~~v~~~g~g~-~~~~~~~~~~~l~~ai~~ll~~~~ 378 (412)
T 3otg_A 304 ALLPHVDLVVHH---GGSGTTLGALGAGVPQLSFPWAGD-SFANAQAVAQAGAGD-HLLPDNISPDSVSGAAKRLLAEES 378 (412)
T ss_dssp HHGGGCSEEEES---CCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHHTSEE-ECCGGGCCHHHHHHHHHHHHHCHH
T ss_pred HHHhcCcEEEEC---CchHHHHHHHHhCCCEEecCCchh-HHHHHHHHHHcCCEE-ecCcccCCHHHHHHHHHHHHhCHH
Confidence 567789999943 456999999999999998765421 122234555657655 5543 88999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 862 KLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
.++++++..++... .++.+++++.+++.+.+
T Consensus 379 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 379 YRAGARAVAAEIAA---MPGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHHHHHHHHHHHHH---SCCHHHHHTTHHHHHC-
T ss_pred HHHHHHHHHHHHhc---CCCHHHHHHHHHHHhcc
Confidence 99999888877653 37899999999988743
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-12 Score=116.72 Aligned_cols=110 Identities=19% Similarity=0.222 Sum_probs=67.2
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Q 002431 339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 418 (922)
Q Consensus 339 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 418 (922)
..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHhcC------CCCHHHHHHHHH
Q 002431 419 SGHVEAAIKSYKQALLLR------PDFPEATCNLLH 448 (922)
Q Consensus 419 ~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~ 448 (922)
.|++++|+..|+++++++ |++..+...+..
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 666666666666666666 555555554443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-12 Score=127.53 Aligned_cols=131 Identities=19% Similarity=0.155 Sum_probs=109.9
Q ss_pred HHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 002431 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385 (922)
Q Consensus 306 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 385 (922)
.++.+|..+...|++++|+..|++++ +.++.++..+|.++...|++++|+..|+++++.+|.++.+++.+|.++...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 35566777777777777777777764 235677888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhCCCcH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 386 GRVTDAIQDYIRAITIRPTMA----------------EAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 386 g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
|++++|+..|+++++..|++. .+++.+|.+|...|++++|+..|+++++.+|++
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 888888888888888777655 899999999999999999999999999999986
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=126.19 Aligned_cols=129 Identities=14% Similarity=0.131 Sum_probs=112.6
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH-HHHhCCH--HH
Q 002431 314 YMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT-YKEIGRV--TD 390 (922)
Q Consensus 314 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~--~~ 390 (922)
+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34567888888888888888888888899999999999999999999999999999999999999999 7889998 99
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 391 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
|+..++++++.+|++..++..+|.+|...|++++|+..|+++++.+|+++..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 9999999999999999999999999999999999999999999999987543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.7e-12 Score=126.78 Aligned_cols=129 Identities=16% Similarity=0.158 Sum_probs=80.8
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
+.+|..++..|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 455666666666666666666664 22 455666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhcCCCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002431 83 IDLAIRYYLVAIELRPNFA----------------DAWSNLASAYMRKGRLNEAAQCCRQALALNPLL 134 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 134 (922)
+++|+..|+++++..|++. .++..+|.++...|++++|+..++++++.+|++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 6666666666666555443 566666666666666666666666666666544
|
| >3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.7e-13 Score=143.71 Aligned_cols=335 Identities=12% Similarity=0.105 Sum_probs=191.1
Q ss_pred cceeeeecCCCCCChhHhhhhHHhhcCCCC--CeEEEEEecCCCCChHHHHHHHhccC-ceEECC----CCC--------
Q 002431 536 RLRVGYVSSDFGNHPLSHLMGSVFGMHNKE--NVEVFCYALSPNDGTEWRQRTQSEAE-HFVDVS----AMS-------- 600 (922)
Q Consensus 536 ~~rig~~s~~~~~h~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~-------- 600 (922)
++||.+|.+. -|-...+.++++.+.+. .+|+++..+++..+ -..+.+....- .-+++. +.+
T Consensus 27 ~~kI~~v~Gt---r~~~~~~a~li~~l~~~~~~~~~~~~~tG~h~~-m~~~~~~~~~i~~~~~l~v~~~~~~~~~~~~~~ 102 (403)
T 3ot5_A 27 KIKVMSIFGT---RPEAIKMAPLVLALEKEPETFESTVVITAQHRE-MLDQVLEIFDIKPDIDLDIMKKGQTLAEITSRV 102 (403)
T ss_dssp CEEEEEEECS---HHHHHHHHHHHHHHHTCTTTEEEEEEECC------CHHHHHHTTCCCSEECCCCC-CCCHHHHHHHH
T ss_pred cceEEEEEec---ChhHHHHHHHHHHHHhCCCCCcEEEEEecCcHH-HHHHHHHhcCCCCCcccccCCCCCCHHHHHHHH
Confidence 4789999852 34444567777777654 69999888876521 11222332221 112322 112
Q ss_pred HHHHHHHHHhCCCeEEEcCCCcCCCCchhhh-----h-cCCCceEEeccccCCCCC----CCc--cc---EEEecCccCC
Q 002431 601 SDMIAKLINEDKIQILINLNGYTKGARNEIF-----A-MQPAPIQVSYMGFPGTTG----ASY--ID---YLVTDEFVSP 665 (922)
Q Consensus 601 ~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~-----~-~~~apvq~~~~g~~~t~g----~~~--~d---~~~~d~~~~~ 665 (922)
...+.+.+++.++|++ |.+|.+...+ + .+-.||....-|- .|.+ .+. +- ..++|.+++|
T Consensus 103 ~~~l~~~l~~~kPD~V-----i~~gd~~~~l~~~laA~~~~IPv~h~~agl-rs~~~~~~~p~~~~r~~~~~~a~~~~~~ 176 (403)
T 3ot5_A 103 MNGINEVIAAENPDIV-----LVHGDTTTSFAAGLATFYQQKMLGHVEAGL-RTWNKYSPFPEEMNRQLTGVMADIHFSP 176 (403)
T ss_dssp HHHHHHHHHHHCCSEE-----EEETTCHHHHHHHHHHHHTTCEEEEESCCC-CCSCTTSSTTHHHHHHHHHHHCSEEEES
T ss_pred HHHHHHHHHHcCCCEE-----EEECCchhHHHHHHHHHHhCCCEEEEECCc-cccccccCCcHHHHHHHHHHhcCEEECC
Confidence 2457888899999999 5555432222 2 2335764322121 1111 111 00 1134556666
Q ss_pred cCccC-------CCccceeecCCccccCCCccccccCCCC-CCCCCcCCCCCCCCcEEEEecCCC---CCCCHHHHHHHH
Q 002431 666 LRYAH-------IYSEKLVHVPHCYFVNDYKQKNMDVLDP-NCQPKRSDYGLPEDKFIFACFNQL---YKMDPEIFNTWC 734 (922)
Q Consensus 666 ~~~~~-------~~~e~~~~lp~~~~~~~~~~~~~~~~~~-~~~~~r~~~~l~~~~~~~~~~~~~---~K~~~~~~~~~~ 734 (922)
.+... .-.+++..+++..+... ...... .....++++ +++.+++.+.+|. .|..+.+++++.
T Consensus 177 se~~~~~l~~~Gi~~~~i~vvGn~~~D~~-----~~~~~~~~~~~~~~~l--~~~~~vlv~~~r~~~~~~~l~~ll~a~~ 249 (403)
T 3ot5_A 177 TKQAKENLLAEGKDPATIFVTGNTAIDAL-----KTTVQKDYHHPILENL--GDNRLILMTAHRRENLGEPMQGMFEAVR 249 (403)
T ss_dssp SHHHHHHHHHTTCCGGGEEECCCHHHHHH-----HHHSCTTCCCHHHHSC--TTCEEEEECCCCHHHHTTHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCcccEEEeCCchHHHH-----HhhhhhhcchHHHHhc--cCCCEEEEEeCcccccCcHHHHHHHHHH
Confidence 54311 11234544444322100 000110 112334445 5555677777764 366789999999
Q ss_pred HHHhhCCCeEEEEe-cCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCC
Q 002431 735 NILRRVPNSALWLL-RFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGL 813 (922)
Q Consensus 735 ~il~~~p~~~l~~~-~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~ 813 (922)
++.++.|+.++++. |.++..++.+++. .+. .++|.|.|.+++.++..+|+.+|+++-+| ||.+ +||+++|+
T Consensus 250 ~l~~~~~~~~~v~~~~~~~~~~~~l~~~---~~~-~~~v~l~~~l~~~~~~~l~~~ad~vv~~S---Gg~~-~EA~a~g~ 321 (403)
T 3ot5_A 250 EIVESREDTELVYPMHLNPAVREKAMAI---LGG-HERIHLIEPLDAIDFHNFLRKSYLVFTDS---GGVQ-EEAPGMGV 321 (403)
T ss_dssp HHHHHCTTEEEEEECCSCHHHHHHHHHH---HTT-CTTEEEECCCCHHHHHHHHHHEEEEEECC---HHHH-HHGGGTTC
T ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHH---hCC-CCCEEEeCCCCHHHHHHHHHhcCEEEECC---ccHH-HHHHHhCC
Confidence 99999999988876 4444323344332 354 37899999998889999999999998665 5555 99999999
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
|||+.+..+ +|.- .+ ..|-.- ++..|.+++++.+.++..|++.++++++..+ .|.....++++.+..
T Consensus 322 PvV~~~~~~--~~~e--~v-~~g~~~-lv~~d~~~l~~ai~~ll~~~~~~~~m~~~~~-------~~g~~~aa~rI~~~l 388 (403)
T 3ot5_A 322 PVLVLRDTT--ERPE--GI-EAGTLK-LIGTNKENLIKEALDLLDNKESHDKMAQAAN-------PYGDGFAANRILAAI 388 (403)
T ss_dssp CEEECCSSC--SCHH--HH-HHTSEE-ECCSCHHHHHHHHHHHHHCHHHHHHHHHSCC-------TTCCSCHHHHHHHHH
T ss_pred CEEEecCCC--cchh--he-eCCcEE-EcCCCHHHHHHHHHHHHcCHHHHHHHHhhcC-------cccCCcHHHHHHHHH
Confidence 999874221 1111 12 235322 4546999999999999999998888765322 233334445555554
Q ss_pred HHHHHHHhcCCCCCccee
Q 002431 894 FKMWSLHCSGQKPQHFKV 911 (922)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~ 911 (922)
.+.+. .+.+|..|.|
T Consensus 389 ~~~l~---~~~~~~~~~~ 403 (403)
T 3ot5_A 389 KSHFE---ETDRPEDFIV 403 (403)
T ss_dssp HHHHT---CCCCCCCCCC
T ss_pred HHHhC---CCCCCccccC
Confidence 44443 2556777764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-12 Score=120.11 Aligned_cols=132 Identities=18% Similarity=0.219 Sum_probs=74.3
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (922)
+..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHH--hhcccCChhhHhHHHHHHHHHHHH
Q 002431 421 HVEAAIKSYKQALLLRPDFPEATCNLLH--TLQCVCSWEDRDRMFSEVEGIIRR 472 (922)
Q Consensus 421 ~~~~A~~~~~~al~~~p~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~ 472 (922)
++++|+..|+++++.+|++..++..+.. .+...|+++++...+.+...++..
T Consensus 96 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 96 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 5556666665555555555555533222 244445555555555555555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-11 Score=117.84 Aligned_cols=131 Identities=21% Similarity=0.242 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
+..+..+|.+++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHh
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHSNL--GNLMKAQGLVQEAYSCYLEALR 163 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~ 163 (922)
..|++++|+..++++++.+|.+..++..+ +..+...|++++|+..+.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 77777777777777777777776666333 3336666667777666665543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.39 E-value=6.9e-12 Score=131.81 Aligned_cols=161 Identities=14% Similarity=0.080 Sum_probs=119.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChH------HHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCc------hhhh
Q 002431 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ------ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS------APFN 342 (922)
Q Consensus 275 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~ 342 (922)
..+..+...|++++|...++++++..+..+. .+..+|.++...+++++|+..|++++...+... .++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3455666677777777777777766555443 233466666667777777777777776543322 2577
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHcc-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------cHHHH
Q 002431 343 NLAVIYKQQGNYADAISCYNEVLRI-------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT------MAEAH 409 (922)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~ 409 (922)
.+|.+|...|++++|+.+|+++++. .+....+++++|.+|..+|++++|+..+++++++.+. ...++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888888888888888888888842 1223458889999999999999999999999987533 27889
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhc
Q 002431 410 ANLASAYKDSGH-VEAAIKSYKQALLL 435 (922)
Q Consensus 410 ~~la~~~~~~g~-~~~A~~~~~~al~~ 435 (922)
+.+|.+|.++|+ +++|++.|++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999994 69999999999875
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-11 Score=128.34 Aligned_cols=169 Identities=9% Similarity=0.042 Sum_probs=120.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 002431 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA------DAWSNLASAYMRKGRLNEAAQCCRQALALNPLL--- 134 (922)
Q Consensus 64 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--- 134 (922)
|.....+...+..+...|++++|++.+.++++..+... ..+..+|.++...|++++|+..++++++..+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 33445566677777777888888888777777665533 235567777777778888888888887654332
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---
Q 002431 135 ---VDAHSNLGNLMKAQGLVQEAYSCYLEAL---RIQPTF----AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT--- 201 (922)
Q Consensus 135 ---~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--- 201 (922)
..++..+|.++...|++++|+..|++++ +..|++ ..++.++|.+|...|++++|+.+++++++..++
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 4577778888888888888888888877 334442 257778888888888888888888888765422
Q ss_pred ---CHHHHHHHHHHHHHcCChHHH-HHHHHHHHhh
Q 002431 202 ---FPDAYLNLGNVYKALGMPQEA-IMCYQRAVQT 232 (922)
Q Consensus 202 ---~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 232 (922)
...++..+|.++...|++++| ...+++++..
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 156778888888888888888 6778877764
|
| >3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.8e-13 Score=146.06 Aligned_cols=305 Identities=12% Similarity=0.085 Sum_probs=180.2
Q ss_pred ccceeeeecCCCCCChhHhhhhHHhhcCCCC-CeEEEEEecCCCCChHHHHHHHhccC-ceEECCCC----C--------
Q 002431 535 RRLRVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEWRQRTQSEAE-HFVDVSAM----S-------- 600 (922)
Q Consensus 535 ~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~-------- 600 (922)
+.+||.+|.+. -|-...+.++++.+.+. .+|+.+..+++..+ -..+.+..... .-+++.-+ +
T Consensus 24 ~m~ki~~v~Gt---r~~~~~~a~li~~l~~~~~~~~~~~~tG~h~~-~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~ 99 (396)
T 3dzc_A 24 AMKKVLIVFGT---RPEAIKMAPLVQQLCQDNRFVAKVCVTGQHRE-MLDQVLELFSITPDFDLNIMEPGQTLNGVTSKI 99 (396)
T ss_dssp CCEEEEEEECS---HHHHHHHHHHHHHHHHCTTEEEEEEECCSSSH-HHHHHHHHTTCCCSEECCCCCTTCCHHHHHHHH
T ss_pred CCCeEEEEEec---cHhHHHHHHHHHHHHhCCCCcEEEEEecccHH-HHHHHHHhcCCCCceeeecCCCCCCHHHHHHHH
Confidence 45789998853 34444567777776543 69998888887642 12232332221 11233211 2
Q ss_pred HHHHHHHHHhCCCeEEEcCCCcCCCCchh-----hhh-cCCCceEEeccccCCCCC-----CCc-c----cEEEecCccC
Q 002431 601 SDMIAKLINEDKIQILINLNGYTKGARNE-----IFA-MQPAPIQVSYMGFPGTTG-----ASY-I----DYLVTDEFVS 664 (922)
Q Consensus 601 ~~~~~~~i~~~~~dil~~~~~~~~~~~~~-----~~~-~~~apvq~~~~g~~~t~g-----~~~-~----d~~~~d~~~~ 664 (922)
...+.+.+++.+||++ |.+|.+.. +.+ ..-.||....-|- .++ .+. + -..++|.+++
T Consensus 100 ~~~l~~~l~~~kPDvV-----i~~g~~~~~~~~~~aa~~~~IPv~h~~ag~--rs~~~~~~~~~~~~r~~~~~~a~~~~~ 172 (396)
T 3dzc_A 100 LLGMQQVLSSEQPDVV-----LVHGDTATTFAASLAAYYQQIPVGHVEAGL--RTGNIYSPWPEEGNRKLTAALTQYHFA 172 (396)
T ss_dssp HHHHHHHHHHHCCSEE-----EEETTSHHHHHHHHHHHTTTCCEEEETCCC--CCSCTTSSTTHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhcCCCEE-----EEECCchhHHHHHHHHHHhCCCEEEEECCc--cccccccCCcHHHHHHHHHHhcCEEEC
Confidence 2457888999999999 45544332 222 2335765432221 111 111 0 0124566666
Q ss_pred CcCccC-C------CccceeecCCccccCCCccccccCCCC--C----CCCCcCCCC-CC-CCcEEEEecCCC---CCCC
Q 002431 665 PLRYAH-I------YSEKLVHVPHCYFVNDYKQKNMDVLDP--N----CQPKRSDYG-LP-EDKFIFACFNQL---YKMD 726 (922)
Q Consensus 665 ~~~~~~-~------~~e~~~~lp~~~~~~~~~~~~~~~~~~--~----~~~~r~~~~-l~-~~~~~~~~~~~~---~K~~ 726 (922)
|.+... . -.+++..+++..+.. .....+. . ...+|+++| |+ ++.+++.+.+|. .|..
T Consensus 173 ~se~~~~~l~~~G~~~~ki~vvGn~~~d~-----~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~ 247 (396)
T 3dzc_A 173 PTDTSRANLLQENYNAENIFVTGNTVIDA-----LLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFGGGF 247 (396)
T ss_dssp SSHHHHHHHHHTTCCGGGEEECCCHHHHH-----HHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTTHH
T ss_pred CCHHHHHHHHHcCCCcCcEEEECCcHHHH-----HHHhhhhcccchhhHHHHHHHhCccCCCCCEEEEEECCcccchhHH
Confidence 655311 1 123444444322110 0000000 0 023577899 44 455566666543 3777
Q ss_pred HHHHHHHHHHHhhCCCeEEEEe-cCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHH
Q 002431 727 PEIFNTWCNILRRVPNSALWLL-RFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTG 805 (922)
Q Consensus 727 ~~~~~~~~~il~~~p~~~l~~~-~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~ 805 (922)
+.+++++.++.++.|+.++++. |.++..++.+++. .+. .++|.|.+.+++.++..+|+.+|++|-+| ||++
T Consensus 248 ~~ll~A~~~l~~~~~~~~~v~~~g~~~~~~~~l~~~---~~~-~~~v~~~~~lg~~~~~~l~~~ad~vv~~S---Gg~~- 319 (396)
T 3dzc_A 248 ERICQALITTAEQHPECQILYPVHLNPNVREPVNKL---LKG-VSNIVLIEPQQYLPFVYLMDRAHIILTDS---GGIQ- 319 (396)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHH---TTT-CTTEEEECCCCHHHHHHHHHHCSEEEESC---SGGG-
T ss_pred HHHHHHHHHHHHhCCCceEEEEeCCChHHHHHHHHH---HcC-CCCEEEeCCCCHHHHHHHHHhcCEEEECC---ccHH-
Confidence 8999999999988999988875 5444324444433 344 47899999988889999999999999776 5544
Q ss_pred HHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 002431 806 TDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNK 869 (922)
Q Consensus 806 ~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~ 869 (922)
+||+++|+|||+....+- +. .++ ..|-.- ++..|.+++++.+.+|..|++.+++|++.
T Consensus 320 ~EA~a~G~PvV~~~~~~~--~~--e~v-~~G~~~-lv~~d~~~l~~ai~~ll~d~~~~~~m~~~ 377 (396)
T 3dzc_A 320 EEAPSLGKPVLVMRETTE--RP--EAV-AAGTVK-LVGTNQQQICDALSLLLTDPQAYQAMSQA 377 (396)
T ss_dssp TTGGGGTCCEEECCSSCS--CH--HHH-HHTSEE-ECTTCHHHHHHHHHHHHHCHHHHHHHHTS
T ss_pred HHHHHcCCCEEEccCCCc--ch--HHH-HcCceE-EcCCCHHHHHHHHHHHHcCHHHHHHHhhc
Confidence 999999999998642211 11 112 225433 55568999999999999999988877764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.3e-12 Score=115.25 Aligned_cols=117 Identities=16% Similarity=0.240 Sum_probs=64.9
Q ss_pred hHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 002431 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYK 383 (922)
Q Consensus 304 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 383 (922)
...+..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..++++++.+|.+..++..+|.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 002431 384 EIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (922)
Q Consensus 384 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (922)
..|++++|+..|+++++.+|++..++..++.++...|
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555555444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-12 Score=121.07 Aligned_cols=113 Identities=21% Similarity=0.221 Sum_probs=104.5
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 002431 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414 (922)
Q Consensus 335 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 414 (922)
+.+...+..+|.++...|++++|+..|+++++++|.++.+++.+|.++...|++++|+..|+++++++|++..+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002431 415 AYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL 447 (922)
Q Consensus 415 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 447 (922)
+|..+|++++|+..|+++++++|+++.++....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999999988665543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=6e-12 Score=114.28 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=71.3
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS 109 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 109 (922)
|.+..+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|++..++..+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666666666666666666666666655555666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002431 110 AYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG 149 (922)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 149 (922)
++...|++++|+..++++++.+|.+..++..++.++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 6666666666666666665555555555555555555443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=8e-13 Score=129.96 Aligned_cols=143 Identities=17% Similarity=0.079 Sum_probs=65.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH----------------HHHHHHHH
Q 002431 46 LHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA----------------DAWSNLAS 109 (922)
Q Consensus 46 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~ 109 (922)
.|++++|.+.++......+..+..+..+|..+...|++++|+..|+++++..|.++ .++..+|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 33344443333333333333344444444444444444444444444444444333 44445555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH
Q 002431 110 AYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRA 188 (922)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 188 (922)
++...|++++|+..++++++.+|.+..+++.+|.++...|++++|+..|+++++.+|++..++..++.++...++..++
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555554444444444333
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=7.2e-12 Score=113.23 Aligned_cols=122 Identities=20% Similarity=0.231 Sum_probs=80.4
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS 109 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 109 (922)
|.+...+..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++.+|++..++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002431 110 AYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLV 151 (922)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 151 (922)
++...|++++|+..++++++.+|++..++..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 666666666666666666666666666666666666655543
|
| >3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-11 Score=136.16 Aligned_cols=165 Identities=13% Similarity=0.169 Sum_probs=119.5
Q ss_pred CCCcEEEEecCCC--CCCC-HHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHh
Q 002431 710 PEDKFIFACFNQL--YKMD-PEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRR 786 (922)
Q Consensus 710 ~~~~~~~~~~~~~--~K~~-~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~ 786 (922)
++..+++.++++. .|.. ..+++.+.+. +..|+.+++++++++. .+.+. ++ +++|.|.|+++..+.+
T Consensus 216 ~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~~-~~~l~------~~-~~~v~~~~~~~~~~ll-- 284 (391)
T 3tsa_A 216 TSARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPEH-RALLT------DL-PDNARIAESVPLNLFL-- 284 (391)
T ss_dssp CSSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGGG-GGGCT------TC-CTTEEECCSCCGGGTG--
T ss_pred CCCCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCcc-hhhcc------cC-CCCEEEeccCCHHHHH--
Confidence 3445778788876 3455 8888888888 8898999988876643 33332 45 5889999998765544
Q ss_pred ccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC-----CHHHHHHHHHHHhcCHH
Q 002431 787 SSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN-----SMKEYEERAVSLALDRQ 861 (922)
Q Consensus 787 ~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~-----~~~~~~~~~~~l~~d~~ 861 (922)
..+|+|+. .+|++|++|||++|+|+|+.+-.. ....-+..+...|... ++.. |++++.+++.++++|++
T Consensus 285 -~~ad~~v~---~~G~~t~~Ea~~~G~P~v~~p~~~-~q~~~a~~~~~~g~g~-~~~~~~~~~~~~~l~~ai~~ll~~~~ 358 (391)
T 3tsa_A 285 -RTCELVIC---AGGSGTAFTATRLGIPQLVLPQYF-DQFDYARNLAAAGAGI-CLPDEQAQSDHEQFTDSIATVLGDTG 358 (391)
T ss_dssp -GGCSEEEE---CCCHHHHHHHHHTTCCEEECCCST-THHHHHHHHHHTTSEE-ECCSHHHHTCHHHHHHHHHHHHTCTH
T ss_pred -hhCCEEEe---CCCHHHHHHHHHhCCCEEecCCcc-cHHHHHHHHHHcCCEE-ecCcccccCCHHHHHHHHHHHHcCHH
Confidence 88999992 355679999999999999975422 1222345566667765 5543 78999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 862 KLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
.++++++..++.. .....++.++.+|+...
T Consensus 359 ~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 359 FAAAAIKLSDEIT---AMPHPAALVRTLENTAA 388 (391)
T ss_dssp HHHHHHHHHHHHH---TSCCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH---cCCCHHHHHHHHHHHHh
Confidence 9999887776653 23678888888877543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.37 E-value=6e-12 Score=119.33 Aligned_cols=114 Identities=19% Similarity=0.217 Sum_probs=81.7
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS 109 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 109 (922)
+.+...++.+|.+++..|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..|+++++.+|++..+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002431 110 AYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGN 143 (922)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 143 (922)
++...|++++|+..|+++++.+|++..++...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 7777777777777777777777766665544443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-12 Score=114.59 Aligned_cols=102 Identities=17% Similarity=0.245 Sum_probs=89.4
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc-------HHHHH
Q 002431 338 SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM-------AEAHA 410 (922)
Q Consensus 338 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 410 (922)
+.++..+|..+.+.|++++|+..|+++++++|+++.++.++|.+|..+|++++|+..++++++++|++ ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34577889999999999999999999999999999999999999999999999999999999887654 35788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 411 NLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 411 ~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
.+|.++..+|++++|++.|+++++..|++
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 89999999999999999999999988863
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-11 Score=129.82 Aligned_cols=165 Identities=13% Similarity=0.025 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------H
Q 002431 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAE------CYGNMANAWKEKGDIDLAIRYYLVAIELRPNF------A 101 (922)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 101 (922)
..+...+..++..|++++|+..++++++..+..+. .+..+|..+...|++++|+.+|+++++..+.. .
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 34444455555566666666666665554443322 22235555555556666666666665532221 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------c
Q 002431 102 DAWSNLASAYMRKGRLNEAAQCCRQALAL---N----PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT------F 168 (922)
Q Consensus 102 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~ 168 (922)
.++..+|.+|...|++++|+.+|+++++. . +....++..+|.++..+|++++|+..++++++..+. .
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 24556666666666666666666666532 1 112235566666666666666666666666654321 2
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Q 002431 169 AIAWSNLAGLFMESGD-LNRALQYYKEAVKL 198 (922)
Q Consensus 169 ~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~ 198 (922)
..++..+|.++...|+ +++|++.+++++.+
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 4566666666666663 46666666666553
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.9e-12 Score=113.28 Aligned_cols=102 Identities=22% Similarity=0.214 Sum_probs=88.6
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 419 (922)
.++.+|..+.+.|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHH
Q 002431 420 GHVEAAIKSYKQALLLRPDFPE 441 (922)
Q Consensus 420 g~~~~A~~~~~~al~~~p~~~~ 441 (922)
|++++|+..|+++++.+|++..
T Consensus 99 g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred CCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999988653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.6e-12 Score=115.92 Aligned_cols=103 Identities=12% Similarity=0.078 Sum_probs=87.7
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCC-------CHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHhh------
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPL-------AAD-----GLVNRGNTYKEIGRVTDAIQDYIRAITI------ 401 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~al~~------ 401 (922)
.+...|..+.+.|++++|+..|+++++++|+ +.. +|.++|.++.++|++++|+..|++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3556666777777777777777777777766 433 9999999999999999999999999999
Q ss_pred -CCCcHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 402 -RPTMAEAH----ANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 402 -~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
+|++..+| +++|.++..+|++++|+..|++++++.|++..+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999 999999999999999999999999999987644
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-11 Score=111.25 Aligned_cols=122 Identities=26% Similarity=0.308 Sum_probs=87.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002431 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGN 143 (922)
Q Consensus 64 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 143 (922)
|.+...+..+|..+...|++++|+..|+++++..|++..++..+|.++...|++++|+..++++++.+|++..++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 34556677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q 002431 144 LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 185 (922)
Q Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 185 (922)
++...|++++|+..++++++..|++..++..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 777777777777777777777777777777777766666653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.8e-11 Score=106.67 Aligned_cols=116 Identities=42% Similarity=0.684 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
..+++.+|.++...|++++|++.++++++..|.+..++..+|.++...|++++|+..|+++++..|.+..++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 55666666677777777777777777766666666666666666666677777777776666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 148 (922)
..|++++|...++++++.+|.+..++..++.++...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 666666666666666666666666666666665543
|
| >3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.8e-12 Score=135.72 Aligned_cols=181 Identities=8% Similarity=-0.005 Sum_probs=133.4
Q ss_pred CCCcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCC---eEEEEecC-----ChhhHHHHH----HHHHHc-
Q 002431 701 QPKRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN---SALWLLRF-----PAAGEMRLR----AYAVAQ- 765 (922)
Q Consensus 701 ~~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~---~~l~~~~~-----~~~~~~~l~----~~~~~~- 765 (922)
..+|+++| +..++.+++|+. |+.+.++++| +++++.|+ .+|+++|. ++. .+.++ +.+.+.
T Consensus 272 ~~lr~~~~---~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~-y~~l~~~l~~lv~~in 346 (496)
T 3t5t_A 272 EGIEEWAD---GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPA-NADYVHRVETAVAEAN 346 (496)
T ss_dssp TTHHHHHT---TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC---CceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCCCCchH-HHHHHHHHHHHHHHhc
Confidence 34666666 456777778774 9999999999 99999996 45777763 222 23444 433332
Q ss_pred ---CCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcC---CCeeeecCCcchhhhHHHHHHhcCCC
Q 002431 766 ---GVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAG---LPMITLPLEKMATRVAGSLCLATGLG 838 (922)
Q Consensus 766 ---g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g---~Pvv~~~~~~~~~r~~~~~~~~~g~~ 838 (922)
|.. +|+|+|.++..+..++|+.+||||.|+.++| |++++|||+|| .|+|+......+. .+ |-.
T Consensus 347 ~~~g~~--~V~f~g~v~~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~~-----~l---~~~ 416 (496)
T 3t5t_A 347 AELGSD--TVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCGAAE-----VL---GEY 416 (496)
T ss_dssp HHHCTT--SEEEEECCCHHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTHH-----HH---GGG
T ss_pred cccCCc--CEEEeCCCCHHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCCCHH-----Hh---CCC
Confidence 442 8999999999999999999999999999999 99999999996 6777433221121 12 112
Q ss_pred Ccccc-CCHHHHHHHHHHHhcC-HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 002431 839 EEMIV-NSMKEYEERAVSLALD-RQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899 (922)
Q Consensus 839 ~~~i~-~~~~~~~~~~~~l~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 899 (922)
..+|. .|++++++++.+++++ ++.+++..+++++.+.. +|...+++.+.+..+....+
T Consensus 417 allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~V~~---~d~~~W~~~fl~~L~~~~~~ 476 (496)
T 3t5t_A 417 CRSVNPFDLVEQAEAISAALAAGPRQRAEAAARRRDAARP---WTLEAWVQAQLDGLAADHAA 476 (496)
T ss_dssp SEEECTTBHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTT---CBHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHhhcccc
Confidence 21332 5899999999998875 56777778888888754 99999999999988887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3.4e-11 Score=107.63 Aligned_cols=107 Identities=39% Similarity=0.608 Sum_probs=45.5
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (922)
+..+|.++...|++++|++.++++++..|.+..++..+|.++...|++++|+..++++++..|++..++..++.++...|
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 91 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG 91 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 33334444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002431 421 HVEAAIKSYKQALLLRPDFPEATCNLL 447 (922)
Q Consensus 421 ~~~~A~~~~~~al~~~p~~~~~~~~l~ 447 (922)
++++|...|+++++.+|+++.++..+.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~~~~~l~ 118 (125)
T 1na0_A 92 DYDEAIEYYQKALELDPNNAEAKQNLG 118 (125)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 444444444444444444444443333
|
| >4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.7e-12 Score=139.57 Aligned_cols=326 Identities=11% Similarity=0.010 Sum_probs=166.7
Q ss_pred CcccceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCC-C-----------
Q 002431 533 GLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM-S----------- 600 (922)
Q Consensus 533 ~~~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------- 600 (922)
...+|||.+++.....| -.-+.++.+.+.+.+.||.+++.. ...+.+...+..++.+..- +
T Consensus 12 ~~~~MrIl~~~~~~~gh--~~~~~~La~~L~~~GheV~v~~~~-----~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 84 (398)
T 4fzr_A 12 RGSHMRILVIAGCSEGF--VMPLVPLSWALRAAGHEVLVAASE-----NMGPTVTGAGLPFAPTCPSLDMPEVLSWDREG 84 (398)
T ss_dssp ---CCEEEEECCSSHHH--HGGGHHHHHHHHHTTCEEEEEEEG-----GGHHHHHHTTCCEEEEESSCCHHHHHSBCTTS
T ss_pred CCCceEEEEEcCCCcch--HHHHHHHHHHHHHCCCEEEEEcCH-----HHHHHHHhCCCeeEecCCccchHhhhhhhccC
Confidence 45679999998654333 234567778887778999998853 1345566665555555420 0
Q ss_pred ---------------------------HHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhc-CCCceEEeccccCCCCCC-
Q 002431 601 ---------------------------SDMIAKLINEDKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPGTTGA- 651 (922)
Q Consensus 601 ---------------------------~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~-~~apvq~~~~g~~~t~g~- 651 (922)
...+.+.+++.++|++|- ++.+....+++. ...|+..+.+|.....+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~---d~~~~~~~~~a~~~giP~v~~~~~~~~~~~~~ 161 (398)
T 4fzr_A 85 NRTTMPREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLT---ETYSLTGPLVAATLGIPWIEQSIRLASPELIK 161 (398)
T ss_dssp CBCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEE---ETTCTHHHHHHHHHTCCEEEECCSSCCCHHHH
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE---CccccHHHHHHHhhCCCEEEeccCCCCchhhh
Confidence 125777888899998862 222222233332 346887766554322110
Q ss_pred ----CcccEEEecCccCCcCccCCCccceeecCCccccCC--CccccccCCCC-CCCCCcCCCCC-CCCcEEEEecCCCC
Q 002431 652 ----SYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVND--YKQKNMDVLDP-NCQPKRSDYGL-PEDKFIFACFNQLY 723 (922)
Q Consensus 652 ----~~~d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~--~~~~~~~~~~~-~~~~~r~~~~l-~~~~~~~~~~~~~~ 723 (922)
..+...+. .+..+.... ....+...|..+.... ......+.+.. .....+..+.. ++..+|+.++++..
T Consensus 162 ~~~~~~l~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~G~~~ 238 (398)
T 4fzr_A 162 SAGVGELAPELA-ELGLTDFPD--PLLSIDVCPPSMEAQPKPGTTKMRYVPYNGRNDQVPSWVFEERKQPRLCLTFGTRV 238 (398)
T ss_dssp HHHHHHTHHHHH-TTTCSSCCC--CSEEEECSCGGGC----CCCEECCCCCCCCSSCCCCHHHHSCCSSCEEECC-----
T ss_pred HHHHHHHHHHHH-HcCCCCCCC--CCeEEEeCChhhCCCCCCCCCCeeeeCCCCCCCCCchhhhcCCCCCEEEEEccCcc
Confidence 00000010 111110000 0001111221111100 00000011100 11111111111 34456777777653
Q ss_pred --CC------CHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEec
Q 002431 724 --KM------DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLD 795 (922)
Q Consensus 724 --K~------~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~ 795 (922)
|+ ....++...+.++.. +.+++++++++. .+.+. ++ +++|.|.|+++..+ ++..+|+|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~al~~~-~~~~v~~~~~~~-~~~l~------~~-~~~v~~~~~~~~~~---ll~~ad~~v- 305 (398)
T 4fzr_A 239 PLPNTNTIPGGLSLLQALSQELPKL-GFEVVVAVSDKL-AQTLQ------PL-PEGVLAAGQFPLSA---IMPACDVVV- 305 (398)
T ss_dssp -----------CCSHHHHHHHGGGG-TCEEEECCCC---------------C-CTTEEEESCCCHHH---HGGGCSEEE-
T ss_pred cccccccccchHHHHHHHHHHHHhC-CCEEEEEeCCcc-hhhhc------cC-CCcEEEeCcCCHHH---HHhhCCEEE-
Confidence 32 222333333334444 467777766543 33333 35 58999999986444 456699999
Q ss_pred CCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002431 796 TPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALTNKLKS 872 (922)
Q Consensus 796 ~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~~~~~~~~~~~~ 872 (922)
..+|++|++|||++|+|+|+.+...- ...-+..+...|..- ++.. |++++.+++.++++|++.++++++..++
T Consensus 306 --~~gG~~t~~Ea~~~G~P~v~~p~~~~-q~~~a~~~~~~g~g~-~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~ 381 (398)
T 4fzr_A 306 --HHGGHGTTLTCLSEGVPQVSVPVIAE-VWDSARLLHAAGAGV-EVPWEQAGVESVLAACARIRDDSSYVGNARRLAAE 381 (398)
T ss_dssp --ECCCHHHHHHHHHTTCCEEECCCSGG-GHHHHHHHHHTTSEE-ECC-------CHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred --ecCCHHHHHHHHHhCCCEEecCCchh-HHHHHHHHHHcCCEE-ecCcccCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 34567999999999999999865321 222335566667755 5432 6788999999999999999999888877
Q ss_pred hcccCCCCChHHHHHHHHH
Q 002431 873 VRLTCPLFDTARWVKNLER 891 (922)
Q Consensus 873 ~~~~~~~~~~~~~~~~~e~ 891 (922)
.. ...++++.++.+|+
T Consensus 382 ~~---~~~~~~~~~~~l~~ 397 (398)
T 4fzr_A 382 MA---TLPTPADIVRLIEQ 397 (398)
T ss_dssp HT---TSCCHHHHHHHHTC
T ss_pred HH---cCCCHHHHHHHHhc
Confidence 54 33788888887764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=9.6e-12 Score=113.77 Aligned_cols=106 Identities=20% Similarity=0.281 Sum_probs=90.5
Q ss_pred cCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 002431 333 VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412 (922)
Q Consensus 333 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 412 (922)
..+.++..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34566777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 413 ASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 413 a~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
|.++...|++++|+..|+++++++|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888888877
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.32 E-value=9.7e-13 Score=147.27 Aligned_cols=143 Identities=14% Similarity=0.174 Sum_probs=96.7
Q ss_pred CChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC---------------HHHHHHHHHHH
Q 002431 318 NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---------------ADGLVNRGNTY 382 (922)
Q Consensus 318 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~ 382 (922)
+++++|+..|++++...|.....+..+|..+.+.|++++|+..|+++++++|.+ ..+++++|.++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555666666666666666666666666666666655 56777777777
Q ss_pred HHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHh
Q 002431 383 KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRD 460 (922)
Q Consensus 383 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 460 (922)
.++|++++|+..|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++.++..++...++++++.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777776666555444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-12 Score=146.45 Aligned_cols=142 Identities=13% Similarity=0.082 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHH
Q 002431 14 SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---------------AECYGNMANAWK 78 (922)
Q Consensus 14 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~ 78 (922)
++++|+..++..+...|.....+..+|.+++..|+|++|+..|+++++.+|.+ ..+++.+|.+|.
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555556666666667777777777777777777776666665 344455555555
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002431 79 EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAY 155 (922)
Q Consensus 79 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 155 (922)
+.|++++|+..|+++++++|++..+++.+|.+|...|++++|+..|+++++++|++..++..++.++...+++++|.
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555544445555555544444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=9.8e-12 Score=110.67 Aligned_cols=102 Identities=21% Similarity=0.128 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002431 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113 (922)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 113 (922)
..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH
Q 002431 114 KGRLNEAAQCCRQALALNPLLV 135 (922)
Q Consensus 114 ~g~~~~A~~~~~~~l~~~p~~~ 135 (922)
.|++++|+..++++++.+|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888877654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-11 Score=105.54 Aligned_cols=111 Identities=22% Similarity=0.347 Sum_probs=91.2
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 002431 338 SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417 (922)
Q Consensus 338 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 417 (922)
...+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++..++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34567778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002431 418 DSGHVEAAIKSYKQALLLRPDFPEATCNLLH 448 (922)
Q Consensus 418 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 448 (922)
..|++++|...|+++++.+|+++.++..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 8888888888888888888888777766544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-11 Score=110.82 Aligned_cols=105 Identities=19% Similarity=0.133 Sum_probs=75.8
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002431 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLA 108 (922)
Q Consensus 29 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 108 (922)
+|.++..++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Q 002431 109 SAYMRKGRLNEAAQCCRQALALNPL 133 (922)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~l~~~p~ 133 (922)
.++...|++++|+..|+++++.+|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 7777777777777777777766655
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-11 Score=109.44 Aligned_cols=100 Identities=21% Similarity=0.282 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------HHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF-------ADAWS 105 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 105 (922)
+.++..+|..+++.|+|++|+..|+++++.+|+++.++..+|.+|...|++++|++.|+++++++|++ ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666655443 23455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002431 106 NLASAYMRKGRLNEAAQCCRQALALNP 132 (922)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~~l~~~p 132 (922)
.+|.++...|++++|++.|++++...|
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 555555566666666666666655554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-11 Score=106.22 Aligned_cols=107 Identities=18% Similarity=0.238 Sum_probs=98.8
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--cHHHHHH
Q 002431 334 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT--MAEAHAN 411 (922)
Q Consensus 334 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 411 (922)
+|++...+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57778889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhcCCCCH
Q 002431 412 LASAYKDS-GHVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 412 la~~~~~~-g~~~~A~~~~~~al~~~p~~~ 440 (922)
+|.++... |++++|+++++++++..|+++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999988764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=8.9e-11 Score=103.67 Aligned_cols=112 Identities=22% Similarity=0.303 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
+..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++..++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNL 144 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 144 (922)
..|++++|...++++++.+|++..++..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666555555555444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-11 Score=117.45 Aligned_cols=103 Identities=19% Similarity=0.167 Sum_probs=85.9
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHcc------------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRI------------------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 401 (922)
.+...|..+.+.|++++|+..|+++++. +|.+..++.++|.++..+|++++|+..+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3555666666777777777777777666 5666788999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 402 RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 402 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
+|+++.+++.+|.+|..+|++++|+..|+++++++|+++..
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 133 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASV 133 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHH
Confidence 99999999999999999999999999999999999988733
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.29 E-value=9e-11 Score=105.89 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=68.4
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRT---DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMAN 75 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 75 (922)
++.+|..++..|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 45566666666666666666666666666655 566666666666666666666666666666666 556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 76 AWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS 109 (922)
Q Consensus 76 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 109 (922)
++...|++++|+..|+++++..|++..+......
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 6666666666666666666666665554444333
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.1e-11 Score=117.96 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=105.7
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCC
Q 002431 9 MYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL------EPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 9 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 82 (922)
++..|++++|.+.++.+....+....++..+|.++...|++++|+..++++++. .+....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 456788888888655554433356778888888888888888888888888873 33456677888888888888
Q ss_pred HHHHHHHHHHHHhc---CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcC
Q 002431 83 IDLAIRYYLVAIEL---RPN----FADAWSNLASAYMRKGRLNEAAQCCRQALALNP--LL----VDAHSNLGNLMKAQG 149 (922)
Q Consensus 83 ~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~----~~~~~~la~~~~~~g 149 (922)
+++|+..++++++. .++ ...++..+|.++...|++++|+..+++++...+ .+ ..++..+|.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888888776 332 244677778888888888888888877775421 11 123456666666666
Q ss_pred CHHHHHHHHHHHHhh
Q 002431 150 LVQEAYSCYLEALRI 164 (922)
Q Consensus 150 ~~~~A~~~~~~al~~ 164 (922)
++++|...++++++.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666666553
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=8e-11 Score=109.05 Aligned_cols=117 Identities=16% Similarity=0.145 Sum_probs=91.1
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHH
Q 002431 334 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 410 (922)
Q Consensus 334 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 410 (922)
.+.+...+..+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|++..+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 34556667777777778888888888888888877776 777888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhh
Q 002431 411 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450 (922)
Q Consensus 411 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 450 (922)
.+|.++...|++++|+..|+++++++|+++.++..+....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 8888888888888888888888888888777766655443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-12 Score=145.48 Aligned_cols=137 Identities=15% Similarity=0.309 Sum_probs=110.6
Q ss_pred hHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 002431 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYK 383 (922)
Q Consensus 304 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 383 (922)
+..+..+|..+.+.|++++|+..|+++++.+|++..++..+|.+|.++|++++|++.++++++++|.++.+++.+|.++.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34556667777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHhcCCCCH
Q 002431 384 EIGRVTDAIQDYIRAITIRPTMAEAHANLASA--YKDSGHVEAAIKSYK-----------QALLLRPDFP 440 (922)
Q Consensus 384 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~~ 440 (922)
.+|++++|++.|+++++.+|++..++..++.+ +.+.|++++|++.++ ++++..|++.
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 88999999999999988888888888888887 788888889998888 7777776653
|
| >3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-10 Score=128.56 Aligned_cols=168 Identities=14% Similarity=0.157 Sum_probs=119.1
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccC
Q 002431 710 PEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 789 (922)
Q Consensus 710 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~ 789 (922)
++..+|+.++++..+....++....+.++..|-..++++|.+.. .+.+. .+ +++|.|.|+++.. .++..
T Consensus 229 ~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~------~~-~~~v~~~~~~~~~---~ll~~ 297 (402)
T 3ia7_A 229 PDAPVLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGFLD-PAVLG------PL-PPNVEAHQWIPFH---SVLAH 297 (402)
T ss_dssp TTCCEEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTTSC-GGGGC------SC-CTTEEEESCCCHH---HHHTT
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCcCC-hhhhC------CC-CCcEEEecCCCHH---HHHhh
Confidence 44567888898887777777777666677777444445565433 22222 24 5899999998866 45677
Q ss_pred CcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHH
Q 002431 790 ADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQAL 866 (922)
Q Consensus 790 ~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~~~~~~ 866 (922)
+|+++. .+|+.|++|||++|+|+|+.+.........+..+...|..- .+.. +.+++.+.+.+|++|++.++++
T Consensus 298 ad~~v~---~~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~-~~~~~~~~~~~l~~~~~~ll~~~~~~~~~ 373 (402)
T 3ia7_A 298 ARACLT---HGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGS-VLRPDQLEPASIREAVERLAADSAVRERV 373 (402)
T ss_dssp EEEEEE---CCCHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEE-ECCGGGCSHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCEEEE---CCCHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEE-EccCCCCCHHHHHHHHHHHHcCHHHHHHH
Confidence 999983 34568889999999999987652222334456677778765 5543 7899999999999999998888
Q ss_pred HHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 867 TNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
++..++.. .....++.++.+++.+..
T Consensus 374 ~~~~~~~~---~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 374 RRMQRDIL---SSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHHHHHHH---TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh---hCChHHHHHHHHHHHHhh
Confidence 77666543 236788888888887753
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-11 Score=109.92 Aligned_cols=102 Identities=18% Similarity=0.098 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------cH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR-------FA-----ECYGNMANAWKEKGDIDLAIRYYLVAIEL---- 96 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 96 (922)
...+...|..++..|+|++|+..|+++++.+|+ +. .+|..+|.++...|++++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 455677777778888888888888888877777 22 26666666666666666666666666666
Q ss_pred ---CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002431 97 ---RPNFADAW----SNLASAYMRKGRLNEAAQCCRQALALNPLL 134 (922)
Q Consensus 97 ---~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 134 (922)
+|++..+| +.+|.++..+|++++|+..|+++++++|++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 66665555 666666666666666666666665555543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.3e-11 Score=117.84 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=97.4
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhc------CCCCchhhhhHHHHHHHcCCHH
Q 002431 282 DVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV------TTGLSAPFNNLAVIYKQQGNYA 355 (922)
Q Consensus 282 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~ 355 (922)
..|++++|.+.++......+....++..+|.++...|++++|...+++++.. .+....++..+|.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3445555555333322211233445555555555555555555555555542 2233455667777777777777
Q ss_pred HHHHHHHHHHcc---CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC--Cc----HHHHHHHHHHHHhcCCH
Q 002431 356 DAISCYNEVLRI---DPLA----ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP--TM----AEAHANLASAYKDSGHV 422 (922)
Q Consensus 356 ~A~~~~~~al~~---~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~ 422 (922)
+|+..++++++. .+++ ..++..+|.++...|++++|+..++++++..+ .+ ..++..+|.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777777766 3322 34677888888888888888888888876531 11 34567888999999999
Q ss_pred HHHHHHHHHHHhcC
Q 002431 423 EAAIKSYKQALLLR 436 (922)
Q Consensus 423 ~~A~~~~~~al~~~ 436 (922)
++|.+.+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998888763
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-11 Score=114.77 Aligned_cols=88 Identities=15% Similarity=0.179 Sum_probs=76.6
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH-HHHHHH
Q 002431 334 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA-EAHANL 412 (922)
Q Consensus 334 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l 412 (922)
.|.+..++.++|.+|...|++++|+..++++++++|.++.+++.+|.++..+|++++|+..|+++++++|++. .+...+
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5666778899999999999999999999999999999999999999999999999999999999999999988 667777
Q ss_pred HHHHHhcCC
Q 002431 413 ASAYKDSGH 421 (922)
Q Consensus 413 a~~~~~~g~ 421 (922)
..+..+.++
T Consensus 139 ~~~~~~~~~ 147 (162)
T 3rkv_A 139 KIVTERRAE 147 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776655443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-10 Score=107.81 Aligned_cols=117 Identities=23% Similarity=0.163 Sum_probs=86.6
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002431 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS 105 (922)
Q Consensus 29 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 105 (922)
+|.+...++.+|..++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|++..++.
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 35567777777777777777777777777777777776 677777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002431 106 NLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145 (922)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 145 (922)
.+|.++...|++++|+..|+++++.+|++..++..++.+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7777777777777777777777777777777666665554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-10 Score=104.43 Aligned_cols=113 Identities=16% Similarity=0.069 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHH
Q 002431 35 NLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA---ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAWSNLA 108 (922)
Q Consensus 35 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la 108 (922)
+++.+|.+++..|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 466777888888888888888888888777776 677788888888888888888888888887777 77778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002431 109 SAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA 147 (922)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 147 (922)
.++...|++++|+..|+++++..|++..+......+...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 888888888888888888887777777665555444433
|
| >3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=9.2e-11 Score=130.07 Aligned_cols=134 Identities=13% Similarity=0.016 Sum_probs=91.7
Q ss_pred HHHHHHcCCCCCc------eEEcC-CCCcH------HHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcch
Q 002431 759 RAYAVAQGVQPDQ------IIFTD-VAMKQ------EHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMA 824 (922)
Q Consensus 759 ~~~~~~~g~~~~r------v~f~~-~~~~~------~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~ 824 (922)
...+++.|+. ++ |+|.| +.+.. ++..+|+.+|+||.||.|+| |+|.+|||+||+||||.....+.
T Consensus 476 l~~~r~l~L~-N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~~ 554 (725)
T 3nb0_A 476 LNKIRQVQLF-NSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFG 554 (725)
T ss_dssp HHHHHHHTCC-CCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHHH
T ss_pred HHHHHhcCCC-CCcCCceeEEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCChh
Confidence 3344566763 33 67776 55543 57888999999999999999 99999999999999976654332
Q ss_pred hhhHHHHHHhcC-----CCCcccc----CCHHHHHHHHHH----Hh-cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 002431 825 TRVAGSLCLATG-----LGEEMIV----NSMKEYEERAVS----LA-LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 890 (922)
Q Consensus 825 ~r~~~~~~~~~g-----~~~~~i~----~~~~~~~~~~~~----l~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 890 (922)
.-|. ...+ -.+.+|. .++++.++.+.+ +. .|+..+..++++.++.. ..|+++.++++++
T Consensus 555 d~V~----dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A---~~FSWe~iA~~Yl 627 (725)
T 3nb0_A 555 SYME----DLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS---DLLDWKRMGLEYV 627 (725)
T ss_dssp HHHH----TTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGG---GGGBHHHHHHHHH
T ss_pred hhhh----ccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH---HhCCHHHHHHHHH
Confidence 2111 0000 1221342 255555544443 33 37888899998887654 3599999999999
Q ss_pred HHHHHHHHHH
Q 002431 891 RSYFKMWSLH 900 (922)
Q Consensus 891 ~~y~~~~~~~ 900 (922)
++|+.++.+.
T Consensus 628 ~~Ye~aL~~~ 637 (725)
T 3nb0_A 628 KARQLALRRG 637 (725)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999998643
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=137.80 Aligned_cols=124 Identities=17% Similarity=0.243 Sum_probs=88.8
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
++.+|..+++.|+|++|++.|+++++.+|.+..++..+|.++..+|++++|++.++++++.+|+++.+++.+|.+|...|
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34556667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASA--YMRKGRLNEAAQCCR 125 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~ 125 (922)
++++|++.|+++++.+|++..++..++.+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777777777777777777666 666777777777777
|
| >3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.2e-10 Score=124.73 Aligned_cols=166 Identities=14% Similarity=0.132 Sum_probs=116.8
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEE-ecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc
Q 002431 710 PEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWL-LRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (922)
Q Consensus 710 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~-~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~ 788 (922)
++..+|+.++++..+....++....+.++..| .++++ +|.++. .+.+. .+ +++|.|.|+++..++ +.
T Consensus 245 ~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~-~~~v~~~g~~~~-~~~l~------~~-~~~v~~~~~~~~~~l---l~ 312 (415)
T 3rsc_A 245 DDLPVVLVSLGTTFNDRPGFFRDCARAFDGQP-WHVVMTLGGQVD-PAALG------DL-PPNVEAHRWVPHVKV---LE 312 (415)
T ss_dssp SCCCEEEEECTTTSCCCHHHHHHHHHHHTTSS-CEEEEECTTTSC-GGGGC------CC-CTTEEEESCCCHHHH---HH
T ss_pred CCCCEEEEECCCCCCChHHHHHHHHHHHhcCC-cEEEEEeCCCCC-hHHhc------CC-CCcEEEEecCCHHHH---Hh
Confidence 44567888999887777777777777777777 55554 565433 22221 35 579999999887644 45
Q ss_pred CCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHH
Q 002431 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQA 865 (922)
Q Consensus 789 ~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~~~~~ 865 (922)
.+|+++. .+|..|++|||++|+|+|+.+-.. .....+..+...|... .+.. +.+++.+.+.++++|++.++.
T Consensus 313 ~ad~~v~---~~G~~t~~Ea~~~G~P~v~~p~~~-~q~~~a~~l~~~g~g~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 387 (415)
T 3rsc_A 313 QATVCVT---HGGMGTLMEALYWGRPLVVVPQSF-DVQPMARRVDQLGLGA-VLPGEKADGDTLLAAVGAVAADPALLAR 387 (415)
T ss_dssp HEEEEEE---SCCHHHHHHHHHTTCCEEECCCSG-GGHHHHHHHHHHTCEE-ECCGGGCCHHHHHHHHHHHHTCHHHHHH
T ss_pred hCCEEEE---CCcHHHHHHHHHhCCCEEEeCCcc-hHHHHHHHHHHcCCEE-EcccCCCCHHHHHHHHHHHHcCHHHHHH
Confidence 5999984 355688999999999999876422 2223345666667765 4543 789999999999999999888
Q ss_pred HHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 866 LTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
+++..++... ....++.++.+++.+..
T Consensus 388 ~~~~~~~~~~---~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 388 VEAMRGHVRR---AGGAARAADAVEAYLAR 414 (415)
T ss_dssp HHHHHHHHHH---SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---cCHHHHHHHHHHHHhhc
Confidence 8776655432 36778888888877643
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-11 Score=132.62 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=94.6
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHH
Q 002431 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAV 346 (922)
Q Consensus 267 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 346 (922)
+.....+..+|..+...|++++|+..|+++++..|++.. +...+++.++...+. ..+++++|.
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~ 238 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHH
Confidence 344667888888888888888888888888888876541 222333444433332 237889999
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-hcCCHHHH
Q 002431 347 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK-DSGHVEAA 425 (922)
Q Consensus 347 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A 425 (922)
+|.++|++++|+..|+++++++|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998844 56778889
Q ss_pred HHHHHHHHhcCCCCHH
Q 002431 426 IKSYKQALLLRPDFPE 441 (922)
Q Consensus 426 ~~~~~~al~~~p~~~~ 441 (922)
...|++++...|+++.
T Consensus 319 ~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 319 KEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ----------------
T ss_pred HHHHHHhhCCCCCCCC
Confidence 9999999999988754
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-11 Score=109.51 Aligned_cols=96 Identities=22% Similarity=0.288 Sum_probs=77.0
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Q 002431 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV----------TDAIQDYIRAITIRPTMAEAHANLASAYKDS 419 (922)
Q Consensus 350 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 419 (922)
+.+.+++|++.++++++++|+++++++++|.++..++++ ++|+..|+++++++|++..+++++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 455677777777777777777777777777777777654 5888888888888888888888888888877
Q ss_pred C-----------CHHHHHHHHHHHHhcCCCCHHHHHH
Q 002431 420 G-----------HVEAAIKSYKQALLLRPDFPEATCN 445 (922)
Q Consensus 420 g-----------~~~~A~~~~~~al~~~p~~~~~~~~ 445 (922)
| ++++|+++|+++++++|++.....+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4 8999999999999999998655443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.21 E-value=9.7e-11 Score=102.36 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=78.3
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHHH
Q 002431 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN--FADAWSN 106 (922)
Q Consensus 29 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 106 (922)
+|++..+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 46666777777777777777777777777777777777777777777777777777777777777777777 7777777
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 002431 107 LASAYMRK-GRLNEAAQCCRQALALNPLL 134 (922)
Q Consensus 107 la~~~~~~-g~~~~A~~~~~~~l~~~p~~ 134 (922)
++.++... |++++|++.+++++...|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 77777777 77777777777777766653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.19 E-value=8.8e-10 Score=123.01 Aligned_cols=196 Identities=16% Similarity=0.099 Sum_probs=138.9
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCch-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRT-----------------DNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 64 (922)
.+..|..+.+.|+|++|++.|.++++..|... .++..+|.+|...|++++|++.+.++++..+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999998877542 3577788888888888888888888776544
Q ss_pred Cc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 002431 65 RF------AECYGNMANAWKEKGDIDLAIRYYLVAIELR------PNFADAWSNLASAYMRKGRLNEAAQCCRQALAL-- 130 (922)
Q Consensus 65 ~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-- 130 (922)
.. ..+...++.++...|++++|+.++++++... +....++..+|.++...|++++|...+++++..
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 32 2344556667777788888888887777642 223567777788888888888888888777654
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 131 ----NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ---PTF----AIAWSNLAGLFMESGDLNRALQYYKEAVK 197 (922)
Q Consensus 131 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (922)
.+....++..++.++...|++++|...+++++... +.. ...+..++.++...+++++|...|.++++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22344567777777777777777777777776642 111 23455666666677777777777776655
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-10 Score=103.56 Aligned_cols=113 Identities=22% Similarity=0.287 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------HHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF-------ADAWS 105 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 105 (922)
+..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|+++++..|++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45566666666666777777777777666666666666666666666667777776666666665544 56666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002431 106 NLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146 (922)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 146 (922)
.+|.++...|++++|+..|+++++..| +......++.+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 666666666666666666666666665 4555555554443
|
| >2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.3e-09 Score=119.33 Aligned_cols=171 Identities=15% Similarity=0.172 Sum_probs=116.4
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEE-EEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc
Q 002431 710 PEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSAL-WLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (922)
Q Consensus 710 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l-~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~ 788 (922)
+++.+++.++++..+.....+....+.++..|+.++ +++|.++. .+.++ .+ +++|.|.|+++.. .+|.
T Consensus 230 ~~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~-~~~l~------~~-~~~v~~~~~~~~~---~~l~ 298 (430)
T 2iyf_A 230 GAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVT-PAELG------EL-PDNVEVHDWVPQL---AILR 298 (430)
T ss_dssp TCSEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC---C-GGGGC------SC-CTTEEEESSCCHH---HHHT
T ss_pred CCCCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCCCC-hHHhc------cC-CCCeEEEecCCHH---HHhh
Confidence 345678889998775566666666666666566776 56777653 22221 35 4799999998865 4578
Q ss_pred CCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc-C--CHHHHHHHHHHHhcCHHHHHH
Q 002431 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-N--SMKEYEERAVSLALDRQKLQA 865 (922)
Q Consensus 789 ~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~-~--~~~~~~~~~~~l~~d~~~~~~ 865 (922)
.+|+|+. .+|++|++|||++|+|+|+.+-... ....+..+...|..- ++. . |.+++.+++.+++.|++.+++
T Consensus 299 ~ad~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~~-q~~~a~~~~~~g~g~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 373 (430)
T 2iyf_A 299 QADLFVT---HAGAGGSQEGLATATPMIAVPQAVD-QFGNADMLQGLGVAR-KLATEEATADLLRETALALVDDPEVARR 373 (430)
T ss_dssp TCSEEEE---CCCHHHHHHHHHTTCCEEECCCSHH-HHHHHHHHHHTTSEE-ECCCC-CCHHHHHHHHHHHHHCHHHHHH
T ss_pred ccCEEEE---CCCccHHHHHHHhCCCEEECCCccc-hHHHHHHHHHcCCEE-EcCCCCCCHHHHHHHHHHHHcCHHHHHH
Confidence 8999985 3567899999999999998865321 111234455566644 443 2 789999999999999999888
Q ss_pred HHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 002431 866 LTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899 (922)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 899 (922)
+++..++.... ++.+..++.+++.+++...+
T Consensus 374 ~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~ 404 (430)
T 2iyf_A 374 LRRIQAEMAQE---GGTRRAADLIEAELPARHER 404 (430)
T ss_dssp HHHHHHHHHHH---CHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHhc---CcHHHHHHHHHHHhhccccc
Confidence 88877665432 67888999998888766543
|
| >3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-10 Score=123.23 Aligned_cols=321 Identities=13% Similarity=0.032 Sum_probs=170.1
Q ss_pred CcccceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCC-------------
Q 002431 533 GLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM------------- 599 (922)
Q Consensus 533 ~~~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 599 (922)
..+.|||.+++.....|- .-+.++.+.+-+.+.||.+++. . ..+.+...+..++.+..-
T Consensus 17 ~~~~MrIl~~~~~~~Ghv--~~~~~La~~L~~~GheV~v~~~-~-----~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 88 (398)
T 3oti_A 17 EGRHMRVLFVSSPGIGHL--FPLIQLAWGFRTAGHDVLIAVA-E-----HADRAAAAGLEVVDVAPDYSAVKVFEQVAKD 88 (398)
T ss_dssp --CCCEEEEECCSSHHHH--GGGHHHHHHHHHTTCEEEEEES-S-----CHHHHHTTTCEEEESSTTCCHHHHHHHHHHH
T ss_pred hhhcCEEEEEcCCCcchH--hHHHHHHHHHHHCCCEEEEecc-c-----hHHHHHhCCCeeEecCCccCHHHHhhhcccC
Confidence 345689999997543332 3455777777777899999886 2 234455555556655421
Q ss_pred -----------------------------CHHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhc-CCCceEEeccccCCCC
Q 002431 600 -----------------------------SSDMIAKLINEDKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPGTT 649 (922)
Q Consensus 600 -----------------------------~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~-~~apvq~~~~g~~~t~ 649 (922)
....+.+.+++.++|++|- + +......+.+. ...|+..+.++.....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVv~-d--~~~~~~~~aA~~~giP~v~~~~~~~~~~ 165 (398)
T 3oti_A 89 NPRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVY-E--QGATVGLLAADRAGVPAVQRNQSAWRTR 165 (398)
T ss_dssp CHHHHHTGGGSCCCSGGGGHHHHHHHHGGGHHHHHHHHHHHCCSEEEE-E--TTCHHHHHHHHHHTCCEEEECCTTCCCT
T ss_pred CccccccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEE-C--chhhHHHHHHHHcCCCEEEEeccCCCcc
Confidence 1246788889999998863 1 11111123332 3468877766643221
Q ss_pred CC-----CcccEEEecCccCCcCccCCCccceeecCCccccCC-Cccc-cccCCCCCCCCCcCCCC-CCCCcEEEEecCC
Q 002431 650 GA-----SYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVND-YKQK-NMDVLDPNCQPKRSDYG-LPEDKFIFACFNQ 721 (922)
Q Consensus 650 g~-----~~~d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~-~~~~-~~~~~~~~~~~~r~~~~-l~~~~~~~~~~~~ 721 (922)
.. ..++.++.. +..+.... .-.+...|....... .... ..+.+.......+..+. .++..+|+.++++
T Consensus 166 ~~~~~~~~~l~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~G~ 241 (398)
T 3oti_A 166 GMHRSIASFLTDLMDK-HQVSLPEP---VATIESFPPSLLLEAEPEGWFMRWVPYGGGAVLGDRLPPVPARPEVAITMGT 241 (398)
T ss_dssp THHHHHHTTCHHHHHH-TTCCCCCC---SEEECSSCGGGGTTSCCCSBCCCCCCCCCCEECCSSCCCCCSSCEEEECCTT
T ss_pred chhhHHHHHHHHHHHH-cCCCCCCC---CeEEEeCCHHHCCCCCCCCCCccccCCCCCcCCchhhhcCCCCCEEEEEcCC
Confidence 11 111111111 10000000 000111111111000 0000 00000000111222222 2344578888887
Q ss_pred CC---CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCC
Q 002431 722 LY---KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL 798 (922)
Q Consensus 722 ~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~ 798 (922)
.. |....+.++.. .+++. +.+++++++++. .+.+. ++ +++|.|.|+++..+++ ..+|+|+.
T Consensus 242 ~~~~~~~~~~~~~~~~-~l~~~-~~~~v~~~g~~~-~~~l~------~~-~~~v~~~~~~~~~~ll---~~ad~~v~--- 305 (398)
T 3oti_A 242 IELQAFGIGAVEPIIA-AAGEV-DADFVLALGDLD-ISPLG------TL-PRNVRAVGWTPLHTLL---RTCTAVVH--- 305 (398)
T ss_dssp THHHHHCGGGHHHHHH-HHHTS-SSEEEEECTTSC-CGGGC------SC-CTTEEEESSCCHHHHH---TTCSEEEE---
T ss_pred CccccCcHHHHHHHHH-HHHcC-CCEEEEEECCcC-hhhhc------cC-CCcEEEEccCCHHHHH---hhCCEEEE---
Confidence 73 34434433333 34444 477777766543 22221 45 5899999998655554 56999992
Q ss_pred CCChhHHHHHHHcCCCeeeecCCcchhhhHH--HHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002431 799 CNAHTTGTDILWAGLPMITLPLEKMATRVAG--SLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALTNKLKSV 873 (922)
Q Consensus 799 ~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~--~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~~~~~~~~~~~~~ 873 (922)
.+|++|++|||++|+|+|+.+-..-. ...+ ..+...|..- .+.. +.+.+. ++++|++.++++++..++.
T Consensus 306 ~~G~~t~~Eal~~G~P~v~~p~~~dq-~~~a~~~~~~~~g~g~-~~~~~~~~~~~l~----~ll~~~~~~~~~~~~~~~~ 379 (398)
T 3oti_A 306 HGGGGTVMTAIDAGIPQLLAPDPRDQ-FQHTAREAVSRRGIGL-VSTSDKVDADLLR----RLIGDESLRTAAREVREEM 379 (398)
T ss_dssp CCCHHHHHHHHHHTCCEEECCCTTCC-SSCTTHHHHHHHTSEE-ECCGGGCCHHHHH----HHHHCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCEEEcCCCchh-HHHHHHHHHHHCCCEE-eeCCCCCCHHHHH----HHHcCHHHHHHHHHHHHHH
Confidence 46678999999999999987542111 1112 3445556654 4432 344433 8888999999988877775
Q ss_pred cccCCCCChHHHHHHHHHHH
Q 002431 874 RLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 874 ~~~~~~~~~~~~~~~~e~~y 893 (922)
.. ...+++.++.+|+..
T Consensus 380 ~~---~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 380 VA---LPTPAETVRRIVERI 396 (398)
T ss_dssp HT---SCCHHHHHHHHHHHH
T ss_pred Hh---CCCHHHHHHHHHHHh
Confidence 42 378888888888764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-11 Score=130.42 Aligned_cols=156 Identities=16% Similarity=0.091 Sum_probs=82.7
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002431 31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110 (922)
Q Consensus 31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 110 (922)
.....+..+|..++..|++++|+..|+++++..|++.. +...|++.++...+. ..++..+|.+
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~ 239 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHH
Confidence 34567788888888888888888888888888876541 112233333333221 1367777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHcCCHHHHH
Q 002431 111 YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL-FMESGDLNRAL 189 (922)
Q Consensus 111 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~ 189 (922)
+.+.|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++++|++..++..++.+ ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777776 33445666777
Q ss_pred HHHHHHHhcCCCCH
Q 002431 190 QYYKEAVKLKPTFP 203 (922)
Q Consensus 190 ~~~~~~l~~~p~~~ 203 (922)
..|.+++...|.++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 77777777776654
|
| >4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii} | Back alignment and structure |
|---|
Probab=99.16 E-value=5e-12 Score=136.59 Aligned_cols=327 Identities=11% Similarity=0.033 Sum_probs=189.0
Q ss_pred cceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccC-----ceEECCCCC--------HH
Q 002431 536 RLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAE-----HFVDVSAMS--------SD 602 (922)
Q Consensus 536 ~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--------~~ 602 (922)
-++|.+|.+ .-|-.--+.++++.+++. ||..+..++..-+..+.+.+...+. ...+..+-+ ..
T Consensus 9 ~~~~~~v~G---tRpe~~k~~p~~~~l~~~-~~~~~~~tgqh~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 84 (385)
T 4hwg_A 9 MLKVMTIVG---TRPELIKLCCVISEFDKH-TKHILVHTGQNYAYELNQVFFDDMGIRKPDYFLEVAADNTAKSIGLVIE 84 (385)
T ss_dssp CCEEEEEEC---SHHHHHHHHHHHHHHHHH-SEEEEEECSCHHHHHHTHHHHC-CCCCCCSEECCCCCCCSHHHHHHHHH
T ss_pred hhheeEEEE---cCHhHHHHHHHHHHHHhc-CCEEEEEeCCCCChhHHHHHHhhCCCCCCceecCCCCCCHHHHHHHHHH
Confidence 467777764 456656777888887765 9999999887533234443333221 222222212 24
Q ss_pred HHHHHHHhCCCeEEEcCCCcCCCCchhhhh-cCCCceEEeccccCCCCC---CCc-cc----EEEecCccCCcCccC---
Q 002431 603 MIAKLINEDKIQILINLNGYTKGARNEIFA-MQPAPIQVSYMGFPGTTG---ASY-ID----YLVTDEFVSPLRYAH--- 670 (922)
Q Consensus 603 ~~~~~i~~~~~dil~~~~~~~~~~~~~~~~-~~~apvq~~~~g~~~t~g---~~~-~d----~~~~d~~~~~~~~~~--- 670 (922)
.+.+.+++.++|+++-..+.+.... .+.+ .+--||....-|. .++ +|. +- ..++|.+++|.+...
T Consensus 85 ~l~~~l~~~kPD~Vlv~gd~~~~~a-alaA~~~~IPv~h~eagl--rs~~~~~pee~nR~~~~~~a~~~~~~te~~~~~l 161 (385)
T 4hwg_A 85 KVDEVLEKEKPDAVLFYGDTNSCLS-AIAAKRRKIPIFHMEAGN--RCFDQRVPEEINRKIIDHISDVNITLTEHARRYL 161 (385)
T ss_dssp HHHHHHHHHCCSEEEEESCSGGGGG-HHHHHHTTCCEEEESCCC--CCSCTTSTHHHHHHHHHHHCSEEEESSHHHHHHH
T ss_pred HHHHHHHhcCCcEEEEECCchHHHH-HHHHHHhCCCEEEEeCCC--ccccccCcHHHHHHHHHhhhceeecCCHHHHHHH
Confidence 5788889999999954433221111 1222 2334764332221 121 111 00 124455666655311
Q ss_pred ----CCccceeecCCccccCCCccccccC-CCCCCCCCcCCCCCCCCcEEEEecCCCC-----CCCHHHHHHHHHHHhhC
Q 002431 671 ----IYSEKLVHVPHCYFVNDYKQKNMDV-LDPNCQPKRSDYGLPEDKFIFACFNQLY-----KMDPEIFNTWCNILRRV 740 (922)
Q Consensus 671 ----~~~e~~~~lp~~~~~~~~~~~~~~~-~~~~~~~~r~~~~l~~~~~~~~~~~~~~-----K~~~~~~~~~~~il~~~ 740 (922)
.-.+++....+..+... ... ........|+++|++++.+++++.+|.. |..+.+++++.++.++.
T Consensus 162 ~~~G~~~~~I~vtGnp~~D~~-----~~~~~~~~~~~~~~~lgl~~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~ 236 (385)
T 4hwg_A 162 IAEGLPAELTFKSGSHMPEVL-----DRFMPKILKSDILDKLSLTPKQYFLISSHREENVDVKNNLKELLNSLQMLIKEY 236 (385)
T ss_dssp HHTTCCGGGEEECCCSHHHHH-----HHHHHHHHHCCHHHHTTCCTTSEEEEEECCC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcCcEEEECCchHHHH-----HHhhhhcchhHHHHHcCCCcCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcC
Confidence 11234444433221100 000 0011234678899987777777777643 55678999999987765
Q ss_pred CCeEEEEecCChhhHHHHHHHHHHc-C-CC-CCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeee
Q 002431 741 PNSALWLLRFPAAGEMRLRAYAVAQ-G-VQ-PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMIT 817 (922)
Q Consensus 741 p~~~l~~~~~~~~~~~~l~~~~~~~-g-~~-~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~ 817 (922)
+..+++.. +|. +++.+++. | +. .++|.|.+..++.++..+++.+|+++..+ || .+.||+++|+|||+
T Consensus 237 -~~~vv~p~-~p~----~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~S---Gg-v~~EA~alG~Pvv~ 306 (385)
T 4hwg_A 237 -NFLIIFST-HPR----TKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDS---GT-ITEEASILNLPALN 306 (385)
T ss_dssp -CCEEEEEE-CHH----HHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECC---TT-HHHHHHHTTCCEEE
T ss_pred -CeEEEEEC-ChH----HHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECC---cc-HHHHHHHcCCCEEE
Confidence 66665543 332 45555555 5 32 36899999888889999999999999544 44 46999999999999
Q ss_pred ecCCc-chhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 818 LPLEK-MATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 818 ~~~~~-~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
.+..+ ....+. .|-.- ++..|.++.++.+.+|.+|++.++.+++...... ......++.++.++..+
T Consensus 307 ~~~~ter~e~v~------~G~~~-lv~~d~~~i~~ai~~ll~d~~~~~~m~~~~~~~~--g~g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 307 IREAHERPEGMD------AGTLI-MSGFKAERVLQAVKTITEEHDNNKRTQGLVPDYN--EAGLVSKKILRIVLSYV 374 (385)
T ss_dssp CSSSCSCTHHHH------HTCCE-ECCSSHHHHHHHHHHHHTTCBTTBCCSCCCHHHH--TCCCHHHHHHHHHHHHH
T ss_pred cCCCccchhhhh------cCceE-EcCCCHHHHHHHHHHHHhChHHHHHhhccCCCCC--CCChHHHHHHHHHHHHh
Confidence 86643 222221 25433 5556999999999999999887665544332210 11245566666666544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.2e-11 Score=105.96 Aligned_cols=93 Identities=15% Similarity=0.174 Sum_probs=69.6
Q ss_pred cCCHHHHHHHHHHHHcc---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 002431 351 QGNYADAISCYNEVLRI---DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 427 (922)
Q Consensus 351 ~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 427 (922)
+|++++|+..|+++++. +|.++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777777777777777 466677777888888888888888888888888888877888888888888888888888
Q ss_pred HHHHHHhcCCCCHHHH
Q 002431 428 SYKQALLLRPDFPEAT 443 (922)
Q Consensus 428 ~~~~al~~~p~~~~~~ 443 (922)
.|+++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 8888888877776654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=104.67 Aligned_cols=107 Identities=19% Similarity=0.242 Sum_probs=56.1
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc-------HHHHHHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM-------AEAHANL 412 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l 412 (922)
.+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|++ ..+++.+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555555555555554443 4555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002431 413 ASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL 447 (922)
Q Consensus 413 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 447 (922)
|.++...|++++|++.|+++++..| ++.....+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~ 119 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQ 119 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 5555555555555555555555555 344444333
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-10 Score=124.32 Aligned_cols=139 Identities=19% Similarity=0.221 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHH
Q 002431 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 350 (922)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 350 (922)
..+..+|..+...|++++|+..|+++++..+..+ +....++.....|.+..++.++|.+|.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555555555322110 0001122223455556666777777777
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 002431 351 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 427 (922)
Q Consensus 351 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 427 (922)
+|++++|+.+++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++.+++.+
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777766666665543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-09 Score=120.22 Aligned_cols=200 Identities=10% Similarity=0.034 Sum_probs=153.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF-----------------AECYGNMANAWKEKGDIDLAIRYYLVAIE 95 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 95 (922)
|.+....|..+...|+|++|++.|.++++..+.. ..++..+|.+|...|++++|.+++.++++
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4556777888999999999999999999987753 23578899999999999999999998887
Q ss_pred cCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 96 LRPNF------ADAWSNLASAYMRKGRLNEAAQCCRQALALN------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR 163 (922)
Q Consensus 96 ~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (922)
..+.. ..+...++.++...|++++|+.++++++... +....++..+|.++...|++++|...+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 64432 1244566777777888999999988887652 22356778888889999999999888888876
Q ss_pred h------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002431 164 I------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK---PTF----PDAYLNLGNVYKALGMPQEAIMCYQRAV 230 (922)
Q Consensus 164 ~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (922)
. .+....++..++.+|...|++++|...+++++... +.. ...+..+|.++...+++++|...|.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5 23446678888888888888888888888887653 222 2356677777888888888888888877
Q ss_pred hh
Q 002431 231 QT 232 (922)
Q Consensus 231 ~~ 232 (922)
+.
T Consensus 244 ~~ 245 (434)
T 4b4t_Q 244 ES 245 (434)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.7e-10 Score=122.05 Aligned_cols=122 Identities=18% Similarity=0.275 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALR----------------LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL 96 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 96 (922)
...+..+|..++..|++++|+..|+++++ .+|.+..++..+|.+|.+.|++++|+.+++++++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45577788888888888888888888887 33334444444444444444444444444444444
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002431 97 RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154 (922)
Q Consensus 97 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 154 (922)
+|+++.+++.+|.+|...|++++|+..|+++++++|++..++..++.++...++.+++
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444444444433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.5e-11 Score=104.33 Aligned_cols=93 Identities=15% Similarity=0.073 Sum_probs=64.7
Q ss_pred cCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 12 SGSYKQALEHSNSVYER---NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIR 88 (922)
Q Consensus 12 ~g~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 88 (922)
.|++++|+..|+++++. +|++..+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777777777777776 466677777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCCcHHHH
Q 002431 89 YYLVAIELRPNFADAW 104 (922)
Q Consensus 89 ~~~~al~~~p~~~~~~ 104 (922)
.|+++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 7777777777666544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-10 Score=104.76 Aligned_cols=93 Identities=26% Similarity=0.468 Sum_probs=72.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 9 MYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDY----------DMCIARNEEALRLEPRFAECYGNMANAWK 78 (922)
Q Consensus 9 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~ 78 (922)
.-+.+.|++|++.++++++.+|+++++++.+|.++...+++ ++|+..|+++++++|++..+|+.+|.+|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34567788889999998888898888888888888888765 47778888888888887777888887777
Q ss_pred HcC-----------CHHHHHHHHHHHHhcCCCcH
Q 002431 79 EKG-----------DIDLAIRYYLVAIELRPNFA 101 (922)
Q Consensus 79 ~~g-----------~~~~A~~~~~~al~~~p~~~ 101 (922)
..| ++++|+++|+++++++|++.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 764 66777777777777777654
|
| >3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-09 Score=115.40 Aligned_cols=175 Identities=11% Similarity=0.105 Sum_probs=109.8
Q ss_pred cCCCCCCCCcEEEEecC-CC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCc
Q 002431 704 RSDYGLPEDKFIFACFN-QL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK 780 (922)
Q Consensus 704 r~~~~l~~~~~~~~~~~-~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~ 780 (922)
+...+++++.+++..++ +. .+++..+.+++.++.....-..+++.|.+ ..+.+.+...+.++ ++.+.|+++
T Consensus 171 ~~~~~~~~~~~~ilv~gGs~g~~~~~~~~~~al~~l~~~~~~~vi~~~G~~--~~~~~~~~~~~~~~---~~~v~~f~~- 244 (365)
T 3s2u_A 171 HARAPLTGRRVNLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQAGRQ--HAEITAERYRTVAV---EADVAPFIS- 244 (365)
T ss_dssp TSSCCCTTSCCEEEECCTTTTCSHHHHHHHHHHHTSCTTTCCEEEEECCTT--THHHHHHHHHHTTC---CCEEESCCS-
T ss_pred hhhcccCCCCcEEEEECCcCCccccchhhHHHHHhcccccceEEEEecCcc--ccccccceeccccc---ccccccchh-
Confidence 44556665555444433 22 34555555555544333222233344433 25566777777766 466678754
Q ss_pred HHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcc---hhhhHHHHHHhcCCCCccccC---CHHHHHHHHH
Q 002431 781 QEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM---ATRVAGSLCLATGLGEEMIVN---SMKEYEERAV 854 (922)
Q Consensus 781 ~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~---~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~ 854 (922)
+...+|..+|+++. -.|++|+.|+|++|+|+|..+-+.. ....-+..+...|... ++.. |++++.+.+.
T Consensus 245 -dm~~~l~~aDlvI~---raG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~-~l~~~~~~~~~L~~~i~ 319 (365)
T 3s2u_A 245 -DMAAAYAWADLVIC---RAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGR-LLPQKSTGAAELAAQLS 319 (365)
T ss_dssp -CHHHHHHHCSEEEE---CCCHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEE-ECCTTTCCHHHHHHHHH
T ss_pred -hhhhhhccceEEEe---cCCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEE-EeecCCCCHHHHHHHHH
Confidence 44455788999994 3578999999999999987653321 2233356677778755 5542 5789999999
Q ss_pred HHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHH
Q 002431 855 SLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERS 892 (922)
Q Consensus 855 ~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 892 (922)
+|+.|++.+++|++++++.. .....++.++.++++
T Consensus 320 ~ll~d~~~~~~m~~~a~~~~---~~~aa~~ia~~i~~l 354 (365)
T 3s2u_A 320 EVLMHPETLRSMADQARSLA---KPEATRTVVDACLEV 354 (365)
T ss_dssp HHHHCTHHHHHHHHHHHHTC---CTTHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHH
Confidence 99999999999999998853 223455555555554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.9e-10 Score=105.31 Aligned_cols=98 Identities=22% Similarity=0.313 Sum_probs=66.9
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC------CcHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLA------ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP------TMAE 407 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~ 407 (922)
++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+..++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 45556666666666666666666666543221 44667777777777888888777777776531 1245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002431 408 AHANLASAYKDSGHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 408 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 437 (922)
++..++.++...|++++|.+.+++++++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888877644
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.7e-09 Score=100.19 Aligned_cols=130 Identities=23% Similarity=0.258 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------c
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF------AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN------F 100 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~ 100 (922)
..++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+.+++++++..+. .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4456667777777777777777777776654321 235666666666666666666666666654322 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPL------LVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162 (922)
Q Consensus 101 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (922)
..++..+|.++...|++++|+..++++++..+. ...++..+|.++...|++++|...+++++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 335555566666666666666666655543211 12233344444444444444444444443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.97 E-value=4.4e-08 Score=109.88 Aligned_cols=180 Identities=12% Similarity=0.034 Sum_probs=134.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHhHHHHHHHcCC---------hhHHHHHHHHHHhcC-CCCchhh
Q 002431 273 YNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTNLGNIYMEWNM---------LPAAASYYKATLAVT-TGLSAPF 341 (922)
Q Consensus 273 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~---------~~~A~~~~~~a~~~~-~~~~~~~ 341 (922)
+..+...+.+.|+.++|+++|+++.+.+ ..+..+|+.+..++...+. .++|.++|+++.... ..+..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4445566666677777777776666543 2345556666655554433 567788888777654 4467788
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHhc
Q 002431 342 NNLAVIYKQQGNYADAISCYNEVLRID-PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-PTMAEAHANLASAYKDS 419 (922)
Q Consensus 342 ~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 419 (922)
+.+...|.+.|+.++|.++|+++.+.. ..+..+|..+...|.+.|+.++|.++|+++.+.. ..+..+|..+..+|.+.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 888888999999999999998887763 3467788888899999999999999999988764 33577899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcc
Q 002431 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQC 452 (922)
Q Consensus 420 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 452 (922)
|+.++|.++++++.+..-.....+++.+....+
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 999999999999998877766677766655443
|
| >2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.3e-08 Score=105.82 Aligned_cols=159 Identities=12% Similarity=0.064 Sum_probs=101.9
Q ss_pred CCcEEEEecCCCCC---------CCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcH
Q 002431 711 EDKFIFACFNQLYK---------MDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQ 781 (922)
Q Consensus 711 ~~~~~~~~~~~~~K---------~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~ 781 (922)
+..+++.++++... ....+++++ ... +.++++++.++. .+.+. ++ +++|.| |+.|..
T Consensus 209 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al----~~~-~~~~~~~~g~~~-~~~l~------~~-~~~v~~-~~~~~~ 274 (384)
T 2p6p_A 209 TRQRVLVTSGSRVAKESYDRNFDFLRGLAKDL----VRW-DVELIVAAPDTV-AEALR------AE-VPQARV-GWTPLD 274 (384)
T ss_dssp SSCEEEEECSSSSSCCSSCCCCTTHHHHHHHH----HTT-TCEEEEECCHHH-HHHHH------HH-CTTSEE-ECCCHH
T ss_pred CCCEEEEECCCCCccccccccHHHHHHHHHHH----hcC-CcEEEEEeCCCC-HHhhC------CC-CCceEE-cCCCHH
Confidence 34567888887543 233344433 333 466666543322 33332 24 578999 998754
Q ss_pred HHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhc
Q 002431 782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLAL 858 (922)
Q Consensus 782 ~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~ 858 (922)
+ ++..+|+|+.. +|++|++|||++|+|+|+.+-..-. ..-+..+...|..- .+. .+.+++.+++.+++.
T Consensus 275 ~---~l~~~d~~v~~---~G~~t~~Ea~~~G~P~v~~p~~~dq-~~~a~~~~~~g~g~-~~~~~~~~~~~l~~~i~~ll~ 346 (384)
T 2p6p_A 275 V---VAPTCDLLVHH---AGGVSTLTGLSAGVPQLLIPKGSVL-EAPARRVADYGAAI-ALLPGEDSTEAIADSCQELQA 346 (384)
T ss_dssp H---HGGGCSEEEEC---SCTTHHHHHHHTTCCEEECCCSHHH-HHHHHHHHHHTSEE-ECCTTCCCHHHHHHHHHHHHH
T ss_pred H---HHhhCCEEEeC---CcHHHHHHHHHhCCCEEEccCcccc-hHHHHHHHHCCCeE-ecCcCCCCHHHHHHHHHHHHc
Confidence 4 45789999953 5678999999999999988752111 12233445556544 443 278899999999999
Q ss_pred CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 859 DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 859 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
|++.++++++..++... .-..++.+..++.+..
T Consensus 347 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~ 379 (384)
T 2p6p_A 347 KDTYARRAQDLSREISG---MPLPATVVTALEQLAH 379 (384)
T ss_dssp CHHHHHHHHHHHHHHHT---SCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHhh
Confidence 99998888776665432 2367777777776543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.5e-10 Score=96.61 Aligned_cols=94 Identities=20% Similarity=0.311 Sum_probs=66.5
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc------HHHHHH
Q 002431 338 SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM------AEAHAN 411 (922)
Q Consensus 338 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 411 (922)
...+..+|.++...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..++++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34566677777777777777777777777777777777777777777777777777777777777776 667777
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 002431 412 LASAYKDSGHVEAAIKSYKQ 431 (922)
Q Consensus 412 la~~~~~~g~~~~A~~~~~~ 431 (922)
++.++...|++++|+..+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 77777777766666554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-08 Score=90.11 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=71.4
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002431 356 DAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL 435 (922)
Q Consensus 356 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 435 (922)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..+++.+|.+|...|++++|+..|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCC
Q 002431 436 RPD 438 (922)
Q Consensus 436 ~p~ 438 (922)
.|+
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.87 E-value=8.7e-09 Score=90.52 Aligned_cols=83 Identities=19% Similarity=0.175 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 002431 322 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401 (922)
Q Consensus 322 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 401 (922)
+|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..|+++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56777777777777777788888888888888888888888888888888888888888888888888888888888877
Q ss_pred CCC
Q 002431 402 RPT 404 (922)
Q Consensus 402 ~p~ 404 (922)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-07 Score=103.55 Aligned_cols=160 Identities=13% Similarity=0.053 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHhhC-CCcHHHH
Q 002431 104 WSNLASAYMRKGRLNEAAQCCRQALALN-PLLVDAHSNLGNLMKAQGL---------VQEAYSCYLEALRIQ-PTFAIAW 172 (922)
Q Consensus 104 ~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~-p~~~~~~ 172 (922)
+..+...+.+.|+.++|+++|+++.+.+ +.+..+|..+..++...+. .++|.++|+++.... ..+..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3444455555555555555555555543 2244444444444443322 344555555544431 2234455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCChhHHHhHHHHHHHc
Q 002431 173 SNLAGLFMESGDLNRALQYYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT--RPNAIAFGNLASTYYER 249 (922)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~ 249 (922)
..+...|.+.|+.++|.++|+++.+.. ..+..+|..+...|.+.|+.++|.++|+++.+. .|+..+|..+...+.+.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 555555555555555555555554432 123445555555555555555555555555442 34455555555555555
Q ss_pred CChHHHHHHHHHHH
Q 002431 250 GQADMAILYYKQAI 263 (922)
Q Consensus 250 g~~~~A~~~~~~~l 263 (922)
|+.++|.++++++.
T Consensus 189 g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 189 KNADKVYKTLQRLR 202 (501)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555554
|
| >2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.8e-08 Score=110.73 Aligned_cols=160 Identities=11% Similarity=0.001 Sum_probs=106.3
Q ss_pred CCcEEEEecCCC-------CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHH
Q 002431 711 EDKFIFACFNQL-------YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEH 783 (922)
Q Consensus 711 ~~~~~~~~~~~~-------~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~ 783 (922)
+..+|+.++++. .|....+++++.+ . +.++++++.++. .+.+. ++ +++|.+.|++|..+
T Consensus 266 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~----~-~~~~v~~~g~~~-~~~l~------~~-~~~v~~~~~~~~~~- 331 (441)
T 2yjn_A 266 ERRRVCLTLGISSRENSIGQVSIEELLGAVGD----V-DAEIIATFDAQQ-LEGVA------NI-PDNVRTVGFVPMHA- 331 (441)
T ss_dssp SSCEEEEEC----------CCSTTTTHHHHHT----S-SSEEEECCCTTT-TSSCS------SC-CSSEEECCSCCHHH-
T ss_pred CCCEEEEECCCCcccccChHHHHHHHHHHHHc----C-CCEEEEEECCcc-hhhhc------cC-CCCEEEecCCCHHH-
Confidence 344666666654 2566667766543 2 466666554432 22121 45 57999999988644
Q ss_pred HHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCH
Q 002431 784 IRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDR 860 (922)
Q Consensus 784 ~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~ 860 (922)
++..+|+|+. .+|++|++|||++|+|+|+.+-..-. ..-+..+...|..- .+.. +.+++.+.+.++++|+
T Consensus 332 --ll~~ad~~V~---~~G~~t~~Ea~~~G~P~i~~p~~~dQ-~~na~~l~~~g~g~-~~~~~~~~~~~l~~~i~~ll~~~ 404 (441)
T 2yjn_A 332 --LLPTCAATVH---HGGPGSWHTAAIHGVPQVILPDGWDT-GVRAQRTQEFGAGI-ALPVPELTPDQLRESVKRVLDDP 404 (441)
T ss_dssp --HGGGCSEEEE---CCCHHHHHHHHHTTCCEEECCCSHHH-HHHHHHHHHHTSEE-ECCTTTCCHHHHHHHHHHHHHCH
T ss_pred --HHhhCCEEEE---CCCHHHHHHHHHhCCCEEEeCCcccH-HHHHHHHHHcCCEE-EcccccCCHHHHHHHHHHHhcCH
Confidence 3688999995 46778999999999999988753211 12234455556654 4442 7889999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 861 QKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
+.++++++..++.. .....++.++.+++...
T Consensus 405 ~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 405 AHRAGAARMRDDML---AEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHHHHHHHHHH---TSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 99988877766543 23678888888887654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.9e-09 Score=93.95 Aligned_cols=92 Identities=14% Similarity=0.105 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------HHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF------ADAWSN 106 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 106 (922)
...++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45566667777777777777777777777777666667777777777777777777777777666666 666666
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 002431 107 LASAYMRKGRLNEAAQCC 124 (922)
Q Consensus 107 la~~~~~~g~~~~A~~~~ 124 (922)
++.++...|++++|+..+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 666666666555554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.8e-08 Score=83.98 Aligned_cols=81 Identities=36% Similarity=0.601 Sum_probs=47.7
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Q 002431 339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 418 (922)
Q Consensus 339 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 418 (922)
..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++..++..++.++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 44555555555556666666666666665565555666666666666666666666666666666555555555555544
Q ss_pred c
Q 002431 419 S 419 (922)
Q Consensus 419 ~ 419 (922)
.
T Consensus 90 ~ 90 (91)
T 1na3_A 90 Q 90 (91)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.1e-08 Score=82.47 Aligned_cols=83 Identities=41% Similarity=0.620 Sum_probs=50.6
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 111 (922)
+..+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|++..++..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666555
Q ss_pred HHc
Q 002431 112 MRK 114 (922)
Q Consensus 112 ~~~ 114 (922)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-08 Score=86.62 Aligned_cols=91 Identities=21% Similarity=0.371 Sum_probs=69.7
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 002431 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAAD-GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (922)
Q Consensus 342 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (922)
...|..+...|++++|+..|+++++.+|.++. +++.+|.++...|++++|+..|+++++.+|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677777888888888888888888888887 88888888888888888888888888888887766643 5
Q ss_pred CHHHHHHHHHHHHhcCCCCH
Q 002431 421 HVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 421 ~~~~A~~~~~~al~~~p~~~ 440 (922)
.+.++...|+++...+|+++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 66677777777777666553
|
| >2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.8e-07 Score=87.25 Aligned_cols=138 Identities=11% Similarity=0.084 Sum_probs=91.8
Q ss_pred CcEEEEecCCCC-CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 712 DKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 712 ~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
..+++.++++.. ......+....+.++..+ .++++++.+.. . .++ +++|.|.|++|..+.+. +..+
T Consensus 21 ~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~-~~~~~~~g~~~-~---------~~~-~~~v~~~~~~~~~~~l~-~~~a 87 (170)
T 2o6l_A 21 NGVVVFSLGSMVSNMTEERANVIASALAQIP-QKVLWRFDGNK-P---------DTL-GLNTRLYKWIPQNDLLG-HPKT 87 (170)
T ss_dssp TCEEEEECCSCCTTCCHHHHHHHHHHHTTSS-SEEEEECCSSC-C---------TTC-CTTEEEESSCCHHHHHT-STTE
T ss_pred CCEEEEECCCCcccCCHHHHHHHHHHHHhCC-CeEEEEECCcC-c---------ccC-CCcEEEecCCCHHHHhc-CCCc
Confidence 346788888764 333444444444445555 45555544432 1 145 57999999998876664 3889
Q ss_pred cEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHH
Q 002431 791 DLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALT 867 (922)
Q Consensus 791 dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~~~~~~~ 867 (922)
|+|+. .+|++|++|||++|+|+|+.+-... ...-+..+...|..- ++.. +.+++.+++.++..|++.+++++
T Consensus 88 d~~I~---~~G~~t~~Ea~~~G~P~i~~p~~~~-Q~~na~~l~~~g~g~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~ 162 (170)
T 2o6l_A 88 RAFIT---HGGANGIYEAIYHGIPMVGIPLFAD-QPDNIAHMKARGAAV-RVDFNTMSSTDLLNALKRVINDPSYKENVM 162 (170)
T ss_dssp EEEEE---CCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHTTTSEE-ECCTTTCCHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CEEEE---cCCccHHHHHHHcCCCEEeccchhh-HHHHHHHHHHcCCeE-EeccccCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 99995 4778999999999999998875311 122345566667644 4431 78899999999999987555443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.7e-07 Score=85.08 Aligned_cols=110 Identities=17% Similarity=0.181 Sum_probs=77.0
Q ss_pred ChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----hCCHHHHHHH
Q 002431 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE----IGRVTDAIQD 394 (922)
Q Consensus 319 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~ 394 (922)
++++|+.+|+++.+.... .+. +|.+|...+..++|+++|+++.+. .++.+++.+|.+|.. .+++++|+.+
T Consensus 10 d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455666666666655422 222 666666666677777777777665 567777777777777 6777777777
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 002431 395 YIRAITIRPTMAEAHANLASAYKD----SGHVEAAIKSYKQALLLR 436 (922)
Q Consensus 395 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 436 (922)
|+++.+. .++.++++||.+|.. .+++++|+.+|+++.+.+
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777766 457777788888877 778888888888887763
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.1e-08 Score=85.16 Aligned_cols=89 Identities=16% Similarity=0.309 Sum_probs=57.8
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTD-NLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
+.+|..++..|++++|+..|+++++.+|.+.. +++.+|.++...|++++|+..|+++++.+|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45666677777777777777777777776666 77777777777777777777777777777766655532 4
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 002431 82 DIDLAIRYYLVAIELRPN 99 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~ 99 (922)
.+.+++..|+++...+|+
T Consensus 76 ~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHhccCcc
Confidence 445555666555554443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.69 E-value=5.3e-08 Score=82.84 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=53.2
Q ss_pred hCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002431 28 RNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98 (922)
Q Consensus 28 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 98 (922)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+..|++++++.|
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 35777777778888888888888888888888887777777777788888888888888888777776644
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.6e-08 Score=84.82 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=59.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 367 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|++.|++++++.|+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 367888888888888888888888888888888888888888888888888888888888888888887654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=3.4e-07 Score=83.08 Aligned_cols=111 Identities=18% Similarity=0.110 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHH
Q 002431 13 GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKE----KGDIDLAIR 88 (922)
Q Consensus 13 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 88 (922)
+++++|+..|+++.+... +.+. +|.+|...+..++|+++|+++.+. .++.+++.+|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 467788888888877653 3344 788887777888888888888775 567788888888877 778888888
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 002431 89 YYLVAIELRPNFADAWSNLASAYMR----KGRLNEAAQCCRQALALN 131 (922)
Q Consensus 89 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~ 131 (922)
+|+++.+. .++.+++.++.+|.. .+++++|+.+|+++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888765 567777888888877 778888888888777664
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.64 E-value=8.6e-08 Score=106.42 Aligned_cols=94 Identities=11% Similarity=0.036 Sum_probs=48.1
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHcc-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCcH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRI-----DPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITI-----RPTMA 406 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~ 406 (922)
+++++|.+|..+|++++|+.++++++++ .|++ ...++++|.+|..+|++++|+..|++++++ .|+++
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3445555555555555555555555543 2333 234555555555555555555555555543 23332
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002431 407 ---EAHANLASAYKDSGHVEAAIKSYKQAL 433 (922)
Q Consensus 407 ---~~~~~la~~~~~~g~~~~A~~~~~~al 433 (922)
++...++.++..++.+++|...|+++.
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234455555555555555555555554
|
| >4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=5.6e-07 Score=98.85 Aligned_cols=161 Identities=12% Similarity=0.035 Sum_probs=99.5
Q ss_pred CCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc
Q 002431 711 EDKFIFACFNQLY--KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (922)
Q Consensus 711 ~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~ 788 (922)
+..+||.++++.. +.....+..+.+.+...+.-.+|..+.+.. . ....+ +++|.+.+++|..+.+ .
T Consensus 236 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~-~-------~~~~~-~~~v~~~~~~p~~~lL---~ 303 (400)
T 4amg_A 236 GRRRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDL-A-------LLGEL-PANVRVVEWIPLGALL---E 303 (400)
T ss_dssp TCCEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCC-C-------CCCCC-CTTEEEECCCCHHHHH---T
T ss_pred CCcEEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCccc-c-------ccccC-CCCEEEEeecCHHHHh---h
Confidence 4457788887653 333344555555566666555554443321 0 01234 6899999999866655 6
Q ss_pred CCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHH
Q 002431 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTN 868 (922)
Q Consensus 789 ~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~ 868 (922)
.+|+|+ ..+|.+|+.|||++|||+|+.+-..- ...-+..+...|..- ..++.+...+++.++++|++.|++.++
T Consensus 304 ~~~~~v---~h~G~~s~~Eal~~GvP~v~~P~~~d-Q~~na~~v~~~G~g~--~l~~~~~~~~al~~lL~d~~~r~~a~~ 377 (400)
T 4amg_A 304 TCDAII---HHGGSGTLLTALAAGVPQCVIPHGSY-QDTNRDVLTGLGIGF--DAEAGSLGAEQCRRLLDDAGLREAALR 377 (400)
T ss_dssp TCSEEE---ECCCHHHHHHHHHHTCCEEECCC----CHHHHHHHHHHTSEE--ECCTTTCSHHHHHHHHHCHHHHHHHHH
T ss_pred hhhhee---ccCCccHHHHHHHhCCCEEEecCccc-HHHHHHHHHHCCCEE--EcCCCCchHHHHHHHHcCHHHHHHHHH
Confidence 699988 36778999999999999998864321 112234455567643 233334445677788999998877554
Q ss_pred HHHhhcccCCCCChHHHHHHHHHH
Q 002431 869 KLKSVRLTCPLFDTARWVKNLERS 892 (922)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~e~~ 892 (922)
- ++.+...+ .+...|+.+|++
T Consensus 378 l-~~~~~~~~--~~~~~a~~le~l 398 (400)
T 4amg_A 378 V-RQEMSEMP--PPAETAAXLVAL 398 (400)
T ss_dssp H-HHHHHTSC--CHHHHHHHHHHH
T ss_pred H-HHHHHcCC--CHHHHHHHHHHh
Confidence 3 33333333 677888888764
|
| >3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=7.4e-08 Score=101.49 Aligned_cols=145 Identities=12% Similarity=0.097 Sum_probs=104.2
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 711 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 711 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
.+.++++.++++.|. ..+..+ .|+.+|+|+|+|+. + .+ . +|.|.|++|.++....++.+
T Consensus 176 ~~~~~i~yaG~l~k~--~~L~~l------~~~~~f~ivG~G~~-~----------~l-~-nV~f~G~~~~~el~~~l~~~ 234 (339)
T 3rhz_A 176 GLKREIHFPGNPERF--SFVKEW------KYDIPLKVYTWQNV-E----------LP-Q-NVHKINYRPDEQLLMEMSQG 234 (339)
T ss_dssp EEEEEEEECSCTTTC--GGGGGC------CCSSCEEEEESCCC-C----------CC-T-TEEEEECCCHHHHHHHHHTE
T ss_pred CCCcEEEEeCCcchh--hHHHhC------CCCCeEEEEeCCcc-c----------Cc-C-CEEEeCCCCHHHHHHHHHhC
Confidence 345778888888873 222221 48899999999976 2 34 3 89999999999999999777
Q ss_pred cEEecC-CC-------CCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHH
Q 002431 791 DLFLDT-PL-------CNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQK 862 (922)
Q Consensus 791 dv~l~~-~~-------~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~ 862 (922)
|+.|-+ .+ ++-+..+.|+|++|+|||+......+.-+.. -|. + +++++.+++++.+..+ +++.
T Consensus 235 ~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~-----~~~-G-~~~~~~~e~~~~i~~l--~~~~ 305 (339)
T 3rhz_A 235 GFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIEN-----NGL-G-WIVKDVEEAIMKVKNV--NEDE 305 (339)
T ss_dssp EEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHH-----HTC-E-EEESSHHHHHHHHHHC--CHHH
T ss_pred CEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHh-----CCe-E-EEeCCHHHHHHHHHHh--CHHH
Confidence 777654 11 2347889999999999998776655544432 233 4 6778899999888887 5778
Q ss_pred HHHHHHHHHhhcccCCCCChHHHHHH
Q 002431 863 LQALTNKLKSVRLTCPLFDTARWVKN 888 (922)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (922)
+++|+++.++... .++...|+++
T Consensus 306 ~~~m~~na~~~a~---~~~~~~f~k~ 328 (339)
T 3rhz_A 306 YIELVKNVRSFNP---ILRKGFFTRR 328 (339)
T ss_dssp HHHHHHHHHHHTH---HHHTTHHHHH
T ss_pred HHHHHHHHHHHHH---HhhccHHHHH
Confidence 8999999887632 2555555544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-07 Score=104.29 Aligned_cols=123 Identities=10% Similarity=-0.034 Sum_probs=87.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhc-----CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC---cHHHHH
Q 002431 42 IYYQLHDYDMCIARNEEALRL-----EPR---FAECYGNMANAWKEKGDIDLAIRYYLVAIEL-----RPN---FADAWS 105 (922)
Q Consensus 42 ~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~ 105 (922)
.+..+|+|++|+..++++++. .++ ...++..+|.+|..+|+|++|+.+++++++. .|+ -...+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355677788887777777754 223 3566777888888888888888888887765 233 344677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 106 NLASAYMRKGRLNEAAQCCRQALAL-----NPLLVD---AHSNLGNLMKAQGLVQEAYSCYLEALRI 164 (922)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (922)
++|.+|..+|++++|+.+|++++++ +|+++. ....++.++..++.+++|...|.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888764 455544 4567777777888888888888777654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-06 Score=89.20 Aligned_cols=85 Identities=16% Similarity=0.058 Sum_probs=72.4
Q ss_pred HHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 364 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
++..+|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++++.++|..+ .
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~--t 345 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN--T 345 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH--H
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC--h
Confidence 34567899999999999999999999999999999999975 67888999999999999999999999999999875 3
Q ss_pred HHHHHhhc
Q 002431 444 CNLLHTLQ 451 (922)
Q Consensus 444 ~~l~~~~~ 451 (922)
+.+...+.
T Consensus 346 ~~~~~~l~ 353 (372)
T 3ly7_A 346 LYWIENGI 353 (372)
T ss_dssp HHHHHHSS
T ss_pred HHHHhCce
Confidence 44444333
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-06 Score=89.77 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002431 131 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202 (922)
Q Consensus 131 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 202 (922)
+|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++++.++|..
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 3445555555554444445555555555555555432 3344445555555555555555555555555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.5e-06 Score=84.59 Aligned_cols=105 Identities=15% Similarity=0.183 Sum_probs=67.9
Q ss_pred CCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHc-----CCHHHHHHHH
Q 002431 131 NPLLVDAHSNLGNLMKA-----QG------LVQEAYSCYLEALRIQPT--FAIAWSNLAGLFMES-----GDLNRALQYY 192 (922)
Q Consensus 131 ~p~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~~ 192 (922)
+|++++.++..|.+... .| ...+|...++++++++|+ +..+|..+|.+|... |+.++|.++|
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f 227 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF 227 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence 45566655555544322 12 245666777777777777 455777777777764 7777777777
Q ss_pred HHHHhcCCCC-HHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCC
Q 002431 193 KEAVKLKPTF-PDAYLNLGNVYKAL-GMPQEAIMCYQRAVQTRPN 235 (922)
Q Consensus 193 ~~~l~~~p~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~ 235 (922)
+++++++|+. ...++.++..++.. |+++++.+.+++++...|.
T Consensus 228 erAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 228 EHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 7777777753 77777777777663 7777777777777775554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.7e-06 Score=83.47 Aligned_cols=105 Identities=12% Similarity=0.039 Sum_probs=79.2
Q ss_pred hCCCcHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CChHHHHHH
Q 002431 164 IQPTFAIAWSNLAGLFME-----SG------DLNRALQYYKEAVKLKPT--FPDAYLNLGNVYKAL-----GMPQEAIMC 225 (922)
Q Consensus 164 ~~p~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~-----g~~~~A~~~ 225 (922)
.+|++...++-.|.+... .| ...+|...++++++++|+ +..++..+|.+|... |+.++|.++
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 466666665555544332 12 256788888888888888 555888888888884 888888888
Q ss_pred HHHHHhhCCC--hhHHHhHHHHHHHc-CChHHHHHHHHHHHhcCCC
Q 002431 226 YQRAVQTRPN--AIAFGNLASTYYER-GQADMAILYYKQAIGCDPR 268 (922)
Q Consensus 226 ~~~~~~~~p~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~ 268 (922)
|+++++++|+ ...++..+..++.. |+++++..++++++..+|.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 8888888884 77888888888774 8888888888888877665
|
| >2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.2e-06 Score=93.54 Aligned_cols=164 Identities=13% Similarity=0.132 Sum_probs=109.0
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEE-EEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccC
Q 002431 711 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSAL-WLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 789 (922)
Q Consensus 711 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l-~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~ 789 (922)
+..+|+.++++........+....+.++. ++.++ +.+|.+.. .+.+ ..+ +++|.+.|++|..+ ++..
T Consensus 254 ~~~~v~v~~Gs~~~~~~~~~~~~~~al~~-~~~~~~~~~g~~~~-~~~~------~~~-~~~v~~~~~~~~~~---~l~~ 321 (424)
T 2iya_A 254 GRPVLLIALGSAFTDHLDFYRTCLSAVDG-LDWHVVLSVGRFVD-PADL------GEV-PPNVEVHQWVPQLD---ILTK 321 (424)
T ss_dssp SCCEEEEECCSSSCCCHHHHHHHHHHHTT-CSSEEEEECCTTSC-GGGG------CSC-CTTEEEESSCCHHH---HHTT
T ss_pred CCCEEEEEcCCCCcchHHHHHHHHHHHhc-CCcEEEEEECCcCC-hHHh------ccC-CCCeEEecCCCHHH---HHhh
Confidence 34578888887765555555554444544 44555 55665432 2222 135 58899999988663 4678
Q ss_pred CcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHH
Q 002431 790 ADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQAL 866 (922)
Q Consensus 790 ~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~~ 866 (922)
+|+|+. .+|.+|++||+++|+|+|+.+-..- ...-+..+...|..- .+. -+.+++.+.+.++.+|++.++++
T Consensus 322 ~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~d-Q~~na~~l~~~g~g~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 396 (424)
T 2iya_A 322 ASAFIT---HAGMGSTMEALSNAVPMVAVPQIAE-QTMNAERIVELGLGR-HIPRDQVTAEKLREAVLAVASDPGVAERL 396 (424)
T ss_dssp CSEEEE---CCCHHHHHHHHHTTCCEEECCCSHH-HHHHHHHHHHTTSEE-ECCGGGCCHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCEEEE---CCchhHHHHHHHcCCCEEEecCccc-hHHHHHHHHHCCCEE-EcCcCCCCHHHHHHHHHHHHcCHHHHHHH
Confidence 999984 4677999999999999999876421 122344566667754 443 28899999999999999888777
Q ss_pred HHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 867 TNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
++..++... ....++.++.+++..+
T Consensus 397 ~~~~~~~~~---~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 397 AAVRQEIRE---AGGARAAADILEGILA 421 (424)
T ss_dssp HHHHHHHHT---SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---cCcHHHHHHHHHHHHh
Confidence 666554321 2456677777776643
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-06 Score=77.61 Aligned_cols=91 Identities=10% Similarity=-0.016 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhhC-C-CcHHHHHHHHHHHHhcCCHHHHHH
Q 002431 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG---RVTDAIQDYIRAITIR-P-TMAEAHANLASAYKDSGHVEAAIK 427 (922)
Q Consensus 353 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 427 (922)
....+.+.|.+.++.++.+.++.+.+|+++.+.+ +.++++..++..++.+ | ++.+.++.||..|.+.|+|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3566778888888888999999999999999988 6779999999999998 7 568999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHH
Q 002431 428 SYKQALLLRPDFPEAT 443 (922)
Q Consensus 428 ~~~~al~~~p~~~~~~ 443 (922)
+++++++.+|++..+.
T Consensus 93 y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHCTTCHHHH
T ss_pred HHHHHHhcCCCCHHHH
Confidence 9999999999987664
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.7e-06 Score=71.71 Aligned_cols=72 Identities=15% Similarity=0.085 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 368 DPLAADGLVNRGNTYKEIGR---VTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 368 ~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
+|++++.+..+|.++...++ .++|...++++++.+|+++.++..+|..+.+.|++++|+.+|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57888888888888876665 6899999999999999999999999999999999999999999999988883
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=2.6e-06 Score=76.21 Aligned_cols=94 Identities=12% Similarity=-0.024 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 14 SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLH---DYDMCIARNEEALRLE-P-RFAECYGNMANAWKEKGDIDLAIR 88 (922)
Q Consensus 14 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 88 (922)
....+.+.|.+.++.++.+.++.+.+|.++.+.+ +.++++.+++++++.+ | +..++++.+|..+++.|+|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4556677777777777778888888888888877 5668888888888877 6 457788888888888888888888
Q ss_pred HHHHHHhcCCCcHHHHHHH
Q 002431 89 YYLVAIELRPNFADAWSNL 107 (922)
Q Consensus 89 ~~~~al~~~p~~~~~~~~l 107 (922)
+++++++.+|++.++....
T Consensus 93 y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHH
Confidence 8888888888877665443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.2e-06 Score=69.98 Aligned_cols=71 Identities=23% Similarity=0.216 Sum_probs=48.6
Q ss_pred CCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002431 29 NPLRTDNLLLLGAIYYQLHD---YDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99 (922)
Q Consensus 29 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 99 (922)
+|+++..+..+|.+++..++ .++|...++++++.+|+++.++..+|..+++.|+|++|+.+|+++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46666777777776655444 567777777777777777777777777777777777777777777766665
|
| >1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-05 Score=88.92 Aligned_cols=157 Identities=11% Similarity=0.003 Sum_probs=98.0
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcE
Q 002431 713 KFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADL 792 (922)
Q Consensus 713 ~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv 792 (922)
.++|.++++.. .....++...+.++..+.-.+|.+|.+.. . ..++ +++|.+.|++|..+. +..+|+
T Consensus 239 ~~v~v~~Gs~~-~~~~~~~~~~~al~~~~~~~v~~~g~~~~-~--------~~~~-~~~v~~~~~~~~~~~---l~~~d~ 304 (415)
T 1iir_A 239 PPVYLGFGSLG-APADAVRVAIDAIRAHGRRVILSRGWADL-V--------LPDD-GADCFAIGEVNHQVL---FGRVAA 304 (415)
T ss_dssp CCEEEECC----CCHHHHHHHHHHHHHTTCCEEECTTCTTC-C--------CSSC-GGGEEECSSCCHHHH---GGGSSE
T ss_pred CeEEEeCCCCC-CcHHHHHHHHHHHHHCCCeEEEEeCCCcc-c--------ccCC-CCCEEEeCcCChHHH---HhhCCE
Confidence 36777777654 33444444444444455334444465432 1 1245 478999999986554 588999
Q ss_pred EecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHHHHH
Q 002431 793 FLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQALTNK 869 (922)
Q Consensus 793 ~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~~~~~ 869 (922)
|+. .+|.+|++|||++|+|+|+.+-..-. ..-+..+...|..- .+. -+.+++.+++.++ .|++.++++++.
T Consensus 305 ~v~---~~G~~t~~Ea~~~G~P~i~~p~~~dQ-~~na~~l~~~g~g~-~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~~ 378 (415)
T 1iir_A 305 VIH---HGGAGTTHVAARAGAPQILLPQMADQ-PYYAGRVAELGVGV-AHDGPIPTFDSLSAALATA-LTPETHARATAV 378 (415)
T ss_dssp EEE---CCCHHHHHHHHHHTCCEEECCCSTTH-HHHHHHHHHHTSEE-ECSSSSCCHHHHHHHHHHH-TSHHHHHHHHHH
T ss_pred EEe---CCChhHHHHHHHcCCCEEECCCCCcc-HHHHHHHHHCCCcc-cCCcCCCCHHHHHHHHHHH-cCHHHHHHHHHH
Confidence 994 46778999999999999998753211 12234455567654 443 2788999999999 999888887776
Q ss_pred HHhhcccCCCCChHHHHHHHHHH
Q 002431 870 LKSVRLTCPLFDTARWVKNLERS 892 (922)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~~e~~ 892 (922)
.++.. ..-..++.++.+|..
T Consensus 379 ~~~~~---~~~~~~~~~~~i~~~ 398 (415)
T 1iir_A 379 AGTIR---TDGAAVAARLLLDAV 398 (415)
T ss_dssp HHHSC---SCHHHHHHHHHHHHH
T ss_pred HHHHh---hcChHHHHHHHHHHH
Confidence 65532 223445555555554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.4e-05 Score=68.03 Aligned_cols=77 Identities=18% Similarity=0.104 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 371 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-------PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 371 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
++.-.+.+|..++..|++..|+.+|++|++.. +....++..||.++.++|++++|+.++++++++.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34556777888888888888888888887752 34577888888888888888888888888888888888776
Q ss_pred HHHH
Q 002431 444 CNLL 447 (922)
Q Consensus 444 ~~l~ 447 (922)
.++.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.7e-06 Score=91.64 Aligned_cols=94 Identities=12% Similarity=0.036 Sum_probs=76.2
Q ss_pred HcCCHHHHHHHHHHHHcc-----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCc---HHHHHHHH
Q 002431 350 QQGNYADAISCYNEVLRI-----DPLAA---DGLVNRGNTYKEIGRVTDAIQDYIRAITI-----RPTM---AEAHANLA 413 (922)
Q Consensus 350 ~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la 413 (922)
..|++++|+.++++++++ .|+++ .++.++|.+|..+|++++|+.++++++++ .|++ ...+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457888899988888874 45554 47888999999999999999999999875 3444 45788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHH
Q 002431 414 SAYKDSGHVEAAIKSYKQALLL-----RPDFPEAT 443 (922)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 443 (922)
.+|..+|++++|+.+|++++++ +|++|.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999885 67777554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.1e-05 Score=85.99 Aligned_cols=99 Identities=9% Similarity=0.064 Sum_probs=80.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHcc-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCc---HHHH
Q 002431 346 VIYKQQGNYADAISCYNEVLRI-----DPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITI-----RPTM---AEAH 409 (922)
Q Consensus 346 ~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~ 409 (922)
.-+..+|++++|+..+++++++ .|++ ..++.++|.+|..+|++++|+.+++++++. .|++ ...+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455788999999999999875 3455 457888999999999999999999999875 3444 4578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHHH
Q 002431 410 ANLASAYKDSGHVEAAIKSYKQALLL-----RPDFPEATC 444 (922)
Q Consensus 410 ~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 444 (922)
++||.+|..+|++++|+.+|++++++ +|++|.+..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 99999999999999999999999985 788876543
|
| >1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 | Back alignment and structure |
|---|
Probab=98.03 E-value=2.8e-05 Score=85.55 Aligned_cols=141 Identities=11% Similarity=0.023 Sum_probs=88.7
Q ss_pred cEEEEecCCCCC-CCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 713 KFIFACFNQLYK-MDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 713 ~~~~~~~~~~~K-~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
.+||.++++... .....++...+.++..+--.+|..|.+.. . + ..+ +++|.+.+++|..+ ++..+|
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~-~--~------~~~-~~~v~~~~~~~~~~---ll~~~d 304 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTEL-V--L------PDD-RDDCFAIDEVNFQA---LFRRVA 304 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTC-C--C------SCC-CTTEEEESSCCHHH---HGGGSS
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHCCCeEEEEeCCccc-c--c------cCC-CCCEEEeccCChHH---HhccCC
Confidence 467778887642 22233333333344444223343465432 1 1 245 57899999988544 358899
Q ss_pred EEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHHHH
Q 002431 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQALTN 868 (922)
Q Consensus 792 v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~~~~ 868 (922)
+|+. .+|.+|++||+++|+|+|+.+-..-. ..-+..+...|..- .+. .+.+++.+++.++ .|++.++++++
T Consensus 305 ~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~dQ-~~na~~l~~~g~g~-~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~ 378 (416)
T 1rrv_A 305 AVIH---HGSAGTEHVATRAGVPQLVIPRNTDQ-PYFAGRVAALGIGV-AHDGPTPTFESLSAALTTV-LAPETRARAEA 378 (416)
T ss_dssp EEEE---CCCHHHHHHHHHHTCCEEECCCSBTH-HHHHHHHHHHTSEE-ECSSSCCCHHHHHHHHHHH-TSHHHHHHHHH
T ss_pred EEEe---cCChhHHHHHHHcCCCEEEccCCCCc-HHHHHHHHHCCCcc-CCCCCCCCHHHHHHHHHHh-hCHHHHHHHHH
Confidence 9995 56788999999999999998753211 12233455556654 443 3788999999999 99987777665
Q ss_pred HHHh
Q 002431 869 KLKS 872 (922)
Q Consensus 869 ~~~~ 872 (922)
..++
T Consensus 379 ~~~~ 382 (416)
T 1rrv_A 379 VAGM 382 (416)
T ss_dssp HTTT
T ss_pred HHHH
Confidence 4433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.03 E-value=4.5e-05 Score=64.88 Aligned_cols=76 Identities=26% Similarity=0.284 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLE-------PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS 105 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 105 (922)
+...+.+|..++..++|..|+..|+++++.. +....++..+|.++.+.|++++|+.+++++++..|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445566666666666666666666666542 234555666666666666666666666666666666655544
Q ss_pred HHH
Q 002431 106 NLA 108 (922)
Q Consensus 106 ~la 108 (922)
++.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.5e-05 Score=83.92 Aligned_cols=85 Identities=8% Similarity=-0.028 Sum_probs=44.4
Q ss_pred cCCHHHHHHHHHHHHhc-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHH
Q 002431 80 KGDIDLAIRYYLVAIEL-----RPNF---ADAWSNLASAYMRKGRLNEAAQCCRQALAL-----NPLLV---DAHSNLGN 143 (922)
Q Consensus 80 ~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~ 143 (922)
.|+|++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+.+++++++. .|+++ ..+.++|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 34555555555555543 2332 234455555555555555555555555543 23332 24555566
Q ss_pred HHHHcCCHHHHHHHHHHHHhh
Q 002431 144 LMKAQGLVQEAYSCYLEALRI 164 (922)
Q Consensus 144 ~~~~~g~~~~A~~~~~~al~~ 164 (922)
+|..+|++++|+..|++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 666666666666666655553
|
| >3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00013 Score=79.78 Aligned_cols=158 Identities=11% Similarity=-0.027 Sum_probs=98.3
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
..+|+.++++... ...+++...+.+++.+ .++++...+.. .+ ..+. .++|.+.+++|..+.+ ..+|
T Consensus 221 ~~~Vlv~~Gs~~~-~~~~~~~~~~al~~~~-~~vv~~~g~~~-~~-------~~~~-~~~v~~~~~~~~~~ll---~~~d 286 (404)
T 3h4t_A 221 SPPVYVGFGSGPA-PAEAARVAIEAVRAQG-RRVVLSSGWAG-LG-------RIDE-GDDCLVVGEVNHQVLF---GRVA 286 (404)
T ss_dssp SCCEEECCTTSCC-CTTHHHHHHHHHHHTT-CCEEEECTTTT-CC-------CSSC-CTTEEEESSCCHHHHG---GGSS
T ss_pred CCeEEEECCCCCC-cHHHHHHHHHHHHhCC-CEEEEEeCCcc-cc-------cccC-CCCEEEecCCCHHHHH---hhCc
Confidence 3467778887654 3344444444455554 44444332221 11 1244 5789999998865544 6799
Q ss_pred EEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHHHH
Q 002431 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQALTN 868 (922)
Q Consensus 792 v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~~~~ 868 (922)
+|+ ..+|..|+.||+++|+|+|..+-..- ...-+..+...|... .+. -+.+++.+.+.++.+ ++.++++++
T Consensus 287 ~~v---~~gG~~t~~Eal~~GvP~v~~p~~~d-Q~~na~~~~~~G~g~-~l~~~~~~~~~l~~ai~~ll~-~~~~~~~~~ 360 (404)
T 3h4t_A 287 AVV---HHGGAGTTTAVTRAGAPQVVVPQKAD-QPYYAGRVADLGVGV-AHDGPTPTVESLSAALATALT-PGIRARAAA 360 (404)
T ss_dssp EEE---ECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHHTSEE-ECSSSSCCHHHHHHHHHHHTS-HHHHHHHHH
T ss_pred EEE---ECCcHHHHHHHHHcCCCEEEcCCccc-HHHHHHHHHHCCCEe-ccCcCCCCHHHHHHHHHHHhC-HHHHHHHHH
Confidence 998 34556899999999999998864221 122234556667755 443 278999999999998 877777665
Q ss_pred HHHhhcccCCCCChHHHHHHHHHHH
Q 002431 869 KLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
..+. + .. -..++.++.+|..+
T Consensus 361 ~~~~-~--~~-~~~~~~~~~i~~~~ 381 (404)
T 3h4t_A 361 VAGT-I--RT-DGTTVAAKLLLEAI 381 (404)
T ss_dssp HHTT-C--CC-CHHHHHHHHHHHHH
T ss_pred HHHH-H--hh-hHHHHHHHHHHHHH
Confidence 5443 2 12 34556666666654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=4.2e-05 Score=83.55 Aligned_cols=86 Identities=15% Similarity=0.049 Sum_probs=38.6
Q ss_pred HHcCCHHHHHHHHHHHHhc-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHH
Q 002431 78 KEKGDIDLAIRYYLVAIEL-----RPNF---ADAWSNLASAYMRKGRLNEAAQCCRQALAL-----NPLLV---DAHSNL 141 (922)
Q Consensus 78 ~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~l 141 (922)
..+|++++|+..++++++. .|++ ..++.+++.+|..+|++++|+.++++++.. .|+++ ..++++
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 3444555555555555443 1222 233444455555555555555555554432 12222 234444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 002431 142 GNLMKAQGLVQEAYSCYLEALR 163 (922)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~al~ 163 (922)
|.+|..+|++++|+..|+++++
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHH
Confidence 4444444444444444444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0002 Score=61.38 Aligned_cols=96 Identities=11% Similarity=-0.043 Sum_probs=70.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CcHHHHHHHHHHHHHcCCHHHH
Q 002431 12 SGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDM---CIARNEEALRLE-P-RFAECYGNMANAWKEKGDIDLA 86 (922)
Q Consensus 12 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A 86 (922)
......+.+.|.+....++.+.++.+.+|.++.+..+... ++.+++..++.+ | ..-++++.+|..+++.|+|++|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445566667777766677778888888888888776655 888888877766 4 4567778888888888888888
Q ss_pred HHHHHHHHhcCCCcHHHHHHH
Q 002431 87 IRYYLVAIELRPNFADAWSNL 107 (922)
Q Consensus 87 ~~~~~~al~~~p~~~~~~~~l 107 (922)
+++++.+++..|++.++....
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHH
Confidence 888888888888777665443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=5.4e-05 Score=88.00 Aligned_cols=107 Identities=6% Similarity=-0.144 Sum_probs=70.3
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHcc----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCcHHHHHHHH
Q 002431 339 APFNNLAVIYKQQGNYADAISCYNEVLRI----DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-PTMAEAHANLA 413 (922)
Q Consensus 339 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 413 (922)
.+|+.+...|++.|+.++|.++|.++.+. -..+..+|+.+...|++.|+.++|.++|+++.+.. ..+..+|+.+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 45777777777777777777777665432 23456667777777777777777777777776653 23466677777
Q ss_pred HHHHhcCC-HHHHHHHHHHHHhcCCCCHHHHHH
Q 002431 414 SAYKDSGH-VEAAIKSYKQALLLRPDFPEATCN 445 (922)
Q Consensus 414 ~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~ 445 (922)
.++++.|+ .++|.++|+++.+.+-......++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~ 240 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcc
Confidence 77777766 356667777777766665555554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00015 Score=62.19 Aligned_cols=92 Identities=11% Similarity=-0.022 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHH---HHHHHHHHHhhC-C-CcHHHHHHHHHHHHhcCCHHHHH
Q 002431 352 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD---AIQDYIRAITIR-P-TMAEAHANLASAYKDSGHVEAAI 426 (922)
Q Consensus 352 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~ 426 (922)
.....+.+.|.+....++.+.++.+.+|+++.+..+..+ ++..++..++.+ | ..-+..+.||..+.+.|+|++|+
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 345566677777777778888889999999988877666 888888888876 4 45678899999999999999999
Q ss_pred HHHHHHHhcCCCCHHHH
Q 002431 427 KSYKQALLLRPDFPEAT 443 (922)
Q Consensus 427 ~~~~~al~~~p~~~~~~ 443 (922)
++++.+++..|++..+.
T Consensus 95 ~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhCCCCHHHH
Confidence 99999999999987664
|
| >1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7 | Back alignment and structure |
|---|
Probab=97.74 E-value=9.7e-05 Score=79.00 Aligned_cols=119 Identities=8% Similarity=-0.057 Sum_probs=73.1
Q ss_pred CcCCCCCCCC--cEEEEecCC--CCCCCH--HHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcC--CCCCceEE
Q 002431 703 KRSDYGLPED--KFIFACFNQ--LYKMDP--EIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQG--VQPDQIIF 774 (922)
Q Consensus 703 ~r~~~~l~~~--~~~~~~~~~--~~K~~~--~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g--~~~~rv~f 774 (922)
.++.+|++.+ .+++.-..+ ..|.-| .+.++...+.++ +.++++.|.+.. .+..++..+..+ ....-+.+
T Consensus 170 ~~~~~~~~~~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~g~~~e-~~~~~~i~~~~~~~~~~~~~~l 246 (348)
T 1psw_A 170 TCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDE--GYQVVLFGSAKD-HEAGNEILAALNTEQQAWCRNL 246 (348)
T ss_dssp HHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHT--TCEEEECCCGGG-HHHHHHHHTTSCHHHHTTEEEC
T ss_pred HHHHhCCCCCCcEEEEECCCCccccCCCCHHHHHHHHHHHHHC--CCeEEEEeChhh-HHHHHHHHHhhhhccccceEec
Confidence 3456777533 233433332 457765 555554444443 678888775433 444433332221 10123578
Q ss_pred cCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 775 TDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 775 ~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
.|..+..+..++++.+|+++-.. + |+.-+ |.++|+|+|++-|.+...+.+
T Consensus 247 ~g~~sl~e~~ali~~a~l~I~~D--s-g~~Hl-Aaa~g~P~v~lfg~t~~~~~~ 296 (348)
T 1psw_A 247 AGETQLDQAVILIAACKAIVTND--S-GLMHV-AAALNRPLVALYGPSSPDFTP 296 (348)
T ss_dssp TTTSCHHHHHHHHHTSSEEEEES--S-HHHHH-HHHTTCCEEEEESSSCTTSSC
T ss_pred cCcCCHHHHHHHHHhCCEEEecC--C-HHHHH-HHHcCCCEEEEECCCCccccC
Confidence 89888899999999999999543 3 33444 889999999998887766654
|
| >2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00028 Score=77.94 Aligned_cols=149 Identities=14% Similarity=0.141 Sum_probs=94.2
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 711 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 711 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
+..+||.+++.........++...+-++..+--.+|.+|.... ..+...+.+ .+ .+++.+.++.|..+.+. ...+
T Consensus 270 ~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~--~~l~~~~~~-~~-~~~~~v~~w~pq~~vL~-h~~~ 344 (456)
T 2c1x_A 270 PTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKAR--VHLPEGFLE-KT-RGYGMVVPWAPQAEVLA-HEAV 344 (456)
T ss_dssp TTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGGG--GGSCTTHHH-HH-TTTEEEESCCCHHHHHT-STTE
T ss_pred CcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCcch--hhCCHHHHh-hc-CCceEEecCCCHHHHhc-CCcC
Confidence 4558888888776555566655555555545445677664321 111111111 12 36888889988765542 2268
Q ss_pred cEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhc-CCCCcccc---CCHHHHHHHHHHHhcCHHHHHHH
Q 002431 791 DLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLAT-GLGEEMIV---NSMKEYEERAVSLALDRQKLQAL 866 (922)
Q Consensus 791 dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~-g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~~ 866 (922)
|+|+ ...|.+|++||+++|||+|+.+-..-. ..-+..+... |..- .+. -+.++..+.+.+++.|++ ...+
T Consensus 345 ~~fv---th~G~~S~~Eal~~GvP~i~~P~~~dQ-~~Na~~l~~~~g~g~-~l~~~~~~~~~l~~~i~~ll~~~~-~~~~ 418 (456)
T 2c1x_A 345 GAFV---THCGWNSLWESVAGGVPLICRPFFGDQ-RLNGRMVEDVLEIGV-RIEGGVFTKSGLMSCFDQILSQEK-GKKL 418 (456)
T ss_dssp EEEE---ECCCHHHHHHHHHHTCCEEECCCSTTH-HHHHHHHHHTSCCEE-ECGGGSCCHHHHHHHHHHHHHSHH-HHHH
T ss_pred CEEE---ecCCcchHHHHHHhCceEEecCChhhH-HHHHHHHHHHhCeEE-EecCCCcCHHHHHHHHHHHHCCCc-HHHH
Confidence 8988 367899999999999999999864222 2344556665 7765 443 268888899999998874 3344
Q ss_pred HHHH
Q 002431 867 TNKL 870 (922)
Q Consensus 867 ~~~~ 870 (922)
|++.
T Consensus 419 r~~a 422 (456)
T 2c1x_A 419 RENL 422 (456)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00095 Score=74.53 Aligned_cols=152 Identities=15% Similarity=0.191 Sum_probs=93.3
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh-h-HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc
Q 002431 711 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-G-EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (922)
Q Consensus 711 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~-~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~ 788 (922)
+..+||.+++.........+....+-+...+--.+|.+|.... + ...+...+.+ .+ ++++.+.++.|..+.+. ..
T Consensus 294 ~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~-~~~~~v~~~~pq~~~L~-h~ 370 (482)
T 2pq6_A 294 PGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTN-EI-ADRGLIASWCPQDKVLN-HP 370 (482)
T ss_dssp TTCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHHHH-HH-TTTEEEESCCCHHHHHT-ST
T ss_pred CCceEEEecCCcccCCHHHHHHHHHHHHhcCCcEEEEEcCCccccccccCcHhHHH-hc-CCCEEEEeecCHHHHhc-CC
Confidence 3457888888765445554555555566666556676663210 0 0001111111 13 47889999998765442 23
Q ss_pred CCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHH-hcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHH
Q 002431 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCL-ATGLGEEMIV--NSMKEYEERAVSLALDRQKLQA 865 (922)
Q Consensus 789 ~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~-~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~ 865 (922)
.+|+|+ ..+|.+|++||+++|||+|+.+-..-. ..-+..+. ..|..- .+. -+.++..+.+.+++.|++ .+.
T Consensus 371 ~~~~~v---th~G~~s~~Eal~~GvP~i~~P~~~dQ-~~na~~~~~~~G~g~-~l~~~~~~~~l~~~i~~ll~~~~-~~~ 444 (482)
T 2pq6_A 371 SIGGFL---THCGWNSTTESICAGVPMLCWPFFADQ-PTDCRFICNEWEIGM-EIDTNVKREELAKLINEVIAGDK-GKK 444 (482)
T ss_dssp TEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTTH-HHHHHHHHHTSCCEE-ECCSSCCHHHHHHHHHHHHTSHH-HHH
T ss_pred CCCEEE---ecCCcchHHHHHHcCCCEEecCcccch-HHHHHHHHHHhCEEE-EECCCCCHHHHHHHHHHHHcCCc-HHH
Confidence 455677 367899999999999999999764222 23334443 577765 443 278899999999999885 244
Q ss_pred HHHHHH
Q 002431 866 LTNKLK 871 (922)
Q Consensus 866 ~~~~~~ 871 (922)
+|++.+
T Consensus 445 ~r~~a~ 450 (482)
T 2pq6_A 445 MKQKAM 450 (482)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00064 Score=74.33 Aligned_cols=138 Identities=12% Similarity=0.152 Sum_probs=92.4
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 711 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 711 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
+..+||.+|+.........+.....-++..+--.+|.+|.+. .+.+-..+.+. + .+|+.+.++.|..+.+ ..+
T Consensus 272 ~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~~--~~~lp~~~~~~-~-~~~~~vv~w~Pq~~vL---~h~ 344 (454)
T 3hbf_A 272 NSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDP--KEKLPKGFLER-T-KTKGKIVAWAPQVEIL---KHS 344 (454)
T ss_dssp TTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSCH--HHHSCTTHHHH-T-TTTEEEESSCCHHHHH---HST
T ss_pred CCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcc--hhcCCHhHHhh-c-CCceEEEeeCCHHHHH---hhc
Confidence 456889999987777777777777777766666777777542 22222222211 3 4788888999876555 445
Q ss_pred c--EEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHh-cCCCCcccc---CCHHHHHHHHHHHhcCH
Q 002431 791 D--LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLA-TGLGEEMIV---NSMKEYEERAVSLALDR 860 (922)
Q Consensus 791 d--v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~-~g~~~~~i~---~~~~~~~~~~~~l~~d~ 860 (922)
| +|+ ..+|.+|++||+++|||+|+.+-..- ...-+..+.. +|..- .+. -+.++..+.+.+++.|+
T Consensus 345 ~v~~fv---tH~G~~S~~Eal~~GvP~i~~P~~~D-Q~~Na~~v~~~~g~Gv-~l~~~~~~~~~l~~av~~ll~~~ 415 (454)
T 3hbf_A 345 SVGVFL---THSGWNSVLECIVGGVPMISRPFFGD-QGLNTILTESVLEIGV-GVDNGVLTKESIKKALELTMSSE 415 (454)
T ss_dssp TEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHTTSCSEE-ECGGGSCCHHHHHHHHHHHHSSH
T ss_pred CcCeEE---ecCCcchHHHHHHcCCCEecCccccc-HHHHHHHHHHhhCeeE-EecCCCCCHHHHHHHHHHHHCCC
Confidence 5 666 46778999999999999999875321 2223344554 46654 343 36788888888998885
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00099 Score=58.22 Aligned_cols=74 Identities=19% Similarity=0.026 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLH 448 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 448 (922)
.|...+.. ...++.++|.+.|+.+++.....+.+|...|..-.++|+..+|.+++.+++.++|.+.......+.
T Consensus 63 LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 63 IQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred HHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 34444433 455888899999999988877778889999999999999999999999999999988766544433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00063 Score=61.07 Aligned_cols=131 Identities=12% Similarity=0.060 Sum_probs=83.0
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCc---------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCcHHH
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLR---------TDNLLLLGAIYYQLHDYDMCIARNEEALRLE---PRFAEC 69 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~ 69 (922)
++...+.++..|.|+.|+-+.+.++....++ .+++..+|..++..++|..|...|+++++.. ++....
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5677888999999999999888876543222 3478899999999999999999999987653 222211
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002431 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145 (922)
Q Consensus 70 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 145 (922)
...++. ..... .... .+.+.+..+.++.||.+.+++++|+..++.+-.. ...+.....+|.+|
T Consensus 103 ~~~~~~----~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 103 RPSTGN----SASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp -------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred cccccc----cCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 111110 00000 0011 1335677888888888888888888887765222 24566777777665
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.24 Score=56.15 Aligned_cols=400 Identities=12% Similarity=0.023 Sum_probs=219.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCcHHHHHHHH---HHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLH--DYDMCIARNEEALRLEPRFAECYGNMA---NAW 77 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la---~~~ 77 (922)
+..|...++.|++..+..+...+ ...|-.+. ..........+ ... .+...+...|+.+..-.... ..+
T Consensus 10 ~~~a~~a~~~~~~~~~~~l~~~l-~~~pL~~y--l~y~~l~~~l~~~~~~----ev~~Fl~~~~~~p~~~~Lr~~~l~~l 82 (618)
T 1qsa_A 10 YAQIKQAWDNRQMDVVEQMMPGL-KDYPLYPY--LEYRQITDDLMNQPAV----TVTNFVRANPTLPPARTLQSRFVNEL 82 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHSGGG-TTSTTHHH--HHHHHHHHTGGGCCHH----HHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhh-cCCCcHHH--HHHHHHHhCcccCCHH----HHHHHHHHCCCChhHHHHHHHHHHHH
Confidence 56778888999998777665543 33453222 22222222222 344 33444566777765443333 334
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH--
Q 002431 78 KEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAY-- 155 (922)
Q Consensus 78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-- 155 (922)
.+.+++..-+.++.. .|.+...-..........|+..+|.....++.......+..+..+...+.+.|......
T Consensus 83 ~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~ 158 (618)
T 1qsa_A 83 ARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYL 158 (618)
T ss_dssp HHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred HhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHH
Confidence 456777777665543 37778888888888889999888888888777666555555555555555444433221
Q ss_pred HHHHHHHhhCCCcHHHHHHHH-----------HHHHH-cCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChHHH
Q 002431 156 SCYLEALRIQPTFAIAWSNLA-----------GLFME-SGDLNRALQYYKEAVKLKPTFP-DAYLNLGNVYKALGMPQEA 222 (922)
Q Consensus 156 ~~~~~al~~~p~~~~~~~~la-----------~~~~~-~g~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~g~~~~A 222 (922)
.-+..++.. ++......++ ..+.. ..+.......... ..+... ......+.......+.+.|
T Consensus 159 ~R~~~al~~--~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~---~~~~~~~~~~~~~~~~rlar~d~~~A 233 (618)
T 1qsa_A 159 ERIRLAMKA--GNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART---TGATDFTRQMAAVAFASVARQDAENA 233 (618)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH---SCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHC--CCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc---cCCChhhHHHHHHHHHHHHhcCHHHH
Confidence 111122111 1111111111 11000 0111111111100 111111 1122223333344577888
Q ss_pred HHHHHHHHhhCC-C----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 223 IMCYQRAVQTRP-N----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL 297 (922)
Q Consensus 223 ~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 297 (922)
...+........ + ...+..++..+...+...++...+.+......++. .....+...+..|+++.|...++.+-
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~~d~~~a~~~~~~l~ 312 (618)
T 1qsa_A 234 RLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGTGDRRGLNTWLARLP 312 (618)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHCCCHHHHHHHHHHcc
Confidence 888887754322 2 22233334344444545677777777665444433 33334444556799999999998765
Q ss_pred hhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCC--C---H
Q 002431 298 SLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL--A---A 372 (922)
Q Consensus 298 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~---~ 372 (922)
......+...+.+|..+...|+.++|..+|+++... . ..|-.++.. +.|..-. . ......+. . .
T Consensus 313 ~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~--~--~fYg~lAa~--~Lg~~~~-~----~~~~~~~~~~~~~~~ 381 (618)
T 1qsa_A 313 MEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ--R--GFYPMVAAQ--RIGEEYE-L----KIDKAPQNVDSALTQ 381 (618)
T ss_dssp TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--C--SHHHHHHHH--HTTCCCC-C----CCCCCCSCCCCHHHH
T ss_pred ccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC--C--ChHHHHHHH--HcCCCCC-C----CCCCCChhHHhhhcc
Confidence 544456778899999999999999999999998752 2 222222221 2232000 0 00001110 0 1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002431 373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432 (922)
Q Consensus 373 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 432 (922)
......+..+...|....|...+.......+ ..-...++.+....|.+..++....+.
T Consensus 382 ~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~--~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 382 GPEMARVRELMYWNLDNTARSEWANLVKSKS--KTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp SHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 1235567788899999999999888876532 344557788888999999888766543
|
| >2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0036 Score=69.21 Aligned_cols=145 Identities=15% Similarity=0.183 Sum_probs=92.0
Q ss_pred CCcEEEEecCCCC-CCCHHHHHHHHHHHhhCCCeEEEEecCC-hhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc
Q 002431 711 EDKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFP-AAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (922)
Q Consensus 711 ~~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~ 788 (922)
+..+||.+++... ......+....+-++..+--.+|.+|.+ ....+.+.+.... .+++...++.|..+.+. ..
T Consensus 275 ~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~l~~~~~~~~~~----~~~~~v~~w~pq~~vL~-h~ 349 (463)
T 2acv_A 275 DKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMEL----EGKGMICGWAPQVEVLA-HK 349 (463)
T ss_dssp TTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCCGGGSCTTHHHHHHH----HCSEEEESSCCHHHHHH-ST
T ss_pred CCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCCcccCChhHHHhhcc----CCCEEEEccCCHHHHhC-CC
Confidence 4458888998776 6666666666666666555566777653 1001122222210 25778888888766542 24
Q ss_pred CCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHH-HHhcCCCCccc---------cCCHHHHHHHHHHHhc
Q 002431 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSL-CLATGLGEEMI---------VNSMKEYEERAVSLAL 858 (922)
Q Consensus 789 ~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~-~~~~g~~~~~i---------~~~~~~~~~~~~~l~~ 858 (922)
.+|+|+ ...|.+|++||+++|||+|+.+-..-.. .-+.. +...|..- .+ .-+.++..+.+.++++
T Consensus 350 ~~~~fv---th~G~~s~~Eal~~GvP~i~~P~~~dQ~-~Na~~lv~~~g~g~-~l~~~~~~~~~~~~~~~l~~ai~~ll~ 424 (463)
T 2acv_A 350 AIGGFV---SHCGWNSILESMWFGVPILTWPIYAEQQ-LNAFRLVKEWGVGL-GLRVDYRKGSDVVAAEEIEKGLKDLMD 424 (463)
T ss_dssp TEEEEE---ECCCHHHHHHHHHTTCCEEECCCSTTHH-HHHHHHHHTSCCEE-ESCSSCCTTCCCCCHHHHHHHHHHHTC
T ss_pred ccCeEE---ecCCchhHHHHHHcCCCeeeccchhhhH-HHHHHHHHHcCeEE-EEecccCCCCccccHHHHHHHHHHHHh
Confidence 788988 4678999999999999999998633332 23344 46777765 44 1267888888888886
Q ss_pred -CHHHHHH
Q 002431 859 -DRQKLQA 865 (922)
Q Consensus 859 -d~~~~~~ 865 (922)
+++.+++
T Consensus 425 ~~~~~r~~ 432 (463)
T 2acv_A 425 KDSIVHKK 432 (463)
T ss_dssp TTCTHHHH
T ss_pred ccHHHHHH
Confidence 3444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0037 Score=54.66 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002431 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235 (922)
Q Consensus 183 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 235 (922)
++.++|.+.|+.+++.+.....+|...+..-.++|+...|.+++.+++...|.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 44444444444444443333444444444444444444444444444444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.42 E-value=0.23 Score=58.12 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
|.....|..++++.+.+.++|.+.++ .++....+.++..+.+.+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~~ 276 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSSA 276 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhccc
Confidence 56667788888899999999888874 445556666666666543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0021 Score=74.98 Aligned_cols=99 Identities=9% Similarity=-0.041 Sum_probs=87.0
Q ss_pred hHHHHhHHHHHHHcCChhHHHHHHHHHHhc----CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHH
Q 002431 304 PQALTNLGNIYMEWNMLPAAASYYKATLAV----TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID-PLAADGLVNR 378 (922)
Q Consensus 304 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 378 (922)
...++.+...|++.|+.++|..+|.++.+. ...+..+|+.+...|++.|+.++|.++|++|.+.. ..+..+|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 457899999999999999999999886543 46688999999999999999999999999998764 4678889999
Q ss_pred HHHHHHhCCH-HHHHHHHHHHHhhC
Q 002431 379 GNTYKEIGRV-TDAIQDYIRAITIR 402 (922)
Q Consensus 379 ~~~~~~~g~~-~~A~~~~~~al~~~ 402 (922)
..++++.|+. ++|.++|+++.+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 9999999985 78999999999875
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.37 E-value=0.27 Score=57.60 Aligned_cols=260 Identities=11% Similarity=0.028 Sum_probs=135.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhhCC--------C---hhHHHhH
Q 002431 179 FMESGDLNRALQYYKEAVKLK-PTFPD----AYLNLGNVYKALGMPQEAIMCYQRAVQTRP--------N---AIAFGNL 242 (922)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~-p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--------~---~~~~~~l 242 (922)
....|+.++++..+.+.+... .+++. +.+.+|.++... ..++...+...+.... . ..+...+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~--~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGF--GRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTT--THHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 445677777777777665422 12222 444555554444 4567777777665432 1 1233455
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCCh
Q 002431 243 ASTYYERGQADMAILYYKQAIGCDPRFL--EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320 (922)
Q Consensus 243 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 320 (922)
|.++.-.++ +++.+.+..++..+.... .+-..+|.++...|+-+-...++..+.+...++..-...+|..+...|+.
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 555554444 456677777665333221 24456677777778776666666665553332222233444445567777
Q ss_pred hHHHHHHHHHHhcCCCCchh----hhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002431 321 PAAASYYKATLAVTTGLSAP----FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYI 396 (922)
Q Consensus 321 ~~A~~~~~~a~~~~~~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 396 (922)
+.+..+.+.+.... ++.. -..+|..|...|+...-.+++..+.+-..++..-...+|..+...|+.+.+...+.
T Consensus 541 e~~~~li~~L~~~~--dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLASD--ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 77777766655432 2222 23456677788886555557776665332333333333334444555544444443
Q ss_pred HHHhhCCCcHHHHHHHHHHHHh--cCC-HHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002431 397 RAITIRPTMAEAHANLASAYKD--SGH-VEAAIKSYKQALLLRPDFPEATCNLL 447 (922)
Q Consensus 397 ~al~~~p~~~~~~~~la~~~~~--~g~-~~~A~~~~~~al~~~p~~~~~~~~l~ 447 (922)
...+. .++.+.+..+.++-. .|+ ..+++..+.++.. +++ ..+..+.+
T Consensus 619 ~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~d-~~Vrq~Ai 668 (963)
T 4ady_A 619 LLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPV-DFVRQAAM 668 (963)
T ss_dssp TGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CSS-HHHHHHHH
T ss_pred HHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CCC-HHHHHHHH
Confidence 33322 234444443333332 332 3678888877753 443 33333333
|
| >3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00055 Score=72.65 Aligned_cols=114 Identities=11% Similarity=-0.012 Sum_probs=72.4
Q ss_pred CCCCCCCc--EEEEecCC-CCCCCH--HHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCc
Q 002431 706 DYGLPEDK--FIFACFNQ-LYKMDP--EIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK 780 (922)
Q Consensus 706 ~~~l~~~~--~~~~~~~~-~~K~~~--~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~ 780 (922)
++|++.+. +++....+ ..|.-| .+.++...+.++ +..+++.|.+.. ++..++.....+ ..-+.+.|..+.
T Consensus 178 ~~g~~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~--g~~vvl~g~~~e-~~~~~~i~~~~~--~~~~~l~g~~sl 252 (349)
T 3tov_A 178 SHGLTDTDILIGFNIGSAVPEKRWPAERFAHVADYFGRL--GYKTVFFGGPMD-LEMVQPVVEQME--TKPIVATGKFQL 252 (349)
T ss_dssp HTTCCTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHH--TCEEEECCCTTT-HHHHHHHHHTCS--SCCEECTTCCCH
T ss_pred HcCCCCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhC--CCeEEEEeCcch-HHHHHHHHHhcc--cccEEeeCCCCH
Confidence 45675433 33333332 346543 344444444443 566777775533 555555555443 234788899899
Q ss_pred HHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 781 QEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 781 ~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
.+..++++.+|+++-. -+ |+.-+ |.++|+|+|++-|.+...+.|
T Consensus 253 ~e~~ali~~a~~~i~~--Ds-G~~Hl-Aaa~g~P~v~lfg~t~p~~~~ 296 (349)
T 3tov_A 253 GPLAAAMNRCNLLITN--DS-GPMHV-GISQGVPIVALYGPSNPFFYG 296 (349)
T ss_dssp HHHHHHHHTCSEEEEE--SS-HHHHH-HHTTTCCEEEECSSCCHHHHS
T ss_pred HHHHHHHHhCCEEEEC--CC-CHHHH-HHhcCCCEEEEECCCCccccC
Confidence 9999999999999942 23 44445 889999999999988777654
|
| >2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.007 Score=67.21 Aligned_cols=144 Identities=14% Similarity=0.136 Sum_probs=88.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh-------------h-HHHHHHHHHHcCCCCCc-eEEcC
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-------------G-EMRLRAYAVAQGVQPDQ-IIFTD 776 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-------------~-~~~l~~~~~~~g~~~~r-v~f~~ 776 (922)
..+||.+|+.........+....+-++..+.-.+|.++.+.. . ...+-.-+.+. + .+| ++..+
T Consensus 268 ~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~-~~~g~~v~~ 345 (480)
T 2vch_A 268 GSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLER-T-KKRGFVIPF 345 (480)
T ss_dssp TCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHH-T-TTTEEEEES
T ss_pred CceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECCccccccccccccccccchhhhcCHHHHHH-h-CCCeEEEeC
Confidence 458899999876666677766666677776666777764320 0 01111111111 2 133 45556
Q ss_pred CCCcHHHHHhccCCc--EEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHH-HhcCCCCcccc------CCHH
Q 002431 777 VAMKQEHIRRSSLAD--LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMIV------NSMK 847 (922)
Q Consensus 777 ~~~~~~~~~~~~~~d--v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~-~~~g~~~~~i~------~~~~ 847 (922)
+.|..+.+ ...| +|| .++|.+|++||+++|||+|+++-..- ...-+..+ ...|+.- .+. -+.+
T Consensus 346 w~Pq~~vL---~h~~v~~fv---tHgG~~S~~Eal~~GvP~i~~P~~~D-Q~~na~~l~~~~G~g~-~l~~~~~~~~~~~ 417 (480)
T 2vch_A 346 WAPQAQVL---AHPSTGGFL---THCGWNSTLESVVSGIPLIAWPLYAE-QKMNAVLLSEDIRAAL-RPRAGDDGLVRRE 417 (480)
T ss_dssp CCCHHHHH---HSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHTTCCEE-CCCCCTTSCCCHH
T ss_pred ccCHHHHh---CCCCcCeEE---ecccchhHHHHHHcCCCEEecccccc-chHHHHHHHHHhCeEE-EeecccCCccCHH
Confidence 88866555 4455 566 47789999999999999999986322 22233343 5667655 332 3678
Q ss_pred HHHHHHHHHhc---CHHHHHH
Q 002431 848 EYEERAVSLAL---DRQKLQA 865 (922)
Q Consensus 848 ~~~~~~~~l~~---d~~~~~~ 865 (922)
+..+++.+++. +++.+++
T Consensus 418 ~l~~av~~vl~~~~~~~~r~~ 438 (480)
T 2vch_A 418 EVARVVKGLMEGEEGKGVRNK 438 (480)
T ss_dssp HHHHHHHHHHTSTHHHHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHH
Confidence 88888888887 4454443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0037 Score=56.15 Aligned_cols=134 Identities=10% Similarity=-0.030 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCc
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---------AECYGNMANAWKEKGDIDLAIRYYLVAIELR---PNF 100 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~ 100 (922)
..+++.-...++..|.|+.|+-....++....++ ..++..+|++++..++|..|...|+++++.. +++
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456667778889999999999988876553222 3578899999999999999999999997652 222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 002431 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF 179 (922)
Q Consensus 101 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 179 (922)
......++. ..... .... .+.+.+..+.++.|+.+.+++++|+..++.+-.. ...+.+...||.+|
T Consensus 100 ~s~~~~~~~----~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 100 SKVRPSTGN----SASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp ----------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred CCccccccc----cCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 211111110 00000 0111 2346678899999999999999999998764322 23455666677665
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.65 Score=52.58 Aligned_cols=356 Identities=12% Similarity=-0.026 Sum_probs=202.7
Q ss_pred HHHHHHhhCCCchHHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002431 21 HSNSVYERNPLRTDNLLLLGAI---YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELR 97 (922)
Q Consensus 21 ~~~~~l~~~p~~~~~~~~la~~---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 97 (922)
.+...+..+|+.+..-...... +.+.+++..-+..+.. .|.+.......+.+....|+-.+|.....++....
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 3445556677776654444433 3456677776665543 47888888888888999999888888777776655
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-----
Q 002431 98 PNFADAWSNLASAYMRKGRLNEA--AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI----- 170 (922)
Q Consensus 98 p~~~~~~~~la~~~~~~g~~~~A--~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----- 170 (922)
...+.....+...+.+.|..... ..-+..++.. ++......++..+ ......-...+ .++..+|.+..
T Consensus 133 ~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~--~~~~~a~~l~~~l--~~~~~~~a~~~-~al~~~p~~~~~~~~~ 207 (618)
T 1qsa_A 133 KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKA--GNTGLVTVLAGQM--PADYQTIASAI-ISLANNPNTVLTFART 207 (618)
T ss_dssp SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT--TCHHHHHHHHHTC--CGGGHHHHHHH-HHHHHCGGGHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHhC--CHHHHHHHHHH-HHHHhChHhHHHHHhc
Confidence 44455555555555555543332 2222222221 1222111111111 00010000001 11111222111
Q ss_pred --------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHcCChHHHHHHHHHHHhhCCChhH
Q 002431 171 --------AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDA----YLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIA 238 (922)
Q Consensus 171 --------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 238 (922)
....++.......+.+.|...+....+...-+... ...++.-+...+...++...+.+......+...
T Consensus 208 ~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (618)
T 1qsa_A 208 TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL 287 (618)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH
T ss_pred cCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH
Confidence 12223333444558889999998876544333332 222333333344366777888876665555444
Q ss_pred HHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcC
Q 002431 239 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 318 (922)
Q Consensus 239 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 318 (922)
....+......|+++.|...+..+-..........+.+|.++...|+.++|..+|+++.+ +. ..|-.++.. +.|
T Consensus 288 ~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~--~fYg~lAa~--~Lg 361 (618)
T 1qsa_A 288 IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QR--GFYPMVAAQ--RIG 361 (618)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SC--SHHHHHHHH--HTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--ChHHHHHHH--HcC
Confidence 444555566789999999999887654445677889999999999999999999999875 22 223333222 222
Q ss_pred ChhHHHHHHHHHHhcCCCCc-----hhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 002431 319 MLPAAASYYKATLAVTTGLS-----APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 393 (922)
Q Consensus 319 ~~~~A~~~~~~a~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 393 (922)
....- . .....+... ..-...+..+...|....|...+..+.... +..-...++......|.++.++.
T Consensus 362 ~~~~~-~----~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~ 434 (618)
T 1qsa_A 362 EEYEL-K----IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQ 434 (618)
T ss_dssp CCCCC-C----CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCC-C----CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHH
Confidence 21000 0 000011100 112345677889999999999998887642 34556677888889999999886
Q ss_pred HHHHH
Q 002431 394 DYIRA 398 (922)
Q Consensus 394 ~~~~a 398 (922)
...+.
T Consensus 435 ~~~~~ 439 (618)
T 1qsa_A 435 ATIAG 439 (618)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 66543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.017 Score=50.27 Aligned_cols=75 Identities=8% Similarity=-0.070 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhhCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 369 PLAADGLVNRGNTYKEIGRV---TDAIQDYIRAITIRPT-MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 369 p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
..+.++.+++++++.+..+. .+++.+++..+...|. .-+.++.||..+.++|+|++|+++.+.+++..|++..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 56788999999999998754 5789999999998884 577899999999999999999999999999999987654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.02 Score=49.78 Aligned_cols=77 Identities=12% Similarity=0.041 Sum_probs=53.6
Q ss_pred CCchHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002431 30 PLRTDNLLLLGAIYYQLHDY---DMCIARNEEALRLEPR-FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS 105 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 105 (922)
..+.++.+.++.++.+..+. .+++.+++..++..|. .-++++.+|..+++.|+|++|.++.+.+++..|++.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34677777777777776654 4677777777776663 4567777777777777777777777777777777765543
Q ss_pred H
Q 002431 106 N 106 (922)
Q Consensus 106 ~ 106 (922)
.
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.015 Score=49.93 Aligned_cols=77 Identities=12% Similarity=0.031 Sum_probs=57.5
Q ss_pred CchHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002431 31 LRTDNLLLLGAIYYQLHDY---DMCIARNEEALRLEPR-FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSN 106 (922)
Q Consensus 31 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 106 (922)
.++.+.+.+|.++.+..+. .+++.+++..++.+|. .-++++.+|..+++.|+|++|.++.+.+++..|++.++...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3577788888888777654 4678888888877773 46778888888888888888888888888888887766544
Q ss_pred H
Q 002431 107 L 107 (922)
Q Consensus 107 l 107 (922)
.
T Consensus 118 k 118 (134)
T 3o48_A 118 K 118 (134)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.013 Score=50.39 Aligned_cols=76 Identities=8% Similarity=-0.072 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhhCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 368 DPLAADGLVNRGNTYKEIGRV---TDAIQDYIRAITIRPT-MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 368 ~p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
...++.+.+++++++.+..+. .+++..++..++.+|. .-+.++.||..+.+.|+|++|+++.+.+++..|++..+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 345678889999999888654 4688889888888884 477889999999999999999999999999999987654
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.56 Score=41.64 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=104.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 8 QMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAI 87 (922)
Q Consensus 8 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 87 (922)
..++-.+|+.++-+-.-+. |..++....++..++-.|+|..++-.+.+ -+...+.+..+.||.+.++|.+|+
T Consensus 11 Ks~kY~dYdt~~fLsa~L~---~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~ 82 (242)
T 3kae_A 11 KSIRYRDYETAIFLAACLL---PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAI 82 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHC-------CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhcccccHHHHHHHHHc---cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566766654433332 33335556667777777777777766542 345666666777777777777777
Q ss_pred HHHHHHHhc-----------------CCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------------
Q 002431 88 RYYLVAIEL-----------------RPNFAD-AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDA------------ 137 (922)
Q Consensus 88 ~~~~~al~~-----------------~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------------ 137 (922)
..++..++- +|.+.+ .+..+|..+.+.|+.++|+..+.......+--+.+
T Consensus 83 ~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~ 162 (242)
T 3kae_A 83 KSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQK 162 (242)
T ss_dssp HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcc
Confidence 777777732 122333 45566777777777777777777666554321111
Q ss_pred ------------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002431 138 ------------------HSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA-WSNLAGLFMESGDLNRALQYYKEAVKL 198 (922)
Q Consensus 138 ------------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (922)
+......+..... ...++-.+.-|.-... ....+..|...|-.++...+|....+.
T Consensus 163 ~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~-----~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~k 237 (242)
T 3kae_A 163 RDKENVRQTGRRGIEEEYVSDSIEFHESLSP-----SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRK 237 (242)
T ss_dssp C-----------CHHHHHHHHHHHHHHHCCH-----HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHhhhhccchhhhhhhHHHHHHhccH-----HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhc
Confidence 0111111111110 2233333445654433 345677788899999999999998888
Q ss_pred CCC
Q 002431 199 KPT 201 (922)
Q Consensus 199 ~p~ 201 (922)
+|.
T Consensus 238 DP~ 240 (242)
T 3kae_A 238 DPM 240 (242)
T ss_dssp STT
T ss_pred CCC
Confidence 875
|
| >2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.011 Score=62.20 Aligned_cols=105 Identities=13% Similarity=0.010 Sum_probs=64.5
Q ss_pred EEEEecCC-CCCCCHHHHHHHHHHHhhC--CCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 714 FIFACFNQ-LYKMDPEIFNTWCNILRRV--PNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 714 ~~~~~~~~-~~K~~~~~~~~~~~il~~~--p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
+++...++ ..|.-| .+-|.++.+.. .+.++++.+.++...+..++... +. ..+.+.|..+-.+..++++.+
T Consensus 181 i~l~pga~~~~k~wp--~~~~~~l~~~L~~~~~~vvl~~g~~~e~~~~~~i~~--~~--~~~~l~g~~sl~el~ali~~a 254 (326)
T 2gt1_A 181 AVFLHATTRDDKHWP--EEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAE--GF--AYVEVLPKMSLEGVARVLAGA 254 (326)
T ss_dssp EEEECCCSSGGGSCC--HHHHHHHHHHTTTTCCEEEECCSSHHHHHHHHHHHT--TC--TTEEECCCCCHHHHHHHHHTC
T ss_pred EEEEeCCCCccccCC--HHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHHHh--hC--CcccccCCCCHHHHHHHHHhC
Confidence 44443333 346544 24444444432 36677776445442333333332 23 246788988899999999999
Q ss_pred cEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 791 DLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 791 dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
|+++-. -+ |+.-+ |-++|+|+|++-|.+-..+.|
T Consensus 255 ~l~I~~--DS-G~~Hl-Aaa~g~P~v~lfg~t~p~~~~ 288 (326)
T 2gt1_A 255 KFVVSV--DT-GLSHL-TAALDRPNITVYGPTDPGLIG 288 (326)
T ss_dssp SEEEEE--SS-HHHHH-HHHTTCCEEEEESSSCHHHHC
T ss_pred CEEEec--CC-cHHHH-HHHcCCCEEEEECCCChhhcC
Confidence 999832 23 44455 667999999998887766654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.42 Score=57.12 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=65.5
Q ss_pred HHHHHcCCHHHHHH-HHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 002431 7 HQMYKSGSYKQALE-HSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDL 85 (922)
Q Consensus 7 ~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 85 (922)
......+++++|.+ ++.. -+ +...+......+...|.+++|++..+ ++... .......|++++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHH
Confidence 34456788888866 4411 11 01223556666777888888776552 22222 234567888888
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 86 AIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127 (922)
Q Consensus 86 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 127 (922)
|.+..+. .++...|..+|..+.+.|+++.|+++|.++
T Consensus 671 A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 671 ARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 8887543 355778888999999999999998888876
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.067 Score=61.61 Aligned_cols=112 Identities=18% Similarity=0.202 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHH--Hhc-CCHHHHHHHHHHHHhc--------CCCc----------HHHHHHH
Q 002431 15 YKQALEHSNSVYERNPLRTDNLLLLGAIY--YQL-HDYDMCIARNEEALRL--------EPRF----------AECYGNM 73 (922)
Q Consensus 15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~--~~~-g~~~~A~~~~~~al~~--------~p~~----------~~~~~~l 73 (922)
++.|+.+|+++.+.+|.... ++..+.+. ... .+--+|+.++.+.++. .+.+ ...+...
T Consensus 265 ~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 56777778877777775432 22222221 111 2234555555555431 1121 2234445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 74 ANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127 (922)
Q Consensus 74 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 127 (922)
+..+...|+++-|+++.++++...|.....|+.|+.+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 556666777777777777777777777777777777777777777777665544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.4 Score=57.32 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=21.5
Q ss_pred HHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 247 YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQC 296 (922)
Q Consensus 247 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 296 (922)
...|++++|.+..+. .++...|..+|..+.+.++++.|+++|.++
T Consensus 663 l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555444321 123345555555555555555555555543
|
| >2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... | Back alignment and structure |
|---|
Probab=95.61 E-value=0.11 Score=59.50 Aligned_cols=114 Identities=18% Similarity=0.155 Sum_probs=73.9
Q ss_pred CCCCC--CCCcEEEEecCCCC--CCCHHH-HHHHHHHH--hhCC-----CeEEEEecCChhh-HH--H----HHHHHHHc
Q 002431 705 SDYGL--PEDKFIFACFNQLY--KMDPEI-FNTWCNIL--RRVP-----NSALWLLRFPAAG-EM--R----LRAYAVAQ 765 (922)
Q Consensus 705 ~~~~l--~~~~~~~~~~~~~~--K~~~~~-~~~~~~il--~~~p-----~~~l~~~~~~~~~-~~--~----l~~~~~~~ 765 (922)
++.|+ .++.+++|-+.|+. |...-. +....+++ +..| ...+++.|.+..+ .. . +...+...
T Consensus 540 ~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~~i 619 (824)
T 2gj4_A 540 REYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVV 619 (824)
T ss_dssp HHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHhHHHHHHHHHHHHHHHHHh
Confidence 33454 35678888888874 987765 66666554 2454 3678888865321 22 2 33333322
Q ss_pred ----CCCCC--ceEEcCCCC--cHHHHHhccCCcEEecCCC--CCC-hhHHHHHHHcCCCee-eecCC
Q 002431 766 ----GVQPD--QIIFTDVAM--KQEHIRRSSLADLFLDTPL--CNA-HTTGTDILWAGLPMI-TLPLE 821 (922)
Q Consensus 766 ----g~~~~--rv~f~~~~~--~~~~~~~~~~~dv~l~~~~--~~g-~~t~~eal~~g~Pvv-~~~~~ 821 (922)
.+ ++ +|+|..--. ..+.+ +..+||++.|+. +|. ||+-+=||.-|++.| |++|-
T Consensus 620 n~Dp~v-~~~lKVvFl~nYdvslA~~I--~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGa 684 (824)
T 2gj4_A 620 NHDPVV-GDRLRVIFLENYRVSLAEKV--IPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGA 684 (824)
T ss_dssp TTCTTT-GGGEEEEEETTCCHHHHHHH--GGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTT
T ss_pred ccCccc-CCceEEEEECCCCHHHHHHH--hhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCc
Confidence 24 46 899887422 23334 899999999986 888 999999999998766 66553
|
| >3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.11 Score=52.47 Aligned_cols=85 Identities=8% Similarity=-0.020 Sum_probs=56.6
Q ss_pred EEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcc
Q 002431 744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM 823 (922)
Q Consensus 744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~ 823 (922)
..++.|.+....+++++...+. .+|.+.+.++ +...+|..+|+++. .||+|+.|++++|+|+|..+-...
T Consensus 186 i~vv~G~~~~~~~~l~~~~~~~----~~v~v~~~~~--~m~~~m~~aDlvI~----~gG~T~~E~~~~g~P~i~ip~~~~ 255 (282)
T 3hbm_A 186 ISIATSSSNPNLKKLQKFAKLH----NNIRLFIDHE--NIAKLMNESNKLII----SASSLVNEALLLKANFKAICYVKN 255 (282)
T ss_dssp EEEEECTTCTTHHHHHHHHHTC----SSEEEEESCS--CHHHHHHTEEEEEE----ESSHHHHHHHHTTCCEEEECCSGG
T ss_pred EEEEECCCchHHHHHHHHHhhC----CCEEEEeCHH--HHHHHHHHCCEEEE----CCcHHHHHHHHcCCCEEEEeCCCC
Confidence 3455676654467777766542 3688888754 45556889999996 356899999999999997654322
Q ss_pred hhhhHHHHHHhcCCCC
Q 002431 824 ATRVAGSLCLATGLGE 839 (922)
Q Consensus 824 ~~r~~~~~~~~~g~~~ 839 (922)
. ..-+..|...|...
T Consensus 256 Q-~~nA~~l~~~G~~~ 270 (282)
T 3hbm_A 256 Q-ESTATWLAKKGYEV 270 (282)
T ss_dssp G-HHHHHHHHHTTCEE
T ss_pred H-HHHHHHHHHCCCEE
Confidence 2 23445555556543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=95.36 E-value=1.5 Score=46.31 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002431 174 NLAGLFMESGDLNRALQYYKEAVKLKPT--F----PDAYLNLGNVYKALGMPQEAIMCYQRAV 230 (922)
Q Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (922)
.++..|+..|+|.+|.+.+.++.+.-.. + .+++..-..+|...+++.++...+.++.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455555555555555555554432111 1 1233444444555555555555554443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.086 Score=60.70 Aligned_cols=59 Identities=17% Similarity=0.002 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 432 (922)
.+...+..+...|+++-|+++.++++...|.+-..|+.|+.+|..+|+++.|+-.++.+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 45556777888999999999999999999999999999999999999999998766544
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.34 Score=47.43 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=39.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002431 7 HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF 66 (922)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 66 (922)
..+++.|+.++|++.....++.+|.|......+.+.++-.|+++.|.+-++.+.+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 455666666666666666666666666666666666666666666666666666666654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=94.82 E-value=4.8 Score=42.44 Aligned_cols=93 Identities=16% Similarity=0.011 Sum_probs=54.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHH----HH
Q 002431 140 NLGNLMKAQGLVQEAYSCYLEALRIQP------TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK---PTFPD----AY 206 (922)
Q Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~----~~ 206 (922)
.++..|...|++.+|.+.+.++.+.-. .-.+++.....+|...+++.++...+.++.... +.++. ..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 566666677777777666666655311 112345555666777777777777776665432 12222 33
Q ss_pred HHHHHHHH-HcCChHHHHHHHHHHHhh
Q 002431 207 LNLGNVYK-ALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 207 ~~l~~~~~-~~g~~~~A~~~~~~~~~~ 232 (922)
..-|..+. ..++|.+|...|-++++.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 44556666 677777777777776543
|
| >2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.36 Score=55.17 Aligned_cols=114 Identities=15% Similarity=0.124 Sum_probs=76.3
Q ss_pred cCCCCC--CCCcEEEEecCCC--CCCCHH-HHHHHHHHHh--hCC-----CeEEEEecCChhh-H--HHHHHHHHHc---
Q 002431 704 RSDYGL--PEDKFIFACFNQL--YKMDPE-IFNTWCNILR--RVP-----NSALWLLRFPAAG-E--MRLRAYAVAQ--- 765 (922)
Q Consensus 704 r~~~~l--~~~~~~~~~~~~~--~K~~~~-~~~~~~~il~--~~p-----~~~l~~~~~~~~~-~--~~l~~~~~~~--- 765 (922)
+++.|+ .++.+++|-+.|+ +|...- ++....++++ ..| ...+++.|.+..+ . ..+.+.+.+.
T Consensus 505 ~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~ 584 (796)
T 2c4m_A 505 LERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKLINSIADL 584 (796)
T ss_dssp HHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHhHHHHHHHHHHHHHHHHH
Confidence 444555 4567888888887 499887 6777666653 443 3677777765322 2 2232323222
Q ss_pred -----CCCCC--ceEEcCCCC--cHHHHHhccCCcEEecCCC--CCC-hhHHHHHHHcCCCee-eecC
Q 002431 766 -----GVQPD--QIIFTDVAM--KQEHIRRSSLADLFLDTPL--CNA-HTTGTDILWAGLPMI-TLPL 820 (922)
Q Consensus 766 -----g~~~~--rv~f~~~~~--~~~~~~~~~~~dv~l~~~~--~~g-~~t~~eal~~g~Pvv-~~~~ 820 (922)
.+ ++ +|+|..--. ..+.+ +..+||++.||. +|. ||+-+=+|.-|++.| |+.|
T Consensus 585 in~dp~~-~~~lKVvFl~nY~vslA~~I--~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDG 649 (796)
T 2c4m_A 585 VNNDPEV-SPLLKVVFVENYNVSPAEHI--LPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDG 649 (796)
T ss_dssp HHTCTTT-TTTEEEEEETTCCHHHHHHH--GGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESST
T ss_pred hcccccc-CCceEEEEECCCCHHHHHHH--hhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCC
Confidence 45 57 899987422 23334 899999999986 888 999999999999988 4444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.49 E-value=2.6e-06 Score=89.34 Aligned_cols=366 Identities=13% Similarity=0.118 Sum_probs=215.5
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002431 31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110 (922)
Q Consensus 31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 110 (922)
+.+.+|..+|.++...++..+|++.|-++ +++..+.....+..+.|++++-+.+++.+-+.. ..+..=..++.+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-CSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccHHHHHHH
Confidence 45778888898888888888888877443 445556666677778888888888887766542 223444566777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 111 YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 190 (922)
Q Consensus 111 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 190 (922)
|.+.++..+-.+.+. .|+.. -....|.-++..|.|+.|.-+|..+ .-|..|+.++...|+|..|.+
T Consensus 126 yAk~~rL~elEefl~-----~~N~A-~iq~VGDrcf~e~lYeAAKilys~i--------sN~akLAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-----GPNNA-HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD 191 (624)
T ss_dssp HHTSCSSSTTTSTTS-----CCSSS-CTHHHHHHHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCSGGGSSTT
T ss_pred HHhhCcHHHHHHHHc-----CCCcc-cHHHHHHHHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHH
Confidence 778777654333221 23322 2345677788888888776665432 123456677777788877776
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 002431 191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 270 (922)
Q Consensus 191 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 270 (922)
..+++ +++.+|-....+....+.+.-|..+--.++-. ++ -+..+...|...|.+++-+.+++..+++..-..
T Consensus 192 aArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-ad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHm 263 (624)
T 3lvg_A 192 GARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-AD--ELEELINYYQDRGYFEELITMLEAALGLERAHM 263 (624)
T ss_dssp TTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCH
T ss_pred HHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhccc-HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhH
Confidence 65544 55667777777777777777666555444422 21 122344556677888888888888887777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C-C------CChHHHHhHHHHHHHcCChhHHHHHH---------------
Q 002431 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSL-Q-P------SHPQALTNLGNIYMEWNMLPAAASYY--------------- 327 (922)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~-p------~~~~~~~~la~~~~~~~~~~~A~~~~--------------- 327 (922)
..+..+|.+|.+- +.++-.++++..... + | +....|..+..+|.+-.+++.|....
T Consensus 264 GmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkd 342 (624)
T 3lvg_A 264 GMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKD 342 (624)
T ss_dssp HHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTT
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHH
Confidence 7777777777654 345555544432211 1 1 12345777777777777777665321
Q ss_pred -----------HHHHhcC-CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHcc-----------CCCCHHHHHHHHHHHHH
Q 002431 328 -----------KATLAVT-TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI-----------DPLAADGLVNRGNTYKE 384 (922)
Q Consensus 328 -----------~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~l~~~~~~ 384 (922)
-+++... ...+...+.+-.++...=+....++.+++.-.+ +.++..+--.+-.+|..
T Consensus 343 ii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IE 422 (624)
T 3lvg_A 343 IITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT 422 (624)
T ss_dssp TGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHH
T ss_pred HHHHcchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 1111111 111222223333333333444555555554221 23445566667777888
Q ss_pred hCCHHHHHHHHHHHHhhCC--------------CcHHHHHHHHHHHHhcCCHHHHHHHH
Q 002431 385 IGRVTDAIQDYIRAITIRP--------------TMAEAHANLASAYKDSGHVEAAIKSY 429 (922)
Q Consensus 385 ~g~~~~A~~~~~~al~~~p--------------~~~~~~~~la~~~~~~g~~~~A~~~~ 429 (922)
..+++.= +..++... +-.+....-+.+|.+.+++++|+++.
T Consensus 423 EEDy~~L----R~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~ 477 (624)
T 3lvg_A 423 EEDYQAL----RTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELC 477 (624)
T ss_dssp TTCCHHH----HHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCS
T ss_pred hhhHHHH----HHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 8777543 22222211 12344455567788888888877643
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.98 Score=41.30 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=21.8
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHH
Q 002431 281 KDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 329 (922)
Q Consensus 281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 329 (922)
.+.|+++.|.+..++. ++...|..+|......|+++-|..+|.+
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3445555555554432 3344555555555555555555544443
|
| >1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.21 Score=57.05 Aligned_cols=114 Identities=16% Similarity=0.110 Sum_probs=75.2
Q ss_pred cCCCCC--CCCcEEEEecCCC--CCCCHH-HHHHHHHHHh--hCC-----CeEEEEecCChhh-H--HHHHHHHHHc---
Q 002431 704 RSDYGL--PEDKFIFACFNQL--YKMDPE-IFNTWCNILR--RVP-----NSALWLLRFPAAG-E--MRLRAYAVAQ--- 765 (922)
Q Consensus 704 r~~~~l--~~~~~~~~~~~~~--~K~~~~-~~~~~~~il~--~~p-----~~~l~~~~~~~~~-~--~~l~~~~~~~--- 765 (922)
++++|+ .++.+++|-+.|+ +|...- ++....++++ ..| ...+++.|.+..+ . ..+.+.+.+.
T Consensus 515 ~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~ 594 (796)
T 1l5w_A 515 KVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADV 594 (796)
T ss_dssp HHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHHHHHHHHHHHHHH
Confidence 444555 3567888888887 498877 6776666543 233 3677777765322 2 2232333222
Q ss_pred -----CCCCC--ceEEcCCCC--cHHHHHhccCCcEEecCCC--CCC-hhHHHHHHHcCCCee-eecC
Q 002431 766 -----GVQPD--QIIFTDVAM--KQEHIRRSSLADLFLDTPL--CNA-HTTGTDILWAGLPMI-TLPL 820 (922)
Q Consensus 766 -----g~~~~--rv~f~~~~~--~~~~~~~~~~~dv~l~~~~--~~g-~~t~~eal~~g~Pvv-~~~~ 820 (922)
.+ ++ +|+|..--. ..+.+ +..+||++.||. +|. ||+-+=+|.-|++.| |+.|
T Consensus 595 in~Dp~~-~~~lKVvfl~nY~vslA~~I--~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDG 659 (796)
T 1l5w_A 595 INNDPLV-GDKLKVVFLPDYCVSAAEKL--IPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDG 659 (796)
T ss_dssp HHTCTTT-GGGEEEEECSSCCHHHHHHH--GGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCT
T ss_pred hcccccc-CCceEEEEECCCCHHHHHHH--hhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCC
Confidence 35 57 899987422 23334 899999999986 888 999999999999988 4444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.22 E-value=1.1 Score=40.88 Aligned_cols=46 Identities=20% Similarity=0.074 Sum_probs=34.0
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 246 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQC 296 (922)
Q Consensus 246 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 296 (922)
..+.|+++.|.+..++. ++...|..+|......|+++-|..+|+++
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 35667777777776654 45567888888888888888888888774
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.19 E-value=2.9 Score=37.20 Aligned_cols=116 Identities=19% Similarity=0.131 Sum_probs=71.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 44 YQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123 (922)
Q Consensus 44 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 123 (922)
++-.+|+.++-+-.- +.|..++....++..++-.|.|..++-.+.+ -+...+.+.-+.||.+.+++.+|+..
T Consensus 13 ~kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~ 84 (242)
T 3kae_A 13 IRYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKS 84 (242)
T ss_dssp HHTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667766543322 2344446667778888888999888877643 34466677778888999999999999
Q ss_pred HHHHHHh----CC-------------CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002431 124 CRQALAL----NP-------------LLVD-AHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167 (922)
Q Consensus 124 ~~~~l~~----~p-------------~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 167 (922)
+++.+.- +| .+.+ .+..+|.++.+.|+.++|+..+.......|-
T Consensus 85 le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 85 LESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 9988842 12 2222 2344555555555555555555555554443
|
| >2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A | Back alignment and structure |
|---|
Probab=94.06 E-value=0.13 Score=49.77 Aligned_cols=63 Identities=14% Similarity=0.109 Sum_probs=42.0
Q ss_pred ceEEcCCCCcHHHHHhcc-CCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcch---hhhHHHHHHhcCCC
Q 002431 771 QIIFTDVAMKQEHIRRSS-LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMA---TRVAGSLCLATGLG 838 (922)
Q Consensus 771 rv~f~~~~~~~~~~~~~~-~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~---~r~~~~~~~~~g~~ 838 (922)
+|...++.+ +...++. .+|+++ ...|..|++|++++|+|.|..+.+... ...-+..+...|..
T Consensus 115 ~v~v~~f~~--~m~~~l~~~AdlvI---shaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~ 181 (224)
T 2jzc_A 115 KVIGFDFST--KMQSIIRDYSDLVI---SHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYV 181 (224)
T ss_dssp EEEECCSSS--SHHHHHHHHCSCEE---ESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCC
T ss_pred eEEEeeccc--hHHHHHHhcCCEEE---ECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCE
Confidence 455556644 3444577 899998 247789999999999999998865321 22224455555663
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.79 E-value=9 Score=41.48 Aligned_cols=57 Identities=12% Similarity=-0.105 Sum_probs=29.6
Q ss_pred HhHHHHHHHcCChHHHHHHHHHHHhc----CCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 240 GNLASTYYERGQADMAILYYKQAIGC----DPR--FLEAYNNLGNALKDVGRVDEAIQCYNQC 296 (922)
Q Consensus 240 ~~l~~~~~~~g~~~~A~~~~~~~l~~----~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a 296 (922)
..++.++...|++.+|...+...... .+. -.+.+......+...+++.+|...+.++
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45566666666666666666555411 100 1234445555555556666666555554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.67 E-value=6.8 Score=42.43 Aligned_cols=94 Identities=12% Similarity=0.045 Sum_probs=60.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHccC--CCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHh---hCCCc----HHH
Q 002431 342 NNLAVIYKQQGNYADAISCYNEVLRID--PLA----ADGLVNRGNTYKEIGRVTDAIQDYIRAIT---IRPTM----AEA 408 (922)
Q Consensus 342 ~~la~~~~~~g~~~~A~~~~~~al~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~----~~~ 408 (922)
..|+.++...|++.+|...+....... ..+ .+.+.....++...+++..|...+.++.. ..+.. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 456777777777777777777664321 111 34666677777778888888777777642 12222 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002431 409 HANLASAYKDSGHVEAAIKSYKQALLL 435 (922)
Q Consensus 409 ~~~la~~~~~~g~~~~A~~~~~~al~~ 435 (922)
+...|.++...++|.+|..+|..+++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 566777777788888888888777664
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=2.8 Score=44.57 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 434 (922)
+...++..+...|++.+|+..+..++..+|-+..++..+..++...|+..+|++.|+++.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556778888899999999999999999999999999999999999999999999988755
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=93.33 E-value=0.7 Score=45.24 Aligned_cols=28 Identities=18% Similarity=-0.126 Sum_probs=20.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 414 SAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (922)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (922)
......|+.++|.+.-.++++.-|..+.
T Consensus 108 l~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 108 NLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 3444568888888888888888777653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=1.6 Score=46.57 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=83.4
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHH-HHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 002431 349 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA-IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 427 (922)
Q Consensus 349 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 427 (922)
...|+.++|...+.+++.+.....-. ... ...+-.+ ...++... ..+...++..+...|++.+|+.
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~~~~a~~ 192 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVEDK------VLAHTAKAEAEIACGRASAVIA 192 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCHHHHHH
Confidence 34578888888888888764221100 000 0011111 11111111 2355668888999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHHHHHHhccCCCCC
Q 002431 428 SYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPS 481 (922)
Q Consensus 428 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~ 481 (922)
.+++++..+|-+..++..++.++...|+..+|...|+.+.+.+.+.+ |+.|+
T Consensus 193 ~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eL--G~~P~ 244 (388)
T 2ff4_A 193 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL--GIDPG 244 (388)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH--SCCCC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh--CCCCC
Confidence 99999999999999999999999999999999999999999887765 55554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.32 E-value=2 Score=53.26 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=14.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEA 59 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 59 (922)
++...+.+|.++...|++++|..+|+++
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3344455555555555555555555544
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.63 E-value=1.1 Score=49.20 Aligned_cols=79 Identities=19% Similarity=0.195 Sum_probs=54.0
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 418 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 418 (922)
.+..+|.+......++.|..+|.+|..+.|.+...++.+|.+....|+.-+|.-+|.+++......+.+..+|...+.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 4455666666666777777777777777777777777777777777777777777777776665566666666665554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=89.57 E-value=1.3e-05 Score=84.16 Aligned_cols=223 Identities=15% Similarity=0.185 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002431 134 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY 213 (922)
Q Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 213 (922)
.+.+|..+|..+...++..+|++.|-++ +++..+........+.|++++-+.++..+.+. -..+.+-..+..+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHH
Confidence 3445555555555555555555554322 22233344444444555555555555444332 22233344444555
Q ss_pred HHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002431 214 KALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293 (922)
Q Consensus 214 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 293 (922)
.+.++..+-.+.+ ..|+..-....|.-++..|.|+.|.-+|..+ + -|..++.++..+|++..|.+.-
T Consensus 127 Ak~~rL~elEefl-----~~~N~A~iq~VGDrcf~e~lYeAAKilys~i----s----N~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 127 AKTNRLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----S----NFGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HTSCSSSTTTSTT-----SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS----C----CCTTTSSSSSSCSGGGSSTTTT
T ss_pred HhhCcHHHHHHHH-----cCCCcccHHHHHHHHHHccCHHHHHHHHHhC----c----cHHHHHHHHHHHHHHHHHHHHH
Confidence 5555443322111 1233333344555555555555554443321 1 1223444555555555554443
Q ss_pred HHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 002431 294 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD 373 (922)
Q Consensus 294 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 373 (922)
++ .+++.+|.....++...+++.-|..+--..+-.... +..+...|...|.+++-+.+++..+.+...+..
T Consensus 194 rK-----Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhade----L~elv~~YE~~G~f~ELIsLlEaglglErAHmG 264 (624)
T 3lvg_A 194 RK-----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE----LEELINYYQDRGYFEELITMLEAALGLERAHMG 264 (624)
T ss_dssp TT-----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC----CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHH
T ss_pred Hh-----cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH----HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHH
Confidence 33 234455555555555555555554444333322111 222333444555555555555555555545555
Q ss_pred HHHHHHHHHHH
Q 002431 374 GLVNRGNTYKE 384 (922)
Q Consensus 374 ~~~~l~~~~~~ 384 (922)
.+..+|.+|.+
T Consensus 265 mFTELaILYsK 275 (624)
T 3lvg_A 265 MFTELAILYSK 275 (624)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHh
Confidence 55555554443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.35 E-value=5.9 Score=48.95 Aligned_cols=87 Identities=14% Similarity=0.047 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 002431 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN------AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL 276 (922)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 276 (922)
+..|..+..++.+.+.++.+++....+++..+. ...|..+-..+...++|++|...+...-... ...+.+..+
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-~r~~cLr~L 977 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-LKKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-SCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-HHHHHHHHH
Confidence 346667777777788888888887777765432 2256677777788888888877776554322 234456666
Q ss_pred HHHHHHcCCHHHHH
Q 002431 277 GNALKDVGRVDEAI 290 (922)
Q Consensus 277 ~~~~~~~g~~~~A~ 290 (922)
...+++.|+.++-.
T Consensus 978 V~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 978 VNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHCCHHHHH
T ss_pred HHHHHhCCChhhhh
Confidence 66666666655443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.78 E-value=1.6 Score=47.22 Aligned_cols=100 Identities=14% Similarity=-0.030 Sum_probs=76.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcH----H
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP---RFAECYGNMANAWKEKGDIDLAIRYYLVAIELR--PNFA----D 102 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~----~ 102 (922)
-..++..+|..|++.|++++|.+.|.++..... ...+.+..+..++...+++..+...+.++.... ..++ .
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 456788899999999999999999999876543 346788888889999999999999998886541 1122 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002431 103 AWSNLASAYMRKGRLNEAAQCCRQALALN 131 (922)
Q Consensus 103 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 131 (922)
.....|..+...++|.+|...|-.++...
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 33455666778899999999888887654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.75 E-value=2.2 Score=46.21 Aligned_cols=97 Identities=11% Similarity=-0.041 Sum_probs=53.3
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--CCcH----HHHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDP---LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR--PTMA----EAHA 410 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~----~~~~ 410 (922)
++..+|..|.+.|++++|.+.|.++..... .-.+.+.....++...+++..+...+.++.... ..++ ....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 444555555555555555555555544321 224455555666666666666666666664431 1111 2233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002431 411 NLASAYKDSGHVEAAIKSYKQALLLR 436 (922)
Q Consensus 411 ~la~~~~~~g~~~~A~~~~~~al~~~ 436 (922)
..|.++...++|.+|...|-.++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 44555666777777777777766543
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.24 E-value=2.1 Score=46.43 Aligned_cols=63 Identities=16% Similarity=0.050 Sum_probs=35.8
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLA-------ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
.++.+...|...+.+++|..+..+.. .|.+ ...++.+|.++.-.++|.+|.+.+..|+...|.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 34555555666666666666666553 2211 234555566666666666666666666665543
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.15 E-value=2.4 Score=46.47 Aligned_cols=76 Identities=21% Similarity=0.228 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHH
Q 002431 272 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 347 (922)
Q Consensus 272 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 347 (922)
.+..+|.+......++.|..+|.++..+.|++...++.+|.+....|+.-+|.-+|.+++......+.+..++...
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 3344455555555555555555555555555555555555555555555555555555544444444444444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.80 E-value=26 Score=35.71 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH-H
Q 002431 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLG-N 278 (922)
Q Consensus 200 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~-~ 278 (922)
-.+++.+..+|..|.+.+++.+|...|- +..++....+..+..-+...+ .|...+.+...+ .
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~~s~~~~a~mL~ew~~~~---------------~~~e~dlfiaRaVL 195 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTKESPEVLARMEYEWYKQD---------------ESHTAPLYCARAVL 195 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCTTHHHHHHHHHHHHHHTS---------------CGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCCchHHHHHHHHHHHHHhc---------------CCccHHHHHHHHHH
Confidence 4568888899999999999888888773 222222234333322222222 233444444433 3
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 002431 279 ALKDVGRVDEAIQCYNQCLS 298 (922)
Q Consensus 279 ~~~~~g~~~~A~~~~~~al~ 298 (922)
.|...++...|...++...+
T Consensus 196 ~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 45677888888887665543
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.69 E-value=0.85 Score=49.50 Aligned_cols=122 Identities=11% Similarity=0.089 Sum_probs=37.0
Q ss_pred HHhcCCHHHHHHHHHHHHh--c---------CCCcHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHhc-----
Q 002431 43 YYQLHDYDMCIARNEEALR--L---------EPRFAECYGNMANAWKEKGDIDLAI----------RYYLVAIEL----- 96 (922)
Q Consensus 43 ~~~~g~~~~A~~~~~~al~--~---------~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~----- 96 (922)
++..+++++|.++-...+. . ++-.+.+|+..+.++...|+..... ..+..++..
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 4566777777776665541 1 1223556666666666666554422 122222211
Q ss_pred CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002431 97 RPN-FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL-------VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166 (922)
Q Consensus 97 ~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 166 (922)
++. ....++.+...|...+.+++|..+..+.. .|.. ...++.+|.++.-+++|.+|.+.+..++...|
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 111 24455666666666666766666666663 2221 22334445555555555555555555554444
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.53 E-value=30 Score=35.20 Aligned_cols=28 Identities=14% Similarity=0.091 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002431 266 DPRFLEAYNNLGNALKDVGRVDEAIQCY 293 (922)
Q Consensus 266 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 293 (922)
.-.+++.+..+|..+.+.+++.+|..+|
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 3456778888888888888888888777
|
| >3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=84.45 E-value=2.5 Score=39.41 Aligned_cols=105 Identities=14% Similarity=0.187 Sum_probs=65.0
Q ss_pred EEEEec-CCC-----CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCC-CcHHHHHh
Q 002431 714 FIFACF-NQL-----YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVA-MKQEHIRR 786 (922)
Q Consensus 714 ~~~~~~-~~~-----~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~-~~~~~~~~ 786 (922)
++|+.- +.. .|-...+..+.. ++....+..++++|....+...+.+.++..|-..-.=.|+|.+ ... .+..
T Consensus 31 YIy~~r~~Gi~IIdL~kT~~~L~~A~~-~i~~~~~~~ilfV~tk~~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~-~~~~ 108 (202)
T 3j20_B 31 FIYRVRQDGLYVLDVRKTDERLKVAGK-FLAKFEPQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNP-AVKN 108 (202)
T ss_dssp GEEEECTTSCEEECHHHHHHHHHHHHH-HHHHSCSSCEEEECCCTTTHHHHHHHHHHHSCCCCCSSCCSSSSSCS-SSSS
T ss_pred cEeeeeCCCCEEECHHHHHHHHHHHHH-HHHhhCCCeEEEEecChHHHHHHHHHHHHHCCceeCceecCCCcccH-hHHh
Confidence 566654 222 233333444433 3344444667778887776777888888777532223455532 222 1334
Q ss_pred ccCCcEEecCCCCCChhHHHHHHHcCCCeeeecC
Q 002431 787 SSLADLFLDTPLCNAHTTGTDILWAGLPMITLPL 820 (922)
Q Consensus 787 ~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~ 820 (922)
+..-|+.+-+-|-.-...+.||-.+|+|||++..
T Consensus 109 ~~~Pdllvv~Dp~~d~~ai~EA~~l~IP~Ial~D 142 (202)
T 3j20_B 109 FFEPDVLIVTDPRADHQAMREAVEIGIPIVALVD 142 (202)
T ss_dssp CCCCSEEEESCTTTSHHHHHHHHHHTCCEEEEEC
T ss_pred ccCCCeEEEeCCccchHHHHHHHHcCCCEEEEEc
Confidence 5677887777777789999999999999997653
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.65 E-value=47 Score=33.52 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 133 LLVDAHSNLGNLMKAQGLVQEAYSCYL 159 (922)
Q Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (922)
.++..+..+|..+.+.+++.+|...|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 467777888888888888777777663
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 922 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-60 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-60 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-58 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-41 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-41 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-37 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-30 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-10 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-09 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-44 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 4e-38 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-36 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-26 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-04 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-29 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 5e-27 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 1e-26 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 5e-20 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 5e-15 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 6e-14 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 4e-23 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 7e-17 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 3e-15 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 2e-14 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 5e-05 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 7e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 8e-23 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 3e-21 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 7e-21 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 7e-20 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-10 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-08 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 9e-08 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-21 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-17 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 4e-17 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 7e-17 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-15 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 4e-13 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 1e-12 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 9e-12 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 1e-18 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 3e-18 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-17 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 1e-14 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 7e-13 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-07 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 4e-06 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 3e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 5e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 7e-04 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-18 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 3e-18 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-17 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-11 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 3e-18 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 1e-17 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 8e-17 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 3e-16 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 8e-16 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 7e-14 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 3e-13 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 5e-13 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 7e-06 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 0.004 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 5e-18 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-16 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 4e-15 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-14 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-14 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 3e-12 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 1e-09 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 2e-17 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 2e-17 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 3e-13 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 3e-11 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-15 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-12 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-12 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 7e-12 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-11 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-11 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 7e-06 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 4e-13 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 3e-11 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 3e-09 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 4e-09 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 6e-09 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 1e-08 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 1e-08 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 3e-12 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 3e-11 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 4e-11 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 5e-10 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 4e-09 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 4e-09 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 1e-08 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 4e-06 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 7e-12 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 8e-11 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 2e-09 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 6e-09 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 6e-09 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 1e-08 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 2e-07 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 1e-05 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 6e-11 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 3e-10 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 2e-09 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 3e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 3e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 3e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 6e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 7e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 6e-07 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 1e-06 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 1e-09 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 2e-09 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 4e-09 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 3e-08 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 1e-07 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 8e-07 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 2e-05 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 0.001 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-09 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 6e-09 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 7e-09 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-08 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-07 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-06 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 7e-06 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-05 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-05 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 4e-09 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 1e-07 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 6e-09 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 3e-08 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 2e-07 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 5e-07 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 6e-07 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 9e-07 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 2e-05 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 4e-04 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 7e-04 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 0.001 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 0.002 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 1e-07 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 3e-07 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 3e-07 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 1e-06 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 7e-06 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 2e-05 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 4e-05 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 0.003 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 2e-05 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 2e-05 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 3e-05 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 2e-04 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 5e-04 | |
| d1zu2a1 | 145 | a.118.8.1 (A:1-145) Mitochondrial import receptor | 0.001 | |
| d1zu2a1 | 145 | a.118.8.1 (A:1-145) Mitochondrial import receptor | 0.002 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 209 bits (532), Expect = 1e-60
Identities = 158/385 (41%), Positives = 225/385 (58%), Gaps = 1/385 (0%)
Query: 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
M LAH+ Y++G ++ A H ++ + P T LLLL +I++Q D + A++
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 63 EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
P AE Y N+ N +KE+G + AI +Y A+ L+P+F D + NLA+A + G + A Q
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 182
AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSNL +F
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ-TRPNAIAFGN 241
G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ + +A+ GN
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
LA YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CYN L L P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
+H +L NL NI E + A Y+ L V +A +NLA + +QQG +A+ Y
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362
Query: 362 NEVLRIDPLAADGLVNRGNTYKEIG 386
E +RI P AD N GNT KE+
Sbjct: 363 KEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 207 bits (527), Expect = 5e-60
Identities = 113/386 (29%), Positives = 181/386 (46%), Gaps = 1/386 (0%)
Query: 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIE 95
+ L YQ D++ + R EP +++ + +D + + +AI+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 96 LRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAY 155
P A+A+SNL + Y +G+L EA + R AL L P +D + NL + A G ++ A
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 156 SCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA 215
Y+ AL+ P S+L L G L A Y +A++ +P F A+ NLG V+ A
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 216 LGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYN 274
G AI +++AV PN A+ NL + E D A+ Y +A+ P +
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241
Query: 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
NL + G +D AI Y + + LQP P A NL N E + A Y L +
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQD 394
+ NNLA I ++QGN +A+ Y + L + P A N + ++ G++ +A+
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361
Query: 395 YIRAITIRPTMAEAHANLASAYKDSG 420
Y AI I PT A+A++N+ + K+
Sbjct: 362 YKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 203 bits (517), Expect = 1e-58
Identities = 134/381 (35%), Positives = 216/381 (56%), Gaps = 1/381 (0%)
Query: 72 NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
+A+ + GD + A R+ + P+ L+S + + RL+ +A A+ N
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 191
PLL +A+SNLGN+ K +G +QEA Y ALR++P F + NLA + +GD+ A+Q
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERG 250
Y A++ P +LGN+ KALG +EA CY +A++T+PN A+A+ NL + +G
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 251 QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310
+ +AI ++++A+ DP FL+AY NLGN LK+ D A+ Y + LSL P+H NL
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243
Query: 311 GNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL 370
+Y E ++ A Y+ + + + NLA K++G+ A+A CYN LR+ P
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303
Query: 371 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 430
AD L N N +E G + +A++ Y +A+ + P A AH+NLAS + G ++ A+ YK
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363
Query: 431 QALLLRPDFPEATCNLLHTLQ 451
+A+ + P F +A N+ +TL+
Sbjct: 364 EAIRISPTFADAYSNMGNTLK 384
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 154 bits (390), Expect = 2e-41
Identities = 84/217 (38%), Positives = 116/217 (53%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
L G A+ H +P D + LG + + +D +A AL
Sbjct: 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230
Query: 61 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
L P A +GN+A + E+G IDLAI Y AIEL+P+F DA+ NLA+A KG + EA
Sbjct: 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEA 290
Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
C AL L P D+ +NL N+ + QG ++EA Y +AL + P FA A SNLA +
Sbjct: 291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350
Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
+ G L AL +YKEA+++ PTF DAY N+GN K +
Sbjct: 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 154 bits (388), Expect = 3e-41
Identities = 82/251 (32%), Positives = 129/251 (51%), Gaps = 1/251 (0%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
+ L + + G ++A E P LG ++ + + I E+A+
Sbjct: 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196
Query: 61 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
L+P F + Y N+ N KE D A+ YL A+ L PN A NLA Y +G ++ A
Sbjct: 197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA 256
Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
R+A+ L P DA+ NL N +K +G V EA CY ALR+ PT A + +NLA +
Sbjct: 257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316
Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAF 239
E G++ A++ Y++A+++ P F A+ NL +V + G QEA+M Y+ A++ P A A+
Sbjct: 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376
Query: 240 GNLASTYYERG 250
N+ +T E
Sbjct: 377 SNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 143 bits (360), Expect = 1e-37
Identities = 87/328 (26%), Positives = 149/328 (45%), Gaps = 1/328 (0%)
Query: 140 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 199
L + G + A ++ R +P L+ + + L+R+ + A+K
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAIL-Y 258
P +AY NLGNVYK G QEAI Y+ A++ +P+ I + +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 259 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 318
Y A+ +P ++LGN LK +GR++EA CY + + QP+ A +NLG ++
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNR 378
+ A +++ + + + NL + K+ + A++ Y L + P A N
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243
Query: 379 GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
Y E G + AI Y RAI ++P +A+ NLA+A K+ G V A Y AL L P
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303
Query: 439 FPEATCNLLHTLQCVCSWEDRDRMFSEV 466
++ NL + + + E+ R++ +
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKA 331
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 121 bits (303), Expect = 4e-30
Identities = 62/183 (33%), Positives = 97/183 (53%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
++ L + + ++ + +A+ +P L +YY+ D+ I A+
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
L+P F + Y N+ANA KEKG + A Y A+ L P AD+ +NLA+ +G + EA
Sbjct: 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181
+ R+AL + P AHSNL ++++ QG +QEA Y EA+RI PTFA A+SN+ E
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
Query: 182 SGD 184
D
Sbjct: 386 MQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.0 bits (149), Expect = 1e-10
Identities = 12/90 (13%), Positives = 29/90 (32%)
Query: 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
G + + + G A + ++ P L+S + ++ + A+
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 434 LLRPDFPEATCNLLHTLQCVCSWEDRDRMF 463
P EA NL + + ++ +
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (136), Expect = 5e-09
Identities = 21/82 (25%), Positives = 34/82 (41%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
LA+ + G+ ++A+ E P L ++ Q + +EA+
Sbjct: 307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366
Query: 61 RLEPRFAECYGNMANAWKEKGD 82
R+ P FA+ Y NM N KE D
Sbjct: 367 RISPTFADAYSNMGNTLKEMQD 388
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 165 bits (418), Expect = 3e-44
Identities = 40/287 (13%), Positives = 78/287 (27%), Gaps = 21/287 (7%)
Query: 86 AIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145
+ +Y A L+ + D+ A + + L + ++ L + +L
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW 61
Query: 146 KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAV-------KL 198
A+ + L+ Q + S L A +Y + + +
Sbjct: 62 N------HAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV 115
Query: 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILY 258
LG + + + +L R Q A Y
Sbjct: 116 DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESY 174
Query: 259 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 318
Y+ A P + YN L G I Y + ++++ P A TNL +
Sbjct: 175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL---S 231
Query: 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVL 365
+ K V+ + A F + ++
Sbjct: 232 KALESRDEVKTKWGVSDFIKA-FIKFHGHVYLSKSLEKLSPLREKLE 277
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 147 bits (372), Expect = 4e-38
Identities = 31/240 (12%), Positives = 65/240 (27%), Gaps = 11/240 (4%)
Query: 57 EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116
+A L+ + A W + + Y + +A +
Sbjct: 10 RQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVE--QDLWNHA 64
Query: 117 LNEAAQCCRQALALNPLLVDAHSN---LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 173
+ + L A G + + + S
Sbjct: 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSS 124
Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233
L + + + ++ + ++LG++ + +A Y+ A Q
Sbjct: 125 QLGIISNKQTHTSAIVKPQSSS--CSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV 182
Query: 234 PN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292
P+ + LA +G I YY ++I F A NL AL + ++
Sbjct: 183 PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKT 242
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 143 bits (361), Expect = 1e-36
Identities = 53/372 (14%), Positives = 100/372 (26%), Gaps = 75/372 (20%)
Query: 118 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAG 177
++AQ RQA L + D+ + ++ +Q+ Y + L +A+
Sbjct: 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQ---KMLVTDLEYALDKKVEQD 59
Query: 178 LFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI 237
L+ A+ N + + +
Sbjct: 60 LWNH-----------------------AFKNQITTLQGQAKNRANPNRSEVQANLSLFL- 95
Query: 238 AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL 297
AS +Y + + D + LG ++ +
Sbjct: 96 ---EAASGFYTQ-----LLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSS-- 145
Query: 298 SLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 357
S L +LG+I N A SYY+ + P+N LA++ +G++
Sbjct: 146 SCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTT 205
Query: 358 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417
I Y R+I ++ A NL A
Sbjct: 206 IFYYC----------------------------------RSIAVKFPFPAASTNLQKALS 231
Query: 418 DSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMS 477
+ +K+ DF +A + S E + ++E + +
Sbjct: 232 KALESRDEVKT----KWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQK 287
Query: 478 VLPSVQPFHAIA 489
S Q H
Sbjct: 288 AFNSQQLVHVTV 299
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (281), Expect = 1e-26
Identities = 34/272 (12%), Positives = 78/272 (28%), Gaps = 43/272 (15%)
Query: 17 QALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAE-------- 68
Q+ ++ TD+ L ++ ++ L + +A
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLY---QKMLVTDLEYALDKKVEQDL 60
Query: 69 ---CYGNMANAWKE-----------------KGDIDLAIRYYLVAIE-------LRPNFA 101
+ N + ++ A +Y ++ +
Sbjct: 61 WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR 120
Query: 102 DAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161
S L ++ + + + + +LG++ + + +A S Y A
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHA 178
Query: 162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQE 221
++ P+ ++ LA L GD + YY ++ +K FP A NL ++
Sbjct: 179 AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRD 238
Query: 222 AIMCYQRAVQTRPNAIAFGNLASTYYERGQAD 253
+ + AF Y +
Sbjct: 239 EV---KTKWGVSDFIKAFIKFHGHVYLSKSLE 267
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (101), Expect = 1e-04
Identities = 14/139 (10%), Positives = 35/139 (25%), Gaps = 4/139 (2%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
+ L QA + + P L + D+ I ++
Sbjct: 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213
Query: 61 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
++ F N+ A + + ++ +F A+ L +
Sbjct: 214 AVKFPFPAASTNLQKALSKALESRDEVK----TKWGVSDFIKAFIKFHGHVYLSKSLEKL 269
Query: 121 AQCCRQALALNPLLVDAHS 139
+ + L+ +
Sbjct: 270 SPLREKLEEQFKELLFQKA 288
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 117 bits (294), Expect = 2e-29
Identities = 26/312 (8%), Positives = 76/312 (24%), Gaps = 18/312 (5%)
Query: 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 178
+A + L A + +A L + + L P FA W+ +
Sbjct: 13 QAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREV 72
Query: 179 FM----------ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG--MPQEAIMCY 226
+ + L + + +++ P + + + L +
Sbjct: 73 LQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC 132
Query: 227 QRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
R ++ + + I + +++ L +
Sbjct: 133 ARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192
Query: 285 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 344
++ ++ + + N +A +Y L
Sbjct: 193 PQPDSGPQGRLPENVLLKELELVQNAFFTDPN----DQSAWFYHRWLLGRAEPLFRCELS 248
Query: 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404
+ ++ E+ + ++ + + +Q + + P
Sbjct: 249 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308
Query: 405 MAEAHANLASAY 416
A +L S +
Sbjct: 309 RAAYLDDLRSKF 320
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 110 bits (276), Expect = 5e-27
Identities = 26/343 (7%), Positives = 70/343 (20%), Gaps = 51/343 (14%)
Query: 53 IARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAW-------- 104
R E +L+ + + + + + + P+FA W
Sbjct: 16 AKRLEREQKLKL-YQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQ 74
Query: 105 --SNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG--LVQEAYSCYLE 160
S + L +NP + L+
Sbjct: 75 HLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCAR 134
Query: 161 ALRIQPTFAIAWSNLAG-LFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 219
L W + L + + + ++ + L
Sbjct: 135 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194
Query: 220 QEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 279
++ + + L + D + +Y + + L
Sbjct: 195 PDSGPQGRLPENVLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEK 251
Query: 280 LKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA 339
+ E+ + + + L
Sbjct: 252 STVLQSELESCKELQELEPENKWCLLTIILLMRALDP----------------------- 288
Query: 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY 382
+ + ++ + +DP+ A L + + +
Sbjct: 289 -----------LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 109 bits (273), Expect = 1e-26
Identities = 28/278 (10%), Positives = 70/278 (25%), Gaps = 18/278 (6%)
Query: 57 EEALRLEPRFAECY----------GNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSN 106
+ L P FA + + + + + + + + P W +
Sbjct: 53 SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH 112
Query: 107 LASAYMRKGRLN--EAAQCCRQALALNPLLVDAHSNL-GNLMKAQGLVQEAYSCYLEALR 163
R N + C + L + +A E + +
Sbjct: 113 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172
Query: 164 IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 223
+ +W + L + + + + + N ++
Sbjct: 173 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF----TDPNDQSA 228
Query: 224 MCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKD 282
Y R + R + ++ + L L AL
Sbjct: 229 WFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDP 288
Query: 283 VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320
+ E +Q ++ ++ P L +L + ++ N +
Sbjct: 289 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSV 326
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 90.1 bits (222), Expect = 5e-20
Identities = 16/214 (7%), Positives = 42/214 (19%), Gaps = 5/214 (2%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLL-GAIYYQLHDYDMCIARNEEA 59
H ++ + LE E + +A +
Sbjct: 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSL 170
Query: 60 LRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNE 119
+ + + + + + + + N ++
Sbjct: 171 ITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA----FFTDPNDQ 226
Query: 120 AAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF 179
+A + L + E+ E + L
Sbjct: 227 SAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRAL 286
Query: 180 MESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY 213
LQY+ + P +L + +
Sbjct: 287 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 75.0 bits (183), Expect = 5e-15
Identities = 19/188 (10%), Positives = 46/188 (24%), Gaps = 4/188 (2%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
+ + + L ++S+ RN + + QLH +
Sbjct: 146 WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 205
Query: 61 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
+ + E D + +Y + R E+
Sbjct: 206 NVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELES 261
Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
+ ++ N + L + +E + + P A +L F+
Sbjct: 262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321
Query: 181 ESGDLNRA 188
+ +
Sbjct: 322 LENSVLKM 329
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 72.0 bits (175), Expect = 6e-14
Identities = 28/271 (10%), Positives = 67/271 (24%), Gaps = 17/271 (6%)
Query: 210 GNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRF 269
G + Q +R + + A + + + Q +G +P F
Sbjct: 3 GRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDF 62
Query: 270 LEAYNNLGNALK----------DVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW-- 317
+N L+ V + CL + P + +
Sbjct: 63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122
Query: 318 -NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLV 376
N + A V + A+ ++ + ++ +
Sbjct: 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 182
Query: 377 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
R ++ D+ + + L + + + Y + LL R
Sbjct: 183 YRSCLLPQLHPQPDSGPQGR----LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238
Query: 437 PDFPEATCNLLHTLQCVCSWEDRDRMFSEVE 467
+ + + S + + E+E
Sbjct: 239 AEPLFRCELSVEKSTVLQSELESCKELQELE 269
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.9 bits (245), Expect = 4e-23
Identities = 45/237 (18%), Positives = 81/237 (34%), Gaps = 11/237 (4%)
Query: 90 YLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA-Q 148
+V I F D + + R R A + R A+ LN L+K+ Q
Sbjct: 32 PVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ 91
Query: 149 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN 208
+ E + + QP W + L D ++ L++ + + A+ +
Sbjct: 92 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 151
Query: 209 LGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADM------AILYYKQ 261
V + + + + ++ N + + + Y +
Sbjct: 152 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 211
Query: 262 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH--PQALTNLGNIYME 316
I P A+N L L+D G + + NQ L LQPSH P + L +IY +
Sbjct: 212 MIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.4 bits (197), Expect = 7e-17
Identities = 27/276 (9%), Positives = 80/276 (28%), Gaps = 11/276 (3%)
Query: 152 QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGN 211
Q + + F + + RA + ++A++L +
Sbjct: 26 QNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRV 85
Query: 212 VYKALG-MPQEAIMCYQRAVQTRPNAIAFG-NLASTYYERGQADMAILYYKQAIGCDPRF 269
+ K+L E + ++ +P + + + + D +
Sbjct: 86 LLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 145
Query: 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 329
A+ + +++ D +Q +Q L + + A +
Sbjct: 146 YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE 205
Query: 330 TLAVTTGLSAPFNNLAVIYKQQGNYAD-----AISCYNEVLRIDPLAADG--LVNRGNTY 382
+ +N + +G D + N++L + P + + + Y
Sbjct: 206 VQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265
Query: 383 KEI--GRVTDAIQDYIRAITIRPTMAEAHANLASAY 416
+++ + + +A+ + +A+ + Y
Sbjct: 266 EDMLENQCDNKEDILNKALELCEILAKEKDTIRKEY 301
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.8 bits (185), Expect = 3e-15
Identities = 32/249 (12%), Positives = 72/249 (28%), Gaps = 13/249 (5%)
Query: 38 LLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKE-KGDIDLAIRYYLVAIEL 96
A+ + + +A+ L + K + D+ + Y IE
Sbjct: 48 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE 107
Query: 97 RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYS 156
+P W + ++ + L + A + +++ L
Sbjct: 108 QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQ 167
Query: 157 CYLEALRIQPTFAIAWSNLAGLFMESGDLN------RALQYYKEAVKLKPTFPDAYLNLG 210
+ L+ W+ + + N R +QY E +KL P A+ L
Sbjct: 168 YVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLK 227
Query: 211 NVYKALGMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYE--RGQADMAILYYKQAIGC 265
+ + G+ + + + +P+ L Y + Q D +A+
Sbjct: 228 GILQDRGL-SKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL 286
Query: 266 DPRFLEAYN 274
+ +
Sbjct: 287 CEILAKEKD 295
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.1 bits (178), Expect = 2e-14
Identities = 27/238 (11%), Positives = 73/238 (30%), Gaps = 12/238 (5%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLH-DYDMCIARNEEALRLE 63
+ + ++A + + E N + L D + + +
Sbjct: 49 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 108
Query: 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123
P+ + + + + D + + + AW + + Q
Sbjct: 109 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 168
Query: 124 CRQALALNPLLVDAHSNLGNL------MKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAG 177
Q L + + + + +++ LE +++ P AW+ L G
Sbjct: 169 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG 228
Query: 178 LFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKAL--GMPQEAIMCYQRAVQ 231
+ + G L++ + + L+P+ P L ++Y+ + +A++
Sbjct: 229 ILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 285
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 5e-05
Identities = 7/62 (11%), Positives = 17/62 (27%)
Query: 390 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHT 449
+ + + I + + + + E A K + A+ L
Sbjct: 27 NDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVL 86
Query: 450 LQ 451
L+
Sbjct: 87 LK 88
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (102), Expect = 7e-05
Identities = 14/139 (10%), Positives = 37/139 (26%), Gaps = 8/139 (5%)
Query: 346 VIYKQQGNYADAISCY-----NEVLRI--DPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398
V+Y+ + +AD N V++I D + R A + A
Sbjct: 10 VLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDA 69
Query: 399 ITIRPTMAEAHANLASAYKDSG-HVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWE 457
I + K + + + +P + + ++ +
Sbjct: 70 IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS 129
Query: 458 DRDRMFSEVEGIIRRQVNM 476
+++ + +
Sbjct: 130 QELEFIADILNQDAKNYHA 148
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.3 bits (243), Expect = 8e-23
Identities = 56/275 (20%), Positives = 106/275 (38%), Gaps = 19/275 (6%)
Query: 72 NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
++GD+ A+ + A++ P +AW L + + A R+ L L
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNL---------------A 176
P A L + L ++A + LR P +A +
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143
Query: 177 GLFMESGDLNRALQYYKEAVKL--KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 234
G + + + AV+L PD LG ++ G +A+ C+ A+ RP
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 203
Query: 235 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293
N + + L +T Q++ A+ Y++A+ P ++ + NLG + ++G EA++ +
Sbjct: 204 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 263
Query: 294 NQCLSLQPSHPQALTNLGNIYME-WNMLPAAASYY 327
+ L++Q G + W+ L A S
Sbjct: 264 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 298
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.7 bits (231), Expect = 3e-21
Identities = 49/313 (15%), Positives = 96/313 (30%), Gaps = 39/313 (12%)
Query: 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
+ + G A+ + +++P + LG + + I+ L L
Sbjct: 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 82
Query: 63 EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA------------ 110
+P +A ++ + A + P +A +
Sbjct: 83 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 142
Query: 111 ---YMRKGRLNEAAQCCRQALAL--NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 165
+ E + A+ L + D LG L G +A C+ AL ++
Sbjct: 143 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 202
Query: 166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMC 225
P + W+ L A+ Y+ A++L+P + + NLG LG +EA+
Sbjct: 203 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 262
Query: 226 YQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR 285
+ A+ + + E ++ L AL +G+
Sbjct: 263 FLEALNMQRKSRGPRGEGGAMSE----------------------NIWSTLRLALSMLGQ 300
Query: 286 VDEAIQCYNQCLS 298
D + LS
Sbjct: 301 SDAYGAADARDLS 313
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.6 bits (228), Expect = 7e-21
Identities = 49/335 (14%), Positives = 92/335 (27%), Gaps = 43/335 (12%)
Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
+++G L A A+ +P ++A LG A S
Sbjct: 19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 78
Query: 161 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 220
L ++P A LA F +A + ++ ++ P + G+
Sbjct: 79 CLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 138
Query: 221 EAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI--GCDPRFLEAYNNLGN 278
+ + + A+ + LG
Sbjct: 139 SK------------------RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180
Query: 279 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS 338
G D+A+ C+ LS++P+ LG N A + Y+ L + G
Sbjct: 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240
Query: 339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398
NL + G + +A+ + E L + + G + I
Sbjct: 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI------------- 287
Query: 399 ITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
+ L A G +A + + L
Sbjct: 288 ----------WSTLRLALSMLGQSDAYGAADARDL 312
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.5 bits (220), Expect = 7e-20
Identities = 43/275 (15%), Positives = 87/275 (31%), Gaps = 20/275 (7%)
Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233
++ GDL A+ ++ AV+ P +A+ LG AI +R ++ +
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 234 PNAIAFGNLASTYYERG-QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292
P+ + + A + + P +
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA------------ 131
Query: 293 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA-TLAVTTGLSAPFNNLAVIYKQQ 351
+ LG++ + L + A L T+ L V++
Sbjct: 132 ------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 185
Query: 352 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 411
G Y A+ C+ L + P G T + +A+ Y RA+ ++P + N
Sbjct: 186 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 245
Query: 412 LASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
L + + G A++ + +AL ++
Sbjct: 246 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 280
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.4 bits (147), Expect = 2e-10
Identities = 26/177 (14%), Positives = 54/177 (30%), Gaps = 13/177 (7%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYE--RNPLRTDNLLLLGAIYYQLHDYDMCIARNEE 58
+ + + + E + + D LG ++ +YD +
Sbjct: 138 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 197
Query: 59 ALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118
AL + P + + + A+ Y A+EL+P + + NL + + G
Sbjct: 198 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 257
Query: 119 EAAQCCRQALALNP-----------LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164
EA + +AL + + + S L + G + L
Sbjct: 258 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 314
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 1e-08
Identities = 18/120 (15%), Positives = 39/120 (32%)
Query: 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 402
+ Q+G+ +A+ + ++ DP + G T E + AI R + ++
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 403 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRM 462
P A LA ++ + A + + L P + + +
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (124), Expect = 9e-08
Identities = 36/234 (15%), Positives = 65/234 (27%), Gaps = 25/234 (10%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
+ + + A + + + + A+
Sbjct: 104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163
Query: 61 RL--EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118
RL + + + G+ D A+ + A+ +RPN W+ L + +
Sbjct: 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSE 223
Query: 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 178
EA R+AL L P + + NLG G +EA +LEAL +Q +
Sbjct: 224 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 283
Query: 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232
+ + L LG R + T
Sbjct: 284 SE-----------------------NIWSTLRLALSMLGQSDAYGAADARDLST 314
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 92.8 bits (230), Expect = 2e-21
Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 1/133 (0%)
Query: 79 EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138
+G + A+ + AI+ P A S+ G A + Q++ L P +
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67
Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRI-QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK 197
S L +L+KA ++ A + + L M S D + + + +
Sbjct: 68 SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127
Query: 198 LKPTFPDAYLNLG 210
L+ +
Sbjct: 128 LRQEKGFLANDTS 140
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 81.2 bits (200), Expect = 2e-17
Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 1/127 (0%)
Query: 111 YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI 170
+ +G+L +A + +A+ +P S+ L+ G + A ++++++ P +
Sbjct: 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65
Query: 171 AWSNLAGLFMESGDLNRALQYYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRA 229
S L L + Q A L L N+ ++ +
Sbjct: 66 GASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 125
Query: 230 VQTRPNA 236
+ R
Sbjct: 126 EELRQEK 132
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 80.1 bits (197), Expect = 4e-17
Identities = 15/136 (11%), Positives = 34/136 (25%), Gaps = 1/136 (0%)
Query: 245 TYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 304
GQ A+ +AI P+ ++ L G + A + Q + L P +
Sbjct: 5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 64
Query: 305 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP-FNNLAVIYKQQGNYADAISCYNE 363
+ L ++ A + + +Y +
Sbjct: 65 PGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ 124
Query: 364 VLRIDPLAADGLVNRG 379
+ + +
Sbjct: 125 IEELRQEKGFLANDTS 140
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 79.3 bits (195), Expect = 7e-17
Identities = 22/150 (14%), Positives = 46/150 (30%), Gaps = 3/150 (2%)
Query: 48 DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL 107
+ EA++ P+ A + GD + A + +I+L P + S L
Sbjct: 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70
Query: 108 ASAYMRKGRLNEAAQ-CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
+ AQ + + NL ++ L+ ++
Sbjct: 71 RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130
Query: 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAV 196
++ + F + D++ L Y E
Sbjct: 131 EKGFLANDTS--FSDVRDIDDRLGGYIELF 158
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 74.7 bits (183), Expect = 3e-15
Identities = 19/170 (11%), Positives = 42/170 (24%), Gaps = 36/170 (21%)
Query: 278 NALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL 337
NAL + G++ +A++ + + P
Sbjct: 5 NALSE-GQLQQALELLIEAIKASPKDASLR------------------------------ 33
Query: 338 SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
++ + G++ A + +++ P G + K D Q
Sbjct: 34 ----SSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAAT 89
Query: 398 AITIR-PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
A + + S E + Q LR + +
Sbjct: 90 AKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDT 139
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 68.1 bits (166), Expect = 4e-13
Identities = 13/138 (9%), Positives = 35/138 (25%), Gaps = 1/138 (0%)
Query: 6 AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR 65
G +QALE + +P + D++ + ++++L P
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 66 FAECYGNMANAWKEKGDIDLAIR-YYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
+ + + K + + + M + ++
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122
Query: 125 RQALALNPLLVDAHSNLG 142
Q L ++
Sbjct: 123 LQIEELRQEKGFLANDTS 140
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 67.0 bits (163), Expect = 1e-12
Identities = 19/140 (13%), Positives = 40/140 (28%), Gaps = 2/140 (1%)
Query: 215 ALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAY 273
+ G Q+A+ A++ P +A + G + A Q+I P +L
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67
Query: 274 NNLGNALKDVGRVDEAIQCYNQCLSL-QPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 332
+ L + +K + Q L + N+ M +
Sbjct: 68 SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127
Query: 333 VTTGLSAPFNNLAVIYKQQG 352
+ N+ + +
Sbjct: 128 LRQEKGFLANDTSFSDVRDI 147
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 64.3 bits (156), Expect = 9e-12
Identities = 14/119 (11%), Positives = 36/119 (30%), Gaps = 1/119 (0%)
Query: 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409
+G A+ E ++ P A + G A + +++I + P
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67
Query: 410 ANLASAYKDSGHVEAAIKSYKQ-ALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVE 467
+ L K + + + +L + + + +E + ++E
Sbjct: 68 SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 84.9 bits (208), Expect = 1e-18
Identities = 38/250 (15%), Positives = 74/250 (29%), Gaps = 7/250 (2%)
Query: 209 LGNVYKALGMPQEAIMCYQRAVQTRP-----NAIAFGNLASTYYERGQADMAILYYKQAI 263
L + + + ++ + +R A Y G +A + QA+
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA 323
P E +N LG L G D A + ++ L L P++ A N G A
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124
Query: 324 ASYYKATLAVTTGLSAPFNNLAVIYKQQGN--YADAISCYNEVLRIDPLAADGLVNRGNT 381
A L + ++ + + + E + + +
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN 184
Query: 382 YKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441
E + D ++ ++E + L Y G +++A +K A+
Sbjct: 185 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 244
Query: 442 ATCNLLHTLQ 451
L L
Sbjct: 245 EHRYALLELS 254
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 83.7 bits (205), Expect = 3e-18
Identities = 41/255 (16%), Positives = 79/255 (30%), Gaps = 7/255 (2%)
Query: 38 LLGAIYYQLHDYDMCIARNEEALR----LEPRFAECYGNMANAWKEKGDIDLAIRYYLVA 93
+L ++ +AR E+ L + A+ + G LA + A
Sbjct: 4 VLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQA 63
Query: 94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQE 153
+ +RP+ + ++ L + G + A + L L+P AH N G + G +
Sbjct: 64 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKL 123
Query: 154 AYSCYLEALRIQPT--FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGN 211
A L + P F W LA ++ L+ + E + +
Sbjct: 124 AQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG 183
Query: 212 VYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 270
+ + + + L Y G D A +K A+ +
Sbjct: 184 NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243
Query: 271 EAYNNLGNALKDVGR 285
+ L +G+
Sbjct: 244 VEHRYALLELSLLGQ 258
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 80.6 bits (197), Expect = 2e-17
Identities = 43/254 (16%), Positives = 71/254 (27%), Gaps = 7/254 (2%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYER----NPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
LA + + + L + + R L G +Y L + +AL
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 61 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
+ P E + + + G+ D A + +EL P + A N A GR A
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124
Query: 121 AQCCRQALALNPL--LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 178
+P L + +E + E + G
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN 184
Query: 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAI 237
E + R + L + LG Y +LG A ++ AV N +
Sbjct: 185 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 244
Query: 238 AFGNLASTYYERGQ 251
GQ
Sbjct: 245 EHRYALLELSLLGQ 258
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 72.9 bits (177), Expect = 1e-14
Identities = 41/233 (17%), Positives = 77/233 (33%), Gaps = 7/233 (3%)
Query: 107 LASAYMRKGRLNEAAQCCRQALA----LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162
LA + Q LA + G L + GL A + + +AL
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 163 RIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEA 222
I+P ++ L ++G+ + A + + ++L PT+ A+LN G G + A
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124
Query: 223 IMCYQRAVQTR---PNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 279
Q P + LA + QA + + + +
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN 184
Query: 280 LKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 332
+ + ++ SL + LG Y+ L +A + +K +A
Sbjct: 185 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 67.5 bits (163), Expect = 7e-13
Identities = 32/219 (14%), Positives = 57/219 (26%), Gaps = 2/219 (0%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
+ G A + P + LG Q ++D + L
Sbjct: 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 98
Query: 61 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
L+P + + N A G LA L + PN L A +
Sbjct: 99 ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAK 158
Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQ--GLVQEAYSCYLEALRIQPTFAIAWSNLAGL 178
+ + + L L++ + + + + L
Sbjct: 159 EVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY 218
Query: 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
++ GDL+ A +K AV + LG
Sbjct: 219 YLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLG 257
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 51.0 bits (120), Expect = 2e-07
Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 4/124 (3%)
Query: 344 LAVIYKQQGNYADAISCYNEVLRI----DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI 399
LAV + ++ ++L D A L RG Y +G A D+ +A+
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 400 TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR 459
IRP M E L +G+ +AA +++ L L P + A N L +
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124
Query: 460 DRMF 463
Sbjct: 125 QDDL 128
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 47.1 bits (110), Expect = 4e-06
Identities = 14/116 (12%), Positives = 34/116 (29%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
+ + LA Q K+ L+ ++ + + + + A +
Sbjct: 143 LWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNT 202
Query: 61 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116
L +E + + GD+D A + +A+ + G+
Sbjct: 203 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 41.3 bits (95), Expect = 3e-04
Identities = 33/191 (17%), Positives = 56/191 (29%), Gaps = 4/191 (2%)
Query: 276 LGNALKDVGRVDEAIQCYNQCLS----LQPSHPQALTNLGNIYMEWNMLPAAASYYKATL 331
L L+ + + + Q L+ Q L G +Y + A + + L
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 332 AVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA 391
A+ + FN L + Q GN+ A ++ VL +DP +NRG GR A
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124
Query: 392 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
D + P L A + +A + + +
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN 184
Query: 452 CVCSWEDRDRM 462
Sbjct: 185 ISEQTLMERLK 195
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 40.6 bits (93), Expect = 5e-04
Identities = 25/136 (18%), Positives = 45/136 (33%)
Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
V+Y G A A + +++ L I P + G + G A + + +
Sbjct: 40 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 99
Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRD 460
+ PT AH N A G + A P+ P + L Q + + ++
Sbjct: 100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE 159
Query: 461 RMFSEVEGIIRRQVNM 476
+ E + Q
Sbjct: 160 VLKQHFEKSDKEQWGW 175
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 40.2 bits (92), Expect = 7e-04
Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 3/94 (3%)
Query: 383 KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
+ R+ + A+ Y G A + QAL +RPD PE
Sbjct: 17 VILARMEQILA---SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 73
Query: 443 TCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNM 476
L L +++ F V +
Sbjct: 74 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 107
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 85.7 bits (210), Expect = 2e-18
Identities = 45/372 (12%), Positives = 93/372 (25%), Gaps = 43/372 (11%)
Query: 58 EALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN-----FADAWSNLASAYM 112
+ +R + AE A G+ D A R +A+E P A S L
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62
Query: 113 RKGRLNEAAQCCRQALALN------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
KG L + +Q + + + ++ AQG +Q A+ +A ++
Sbjct: 63 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 122
Query: 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY 226
+ + + RA + ++ +
Sbjct: 123 EQHLEQLPMHEFLV----RIRAQLLWAW---------ARLDEAEASARSGIEVLSSYQPQ 169
Query: 227 QRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 286
Q+ R Q + A + G
Sbjct: 170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 229
Query: 287 DEAIQCYNQCLSLQPSHPQAL----TNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPF- 341
A + ++ L N+ + A + L
Sbjct: 230 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 289
Query: 342 -----NNLAVIYKQQGNYADAISCYNEVLRIDP---------LAADGLVNRGNTYKEIGR 387
L +Y Q G +DA + L++ + + + + ++
Sbjct: 290 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNT 349
Query: 388 VTDAIQDYIRAI 399
+ + Q + I
Sbjct: 350 LPELEQHRAQRI 361
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 85.4 bits (209), Expect = 3e-18
Identities = 32/317 (10%), Positives = 73/317 (23%), Gaps = 42/317 (13%)
Query: 27 ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR-----FAECYGNMANAWKEKG 81
+ + + L + + D + AL P + KG
Sbjct: 6 REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG 65
Query: 82 DIDLAIRYYLVAIELR------PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP--- 132
++ ++ ++ + + +G L A + +A L
Sbjct: 66 ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 125
Query: 133 -----LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM------- 180
+ L+ A + EA + + + ++ +
Sbjct: 126 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 185
Query: 181 -----ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
LNR +A ++ G A + +
Sbjct: 186 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 245
Query: 236 -----AIAFGNLASTYYERGQADMAILYYKQAI------GCDPRFLEAYNNLGNALKDVG 284
+ N+A G+ + A + ++ L G
Sbjct: 246 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305
Query: 285 RVDEAIQCYNQCLSLQP 301
R +A + L L
Sbjct: 306 RKSDAQRVLLDALKLAN 322
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 83.0 bits (203), Expect = 2e-17
Identities = 41/366 (11%), Positives = 87/366 (23%), Gaps = 72/366 (19%)
Query: 93 AIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP-----LLVDAHSNLGNLMKA 147
I A+ + A + G +EA + + AL P + A S LG ++
Sbjct: 4 DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC 63
Query: 148 QGLVQEAYSCYLEALRI------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 201
+G + + + + ++ + + + G L A + ++A +L
Sbjct: 64 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 123
Query: 202 FPD--------AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQAD 253
+ A EA + ++ + L +
Sbjct: 124 QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 183
Query: 254 MAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 313
+++ A
Sbjct: 184 ARGDLDNAR---------------------SQLNRLENLLGNGKYHSDWISNANKVRVIY 222
Query: 314 YMEWNMLPAAASYYKATLAVTTG----LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 369
+ AAA++ + T L + N+A G + A E+
Sbjct: 223 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 282
Query: 370 LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429
++ + + L Y +G A +
Sbjct: 283 ----------------------------SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 314
Query: 430 KQALLL 435
AL L
Sbjct: 315 LDALKL 320
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 64.2 bits (154), Expect = 2e-11
Identities = 34/308 (11%), Positives = 68/308 (22%), Gaps = 46/308 (14%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLL------LGAIYYQLHDYDMCIAR 55
L ++ G ++L + I +
Sbjct: 54 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET 113
Query: 56 NEEALRLEPRF--------AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL 107
E+A +L A +D A IE+ ++
Sbjct: 114 QEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173
Query: 108 ASAYM------------RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAY 155
A + + +LN + + +A+ + G A
Sbjct: 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 233
Query: 156 SCYLEALRIQ----PTFAIAWSNLAGLFMESGDLNRALQYYKEAV------KLKPTFPDA 205
+ + + W N+A + G+ A +E +L
Sbjct: 234 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 293
Query: 206 YLNLGNVYKALGMPQEAIMCYQRAVQTRPN----------AIAFGNLASTYYERGQADMA 255
L L +Y G +A A++ A +
Sbjct: 294 LLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPEL 353
Query: 256 ILYYKQAI 263
+ Q I
Sbjct: 354 EQHRAQRI 361
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 81.9 bits (201), Expect = 3e-18
Identities = 24/197 (12%), Positives = 55/197 (27%), Gaps = 11/197 (5%)
Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
A + + EAA C +A+ NPL+ ++N ++A +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 161 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 220
AL + A L +E + A+ + A L + + + +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123
Query: 221 EAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNAL 280
+R + + ++ + R E + + G+
Sbjct: 124 RWNSIEERRIHQES-----------ELHSYLTRLIAAERERELEECQRNHEGHEDDGHIR 172
Query: 281 KDVGRVDEAIQCYNQCL 297
++ Y +
Sbjct: 173 AQQACIEAKHDKYMADM 189
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 80.4 bits (197), Expect = 1e-17
Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 5/171 (2%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
A+ N A Y AI P A ++N A Y++ + +A CR+
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186
AL L+ V AH LG EA + A + + + + L
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI-----PSALR 118
Query: 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI 237
A + +++ + ++ L+ + + QR + +
Sbjct: 119 IAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDG 169
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.7 bits (190), Expect = 8e-17
Identities = 23/183 (12%), Positives = 50/183 (27%), Gaps = 5/183 (2%)
Query: 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVA 93
L G + Y A A+ P A Y N A + + + A+ A
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQE 153
+EL A L + +EA ++A +L + ++
Sbjct: 65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD-----IPSALRI 119
Query: 154 AYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY 213
A ++ + + + + + + R L+ + + +
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIE 179
Query: 214 KAL 216
Sbjct: 180 AKH 182
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 76.2 bits (186), Expect = 3e-16
Identities = 24/172 (13%), Positives = 50/172 (29%), Gaps = 5/172 (2%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
+ GN L + EA CY + ++ P TN Y++ A + +
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
L + L + +Y +AI+ + + + I
Sbjct: 65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI----- 119
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
A + +I R E+ + + E ++ ++ D
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHI 171
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.0 bits (183), Expect = 8e-16
Identities = 25/195 (12%), Positives = 52/195 (26%), Gaps = 5/195 (2%)
Query: 234 PNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293
P+A + + + A Y +AI +P Y N + + ++A+
Sbjct: 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61
Query: 294 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 353
+ L L +A LG +E A + + ++ A L
Sbjct: 62 RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL-----AKEQRLNFGDDIPSA 116
Query: 354 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 413
A + + + ++ T +++ R A A
Sbjct: 117 LRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQA 176
Query: 414 SAYKDSGHVEAAIKS 428
A +
Sbjct: 177 CIEAKHDKYMADMDE 191
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 69.2 bits (168), Expect = 7e-14
Identities = 19/182 (10%), Positives = 49/182 (26%), Gaps = 5/182 (2%)
Query: 8 QMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA 67
+++ Y +A RNPL Y ++ + +A AL L+ +
Sbjct: 13 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72
Query: 68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127
+ + + E D AI A L + + + +R + + +
Sbjct: 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK-----KKRWNS 127
Query: 128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187
+ + ++ + + + A + +
Sbjct: 128 IEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMA 187
Query: 188 AL 189
+
Sbjct: 188 DM 189
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.3 bits (163), Expect = 3e-13
Identities = 24/191 (12%), Positives = 49/191 (25%), Gaps = 6/191 (3%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
A A Y A+ P Y N Y + P++A+ +R
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 229 AVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 287
A++ + A L E D AI ++A + + + +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA-----LR 118
Query: 288 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 347
A + + + H ++ + + + A I
Sbjct: 119 IAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACI 178
Query: 348 YKQQGNYADAI 358
+ Y +
Sbjct: 179 EAKHDKYMADM 189
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.5 bits (161), Expect = 5e-13
Identities = 21/107 (19%), Positives = 40/107 (37%)
Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
Y +A +CY + +PL A NR Y ++ + A+ D RA+
Sbjct: 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66
Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL 447
+ +AH L + + AI + ++A L + + +
Sbjct: 67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.3 bits (106), Expect = 7e-06
Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
+ A K +QAL E + LG ++ YD IA + A
Sbjct: 41 YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
L +G+ + + +A + +IE R ++ + +
Sbjct: 101 LAKEQRLNFGDDIPSA-----LRIAKKKRWNSIEERRIHQESELHSYLTRLIAAEREREL 155
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR 163
+ C++ + H + G++ Q ++ + Y+ +
Sbjct: 156 EECQRNH-------EGHEDDGHIRAQQACIEAKHDKYMADMD 190
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.2 bits (85), Expect = 0.004
Identities = 7/58 (12%), Positives = 12/58 (20%)
Query: 406 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMF 463
A+ + A Y +A+ P N + E
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.0 bits (199), Expect = 5e-18
Identities = 26/199 (13%), Positives = 55/199 (27%), Gaps = 32/199 (16%)
Query: 72 NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
N +K D A+ + ++ + N+ Y + EA + +++ +
Sbjct: 10 NEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 66
Query: 132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 191
L A+ G L A EAL N+ + Y
Sbjct: 67 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG------------------NQLIDY 108
Query: 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQ 251
++ K + N+ +Y ++A A + +
Sbjct: 109 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-----------RHSK 157
Query: 252 ADMAILYYKQAIGCDPRFL 270
D A+ + +P +
Sbjct: 158 IDKAMECVWKQKLYEPVVI 176
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.8 bits (188), Expect = 2e-16
Identities = 28/202 (13%), Positives = 56/202 (27%), Gaps = 33/202 (16%)
Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
AI+ N ++ A+ + N+G + + EA + + +
Sbjct: 5 AISLWNEGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTR 61
Query: 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 355
++ A G +Y + A K L N + YK G
Sbjct: 62 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR------GNQLIDYKILG--- 112
Query: 356 DAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA 415
L+ A + L N Y + A + A +++
Sbjct: 113 ---------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE----------- 152
Query: 416 YKDSGHVEAAIKSYKQALLLRP 437
++ A++ + L P
Sbjct: 153 -PRHSKIDKAMECVWKQKLYEP 173
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.6 bits (177), Expect = 4e-15
Identities = 27/211 (12%), Positives = 54/211 (25%), Gaps = 40/211 (18%)
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQA 252
EA+ L N G + + A+ + P++ N+ Y
Sbjct: 3 VEAISLW--------NEGVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNM 52
Query: 253 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN 312
A + ++I D AY G + D AI+ + L +
Sbjct: 53 TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ-------- 104
Query: 313 IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAA 372
Y L N+A +Y ++ + A +
Sbjct: 105 ----------LIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 154
Query: 373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403
+++ A++ + P
Sbjct: 155 HSKIDK------------AMECVWKQKLYEP 173
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (171), Expect = 2e-14
Identities = 25/204 (12%), Positives = 65/204 (31%), Gaps = 33/204 (16%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
G + D+ + + ++ + N+ + ++ A + + +I
Sbjct: 11 EGVLAADKKDWKGAL---DAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCY 158
+ A A+ Y + + + A + ++AL GN +
Sbjct: 68 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR---------GNQLIDY---------K 109
Query: 159 LEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 218
+ L+ + N+A ++ + + +A + A +K + ++
Sbjct: 110 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID---------- 159
Query: 219 PQEAIMCYQRAVQTRPNAIAFGNL 242
+A+ C + P I G L
Sbjct: 160 --KAMECVWKQKLYEPVVIPVGRL 181
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (171), Expect = 2e-14
Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 21/164 (12%)
Query: 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
N G D A+ ++ +Q H + N+G +Y + A + ++
Sbjct: 10 NEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 66
Query: 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQD 394
L+ + ++Y Q Y AI E L RGN I
Sbjct: 67 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ---------LRGN---------QLIDY 108
Query: 395 YIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
I + + E N+A Y + A + A ++ +
Sbjct: 109 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.5 bits (156), Expect = 3e-12
Identities = 24/210 (11%), Positives = 60/210 (28%), Gaps = 37/210 (17%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
+K AL+ ++V + + +G +Y L + ++ +
Sbjct: 11 EGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRDK 67
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
A Y + + DLAI+ A+ N Y G
Sbjct: 68 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG------NQLIDYKILG--------- 112
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184
L + N+ + + ++A A ++
Sbjct: 113 ---LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE------------PRHSK 157
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214
+++A++ + +P + +G +++
Sbjct: 158 IDKAMECVWKQKLYEPV----VIPVGRLFR 183
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (135), Expect = 1e-09
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 402
N V+ + ++ A+ ++ + + N G Y + +T+A + + R+I
Sbjct: 10 NEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 66
Query: 403 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440
+A A+ Y + + AIK K+AL+
Sbjct: 67 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 104
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.6 bits (200), Expect = 2e-17
Identities = 30/272 (11%), Positives = 74/272 (27%), Gaps = 42/272 (15%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFADAWSNLASAYMRKGRLNEA 120
A+ A ++ + +++LA +L A + + + + G A
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
A + +G + + E I ++ +
Sbjct: 97 VDSLENA--------------IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142
Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----- 235
+G+ Q ++ ++ G EA Y + +++
Sbjct: 143 LAGEWYAQDQS-------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195
Query: 236 ---AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEA-----YNNLGNAL--KDVGR 285
F A A ++ DP F ++ +L +A+ D +
Sbjct: 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255
Query: 286 VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW 317
+ E + ++ + L L + +
Sbjct: 256 LSEHCKEFDNFMRLDKWKITILNKIKESIQQQ 287
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.6 bits (200), Expect = 2e-17
Identities = 31/248 (12%), Positives = 66/248 (26%), Gaps = 28/248 (11%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 263
D + +Y+ A + +A + A +TY E +
Sbjct: 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVE-----AYKCFKSG-- 90
Query: 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA 323
G +++ N G+ + + + + Y
Sbjct: 91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL------- 143
Query: 324 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL-------AADGLV 376
A + A + F A + G Y +A Y+++++ D +
Sbjct: 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203
Query: 377 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH-----ANLASAY--KDSGHVEAAIKSY 429
+G A + + P A++ +L A DS + K +
Sbjct: 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263
Query: 430 KQALLLRP 437
+ L
Sbjct: 264 DNFMRLDK 271
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.8 bits (167), Expect = 3e-13
Identities = 28/250 (11%), Positives = 66/250 (26%), Gaps = 34/250 (13%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKL------KPTFPDAYLNLGNVYKALGMPQEA 222
A A ++ +LN A + +A + + Y+ +K+ G A
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 223 IMCYQRAVQTRPN--------------AIAFGNLASTYYERGQADMAILYYKQAIGCDPR 268
+ + A+Q + N Y + +
Sbjct: 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156
Query: 269 FLEAYNNLGNALKDVGRVDEAIQCYNQCL-------SLQPSHPQALTNLGNIYMEWNMLP 321
+ + + G+ EA Y++ + Q S G +
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV 216
Query: 322 AAASYYKATLAVTTGLSAPF-----NNLAVIYKQQ--GNYADAISCYNEVLRIDPLAADG 374
AAA + + + +L + ++ ++ +R+D
Sbjct: 217 AAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276
Query: 375 LVNRGNTYKE 384
L + ++
Sbjct: 277 LNKIKESIQQ 286
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.1 bits (152), Expect = 3e-11
Identities = 15/190 (7%), Positives = 37/190 (19%), Gaps = 27/190 (14%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ------ALTNLGNIYMEWNMLPAAA 324
+ + ++ A + + Q + A
Sbjct: 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97
Query: 325 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 384
N I+ +G + + E+ I N + Y +
Sbjct: 98 DSL--------------ENAIQIFTHRGQFRRGANFKFELGEILE-------NDLHDYAK 136
Query: 385 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATC 444
+ ++ + A G A Y + + +
Sbjct: 137 AIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196
Query: 445 NLLHTLQCVC 454
+L
Sbjct: 197 SLKDYFLKKG 206
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.3 bits (171), Expect = 5e-15
Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 17/129 (13%)
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
K+A+K K LGN A+ Y +A + P N N A+ Y+E+G
Sbjct: 2 KQALKEK--------ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD 53
Query: 252 ADMAILYYKQAIGCDPRFLEAY-------NNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 304
+ ++AI E Y +GN+ + +AI YN+ L+ P
Sbjct: 54 YNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TP 112
Query: 305 QALTNLGNI 313
L
Sbjct: 113 DVLKKCQQA 121
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.6 bits (151), Expect = 2e-12
Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 137 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAV 196
LGN + A Y +A + PT +N A ++ E GD N+ + ++A+
Sbjct: 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65
Query: 197 KLKPTFPDAY-------LNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL 242
++ + Y +GN Y ++AI Y +++
Sbjct: 66 EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC 118
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.8 bits (149), Expect = 5e-12
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
LGN D A++ Y++ L P++ +TN +Y E +
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64
Query: 331 L-------AVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP 369
+ ++ + + Y ++ Y DAI YN+ L
Sbjct: 65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.4 bits (148), Expect = 7e-12
Identities = 18/123 (14%), Positives = 42/123 (34%), Gaps = 8/123 (6%)
Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
A L + +K + A + +A L+P + +N + +G + +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 161 ALRIQPTFA-------IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY 213
A+ + A++ + + + A+ +Y +++ T PD
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAE 122
Query: 214 KAL 216
K L
Sbjct: 123 KIL 125
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (144), Expect = 2e-11
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 7/105 (6%)
Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
L ++ ++ A+ Y++ +DP + N+ Y E G + +AI
Sbjct: 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66
Query: 401 IRPTMAEAH-------ANLASAYKDSGHVEAAIKSYKQALLLRPD 438
+ E + A + ++Y + AI Y ++L
Sbjct: 67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (141), Expect = 5e-11
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 23/139 (16%)
Query: 16 KQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMAN 75
KQAL+ LG Y+ D+D + ++A L+P N A
Sbjct: 2 KQALKEKE---------------LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAA 46
Query: 76 AWKEKGDIDLAIRYYLVAIELRPNFAD-------AWSNLASAYMRKGRLNEAAQCCRQAL 128
+ EKGD + AIE+ + A++ + ++Y ++ + +A ++L
Sbjct: 47 VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
Query: 129 ALNPLLVDAHSNLGNLMKA 147
A + D K
Sbjct: 107 AEHRTP-DVLKKCQQAEKI 124
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (103), Expect = 7e-06
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 8/116 (6%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPL-------RTDNLLLLGAIYYQLHDYDMCIA 54
L + YK + AL+H + E +P + G + I
Sbjct: 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66
Query: 55 RNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110
E + A+ Y + N++ ++ AI +Y ++ D A
Sbjct: 67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQA 121
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 3e-04
Identities = 14/75 (18%), Positives = 28/75 (37%)
Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
A GN + A++ Y +A + PT N A+ Y + G + ++
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 432 ALLLRPDFPEATCNL 446
A+ + + E +
Sbjct: 64 AIEVGRENREDYRQI 78
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.7 bits (157), Expect = 4e-13
Identities = 11/118 (9%), Positives = 32/118 (27%), Gaps = 6/118 (5%)
Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA---LGMPQEAIMCYQRAV 230
+ + DL + + ++ ++ I+ + +
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 231 QTRPN---AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR 285
LA Y + + A+ Y + + +P+ +A K + +
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.4 bits (143), Expect = 3e-11
Identities = 13/117 (11%), Positives = 33/117 (28%), Gaps = 5/117 (4%)
Query: 106 NLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA---QGLVQEAYSCYLEAL 162
+ + + L + + + A + + +++ E L
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 163 RIQPT--FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
LA + +AL+Y + ++ +P A + KA+
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.6 bits (128), Expect = 3e-09
Identities = 9/110 (8%), Positives = 22/110 (20%), Gaps = 5/110 (4%)
Query: 72 NMANAWKEKGDIDLAIRYYLVAIELRPNFADA---WSNLASAYMRKGRLNEAAQCCRQAL 128
+ N D+ + + ++ + + + L
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 129 AL--NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176
D L ++A L+ +P A
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.2 bits (127), Expect = 4e-09
Identities = 12/119 (10%), Positives = 27/119 (22%), Gaps = 5/119 (4%)
Query: 274 NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 333
+ N L V + + + + + + +
Sbjct: 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL 62
Query: 334 TTGLSAPFN-----NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR 387
S LAV + Y A+ +L+ +P K + +
Sbjct: 63 LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (126), Expect = 6e-09
Identities = 10/107 (9%), Positives = 20/107 (18%), Gaps = 5/107 (4%)
Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD---AIQDYIR 397
+ + + ++ D I
Sbjct: 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEE 61
Query: 398 AITIRPT--MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
+ + LA E A+K + L P +A
Sbjct: 62 LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 108
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (124), Expect = 1e-08
Identities = 10/121 (8%), Positives = 29/121 (23%), Gaps = 6/121 (4%)
Query: 2 HM-ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMC-----IAR 55
HM A+ +++ + + S + + D +
Sbjct: 1 HMEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLE 60
Query: 56 NEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115
+ + +A + + A++Y ++ P A
Sbjct: 61 ELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120
Query: 116 R 116
+
Sbjct: 121 K 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (124), Expect = 1e-08
Identities = 15/98 (15%), Positives = 21/98 (21%), Gaps = 5/98 (5%)
Query: 57 EEALRLEPRFAE---CYGNMANAWKEKGDIDLAIRYYLVAIELRPN--FADAWSNLASAY 111
+ Y + DI I + D LA
Sbjct: 23 QSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82
Query: 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG 149
R +A + R L P A + KA
Sbjct: 83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 63.8 bits (154), Expect = 3e-12
Identities = 19/156 (12%), Positives = 38/156 (24%), Gaps = 19/156 (12%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
A + + G A+ Y + +
Sbjct: 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK-------------------E 55
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186
+ A L+ A NL +A C +AL + + +
Sbjct: 56 SKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFE 115
Query: 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEA 222
A +++ +++ P A L + K E
Sbjct: 116 SAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNER 151
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 60.4 bits (145), Expect = 3e-11
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 16/129 (12%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----------------AIAFGNLASTYY 247
G VY G +A++ Y + V AF NLA Y
Sbjct: 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 75
Query: 248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
+ + A+ +A+G D + G A + + A + + L + P + A
Sbjct: 76 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 135
Query: 308 TNLGNIYME 316
+ +
Sbjct: 136 LQIFMCQKK 144
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 60.4 bits (145), Expect = 4e-11
Identities = 31/161 (19%), Positives = 53/161 (32%), Gaps = 20/161 (12%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
G G+ +A+ Y + +S K +
Sbjct: 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL-------------------SEKES 56
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
A + L A F NLA+ Y + Y A+ C ++ L +D GL RG +
Sbjct: 57 KASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFES 116
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSG-HVEAAIKSYK 430
A D+ + + + P A + K + H E ++Y
Sbjct: 117 AKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYA 157
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 57.3 bits (137), Expect = 5e-10
Identities = 20/137 (14%), Positives = 42/137 (30%), Gaps = 16/137 (11%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYY---------------KEAVKLKPTFPDAYLNLGNVY 213
A ++ + G +A+ Y KE+ + A+LNL Y
Sbjct: 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 74
Query: 214 KALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEA 272
L +A+ C +A+ + + A +++ + +P+ A
Sbjct: 75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 134
Query: 273 YNNLGNALKDVGRVDEA 289
+ K +E
Sbjct: 135 RLQIFMCQKKAKEHNER 151
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 54.6 bits (130), Expect = 4e-09
Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 15/128 (11%)
Query: 10 YKSGSYKQALEHSNSVY---------------ERNPLRTDNLLLLGAIYYQLHDYDMCIA 54
+K G Y QA+ + L L Y +L +Y +
Sbjct: 26 FKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 85
Query: 55 RNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRK 114
++AL L+ + A + + A + +E+ P A + +
Sbjct: 86 CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145
Query: 115 GRLNEAAQ 122
NE +
Sbjct: 146 KEHNERDR 153
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 54.2 bits (129), Expect = 4e-09
Identities = 18/130 (13%), Positives = 35/130 (26%), Gaps = 15/130 (11%)
Query: 40 GAIYYQLHDYDMCIA---------------RNEEALRLEPRFAECYGNMANAWKEKGDID 84
G +Y++ Y + +E+ E + N+A + + +
Sbjct: 22 GTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 81
Query: 85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL 144
A+ A+ L A + A + L +NP A +
Sbjct: 82 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC 141
Query: 145 MKAQGLVQEA 154
K E
Sbjct: 142 QKKAKEHNER 151
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 53.0 bits (126), Expect = 1e-08
Identities = 21/144 (14%), Positives = 45/144 (31%), Gaps = 20/144 (13%)
Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRI---------------DPLAADGLVNRGNTYKEI 385
+Y + G Y A+ Y +++ + +N Y ++
Sbjct: 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 77
Query: 386 GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCN 445
T A++ +A+ + + A E+A +++ L + P A
Sbjct: 78 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 137
Query: 446 LLHTLQCVCSWEDRDR-----MFS 464
+ + +RDR MF
Sbjct: 138 IFMCQKKAKEHNERDRRTYANMFK 161
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 46.1 bits (108), Expect = 4e-06
Identities = 17/158 (10%), Positives = 49/158 (31%), Gaps = 20/158 (12%)
Query: 97 RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYS 156
+ A + Y + G+ +A + ++ +
Sbjct: 11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK---------------- 54
Query: 157 CYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 216
E+ + A+ NLA +++ + +A++ +A+ L G +
Sbjct: 55 ---ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM 111
Query: 217 GMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQAD 253
+ A +++ ++ P N A + + + +
Sbjct: 112 NEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHN 149
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.4 bits (150), Expect = 7e-12
Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 22/175 (12%)
Query: 48 DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL 107
D D+ + ++ L + +E N+ N + + + ++AI+ Y
Sbjct: 12 DADVDLKDVDKILLI----SEDLKNIGNTFFKSQNWEMAIKKYTKV-------------- 53
Query: 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
+R + AA L P+ + N+G Q A LEAL I P+
Sbjct: 54 ----LRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 109
Query: 168 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEA 222
A A + + ++AL K+A ++ P L V + + ++
Sbjct: 110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.3 bits (142), Expect = 8e-11
Identities = 18/150 (12%), Positives = 45/150 (30%), Gaps = 21/150 (14%)
Query: 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP--------- 234
D + L+ + + + + N+GN + + AI Y + ++
Sbjct: 12 DADVDLKDVDKILLI----SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDA 67
Query: 235 --------NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 286
N+ + + A+ +A+ DP +A + +
Sbjct: 68 DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY 127
Query: 287 DEAIQCYNQCLSLQPSHPQALTNLGNIYME 316
D+A+ + + P L + +
Sbjct: 128 DQALADLKKAQEIAPEDKAIQAELLKVKQK 157
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.1 bits (131), Expect = 2e-09
Identities = 29/178 (16%), Positives = 53/178 (29%), Gaps = 22/178 (12%)
Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311
AD+ + + + E N+GN + AI+ Y + L A +
Sbjct: 13 ADVDLKDVDKIL----LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDAD 68
Query: 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371
++ L N+ + ++ A+ E L IDP
Sbjct: 69 GAKLQPVALSC------------------VLNIGACKLKMSDWQGAVDSCLEALEIDPSN 110
Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429
L R ++ + A+ D +A I P A L + + K+
Sbjct: 111 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 168
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.9 bits (128), Expect = 6e-09
Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 19/157 (12%)
Query: 134 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK 193
+ + N+GN + A Y + LR +RA
Sbjct: 26 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG------------------SRAAAEDA 67
Query: 194 EAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFG-NLASTYYERGQA 252
+ KL+P LN+G + Q A+ A++ P+ A + +
Sbjct: 68 DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY 127
Query: 253 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEA 289
D A+ K+A P L + + +
Sbjct: 128 DQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.9 bits (128), Expect = 6e-09
Identities = 21/156 (13%), Positives = 57/156 (36%), Gaps = 16/156 (10%)
Query: 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEA--------------- 59
+ + + ++ L +++L +G +++ +++M I + +
Sbjct: 9 FPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDAD 68
Query: 60 -LRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118
+L+P C N+ + D A+ L A+E+ P+ A A + +
Sbjct: 69 GAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYD 128
Query: 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154
+A ++A + P + L + + ++
Sbjct: 129 QALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.2 bits (126), Expect = 1e-08
Identities = 23/137 (16%), Positives = 53/137 (38%), Gaps = 16/137 (11%)
Query: 341 FNNLAVIYKQQGNYADAISCYNE----------------VLRIDPLAADGLVNRGNTYKE 384
N+ + + N+ AI Y + ++ P+A ++N G +
Sbjct: 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK 89
Query: 385 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATC 444
+ A+ + A+ I P+ +A A ++ + A+ K+A + P+
Sbjct: 90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 149
Query: 445 NLLHTLQCVCSWEDRDR 461
LL Q + + +D+++
Sbjct: 150 ELLKVKQKIKAQKDKEK 166
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.3 bits (116), Expect = 2e-07
Identities = 18/114 (15%), Positives = 40/114 (35%)
Query: 7 HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF 66
++ + +A + P+ +L +GA ++ D+ + EAL ++P
Sbjct: 51 TKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN 110
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
+ A W+ + D A+ A E+ P + L + +
Sbjct: 111 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.7 bits (104), Expect = 1e-05
Identities = 19/171 (11%), Positives = 53/171 (30%), Gaps = 23/171 (13%)
Query: 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNL 141
D D+ ++ + + ++ N+ + + + A + +
Sbjct: 12 DADVDLKDVDKILLI----SEDLKNIGNTFFKSQNWEMAIKKYTKV-------------- 53
Query: 142 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 201
A + + ++QP N+ ++ D A+ EA+++ P+
Sbjct: 54 ----LRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 109
Query: 202 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQ 251
A ++ L +A+ ++A + P + L +
Sbjct: 110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 160
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.7 bits (143), Expect = 6e-11
Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 2/141 (1%)
Query: 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYL 91
R + L Y++ DY+ I +A+ L P A YGN + A+ A+
Sbjct: 9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDAT 68
Query: 92 VAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA--QG 149
AIEL + + A++ M G+ A + + + P DA K Q
Sbjct: 69 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQK 128
Query: 150 LVQEAYSCYLEALRIQPTFAI 170
+ A + + + I
Sbjct: 129 AFERAIAGDEHKRSVVDSLDI 149
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.8 bits (138), Expect = 3e-10
Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 2/131 (1%)
Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
A+ A+ Y + A + QA+ LNP + N A
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 161 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP- 219
A+ + + + A M G AL+ Y+ VK+KP DA + K +
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129
Query: 220 -QEAIMCYQRA 229
+ AI +
Sbjct: 130 FERAIAGDEHK 140
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (131), Expect = 2e-09
Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 2/132 (1%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
A+ +K+ Y+ A++ + E NP Y + Y + A+ L+
Sbjct: 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK 75
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA--YMRKGRLNEAAQ 122
++ + Y A + G A+R Y ++++P+ DA +++ A
Sbjct: 76 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135
Query: 123 CCRQALALNPLL 134
++ L
Sbjct: 136 GDEHKRSVVDSL 147
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (122), Expect = 3e-08
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 1/112 (0%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 262
+ N Y + AI Y +A++ P NAI +GN + Y A+ +A
Sbjct: 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70
Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314
I D ++++ Y + +G+ A++ Y + ++P A
Sbjct: 71 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (122), Expect = 3e-08
Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 4/141 (2%)
Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
+ N + A Y +A+ + P+ AI + N + ++ + AL A
Sbjct: 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70
Query: 196 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 255
++L + Y ALG + A+ Y+ V+ +P+ A Y+ +
Sbjct: 71 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD----AKMKYQECNKIVK 126
Query: 256 ILYYKQAIGCDPRFLEAYNNL 276
+++AI D ++L
Sbjct: 127 QKAFERAIAGDEHKRSVVDSL 147
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (122), Expect = 3e-08
Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 2/149 (1%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
AE AN + + D + AI++Y AIEL P+ A + N + AY+R A +
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL--FMESGD 184
A+ L+ + + A G + A Y ++++P A ++
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129
Query: 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVY 213
RA+ + + + + + + Y
Sbjct: 130 FERAIAGDEHKRSVVDSLDIESMTIEDEY 158
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 6e-08
Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 5/142 (3%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
E N + AI+ Y+Q + L PS+ N Y+ A
Sbjct: 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
+ + + A G + A+ Y V+++ P D + K + +
Sbjct: 71 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ--- 127
Query: 391 AIQDYIRAITIRPTMAEAHANL 412
+ + RAI +L
Sbjct: 128 --KAFERAIAGDEHKRSVVDSL 147
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 7e-08
Identities = 23/106 (21%), Positives = 44/106 (41%)
Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
A Y + +Y +AI Y++ + ++P A NR Y A+ D RAI
Sbjct: 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 72
Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
+ + + A++ G AA++ Y+ + ++P +A
Sbjct: 73 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 118
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 6e-07
Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 3/137 (2%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
A A + ++ D A+++Y +A++L P+ Y N Y A+ R
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 229 AVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV--GR 285
A++ + A++ G+ A+ Y+ + P +A K V
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129
Query: 286 VDEAIQCYNQCLSLQPS 302
+ AI S+ S
Sbjct: 130 FERAIAGDEHKRSVVDS 146
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (111), Expect = 1e-06
Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 2/133 (1%)
Query: 305 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 364
+ L N Y + A +Y + + + + N ++ Y + Y A+
Sbjct: 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70
Query: 365 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK--DSGHV 422
+ +D G R + +G+ A++DY + ++P +A K
Sbjct: 71 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 130
Query: 423 EAAIKSYKQALLL 435
E AI + +
Sbjct: 131 ERAIAGDEHKRSV 143
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 55.4 bits (132), Expect = 1e-09
Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 18/147 (12%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
GN ++EAI Y + L + + + +
Sbjct: 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC-------- 69
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
NLA Y + +Y AI ++VL+ID L G G + +
Sbjct: 70 ----------NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEE 119
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYK 417
A ++ +A ++ P + +
Sbjct: 120 AKENLYKAASLNPNNLDIRNSYELCVN 146
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 55.0 bits (131), Expect = 2e-09
Identities = 24/151 (15%), Positives = 42/151 (27%), Gaps = 18/151 (11%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
A N + +K +I+ AI Y A++ + + +
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD---------------- 60
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186
+ + + NL +A + L+I A L M G L
Sbjct: 61 --KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLE 118
Query: 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
A + +A L P D + L
Sbjct: 119 EAKENLYKAASLNPNNLDIRNSYELCVNKLK 149
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 54.2 bits (129), Expect = 4e-09
Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 25/142 (17%)
Query: 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---------------- 235
+ A +K GN + EAI+ Y+ A+ +
Sbjct: 14 VQSAFDIK--------EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 65
Query: 236 -AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
NLA+ Y + AI + + + D ++A LG A G ++EA +
Sbjct: 66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 125
Query: 295 QCLSLQPSHPQALTNLGNIYME 316
+ SL P++ + +
Sbjct: 126 KAASLNPNNLDIRNSYELCVNK 147
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 51.5 bits (122), Expect = 3e-08
Identities = 23/134 (17%), Positives = 39/134 (29%), Gaps = 17/134 (12%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKE----------------AVKLKPTFPDAYLNLGNV 212
A F + ++N A+ YKE K K LNL
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 213 YKALGMPQEAIMCYQRAVQTRPNAIAFGN-LASTYYERGQADMAILYYKQAIGCDPRFLE 271
Y +AI + ++ N + L G + A +A +P L+
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136
Query: 272 AYNNLGNALKDVGR 285
N+ + +
Sbjct: 137 IRNSYELCVNKLKE 150
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 50.0 bits (118), Expect = 1e-07
Identities = 17/128 (13%), Positives = 38/128 (29%), Gaps = 16/128 (12%)
Query: 8 QMYKSGSYKQALEH----------------SNSVYERNPLRTDNLLLLGAIYYQLHDYDM 51
+ +K +A+ + ++ + L L Y + DY
Sbjct: 26 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPK 85
Query: 52 CIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111
I + L+++ + + A G ++ A A L PN D ++
Sbjct: 86 AIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145
Query: 112 MRKGRLNE 119
+ +
Sbjct: 146 NKLKEARK 153
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 47.3 bits (111), Expect = 8e-07
Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 16/127 (12%)
Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDP----------------LAADGLVNRGNTYKE 384
+ ++ +AI Y E L + +N Y +
Sbjct: 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 79
Query: 385 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATC 444
AI + + I +A L A G +E A ++ +A L P+ +
Sbjct: 80 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 139
Query: 445 NLLHTLQ 451
+ +
Sbjct: 140 SYELCVN 146
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 43.5 bits (101), Expect = 2e-05
Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 16/129 (12%)
Query: 34 DNLLLLGAIYYQLHDYD----------------MCIARNEEALRLEPRFAECYGNMANAW 77
++ G +++ ++ + + + C N+A +
Sbjct: 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCY 77
Query: 78 KEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDA 137
+ D AI + +++ N A L A M G L EA + +A +LNP +D
Sbjct: 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 137
Query: 138 HSNLGNLMK 146
++ +
Sbjct: 138 RNSYELCVN 146
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 38.5 bits (88), Expect = 0.001
Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 19/159 (11%)
Query: 95 ELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154
E + A + + +K +NEA ++AL E
Sbjct: 11 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH------------------TEE 52
Query: 155 YSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214
+ + + + NLA + ++ D +A+ + + +K+ A LG
Sbjct: 53 WDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM 112
Query: 215 ALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQA 252
G +EA +A P N + + +A
Sbjct: 113 YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 151
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 3e-09
Identities = 23/114 (20%), Positives = 46/114 (40%)
Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
+ + + G +++A QC +A+ L+P +SN +G Q+AY +
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 161 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214
+ ++P + +S A A + Y+E +K + P L N+
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (125), Expect = 6e-09
Identities = 21/111 (18%), Positives = 40/111 (36%)
Query: 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 329
+ GN VG +D+A+QCY++ + L P + +N Y + A
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 330 TLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN 380
T+ + ++ A + + +A Y E L+ + N
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 113
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (124), Expect = 7e-09
Identities = 25/111 (22%), Positives = 45/111 (40%)
Query: 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVA 93
+ L G + + D + EA++L+P Y N + A+ +KGD A
Sbjct: 4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 63
Query: 94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL 144
++L+P++ +S A+A R EA + + L L N+
Sbjct: 64 VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 5e-08
Identities = 24/106 (22%), Positives = 46/106 (43%)
Query: 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400
GN DA+ CY+E +++DP NR Y + G A +D + +
Sbjct: 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 65
Query: 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
++P + ++ A+A + E A ++Y++ L + P+ L
Sbjct: 66 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 111
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 3e-07
Identities = 19/109 (17%), Positives = 37/109 (33%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
++ G+ AL+ + + +P A Y + DY + + L+P
Sbjct: 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113
+ + Y A A + + A R Y ++ N L + R
Sbjct: 69 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 117
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 2e-06
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 1/107 (0%)
Query: 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233
+ G+++ ALQ Y EA+KL P Y N Y G Q+A + V +
Sbjct: 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 67
Query: 234 PNAIAFGN-LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 279
P+ + A+ + + A Y++ + + + L N
Sbjct: 68 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 7e-06
Identities = 26/107 (24%), Positives = 46/107 (42%)
Query: 72 NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
N G+ID A++ Y AI+L P+ +SN ++AY +KG +A + + + L
Sbjct: 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 67
Query: 132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 178
P +S ++ +EA Y E L+ + L +
Sbjct: 68 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 1e-05
Identities = 25/101 (24%), Positives = 46/101 (45%)
Query: 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 194
V+ GN + G + +A CY EA+++ P + +SN + + + GD +A + +
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 195 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
V LKP + Y + L +EA Y+ ++ N
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 103
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 2e-05
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 34/108 (31%)
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYN-------------------------- 274
+ G D A+ Y +AI DP Y+
Sbjct: 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 67
Query: 275 --------NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314
AL+ + R +EA + Y + L + ++PQ L N+
Sbjct: 68 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 54.9 bits (131), Expect = 4e-09
Identities = 18/131 (13%), Positives = 32/131 (24%), Gaps = 12/131 (9%)
Query: 102 DAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161
A GR +A++ AL V A
Sbjct: 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQF------------VEPFA 59
Query: 162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQE 221
+ +A + A + G + + + P + L Y +
Sbjct: 60 TALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSD 119
Query: 222 AIMCYQRAVQT 232
A+ Y+R T
Sbjct: 120 ALGAYRRVKTT 130
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 50.6 bits (120), Expect = 1e-07
Identities = 18/124 (14%), Positives = 26/124 (20%), Gaps = 11/124 (8%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 263
A G A G ++A A++ + A
Sbjct: 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL-----------RDFQFVEPFAT 60
Query: 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA 323
+ A+ A GR I P T L Y + A
Sbjct: 61 ALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDA 120
Query: 324 ASYY 327
Y
Sbjct: 121 LGAY 124
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.1 bits (134), Expect = 6e-09
Identities = 36/274 (13%), Positives = 70/274 (25%), Gaps = 26/274 (9%)
Query: 170 IAW--SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN--------------LGNVY 213
I W SN ++ R + Y++ + + PD + G++
Sbjct: 15 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMN 74
Query: 214 KALGMPQEAIMCYQRAVQTRP--NAIAFGNLASTYYERGQADMAILYYKQAIG-CDPRFL 270
A EA Y+RA+ T N + + A R + + Y + + D
Sbjct: 75 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT 134
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
Y + + + + + + + + A
Sbjct: 135 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFEL 194
Query: 331 LAVTTGLSAPFNN-LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY----KEI 385
G + + + VL L + + I
Sbjct: 195 GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254
Query: 386 GRVTDAIQDYIRAITIRPTMAEAH--ANLASAYK 417
G + ++ R T E A L YK
Sbjct: 255 GDLASILKVEKRRFTAFREEYEGKETALLVDRYK 288
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (118), Expect = 3e-08
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRL-------EPRFAECYGNMANAWKEKGDI 83
L ++ LG + Y DY E+ALR ++ A ++GD+
Sbjct: 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62
Query: 84 DLAIRYYLVAIELRPNFADAWSNLA 108
D A+ +EL P A NL
Sbjct: 63 DKALLLTKKLLELDPEHQRANGNLK 87
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (113), Expect = 2e-07
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Query: 241 NLASTYYERGQADMAILYYKQAI-------GCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293
L Y L+ +QA+ + + L A+ G +D+A+
Sbjct: 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69
Query: 294 NQCLSLQPSHPQALTNLGNIYME 316
+ L L P H +A NL
Sbjct: 70 KKLLELDPEHQRANGNLKYFEYI 92
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (109), Expect = 5e-07
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 8/89 (8%)
Query: 68 ECYGNMANAWKEKGDIDLAIRYYLVAIEL-------RPNFADAWSNLASAYMRKGRLNEA 120
+ + + + D + A+ + L+ A ++G L++A
Sbjct: 7 DSF-ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKA 65
Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQG 149
++ L L+P A+ NL
Sbjct: 66 LLLTKKLLELDPEHQRANGNLKYFEYIMA 94
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (109), Expect = 6e-07
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-------QPTFAIAWSNLAGLFMESGDL 185
L + LG + + +ALR L+ + GDL
Sbjct: 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62
Query: 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
++AL K+ ++L P A NL +
Sbjct: 63 DKALLLTKKLLELDPEHQRANGNLKYFEYIMA 94
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (107), Expect = 9e-07
Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 7/82 (8%)
Query: 343 NLAVIYKQQGNYADAISCYNEVLRID-------PLAADGLVNRGNTYKEIGRVTDAIQDY 395
L + + +Y + LR L + G + A+
Sbjct: 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69
Query: 396 IRAITIRPTMAEAHANLASAYK 417
+ + + P A+ NL
Sbjct: 70 KKLLELDPEHQRANGNLKYFEY 91
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (98), Expect = 2e-05
Identities = 15/83 (18%), Positives = 22/83 (26%), Gaps = 7/83 (8%)
Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALAL-------NPLLVDAHSNLGNLMKAQGLVQE 153
A+ L + QAL V L + QG + +
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 154 AYSCYLEALRIQPTFAIAWSNLA 176
A + L + P A NL
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLK 87
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (88), Expect = 4e-04
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 10/89 (11%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKL-------KPTFPDAYLNLGNVYKALGMPQE 221
A L + D + ++A++ L G +
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 222 AIMCYQRAVQTRPN-AIAFGNLASTYYER 249
A++ ++ ++ P A GNL Y+E
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLK--YFEY 91
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 7e-04
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 7/82 (8%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYER-------NPLRTDNLLLLGAIYYQLHDYDMCIARNE 57
L Y Y + + L L YQ D D + +
Sbjct: 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTK 70
Query: 58 EALRLEPRFAECYGNMANAWKE 79
+ L L+P GN+
Sbjct: 71 KLLELDPEHQRANGNLKYFEYI 92
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.001
Identities = 14/86 (16%), Positives = 22/86 (25%), Gaps = 7/86 (8%)
Query: 370 LAADGLVNRGNTYKEIGRVTDAIQDY-------IRAITIRPTMAEAHANLASAYKDSGHV 422
L A+ G L+ A G +
Sbjct: 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62
Query: 423 EAAIKSYKQALLLRPDFPEATCNLLH 448
+ A+ K+ L L P+ A NL +
Sbjct: 63 DKALLLTKKLLELDPEHQRANGNLKY 88
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (83), Expect = 0.002
Identities = 13/89 (14%), Positives = 15/89 (16%), Gaps = 7/89 (7%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSL-------QPSHPQALTNLGNIYMEWNMLPAA 323
E LG Q L L L + L A
Sbjct: 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKA 65
Query: 324 ASYYKATLAVTTGLSAPFNNLAVIYKQQG 352
K L + NL
Sbjct: 66 LLLTKKLLELDPEHQRANGNLKYFEYIMA 94
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 1e-07
Identities = 18/156 (11%), Positives = 39/156 (25%), Gaps = 19/156 (12%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
+ + ++G A+ Y + + + +
Sbjct: 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE-------------------E 53
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186
A L + +H NL A +AL + S + D
Sbjct: 54 AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE 113
Query: 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEA 222
A +++ ++L P A L + +
Sbjct: 114 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 3e-07
Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 15/132 (11%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQC---------------LSLQPSHPQALTNLGNIYM 315
G G+ +A+ Y + Q + NL ++
Sbjct: 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 73
Query: 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 375
+ AA L + + + + ++ A + + +VL++ P
Sbjct: 74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 133
Query: 376 VNRGNTYKEIGR 387
+ I R
Sbjct: 134 TQLAVCQQRIRR 145
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 3e-07
Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 16/131 (12%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP----------------NAIAFGNLASTYY 247
G VY G ++A++ Y++ V + NLA +
Sbjct: 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 73
Query: 248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
+ AI +A+ D + + G A V + A + + L L P++ A
Sbjct: 74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 133
Query: 308 TNLGNIYMEWN 318
T L
Sbjct: 134 TQLAVCQQRIR 144
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (111), Expect = 1e-06
Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 16/137 (11%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAV---------------KLKPTFPDAYLNLGNVY 213
+ ++ + G +AL YK+ V K + ++LNL +
Sbjct: 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72
Query: 214 KALGMPQEAIMCYQRAVQTRPNAIAFGN-LASTYYERGQADMAILYYKQAIGCDPRFLEA 272
L AI +A++ N + + ++A +++ + P A
Sbjct: 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132
Query: 273 YNNLGNALKDVGRVDEA 289
L + + R
Sbjct: 133 KTQLAVCQQRIRRQLAR 149
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 7e-06
Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 15/128 (11%)
Query: 10 YKSGSYKQALEH---------------SNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIA 54
+K G YKQAL + + LR + L L + +L + I
Sbjct: 24 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 83
Query: 55 RNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRK 114
+AL L+ + A D +LA + ++L PN A + LA R
Sbjct: 84 SCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143
Query: 115 GRLNEAAQ 122
R +
Sbjct: 144 RRQLAREK 151
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 15/136 (11%)
Query: 341 FNNLAVIYKQQGNYADAISCYN---------------EVLRIDPLAADGLVNRGNTYKEI 385
+Y ++G Y A+ Y E + L +N + ++
Sbjct: 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 75
Query: 386 GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCN 445
+ AI+ +A+ + + + A+ E A +++ L L P+ A
Sbjct: 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 135
Query: 446 LLHTLQCVCSWEDRDR 461
L Q + R++
Sbjct: 136 LAVCQQRIRRQLAREK 151
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 4e-05
Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 15/131 (11%)
Query: 39 LGAIYYQLHDYDMCIA---------------RNEEALRLEPRFAECYGNMANAWKEKGDI 83
G +Y++ Y + NEEA + + + N+A +
Sbjct: 19 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 78
Query: 84 DLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGN 143
AI A+EL N S A++ A ++ L L P A + L
Sbjct: 79 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 138
Query: 144 LMKAQGLVQEA 154
+
Sbjct: 139 CQQRIRRQLAR 149
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.003
Identities = 22/158 (13%), Positives = 51/158 (32%), Gaps = 20/158 (12%)
Query: 97 RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYS 156
+ + + Y ++G+ +A ++ ++ +
Sbjct: 9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE---------------- 52
Query: 157 CYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 216
EA + Q + NLA ++ + A++ +A++L G + A+
Sbjct: 53 ---EAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAV 109
Query: 217 GMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQAD 253
+ A +Q+ +Q P N A LA +
Sbjct: 110 NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 147
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 43.6 bits (101), Expect = 2e-05
Identities = 24/185 (12%), Positives = 52/185 (28%), Gaps = 46/185 (24%)
Query: 204 DAYLNLGNVYKAL--GMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQ 261
AYL L + + L G EA +RA++ + ++
Sbjct: 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHT---------------------MPPEE 46
Query: 262 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP 321
A + L AL + DEA+ ++ L + + G +++
Sbjct: 47 AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA---- 102
Query: 322 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT 381
+ A+ G A+A+ + +V+ + +
Sbjct: 103 -------------------VYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 143
Query: 382 YKEIG 386
+
Sbjct: 144 MEVAI 148
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 43.2 bits (100), Expect = 2e-05
Identities = 21/145 (14%), Positives = 41/145 (28%), Gaps = 25/145 (17%)
Query: 98 PNFADAWSNLASA--YMRKGRLNEAAQCCRQALALNPLLVD------------AHSNLGN 143
A+ L+ A + G +EAA CR+A+ ++ + H+ L
Sbjct: 4 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAE 63
Query: 144 LMKAQGLVQEAYSCYLEALRIQPTFAIAWS-----------NLAGLFMESGDLNRALQYY 192
+ EA +AL + A G A+ +
Sbjct: 64 ALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF 123
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALG 217
K+ V++ + +
Sbjct: 124 KKVVEMIEERKGETPGKERMMEVAI 148
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 43.2 bits (100), Expect = 3e-05
Identities = 18/171 (10%), Positives = 47/171 (27%), Gaps = 35/171 (20%)
Query: 271 EAYNNLGNALKDV--GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYK 328
AY L +A + + G DEA + + + + P + +
Sbjct: 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFC---------- 57
Query: 329 ATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLV-----------N 377
LA ++ +A+ ++ L + +
Sbjct: 58 ------------HAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYS 105
Query: 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS 428
R +GR +A+ ++ + + + + + A + +
Sbjct: 106 RALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQLGA 156
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 40.5 bits (93), Expect = 2e-04
Identities = 20/163 (12%), Positives = 34/163 (20%), Gaps = 29/163 (17%)
Query: 136 DAHSNL--GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK 193
A+ L G EA + A+ I T +
Sbjct: 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAF------------------- 48
Query: 194 EAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAS-----TYYE 248
+ L L EA+ +A+ Y
Sbjct: 49 ---DHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYS 105
Query: 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 291
R A + +A+ + +E R+ E
Sbjct: 106 RALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 148
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 39.3 bits (90), Expect = 5e-04
Identities = 18/138 (13%), Positives = 33/138 (23%), Gaps = 23/138 (16%)
Query: 35 NLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAE------------CYGNMANAWKEKGD 82
L +YD A A+ + C+ +A A
Sbjct: 11 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS 70
Query: 83 IDLAIRYYLVAIELRPNFADAWS-----------NLASAYMRKGRLNEAAQCCRQALALN 131
D A+ A+ + + A A GR EA ++ + +
Sbjct: 71 FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 130
Query: 132 PLLVDAHSNLGNLMKAQG 149
+M+
Sbjct: 131 EERKGETPGKERMMEVAI 148
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 37.9 bits (86), Expect = 0.001
Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 21/139 (15%)
Query: 106 NLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM----------KAQGLVQEAY 155
+ + + R + Q NPL D + G ++ A+ ++QEA
Sbjct: 2 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 61
Query: 156 SCYLEALRIQPTFAIAWSNLAGLFME-----------SGDLNRALQYYKEAVKLKPTFPD 204
+ + EAL I P A + + + + A Q++++AV +P
Sbjct: 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 121
Query: 205 AYLNLGNVYKALGMPQEAI 223
+L KA + EA
Sbjct: 122 YLKSLEMTAKAPQLHAEAY 140
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 37.5 bits (85), Expect = 0.002
Identities = 21/160 (13%), Positives = 42/160 (26%), Gaps = 18/160 (11%)
Query: 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
+ + ++ Q P LT G + +E + + + +
Sbjct: 2 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 61
Query: 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQD 394
T + +A + + + + A Q
Sbjct: 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAF-------------LTPDETEAKHNFDLATQF 108
Query: 395 YIRAITIRPTMAEAHANLASAYKDSG-HVEAAIKSYKQAL 433
+ +A+ +P +L K H EA YKQ L
Sbjct: 109 FQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA----YKQGL 144
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.7 bits (85), Expect = 0.002
Identities = 5/56 (8%), Positives = 13/56 (23%), Gaps = 1/56 (1%)
Query: 78 KEKGDIDLAIRYYLVAIELRP-NFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
+ D L ++ + + L + G + A +
Sbjct: 49 TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 104
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 922 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.92 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.86 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.85 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.84 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.82 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.79 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.78 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.75 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.74 | |
| d2iw1a1 | 370 | Lipopolysaccharide core biosynthesis protein RfaG | 99.73 | |
| d1rzua_ | 477 | Glycogen synthase 1, GlgA {Agrobacterium tumefacie | 99.73 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 99.66 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.54 | |
| d2bfwa1 | 196 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 99.54 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.53 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d2f9fa1 | 166 | First mannosyl transferase WbaZ {Archaeoglobus ful | 99.49 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.47 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.47 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.46 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.45 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.37 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.32 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.31 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.3 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.3 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.28 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.28 | |
| d1uqta_ | 456 | Trehalose-6-phosphate synthase, OtsA {Escherichia | 99.26 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.25 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.23 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.23 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.22 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.22 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.22 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.21 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.2 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.19 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.17 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.17 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.16 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.1 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.84 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.81 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.79 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.76 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.69 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.67 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.46 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.42 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 98.38 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 98.01 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.84 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.82 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 97.79 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.77 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.75 | |
| d1o6ca_ | 377 | UDP-N-acetylglucosamine 2-epimerase {Bacillus subt | 97.63 | |
| d1rrva_ | 401 | TDP-vancosaminyltransferase GftD {Amycolatopsis or | 97.55 | |
| d1iira_ | 401 | UDP-glucosyltransferase GtfB {Amycolatopsis orient | 97.51 | |
| d1pn3a_ | 391 | TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi | 97.47 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.45 | |
| d2c1xa1 | 450 | UDP glucose:flavonoid 3-o-glucosyltransferase {Gra | 97.45 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.4 | |
| d2pq6a1 | 473 | (Iso)flavonoid glycosyltransferase {Medicago trunc | 97.23 | |
| d2vcha1 | 471 | Hydroquinone glucosyltransferase {Thale cress (Ara | 97.11 | |
| d1v4va_ | 373 | UDP-N-acetylglucosamine 2-epimerase {Thermus therm | 96.99 | |
| d2acva1 | 461 | Triterpene UDP-glucosyl transferase UGT71G1 {Medic | 96.38 | |
| d1pswa_ | 348 | ADP-heptose LPS heptosyltransferase II {Escherichi | 95.46 | |
| d1f6da_ | 376 | UDP-N-acetylglucosamine 2-epimerase {Escherichia c | 94.54 | |
| d1k68a_ | 140 | Response regulator for cyanobacterial phytochrome | 86.52 | |
| d2gj4a1 | 824 | Glycogen phosphorylase {Rabbit (Oryctolagus cunicu | 85.62 | |
| d1w25a1 | 139 | Response regulator PleD, receiver domain {Caulobac | 85.41 | |
| d1jbea_ | 128 | CheY protein {Escherichia coli [TaxId: 562]} | 82.64 | |
| d1u11a_ | 159 | N5-CAIR mutase (phosphoribosylaminoimidazole carbo | 82.18 | |
| d1l5wa_ | 796 | Maltodextrin phosphorylase (MALP) {Escherichia col | 81.49 | |
| d1p6qa_ | 129 | CheY protein {Sinorhizobium meliloti, CheY2 [TaxId | 81.32 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-37 Score=338.67 Aligned_cols=386 Identities=37% Similarity=0.609 Sum_probs=273.7
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
++.+|..+++.|+|++|++.|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|
T Consensus 2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc
Confidence 46788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (922)
++++|+..+..+.+.+|................+....+...........+................+....+...+.+.
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHh
Confidence 88888888888888888888888888887777777777777777777777777777777777777777777777777777
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHH
Q 002431 162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240 (922)
Q Consensus 162 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 240 (922)
+...|++..++..++..+...|++++|...++++++.+|++..++..+|.++...|++++|+..++++....+. ...+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 241 (388)
T d1w3ba_ 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred hccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHH
Confidence 77777777777777777777777777777777777777777777777777776666666666666666555444 44444
Q ss_pred hHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCCh
Q 002431 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320 (922)
Q Consensus 241 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 320 (922)
.++.++...|++++|+..|+++++.+|+ ++.++..+|.++...|++
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~~p~----------------------------------~~~~~~~l~~~~~~~~~~ 287 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIELQPH----------------------------------FPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS----------------------------------CHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC----------------------------------CHHHHHHHHHHHHHcCCH
Confidence 4555555555555555555555544444 444444555555555555
Q ss_pred hHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 002431 321 PAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400 (922)
Q Consensus 321 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 400 (922)
++|+..++++....|.+...+..++.++...|++++|++.|+++++.+|+++.++..+|.++...|++++|+..|+++++
T Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555555566666666666666666666666666666666666666666666666666
Q ss_pred hCCCcHHHHHHHHHHHHhcCC
Q 002431 401 IRPTMAEAHANLASAYKDSGH 421 (922)
Q Consensus 401 ~~p~~~~~~~~la~~~~~~g~ 421 (922)
++|+++.++.++|.+|.++||
T Consensus 368 l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 368 ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCTTCHHHHHHHHHHHHHTCC
T ss_pred hCCCCHHHHHHHHHHHHHcCC
Confidence 666666666666666666654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.1e-37 Score=334.93 Aligned_cols=384 Identities=35% Similarity=0.559 Sum_probs=318.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002431 72 NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLV 151 (922)
Q Consensus 72 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 151 (922)
.+|..+++.|++++|++.|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++
T Consensus 4 ~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 35555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002431 152 QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 231 (922)
Q Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 231 (922)
++|+..+..+.+..|................+....+...........+................+....+...+.+.+.
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence 66666666666666666666666666666666666666666666666666666677777777777777777777777777
Q ss_pred hCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhH
Q 002431 232 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310 (922)
Q Consensus 232 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 310 (922)
..|+ ...+..++..+...|++++|...+++++..+|++..++..+|.++...|++++|+..++++....+.....+..+
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 243 (388)
T d1w3ba_ 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHH
Confidence 7776 677777788888888888888888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHH
Q 002431 311 GNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390 (922)
Q Consensus 311 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 390 (922)
|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|++.+++++...|.+...+..++.++...|++++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 323 (388)
T d1w3ba_ 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCC
Q 002431 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCS 455 (922)
Q Consensus 391 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 455 (922)
|++.|+++++.+|+++.++..+|.+|.+.|++++|+..|+++++++|+++.++.+++.++...||
T Consensus 324 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999887765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6.5e-24 Score=225.67 Aligned_cols=238 Identities=18% Similarity=0.236 Sum_probs=158.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 208 NLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 286 (922)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~ 286 (922)
..|..+...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..+.++++.+|++...+..+|.++...|++
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccc
Confidence 4444444444444444444444444444 444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHhhCCCChHH---------------HHhHHHHHHHcCChhHHHHHHHHHHhcCCCC--chhhhhHHHHHH
Q 002431 287 DEAIQCYNQCLSLQPSHPQA---------------LTNLGNIYMEWNMLPAAASYYKATLAVTTGL--SAPFNNLAVIYK 349 (922)
Q Consensus 287 ~~A~~~~~~al~~~p~~~~~---------------~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~ 349 (922)
++|++.+++++...|..... .......+...+.+.+|...|.++++.+|+. +.++..+|.++.
T Consensus 104 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~ 183 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 183 (323)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred cccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 44444444444444433221 1111223345566788888888888888764 456788899999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 002431 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429 (922)
Q Consensus 350 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 429 (922)
..|++++|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++.+|+++.+++.+|.+|.+.|++++|++.|
T Consensus 184 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 263 (323)
T d1fcha_ 184 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 263 (323)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHH
Q 002431 430 KQALLLRPDFPEATCN 445 (922)
Q Consensus 430 ~~al~~~p~~~~~~~~ 445 (922)
+++++++|++..+...
T Consensus 264 ~~al~l~p~~~~~~~~ 279 (323)
T d1fcha_ 264 LEALNMQRKSRGPRGE 279 (323)
T ss_dssp HHHHHHHHTC------
T ss_pred HHHHHhCCcChhhhhh
Confidence 9999998888765543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.7e-23 Score=222.33 Aligned_cols=232 Identities=18% Similarity=0.285 Sum_probs=141.2
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
+.+|..+++.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++...+..+|.+|...|+
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence 45666677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcCCCcHHHH---------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 002431 83 IDLAIRYYLVAIELRPNFADAW---------------SNLASAYMRKGRLNEAAQCCRQALALNPL--LVDAHSNLGNLM 145 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~---------------~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~ 145 (922)
+++|++.+++++...|...... ......+...+.+.+|...|.++++.+|+ ++.++..+|.++
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 7777777777766665532211 01111223334455555555555555544 334455555555
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 002431 146 KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMC 225 (922)
Q Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 225 (922)
...|++++|+..|++++..+|++..+|..+|.++...|++++|++.|+++++.+|+++.++..+|.++...|++++|+..
T Consensus 183 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 262 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 262 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56666666666666665555555555556666666666666666666666555555555555566666666666666666
Q ss_pred HHHHHhhCC
Q 002431 226 YQRAVQTRP 234 (922)
Q Consensus 226 ~~~~~~~~p 234 (922)
|+++++..|
T Consensus 263 ~~~al~l~p 271 (323)
T d1fcha_ 263 FLEALNMQR 271 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhCC
Confidence 655555444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.4e-20 Score=197.12 Aligned_cols=218 Identities=13% Similarity=0.106 Sum_probs=188.1
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002431 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG-DIDLAIRYYLVAIELRPNFADAWSNL 107 (922)
Q Consensus 29 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l 107 (922)
+|+..+++..+|.++.+.+.+++|++.++++++.+|.+..+|+.+|.++...| ++++|+..++++++.+|++..+|..+
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~ 118 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 118 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 45567788888999999999999999999999999999999999999988876 58999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC---
Q 002431 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD--- 184 (922)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--- 184 (922)
|.++...|++++|++.++++++.+|++..+|..+|.++...|++++|+..++++++.+|.+..+|..++.++...+.
T Consensus 119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887766
Q ss_pred ---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---hhHHHhHHHHHH
Q 002431 185 ---LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---AIAFGNLASTYY 247 (922)
Q Consensus 185 ---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~ 247 (922)
+++|++.+.++++.+|++..++..++.++... ..+++.+.++++++..|+ ...+..++.++.
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 57899999999999999999998888876544 457788888888887775 444455555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.8e-20 Score=194.93 Aligned_cols=237 Identities=11% Similarity=0.097 Sum_probs=182.5
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCChHHHHhHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG-RVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 314 (922)
..++..++.++.+.+.+++|++.++++++++|++..+|..+|.++...| ++++|+..++++++.+|++..+|..+|.++
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 5667777778888888888888888888888888888888888887776 478888888888888888888888888888
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCC------H
Q 002431 315 MEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR------V 388 (922)
Q Consensus 315 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------~ 388 (922)
...|++++|+..++++++.+|.+..+|..+|.++...|++++|++.++++++++|.+..+|.++|.++...+. +
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~ 202 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL 202 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhh
Confidence 8888888888888888888888888888888888888888888888888888888888888888888877765 5
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHhhcc--cCChhhHhHHHH
Q 002431 389 TDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP--EATCNLLHTLQC--VCSWEDRDRMFS 464 (922)
Q Consensus 389 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~--~~~~~~a~~~~~ 464 (922)
++|+..+.++++.+|++..+|..++.++...| .+++.+.+++++++.|+.. .+...++..+.. .+..+.+...++
T Consensus 203 ~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ 281 (315)
T d2h6fa1 203 EREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILN 281 (315)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 78888888888888888888888887765544 5778888888888777643 333444444322 244555666667
Q ss_pred HHHHHHHHH
Q 002431 465 EVEGIIRRQ 473 (922)
Q Consensus 465 ~~~~~~~~~ 473 (922)
++.+++...
T Consensus 282 ka~~l~~~l 290 (315)
T d2h6fa1 282 KALELCEIL 290 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=8.2e-21 Score=202.20 Aligned_cols=264 Identities=8% Similarity=-0.013 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHH----------HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--h
Q 002431 152 QEAYSCYLEALRIQPTFAIAWSNLAGLF----------MESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM--P 219 (922)
Q Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~la~~~----------~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~--~ 219 (922)
++|+..++++++.+|++..+|...+.++ ...|++++|+..++++++.+|++..++..++.++...++ +
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~ 125 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccH
Confidence 4455555555555555544444443333 334456778888888888888888888888888777664 6
Q ss_pred HHHHHHHHHHHhhCCC-hhHH-HhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 220 QEAIMCYQRAVQTRPN-AIAF-GNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL 297 (922)
Q Consensus 220 ~~A~~~~~~~~~~~p~-~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 297 (922)
++|+..++++++.+|. ...+ ...+.++...+.+++|+..+++++..+|.+..+|..+|.++...|++++|...+++++
T Consensus 126 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~ 205 (334)
T d1dcea1 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 205 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred HHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 7888888888888776 4443 4566777778888888888888888888888888888888888888888888777777
Q ss_pred hhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 002431 298 SLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVN 377 (922)
Q Consensus 298 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 377 (922)
+..|.....+ ..+...+..+++...+.+++...|.+...+..++.++...+++.+|+..+.++++.+|.+..++..
T Consensus 206 ~~~~~~~~~~----~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 281 (334)
T d1dcea1 206 NVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 281 (334)
T ss_dssp HHHHHHHHHH----HHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhHHHHHHHH----HHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHH
Confidence 7766544333 334556777788888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Q 002431 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419 (922)
Q Consensus 378 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 419 (922)
+|.++...|++++|+++|+++++++|.+...|..|+..+...
T Consensus 282 l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e 323 (334)
T d1dcea1 282 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 323 (334)
T ss_dssp HHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHh
Confidence 888888888888888888888888888888888887776643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.82 E-value=2e-20 Score=199.24 Aligned_cols=265 Identities=9% Similarity=0.015 Sum_probs=170.7
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 47 HDYDMCIARNEEALRLEPRFAECYGNMANAWKEK----------GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116 (922)
Q Consensus 47 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 116 (922)
+..++|++.++++++.+|++..+|..++.++... |++++|+.+++++++.+|++..+|..++.++...++
T Consensus 43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc
Confidence 3347777788888877887777776666554433 336677777777777777777777777766666543
Q ss_pred --HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 117 --LNEAAQCCRQALALNPLLVDAH-SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK 193 (922)
Q Consensus 117 --~~~A~~~~~~~l~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 193 (922)
+++|+..++++++.+|.+..++ ...+.++...+.+++|+..++++++.+|.+..+|..+|.++...|++++|...+.
T Consensus 123 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~ 202 (334)
T d1dcea1 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (334)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred ccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6677777777777777666654 3455666666777777777777777777777777777777777777766666665
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 002431 194 EAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEA 272 (922)
Q Consensus 194 ~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 272 (922)
++++..|.....+ ..+...+..+++...+.+++...|. ...+..++.++...+++.+|+..+.+++..+|.+..+
T Consensus 203 ~~~~~~~~~~~~~----~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 278 (334)
T d1dcea1 203 LPENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLT 278 (334)
T ss_dssp SCHHHHHHHHHHH----HHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhHHhHHHHHHHH----HHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHH
Confidence 5555544433222 2234445555666666666666555 4555566666666666666666666666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 273 YNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 273 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
+..+|.++...|++++|+++|+++++++|.+...|..++..+.
T Consensus 279 ~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 279 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666665555544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=2.2e-18 Score=175.93 Aligned_cols=223 Identities=17% Similarity=0.135 Sum_probs=157.3
Q ss_pred HcCCHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 002431 11 KSGSYKQALEHSNSVYERN----PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLA 86 (922)
Q Consensus 11 ~~g~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 86 (922)
...+++.|+..+++++... +....+++.+|.+|...|++++|+..|+++++.+|+++.+++.+|.++...|++++|
T Consensus 11 ~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A 90 (259)
T d1xnfa_ 11 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 90 (259)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHh
Confidence 3456677888888887653 244668888888999999999999999999988888888888899999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002431 87 IRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166 (922)
Q Consensus 87 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 166 (922)
+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|.+......++..+...+..+.+...........+
T Consensus 91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 91 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 99999998888888888888888888888888888888888888888888877777777777766655555555444443
Q ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002431 167 TFAIAWSNLAGLFME----SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235 (922)
Q Consensus 167 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 235 (922)
.... + .+...+.. .+..+.+...+.......|....+++.+|.++...|++++|++.|++++..+|+
T Consensus 171 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 171 EQWG-W-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp CSTH-H-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred hhhh-h-hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 3321 1 11111111 112233333333333344444556666666666666666666666666666665
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=5.5e-18 Score=172.87 Aligned_cols=223 Identities=17% Similarity=0.092 Sum_probs=169.2
Q ss_pred ChHHHHHHHHHHHhhCCC-----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 218 MPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292 (922)
Q Consensus 218 ~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 292 (922)
+.+.++..+++++...+. ..+++.+|.+|...|++++|+..|++++.++|+++.+|..+|.++...|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 345566666666654321 567788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 002431 293 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAA 372 (922)
Q Consensus 293 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 372 (922)
|+++++.+|+++.++..+|.++...|++++|+..|+++++..|++......++..+...+..+.+...........+...
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW 173 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh
Confidence 88888888888888888888888888888888888888888888888777777777777776666666665555554443
Q ss_pred HHHHHHHHHH----HHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 373 DGLVNRGNTY----KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 373 ~~~~~l~~~~----~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
.. .+...+ ...+..+.+...+.......|....+++.+|.+|...|++++|+..|+++++.+|++-..
T Consensus 174 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 245 (259)
T d1xnfa_ 174 GW--NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 245 (259)
T ss_dssp HH--HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred hh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 21 111111 123345556666666666677778899999999999999999999999999999986433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=4.7e-16 Score=166.44 Aligned_cols=273 Identities=16% Similarity=0.057 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002431 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF-----AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLG 210 (922)
Q Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 210 (922)
+.....+.++...|++++|+..++++++..|.+ ..++..+|.++...|++++|+..++++++..+.....
T Consensus 13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----- 87 (366)
T d1hz4a_ 13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW----- 87 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch-----
Confidence 344445555555555555555555555555443 1234445555555555555555555544432211000
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHH
Q 002431 211 NVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCD--------PRFLEAYNNLGNALK 281 (922)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~ 281 (922)
+. ...+..++..+...|++..+...+.+++... +.....+..+|.++.
T Consensus 88 -----------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 144 (366)
T d1hz4a_ 88 -----------------------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 144 (366)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHH
Confidence 00 2233444445555555555555555444211 111234445566666
Q ss_pred HcCCHHHHHHHHHHHHhhCCCC-----hHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCC-------CchhhhhHHHHHH
Q 002431 282 DVGRVDEAIQCYNQCLSLQPSH-----PQALTNLGNIYMEWNMLPAAASYYKATLAVTTG-------LSAPFNNLAVIYK 349 (922)
Q Consensus 282 ~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~la~~~~ 349 (922)
..|+++.+...+.++....+.. ...+...+..+...+++.++...+.++...... ....+..++..+.
T Consensus 145 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T d1hz4a_ 145 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 224 (366)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 6666666666666665554332 234445555566666666666666655544322 1233555667777
Q ss_pred HcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHhc
Q 002431 350 QQGNYADAISCYNEVLRIDPLA----ADGLVNRGNTYKEIGRVTDAIQDYIRAITI------RPTMAEAHANLASAYKDS 419 (922)
Q Consensus 350 ~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~ 419 (922)
..|++++|...++++++..+.+ ...+..+|.++...|++++|...+++++.. .|....++..+|.+|...
T Consensus 225 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 304 (366)
T d1hz4a_ 225 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 304 (366)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHC
Confidence 7777777777777777665533 345666777777788888888777777643 244456777788888888
Q ss_pred CCHHHHHHHHHHHHhcC
Q 002431 420 GHVEAAIKSYKQALLLR 436 (922)
Q Consensus 420 g~~~~A~~~~~~al~~~ 436 (922)
|++++|.+.+++++++.
T Consensus 305 g~~~~A~~~l~~Al~l~ 321 (366)
T d1hz4a_ 305 GRKSDAQRVLLDALKLA 321 (366)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 88888888888887764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=5.8e-16 Score=165.71 Aligned_cols=268 Identities=13% Similarity=0.037 Sum_probs=184.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------c
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF-----AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN------F 100 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~ 100 (922)
+++.....|.++...|++++|+..++++++..|.+ ..++..+|.++...|++++|+..|+++++..+. .
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 45666777888888888888888888888877765 346777788888888888888888887765322 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----
Q 002431 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNP--------LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT----- 167 (922)
Q Consensus 101 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 167 (922)
..++..++..+...|++..|...+.+++...+ .....+..+|.++...|+++.+...+.++....+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 170 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh
Confidence 34566777778888888888888877765421 12235566777777788888888877777765432
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----
Q 002431 168 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT-------FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----- 235 (922)
Q Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----- 235 (922)
...++...+..+...+++.++...+.++...... ...++..++.++...|++++|...+++++...+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 250 (366)
T d1hz4a_ 171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 250 (366)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH
Confidence 2345566677777777777777777776554322 1234566677777777777777777777665443
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIG------CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 299 (922)
...+..++.++...|++++|...+++++. ..|....++..+|.++...|++++|.+.+++++++
T Consensus 251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34455677777777777777777777662 23444566777777777777777777777777665
|
| >d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Lipopolysaccharide core biosynthesis protein RfaG species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=6.3e-19 Score=190.46 Aligned_cols=178 Identities=16% Similarity=0.103 Sum_probs=142.3
Q ss_pred CcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCc
Q 002431 703 KRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK 780 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~ 780 (922)
.|..+|++++.++++.++|+ .|+.+.+++++.++.++.|+..++++|+++. .+.+++.+++.|+ .++|.|.|..
T Consensus 185 ~r~~~~~~~~~~~i~~~gr~~~~Kg~~~li~a~~~l~~~~~~~~~~ii~g~~~-~~~~~~~~~~~~~-~~~v~~~g~~-- 260 (370)
T d2iw1a1 185 YRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDK-PRKFEALAEKLGV-RSNVHFFSGR-- 260 (370)
T ss_dssp HHHHTTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSC-CHHHHHHHHHHTC-GGGEEEESCC--
T ss_pred hhhccCCCccceEEEEEeccccccchhhhcccccccccccccceeeecccccc-ccccccccccccc-cccccccccc--
Confidence 68889999999888888876 5999999999999988888888877776554 5678899999999 5899999964
Q ss_pred HHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHh
Q 002431 781 QEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLA 857 (922)
Q Consensus 781 ~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~ 857 (922)
++...+|+.+|||+.|+.++| |++++|||+||+|||+.+.....+-+.. |..+.++. .|++++++++.+|+
T Consensus 261 ~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PvI~s~~~g~~e~i~~------~~~G~l~~~~~d~~~la~~i~~ll 334 (370)
T d2iw1a1 261 NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIAD------ANCGTVIAEPFSQEQLNEVLRKAL 334 (370)
T ss_dssp SCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHHHH------HTCEEEECSSCCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccceeeecccCCeeEEEeCCCChHHHhcC------CCceEEEcCCCCHHHHHHHHHHHH
Confidence 466777899999999998888 9999999999999997665544443322 23331443 48999999999999
Q ss_pred cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 858 LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 858 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
+|++++++++++.|+.... |+...+.++++++|
T Consensus 335 ~d~~~~~~~~~~ar~~~~~---~~~~~~~~~~~~ii 367 (370)
T d2iw1a1 335 TQSPLRMAWAENARHYADT---QDLYSLPEKAADII 367 (370)
T ss_dssp HCHHHHHHHHHHHHHHHHH---SCCSCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH---hChhHHHHHHHHHH
Confidence 9999999999999887655 44445555665555
|
| >d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.73 E-value=5e-18 Score=189.57 Aligned_cols=185 Identities=9% Similarity=-0.039 Sum_probs=129.6
Q ss_pred cCCCCCCC-CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCc
Q 002431 704 RSDYGLPE-DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK 780 (922)
Q Consensus 704 r~~~~l~~-~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~ 780 (922)
+...++++ +.++|++++|+ .|+.+.+++++.++++. +.+|+++|.|+. ....+....+.+. .++|.|.|..+.
T Consensus 281 ~~~~~~~~~~~~~i~~vgrl~~~KG~~~Ll~a~~~~~~~--~~~l~~~G~G~~-~~~~~~~~~~~~~-~~~v~~~~~~~~ 356 (477)
T d1rzua_ 281 AEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSL--GGRLVVLGAGDV-ALEGALLAAASRH-HGRVGVAIGYNE 356 (477)
T ss_dssp HHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHHT--TCEEEEEECBCH-HHHHHHHHHHHHT-TTTEEEEESCCH
T ss_pred HHhcccccCCccEEEEEeeeeecCCcHHHHHHHHHHHhh--CCeEEEEecCCc-hHHHHHHHHHhhc-CCeEEEEcccCh
Confidence 34456654 45678888875 59999999999999876 567888887754 3333323334455 489999998877
Q ss_pred HHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHH---HHHHhcCCCCccc-cCCHHHHHHHHHH
Q 002431 781 QEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG---SLCLATGLGEEMI-VNSMKEYEERAVS 855 (922)
Q Consensus 781 ~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~---~~~~~~g~~~~~i-~~~~~~~~~~~~~ 855 (922)
.....+|+.+|+||.||.+|| |++.+|||++|+|||+.....+++-|.. ..+..-+..+.++ ..|++++++++.+
T Consensus 357 ~~~~~~~~~aD~~v~PS~~E~fglv~lEAma~G~PvVas~~GG~~E~v~d~~~~~~~~~~~~G~l~~~~d~~~la~ai~~ 436 (477)
T d1rzua_ 357 PLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRR 436 (477)
T ss_dssp HHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHH
T ss_pred hHHHHHHHhCccccCCccccCCCHHHHHHHHcCCCEEEcCCCCCcceeecCCccccccCCCceEEeCCCCHHHHHHHHHH
Confidence 777778999999999999999 9999999999999994333222221100 0000011122012 2488899888765
Q ss_pred Hh---cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 002431 856 LA---LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 897 (922)
Q Consensus 856 l~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 897 (922)
++ +|++.+++++++..+ ..|+++++|++++++|++++
T Consensus 437 ~l~~~~~~~~~~~~~~~a~~-----~~fsw~~~a~~~~~lY~~ll 476 (477)
T d1rzua_ 437 TVRYYHDPKLWTQMQKLGMK-----SDVSWEKSAGLYAALYSQLI 476 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHT-----CCCBHHHHHHHHHHHHHHHT
T ss_pred HHhhhCCHHHHHHHHHHHHH-----hhCCHHHHHHHHHHHHHHHh
Confidence 54 589998888876643 34999999999999999875
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.66 E-value=9.6e-18 Score=185.71 Aligned_cols=182 Identities=9% Similarity=0.038 Sum_probs=138.8
Q ss_pred CcCCCCCCCCcEEEEecCC---CCCCCHHHHHHHHHHHh--hCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCC
Q 002431 703 KRSDYGLPEDKFIFACFNQ---LYKMDPEIFNTWCNILR--RVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~---~~K~~~~~~~~~~~il~--~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
.+.++|+.++ +++..+++ ..|+.+.++++|..+.. ..|+.+|+++|.|+...+...+.+.+ .. .+.+.|.|.
T Consensus 240 ~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~ll~a~~~~~~~~~~~~~~lvi~G~~~~~~~~~~~~~~~-~~-~~~~~~~~~ 316 (437)
T d2bisa1 240 LLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEE-KH-GNVKVITEM 316 (437)
T ss_dssp HHHHTTCCSC-EEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHH-TC-TTEEEECSC
T ss_pred hhhhhhccCC-ceEEEeecccccchhHHHHHhhhcccccccccccceeeeecccccccccchhhhcc-cc-ccceecccc
Confidence 4667788765 44555554 46999999999998854 46899999999886533333333333 34 477889999
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHH
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAV 854 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~ 854 (922)
.+.++...+++.+||++.|+.++| |++++|||+||+|||+.+-.....- +. +-.+ +++ .|++++++.+.
T Consensus 317 ~~~~~~~~~~~~adi~v~~s~~e~~~~~~~Eama~G~Pvi~~~~g~~~e~-----i~--~~~G-~~~~~~d~~~la~~i~ 388 (437)
T d2bisa1 317 LSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDI-----IT--NETG-ILVKAGDPGELANAIL 388 (437)
T ss_dssp CCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHTTTCEEEEESCTTHHHH-----CC--TTTC-EEECTTCHHHHHHHHH
T ss_pred CcHHHHHHHHhhhccccccccccccchHHHHHHHCCCCEEEeCCCCcHHh-----EE--CCcE-EEECCCCHHHHHHHHH
Confidence 999999999999999999998888 9999999999999996543322221 11 2234 443 58999999999
Q ss_pred HHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 855 SLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 855 ~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
++.. |++.+++++++.++... .||++.++++++++|+.+.+
T Consensus 389 ~ll~~~~~~~~~~~~~~~~~~~---~~s~~~~a~~~~~iY~~~i~ 430 (437)
T d2bisa1 389 KALELSRSDLSKFRENCKKRAM---SFSWEKSAERYVKAYTGSID 430 (437)
T ss_dssp HHHTTTTSCTHHHHHHHHHHHH---HSCHHHHHHHHHHHHHTCSC
T ss_pred HHHhCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHH
Confidence 9775 78889999999988753 39999999999999997764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.54 E-value=6.7e-13 Score=138.01 Aligned_cols=220 Identities=8% Similarity=-0.069 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHH
Q 002431 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQL--------------HDYDMCIARNEEALRL-EPRFAECYGNMANAWKE 79 (922)
Q Consensus 15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~ 79 (922)
.+.+..+|++++...|.++..|+..+..+... +..++|..+|+++++. .|.+...|...+..+..
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 34455666666666666666666555443222 1234555555555543 44445555555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHH
Q 002431 80 KGDIDLAIRYYLVAIELRPNF-ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA-QGLVQEAYSC 157 (922)
Q Consensus 80 ~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~ 157 (922)
.|++++|...|+++++..|.+ ..+|..++....+.|+++.|.++|+++++..|.+...+...+..... .|+.+.|..+
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i 191 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHH
Confidence 555555555555555555443 22445555555555555555555555555555555555544444322 3455555555
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002431 158 YLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP----DAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233 (922)
Q Consensus 158 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 233 (922)
|+++++..|.+...|...+..+...|++++|..+|+++++..|.++ .+|..........|+.+.+.++++++.+..
T Consensus 192 ~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5555555555555555555555555555555555555555443322 234444444444455555555555544444
Q ss_pred C
Q 002431 234 P 234 (922)
Q Consensus 234 p 234 (922)
|
T Consensus 272 ~ 272 (308)
T d2onda1 272 R 272 (308)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.54 E-value=2e-14 Score=138.34 Aligned_cols=162 Identities=9% Similarity=0.042 Sum_probs=120.7
Q ss_pred CcCCCCCCCCcEEEEecC---CCCCCCHHHHHHHHHHHh--hCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCC
Q 002431 703 KRSDYGLPEDKFIFACFN---QLYKMDPEIFNTWCNILR--RVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~---~~~K~~~~~~~~~~~il~--~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
+++++|++++. +|..++ ++.|+.+.++++|..+.+ ..|+.+|+++|.|+...+...+.+.+. . ...+.+.|.
T Consensus 23 ~~~~~~l~~~~-~il~~Grl~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~-~-~~~~~~~~~ 99 (196)
T d2bfwa1 23 LLSKFGMDEGV-TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEK-H-GNVKVITEM 99 (196)
T ss_dssp HHHHTTCCSCE-EEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHH-C-TTEEEECSC
T ss_pred HHHHhCCCCCC-EEEEEcCCCccccCHHHHHHHHHhhhcccCCCCeEEEEEeecccchhhhhhhhhhc-c-ceeEEeeec
Confidence 67889997663 344444 456999999999999864 468999999998754333333333332 3 367788899
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHH
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAV 854 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~ 854 (922)
.+..+...+|+.+||++.|+.++| |++++|||+||+|||+........-+. +-.. +++ .|++++++.+.
T Consensus 100 ~~~~~l~~~~~~~di~v~ps~~e~~~~~~~Eam~~G~pvI~~~~~~~~e~i~-------~~~g-~~~~~~~~~~l~~~i~ 171 (196)
T d2bfwa1 100 LSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIIT-------NETG-ILVKAGDPGELANAIL 171 (196)
T ss_dssp CCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHHHHHHCC-------TTTC-EEECTTCHHHHHHHHH
T ss_pred cccccchhccccccccccccccccccccchhhhhcCceeeecCCCccceeec-------CCce-eeECCCCHHHHHHHHH
Confidence 999999999999999999999988 999999999999999754322211111 2233 333 58899999998
Q ss_pred HHhc-CHHHHHHHHHHHHhhcc
Q 002431 855 SLAL-DRQKLQALTNKLKSVRL 875 (922)
Q Consensus 855 ~l~~-d~~~~~~~~~~~~~~~~ 875 (922)
++.. |++.+..+++..+++..
T Consensus 172 ~~l~~~~~~~~~~~~~a~~~a~ 193 (196)
T d2bfwa1 172 KALELSRSDLSKFRENCKKRAM 193 (196)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHH
Confidence 8776 89999999999988653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.53 E-value=1.1e-12 Score=136.45 Aligned_cols=148 Identities=9% Similarity=0.017 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHHhHHHHHHHcCChHHHHHHHHHH
Q 002431 186 NRALQYYKEAVKL-KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQA 262 (922)
Q Consensus 186 ~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 262 (922)
++|..+|+++++. .|.+...+..++..+...|++++|...|+++++..|. ...|...+......|+++.|.+.|+++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4445555555542 3444444555555555555555555555555544443 223444444444444444444444444
Q ss_pred HhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhc
Q 002431 263 IGCDPRFLEAYNNLGNALKD-VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 333 (922)
Q Consensus 263 l~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 333 (922)
++..|.....+...+..... .|+.+.|..+|+++++.+|+++..+...+..+...|+++.|..+|++++..
T Consensus 161 l~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 161 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 44444444444444433222 244444444444444444444444444444444444444444444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=9.4e-14 Score=120.56 Aligned_cols=109 Identities=23% Similarity=0.302 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 115 (922)
+...|..++..|++++|+..|+++++.+|.++.+|..+|.+|...|++++|+..|.++++.+|+++.+|..+|.++...|
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 33455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002431 116 RLNEAAQCCRQALALNPLLVDAHSNLGNL 144 (922)
Q Consensus 116 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 144 (922)
++++|+..|+++++.+|+++.++..++.+
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 55555555555555555555555555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.1e-13 Score=120.09 Aligned_cols=108 Identities=22% Similarity=0.362 Sum_probs=94.6
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (922)
+...|..+...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..++++++++|+++.+++++|.++..+|
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 34568888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002431 421 HVEAAIKSYKQALLLRPDFPEATCNLLH 448 (922)
Q Consensus 421 ~~~~A~~~~~~al~~~p~~~~~~~~l~~ 448 (922)
++++|+..|+++++++|+++.++..+..
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 113 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQN 113 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999998888776654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3e-15 Score=166.80 Aligned_cols=223 Identities=13% Similarity=0.110 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002431 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 153 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (922)
+|.++|++++++.|+.+.++..+|.++...+++++| |++++..+|+....+.....+. ...+..+++.+++..+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence 677777777777777777777777777777777765 6777777665544433222222 11244555555555543
Q ss_pred CCC----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 002431 233 RPN----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT 308 (922)
Q Consensus 233 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 308 (922)
... ......++.+....+.++.|+..+.++.+.+|++...+..+|..+.+.|+.++|...+++++..++ ..++.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~ 156 (497)
T d1ya0a1 79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLV 156 (497)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHH
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHH
Confidence 221 111112233333344455555555555555555555555555555555555555555555544332 23444
Q ss_pred hHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 002431 309 NLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY 382 (922)
Q Consensus 309 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 382 (922)
.+|.++...+++++|+.+|+++++++|++..+|+.+|.++...|+..+|+.+|.+++..+|..+.++.+++.++
T Consensus 157 ~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=5.1e-15 Score=164.92 Aligned_cols=226 Identities=14% Similarity=0.111 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002431 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198 (922)
Q Consensus 119 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (922)
+|.++|++++++.|+..+++..+|.++..++++++| |++++..+|+..........+. ...+..+++.+++..+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence 677778888877777777777778877777777765 6777777776555543322222 12245566666666654
Q ss_pred CC--CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 002431 199 KP--TFPD-AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYN 274 (922)
Q Consensus 199 ~p--~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 274 (922)
.. +... ....++.+....+.|+.|+..+.+..+..|+ ...+..+|..+.+.|+.++|...+.+++..++ ..++.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~ 156 (497)
T d1ya0a1 79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLV 156 (497)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHH
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHH
Confidence 32 2122 2222344455566677777777776666665 66677777777777888887777777766554 34677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHc
Q 002431 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ 351 (922)
Q Consensus 275 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 351 (922)
.+|.++...|++++|+.+|+++++++|++...++.+|.++...|+..+|+.+|.+++...|+.+.++.+|+.++.+.
T Consensus 157 ~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 77888888888888888888888888888888888888888888888888888888877777777777777766543
|
| >d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: First mannosyl transferase WbaZ species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.49 E-value=6.7e-14 Score=130.34 Aligned_cols=146 Identities=13% Similarity=0.097 Sum_probs=109.6
Q ss_pred cCCCCCCCCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh--hHHHHHHHHHHcCCCCCceEEcCCCCcH
Q 002431 704 RSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA--GEMRLRAYAVAQGVQPDQIIFTDVAMKQ 781 (922)
Q Consensus 704 r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~--~~~~l~~~~~~~g~~~~rv~f~~~~~~~ 781 (922)
|-+++..++.++|.+--.+.|+.+.+++++.+ .|+.+|+++|.++. ..+.+.+.+.+.+ .++|+|+|.++..
T Consensus 5 ~~~~~~~~~~~l~iGrl~~~K~~~~~i~a~~~----l~~~~l~ivg~~~~~~~~~~~~~~~~~~~--~~~v~~~g~~~~~ 78 (166)
T d2f9fa1 5 KFKFKCYGDFWLSVNRIYPEKRIELQLEVFKK----LQDEKLYIVGWFSKGDHAERYARKIMKIA--PDNVKFLGSVSEE 78 (166)
T ss_dssp TCCCCCCCSCEEEECCSSGGGTHHHHHHHHHH----CTTSCEEEEBCCCTTSTHHHHHHHHHHHS--CTTEEEEESCCHH
T ss_pred ccccCCCCCEEEEEecCccccCHHHHHHHHHH----hcCCeEEEEEecccccchhhhhhhhcccc--cCcEEEeeccccc
Confidence 44566666666554444456999999998754 57889999986543 2445655666554 4799999999999
Q ss_pred HHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccc-cCCHHHHHHHHHHHhcC
Q 002431 782 EHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI-VNSMKEYEERAVSLALD 859 (922)
Q Consensus 782 ~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i-~~~~~~~~~~~~~l~~d 859 (922)
+...+|+.+|+++.|+.++| |.+.+|||++|+|||+.+......-+. -+-.+ ++ ..|++++++.+.++..|
T Consensus 79 ~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~~~g~pvi~s~~~~~~e~i~------~~~~g-~~~~~d~~~~~~~i~~l~~~ 151 (166)
T d2f9fa1 79 ELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVI------NEKTG-YLVNADVNEIIDAMKKVSKN 151 (166)
T ss_dssp HHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCC------BTTTE-EEECSCHHHHHHHHHHHHHC
T ss_pred ccccccccccccccccccccccccccccccccccceeecCCcceeeec------CCccc-ccCCCCHHHHHHHHHHHHhC
Confidence 99999999999999999988 999999999999999766543332221 13344 44 46899999999999999
Q ss_pred HHH
Q 002431 860 RQK 862 (922)
Q Consensus 860 ~~~ 862 (922)
++.
T Consensus 152 ~~~ 154 (166)
T d2f9fa1 152 PDK 154 (166)
T ss_dssp TTT
T ss_pred HHH
Confidence 763
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=4.2e-13 Score=138.17 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=91.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 002431 74 ANAWKEKGDIDLAIRYYLVAIELR------PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL------VDAHSNL 141 (922)
Q Consensus 74 a~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l 141 (922)
|.+|...|++++|++.|.++++.. +....++..+|.+|.+.|++++|++.++++++..+.. ..++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 666777777777777777776652 1123456667777777777777777777766553222 3345555
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-------HHHH
Q 002431 142 GNLMKA-QGLVQEAYSCYLEALRIQPT------FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP-------DAYL 207 (922)
Q Consensus 142 a~~~~~-~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~ 207 (922)
|.++.. .|++++|+..|++++++.+. ...++..+|.++...|++++|+..|++++...+... ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 555543 46666666666666554211 123455556666666666666666666655544432 1334
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002431 208 NLGNVYKALGMPQEAIMCYQRAVQTRP 234 (922)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~~~p 234 (922)
..+.++...|++..|...++++.+.+|
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 455555555555555555555555544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=8.6e-13 Score=125.79 Aligned_cols=128 Identities=20% Similarity=0.173 Sum_probs=98.6
Q ss_pred hHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCH
Q 002431 309 NLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV 388 (922)
Q Consensus 309 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 388 (922)
..|..+...|++++|++.|.+ ..+.++.+|+++|.+|..+|++++|++.|+++++++|+++.+++++|.++.++|++
T Consensus 10 ~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 10 NEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccH
Confidence 346666677777777766664 34455667777777777788888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhhCCC----------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 389 TDAIQDYIRAITIRPT----------------MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 389 ~~A~~~~~~al~~~p~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
++|+..|++++...+. ..++++++|.++.++|++++|.+.+++++++.|+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 8888888887765432 24778899999999999999999999999998874
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=6.3e-13 Score=122.84 Aligned_cols=125 Identities=22% Similarity=0.250 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002431 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113 (922)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 113 (922)
..+...|..+++.|+|++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|++..++..+|.++..
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 34556677777888888888888888888888888888888888888888888888888888888887788888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHcCCHHHHHHHH
Q 002431 114 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLM--KAQGLVQEAYSCY 158 (922)
Q Consensus 114 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~--~~~g~~~~A~~~~ 158 (922)
.|++++|+..+++++..+|++..++..++.+. ...+.+++|+...
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~ 137 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 137 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 88888888888888888887777776666553 3344456665543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=9.5e-13 Score=125.47 Aligned_cols=127 Identities=16% Similarity=0.144 Sum_probs=74.4
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
..|..+...|+|++|++.|+++ .+.++.+++.+|.++..+|++++|++.|+++++.+|+++.+++.+|.++.++|++
T Consensus 10 ~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 10 NEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccH
Confidence 4556666666666666666543 3334556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhcCCCc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002431 84 DLAIRYYLVAIELRPNF----------------ADAWSNLASAYMRKGRLNEAAQCCRQALALNPL 133 (922)
Q Consensus 84 ~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 133 (922)
++|+..|++++...+.+ .++++.+|.++...|++++|++.++++++..|.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 66666666666543321 234455555555555555555555555554443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.2e-12 Score=120.99 Aligned_cols=121 Identities=22% Similarity=0.239 Sum_probs=74.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002431 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG 149 (922)
Q Consensus 70 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 149 (922)
+...|..+++.|+|++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|++..++..+|.++...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHH--HHcCCHHHHHH
Q 002431 150 LVQEAYSCYLEALRIQPTFAIAWSNLAGLF--MESGDLNRALQ 190 (922)
Q Consensus 150 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~--~~~g~~~~A~~ 190 (922)
++++|+..+++++..+|++..++..++.+. ...+.+++|+.
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666666666555554443 23333444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=5.9e-13 Score=137.03 Aligned_cols=199 Identities=14% Similarity=0.059 Sum_probs=153.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------HH
Q 002431 35 NLLLLGAIYYQLHDYDMCIARNEEALRLEP------RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF------AD 102 (922)
Q Consensus 35 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 102 (922)
.+...|.+|...|++++|++.|.++++... ..+.++..+|.+|.+.|++++|++.|+++++..+.. ..
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 455568899999999999999999988632 235789999999999999999999999999875432 55
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH------
Q 002431 103 AWSNLASAYMR-KGRLNEAAQCCRQALALNPL------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA------ 169 (922)
Q Consensus 103 ~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------ 169 (922)
++..++.++.. .|++++|++.|++++++.+. ...++..+|.++...|++++|+..|++++...+...
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 77888888865 69999999999999876422 244688899999999999999999999999876553
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHH--cCChHHHHHHHHHHHhhC
Q 002431 170 -IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD-----AYLNLGNVYKA--LGMPQEAIMCYQRAVQTR 233 (922)
Q Consensus 170 -~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~ 233 (922)
..+...+.++...|++..|...++++.+.+|.... ....++.++.. .+.+++|+..|+++.+.+
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 35677888899999999999999999999876543 23344444443 245677777776655554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.37 E-value=5.2e-13 Score=129.31 Aligned_cols=102 Identities=21% Similarity=0.279 Sum_probs=72.4
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Q 002431 339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 418 (922)
Q Consensus 339 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 418 (922)
..+...|..+++.|++++|+..|+++++++|.++.+|.++|.+|.+.|++++|+..|+++++++|+++.+|+++|.+|..
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~ 84 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCH
Q 002431 419 SGHVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 419 ~g~~~~A~~~~~~al~~~p~~~ 440 (922)
+|++++|+..|+++++++|++.
T Consensus 85 l~~~~~A~~~~~~al~l~p~~~ 106 (201)
T d2c2la1 85 MESYDEAIANLQRAYSLAKEQR 106 (201)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccH
Confidence 7777777777777777666443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.7e-11 Score=114.01 Aligned_cols=134 Identities=19% Similarity=0.211 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHH
Q 002431 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 350 (922)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 350 (922)
..+...|..+...|++++|+..|+++++..|........... ....+ ...++.++|.+|.+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~----------~~~~~---------~~~~~~nla~~y~k 74 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQ----------KAQAL---------RLASHLNLAMCHLK 74 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHH----------HHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHh----------hhchh---------HHHHHHHHHHHHHh
Confidence 344556666666677777777776666665543221110000 00000 01235566666667
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHH
Q 002431 351 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423 (922)
Q Consensus 351 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 423 (922)
+|++++|+..++++++++|.++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+..+.++..
T Consensus 75 ~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 147 (170)
T d1p5qa1 75 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 147 (170)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777666777777777777777777777777777776666666666666665554443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=5.6e-12 Score=121.80 Aligned_cols=114 Identities=16% Similarity=0.161 Sum_probs=69.6
Q ss_pred CChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHH
Q 002431 234 PNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 313 (922)
Q Consensus 234 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 313 (922)
|+...+...|..++..|++++|+..|++++..+|+++.+|..+|.+|...|++++|+..|+++++++|+++.+++.+|.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44445555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHH
Q 002431 314 YMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 347 (922)
Q Consensus 314 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 347 (922)
|...|++++|+..|++++++.|++...+...+..
T Consensus 82 ~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 6666666666666666666555544444443333
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.30 E-value=5.8e-10 Score=112.60 Aligned_cols=226 Identities=19% Similarity=0.302 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCChhHHHhHHH
Q 002431 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA----LGMPQEAIMCYQRAVQTRPNAIAFGNLAS 244 (922)
Q Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~ 244 (922)
+.+++.+|..+...+++++|+++|+++.+. .+..+++.+|.+|.. ..++..|..+++.+....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~----------- 68 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----------- 68 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-----------
Confidence 445555555555555555555555555443 344555555555554 334445555544443322
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHH----
Q 002431 245 TYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKD----VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME---- 316 (922)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---- 316 (922)
+..+...++..+.. ..+.++|...++.+.+..+ ..+...++..+..
T Consensus 69 ------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~ 122 (265)
T d1ouva_ 69 ------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVV 122 (265)
T ss_dssp ------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSS
T ss_pred ------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcc
Confidence 23333444444332 2344455555555444322 2333333333332
Q ss_pred cCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----hCCH
Q 002431 317 WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ----QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE----IGRV 388 (922)
Q Consensus 317 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~ 388 (922)
......|...+.+... +.+...+..+|..+.. ..+...+...++.+.+ +.++.+.+.+|.++.. ..++
T Consensus 123 ~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 123 TRDFKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred cchhHHHHHHhhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccch
Confidence 2223334444433322 3344555556666654 4566677777777765 3577888888888877 5688
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCC
Q 002431 389 TDAIQDYIRAITIRPTMAEAHANLASAYKD----SGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 389 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 439 (922)
++|+.+|+++.+.+ ++.+++.||.+|.. ..++++|.++|+++.+.+...
T Consensus 199 ~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 199 KEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred hhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 88899998888874 57788889998886 447888999999998877543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.30 E-value=7.1e-12 Score=107.35 Aligned_cols=94 Identities=21% Similarity=0.168 Sum_probs=84.1
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 419 (922)
.++.+|..+.+.|++++|+..|+++++.+|+++.++..+|.++.+.|++++|+..|+++++++|++..++..+|.+|...
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence 35678888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 002431 420 GHVEAAIKSYKQAL 433 (922)
Q Consensus 420 g~~~~A~~~~~~al 433 (922)
|++++|++.+++.+
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998875
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=5.4e-11 Score=110.61 Aligned_cols=116 Identities=16% Similarity=0.105 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002431 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---------------AECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98 (922)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 98 (922)
..+...|..++..|+|++|+..|++++...|.. ..++..+|.+|.+.|++++|+..++++++.+|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence 445566777777777777777777777665532 12344455555555555555555555555555
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002431 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG 149 (922)
Q Consensus 99 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 149 (922)
+++.+++.+|.++...|++++|+..|+++++++|++..+...++.+....+
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555544433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.28 E-value=1.3e-11 Score=105.67 Aligned_cols=95 Identities=21% Similarity=0.132 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002431 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113 (922)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 113 (922)
...+.+|.++.+.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.+|..
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence 34567888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHH
Q 002431 114 KGRLNEAAQCCRQAL 128 (922)
Q Consensus 114 ~g~~~~A~~~~~~~l 128 (922)
.|++++|++.+++.+
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 888888888888765
|
| >d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Trehalose-6-phosphate synthase, OtsA domain: Trehalose-6-phosphate synthase, OtsA species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=1.4e-11 Score=133.66 Aligned_cols=170 Identities=14% Similarity=0.120 Sum_probs=127.1
Q ss_pred CcEEEEecCCCC--CCCHHHHHHHHHHHhhCCC----eEEEEecCChhh--------HHH-------HHHHHHHcCCCCC
Q 002431 712 DKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPAAG--------EMR-------LRAYAVAQGVQPD 770 (922)
Q Consensus 712 ~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~--------~~~-------l~~~~~~~g~~~~ 770 (922)
+..++++++|+. |+.+.++++|.+++++.|+ ..|++++.|+.. ..+ +...+...|. .+
T Consensus 253 ~~~~il~V~Rld~~KGi~~~l~A~~~~l~~~p~~~~~v~lv~~~~~~~~~~~~~~~~~~ev~~lv~~in~~~~~~~~-~~ 331 (456)
T d1uqta_ 253 NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGW-TP 331 (456)
T ss_dssp TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTB-CS
T ss_pred CCeEEEEeCCCchhhchHHHHHHHHHHHHhCccccccEEEEEEcCCcccchHHHHHHHHHHHHHHHHHHhhhccCCC-Cc
Confidence 667888999875 9999999999999999986 456666644311 112 2222333466 47
Q ss_pred ceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCC-----eeeecCCcchhhhHHHHHHhcCCCCcccc-
Q 002431 771 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP-----MITLPLEKMATRVAGSLCLATGLGEEMIV- 843 (922)
Q Consensus 771 rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~P-----vv~~~~~~~~~r~~~~~~~~~g~~~~~i~- 843 (922)
.|.+.+..+..+..++|+.+||+|.|+.++| |++++|||+||+| ||. |++++ .-..++ +. +++
T Consensus 332 ~v~~~~~~~~~~l~a~~~~Adv~v~~s~~EG~~lv~~Ea~a~~~p~~~g~lIl-------S~~~G-~~~~l~-~g-~lVn 401 (456)
T d1uqta_ 332 LYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVL-------SQFAG-AANELT-SA-LIVN 401 (456)
T ss_dssp EEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEE-------ETTBG-GGGTCT-TS-EEEC
T ss_pred eeeccCCcCHHHHhHHHhhhceeecCCccCCCCcHHHHHHHhCCCCCCCcEEE-------eCCCC-CHHHhC-Ce-EEEC
Confidence 7899999999999999999999999999999 9999999999999 563 34431 000111 12 322
Q ss_pred -CCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 844 -NSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 844 -~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
.|.+++++++.++++ +++.++++.+++++.+.. +|...+++.+.+.+++
T Consensus 402 P~d~~~~A~ai~~aL~~~~~er~~~~~~~~~~v~~---~~~~~W~~~fl~~l~~ 452 (456)
T d1uqta_ 402 PYDRDEVAAALDRALTMSLAERISRHAEMLDVIVK---NDINHWQECFISDLKQ 452 (456)
T ss_dssp TTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHh
Confidence 499999999999887 667888888888888755 8999988887777665
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.25 E-value=4.7e-11 Score=110.86 Aligned_cols=146 Identities=19% Similarity=0.293 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHH
Q 002431 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYK 349 (922)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 349 (922)
...+...|..+...|++.+|+..|++++...+......... ......+ ...++.++|.+|.
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~----------~~~~~~~---------~~~~~~Nla~~~~ 75 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE----------SKASESF---------LLAAFLNLAMCYL 75 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH----------HHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh----------hhhcchh---------HHHHHHhHHHHHH
Confidence 34555666666666666666666666665433221100000 0000000 1223556677777
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHH-HHHHH
Q 002431 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE-AAIKS 428 (922)
Q Consensus 350 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~ 428 (922)
++|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...++.+....+... ...+.
T Consensus 76 ~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~ 155 (168)
T d1kt1a1 76 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRT 155 (168)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777666666665555433 33444
Q ss_pred HHHHHh
Q 002431 429 YKQALL 434 (922)
Q Consensus 429 ~~~al~ 434 (922)
|.++++
T Consensus 156 ~~~~f~ 161 (168)
T d1kt1a1 156 YANMFK 161 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2.5e-11 Score=104.99 Aligned_cols=104 Identities=9% Similarity=-0.064 Sum_probs=82.6
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHH
Q 002431 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG---RVTDAIQDYIRAITIRPTM--AEAHANLASAYK 417 (922)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~ 417 (922)
.++..+...+++++|.+.|+++++.+|.++.+++++|.++.+.+ ++++|+..|+++++.+|.+ ..+++++|.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 45666777888888888888888888888888888888887644 4456888888888877654 457888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002431 418 DSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (922)
Q Consensus 418 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (922)
+.|++++|+++|+++++++|++..+....
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~ 112 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKELE 112 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 88888888888888888888887776543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.23 E-value=2.8e-09 Score=107.40 Aligned_cols=94 Identities=23% Similarity=0.298 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKE----KGDIDLAIRYYLVAIELRPNFADAWSNLA 108 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 108 (922)
|.+++.+|..++..+++++|+++|+++.+. .+..+++.+|.+|.. ..++..|..+++.+... .++.+...++
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~ 77 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccc
Confidence 455555666666666666666666655443 345555555555554 44555555555555432 2344444555
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHh
Q 002431 109 SAYMR----KGRLNEAAQCCRQALAL 130 (922)
Q Consensus 109 ~~~~~----~g~~~~A~~~~~~~l~~ 130 (922)
..+.. ..+.++|...++.+...
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~ 103 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDL 103 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred cccccccccchhhHHHHHHHhhhhhh
Confidence 44433 23445555555555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.22 E-value=4.1e-11 Score=111.61 Aligned_cols=134 Identities=19% Similarity=0.221 Sum_probs=81.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcC
Q 002431 273 YNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG 352 (922)
Q Consensus 273 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 352 (922)
+...|..+...|++++|+..|+++++..+.. .+.....+.....|.....+.++|.++.+.|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~ 91 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQPVALSCVLNIGACKLKMS 91 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh------------------hhhhhhHHHHHhChhhHHHHHHHHHHHHhhc
Confidence 3455666777777777777777766532110 0111111222333444555666667777777
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHH
Q 002431 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEA 424 (922)
Q Consensus 353 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 424 (922)
++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+..+.....+
T Consensus 92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777666666666666655444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=2.8e-11 Score=104.69 Aligned_cols=108 Identities=11% Similarity=-0.013 Sum_probs=76.6
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLH---DYDMCIARNEEALRLEPRF--AECYGNMANAWK 78 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~ 78 (922)
.++..+...+++++|.+.|++++..+|.++.+++.+|.++.+.+ ++++|+..|++++..+|.+ ..+++.+|.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777776544 3446777777777766554 346777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 79 EKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111 (922)
Q Consensus 79 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 111 (922)
+.|++++|+++|+++++.+|++..+...+..+.
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 777777777777777777777777666655544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.22 E-value=7.1e-11 Score=107.58 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=45.9
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 417 (922)
++.++|.+|.++|++++|++.++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+..
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344556666666666666666666666666666666666666666666666666666666666665555555555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.21 E-value=6.9e-11 Score=110.01 Aligned_cols=133 Identities=16% Similarity=0.191 Sum_probs=94.9
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
..+..++..|+|++|+..|+++++..+.. .+.....+....+|....++..+|.++.+.|++
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~ 93 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQPVALSCVLNIGACKLKMSDW 93 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhh------------------hhhhhhHHHHHhChhhHHHHHHHHHHHHhhccc
Confidence 34666667777777777776665432110 011111122233455677888888888888888
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002431 84 DLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154 (922)
Q Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 154 (922)
++|+..|+++++++|+++.+|+.+|.++...|++++|+..|+++++++|++..+...++.+........++
T Consensus 94 ~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 94 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888877766555544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.20 E-value=1.9e-10 Score=106.64 Aligned_cols=129 Identities=14% Similarity=0.072 Sum_probs=70.5
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
..|..+++.|+|.+|+..|++++...+..... ..+.. . ...+....++..+|.+|...|++
T Consensus 20 e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~------------~~~~~-~------~~~~~~~~~~~Nla~~~~~l~~~ 80 (168)
T d1kt1a1 20 EKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL------------SEKES-K------ASESFLLAAFLNLAMCYLKLREY 80 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC------------CHHHH-H------HHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcc------------chhhh-h------hcchhHHHHHHhHHHHHHHhhhc
Confidence 45667777777777777777766533211000 00000 0 00000123445566666666666
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002431 84 DLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLV 151 (922)
Q Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 151 (922)
++|+..++++++++|++..+++.+|.++...|++++|+..|+++++++|++..+...++.+....+..
T Consensus 81 ~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 148 (168)
T d1kt1a1 81 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH 148 (168)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence 66666666666666666666666666666666666666666666666666666666665555544443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.19 E-value=1.5e-10 Score=105.37 Aligned_cols=128 Identities=18% Similarity=0.131 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002431 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113 (922)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 113 (922)
..+...|..+++.|+|.+|+..|++++...+...... +.........+ ...++.++|.+|.+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~-------------~~~~~~~~~~~-----~~~~~~Nla~~~~~ 79 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD-------------DQILLDKKKNI-----EISCNLNLATCYNK 79 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC-------------CHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh-------------hHHHHHhhhhH-----HHHHHhhHHHHHHH
Confidence 3455567777777777777777777776544311000 00000000000 01234445555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 002431 114 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF 179 (922)
Q Consensus 114 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 179 (922)
+|++++|++.++++++.+|.+..+++.+|.++...|++++|+..|+++++++|++..+...+..+.
T Consensus 80 l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 80 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred hcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555544444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.17 E-value=3e-11 Score=108.67 Aligned_cols=102 Identities=23% Similarity=0.272 Sum_probs=69.5
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Q 002431 349 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI----------GRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 418 (922)
Q Consensus 349 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 418 (922)
.+.+.+++|+..|+++++++|+++++++.+|.++... +.+++|+..|+++++++|+++.+++++|.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3445566666666666666666666666666666533 344667777777777777777777777777766
Q ss_pred cC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHhh
Q 002431 419 SG-----------HVEAAIKSYKQALLLRPDFPEATCNLLHTL 450 (922)
Q Consensus 419 ~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 450 (922)
.| ++++|.++|+++++++|++..++.++....
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 130 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence 54 367888888888888888887777665543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=6.8e-11 Score=103.93 Aligned_cols=99 Identities=18% Similarity=0.235 Sum_probs=85.7
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH-------HHHHHHH
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA-------EAHANLA 413 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la 413 (922)
+..+|..+...|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|++. .++..+|
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 557888899999999999999999999999999999999999999999999999999998876653 4677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 414 SAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
.++...+++++|+++|++++..+++.
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~~~~~ 112 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAEHRTP 112 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence 88999999999999999999887753
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.16 E-value=2.6e-11 Score=109.14 Aligned_cols=105 Identities=24% Similarity=0.385 Sum_probs=68.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 6 AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHD----------YDMCIARNEEALRLEPRFAECYGNMAN 75 (922)
Q Consensus 6 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~ 75 (922)
+..+-+.+.|++|+..|+++++.+|+++.+++.+|.++...++ +++|+..|+++++++|+++.+++.+|.
T Consensus 4 ~~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 4 ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 83 (145)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHH
Confidence 3445667788889999999888889888888888888875543 456666666666666666666666666
Q ss_pred HHHHcCC-----------HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002431 76 AWKEKGD-----------IDLAIRYYLVAIELRPNFADAWSNLASA 110 (922)
Q Consensus 76 ~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~la~~ 110 (922)
+|..+|+ +++|++.|+++++++|++..++..++.+
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence 6655442 3444444444444444444444444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=3.4e-10 Score=99.37 Aligned_cols=95 Identities=24% Similarity=0.371 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------HHHHHHHHHH
Q 002431 38 LLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF-------ADAWSNLASA 110 (922)
Q Consensus 38 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~ 110 (922)
.+|..++..|+|++|+..|+++++.+|+++.++..+|.+|.+.|++++|+..++++++.+|++ ..++..+|.+
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 444444444555555555544444444444444444555555555555555554444443332 1234445555
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC
Q 002431 111 YMRKGRLNEAAQCCRQALALNP 132 (922)
Q Consensus 111 ~~~~g~~~~A~~~~~~~l~~~p 132 (922)
+...+++++|+..|++++..++
T Consensus 89 ~~~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCC
Confidence 5555555555555555555443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=6.5e-09 Score=85.17 Aligned_cols=77 Identities=18% Similarity=0.097 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 002431 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT-------MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATC 444 (922)
Q Consensus 372 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 444 (922)
++-.+.+|.++.+.|++++|+.+|++++++.|. ...++.+||.++.+.|++++|+..|+++++++|+++.+..
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 445667777777777777777777777766432 3567777888888888888888888888888888877777
Q ss_pred HHHH
Q 002431 445 NLLH 448 (922)
Q Consensus 445 ~l~~ 448 (922)
++..
T Consensus 85 Nl~~ 88 (95)
T d1tjca_ 85 NLKY 88 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=8.2e-09 Score=84.55 Aligned_cols=78 Identities=14% Similarity=0.059 Sum_probs=56.9
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPL-------AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 412 (922)
.++.+|.++.+.|++++|+..|++++++.|. ...++.++|.++.+.|++++|+..|+++++++|+++.++.++
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 3556677777777777777777777665332 256778888888888888888888888888888888888877
Q ss_pred HHHHH
Q 002431 413 ASAYK 417 (922)
Q Consensus 413 a~~~~ 417 (922)
+.+..
T Consensus 87 ~~~~~ 91 (95)
T d1tjca_ 87 KYFEY 91 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.79 E-value=1.1e-08 Score=93.26 Aligned_cols=95 Identities=15% Similarity=0.110 Sum_probs=72.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCC------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--------
Q 002431 345 AVIYKQQGNYADAISCYNEVLRIDPLA------------ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT-------- 404 (922)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------- 404 (922)
|..+...|++++|+..|++++++.|.. ..++.++|.+|..+|++++|+..+++++++.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 555666677777777777776665432 356788899999999999999999988876431
Q ss_pred ---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 405 ---MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 405 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
...+++++|.+|..+|++++|+..|++++++.|+.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 23478899999999999999999999999986654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.76 E-value=7.3e-09 Score=102.59 Aligned_cols=131 Identities=11% Similarity=-0.047 Sum_probs=90.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID 84 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 84 (922)
.++..++.|++++|+..++++++.+|.+..++..++.+++..|++++|++.|+++++.+|++...+..++.++...+..+
T Consensus 2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 2 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp CHHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccH
Confidence 35566777888888888888888888888888888888888888888888888888877777777777777766655555
Q ss_pred HHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002431 85 LAIRYYLVAIE-LRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV 135 (922)
Q Consensus 85 ~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 135 (922)
++...+.+... ..|.....+...+..+...|++++|.+.++++.+..|..+
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 133 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 54443332222 2344455556666777777777777777777777666543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.69 E-value=3.5e-08 Score=89.72 Aligned_cols=93 Identities=17% Similarity=0.139 Sum_probs=55.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCc------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLR------------TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR------ 65 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------ 65 (922)
..|..++..|+|++|+..|+++++..|+. ..++..+|.+|..+|++++|+..++++++..|.
T Consensus 14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~ 93 (156)
T d2hr2a1 14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 93 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence 44666777777777777777777655543 234556666666666666666666666654321
Q ss_pred -----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002431 66 -----FAECYGNMANAWKEKGDIDLAIRYYLVAIEL 96 (922)
Q Consensus 66 -----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 96 (922)
...+++.+|.+|...|++++|+..|++++++
T Consensus 94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1224455555555555555555555555554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.67 E-value=1.1e-08 Score=101.28 Aligned_cols=132 Identities=11% Similarity=-0.038 Sum_probs=102.8
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 002431 313 IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI 392 (922)
Q Consensus 313 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 392 (922)
-..+.|++++|+..++++++.+|++...+..++.+|+..|++++|++.|+++++++|++..++..++.++...+..+++.
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 34566888888888888888888888888888888888888888888888888888888888888888877766666655
Q ss_pred HHHHHHHhh-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 002431 393 QDYIRAITI-RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATC 444 (922)
Q Consensus 393 ~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 444 (922)
..+.+.... .|+....+...+..+...|+.++|.+.++++.+..|+.+..+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 443333222 4555667777888899999999999999999999998765543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.46 E-value=5.3e-07 Score=83.19 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002431 371 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434 (922)
Q Consensus 371 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 434 (922)
...++..++.++...|++++|+..++++++.+|.+..+|..++.+|...|++.+|++.|+++.+
T Consensus 66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3567778888888888888888888888888888888888888888888888888888888743
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.42 E-value=4.9e-07 Score=83.38 Aligned_cols=128 Identities=14% Similarity=0.027 Sum_probs=96.7
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 419 (922)
.+...|......|++++|+..|.+++.+.+......... +. -.......+.+....++..++.++...
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~-----w~~~~r~~l~~~~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQ-----FVEPFATALVEDKVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------ST-----THHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hH-----HHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 345667777778888888888888887766543211100 00 011122223334467889999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHHHHHHhccCCCCC
Q 002431 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPS 481 (922)
Q Consensus 420 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~ 481 (922)
|++++|+..++++++.+|.+..++..++.++...|++.+|...|+++...+.+.+ |+.|+
T Consensus 81 g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eL--G~~P~ 140 (179)
T d2ff4a2 81 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL--GIDPG 140 (179)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH--SCCCC
T ss_pred CCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh--CCCcC
Confidence 9999999999999999999999999999999999999999999999999888765 45554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=0.0011 Score=70.78 Aligned_cols=399 Identities=11% Similarity=-0.029 Sum_probs=219.0
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH---HHHHHHH
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYG---NMANAWK 78 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~ 78 (922)
.|..|...+++|++.++.++..++ +..|--+...+.............+ +...++..|+.+.... .....+.
T Consensus 9 ~y~~a~~a~~~~~~~~~~~~~~~L-~dypL~pYl~~~~l~~~~~~~~~~~----i~~Fl~~~p~~P~~~~lr~~~l~~L~ 83 (450)
T d1qsaa1 9 RYAQIKQAWDNRQMDVVEQMMPGL-KDYPLYPYLEYRQITDDLMNQPAVT----VTNFVRANPTLPPARTLQSRFVNELA 83 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSGGG-TTSTTHHHHHHHHHHHTGGGCCHHH----HHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHhhh-cCCCCHHHHHHHHHHhccccCCHHH----HHHHHHHCCCChhHHHHHHHHHHHHH
Confidence 467899999999999998888876 4455333222222222223334444 3455667888765433 3344566
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------
Q 002431 79 EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA----------- 147 (922)
Q Consensus 79 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----------- 147 (922)
+.++++..+..| ...|.+.......+.+....|+.++|...+..+.......+.....+-..+..
T Consensus 84 ~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~ 159 (450)
T d1qsaa1 84 RREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLE 159 (450)
T ss_dssp HTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHH
T ss_pred hccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHH
Confidence 778877655444 34677788888888999999999999988888776654444443333333333
Q ss_pred -------cCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHcC
Q 002431 148 -------QGLVQEAYSCYLEALRIQPTFA-IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDA--YLNLGNVYKALG 217 (922)
Q Consensus 148 -------~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~--~~~l~~~~~~~g 217 (922)
.|++..|...+. .-|.+. ........+.. +...... .....+.+... ....+..-....
T Consensus 160 R~~~~l~~~~~~~a~~l~~----~l~~~~~~~~~a~~~l~~---~p~~~~~----~~~~~~~~~~~~~~~~~~l~rla~~ 228 (450)
T d1qsaa1 160 RIRLAMKAGNTGLVTVLAG----QMPADYQTIASAIISLAN---NPNTVLT----FARTTGATDFTRQMAAVAFASVARQ 228 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHH----TCCGGGHHHHHHHHHHHH---CGGGHHH----HHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChhhHHHHHh----hCChhHHHHHHHHHHHHh---ChHhHHH----HHhcCCCChhhhHHHHHHHHHHhcc
Confidence 333333332221 111111 11111111111 1111111 11112222221 222233333345
Q ss_pred ChHHHHHHHHHHHhhCCC-hh----HHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 218 MPQEAIMCYQRAVQTRPN-AI----AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292 (922)
Q Consensus 218 ~~~~A~~~~~~~~~~~p~-~~----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 292 (922)
+.+.|...+.......+. .. ....++..+...+..+.+...+........+.......++ .....+++..+...
T Consensus 229 d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~ 307 (450)
T d1qsaa1 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTW 307 (450)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHH
T ss_pred ChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHHHH
Confidence 677777777776654433 22 2222333333456667777777666655444433333333 34456788877777
Q ss_pred HHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC-
Q 002431 293 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA- 371 (922)
Q Consensus 293 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 371 (922)
+..+-......+...+.+|..+...|+.++|...|..+... + ..|-.|+... .|..-. .-..-....+..
T Consensus 308 ~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~---~fYG~LAa~~--Lg~~~~---~~~~~~~~~~~~~ 378 (450)
T d1qsaa1 308 LARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-R---GFYPMVAAQR--IGEEYE---LKIDKAPQNVDSA 378 (450)
T ss_dssp HHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-C---SHHHHHHHHH--TTCCCC---CCCCCCCSCCCCH
T ss_pred HHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-C---ChHHHHHHHH--cCCCCC---CCcCCCCccHHHh
Confidence 76543333334567788888888888888888888877642 2 1232333221 121000 000000000111
Q ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002431 372 --ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432 (922)
Q Consensus 372 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 432 (922)
...-...+..+...|+..+|...+..++... +..-...++.+..+.|.++.|+....++
T Consensus 379 ~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 379 LTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 1123456778888999999999888887543 3556677888899999999998877765
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=98.01 E-value=0.0099 Score=63.01 Aligned_cols=127 Identities=9% Similarity=-0.041 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH---HHHHH
Q 002431 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS---NLASA 110 (922)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~la~~ 110 (922)
...+..+.-.+..|++.++.....++ +..|-.+..-+.............+ +...++.+|+.+.... .....
T Consensus 7 r~~y~~a~~a~~~~~~~~~~~~~~~L-~dypL~pYl~~~~l~~~~~~~~~~~----i~~Fl~~~p~~P~~~~lr~~~l~~ 81 (450)
T d1qsaa1 7 RSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPLYPYLEYRQITDDLMNQPAVT----VTNFVRANPTLPPARTLQSRFVNE 81 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTTHHHHHHHHHHHTGGGCCHHH----HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhhh-cCCCCHHHHHHHHHHhccccCCHHH----HHHHHHHCCCChhHHHHHHHHHHH
Confidence 45677788888999999888777665 4445333222222122222334433 3455666888765432 33345
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 002431 111 YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 169 (922)
Q Consensus 111 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 169 (922)
+.+.+++...+..+ ...|.+....+.++.+....|+.++|......+.......+
T Consensus 82 L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p 136 (450)
T d1qsaa1 82 LARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQP 136 (450)
T ss_dssp HHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCC
T ss_pred HHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Confidence 56677776644433 34677888888888999999999999888777766544333
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.84 E-value=0.00012 Score=63.28 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=73.9
Q ss_pred ChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----hCCHHHHHHH
Q 002431 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE----IGRVTDAIQD 394 (922)
Q Consensus 319 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~ 394 (922)
++++|+.+|+++.+.. ++.+...++. ....+.++|+++++++.+. .++.+.+.+|.+|.. ..++++|+++
T Consensus 8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~ 81 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 81 (133)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH
Confidence 3444445555444332 2233333332 2345677888888877664 567788888888776 4567888888
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 002431 395 YIRAITIRPTMAEAHANLASAYKD----SGHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 395 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 437 (922)
|+++.+. .++.+.+.||.+|.. ..+.++|.++|+++.+.+.
T Consensus 82 ~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 82 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred Hhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 8888775 356778888888877 4578888888888887653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.82 E-value=5.7e-05 Score=62.40 Aligned_cols=73 Identities=7% Similarity=-0.091 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 371 AADGLVNRGNTYKEIG---RVTDAIQDYIRAITIRPTMA-EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 371 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
...+.+.+|+++.+.. +.++|+.+++.+++.+|.+. +.++.||.+|.++|++++|+++++++++++|++..+.
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 3667778888887654 34578888888887777654 6788888888888888888888888888888877654
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=0.0006 Score=70.18 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=74.4
Q ss_pred CceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCc--chhhhHHHHHHhcCCCCccccC---
Q 002431 770 DQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEK--MATRVAGSLCLATGLGEEMIVN--- 844 (922)
Q Consensus 770 ~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~--~~~r~~~~~~~~~g~~~~~i~~--- 844 (922)
..+...++.+. ...++..+|+++. .+|++|+.||+++|+|+|..+-.. .....-+..+...|..- .+-.
T Consensus 231 ~~~~v~~f~~~--~~~lm~~adl~It---~~G~~T~~Eal~~g~P~I~iP~~~~~~~Q~~NA~~l~~~G~~~-~~~~~~~ 304 (351)
T d1f0ka_ 231 PQHKVTEFIDD--MAAAYAWADVVVC---RSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAK-IIEQPQL 304 (351)
T ss_dssp TTSEEESCCSC--HHHHHHHCSEEEE---CCCHHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTTSEE-ECCGGGC
T ss_pred ccceeeeehhh--HHHHHHhCchhhc---cccchHHHHHHHhCCceeeeecccCCchHHHHHHHHHHCCCEE-EechhhC
Confidence 55666776543 4445788999972 366799999999999999876321 12334467888889864 4422
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 845 SMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 845 ~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
+.+...+.+..+ |++.+.++++++++.. . .-..++.++.++++-
T Consensus 305 ~~e~l~~~l~~l--~~~~~~~~~~~~~~~~--~-~~~a~~i~~~i~~l~ 348 (351)
T d1f0ka_ 305 SVDAVANTLAGW--SRETLLTMAERARAAS--I-PDATERVANEVSRVA 348 (351)
T ss_dssp CHHHHHHHHHTC--CHHHHHHHHHHHHHTC--C-TTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhh--CHHHHHHHHHHHHccC--C-ccHHHHHHHHHHHHH
Confidence 345555544444 7888889999988743 1 134567777776653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.77 E-value=0.00016 Score=59.66 Aligned_cols=76 Identities=12% Similarity=0.030 Sum_probs=54.0
Q ss_pred chHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHD---YDMCIARNEEALRLEPRF-AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL 107 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 107 (922)
..++.+..|.++.+..+ .++++.+++++++.+|.+ .++++.+|..|++.|+|++|.++++++++.+|++..+....
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~ 113 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence 36677777777776543 457777777777777655 36777777777777777777777777777777776665443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.75 E-value=0.00029 Score=60.78 Aligned_cols=111 Identities=19% Similarity=0.111 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHH
Q 002431 13 GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKE----KGDIDLAIR 88 (922)
Q Consensus 13 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 88 (922)
.++++|+.+|+++.+.+ ++.+.+.++. ....++++|++.++++.+. .++.+.+.+|.+|.. ..++++|++
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence 46777888888877654 4455555553 3445677777777776654 456677777777665 446677777
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 002431 89 YYLVAIELRPNFADAWSNLASAYMR----KGRLNEAAQCCRQALALN 131 (922)
Q Consensus 89 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~ 131 (922)
+|+++.+. .++.+.+.+|.+|.. ..+.++|+++|+++.+..
T Consensus 81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 77777654 346666667776665 346667777777766544
|
| >d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=97.63 E-value=0.00064 Score=70.32 Aligned_cols=299 Identities=13% Similarity=0.111 Sum_probs=160.5
Q ss_pred ccceeeeecCCCCCChhHhhhhHHhhcCCCC-CeEEEEEecCCCCChHHHHHHHhccC--ceEE--CCCC--C-------
Q 002431 535 RRLRVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEWRQRTQSEAE--HFVD--VSAM--S------- 600 (922)
Q Consensus 535 ~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~--~------- 600 (922)
++|+|.+|.+ .-|-.-.+.++++.+.++ +|++.++.+|..-+ +.+.+..... .-++ +..- +
T Consensus 1 ~k~Ki~~v~G---tR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 75 (377)
T d1o6ca_ 1 KKLKVMTVFG---TRPEAIKMAPLVLELKKYPEIDSYVTVTAQHRQ--MLDQVLDAFHIKPDFDLNIMKERQTLAEITSN 75 (377)
T ss_dssp CCEEEEEEEC---SHHHHHHHHHHHHHGGGCTTEEEEEEECCSCGG--GTHHHHHHTTCCCSEECCCCCTTCCHHHHHHH
T ss_pred CCceEEEEEE---chHhHHHHHHHHHHHHhCCCCCEEEEEeCCCHH--HHHHHHhhcCCCCceeeecCCCCCCHHHHHHH
Confidence 4688999984 355556778999988764 69999999887532 2222222222 1122 2211 1
Q ss_pred -HHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhc------CCCceEEeccccCCCCC---CCcccE-------EEecCcc
Q 002431 601 -SDMIAKLINEDKIQILINLNGYTKGARNEIFAM------QPAPIQVSYMGFPGTTG---ASYIDY-------LVTDEFV 663 (922)
Q Consensus 601 -~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~------~~apvq~~~~g~~~t~g---~~~~d~-------~~~d~~~ 663 (922)
...+.+.+.+.++|++ -.+|.|...++. .--|| .++.-...|| .+.+|= -++|.++
T Consensus 76 ~i~~~~~~~~~~kpD~v-----~v~GDr~e~la~a~aa~~~~Ipi--~HiegG~~s~~~~~~~~de~~R~~iskls~~hf 148 (377)
T d1o6ca_ 76 ALVRLDELFKDIKPDIV-----LVHGDTTTTFAGSLAAFYHQIAV--GHVEAGLRTGNKYSPFPEELNRQMTGAIADLHF 148 (377)
T ss_dssp HHHHHHHHHHHHCCSEE-----EEETTCHHHHHHHHHHHHTTCEE--EEESCCCCCSCTTTTTTHHHHHHHHHHHCSEEE
T ss_pred HHHhhhhhhhhccccee-----EeeecccccchhhhhhhhccceE--EEEecccccccccccCchhhhccccccceeEEe
Confidence 1456788888999999 455666655542 11254 3322222233 233442 2556677
Q ss_pred CCcCcc-------CCCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCCCCC---CHHHHHHH
Q 002431 664 SPLRYA-------HIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKM---DPEIFNTW 733 (922)
Q Consensus 664 ~~~~~~-------~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~K~---~~~~~~~~ 733 (922)
++.+.. ..-.+++..+-...+..- .. ............ .+..+.+++.++.|..-. ....+...
T Consensus 149 ~~t~~~~~~L~~~G~~~~~I~~vG~~~~D~i--~~--~~~~~~~~~~~~--~~~~~~~ilvt~Hr~~~~~~~~~~~~~~~ 222 (377)
T d1o6ca_ 149 APTGQAKDNLLKENKKADSIFVTGNTAIDAL--NT--TVRDGYSHPVLD--QVGEDKMILLTAHRRENLGEPMENMFKAI 222 (377)
T ss_dssp ESSHHHHHHHHHTTCCGGGEEECCCHHHHHH--HH--HCCSSCCCSTTT--TTTTSEEEEECC----------HHHHHHH
T ss_pred ecchhhhhhhhhhccccceEeeccchhHHHH--HH--HHHHHHhhhhhh--hccCCceEEEEeccccccccchHHHHHHH
Confidence 765531 111222322221111000 00 000000011111 123455777777766522 33444555
Q ss_pred HHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCC
Q 002431 734 CNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGL 813 (922)
Q Consensus 734 ~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~ 813 (922)
..++...++..+++...+ ...++....+.-...++|.+...+++.+++.++..+++++ -++|....||-++|+
T Consensus 223 ~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~ni~~~~~l~~~~fl~llk~s~~vI----gnSss~i~Ea~~lg~ 295 (377)
T d1o6ca_ 223 RRIVGEFEDVQVVYPVHL---NPVVREAAHKHFGDSDRVHLIEPLEVIDFHNFAAKSHFIL----TDSGGVQEEAPSLGK 295 (377)
T ss_dssp HHHHHHCTTEEEEEC-------CHHHHHHHHC--CCSSEEECCCCCHHHHHHHHHHCSEEE----EC--CHHHHGGGGTC
T ss_pred Hhhccccccccccccccc---ccccchhhhhccccccceEeccccchHHHHHHHhhhheee----cccchhHHhhhhhhc
Confidence 555666776665543322 2233333333333357899999999999999999999988 455667889999999
Q ss_pred CeeeecCCc--chhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHH
Q 002431 814 PMITLPLEK--MATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQAL 866 (922)
Q Consensus 814 Pvv~~~~~~--~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~ 866 (922)
|||++...+ -.+|.. |..- ++..+.++..+.+.++..|+.....+
T Consensus 296 P~Inir~~tERqe~~~~-------g~ni-lv~~~~~~I~~~i~~~l~~~~~~~~~ 342 (377)
T d1o6ca_ 296 PVLVLRDTTERPEGVEA-------GTLK-LAGTDEENIYQLAKQLLTDPDEYKKM 342 (377)
T ss_dssp CEEEECSCCC---CTTT-------TSSE-EECSCHHHHHHHHHHHHHCHHHHHHH
T ss_pred eEEEeCCCCcCcchhhc-------CeeE-ECCCCHHHHHHHHHHHHhChHHHhhh
Confidence 999985432 222222 5444 56678888888888888888766654
|
| >d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-vancosaminyltransferase GftD species: Amycolatopsis orientalis [TaxId: 31958]
Probab=97.55 E-value=0.00043 Score=72.88 Aligned_cols=111 Identities=13% Similarity=0.069 Sum_probs=73.0
Q ss_pred CCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CC
Q 002431 769 PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NS 845 (922)
Q Consensus 769 ~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~ 845 (922)
+++|.+.+++|..+.+ ..+|+|+ ..+|.+|+.||+++|||+|.++-.. -...-+..+...|..- .+. -|
T Consensus 285 ~~~v~~~~~~p~~~ll---~~~~~~I---~hgG~~t~~Eal~~GvP~l~~P~~~-DQ~~na~~v~~~G~g~-~l~~~~~~ 356 (401)
T d1rrva_ 285 RDDCFAIDEVNFQALF---RRVAAVI---HHGSAGTEHVATRAGVPQLVIPRNT-DQPYFAGRVAALGIGV-AHDGPTPT 356 (401)
T ss_dssp CTTEEEESSCCHHHHG---GGSSEEE---ECCCHHHHHHHHHHTCCEEECCCSB-THHHHHHHHHHHTSEE-ECSSSCCC
T ss_pred CCCEEEEeccCcHHHh---hhccEEE---ecCCchHHHHHHHhCCCEEEecccc-cHHHHHHHHHHCCCEE-EcCcCCCC
Confidence 5889999998866655 4599998 4777999999999999999887542 1222344566667754 332 26
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHH
Q 002431 846 MKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERS 892 (922)
Q Consensus 846 ~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 892 (922)
++.+.+++.+++ |++.+++.+ +++++... =...+.++.+|+.
T Consensus 357 ~~~L~~ai~~vl-~~~~r~~a~-~~~~~~~~---~g~~~aa~~ie~~ 398 (401)
T d1rrva_ 357 FESLSAALTTVL-APETRARAE-AVAGMVLT---DGAAAAADLVLAA 398 (401)
T ss_dssp HHHHHHHHHHHT-SHHHHHHHH-HHTTTCCC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CHHHHHHHH-HHHHHHhh---cCHHHHHHHHHHH
Confidence 888999998888 556554433 33333311 1345555555544
|
| >d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: UDP-glucosyltransferase GtfB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=97.51 E-value=0.00062 Score=71.45 Aligned_cols=156 Identities=12% Similarity=-0.000 Sum_probs=93.1
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEE
Q 002431 714 FIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLF 793 (922)
Q Consensus 714 ~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~ 793 (922)
+++.+++... .....++...+.++..+...++..+.... ..... +++|++.++.|..+. +..+|+|
T Consensus 240 ~i~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~~~~~~~~---------~~~~~-~~nv~~~~~~p~~~~---l~~~~~~ 305 (401)
T d1iira_ 240 PVYLGFGSLG-APADAVRVAIDAIRAHGRRVILSRGWADL---------VLPDD-GADCFAIGEVNHQVL---FGRVAAV 305 (401)
T ss_dssp CEEEECC----CCHHHHHHHHHHHHHTTCCEEECTTCTTC---------CCSSC-GGGEEECSSCCHHHH---GGGSSEE
T ss_pred eEEEccCccc-cchHHHHHHHHHHHHcCCeEEEeccCCcc---------ccccC-CCCEEEEeccCHHHH---HhhcCEE
Confidence 4455555333 34455555556666666555554443221 11233 578999999886554 4559999
Q ss_pred ecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002431 794 LDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQALTNKL 870 (922)
Q Consensus 794 l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~~~~~~ 870 (922)
+ ..+|.+|+.||+++|+|+|.++-.. -...-+..+...|..- .+. -|+++..+++.++++ ++.+++.++-.
T Consensus 306 V---~hgG~~t~~Eal~~GvP~v~~P~~~-DQ~~na~~l~~~G~g~-~l~~~~~~~~~l~~ai~~~l~-~~~~~~a~~~~ 379 (401)
T d1iira_ 306 I---HHGGAGTTHVAARAGAPQILLPQMA-DQPYYAGRVAELGVGV-AHDGPIPTFDSLSAALATALT-PETHARATAVA 379 (401)
T ss_dssp E---ECCCHHHHHHHHHHTCCEEECCCST-THHHHHHHHHHHTSEE-ECSSSSCCHHHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred E---ecCCchHHHHHHHhCCCEEEccccc-cHHHHHHHHHHCCCEE-EcCcCCCCHHHHHHHHHHHhC-HHHHHHHHHHH
Confidence 8 4677999999999999999986322 1233345566667754 332 268999999999985 45554433322
Q ss_pred HhhcccCCCCChHHHHHHHHHHH
Q 002431 871 KSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
+++.. -...+-++.+++..
T Consensus 380 -~~~~~---~~~~~aa~~i~~~i 398 (401)
T d1iira_ 380 -GTIRT---DGAAVAARLLLDAV 398 (401)
T ss_dssp -HHSCS---CHHHHHHHHHHHHH
T ss_pred -HHHHh---cChHHHHHHHHHHH
Confidence 33321 23445566665543
|
| >d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-epi-vancosaminyltransferase GtfA species: Amycolatopsis orientalis [TaxId: 31958]
Probab=97.47 E-value=0.00049 Score=72.09 Aligned_cols=159 Identities=9% Similarity=-0.001 Sum_probs=95.1
Q ss_pred cEEEEecCCCC-CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 713 KFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 713 ~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
.+++.++.... +....+.......+...+...++..+.... ..... +++|.+.|++|..+.+ ..+|
T Consensus 222 ~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~-~~~v~i~~~~p~~~ll---~~a~ 288 (391)
T d1pn3a_ 222 TPVYVGFGSSSRPATADAAKMAIKAVRASGRRIVLSRGWADL---------VLPDD-GADCFVVGEVNLQELF---GRVA 288 (391)
T ss_dssp CCEEEECTTCCSTHHHHHHHHHHHHHHHTTCCEEEECTTTTC---------CCSSC-CTTCCEESSCCHHHHH---TTSS
T ss_pred CeEEEeccccccccHHHHHHHHHHHHHhcCCEEEEecccccc---------ccccC-CCCEEEecccCHHHHH---hhcc
Confidence 35666666443 445566666666677776544443322111 11233 6889999998865554 6689
Q ss_pred EEecCCCCCChhHHHHHHHcCCCeeeecCCc---chhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHH
Q 002431 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEK---MATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQA 865 (922)
Q Consensus 792 v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~---~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~ 865 (922)
+|+ ..+|.+|+.|||++|+|+|+++-.. ...+.-+..+...|..- .+. -+.+++.+++.++.+| +.+++
T Consensus 289 ~~v---~hgG~~t~~Eal~~G~P~v~~P~~~d~~~eQ~~nA~~l~~~G~g~-~l~~~~~~~~~l~~~i~~~l~~-~~r~~ 363 (391)
T d1pn3a_ 289 AAI---HHDSAGTTLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVGV-AVDGPVPTIDSLSAALDTALAP-EIRAR 363 (391)
T ss_dssp CEE---EESCHHHHHHHHHHTCCEEEECSSCCBTTBCCHHHHHHHHHTSEE-EECCSSCCHHHHHHHHHHHTST-THHHH
T ss_pred EEE---ecCchHHHHHHHHhCCcEEEeccccCCcchHHHHHHHHHHCCCEE-EcCcCCCCHHHHHHHHHHHhCH-HHHHH
Confidence 988 4577899999999999999887321 11223344555667654 332 3688999999999855 44444
Q ss_pred HHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 866 LTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
.+ ++++.+. .-..++.++.+|+..
T Consensus 364 a~-~~a~~~~---~~g~~~aa~~i~~~l 387 (391)
T d1pn3a_ 364 AT-TVADTIR---ADGTTVAAQLLFDAV 387 (391)
T ss_dssp HH-HHGGGSC---SCHHHHHHHHHHHHH
T ss_pred HH-HHHHHHH---hcCHHHHHHHHHHHH
Confidence 33 2333331 124445555555544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.45 E-value=0.029 Score=55.80 Aligned_cols=127 Identities=19% Similarity=0.204 Sum_probs=68.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID 84 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 84 (922)
.|..+.+.|.|+.|..+|..+- -+-.+..++.+.++++.|.+.+.+. ++...|..+...+.+.....
T Consensus 20 i~~~c~~~~lye~A~~lY~~~~--------d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~ 86 (336)
T d1b89a_ 20 VGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFR 86 (336)
T ss_dssp ---------CTTTHHHHHHHTT--------CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCC--------CHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHH
Confidence 4555666777777777776431 1334445666777777777766654 45566666666666665554
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002431 85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148 (922)
Q Consensus 85 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 148 (922)
-|.-. ... .-.+++-...+...|...|.+++.+.+++..+...+.+...+..++.++.+.
T Consensus 87 la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 87 LAQMC-GLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence 33111 000 1123444445566666677777777777777666666666666666666554
|
| >d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: UDP glucose:flavonoid 3-o-glucosyltransferase species: Grape (Vitis vinifera) [TaxId: 29760]
Probab=97.45 E-value=0.00076 Score=72.21 Aligned_cols=142 Identities=13% Similarity=0.106 Sum_probs=95.3
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 711 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 711 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
...+++.+++......++.++.....++..+.-.+|..+... ...+-.... ..+ +++|.+..+.|..+.+. +..+
T Consensus 264 ~~~~v~~s~gs~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~--~~~l~~~~~-~~~-~~nv~~~~~~pq~~lL~-hp~~ 338 (450)
T d2c1xa1 264 PTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKA--RVHLPEGFL-EKT-RGYGMVVPWAPQAEVLA-HEAV 338 (450)
T ss_dssp TTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGG--GGGSCTTHH-HHH-TTTEEEESCCCHHHHHT-STTE
T ss_pred ccceeeecccccccCCHHHHHHHHHHHHhcCCeEEEEECCCc--cccCChhhh-hhc-cccccccccCChHhhhc-cCce
Confidence 345788888887777788888777777776655666543221 111110000 012 57899999999888774 4668
Q ss_pred cEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHH-HhcCCCCcccc---CCHHHHHHHHHHHhcCHHH
Q 002431 791 DLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMIV---NSMKEYEERAVSLALDRQK 862 (922)
Q Consensus 791 dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~-~~~g~~~~~i~---~~~~~~~~~~~~l~~d~~~ 862 (922)
|+|+ ..+|..|+.||++.|||+|+++-..=--.. +..+ +..|+.- -+. -|.++..+++.++++|+..
T Consensus 339 ~~fI---tHGG~~s~~eal~~GvP~v~~P~~~DQ~~n-a~rv~~~~G~G~-~l~~~~~t~~~l~~ai~~vL~d~~y 409 (450)
T d2c1xa1 339 GAFV---THCGWNSLWESVAGGVPLICRPFFGDQRLN-GRMVEDVLEIGV-RIEGGVFTKSGLMSCFDQILSQEKG 409 (450)
T ss_dssp EEEE---ECCCHHHHHHHHHHTCCEEECCCSTTHHHH-HHHHHHTSCCEE-ECGGGSCCHHHHHHHHHHHHHSHHH
T ss_pred eEEE---ccCCccHHHHHHHcCCCEEecccccchHHH-HHHHHHHcCcEE-EecCCCcCHHHHHHHHHHHhcCcHH
Confidence 8887 467799999999999999998854222222 2334 3457755 332 3789999999999999753
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.40 E-value=0.03 Score=55.65 Aligned_cols=51 Identities=4% Similarity=0.023 Sum_probs=31.2
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002431 381 TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 381 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 437 (922)
...+.++..-...+++...+. ++..+...++.+|...++++. .++.++.+-
T Consensus 257 ~~~k~~~l~li~p~Le~v~~~--n~~~vn~al~~lyie~~d~~~----l~~~i~~~~ 307 (336)
T d1b89a_ 257 YFSKVKQLPLVKPYLRSVQNH--NNKSVNESLNNLFITEEDYQA----LRTSIDAYD 307 (336)
T ss_dssp HHHHTTCTTTTHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHH----HHHHHHHCC
T ss_pred HHHhcCCcHHHHHHHHHHHHc--ChHHHHHHHHHHHhCcchhHH----HHHHHHHhc
Confidence 344555666666666664443 345688888888888888644 444444443
|
| >d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: (Iso)flavonoid glycosyltransferase species: Medicago truncatula [TaxId: 3880]
Probab=97.23 E-value=0.0012 Score=70.92 Aligned_cols=143 Identities=15% Similarity=0.197 Sum_probs=96.7
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhh--HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccC
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG--EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 789 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~ 789 (922)
..+++++++................+++.+.-.+|.++..... ...+...... .. +++|.+..++|..+++. ...
T Consensus 288 ~~~v~~~~gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~-~~Nv~~~~~~Pq~~lL~-hp~ 364 (473)
T d2pq6a1 288 GSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTN-EI-ADRGLIASWCPQDKVLN-HPS 364 (473)
T ss_dssp TCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHHHH-HH-TTTEEEESCCCHHHHHT-STT
T ss_pred CceeeeccCccccccHHHHHHHHHHHHhcCCeEEEEEccCCcccccccCcccchh-hc-cCceEEeeeCCHHHHhc-CCc
Confidence 4467888888888888888888888899998888877533210 1111111111 12 57899999999887763 356
Q ss_pred CcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHH
Q 002431 790 ADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQ 861 (922)
Q Consensus 790 ~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~ 861 (922)
+++|+ +.+|..|+.||++.|||.|.++--.=--..+.-+-+.+|+.- .+. -+.++..+++.++++|+.
T Consensus 365 ~~~fI---tHGG~~s~~Eal~~GVP~lv~P~~~DQ~~na~rv~~~~G~G~-~l~~~~t~~~l~~ai~~vl~d~~ 434 (473)
T d2pq6a1 365 IGGFL---THCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGM-EIDTNVKREELAKLINEVIAGDK 434 (473)
T ss_dssp EEEEE---ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEE-ECCSSCCHHHHHHHHHHHHTSHH
T ss_pred CcEEE---ecCCccHHHHHHHcCCCEEeccchhhhHHHHHHHHHHcCeEE-eeCCCcCHHHHHHHHHHHHcCCh
Confidence 88888 467799999999999999988743222222222224445533 222 278999999999999975
|
| >d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Hydroquinone glucosyltransferase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.11 E-value=0.004 Score=66.68 Aligned_cols=144 Identities=15% Similarity=0.102 Sum_probs=92.7
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhH--------------HHHHHHHHHcCCCCCceEEcCC
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGE--------------MRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~--------------~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
..+++.+++......+..+..........+...++.++...... ..+-.-+..... +++|++.++
T Consensus 263 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~w 341 (471)
T d2vcha1 263 GSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTK-KRGFVIPFW 341 (471)
T ss_dssp TCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHTT-TTEEEEESC
T ss_pred ccccccccccccCCCHHHHHHHHHHHHhhcCCeEEEeccccccccccccccccccchhhhCCchhhhhcc-CCCeeeccc
Confidence 44677778777767777777777777777777777665432100 011111112223 478999999
Q ss_pred CCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc------CCHHHHHH
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV------NSMKEYEE 851 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~------~~~~~~~~ 851 (922)
+|..++++ +..+|+|+ +++|..|+.||+++|||+|.++--.=--..+.-+...+|+.- .+. -+.++..+
T Consensus 342 ~Pq~~lL~-hp~~~~fV---tHGG~gS~~EAl~~GvP~v~~P~~~DQ~~nA~rv~e~lG~Gv-~l~~~~~~~~t~~~l~~ 416 (471)
T d2vcha1 342 APQAQVLA-HPSTGGFL---THCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAAL-RPRAGDDGLVRREEVAR 416 (471)
T ss_dssp CCHHHHHH-STTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEE-CCCCCTTSCCCHHHHHH
T ss_pred CCHHHHhc-CccCCEEE---ecCCccHHHHHHHcCCCEEEcccccccHHHHHHHHHHheeEE-EEecCCCCcCCHHHHHH
Confidence 99988874 35688888 467799999999999999987632111122222224445433 221 27789999
Q ss_pred HHHHHhcCHH
Q 002431 852 RAVSLALDRQ 861 (922)
Q Consensus 852 ~~~~l~~d~~ 861 (922)
++.++++|++
T Consensus 417 ai~~vl~~~~ 426 (471)
T d2vcha1 417 VVKGLMEGEE 426 (471)
T ss_dssp HHHHHHTSTH
T ss_pred HHHHHhCCcH
Confidence 9999999865
|
| >d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Thermus thermophilus [TaxId: 274]
Probab=96.99 E-value=0.0058 Score=62.69 Aligned_cols=302 Identities=13% Similarity=0.097 Sum_probs=169.7
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCC-CCeEEEEEecCCCCChHHHHHHHhcc---CceEECC--CCC--------HHH
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNK-ENVEVFCYALSPNDGTEWRQRTQSEA---EHFVDVS--AMS--------SDM 603 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~--------~~~ 603 (922)
||.++.+ .-|-.-.+.++++.+++ .+||+.++.+|..-+. ..+.+.... +....+. ..+ ...
T Consensus 4 kI~~v~G---tR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~~-~~~~~~~~~i~~d~~l~~~~~~~s~~~~~~~~~~~ 79 (373)
T d1v4va_ 4 RVVLAFG---TRPEATKMAPVYLALRGIPGLKPLVLLTGQHREQ-LRQALSLFGIQEDRNLDVMQERQALPDLAARILPQ 79 (373)
T ss_dssp EEEEEEC---SHHHHHHHHHHHHHHHTSTTEEEEEEECSSCHHH-HHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHHHH
T ss_pred eEEEEEE---hhHHHHHHHHHHHHHHhCCCCCEEEEEccCChhh-hhCcchhcCCCccccCCCCCCCCCHHHHHHHHHHH
Confidence 5776664 24544567788888865 4699999888876322 222233222 1222221 112 145
Q ss_pred HHHHHHhCCCeEEEcCCCcCCCCchhhhhc------CCCceEEeccccC---CCCCCCcccE-------EEecCccCCcC
Q 002431 604 IAKLINEDKIQILINLNGYTKGARNEIFAM------QPAPIQVSYMGFP---GTTGASYIDY-------LVTDEFVSPLR 667 (922)
Q Consensus 604 ~~~~i~~~~~dil~~~~~~~~~~~~~~~~~------~~apvq~~~~g~~---~t~g~~~~d~-------~~~d~~~~~~~ 667 (922)
+.+.+.+.++|+++ ..|.|...++. .--||.=..-|.. .+.|++ |- -+++.++++.+
T Consensus 80 ~~~~l~~~kPD~vl-----v~GDr~e~la~a~aa~~~~ipi~HiegG~rsg~~~~~~~--de~~R~~iskls~~hf~~t~ 152 (373)
T d1v4va_ 80 AARALKEMGADYVL-----VHGDTLTTFAVAWAAFLEGIPVGHVEAGLRSGNLKEPFP--EEANRRLTDVLTDLDFAPTP 152 (373)
T ss_dssp HHHHHHHTTCSEEE-----EESSCHHHHHHHHHHHHTTCCEEEETCCCCCSCTTSSTT--HHHHHHHHHHHCSEEEESSH
T ss_pred HhhhhhhcCccccc-----ccccCccchhHHHHHHHhhhhheeecccccccccccCcc--hhhhhhhhccccceeeecch
Confidence 78888999999984 45555544441 2235433222221 112222 21 14566666654
Q ss_pred ccCCCccceeecC--CccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCCe
Q 002431 668 YAHIYSEKLVHVP--HCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPNS 743 (922)
Q Consensus 668 ~~~~~~e~~~~lp--~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~ 743 (922)
.. .+++..+- ...+.+.+........ ......+.....+++.+++.++.|.. +.......+...+....++.
T Consensus 153 ~~---~~~L~~~Ge~~~~I~~vG~p~~D~i~-~~~~~~~~~~~~~~~~~~lvt~hr~~n~~~~~~~~~~~~~~~~~~~~~ 228 (373)
T d1v4va_ 153 LA---KANLLKEGKREEGILVTGQTGVDAVL-LAAKLGRLPEGLPEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHL 228 (373)
T ss_dssp HH---HHHHHTTTCCGGGEEECCCHHHHHHH-HHHHHCCCCTTCCSSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTS
T ss_pred hh---hhhhhhhcccccceeecccchhhHHH-hhhhhcccccccccccceeEEeccccccchHHHHHHHHHHHhhhcccc
Confidence 31 12222221 1111111100000000 00000223344566678888888764 44566777777777778877
Q ss_pred EEEEecCC-hhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCc
Q 002431 744 ALWLLRFP-AAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEK 822 (922)
Q Consensus 744 ~l~~~~~~-~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~ 822 (922)
.+++...+ +.....+.+ .... ..++.+...+++.+++.++..+++++ -++|....||.++|+|||++...+
T Consensus 229 ~~i~p~~~~~~~~~~~~~---~~~~-~~n~~~~~~l~~~~~l~ll~~s~~vi----gnSssgi~Ea~~lg~P~Inir~~~ 300 (373)
T d1v4va_ 229 TFVYPVHLNPVVREAVFP---VLKG-VRNFVLLDPLEYGSMAALMRASLLLV----TDSGGLQEEGAALGVPVVVLRNVT 300 (373)
T ss_dssp EEEEECCSCHHHHHHHHH---HHTT-CTTEEEECCCCHHHHHHHHHTEEEEE----ESCHHHHHHHHHTTCCEEECSSSC
T ss_pred eeeeeecccccchhhhhh---hhcc-cccceeeccchHHHHHHHhhhceeEe----cccchhhhcchhhcCcEEEeCCCc
Confidence 76554322 221222222 2233 46899999999999999999999988 666888889999999999884422
Q ss_pred chhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHH
Q 002431 823 MATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTN 868 (922)
Q Consensus 823 ~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~ 868 (922)
+|.-+ +. .|..- ++..|.++....+.++..++..+..+..
T Consensus 301 --eRqeg--~~-~g~nv-lv~~d~~~I~~~i~~~l~~~~~~~~~~~ 340 (373)
T d1v4va_ 301 --ERPEG--LK-AGILK-LAGTDPEGVYRVVKGLLENPEELSRMRK 340 (373)
T ss_dssp --SCHHH--HH-HTSEE-ECCSCHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --cCHHH--Hh-cCeeE-EcCCCHHHHHHHHHHHHcCHHHHhhccc
Confidence 23221 11 26555 6677899999999899999987665444
|
| >d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Triterpene UDP-glucosyl transferase UGT71G1 species: Medicago truncatula [TaxId: 3880]
Probab=96.38 E-value=0.011 Score=62.73 Aligned_cols=153 Identities=15% Similarity=0.164 Sum_probs=88.9
Q ss_pred CcEEEEecC-CCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhh-HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccC
Q 002431 712 DKFIFACFN-QLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG-EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 789 (922)
Q Consensus 712 ~~~~~~~~~-~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~ 789 (922)
..+++.++. ......++.+......++..+...+|..+..... .+.+.... .+ ++++.+..+.+..+.+ .+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~n~~v~~~~pq~~~l-~~p~ 348 (461)
T d2acva1 274 KSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWM---EL-EGKGMICGWAPQVEVL-AHKA 348 (461)
T ss_dssp TCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCCGGGSCTTHHHHH---HH-HCSEEEESSCCHHHHH-HSTT
T ss_pred cceeeeeccccccCCCHHHHHHHHHHHHhcCccEEEEeecccccCCccchhhh---cc-CCCeEEEecCCHHHHH-hccc
Confidence 334444444 3345577777777777776665555554432110 01111111 12 4667777776655544 5788
Q ss_pred CcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---------CCHHHHHHHHHHHhc-C
Q 002431 790 ADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---------NSMKEYEERAVSLAL-D 859 (922)
Q Consensus 790 ~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---------~~~~~~~~~~~~l~~-d 859 (922)
+|+|+ +++|..|+.||++.|||+|+++--.=--..+.-+....|+.- .+. -+.++..+++.++++ |
T Consensus 349 ~~~fI---tHGG~gs~~eAl~~GVP~l~~P~~~DQ~~nA~rlve~~G~G~-~l~~~~~~~~~~~t~~~l~~a~~~vl~~d 424 (461)
T d2acva1 349 IGGFV---SHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGL-GLRVDYRKGSDVVAAEEIEKGLKDLMDKD 424 (461)
T ss_dssp EEEEE---ECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEE-ESCSSCCTTCCCCCHHHHHHHHHHHTCTT
T ss_pred CCEEE---ecCCccHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceE-EeeccccccCCccCHHHHHHHHHHHhhCC
Confidence 99998 467799999999999999998743211122222224444432 221 378899999999996 4
Q ss_pred HHHHHH---HHHHHHhh
Q 002431 860 RQKLQA---LTNKLKSV 873 (922)
Q Consensus 860 ~~~~~~---~~~~~~~~ 873 (922)
+..|++ +++.+|+.
T Consensus 425 ~~~r~~a~~l~~~~r~a 441 (461)
T d2acva1 425 SIVHKKVQEMKEMSRNA 441 (461)
T ss_dssp CTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 545443 44444443
|
| >d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: ADP-heptose LPS heptosyltransferase II domain: ADP-heptose LPS heptosyltransferase II species: Escherichia coli [TaxId: 562]
Probab=95.46 E-value=0.024 Score=57.58 Aligned_cols=82 Identities=6% Similarity=-0.119 Sum_probs=54.6
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCC--CCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeec
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGV--QPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP 819 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~--~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~ 819 (922)
+..++++|.+.. .+........... ...-+.+.|..+-.+..++++.+|+++.+- +..+==|.++|+|+|++-
T Consensus 213 ~~~ivl~g~~~e-~~~~~~~~~~~~~~~~~~~~~l~g~~sl~el~~li~~a~l~I~~D----tg~~HlAaa~g~p~i~lf 287 (348)
T d1pswa_ 213 GYQVVLFGSAKD-HEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTND----SGLMHVAAALNRPLVALY 287 (348)
T ss_dssp TCEEEECCCGGG-HHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEES----SHHHHHHHHTTCCEEEEE
T ss_pred CCccccccccch-HHHHHHHHHhhhcccccccccccCCccHHHHHHHHhcceeEeecC----ccHHHHHHHcCCCEEEEE
Confidence 456677775433 4333333222211 023366788889999999999999998332 344567999999999999
Q ss_pred CCcchhhhH
Q 002431 820 LEKMATRVA 828 (922)
Q Consensus 820 ~~~~~~r~~ 828 (922)
|++-..+.+
T Consensus 288 g~~~~~~~~ 296 (348)
T d1pswa_ 288 GPSSPDFTP 296 (348)
T ss_dssp SSSCTTSSC
T ss_pred CCCCHhhhC
Confidence 887776654
|
| >d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.11 Score=52.76 Aligned_cols=302 Identities=13% Similarity=0.073 Sum_probs=158.6
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCC-CeEEEEEecCCCCChHHHHHHHhcc---CceEECCC--CCH--------H
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEWRQRTQSEA---EHFVDVSA--MSS--------D 602 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~--------~ 602 (922)
|||.+|.+ .-|-.-.+.++++.+..+ .||+.++.++...+ -..+.++... +....+.. .+. .
T Consensus 1 MKi~~v~G---tR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 76 (376)
T d1f6da_ 1 MKVLTVFG---TRPEAIKMAPLVHALAKDPFFEAKVCVTAQHRE-MLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILE 76 (376)
T ss_dssp CEEEEEEC---SHHHHHHHHHHHHHHHHCTTCEEEEEECCTTGG-GGHHHHHHTTCCCSEECCCCSSSSCHHHHHHHHHH
T ss_pred CeEEEEEE---hhHhHHHHHHHHHHHHhCCCCCEEEEEcCCCHH-HHHHHHHhcCCCCCcccccCCCCCCHHHHHHHHHH
Confidence 46667763 344445677788776443 59998888876532 1122223322 12222221 121 3
Q ss_pred HHHHHHHhCCCeEEEcCCCcCCCCchhhhhcCC----CceEEeccccCCCCC-C--CcccE-------EEecCccCCcCc
Q 002431 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQP----APIQVSYMGFPGTTG-A--SYIDY-------LVTDEFVSPLRY 668 (922)
Q Consensus 603 ~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~~~----apvq~~~~g~~~t~g-~--~~~d~-------~~~d~~~~~~~~ 668 (922)
.+.+.+.+.++|++ -.+|.|...++-=. --+-+.++.-...|| + +..|- -++|-++++.+.
T Consensus 77 ~~~~~~~~~kPD~v-----~v~GDr~e~la~a~aa~~~~ipi~HiegG~~s~~~~~~~pde~~R~~iskls~~hf~~~~~ 151 (376)
T d1f6da_ 77 GLKPILAEFKPDVV-----LVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTET 151 (376)
T ss_dssp HHHHHHHHHCCSEE-----EEETTCHHHHHHHHHHHTTTCCEEEESCCCCCSCTTSSTTHHHHHHHHHHTCSEEEESSHH
T ss_pred hhHHHHHhccCcce-----eeeccccchhhHHHHHHhhCceEEEEecccccccccccCchhhhhhhhccceeEEEeccHH
Confidence 46778888999998 45566665554211 133333332222222 2 22331 255666666543
Q ss_pred cCCCccceeecCC--ccccCCCccccc------cCCCCCC---C-C-CcCCCCCCCCcEEEEecCCCC---CCCHHHHHH
Q 002431 669 AHIYSEKLVHVPH--CYFVNDYKQKNM------DVLDPNC---Q-P-KRSDYGLPEDKFIFACFNQLY---KMDPEIFNT 732 (922)
Q Consensus 669 ~~~~~e~~~~lp~--~~~~~~~~~~~~------~~~~~~~---~-~-~r~~~~l~~~~~~~~~~~~~~---K~~~~~~~~ 732 (922)
. .++|..+-. ..+.+.+..... ....... . . .......+++.+++.++.|.. +....++.+
T Consensus 152 ~---~~~L~~~G~~~~~I~~vG~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvt~H~~~~~~~~~~~i~~~ 228 (376)
T d1f6da_ 152 S---RQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHA 228 (376)
T ss_dssp H---HHHHHHTTCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEECCCCBSSCCHHHHHHHHH
T ss_pred H---HhHHHhcCCCccccceecCchHHHHHHHHhhhhccchhhhhhhccccccCCCCceEEEecccchhhhhhHHHHHHH
Confidence 1 123322211 111111110000 0000000 0 0 111111234557778888654 223444555
Q ss_pred HHHHHhhCCCeEEEEecCC-hhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHc
Q 002431 733 WCNILRRVPNSALWLLRFP-AAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWA 811 (922)
Q Consensus 733 ~~~il~~~p~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~ 811 (922)
...+.....+..+++...+ +.....+.. ..+- ..++.+.+..++.+++.++..+++++ -++|....||-+.
T Consensus 229 l~~~~~~~~~~~ii~p~~~~~~~~~~~~~---~~~~-~~ni~~~~~l~~~~fl~ll~~a~~vi----gnSssgi~Ea~~l 300 (376)
T d1f6da_ 229 LADIATTHQDIQIVYPVHLNPNVREPVNR---ILGH-VKNVILIDPQEYLPFVWLMNHAWLIL----TDSGGIQEEAPSL 300 (376)
T ss_dssp HHHHHHHCTTEEEEEECCBCHHHHHHHHH---HHTT-CTTEEEECCCCHHHHHHHHHHCSEEE----ESSSGGGGTGGGG
T ss_pred HhhhhhhcceeEEecccccchhhhhhHhh---hhcc-cccceeeccccHHHHHHHHhhceEEE----ecCcchHhhHHHh
Confidence 5555556666555443322 221222222 2233 47899999999999999999999988 4446677799999
Q ss_pred CCCeeeecC-CcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHH
Q 002431 812 GLPMITLPL-EKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQA 865 (922)
Q Consensus 812 g~Pvv~~~~-~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~ 865 (922)
|+|||++.. ....+++.. |-.- ++..+.++..+.+.+...++..+..
T Consensus 301 g~P~Inir~~ter~~~~~~------g~~i-~v~~~~~~I~~ai~~~l~~~~~~~~ 348 (376)
T d1f6da_ 301 GKPVLVMRDTTERPEAVTA------GTVR-LVGTDKQRIVEEVTRLLKDENEYQA 348 (376)
T ss_dssp TCCEEECSSCCSCHHHHHH------TSEE-ECCSSHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCEEEcCCCccCccceec------CeeE-ECCCCHHHHHHHHHHHHhChHhhhh
Confidence 999998843 223344332 5444 5667889999888888888765544
|
| >d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]
Probab=86.52 E-value=4.6 Score=33.38 Aligned_cols=107 Identities=10% Similarity=0.070 Sum_probs=68.8
Q ss_pred EEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccC---------CcE-EecC-CCCCChhHHHHHHH--
Q 002431 744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL---------ADL-FLDT-PLCNAHTTGTDILW-- 810 (922)
Q Consensus 744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~---------~dv-~l~~-~~~~g~~t~~eal~-- 810 (922)
+++++.+.+.....++..+++.|.. -+|.... +..+-+.++.. -|+ ++|- .|...|..++..+-
T Consensus 4 rILiVDD~~~~~~~l~~~L~~~g~~-~~v~~a~--~g~eAl~~l~~~~~~~~~~~pdlillD~~mP~~dG~el~~~ir~~ 80 (140)
T d1k68a_ 4 KIFLVEDNKADIRLIQEALANSTVP-HEVVTVR--DGMEAMAYLRQEGEYANASRPDLILLDLNLPKKDGREVLAEIKSD 80 (140)
T ss_dssp EEEEECCCHHHHHHHHHHHHTCSSC-CEEEEEC--SHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHS
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCC-eEEEEEC--CHHHHHHHHHHhHHhhccCCCCEEEEeeccccccChHHHHHHHhC
Confidence 6788888877778888889988873 4566543 24555555432 244 4666 56666999887664
Q ss_pred ---cCCCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHH
Q 002431 811 ---AGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSL 856 (922)
Q Consensus 811 ---~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l 856 (922)
.++|||.+.+....+.+-. ...+|..+ ++.. +.+++.+.+.++
T Consensus 81 ~~~~~iPvI~ls~~~~~~~~~~--a~~~Ga~~-yl~KP~~~~~L~~~i~~i 128 (140)
T d1k68a_ 81 PTLKRIPVVVLSTSINEDDIFH--SYDLHVNC-YITKSANLSQLFQIVKGI 128 (140)
T ss_dssp TTGGGSCEEEEESCCCHHHHHH--HHHTTCSE-EEECCSSHHHHHHHHHHH
T ss_pred cccCCCcEEEEeCCCCHHHHHH--HHHCCCCE-EEECCCCHHHHHHHHHHH
Confidence 4799998877644443321 22458888 7764 566666555443
|
| >d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Oligosaccharide phosphorylase domain: Glycogen phosphorylase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=85.62 E-value=3.2 Score=45.22 Aligned_cols=111 Identities=14% Similarity=0.113 Sum_probs=66.4
Q ss_pred CCCCCcEEEEecCCCC--CCCHH----HHHHHHHHHhhCCC-----eEEEEecCC-hhh--HHHHHHHHHHc----CCC-
Q 002431 708 GLPEDKFIFACFNQLY--KMDPE----IFNTWCNILRRVPN-----SALWLLRFP-AAG--EMRLRAYAVAQ----GVQ- 768 (922)
Q Consensus 708 ~l~~~~~~~~~~~~~~--K~~~~----~~~~~~~il~~~p~-----~~l~~~~~~-~~~--~~~l~~~~~~~----g~~- 768 (922)
.++++.++.|-+-|+. |...- .+..+.+|.+ .|+ ..+++.|.. |.. ...+.+.+.+. .-+
T Consensus 545 ~ldp~~lfd~~arRfheYKRq~Ln~~~i~~ly~rlk~-~~~~~~~P~q~IFaGKAhP~d~~gK~iIk~I~~va~~in~dp 623 (824)
T d2gj4a1 545 HINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK-EPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDP 623 (824)
T ss_dssp CCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHH-CTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCT
T ss_pred CCCcchhhhhheeechhhhhhhhhHhhHHHHHHHhhh-cccCCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCh
Confidence 3566777777666664 77544 3344455543 333 456666632 211 12232322221 111
Q ss_pred --CC--ceEEcCC--CCcHHHHHhccCCcEEecCC--CCCC-hhHHHHHHHcCCCeee-ecCC
Q 002431 769 --PD--QIIFTDV--AMKQEHIRRSSLADLFLDTP--LCNA-HTTGTDILWAGLPMIT-LPLE 821 (922)
Q Consensus 769 --~~--rv~f~~~--~~~~~~~~~~~~~dv~l~~~--~~~g-~~t~~eal~~g~Pvv~-~~~~ 821 (922)
.+ +|+|++- +...+++ ...+||.+.++ |.+. ||+-+=++.-|+|.+. ++|-
T Consensus 624 ~~~~~lkVvFlenY~v~lA~~l--i~g~Dvwln~p~~~~EASGTSgMK~alNGal~lstlDGw 684 (824)
T d2gj4a1 624 VVGDRLRVIFLENYRVSLAEKV--IPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGA 684 (824)
T ss_dssp TTGGGEEEEEETTCCHHHHHHH--GGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTT
T ss_pred hhccceeEEEcCCCchHHHHHh--hhhhhhhhcCCCCCcccCCcchhHHHHcCCeeeccccch
Confidence 12 6899984 2334555 89999999884 6777 9999999999999994 4443
|
| >d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=85.41 E-value=4.9 Score=33.11 Aligned_cols=107 Identities=15% Similarity=0.062 Sum_probs=69.5
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecC-CCCCChhHHHHHHH-----cCC
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDT-PLCNAHTTGTDILW-----AGL 813 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~-~~~~g~~t~~eal~-----~g~ 813 (922)
++++|+.+.+..++.+...+.+.|.. |....- ..+-+... ...|++ +|- .|...|..+++.+. ..+
T Consensus 2 arILiVDD~~~~~~~l~~~L~~~g~~---v~~a~~--~~eal~~~~~~~~dlil~D~~~p~~~G~~~~~~ir~~~~~~~~ 76 (139)
T d1w25a1 2 ARILVVDDIEANVRLLEAKLTAEYYE---VSTAMD--GPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHI 76 (139)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCE---EEEESS--HHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTS
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCE---EEEEcc--chhhhhhhhcccceeeeeeccccCCCchHHHHHhhhcccccCC
Confidence 67888988887788999999999973 554432 33333322 346666 454 45555887776554 578
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
|||.+.+..-....- . ...+|..+ ++.. +.+++...+..+.
T Consensus 77 piI~lt~~~~~~~~~-~-a~~~Ga~d-yl~KP~~~~~L~~~i~~~l 119 (139)
T d1w25a1 77 PVVLITALDGRGDRI-Q-GLESGASD-FLTKPIDDVMLFARVRSLT 119 (139)
T ss_dssp CEEEEECSSCHHHHH-H-HHHHTCCE-EEESSCCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHH-H-HHHcCCCE-EEECCCCHHHHHHHHHHHH
Confidence 999887764444332 1 22459999 8864 7777777665554
|
| >d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) species: Acetobacter aceti [TaxId: 435]
Probab=82.18 E-value=8.4 Score=32.13 Aligned_cols=132 Identities=12% Similarity=0.116 Sum_probs=76.1
Q ss_pred EEecCChhh--HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc-----cCCcEEecCCCCCChhHHHHHHHcCCCeeee
Q 002431 746 WLLRFPAAG--EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS-----SLADLFLDTPLCNAHTTGTDILWAGLPMITL 818 (922)
Q Consensus 746 ~~~~~~~~~--~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~-----~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~ 818 (922)
+|.|+..+. -+.....++++||+-+..+..++........+. +.+||++-----+++...+=|-..-+|||..
T Consensus 7 IimGS~SD~~v~~~a~~~L~~~gI~~e~~v~SAHR~p~~l~~~~~~~e~~~~~viIa~AG~aaaLpgvva~~t~~PVIgv 86 (159)
T d1u11a_ 7 IIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAWTRLPVLGV 86 (159)
T ss_dssp EEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSSCEEEE
T ss_pred EEeCCHhhHHHHHHHHHHHHHhCCceEEEEehHhhChHHHHHHHHHHHhcCCeEEEEEecCCCCCccceeeecceeEEEe
Confidence 445654331 245566788999964444444444444444333 4578887666667778888888888999988
Q ss_pred cCCcchhhhHHHHHHhcCCCCc----cccCCHH------HHHHHHHHHhcCHHHHHHH---HHHHHhhcccCC
Q 002431 819 PLEKMATRVAGSLCLATGLGEE----MIVNSMK------EYEERAVSLALDRQKLQAL---TNKLKSVRLTCP 878 (922)
Q Consensus 819 ~~~~~~~r~~~~~~~~~g~~~~----~i~~~~~------~~~~~~~~l~~d~~~~~~~---~~~~~~~~~~~~ 878 (922)
+-..-...-..+++..+.+|.. .++-+.+ -++..++.+ .|++.++++ |+++++.+...|
T Consensus 87 P~~~~~~~g~d~l~S~~qMP~g~pv~tv~vg~~~~~nAa~~A~~IL~~-~d~~l~~kl~~~r~~~~~~v~~~p 158 (159)
T d1u11a_ 87 PVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAKNAALLAASILAL-YNPALAARLETWRALQTASVPNSP 158 (159)
T ss_dssp EECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHGG-GCHHHHHHHHHHHHHHHHHSCSSC
T ss_pred ccccccccccccHHHHhhCcCCCCceEEEecCCchHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhhcC
Confidence 7554333334566666655551 2222222 123333332 488876666 666666665544
|
| >d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Oligosaccharide phosphorylase domain: Maltodextrin phosphorylase (MALP) species: Escherichia coli [TaxId: 562]
Probab=81.49 E-value=8.3 Score=41.77 Aligned_cols=110 Identities=12% Similarity=0.005 Sum_probs=64.9
Q ss_pred CCCCcEEEEecCCCC--CCCHHHH----HHHHHHHhhCCC-----eEEEEecCC-hh---hHHHHH---HHHHHc----C
Q 002431 709 LPEDKFIFACFNQLY--KMDPEIF----NTWCNILRRVPN-----SALWLLRFP-AA---GEMRLR---AYAVAQ----G 766 (922)
Q Consensus 709 l~~~~~~~~~~~~~~--K~~~~~~----~~~~~il~~~p~-----~~l~~~~~~-~~---~~~~l~---~~~~~~----g 766 (922)
|+++.+++|-.-|+. |...-.+ +... +++..|+ ..+++.|.. |. +++-++ +.++.. -
T Consensus 522 ldp~~LtigfaRRfa~YKR~~L~~~~i~~l~~-~l~~~~~~~~~Pvq~IfaGKAhP~d~~gK~iIk~I~~va~~in~dp~ 600 (796)
T d1l5wa_ 522 INPQAIFDIQIKRLHEYKRQHLNLLHILALYK-EIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPL 600 (796)
T ss_dssp CCTTSEEEEEESCCCGGGTHHHHHHHHHHHHH-HHHTCTTCCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred cChhhccchhhhhhhhhhcccchhhhHHHHHH-HHhcCcccCCCceEEEEcCCCCCchHHHHHHHHHHHHHHHHhcCChh
Confidence 556777777776664 7755422 2223 3444432 566777642 21 122222 222211 1
Q ss_pred CC-CCceEEcCCCC--cHHHHHhccCCcEEecCC--CCCC-hhHHHHHHHcCCCeeeecCC
Q 002431 767 VQ-PDQIIFTDVAM--KQEHIRRSSLADLFLDTP--LCNA-HTTGTDILWAGLPMITLPLE 821 (922)
Q Consensus 767 ~~-~~rv~f~~~~~--~~~~~~~~~~~dv~l~~~--~~~g-~~t~~eal~~g~Pvv~~~~~ 821 (922)
+. .-||+|++--. ..+++ ...+||-+.++ |.+. ||+.+=|+.-|+|.++.-..
T Consensus 601 ~~~~~kVVFlenYdv~lA~~l--v~g~DVwln~p~~p~EASGTSgMKaalNG~lnlstlDG 659 (796)
T d1l5wa_ 601 VGDKLKVVFLPDYCVSAAEKL--IPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDG 659 (796)
T ss_dssp TGGGEEEEECSSCCHHHHHHH--GGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCT
T ss_pred hccceeEEEeCCCchHHHHHH--hcccchhhhCCCCCcccCCchHHHHHHcCCeeeecccc
Confidence 10 12799998422 34444 89999999884 7777 99999999999999954433
|
| >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Sinorhizobium meliloti, CheY2 [TaxId: 382]
Probab=81.32 E-value=7.6 Score=31.34 Aligned_cols=108 Identities=10% Similarity=0.032 Sum_probs=68.8
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc--CCcEE-ecC-CCCCChhHHHHHH-----HcCC
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS--LADLF-LDT-PLCNAHTTGTDIL-----WAGL 813 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~--~~dv~-l~~-~~~~g~~t~~eal-----~~g~ 813 (922)
.+++++-+.+..+..+...+.+.|.. .|....- ..+-+..+. ..|++ +|- .|...|..+++.+ +..+
T Consensus 7 ~kILiVDD~~~~~~~l~~~L~~~g~~--~v~~a~~--~~~al~~l~~~~~dlii~D~~mP~~~G~el~~~lr~~~~~~~~ 82 (129)
T d1p6qa_ 7 IKVLIVDDQVTSRLLLGDALQQLGFK--QITAAGD--GEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKA 82 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCS--CEECCSS--HHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCe--EEEEECC--HHHHHHHHHhCCCCeEEeeeecCCCChHHHHHHHHhCcccCCC
Confidence 46788888877788889999998883 3544432 344444432 34655 565 5666699999887 4579
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
|||.+.+..-.+..- -...+|..+ ++.. +.+++.+++.++.
T Consensus 83 pii~lt~~~~~~~~~--~a~~~G~~~-~l~KP~~~~~L~~~i~~vl 125 (129)
T d1p6qa_ 83 AFIILTAQGDRALVQ--KAAALGANN-VLAKPFTIEKMKAAIEAVF 125 (129)
T ss_dssp EEEECCSCCCHHHHH--HHHHHTCSC-EECCCSSHHHHHHHHHHHH
T ss_pred eEEEEEecCCHHHHH--HHHHCCCCE-EEECCCCHHHHHHHHHHHH
Confidence 999776653333222 233458888 7764 6667666655543
|