Citrus Sinensis ID: 002432

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920--
Protein Sequence
MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHDVAILIACGEQKEFLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLNDLEYLWIPNSKMGDSILQNLEILKTVARS
Secondary Structure (PSIPRED)
cccccEEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccHHHHHcccccccccHHHHHHHHHccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccEEEEcHHHHHHHHHHHcccccEEEEEccccccccccccEEEEEEEEEEccccccccccccccccEEEccccccccccccccHHHHcccccEEEEEccccccccccccccccccccEEEcccccccccccccccccccccccccccccccHHHHcccccccEEEccccccccccccccccccccccEEEcccccccEEEccccccccccccccccccccccccEEEEEEEcccccccccccccccccEEEEccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccEEEcccccccEEccccccccccccccEEEEEcccccEEEccccccccccccccccEEEEcccccccEEccccccccccccccEEEEEcccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEEcccccEEcccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccEEccccccccccccEEEcccccccccccccccccccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccHHHHHEcHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcHHccccccccEEEHHHHHHHHHHHHHccccEEEEEEccccccccccccccEEEEEEEccccccccccccccccccEEEEccccccccccccHHHHHHccccEEEEccccccccccccccccccccEEEEcccccccccccccccccEEEEEcccccccccccHcccccccEEEEccccccEEccccHHHcccccEEEEEccccccEcccccccccccccccHHHHccccHcccEEEcccccccccccccHHHHHHHHHHccccccccHHHHcHHHcHcccccccHcHHHHHHHccccccccEEEEcccccccccHHccccccccccccccEEEccccccccEccccccccHHccccccccccccccccccEEEEcccccccEccccccccccccccEEEEEcccHcHHHcccccccccccccEEEEEccccccccccccccccHHcccccccccccccccccEEEccccccHcccccccccccccHHHHHcccccccccEEEEcccccccccccccccccccccEEEEcccccHHccccccHHcccccccEEEEcccccccEccccccccccccccccccccEEEcccccccccccccccccccccccEEEEcccccccccccccccccHHHHHEccccccccHccccccccccEEEEcccccEEccccccccccccccccEEEEEcccccccccHHHcccccccEEEEEccccHHHcccccccccccEEEEcccccHHHcccccccccccHccEEEEEEccccc
Coil and Loop (DISEMBL)
MGSEANFSIEILNEEEAWRLFEVKlgnddliprmKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHelrmptennfhRELGKAYTAIKLSYDALKGEQLKKIFQLCslmpksffasDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSClllegyscrefsmhdVVHDVAILIACGEQKEFlvrngdvwewpdedalkkcyaiswidssggelpeglecpqlELLLLssehssvdvnipqrfftgmrelkvvdltnmqlfslpsSIDLLVNLQTLCldystlgditiigklknlEILSLIESDIVEFPEELGKLtklrlldltncfhlkviapnVIASFTRLEELYMSncfvewkvedegssskkskasldelmplprlttLEIAVendnalpegfFVRELERFKIligdrsfeppvilskdwfrisrshFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLvqnnpdllfivdsreivdcdafpLLELLSLQNLINLKRICvdrlstesfselrtmkvencdelSNIFVLsttkclpslQRIAVIKCNKMKEIFaiggeepdvvdnnnaiENIEFAQIRYLslgnlpelksfccevkgpsmppslfngkvvlpnleaLELCEINVKSiwhnqtpccfqrlTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQViiseggpgqeppcfafrrvtnislchlpeltclypglhtsewpelkkleVFSCdklntfasesfsfhsnekkqlhvpkqpffsfekIFPNLEELGLSIKDIMMLLqgdfpqdhlfgslkdlevrdddsasvpigllekfhglenlnlsfcSYKELfsnggqvhlIKKLELICLNdleylwipnskmgdsILQNLEILKTVARS
Flexible Loop (DISEMBL)
MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHDVAILIACGEQKEFLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVedegssskkskasldelmplpRLTTLEIAVENDNALPEGFFVRELERFKiligdrsfeppVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVlsttkclpsLQRIAVIKCNKMKEIFAiggeepdvvdNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLNDLEYLWIPNSKMGDSILQNLEILKTVARS
Low Complexity Region (SEG)
MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHDVAILIACGEQKEFLVRNGDVWEWPDEDALKKCYAISWIDssggelpeglecpqlellllssehssVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEElgkltklrlldltNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPllellslqnlinlKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLNDLEYLWIPNSKMGDSILQNLEILKTVARS
Disordered region (IsUnstruct)
******FSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHDVAILIACGEQKEFLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKV*******************LPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFH*****QLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLNDLEYLWIPNSKMGDSILQNLEILK*****
Disordered Region (DISOPRED)
**SEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMP******RELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHDVAILIACGEQKEFLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIA***IASFTRLEELYMSNCFVEWKVEDEGSS*******LDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFA*************AIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIIS**********FAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFA**************HVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQ***P**HLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSN*****LIKKLELICLNDLEYLWIP***MGDSILQNLEILKTVAR*
Disordered Region (DISEMBL)
MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHDVAILIACGEQKEFLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWK************ASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLNDLEYLWIPNSKMGDSILQNLEILKTVARS
Disordered Region (DISPRO)
****ANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHDVAILIACGEQKEFLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEP**VDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLNDLEYLWIPNSKMGDSILQNLEILKTVA**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHDVAILIACGEQKEFLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLNDLEYLWIPNSKMGDSILQNLEILKTVARS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	922	2.2.26 [Sep-21-2011]
O81825	919	Probable disease resistan	yes	no	0.661	0.663	0.291	3e-49
Q9T048	985	Disease resistance protei	no	no	0.636	0.595	0.269	2e-43
Q42484	909	Disease resistance protei	no	no	0.398	0.403	0.304	5e-34
Q9SH22	884	Probable disease resistan	no	no	0.374	0.390	0.306	4e-25
Q9LVT4	843	Probable disease resistan	no	no	0.392	0.429	0.284	8e-25
Q940K0	889	Probable disease resistan	no	no	0.329	0.341	0.319	1e-24
Q8RXS5	888	Probable disease resistan	no	no	0.351	0.364	0.324	2e-24
Q9SI85	893	Probable disease resistan	no	no	0.353	0.365	0.318	1e-23
O64973	889	Disease resistance protei	no	no	0.375	0.389	0.295	8e-22
O82484	892	Putative disease resistan	no	no	0.357	0.369	0.307	2e-21

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score =  197 bits (502), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 199/682 (29%), Positives = 313/682 (45%), Gaps = 72/682 (10%)

Query: 1   MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALR 60
           M +  N  +  L E+EAW LF   +G       +K  A  +  EC GLP+AI  I + LR
Sbjct: 261 MMTNENIKVACLQEKEAWELFCHNVGEVANSDNVKPIAKDVSHECCGLPLAIITIGRTLR 320

Query: 61  NKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSF 120
            K + E WK+ L+ L+    +    E  K +  +KLSYD L+ + +K  F  C+L P+ +
Sbjct: 321 GKPQVEVWKHTLNLLKRSAPSIDTEE--KIFGTLKLSYDFLQ-DNMKSCFLFCALFPEDY 377

Query: 121 F--ASDLFKYCIGLGIFRGID-MEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHD 177
               S+L  Y +  G+  G    ED  N+  TLV  LKDSCLL +G SC    MHDVV D
Sbjct: 378 SIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKMHDVVRD 437

Query: 178 VAI--LIACGEQKEFLVRNG-DVWEWPDEDALKKCYAISWIDSSGGELP----EGLECPQ 230
            AI  + + GE    LV  G  + E+P +  +     +S + +    LP    EG+E   
Sbjct: 438 FAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNVIEGVET-- 495

Query: 231 LELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCL-DYS 289
           L LLL  + H      +P  F      L+++DL+ +++ +LP S   L +L++L L +  
Sbjct: 496 LVLLLQGNSHVK---EVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCK 552

Query: 290 TLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFT 349
            L ++  +  L  L+ L L ES I E P  L  L+ LR + ++N + L+ I    I   +
Sbjct: 553 KLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLS 612

Query: 350 RLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGF--FV 407
            LE L M+     W ++ E    ++ +A+LDE+  LP L  L I + +  +    F    
Sbjct: 613 SLEVLDMAGSAYSWGIKGE---EREGQATLDEVTCLPHLQFLAIKLLDVLSFSYEFDSLT 669

Query: 408 RELERFKILIGD-RSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQ 466
           + L +F+ L    RS  PP    +    IS           + +    + W       LQ
Sbjct: 670 KRLTKFQFLFSPIRSVSPPGT-GEGCLAIS----------DVNVSNASIGWL------LQ 712

Query: 467 GIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLL 526
            +  ++    +   G+   L       F  +K L +   P L            D FP L
Sbjct: 713 HVTSLDLNYCEGLNGMFENLVTKSKSSFVAMKALSIHYFPSLSLASGCES--QLDLFPNL 770

Query: 527 ELLSLQNLINLKRIC-VDRLSTESFSELRTMKVENCDELSNIF---VLSTTKCLPSLQRI 582
           E LSL N +NL+ I  ++        +L+ ++V  C +L  +F   +L+ T  LP+LQ I
Sbjct: 771 EELSLDN-VNLESIGELNGFLGMRLQKLKLLQVSGCRQLKRLFSDQILAGT--LPNLQEI 827

Query: 583 AVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMP 642
            V+ C +++E+F       D        E++   ++  + L  LP+L+S C         
Sbjct: 828 KVVSCLRLEELFNFSSVPVDF-----CAESL-LPKLTVIKLKYLPQLRSLC--------- 872

Query: 643 PSLFNGKVVLPNLEALEL--CE 662
               N +VVL +LE LE+  CE
Sbjct: 873 ----NDRVVLESLEHLEVESCE 890

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score =  178 bits (452), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 179/663 (26%), Positives = 313/663 (47%), Gaps = 76/663 (11%)

Query: 1   MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALR 60
           M ++ +  ++ L EE+AW LF    G+      ++  A  + +ECGGLP+AI  +  A+R
Sbjct: 291 MKTDLDVRVDCLLEEDAWELFCKNAGDVVRSDHVRKIAKAVSQECGGLPLAIITVGTAMR 350

Query: 61  NKTESECWKNALHEL--RMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPK 118
            K   + W + L +L   +P   +      K +  +KLSYD L+ ++ K  F LC+L P+
Sbjct: 351 GKKNVKLWNHVLSKLSKSVPWIKSIEE---KIFQPLKLSYDFLE-DKAKFCFLLCALFPE 406

Query: 119 SFF--ASDLFKYCIGLGIFRGI-DMEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVV 175
            +    +++ +Y +  G    +   ED+ N+  T V  LKD CLL +G       MHDVV
Sbjct: 407 DYSIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHDVV 466

Query: 176 HDVAILIACGEQKE--FLVRNGDVWEWPDEDALK-KCYAISWIDSSGGELPEGLE--CPQ 230
            D AI I    Q +   LV +G   +   +D L      +S +++    LP+ +E  C +
Sbjct: 467 RDFAIWIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFCVK 526

Query: 231 LELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCL-DY 288
             +LLL       +V  P  F      L++++L+  ++ S PS S+  L +L +L L D 
Sbjct: 527 TSVLLLQGNFLLKEV--PIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDC 584

Query: 289 STLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASF 348
             L  +  +  L  LE+L L  + I+EFP  L +L + R LDL+   HL+ I   V++  
Sbjct: 585 FKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSRL 644

Query: 349 TRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL--PEGFF 406
           + LE L M++    W V+ E   ++K +A+++E+  L RL  L I + +   L      +
Sbjct: 645 SSLETLDMTSSHYRWSVQGE---TQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKRNTW 701

Query: 407 VRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQ 466
           ++ L++F++++G R                  + L   H   R+    LN   + +  L 
Sbjct: 702 IKRLKKFQLVVGSR------------------YILRTRHDKRRLTISHLNVSQVSIGWL- 742

Query: 467 GIRKVEYLCLDKFQGVKNILFEL--DTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFP 524
            +     L L+  QG++ ++ +L  D +GF  LK L ++N      I+++   V+  +  
Sbjct: 743 -LAYTTSLALNHCQGIEAMMKKLVSDNKGFKNLKSLTIEN-----VIINTNSWVEMVSTN 796

Query: 525 LLELLS--LQNLINLKRICVDRLSTESFSELRT-----------MKVENCDELSNIFVLS 571
             +  S  L  L NL+ + + R+  E+FSEL+T           +++  C +L  +    
Sbjct: 797 TSKQSSDILDLLPNLEELHLRRVDLETFSELQTHLGLKLETLKIIEITMCRKLRTLLDKR 856

Query: 572 TTKCLPSLQRIAVIKCNKMKEIF-AIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELK 630
               +P+L+ I +  C+ ++ +  A+   +P V              +R L L NLP L 
Sbjct: 857 NFLTIPNLEEIEISYCDSLQNLHEALLYHQPFV------------PNLRVLKLRNLPNLV 904

Query: 631 SFC 633
           S C
Sbjct: 905 SIC 907

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score =  147 bits (370), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 123/404 (30%), Positives = 190/404 (47%), Gaps = 37/404 (9%)

Query: 1   MGSEANFSIEILNEEEAWRLFEVKLGNDDLI--PRMKSTATHIVKECGGLPIAIEPIAKA 58
           MG+E    +E L ++ AW LF  K+   DL+    ++  A  IV +CGGLP+A+  +  A
Sbjct: 299 MGAEYKLRVEFLEKKHAWELFCSKVWRKDLLESSSIRRLAEIIVSKCGGLPLALITLGGA 358

Query: 59  LRNKTESECWKNALHEL-RMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMP 117
           + ++   E W +A   L R P E    + +   +  +K SYD L+ + L+  F  C+L P
Sbjct: 359 MAHRETEEEWIHASEVLTRFPAE---MKGMNYVFALLKFSYDNLESDLLRSCFLYCALFP 415

Query: 118 K--SFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVV 175
           +  S     L +Y +G G        +   K Y L+ +LK +CLL  G    +  MH+VV
Sbjct: 416 EEHSIEIEQLVEYWVGEGFLTSSHGVNTIYKGYFLIGDLKAACLLETGDEKTQVKMHNVV 475

Query: 176 HDVAILIAC--GEQKEFLVRNGDVW--EWPDEDALKKCYAISWIDSSGGELPEGLECPQL 231
              A+ +A   G  KE ++    +   E P  +  ++   IS +D+    LPE L CP+L
Sbjct: 476 RSFALWMASEQGTYKELILVEPSMGHTEAPKAENWRQALVISLLDNRIQTLPEKLICPKL 535

Query: 232 ELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTL 291
             L+L  ++SS+   IP  FF  M  L+V+DL+   +  +P SI  LV L  L       
Sbjct: 536 TTLMLQ-QNSSLK-KIPTGFFMHMPVLRVLDLSFTSITEIPLSIKYLVELYHL------- 586

Query: 292 GDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRL 351
                          S+  + I   P+ELG L KL+ LDL     L+ I  + I   ++L
Sbjct: 587 ---------------SMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSKL 631

Query: 352 EELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAV 395
           E L +   +  W+++  G    +     D L  L  LTTL I V
Sbjct: 632 EVLNLYYSYAGWELQSFGEDEAEELGFAD-LEYLENLTTLGITV 674

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH22|DRL20_ARATH Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1

 Score =  117 bits (293), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 127/415 (30%), Positives = 189/415 (45%), Gaps = 70/415 (16%)

Query: 1   MGSEANFSIEILNEEEAWRLFEVKLGNDDL--IPRMKSTATHIVKECGGLPIAIEPIAKA 58
           MG E    ++ L E  A+ LF+ K+G   L   P +   A  + K+C GLP+A+  I + 
Sbjct: 298 MGVEHPMEVQCLEENVAFDLFQKKVGQTTLGSDPGIPQLARIVAKKCCGLPLALNVIGET 357

Query: 59  LRNKTESECWKNALHELRMPTENNFHREL----GKAYTAIKLSYDALKGEQLKKIFQLCS 114
           +  K   + W++A+H L     N++  E      K    +K SYD LKGEQ+K     C+
Sbjct: 358 MSCKRTIQEWRHAIHVL-----NSYAAEFIGMEDKVLPLLKYSYDNLKGEQVKSSLLYCA 412

Query: 115 LMPK--SFFASDLFKYCIGLGIFRGID-MEDARNKLYTLVHELKDSCLLLE---GYSCRE 168
           L P+       DL ++ I   I  G + +E A +K Y ++  L  + LL+E   G   R 
Sbjct: 413 LYPEDAKILKEDLIEHWICEEIIDGSEGIEKAEDKGYEIIGCLVRASLLMEWDDGDGRRA 472

Query: 169 FSMHDVVHDVAILIAC--GEQKE-FLVRNG-DVWEWPDEDALKKCYAISWIDSSGGELPE 224
             MHDVV ++A+ IA   G QKE F+VR G  V E P          +S +++    L  
Sbjct: 473 VCMHDVVREMALWIASELGIQKEAFIVRAGVGVREIPKIKNWNVVRRMSLMENKIHHLVG 532

Query: 225 GLECPQLELLLLSS-EHSSVDV---NIPQRFFTGMRELKVVDLT-NMQLFSLPSSIDLLV 279
             EC +L  LLL   E+ S+      I   FF  M +L V+DL+ N  LF LP  I  LV
Sbjct: 533 SYECMELTTLLLGKREYGSIRSQLKTISSEFFNCMPKLAVLDLSHNKSLFELPEEISNLV 592

Query: 280 NLQTLCLDYS------------------------TLGDITIIGKLKNLEILSLIESDIVE 315
           +L+ L L Y+                         L  IT I  L NL++L L  S    
Sbjct: 593 SLKYLNLLYTEISHLPKGIQELKKIIHLNLEYTRKLESITGISSLHNLKVLKLFRS---R 649

Query: 316 FPEELGKLTKLRLLDLTNCFHLKVIAPNV------------IASFTRLEELYMSN 358
            P +L  + +L  L+     HL+++   +            + S +RL E+Y S+
Sbjct: 650 LPWDLNTVKELETLE-----HLEILTTTIDPRAKQFLSSHRLLSHSRLLEIYGSS 699

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT4|DRL37_ARATH Probable disease resistance protein At5g47250 OS=Arabidopsis thaliana GN=At5g47250 PE=2 SV=1

 Score =  116 bits (290), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 197/411 (47%), Gaps = 49/411 (11%)

Query: 1   MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALR 60
           M +  +  ++ L+E +AW LF++K+  D L   +   A  IV +C GLP+A+E I K + 
Sbjct: 302 MRANEDIEVQCLSENDAWDLFDMKVHCDGL-NEISDIAKKIVAKCCGLPLALEVIRKTMA 360

Query: 61  NKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSF 120
           +K+    W+ AL  L          E G  +  +KLSYD LK +   K F  C+L PK++
Sbjct: 361 SKSTVIQWRRALDTLESYRSEMKGTEKG-IFQVLKLSYDYLKTKN-AKCFLYCALFPKAY 418

Query: 121 F--ASDLFKYCIGLGIFRGID-MEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHD 177
           +    +L +Y IG G     D  E A+++ Y ++  L  + LLLE  S ++  MHD++ D
Sbjct: 419 YIKQDELVEYWIGEGFIDEKDGRERAKDRGYEIIDNLVGAGLLLE--SNKKVYMHDMIRD 476

Query: 178 VAILIAC--GEQKEFLVR-NGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECP-QLEL 233
           +A+ I     + + ++V+ +  + + PD         +S  ++    +P+  E P Q  L
Sbjct: 477 MALWIVSEFRDGERYVVKTDAGLSQLPDVTDWTTVTKMSLFNNEIKNIPDDPEFPDQTNL 536

Query: 234 LLLSSEHSSVDVNIPQRFFTGMRELKVVDLT-NMQLFSLPSSIDLLVNLQTLCLDYSTLG 292
           + L  +++ + V+I  +FF  M  L V+DL+ N Q+  LP  I  LV+L+          
Sbjct: 537 VTLFLQNNRL-VDIVGKFFLVMSTLVVLDLSWNFQITELPKGISALVSLR---------- 585

Query: 293 DITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLE 352
                       +L+L  + I   PE LG L+KL  L+L +  +L+ +   +I+   +L+
Sbjct: 586 ------------LLNLSGTSIKHLPEGLGVLSKLIHLNLESTSNLRSVG--LISELQKLQ 631

Query: 353 ELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE 403
            L              GS++      L  L  L  L  L + V ND+ L E
Sbjct: 632 VLRFY-----------GSAAALDCCLLKILEQLKGLQLLTVTVNNDSVLEE 671

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 162/326 (49%), Gaps = 22/326 (6%)

Query: 1   MGSEANFSIEILNEEEAWRLFEVKLGNDDLI--PRMKSTATHIVKECGGLPIAIEPIAKA 58
           MG      +  L  E+AW LF+ K+G++ L   P +   A  + ++C GLP+A+  I + 
Sbjct: 298 MGDHKPMQVNCLEPEDAWELFKNKVGDNTLSSDPVIVELAREVAQKCRGLPLALNVIGET 357

Query: 59  LRNKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPK 118
           + +KT  + W++A+H     +   F     K    +K SYD+L  E +K  F  C+L P+
Sbjct: 358 MSSKTMVQEWEHAIHVFNT-SAAEFSDMQNKILPILKYSYDSLGDEHIKSCFLYCALFPE 416

Query: 119 S--FFASDLFKYCIGLGIFRGID--MEDARNKLYTLVHELKDSCLLLE--GYSCREFSMH 172
               +   L  Y I  G F G D  ++ ARNK Y ++  L  + LL +   Y C    MH
Sbjct: 417 DGEIYNEKLIDYWICEG-FIGEDQVIKRARNKGYAMLGTLTRANLLTKVGTYYC---VMH 472

Query: 173 DVVHDVAILIAC--GEQKE-FLVRNG-DVWEWPDEDALKKCYAISWIDSSGGELPEGLEC 228
           DVV ++A+ IA   G+QKE F+V+ G  + E P          +S +D+   E+    +C
Sbjct: 473 DVVREMALWIASDFGKQKENFVVQAGVGLHEIPKVKDWGAVRKMSLMDNDIEEITCESKC 532

Query: 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLT-NMQLFSLPSSIDLLVNLQTLCLD 287
            +L  L L S       N+P  F   M++L V+DL+ N     LP  I  LV+LQ L L 
Sbjct: 533 SELTTLFLQSNKLK---NLPGAFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLS 589

Query: 288 YSTLGDITI-IGKLKNLEILSLIESD 312
            +++  + I + +LK L  L L  +D
Sbjct: 590 NTSIEHMPIGLKELKKLTFLDLTYTD 615

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 172/342 (50%), Gaps = 18/342 (5%)

Query: 1   MGSEANFSIEILNEEEAWRLFEVKLGNDDL--IPRMKSTATHIVKECGGLPIAIEPIAKA 58
           MG +++  +  L  ++AW LF  K+G   L   P + + A  + K+C GLP+A+  I + 
Sbjct: 300 MGVDSDMEVRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGET 359

Query: 59  LRNKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPK 118
           +  K   + W++A+  L   +   F     +    +K SYD LK EQLK  FQ C+L P+
Sbjct: 360 MAYKRTVQEWRSAIDVL-TSSAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPE 418

Query: 119 --SFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVH 176
             +   +DL  Y IG G F   +   A N+ Y ++  L  SCLL+E  +     MHDVV 
Sbjct: 419 DHNIEKNDLVDYWIGEG-FIDRNKGKAENQGYEIIGILVRSCLLME-ENQETVKMHDVVR 476

Query: 177 DVAILIAC--GEQKE-FLVRNG-DVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLE 232
           ++A+ IA   G+QKE F+V+ G      P+ +  K    +S + ++   + +  E PQL 
Sbjct: 477 EMALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQLI 536

Query: 233 LLLLSSEHSSVDVNIPQRFFTGMRELKVVDLT-NMQLFSLPSSIDLLVNLQTLCLDYSTL 291
            LLL         +I   FF  M  L V+DL+ N  L  LP+ I   V+LQ L L  + +
Sbjct: 537 TLLLRKNFLG---HISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRI 593

Query: 292 GDITIIG--KLKNLEILSLIESDIVEFPEELGKLTKLRLLDL 331
             I   G  +L+ L  L+L  + +VE    +  LT L++L L
Sbjct: 594 -RIWPAGLVELRKLLYLNLEYTRMVESICGISGLTSLKVLRL 634

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score =  112 bits (280), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 173/355 (48%), Gaps = 29/355 (8%)

Query: 1   MGSEANFSIEILNEEEAWRLFEVKLGNDDL--IPRMKSTATHIVKECGGLPIAIEPIAKA 58
           MG E    ++ L E  A+ LF+ K+G   L   P +   A  + K+C GLP+A+  I + 
Sbjct: 298 MGDEEPMEVQCLEENVAFDLFQKKVGQKTLGSDPGIPQLARIVAKKCCGLPLALNVIGET 357

Query: 59  LRNKTESECWKNALHELRMPTENNFHREL----GKAYTAIKLSYDALKGEQLKKIFQLCS 114
           +  K   + W+NA+H L     N++  E      K    +K SYD LKGE +K     C+
Sbjct: 358 MSCKRTIQEWRNAIHVL-----NSYAAEFIGMEDKILPLLKYSYDNLKGEHVKSSLLYCA 412

Query: 115 LMPK--SFFASDLFKYCIGLGIFRGID-MEDARNKLYTLVHELKDSCLLLEGYSCREFS- 170
           L P+       DL ++ I   I  G + +E A +K Y ++  L  + LL+E    +  S 
Sbjct: 413 LYPEDAKIRKEDLIEHWICEEIIDGSEGIEKAEDKGYDIIGSLVRASLLMECVDLKGKSS 472

Query: 171 --MHDVVHDVAILIAC--GEQKE-FLVRNG-DVWEWPDEDALKKCYAISWIDSSGGELPE 224
             MHDVV ++A+ IA   G QKE F+VR G  V E P          +S + +    L  
Sbjct: 473 VIMHDVVREMALWIASELGIQKEAFIVRAGVGVREIPKVKNWNVVRRMSLMGNKIHHLVG 532

Query: 225 GLECPQLELLLLS-SEHSSV-----DVNIPQRFFTGMRELKVVDLT-NMQLFSLPSSIDL 277
             EC +L  LLL   E+ S+        I   FF  M +L V+DL+ N  LF LP  I  
Sbjct: 533 SYECMELTTLLLGEGEYGSIWRWSEIKTISSEFFNCMPKLAVLDLSHNQSLFELPEEISN 592

Query: 278 LVNLQTLCLDYSTLGDITI-IGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDL 331
           LV+L+ L L ++ +  ++  I +LK +  L+L  +  +E  + +  L  L++L L
Sbjct: 593 LVSLKYLNLSHTGIRHLSKGIQELKKIIHLNLEHTSKLESIDGISSLHNLKVLKL 647

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  106 bits (265), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 118/400 (29%), Positives = 180/400 (45%), Gaps = 54/400 (13%)

Query: 1   MGSEANFSIEILNEEEAWRLFEVKLGNDDL--IPRMKSTATHIVKECGGLPIAIEPIAKA 58
           MG +    +  L  EE+W LF++K+G + L   P +   A  + ++C GLP+A+  I +A
Sbjct: 302 MGVDDPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGEA 361

Query: 59  LRNKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPK 118
           +  K     W +A+  L   +  +F     +    +K SYD L GE +K  F  CSL P+
Sbjct: 362 MACKRTVHEWCHAIDVL-TSSAIDFSGMEDEILHVLKYSYDNLNGELMKSCFLYCSLFPE 420

Query: 119 SFF--ASDLFKYCIGLGIFRGIDMEDAR----NKLYTLVHELKDSCLLLEGYSCRE-FSM 171
            +      L  Y I  G    I+ ++ R    N+ Y ++  L  +CLLLE    +    M
Sbjct: 421 DYLIDKEGLVDYWISEGF---INEKEGRERNINQGYEIIGTLVRACLLLEEERNKSNVKM 477

Query: 172 HDVVHDVAILIAC--GEQKE-FLVRNG-DVWEWPDEDALKKCYAISWIDSSGGELPEGLE 227
           HDVV ++A+ I+   G+QKE  +VR G  + E P          IS +++   E+ +  E
Sbjct: 478 HDVVREMALWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRKISLMNNEIEEIFDSHE 537

Query: 228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLT-NMQLFSLPSSIDLLVNLQTLCL 286
           C  L  L L        V I   FF  M  L V+DL+ N  L  LP  I  L +L+   L
Sbjct: 538 CAALTTLFLQKNDV---VKISAEFFRCMPHLVVLDLSENQSLNELPEEISELASLRYFNL 594

Query: 287 DY------------------------STLGDITIIGKLKNLEILSLIESDIVEFPEELGK 322
            Y                        S+LG I  I  L NL  L L +S ++    ++  
Sbjct: 595 SYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSRLL---LDMSL 651

Query: 323 LTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE 362
           + +L+LL+     HL+VI  ++ +S    E L  S   VE
Sbjct: 652 VKELQLLE-----HLEVITLDISSSLV-AEPLLCSQRLVE 685

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 162/345 (46%), Gaps = 15/345 (4%)

Query: 1   MGSEANFSIEILNEEEAWRLFEVKLGNDDL--IPRMKSTATHIVKECGGLPIAIEPIAKA 58
           MG      ++ L+  +AW LF+ K+G   L   P +   A  +  +C GLP+A+  I + 
Sbjct: 299 MGVHDPMEVQCLSTNDAWELFQEKVGQISLGSHPDILELAKKVAGKCRGLPLALNVIGET 358

Query: 59  LRNKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPK 118
           +  K   + W +A+  L       F          +K SYD L  + ++  FQ C+L P+
Sbjct: 359 MAGKRAVQEWHHAVDVL-TSYAAEFSGMDDHILLILKYSYDNLNDKHVRSCFQYCALYPE 417

Query: 119 SFFASD--LFKYCIGLGIFRG-IDMEDARNKLYTLVHELKDSCLLL-EGYSCREFSMHDV 174
            +      L  Y I  G   G I  E A N+ Y ++  L  +CLL  EG +  E  MHDV
Sbjct: 418 DYSIKKYRLIDYWICEGFIDGNIGKERAVNQGYEILGTLVRACLLSEEGKNKLEVKMHDV 477

Query: 175 VHDVAI--LIACGEQKEF-LVRNGD-VWEWPDEDALKKCYAISWIDSSGGELPEGLECPQ 230
           V ++A+  L   G+ KE  +V+ G  + + P  +       +S +++   E+    ECP+
Sbjct: 478 VREMALWTLSDLGKNKERCIVQAGSGLRKVPKVEDWGAVRRLSLMNNGIEEISGSPECPE 537

Query: 231 LELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLT-NMQLFSLPSSIDLLVNLQTLCLDYS 289
           L  L L    S   V+I   FF  MR+L V+DL+ N QL  LP  I  LV L+ L L ++
Sbjct: 538 LTTLFLQENKSL--VHISGEFFRHMRKLVVLDLSENHQLDGLPEQISELVALRYLDLSHT 595

Query: 290 TL-GDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTN 333
            + G    +  LK L  L+L     +     + KL+ LR L L N
Sbjct: 596 NIEGLPACLQDLKTLIHLNLECMRRLGSIAGISKLSSLRTLGLRN 640

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	922
255563252	1603	Disease resistance protein RPS5, putativ	0.905	0.520	0.387	1e-144
296087872	1152	unnamed protein product [Vitis vinifera]	0.945	0.756	0.360	1e-142
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.912	0.639	0.381	1e-140
224083434	1144	cc-nbs-lrr resistance protein [Populus t	0.829	0.668	0.391	1e-136
224143316	1337	cc-nbs-lrr resistance protein [Populus t	0.924	0.637	0.382	1e-135
224111284	1340	cc-nbs-lrr resistance protein [Populus t	0.908	0.625	0.390	1e-135
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.934	0.350	0.369	1e-134
255574526	1232	Disease resistance protein RFL1, putativ	0.808	0.604	0.393	1e-123
359488288	1340	PREDICTED: LOW QUALITY PROTEIN: probable	0.869	0.598	0.357	1e-121
359488108	1436	PREDICTED: disease resistance protein At	0.954	0.612	0.347	1e-121

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 353/912 (38%), Positives = 503/912 (55%), Gaps = 77/912 (8%)

Query: 1    MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALR 60
            MG +  F +E+L EEEA  LFE+ +G D      +S A+ + K+C GLP+ I  IA+AL+
Sbjct: 299  MGVQKVFRLEVLQEEEALSLFEMMVG-DVKGGEFQSAASEVTKKCAGLPVLIVTIARALK 357

Query: 61   NKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSF 120
            NK +   WK+A+ +L             K Y+A++LSY+ L G ++K +F LC L+ KS 
Sbjct: 358  NK-DLYVWKDAVKQLSRCDNEEIQE---KVYSALELSYNHLIGAEVKSLFLLCGLLGKSD 413

Query: 121  FAS-DLFKYCIGLGIFRGID-MEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHDV 178
             A  DL  Y  GLG+F+GID + DARN+++ L+ +LK +CLLL+        +HDVV DV
Sbjct: 414  IAILDLLMYSTGLGLFKGIDTLGDARNRVHKLISDLKAACLLLDSDIKGRVKIHDVVRDV 473

Query: 179  AILIACGEQKEFLVRNGDVW-EWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLS 237
            AI IA   Q  F VRNG +  EWP++D  K C  IS   +    LPE LECP+LEL LL 
Sbjct: 474  AISIASRMQHLFTVRNGALLKEWPNKDVCKSCTRISLPYNDIHGLPEVLECPELELFLLF 533

Query: 238  SEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITII 297
            ++   + + +P   F   + L+V++ T M   SLP S+  L NL TLCLD+  L D+ II
Sbjct: 534  TQ--DISLKVPDLCFELTKNLRVLNFTGMHFSSLPPSLGFLKNLFTLCLDWCALRDVAII 591

Query: 298  GKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMS 357
            G+L  L ILS   SDIVE P E+ +LTKL+ LDL++C  LKVI   +I+  T+LEELYM+
Sbjct: 592  GELTGLTILSFKHSDIVELPREIRQLTKLKFLDLSHCLKLKVIPAKIISELTQLEELYMN 651

Query: 358  NCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILI 417
            N F  W V+  G +++++ ASL EL  LP LTTLEI V +   LP+  F R+LERF+I I
Sbjct: 652  NSFDLWDVQ--GINNQRN-ASLAELECLPYLTTLEICVLDAKILPKDLFFRKLERFRIFI 708

Query: 418  GDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGI--RKVEYLC 475
            GD            W           D+ + R LKLKLN  +I L     I     E L 
Sbjct: 709  GDV-----------WSGTG-------DYGTSRTLKLKLNTSSIHLEHGLSILLEVTEDLY 750

Query: 476  LDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLI 535
            L + +G+K++L++LD+QGF+QLKHL VQN+P++ +I+D      C+AFP+LE L L NL+
Sbjct: 751  LAEVKGIKSVLYDLDSQGFTQLKHLDVQNDPEIQYIIDPNRRSPCNAFPILESLYLDNLM 810

Query: 536  NLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFA 595
            +L++IC  +L+T SFS+LR++ V  CD L N+F  S  +CL  LQ++ V+ C  ++EI A
Sbjct: 811  SLEKICCGKLTTGSFSKLRSLTVVKCDRLKNLFSFSMMRCLLQLQQMKVVDCANLEEIVA 870

Query: 596  IGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSM-------------- 641
             G E     D +N  E ++  Q+  L+L  LP  KSFC + K   +              
Sbjct: 871  CGSE-----DTDNDYEAVKLTQLCSLTLKRLPMFKSFCSKKKVSPISLRVQKQLTTDTGL 925

Query: 642  -----------PPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQK 690
                       P  LFN     PNLE LEL  I  + I  +Q       L  LIV  C  
Sbjct: 926  KEIAPKGELGDPLPLFNEMFCFPNLENLELSSIACEKICDDQLSAISSNLMSLIVERCWN 985

Query: 691  LKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFA--FRRVTNISLCHLPE 748
            LK++F +S++K+L  L+ LE+ +C  ++ II      +E       F  +  + L +LP 
Sbjct: 986  LKYLFTSSLVKNLLLLKRLEVFDCMSVEGIIVAEELVEEERNRKKLFPELDFLKLKNLPH 1045

Query: 749  LTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFH---------SNEKKQLHVPKQP 799
            +T    G +  E+  L+KL + +C  LN F S+S S            N +K  H   QP
Sbjct: 1046 ITRFCDG-YPVEFSSLRKLLIENCPALNMFVSKSPSADMIESREAKGMNSEKNHHTETQP 1104

Query: 800  FFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASV--PIGLLEK 857
             F+ +  FP+LEE+ LS  D +  +  +      F  LK + +          P  LLE+
Sbjct: 1105 LFNEKVAFPSLEEIELSYIDNLRRIWHNQLDAGSFCKLKIMRINGCKKLRTIFPSYLLER 1164

Query: 858  FHGLENLNLSFC 869
            F  LE L+LS C
Sbjct: 1165 FQCLEKLSLSDC 1176

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087872|emb|CBI35155.3| unnamed protein product [Vitis vinifera]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 367/1018 (36%), Positives = 538/1018 (52%), Gaps = 146/1018 (14%)

Query: 1    MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALR 60
            MG++ +F +E L EEEA  LF+   G+    P ++S A  + KEC GLPIAI  +AKAL+
Sbjct: 117  MGTQKDFPVEHLQEEEALILFKKMAGDSIEEPDLQSIAIDVAKECAGLPIAIVTVAKALK 176

Query: 61   NKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSF 120
            NK  S  W++AL +L+     N        Y+ ++LSY  L+G+++K +F LC LM    
Sbjct: 177  NKGLS-IWEDALRQLKRSIPTNIKGMDAMVYSTLELSYKHLEGDEVKSLFLLCGLMSNKI 235

Query: 121  FASDLFKYCIGLGIFRGID-MEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHDVA 179
            +  DL KY +GL +F+G + +E+A+N++ TLV  LK S LLL+        MHDVV DVA
Sbjct: 236  YIDDLLKYGMGLRLFQGTNTLEEAKNRIDTLVDSLKASKLLLDTGHNSFVRMHDVVRDVA 295

Query: 180  ILIACGEQKEFLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSE 239
            I I     + F +R  ++ EWP  D L+ C  +S   +   ELP  L CP+LEL L    
Sbjct: 296  IAIVSKVHRVFSLREDELVEWPKMDELQTCTKMSLAYNDICELPIELVCPELELFLF--- 352

Query: 240  HSSVD--VNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITII 297
            + ++D  + IP+ FF  M++LKV+DL+NM   SLPSS+  L NL+TL L++  LGDI+II
Sbjct: 353  YHTIDYHLKIPETFFEEMKKLKVLDLSNMHFTSLPSSLRCLTNLRTLSLNWCKLGDISII 412

Query: 298  GKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMS 357
             +LK LE  S + S+I + P E+ +LT LRL DL +C  L+ I PNVI+S ++LE L M 
Sbjct: 413  VELKKLEFFSFMGSNIEKLPREIAQLTHLRLFDLRDCSKLREIPPNVISSLSKLENLCME 472

Query: 358  NCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILI 417
            N F  W+VE       KS AS+ E   LP LTTL+I + +   L       +L R++I I
Sbjct: 473  NSFTLWEVEG------KSNASIAEFKYLPYLTTLDIQIPDAELLLTDVLFEKLIRYRIFI 526

Query: 418  GDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGI----RKVEY 473
            GD            W           D        LKLN     LR   GI    +  + 
Sbjct: 527  GD---------VWSW-----------DKNCPTTKTLKLNKLDTSLRLADGISLLLKGAKD 566

Query: 474  LCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSRE-IVDCDAFPLLELLSLQ 532
            L L +  G  N+  +LD +GF QLK L V+ +P++  I++S + I+   AFP+LE L L 
Sbjct: 567  LHLRELSGAANVFPKLDREGFLQLKCLHVERSPEMQHIMNSMDPILSPCAFPVLESLFLN 626

Query: 533  NLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKE 592
             LINL+ +C  +L   SFS LR +KVE CD L  +F +S  + L  L++I + +C  M +
Sbjct: 627  QLINLQEVCHGQLLVGSFSYLRIVKVEYCDGLKFLFSMSMARGLSRLEKIEITRCKNMYK 686

Query: 593  IFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSL------- 645
            + A G E     D ++A++ I FA++RYL+L +LP+L++FC E  G +MP +        
Sbjct: 687  MVAQGKE-----DGDDAVDAILFAELRYLTLQHLPKLRNFCLE--GKTMPSTTKRSPTTN 739

Query: 646  --FNG---------------------KVVLPNL--------------------EALELCE 662
              FNG                      ++L N                     E  ++  
Sbjct: 740  VRFNGICSEGELDNQTSVFNQLVCHSSIILSNYMLKRLQSLQFLKAVDCSSLEEVFDMEG 799

Query: 663  INVK--------------------SIWHNQTP---CCFQRLTRLIVWGCQKLKFMFYASM 699
            INVK                     IW N+ P     FQ L  +++  CQ LK +F AS+
Sbjct: 800  INVKEAVAVTQLSKLILQFLPKVKQIW-NKEPRGILTFQNLKSVMIDQCQSLKNLFPASL 858

Query: 700  IKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTS 759
            ++ L QLQ L++ +C G++VI+++    +    F F +VT++ L HL +L   YPG HTS
Sbjct: 859  VRDLVQLQELQVWSC-GIEVIVAKDNGVKTAAKFVFPKVTSLRLSHLHQLRSFYPGAHTS 917

Query: 760  EWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLH-------VPKQPFFSFEKI-FPNLE 811
            +WP LK+L+V  C +++ FA E+ +F     +Q+H       +  QP F  +++ FPNLE
Sbjct: 918  QWPLLKELKVHECPEVDLFAFETPTF-----QQIHHMGNLDMLIHQPLFLVQQVAFPNLE 972

Query: 812  ELGLSIKDIMMLLQGDFPQDHLFGSLKDLEV--RDDDSASVPIGLLEKFHGLENLNLSFC 869
            EL L   +   + Q  FP +  F  L+ L V    D    +P  +L++ H LE LN+  C
Sbjct: 973  ELTLDYNNATEIWQEQFPVNS-FCRLRVLNVCEYGDILVVIPSFMLQRLHNLEKLNVKRC 1031

Query: 870  -SYKELFSNGG-----QVHLIKKLELICLND---LEYLWIPNSKMGDSILQNLEILKT 918
             S KE+F   G     Q  ++ +L  I L D   L +LW  NSK G   LQ+LE L+ 
Sbjct: 1032 SSVKEIFQLEGHDEENQAKMLGRLREIWLRDLPGLTHLWKENSKPGLD-LQSLESLEV 1088

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 349/915 (38%), Positives = 499/915 (54%), Gaps = 74/915 (8%)

Query: 1    MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALR 60
            MGS  NF I++L   EAW LFE  +G       ++  A  + + C GLPI +  +A+AL+
Sbjct: 292  MGSNRNFPIQVLPASEAWNLFEKMVGVAVKKHSVRLVAAEVARRCAGLPILLATVARALK 351

Query: 61   NKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCS-LMPKS 119
            NK +   WK AL +L    +++   ++   Y  ++LSY +L+G+++K +F LC  L   +
Sbjct: 352  NK-DLYAWKKALKQLTRFDKDDIDDQV---YLGLELSYKSLRGDEIKSLFLLCGQLRSNN 407

Query: 120  FFASDLFKYCIGLGIFRGID-MEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHDV 178
               SDL +Y IGL +F+G   +E+ RN L TLV ELK SCLLLEG       MHDVVH  
Sbjct: 408  ILISDLLRYGIGLDLFKGCSTLEETRNSLLTLVDELKASCLLLEGDKDGSVKMHDVVHSF 467

Query: 179  AILIACGEQKEFLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSS 238
            AI +A  +     V + +  EWP  D L++  AIS       +LP  LECP L   LL +
Sbjct: 468  AISVALRDHHVLTVAD-EFKEWPANDVLQQYTAISLPFRKIPDLPAILECPNLNSFLLLN 526

Query: 239  EHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIG 298
            +  S+   IP  FF  M+ELK++DLT + L  LPSS+  L NLQTLCLD+  L DI+IIG
Sbjct: 527  KDPSL--QIPDSFFREMKELKILDLTEVNLSPLPSSLQFLENLQTLCLDHCVLEDISIIG 584

Query: 299  KLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
            +L  L++LSL+ S+IV  P E+GK+T+L+LLDL+NC  L+VI+PN ++S TRLE+LYM N
Sbjct: 585  ELNKLKVLSLMSSNIVRLPREIGKVTRLQLLDLSNCERLEVISPNALSSLTRLEDLYMGN 644

Query: 359  CFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFF--VRELERFKIL 416
             FV+W  E EGSSS+++ A L EL  L  L+TL + + + + +P+  F   + LERF+I 
Sbjct: 645  SFVKW--ETEGSSSQRNNACLSELKHLSNLSTLHMQITDADNMPKDLFSSFQNLERFRIF 702

Query: 417  IGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKV-EYLC 475
            IGD           DW         + D  S R LKLKLN        +  + K+ E L 
Sbjct: 703  IGD---------GWDWS--------VKDATS-RTLKLKLNTVIQLEEGVNTLLKITEELH 744

Query: 476  LDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLI 535
            L +  GVK+IL +LD +GF QL+HL VQN P + +I++S  +    AF  L+ L L+NL 
Sbjct: 745  LQELNGVKSILNDLDGEGFPQLRHLHVQNCPGVQYIINSIRMGPRTAFLNLDSLFLENLD 804

Query: 536  NLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFA 595
            NL++IC  +L  ES   LR +KVE+C  L N+F +S  + L  L+ I +I C  M+E+ A
Sbjct: 805  NLEKICHGQLMAESLGNLRILKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIMEEVVA 864

Query: 596  IGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVK------------------ 637
               E  D  D       IEF Q+R L+L  LP+  SF   V+                  
Sbjct: 865  EESEN-DAADGEPI---IEFTQLRRLTLQCLPQFTSFHSNVEESSDSQRRQKLLASEARS 920

Query: 638  ---------GPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPC---CFQRLTRLIV 685
                     G SM  SLFN K++ PNLE L+L  I V+ IWH+Q      C + L  + V
Sbjct: 921  KEIVAGNELGTSM--SLFNTKILFPNLEDLKLSSIKVEKIWHDQPSVQSPCVKNLASIAV 978

Query: 686  WGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVII--SEGGPGQEPPCFAFRRVTNISL 743
              C+ L ++  +SM++SL QL+ LEI NC  ++ I+   + G G+      F ++  +SL
Sbjct: 979  ENCRNLNYLLTSSMVESLAQLKKLEICNCKSMEEIVVPEDIGEGKMMSKMLFPKLLILSL 1038

Query: 744  CHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSF 803
              LP+LT  +   +  E   LK L V +C +L  F S   S       +    K   F  
Sbjct: 1039 IRLPKLT-RFCTSNLLECHSLKVLTVGNCPELKEFISIPSSADVPAMSKPDNTKSALFDD 1097

Query: 804  EKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEV--RDDDSASVPIGLLEKFHGL 861
            +  FP+LEE  ++  D + ++         F  LK L V    +     P  +L +FH L
Sbjct: 1098 KVAFPDLEEFLIAEMDNLKVIWHSELHSDSFCKLKTLHVVLVKNLLNIFPSSMLRRFHNL 1157

Query: 862  ENLNLSFC-SYKELF 875
            ENL +  C S +E+F
Sbjct: 1158 ENLTIGACDSVEEIF 1172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083434|ref|XP_002307025.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222856474|gb|EEE94021.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 332/849 (39%), Positives = 470/849 (55%), Gaps = 84/849 (9%)

Query: 1    MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALR 60
            M  + NF I  L+EEE W LF+   G+    P ++S A  + K C GLP+AI  +A+AL+
Sbjct: 300  MDIQKNFPINALSEEETWELFKKMAGDHVEHPDLQSLAIEVAKMCAGLPVAIVTVARALK 359

Query: 61   NKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSF 120
            NK  S+ WKNAL EL+ P+  NF       Y AI+LSY+ L+ ++LK  F LCS M  + 
Sbjct: 360  NKNLSQ-WKNALRELKRPSPRNFAGVQEDVYAAIELSYNHLESKELKSTFLLCSRMGYNA 418

Query: 121  FASDLFKYCIGLGIFRG-IDMEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHDVA 179
               DL KY +GLG+F G + +E+A++++++LVH+LK S LLLE +S  +FSMHD V DVA
Sbjct: 419  STRDLLKYGMGLGLFSGFVTVEEAQDRVHSLVHKLKASGLLLENHSDWQFSMHDAVRDVA 478

Query: 180  ILIACGEQKEFLVRNGDVWE--WPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLS 237
            I IA  +   F+   GD  E  W  ++ LKK Y   W+ SS  EL   +E PQL+ L + 
Sbjct: 479  ISIAFRDCHVFV--GGDEVEPKWSAKNMLKK-YKEIWL-SSNIELLREMEYPQLKFLHVR 534

Query: 238  SEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITII 297
            SE  S++  I      GM +LKV+ LTN+ L SLPS +  L NL+TLCL  S+LG+I  I
Sbjct: 535  SEDPSLE--ISSNICRGMHKLKVLVLTNISLVSLPSPLHFLKNLRTLCLHQSSLGEIADI 592

Query: 298  GKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMS 357
            G+LK LEILS  +S+I   P ++G+LTKLR+LDL++CF L VI PN+ ++ + LEEL M 
Sbjct: 593  GELKKLEILSFAKSNIKHLPRQIGQLTKLRMLDLSDCFELDVIPPNIFSNLSMLEELCMG 652

Query: 358  NCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILI 417
            N F  W  E E +      ASL EL  LP LT ++I V + + + +G   + LERF+I I
Sbjct: 653  NSFHHWATEGEDN------ASLVELDHLPHLTNVDIHVLDSHVMSKGMLSKRLERFRIFI 706

Query: 418  GDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRK--LQGIRKVEYLC 475
            GD           DW  +         +QSLR LKLKLN     L    L  +++ + L 
Sbjct: 707  GD---------VWDWDGV---------YQSLRTLKLKLNTSASNLEHGVLMLLKRTQDLY 748

Query: 476  LDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLI 535
            L + +GV N++ ELDT+GF QL+HL + N+ D+ +I+++        FP+LE L L NL+
Sbjct: 749  LLELKGVNNVVSELDTEGFLQLRHLHLHNSSDIQYIINTSSEFPSHVFPVLESLFLYNLV 808

Query: 536  NLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFA 595
            +L+++C   L+ ESF +L  ++V NC +L ++F  S  + L  LQ I +  C  M+E+ A
Sbjct: 809  SLEKLCHGILTAESFRKLTIIEVGNCVKLKHLFPFSVARGLSQLQTINISFCLTMEEVVA 868

Query: 596  IGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKG----------------- 638
              G+E +  D+   I+ +EF Q+  LSL  LP LK+FC   K                  
Sbjct: 869  EEGDEFE--DSCTEIDVMEFNQLSSLSLQCLPHLKNFCSREKTSRLCQAQLNPVATSVGL 926

Query: 639  ---------PSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQ----TPCCFQRLTRLIV 685
                     P  P  LF  K+++P L+ LEL  INV+ IWH Q         Q L  L V
Sbjct: 927  QSKEISEDEPRNPLQLFCEKILIPKLKKLELVSINVEKIWHGQLHRENTFPVQNLQTLYV 986

Query: 686  WGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGG--PGQEPPCFAFRRVTNISL 743
              C  LK++F  SM+KSL QL++L +RNC  ++ IIS  G   G+      F ++ ++ L
Sbjct: 987  DDCHSLKYLFSPSMVKSLVQLKYLTVRNCKSMEEIISVEGVEEGEMMSEMCFDKLEDVEL 1046

Query: 744  CHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFAS-----------ESFSFHSNEKKQ 792
              LP LT    G    +   LK+L +  C +  TF S           E    HS E   
Sbjct: 1047 SDLPRLTWFCAG-SLIKCKVLKQLYICYCPEFKTFISCPDSANMTVDIEPGELHSRESD- 1104

Query: 793  LHVPKQPFF 801
             H   QP F
Sbjct: 1105 -HNAVQPLF 1112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143316|ref|XP_002336027.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222838884|gb|EEE77235.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 353/923 (38%), Positives = 517/923 (56%), Gaps = 71/923 (7%)

Query: 1    MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALR 60
            MG+  NF I+IL   EAW  FE  +G     P ++  A  + K C GLPI +  +A+AL+
Sbjct: 292  MGANRNFQIQILPVREAWNFFEKMVGVTVKNPSVQLVAAEVAKRCAGLPILLATVARALK 351

Query: 61   NKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCS-LMPKS 119
            N+ +   WK AL +L    +++  +    AY+ ++LSY AL+ +++K +F LC  ++   
Sbjct: 352  NE-DLYAWKEALTQLTRFDKDDIDK---TAYSCLELSYKALRDDEIKSLFLLCGQILTYD 407

Query: 120  FFASDLFKYCIGLGIFRGIDM-EDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHDV 178
               SDL KY IGL +F+G    E+ARN+L+TLV ELK SCLLLEG +     MHDVV   
Sbjct: 408  ALISDLLKYAIGLDLFKGRSTSEEARNRLHTLVDELKASCLLLEGDNDGSVKMHDVVRSF 467

Query: 179  AILIACGEQKEFLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQL-ELLLLS 237
            AI +A  +    +V + +  EWP  D L++  AIS       +LP  LECP L   LLLS
Sbjct: 468  AISVALRDHHVLIVAD-EFKEWPTNDVLQQYTAISLPFRKIPDLPAILECPNLNSFLLLS 526

Query: 238  SEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITII 297
            ++ S   + IP+ FF  M+ELKV+DLT + L  LPSS+  L NLQTLCLD+  L DI+I+
Sbjct: 527  TDPS---LQIPENFFREMKELKVLDLTGVNLSPLPSSLQFLENLQTLCLDFCVLEDISIV 583

Query: 298  GKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMS 357
            G+LK L++LSL+ SDIV  P E+GKLT+L LLDL+NC  L+VI+PNV++S TRLEELYM 
Sbjct: 584  GELKKLKVLSLMGSDIVCLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLTRLEELYMG 643

Query: 358  NCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFV--RELERFKI 415
            N F++W  E EG SS+++ A L EL  L  L TL++ + + + +P+  F+  ++LERF+I
Sbjct: 644  NSFLKW--EAEGPSSERNSACLSELKLLANLITLDMQITDADHMPKDLFLCFQKLERFRI 701

Query: 416  LIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKV-EYL 474
             IGD           DW          + + + R LKLKLN       ++  + K+ E L
Sbjct: 702  FIGD---------GWDWS---------VKYATSRTLKLKLNTVIQLEERVNTLLKITEEL 743

Query: 475  CLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNL 534
             L +  GVK+IL +LD +GF QLK L VQN P + +I++S  +    AF  L+ L L+NL
Sbjct: 744  HLQELNGVKSILNDLDEEGFCQLKDLHVQNCPGVQYIINSMRMGPRTAFLNLDSLFLENL 803

Query: 535  INLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIF 594
             NL++IC  +L  ES   LR +KVE+C  L N+F +S  + +  L+ I +I C  M+E+ 
Sbjct: 804  DNLEKICHGQLMAESLGNLRILKVESCHRLKNLFSVSIARRVVRLEEITIIDCKIMEEVV 863

Query: 595  AIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSF---------CCEVK-------- 637
            A   E  D  D     E IEF Q+R L+L  LP+  SF           +V+        
Sbjct: 864  AEESEN-DTADG----EPIEFTQLRRLTLQCLPQFTSFHSNRRQKLLASDVRSKEIVAGN 918

Query: 638  --GPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQ---TPCCFQRLTRLIVWGCQKLK 692
              G SM  SLFN K++ P LE L L  I V+ IWH+Q    P C + L  ++V  C  L 
Sbjct: 919  ELGTSM--SLFNTKILFPKLEDLMLSSIKVEKIWHDQHAVQPPCVKNLASIVVESCSNLN 976

Query: 693  FMFYASMIKSLEQLQHLEIRNCTGL-QVIISEG-GPGQEPPCFAFRRVTNISLCHLPELT 750
            ++  +SM++SL QL+ LEI NC  + ++++ EG G G+      F ++  +SL  LP+LT
Sbjct: 977  YLLTSSMVESLAQLKSLEICNCKSMEEIVVPEGIGEGKMMSKMLFPKLHILSLIRLPKLT 1036

Query: 751  CLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNL 810
              +   +  E   LK L +  C +L  F S   S       +    K   F  +  FPNL
Sbjct: 1037 -RFCTSNLLECHSLKVLTLGKCPELKEFISIPSSADVPAMSKPDNTKSALFDDKVAFPNL 1095

Query: 811  EE-LGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDS--ASVPIGLLEKFHGLENLNLS 867
               +   + ++ ++   +   D  F  LK L V    +     P  +L +FH LENL ++
Sbjct: 1096 VVFVSFEMDNLKVIWHNELHPDS-FCRLKILHVGHGKNLLNIFPSSMLGRFHNLENLVIN 1154

Query: 868  FC-SYKELFSNGGQVHLIKKLEL 889
             C S +E+F     +++ ++L +
Sbjct: 1155 DCDSVEEIFDLQALINVEQRLAV 1177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 355/909 (39%), Positives = 508/909 (55%), Gaps = 71/909 (7%)

Query: 1    MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALR 60
            MG+  NF +++L   EAW  FE  +G     P ++  A  + K C GLPI +  +A+AL+
Sbjct: 292  MGANRNFQVQVLPVREAWNFFEKMVGVTVKNPSVQPVAAEVAKRCAGLPILLATVARALK 351

Query: 61   NKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCS-LMPKS 119
            N+ +   WK+AL +L    ++    ++   Y+ ++LSY AL+G+++K +F LC   +   
Sbjct: 352  NE-DLYAWKDALKQLTRFDKDEIDNQV---YSCLELSYKALRGDEIKSLFLLCGQFLTYD 407

Query: 120  FFASDLFKYCIGLGIFRGID-MEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHDV 178
               SDL KY IGL +F+G   +E+ARN+L TLV ELK SCLLLEG       MHDVV   
Sbjct: 408  SSISDLLKYAIGLDLFKGRSTLEEARNRLRTLVDELKASCLLLEGDKDGRVKMHDVVQSF 467

Query: 179  AILIACGEQKEFLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSS 238
            A  +A  +    +V + +  EWP  D L++  AIS       +LP  LECP L   +L +
Sbjct: 468  AFSVASRDHHVLIVAD-EFKEWPTSDVLQQYTAISLPYRKIPDLPAILECPNLNSFILLN 526

Query: 239  EHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIG 298
            +  S+   IP  FF  M+ELKV+DLT + L  LPSS+  L NLQTLCLD   L DI+I+G
Sbjct: 527  KDPSL--QIPDNFFREMKELKVLDLTRVNLSPLPSSLQFLENLQTLCLDGCVLEDISIVG 584

Query: 299  KLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
            +LK L++LSLI SDIV  P E+GKLT+L LLDL+NC  L+VI+PNV++S TRLEELYM N
Sbjct: 585  ELKKLKVLSLISSDIVCLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLTRLEELYMGN 644

Query: 359  CFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEN-DNALPE-GFFVRELERFKIL 416
             FV+W  E EGSSS+++ A L EL  L  L TL + + + DN L +  F  ++LERF+I 
Sbjct: 645  SFVKW--ETEGSSSQRNNACLSELKRLSNLITLHMQITDADNMLKDLSFLFQKLERFRIF 702

Query: 417  IGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQG--IRKVEYL 474
            IGD           DW          + + + R LKLKLN   I L +     ++  E L
Sbjct: 703  IGD---------GWDWS---------VKYATSRTLKLKLN-TVIQLEEWVNTLLKSTEEL 743

Query: 475  CLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNL 534
             L + +GVK+IL +LD + F +LKHL VQN P + +I++S  +    AF  L+ L L+NL
Sbjct: 744  HLQELKGVKSILNDLDGEDFPRLKHLHVQNCPGVQYIINSIRMGPRTAFLNLDSLFLENL 803

Query: 535  INLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIF 594
             NL++IC  +L  ES  +LR +KVE+C  L N+F +S  + L  L+ I +I C  M+E+ 
Sbjct: 804  DNLEKICHGQLMAESLGKLRILKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIMEEVV 863

Query: 595  AIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSF---------CCEVK-------- 637
            A   E  D  D     E IEFAQ+R L+L  LP+  SF           +V+        
Sbjct: 864  AEESEN-DTADG----EPIEFAQLRRLTLQCLPQFTSFHSNRRQKLLASDVRSKEIVAGN 918

Query: 638  --GPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQ---TPCCFQRLTRLIVWGCQKLK 692
              G SM  SLFN K++ PNLE L+L  I V+ IWH+Q    P C + L  ++V  C  L 
Sbjct: 919  ELGTSM--SLFNTKILFPNLEDLKLSSIKVEKIWHDQPAVQPPCVKNLASMVVESCSNLN 976

Query: 693  FMFYASMIKSLEQLQHLEIRNCTGL-QVIISEG-GPGQEPPCFAFRRVTNISLCHLPELT 750
            ++  +SM++SL QL+ LEI NC  + ++++ EG G G+      F ++  + L  LP+LT
Sbjct: 977  YLLTSSMVESLAQLERLEICNCESMEEIVVPEGIGEGKMMSKMLFPKLHLLELSGLPKLT 1036

Query: 751  CLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNL 810
              +   +  E   LK L V +C +L  F S   S       +    K  FF  +  FP+L
Sbjct: 1037 -RFCTSNLLECHSLKVLMVGNCPELKEFISIPSSADVPVMSKPDNTKSAFFDDKVAFPDL 1095

Query: 811  EE-LGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDS--ASVPIGLLEKFHGLENLNLS 867
            E  L   + ++  +   +   D  F  LK L V    +     P  +L + H LENL ++
Sbjct: 1096 EVFLIFEMDNLKAIWHNELHSDS-FCELKILHVGHGKNLLNIFPSSMLGRLHNLENLIIN 1154

Query: 868  FC-SYKELF 875
             C S +E+F
Sbjct: 1155 DCDSVEEIF 1163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 347/938 (36%), Positives = 516/938 (55%), Gaps = 76/938 (8%)

Query: 1    MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALR 60
            M  + +F + +L +EEAW+LFE K G     P +   AT I ++C GLP+ I  +A AL+
Sbjct: 250  MDVQRHFLLRVLQDEEAWQLFEKKAGEVK-DPTLHPIATQIARKCAGLPVLIVAVATALK 308

Query: 61   NKTESECWKNALHELRMPTENNFHRELGKA-YTAIKLSYDALKGEQLKKIFQLCSLMPKS 119
            NK   E W++AL +L     N F +E  +A YTA+KLSY+ L  E+ K +F LC  +   
Sbjct: 309  NKELCE-WRDALEDL-----NKFDKEGYEASYTALKLSYNFLGAEE-KSLFVLCGQLKAH 361

Query: 120  FFA-SDLFKYCIGLGIF-RGIDMEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHD 177
            +   SDL KY +GLG+F +   ++ ARN+L  +V++LK SCLLLEG    E  MHDVVH+
Sbjct: 362  YIVVSDLLKYSLGLGLFNQRTTVKAARNRLLKVVNDLKRSCLLLEGDDDDEVRMHDVVHN 421

Query: 178  VAILIACGEQKEFLVR-NGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLL 236
             A L+A  +   F V  +  + EWP++D L++  AIS  D    +LPE  ECP L+  LL
Sbjct: 422  FATLVASRDHHVFAVACDSGLEEWPEKDILEQFTAISLPDCKIPKLPEVFECPDLQSFLL 481

Query: 237  SSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITI 296
             ++ SS+   IP  FF+ M++LK++DL+N+ L  +P S+  L NLQTLCLD  TL DI  
Sbjct: 482  YNKDSSL--KIPDNFFSRMKKLKLMDLSNVHLSPMPLSLQCLENLQTLCLDRCTLEDIAA 539

Query: 297  IGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYM 356
            IG+LK L++LS I S +V+ P E+GKLT+L+LLDL+ C  L+VI   V++  T+LEELYM
Sbjct: 540  IGELKKLQVLSFIGSTMVQLPREVGKLTRLQLLDLSRCQKLEVIPKGVLSCLTKLEELYM 599

Query: 357  SNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKIL 416
             N FV+W  E E     ++ ASLDEL  LP L TLE+ + N   LP   F  +L+ +K+ 
Sbjct: 600  GNSFVQW--ESEEHDGDRNNASLDELKLLPNLVTLELHIINAEILPRDVFSEKLDLYKVF 657

Query: 417  IGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQG-IRKVEYLC 475
            IG+            WF           +++ R LKLKLN  +I + K++  +   E L 
Sbjct: 658  IGEEW---------SWFG---------KYEASRTLKLKLN-SSIEIEKVKVLLMTTEDLY 698

Query: 476  LDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVD-CDAFPLLELLSLQNL 534
            LD+ +GV+N+L+ELD QGF QLKHL +QN+ ++ +IVD   + +   AFP LE L + NL
Sbjct: 699  LDELEGVRNVLYELDGQGFPQLKHLHIQNSSEIQYIVDCLSMGNHYIAFPRLESLLVDNL 758

Query: 535  INLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIF 594
             NL +IC  +L + SFS+LR +KVE+C+ L N+F  S  + L  L+ I V  CN M+EI 
Sbjct: 759  NNLGQICYGQLMSGSFSKLRKLKVEHCNALKNLFYFSMFRGLVQLEEIDVSSCNIMEEIV 818

Query: 595  AIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFC-------------CEVKGPSM 641
                E+    D     E I+  ++R L+L  LP   SFC             C       
Sbjct: 819  VEEIEDDSGRD-----EIIKPIRLRTLTLEYLPRFTSFCSQRMQKLAGLDAGCAQIISET 873

Query: 642  PPSLFNGKVVLPNLEALELCEI-NVKSIWHNQT---PCCFQRLTRLIVWGCQKLKFMFYA 697
            P  LF  K+   NL  L+L  I N++ IW NQ    P   Q LT LIV GC KL ++F +
Sbjct: 874  PSVLFGQKIEFSNLLNLKLSSINNMEKIWRNQVKEPPSSVQNLTSLIVEGCGKLSYLFTS 933

Query: 698  SMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLH 757
            SM+++L QL++LEI +C+ ++ II   G  +      F  +  + L  LP L     G +
Sbjct: 934  SMVENLSQLEYLEISDCSFMEEIIVAEGLTKHNSKLHFPILHTLKLKSLPNLIRFCFG-N 992

Query: 758  TSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSI 817
              E P L  L + +C +L  F S S S +    +         F  +  FP LE+L +  
Sbjct: 993  LIECPSLNALRIENCPRLLKFISSSASTNMEANRGGRETNSTLFDEKVSFPILEKLEIVY 1052

Query: 818  KDIMMLLQGDFPQDHLFGSLKDLEVRD--DDSASVPIGLLEKFHGLENLNLSFC------ 869
             + + ++     +   F  LK +++++  +     P  +L     LE++ ++ C      
Sbjct: 1053 MNNLRMIWESEDRGDSFCKLKIVKIQNCKELVTIFPSKMLRALQKLEDVVVTNCDLLEEV 1112

Query: 870  -SYKELFSNGGQ-------VHLIKKLELICLNDLEYLW 899
             + +EL +  G+       V  ++ L +  L  L+++W
Sbjct: 1113 FNLQELMATEGKQNRVLPVVAQLRDLTIENLPSLKHVW 1150

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574526|ref|XP_002528174.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532386|gb|EEF34181.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 318/808 (39%), Positives = 448/808 (55%), Gaps = 63/808 (7%)

Query: 1    MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALR 60
            MG+E NF +E+L  +E+W LFE  +G     P     A  IV+   GLP+ I   AKAL+
Sbjct: 288  MGAERNFRLEVLTLDESWSLFEKTIGGLG-NPEFVYAAREIVQHLAGLPLMITATAKALK 346

Query: 61   NKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKS- 119
             K  S  WKNA  E+    +       GK ++A++LSY+ L   +++ +F LC L+ KS 
Sbjct: 347  GKNLS-VWKNASKEISKVDDG----VQGKLFSALELSYNHLDDNEVRSLFLLCGLLGKSD 401

Query: 120  FFASDLFKYCIGLGIFRGIDMED-ARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHDV 178
                DL KY IGLG+       D AR +++ ++ ELK SCLLL+G       +HD++ D 
Sbjct: 402  IRIQDLLKYSIGLGLLYDTRTVDYARRRVHAMISELKSSCLLLDGEMNGFVKIHDLIQDF 461

Query: 179  AILIACGEQKEFLVRNGDVWE-WPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLS 237
            A+ IA  EQ+ F + N    E WPDEDALK C  IS    +  +LPE LE P LE LLLS
Sbjct: 462  AVSIAYREQQVFTINNYIRLEVWPDEDALKSCTRISLPCLNVVKLPEVLESPNLEFLLLS 521

Query: 238  SEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITII 297
            +E  S+   IP  FF G+  LKV+D   M   SLP S+  L +L+TLCLD+  L DI II
Sbjct: 522  TEEPSL--RIPGSFFQGIPILKVLDFCGMSFSSLPPSLGCLEHLRTLCLDHCLLHDIAII 579

Query: 298  GKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMS 357
            G+LK LEIL+   SDIVE P E+G+L++L+LLDL++C  L V   NV++    LEELYM+
Sbjct: 580  GELKKLEILTFAHSDIVELPREIGELSRLKLLDLSHCSKLNVFPANVLSRLCLLEELYMA 639

Query: 358  NCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILI 417
            N FV WK+E       +S ASLDEL+ L  LT+LEI + +   LP   F ++L+R+KILI
Sbjct: 640  NSFVRWKIE---GLMNQSNASLDELVLLSHLTSLEIQILDARILPRDLFTKKLQRYKILI 696

Query: 418  GDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKL-QGIRKVEYLCL 476
            GD           DW      H      ++ R+LKLKLN       ++ Q +   + L L
Sbjct: 697  GDEW---------DW----NGH-----DETSRVLKLKLNTSIHSEYEVNQFLEGTDDLSL 738

Query: 477  DKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLIN 536
               +GV +IL+ L+++GF QLK L+VQN P++  +V++ E V   AFPLL+ L L+NL+N
Sbjct: 739  ADARGVNSILYNLNSEGFPQLKRLIVQNCPEIHCLVNASESVPTVAFPLLKSLLLENLMN 798

Query: 537  LKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAI 596
            L++ C   L   SFSELR++KV +C+EL N+   S  + L  LQ + VI C  + EIF  
Sbjct: 799  LEKFCHGELVGGSFSELRSIKVRSCNELKNLLSFSMVRFLMQLQEMEVIDCRNVMEIFKY 858

Query: 597  GGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCC------------EV-----KGP 639
             G + D+ D   A+      ++R L+L  LP+L SFC             E+      GP
Sbjct: 859  EGADSDIEDKAAAL-----TRLRSLTLERLPKLNSFCSIKEPLTIDPGLEEIVSESDYGP 913

Query: 640  SMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASM 699
            S+P  LF     +P LE L L  I  ++IWH +       L  LIV  C+  K++F  SM
Sbjct: 914  SVP--LFQ----VPTLEDLILSSIPCETIWHGELSTACSHLKSLIVENCRDWKYLFTLSM 967

Query: 700  IKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPC--FAFRRVTNISLCHLPELTCLYPGLH 757
            I+S  +L+ LEI NC  ++ II      +E       F R+  + L +L +++ L  G  
Sbjct: 968  IRSFIRLEKLEICNCEFMEGIIRTEEFSEEEGMIKLMFPRLNFLKLKNLSDVSSLRIGHG 1027

Query: 758  TSEWPELKKLEVFSCDKLNTFASESFSF 785
              E P L+ LE+   + L    S +  F
Sbjct: 1028 LIECPSLRHLELNRLNDLKNIWSRNIHF 1055

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera]

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 336/939 (35%), Positives = 485/939 (51%), Gaps = 137/939 (14%)

Query: 1    MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALR 60
            M ++ +F +E L  +EAW LF+  +G+    P +   AT + KEC GLPIAI  +AKAL+
Sbjct: 297  MSTQKDFGVEHLQGDEAWILFKNMVGDSIENPDLLLIATDVAKECTGLPIAIVTVAKALK 356

Query: 61   NKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSF 120
            NK  S  WK+AL +L+  T  N      K Y+ +KLSY  L+G+++K +F LC L     
Sbjct: 357  NKNVS-IWKDALKQLKTQTSTNITGMGTKVYSTLKLSYKHLEGDEVKSLFLLCGLFSNYI 415

Query: 121  FASDLFKYCIGLGIFRGID-MEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHDVA 179
               DL KY +GL +F+G + +E+A+N++ TLV  LK S LLLE      F MHDVV +VA
Sbjct: 416  DIRDLLKYGMGLRLFQGTNTLEEAKNRIETLVDNLKASNLLLETRYNAVFRMHDVVQNVA 475

Query: 180  ILIACGEQKEFLVRNG-DVWEWPDEDALKKCYAISWIDSSG-GELPEGLECPQLELLLLS 237
            I IA  E   F  + G  + EWP+ D L+K + + ++D     ELPEGL           
Sbjct: 476  IEIASKEHHVFTFQTGVRMEEWPNMDELQK-FTMIYLDCCDIRELPEGLN---------- 524

Query: 238  SEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITII 297
              H+S  + IP  FF GM++LKV+D TNM L SLPSS+  L NL+TLCLD   LGDITII
Sbjct: 525  --HNS-SLKIPNTFFEGMKQLKVLDFTNMHLPSLPSSLHCLANLRTLCLDACKLGDITII 581

Query: 298  GKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMS 357
             +LK LEILSL++SDI + P EL +LT LRLLDL     LKVI P+VI+S ++LE+L M 
Sbjct: 582  AELKKLEILSLMDSDIEQLPRELSQLTHLRLLDLKGSSKLKVIPPDVISSLSQLEDLCME 641

Query: 358  NCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILI 417
            N + +W+VE       KS A L EL  L  LTTL+I + +    P+      L +++I +
Sbjct: 642  NSYTQWEVEG------KSNAYLAELKHLSYLTTLDIQIPDAKLFPKDVVFDNLMKYRIFV 695

Query: 418  GDR-SFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGI----RKVE 472
            GD  S+E     +K                      LKLN     L  ++GI    R  E
Sbjct: 696  GDVWSWEENCETNK---------------------TLKLNEFDTSLHLVEGISKLLRXTE 734

Query: 473  YLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDC-DAFPLLELLSL 531
             L L   +G  NIL +LD Q F +LKHL V+++P++  I++S ++     AFP++E L L
Sbjct: 735  DLHLHDLRGTTNILSKLDRQCFLKLKHLNVESSPEIRSIMNSMDLTPSHHAFPVMETLFL 794

Query: 532  QNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMK 591
            + LINL+ +C  +  + SF  LR ++VE+CD L  +F LS  + L  L+ I + +C  M 
Sbjct: 795  RQLINLQEVCHGQFPSGSFGFLRKVEVEDCDSLKFLFSLSMARGLSRLKEITMTRCKSMG 854

Query: 592  EIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVK-GPSMPPSLFNGKV 650
            EI   G +E  + D ++A+    F ++RYL+L +LP+L +FC E     S P S   G+ 
Sbjct: 855  EIVPQGRKE--IKDGDDAVNVPLFPELRYLTLQDLPKLINFCFEENLMLSKPVSTIAGRS 912

Query: 651  VLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLE 710
                         N   +W+ Q    F  L  L++  C  L  +F +S+ +SL+ L+ L+
Sbjct: 913  T---------SLFNQAEVWNGQLSLSFGNLRSLMMQNCMSLLKVFPSSLFQSLQNLEVLK 963

Query: 711  IRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVF 770
            + NC  L+ I    G   +                         G H    P+L+++ + 
Sbjct: 964  VENCNQLEEIFDLEGLNVD-------------------------GGHVGLLPKLEEMCLT 998

Query: 771  SCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQ 830
             C                      +P             LEEL L    I+ + Q  FP 
Sbjct: 999  GC----------------------IP-------------LEELILDGSRIIEIWQEQFPV 1023

Query: 831  DHLFGSLKDLEVRD--DDSASVPIGLLEKFHGLENLNLSFC-SYKELFSNGGQV----HL 883
            +  F  L+ L + +  D    +P  +L++ H LE L +  C S KE+    G V    H 
Sbjct: 1024 ES-FCRLRVLSICEYRDILVVIPSSMLQRLHTLEKLTVRSCGSVKEVVQLEGLVDEENHF 1082

Query: 884  -----IKKLELICLNDLEYLWIPNSKMGDSILQNLEILK 917
                 +++LEL  L +L+YLW  NS +G    QNLEILK
Sbjct: 1083 RALARLRELELNDLPELKYLWKENSNVGPH-FQNLEILK 1120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488108|ref|XP_003633701.1| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 345/992 (34%), Positives = 507/992 (51%), Gaps = 112/992 (11%)

Query: 1    MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALR 60
            M ++ +F ++ L E+E W LF+   G+ +  P ++  A  + KEC GLP+AI  +AKAL+
Sbjct: 299  MDTQKDFRVQPLQEDETWILFKNTAGSIE-NPELQPIAVDVAKECAGLPLAIVTVAKALK 357

Query: 61   NKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSF 120
            NK  S  WK+AL +L+  T  N        Y+++KLSY+ LKG ++K  F LC L+ ++ 
Sbjct: 358  NKNVS-IWKDALQQLKSQTLTNVTGLTTNVYSSLKLSYEHLKGVEVKSFFLLCGLISQND 416

Query: 121  FA-SDLFKYCIGLGIFRGID-MEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHDV 178
             +  DL KY +GL +F+G + +E+A+N++  LV  LK S  LLE        MHD+V   
Sbjct: 417  ISIRDLLKYGVGLRLFQGTNTLEEAKNRIDALVDNLKSSNFLLETGHNAFVRMHDLVRST 476

Query: 179  AILIACGEQKEFLVRNGDVW--EWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLL 236
            A  IA  +   F ++N  V    WP  D L+K   +S  D    ELPEGL CP+LEL   
Sbjct: 477  ARKIASDQHHVFTLQNTTVRVEGWPRIDELQKVTWVSLHDCDIRELPEGLACPKLELFGC 536

Query: 237  SSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITI 296
               +++  V IP  FF  M++LKV+DL+ MQL SLP S     NL+TLCLD   LG+I I
Sbjct: 537  YDVNTNSAVQIPNNFFEEMKQLKVLDLSRMQLPSLPLSCHCRTNLRTLCLDGCNLGEIVI 596

Query: 297  IGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYM 356
            I +LK LEILSL  SDI + P E+ +LT LRL DL   + LKVI P+VI+S ++LE+L M
Sbjct: 597  IAELKKLEILSLTYSDIEKLPREIAQLTHLRLFDLKGSYKLKVIPPDVISSLSQLEDLCM 656

Query: 357  SNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKIL 416
             N F +W  E EG    KS A L EL  L  LT+L+I + +   LP+      L R++I 
Sbjct: 657  ENSFTQW--EGEG----KSNACLAELKHLSHLTSLDIQIPDAKLLPKDIVFDTLVRYRIF 710

Query: 417  IGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGI----RKVE 472
            +GD            W  IS ++             L+LN     L  + GI    ++ E
Sbjct: 711  VGD---------VWSWGGISEAN-----------KTLQLNKFDTSLHLVDGIIKLLKRTE 750

Query: 473  YLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDC-DAFPLLELLSL 531
             L L +  G  N+L +LD +GF +LKHL V+++P++ +IV+S ++     AFP++E LSL
Sbjct: 751  DLHLRELCGGTNVLSKLDGEGFLKLKHLNVESSPEIQYIVNSMDLTPSHGAFPVMETLSL 810

Query: 532  QNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMK 591
              LINL+ +C  +    SF  LR ++VE+CD L  +F LS  + L  L+   V +C  M 
Sbjct: 811  NQLINLQEVCRGQFPAGSFGCLRKVEVEDCDGLKFLFSLSVARGLSRLEETKVTRCKSMV 870

Query: 592  EIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCE-----------VKGPS 640
            E+ + G +E       +A+    F ++R L+L +LP+L +FC E           + GPS
Sbjct: 871  EMVSQGRKEI----KEDAVNVPLFPELRSLTLEDLPKLSNFCFEENPVLSKPASTIVGPS 926

Query: 641  MP----PSLFNGKVVLP---NLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKF 693
             P    P + +G+++     NL +L L +    S+     P   Q L  L V  C KL+ 
Sbjct: 927  TPPLNQPEIRDGQLLFSLGGNLRSLNLKK--CMSLLKLFPPSLLQNLQELTVENCDKLEQ 984

Query: 694  MF----------YASMIKSLEQLQHLE------IRNCTGLQVIISEGGPGQEPPCFAFRR 737
            +F          +  ++  L +L+ ++      I NC   +                F +
Sbjct: 985  VFDLEELNVDDGHVGLLPKLGKLRLIDLPKLRHICNCGSSRNHFPSSMASAPVGNIIFPK 1044

Query: 738  VTNISLCHLPELTC-LYPGLHT------------------SEWPELKKLEVFSCDKLNTF 778
            +  ISL  LP LT  + PG H+                    WP L++L V  C KL+ F
Sbjct: 1045 LFYISLGFLPNLTSFVSPGYHSLQRLHHADLDTPFPVLFDERWPLLEELRVSECYKLDVF 1104

Query: 779  ASESFSFHSNE-KKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSL 837
            A E+ +F     +  L +P   FF     FPNLEEL L       +    FP D  F  L
Sbjct: 1105 AFETPTFQQRHGEGNLDMPL--FFLPHVAFPNLEELRLGDNRDTEIWPEQFPVDS-FPRL 1161

Query: 838  KDLEVRD--DDSASVPIGLLEKFHGLENLNLSFC-SYKELFSNGG--------QVHLIKK 886
            + L V D  D    +P  +L++ H LE L +  C S KE+F   G        ++  +++
Sbjct: 1162 RVLHVHDYRDILVVIPSFMLQRLHNLEVLKVGSCSSVKEVFQLEGLDEENQAKRLGRLRE 1221

Query: 887  LELICLNDLEYLWIPNSKMGDSILQNLEILKT 918
            +EL  L  L  LW  NS+ G   LQ+LE L+ 
Sbjct: 1222 IELHDLPGLTRLWKENSEPGLD-LQSLESLEV 1252

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	922
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.453	0.454	0.294	2.8e-39
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.617	0.577	0.240	2e-30
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.336	0.341	0.270	5.4e-27
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.326	0.334	0.310	3.4e-23
TAIR|locus:2203881	893	AT1G62630 [Arabidopsis thalian	0.210	0.217	0.339	6.5e-22
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.326	0.395	0.299	1.3e-21
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.330	0.345	0.285	2.9e-21
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.329	0.341	0.284	4.4e-21
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.203	0.210	0.304	1.1e-20
TAIR|locus:2031356	884	AT1G63360 [Arabidopsis thalian	0.210	0.219	0.344	1.6e-20

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
 Identities = 128/435 (29%), Positives = 196/435 (45%)

Query:     1 MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALR 60
             M +  N  +  L E+EAW LF   +G       +K  A  +  EC GLP+AI  I + LR
Sbjct:   261 MMTNENIKVACLQEKEAWELFCHNVGEVANSDNVKPIAKDVSHECCGLPLAIITIGRTLR 320

Query:    61 NKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSF 120
              K + E WK+ L+ L+    +    E  K +  +KLSYD L+ + +K  F  C+L P+ +
Sbjct:   321 GKPQVEVWKHTLNLLKRSAPSIDTEE--KIFGTLKLSYDFLQ-DNMKSCFLFCALFPEDY 377

Query:   121 F--ASDLFKYCIGLGIFRGID-MEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHD 177
                 S+L  Y +  G+  G    ED  N+  TLV  LKDSCLL +G SC    MHDVV D
Sbjct:   378 SIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKMHDVVRD 437

Query:   178 VAI--LIACGEQKEFLVRNG-DVWEWPDEDALKKCYAISWIDXXXXXXXXXXXXXXXXXX 234
              AI  + + GE    LV  G  + E+P +  +     +S +                   
Sbjct:   438 FAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNVIEGVETLV 497

Query:   235 XXXXXXXXVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCL-DYSTLGD 293
                     V   +P  F      L+++DL+ +++ +LP S   L +L++L L +   L +
Sbjct:   498 LLLQGNSHVK-EVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRN 556

Query:   294 ITIIGKLKNLEILSLIESDIVEFPEEXXXXXXXXXXXXXNCFHLKVIAPNVIASFTRLEE 353
             +  +  L  L+ L L ES I E P               N + L+ I    I   + LE 
Sbjct:   557 LPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSSLEV 616

Query:   354 LYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGF--FVRELE 411
             L M+     W ++ E    ++ +A+LDE+  LP L  L I + +  +    F    + L 
Sbjct:   617 LDMAGSAYSWGIKGE---EREGQATLDEVTCLPHLQFLAIKLLDVLSFSYEFDSLTKRLT 673

Query:   412 RFKILIGD-RSFEPP 425
             +F+ L    RS  PP
Sbjct:   674 KFQFLFSPIRSVSPP 688

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
 Identities = 147/612 (24%), Positives = 269/612 (43%)

Query:     1 MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALR 60
             M ++ +  ++ L EE+AW LF    G+      ++  A  + +ECGGLP+AI  +  A+R
Sbjct:   291 MKTDLDVRVDCLLEEDAWELFCKNAGDVVRSDHVRKIAKAVSQECGGLPLAIITVGTAMR 350

Query:    61 NKTESECWKNALHELR--MPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPK 118
              K   + W + L +L   +P   +      K +  +KLSYD L+ ++ K  F LC+L P+
Sbjct:   351 GKKNVKLWNHVLSKLSKSVPWIKSIEE---KIFQPLKLSYDFLE-DKAKFCFLLCALFPE 406

Query:   119 SFF--ASDLFKYCIGLGIFRGI-DMEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVV 175
              +    +++ +Y +  G    +   ED+ N+  T V  LKD CLL +G       MHDVV
Sbjct:   407 DYSIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHDVV 466

Query:   176 HDVAILIACGEQKEF--LVRNGDVWEWPDEDALKKCYA-ISWIDXXXXXXXXXXXXXXXX 232
              D AI I    Q +   LV +G   +   +D L      +S ++                
Sbjct:   467 RDFAIWIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFCVK 526

Query:   233 XXXXXXXXXXVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCL-DYST 290
                       +   +P  F      L++++L+  ++ S PS S+  L +L +L L D   
Sbjct:   527 TSVLLLQGNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDCFK 586

Query:   291 LGDITIIGKLKNLEILSLIESDIVEFPEEXXXXXXXXXXXXXNCFHLKVIAPNVIASFTR 350
             L  +  +  L  LE+L L  + I+EFP                  HL+ I   V++  + 
Sbjct:   587 LVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSRLSS 646

Query:   351 LEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL--PEGFFVR 408
             LE L M++    W V+ E   ++K +A+++E+  L RL  L I + +   L      +++
Sbjct:   647 LETLDMTSSHYRWSVQGE---TQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWIK 703

Query:   409 ELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKT-ICLRKLQG 467
              L++F++++G R     +    D  R++ SH L +   S+  L   L + T + L   QG
Sbjct:   704 RLKKFQLVVGSRYI---LRTRHDKRRLTISH-LNVSQVSIGWL---LAYTTSLALNHCQG 756

Query:   468 IRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNP--DLLFIVDSREIVDC-DAFP 524
             I  +    +   +G KN+      +  + ++++++  N   +++    S++  D  D  P
Sbjct:   757 IEAMMKKLVSDNKGFKNL------KSLT-IENVIINTNSWVEMVSTNTSKQSSDILDLLP 809

Query:   525 XXXXXXXXXXXXXKRICVDRLSTESFSELRTMKVEN---CDELSNIFVLSTTKCLPSLQR 581
                                 L T    +L T+K+     C +L  +        +P+L+ 
Sbjct:   810 NLEELHLRRVDLET---FSELQTHLGLKLETLKIIEITMCRKLRTLLDKRNFLTIPNLEE 866

Query:   582 IAVIKCNKMKEI 593
             I +  C+ ++ +
Sbjct:   867 IEISYCDSLQNL 878

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 5.4e-27, Sum P(2) = 5.4e-27
 Identities = 88/325 (27%), Positives = 145/325 (44%)

Query:     1 MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPR--MKSTATHIVKECGGLPIAIEPIAKA 58
             MG+E    +E L ++ AW LF  K+   DL+    ++  A  IV +CGGLP+A+  +  A
Sbjct:   299 MGAEYKLRVEFLEKKHAWELFCSKVWRKDLLESSSIRRLAEIIVSKCGGLPLALITLGGA 358

Query:    59 LRNKTESECWKNALHEL-RMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMP 117
             + ++   E W +A   L R P E    + +   +  +K SYD L+ + L+  F  C+L P
Sbjct:   359 MAHRETEEEWIHASEVLTRFPAEM---KGMNYVFALLKFSYDNLESDLLRSCFLYCALFP 415

Query:   118 K--SFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVV 175
             +  S     L +Y +G G        +   K Y L+ +LK +CLL  G    +  MH+VV
Sbjct:   416 EEHSIEIEQLVEYWVGEGFLTSSHGVNTIYKGYFLIGDLKAACLLETGDEKTQVKMHNVV 475

Query:   176 HDVAILIAC--GEQKEFLVRNGDVW--EWPDEDALKKCYAISWIDXXXXXXXXXXXXXXX 231
                A+ +A   G  KE ++    +   E P  +  ++   IS +D               
Sbjct:   476 RSFALWMASEQGTYKELILVEPSMGHTEAPKAENWRQALVISLLDNRIQTLPEKLICPKL 535

Query:   232 XXXXXXXXXXXVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTL 291
                            IP  FF  M  L+V+DL+   +  +P SI  LV L  L +  + +
Sbjct:   536 TTLMLQQNSSLK--KIPTGFFMHMPVLRVLDLSFTSITEIPLSIKYLVELYHLSMSGTKI 593

Query:   292 GDITI-IGKLKNLEILSLIESDIVE 315
               +   +G L+ L+ L L  +  ++
Sbjct:   594 SVLPQELGNLRKLKHLDLQRTQFLQ 618

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
 Identities = 102/329 (31%), Positives = 157/329 (47%)

Query:     1 MGSEANFSIEILNEEEAWRLFEVKLGNDDLI--PRMKSTATHIVKECGGLPIAIEPIAKA 58
             MG      +  L  E+AW LF+ K+G++ L   P +   A  + ++C GLP+A+  I + 
Sbjct:   298 MGDHKPMQVNCLEPEDAWELFKNKVGDNTLSSDPVIVELAREVAQKCRGLPLALNVIGET 357

Query:    59 LRNKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPK 118
             + +KT  + W++A+H         F     K    +K SYD+L  E +K  F  C+L P+
Sbjct:   358 MSSKTMVQEWEHAIHVFNTSAAE-FSDMQNKILPILKYSYDSLGDEHIKSCFLYCALFPE 416

Query:   119 S--FFASDLFKYCIGLGIFRGID--MEDARNKLYTLVHELKDSCLLLE-G-YSCREFSMH 172
                 +   L  Y I  G F G D  ++ ARNK Y ++  L  + LL + G Y C    MH
Sbjct:   417 DGEIYNEKLIDYWICEG-FIGEDQVIKRARNKGYAMLGTLTRANLLTKVGTYYC---VMH 472

Query:   173 DVVHDVAILIAC--GEQKE-FLVRNG-DVWEWP---DEDALKKCYAISWIDXXXXXXXXX 225
             DVV ++A+ IA   G+QKE F+V+ G  + E P   D  A++K   +S +D         
Sbjct:   473 DVVREMALWIASDFGKQKENFVVQAGVGLHEIPKVKDWGAVRK---MSLMDNDIEEITCE 529

Query:   226 XXXXXXXXXXXXXXXXXVDVNIPQRFFTGMRELKVVDLT-NMQLFSLPSSIDLLVNLQTL 284
                                 N+P  F   M++L V+DL+ N     LP  I  LV+LQ L
Sbjct:   530 SKCSELTTLFLQSNKLK---NLPGAFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFL 586

Query:   285 CLDYSTLGDITI-IGKLKNLEILSLIESD 312
              L  +++  + I + +LK L  L L  +D
Sbjct:   587 DLSNTSIEHMPIGLKELKKLTFLDLTYTD 615

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2203881 AT1G62630 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 6.5e-22, Sum P(3) = 6.5e-22
 Identities = 70/206 (33%), Positives = 103/206 (50%)

Query:     1 MGSEANFSIEILNEEEAWRLFEVKLGNDDL--IPRMKSTATHIVKECGGLPIAIEPIAKA 58
             MG E    ++ L E  A+ LF+ K+G   L   P +   A  + K+C GLP+A+  I + 
Sbjct:   298 MGDEEPMEVQCLEENVAFDLFQKKVGQKTLGSDPGIPQLARIVAKKCCGLPLALNVIGET 357

Query:    59 LRNKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPK 118
             +  K   + W+NA+H L          E  K    +K SYD LKGE +K     C+L P+
Sbjct:   358 MSCKRTIQEWRNAIHVLNSYAAEFIGME-DKILPLLKYSYDNLKGEHVKSSLLYCALYPE 416

Query:   119 S--FFASDLFKYCIGLGIFRGID-MEDARNKLYTLVHELKDSCLLLEGYSCREFS---MH 172
                    DL ++ I   I  G + +E A +K Y ++  L  + LL+E    +  S   MH
Sbjct:   417 DAKIRKEDLIEHWICEEIIDGSEGIEKAEDKGYDIIGSLVRASLLMECVDLKGKSSVIMH 476

Query:   173 DVVHDVAILIAC--GEQKE-FLVRNG 195
             DVV ++A+ IA   G QKE F+VR G
Sbjct:   477 DVVREMALWIASELGIQKEAFIVRAG 502

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
 Identities = 96/321 (29%), Positives = 150/321 (46%)

Query:     1 MGSEANFSIEILNEEEAWRLFEVKLGNDDLI--PRMKSTATHIVKECGGLPIAIEPIAKA 58
             MG      ++ L  E+AW LF+ K+G++ L   P +   A  + ++C GLP+A+  I + 
Sbjct:   187 MGDHKPMQVKCLEPEDAWELFKNKVGDNTLRSDPVIVELAREVAQKCRGLPLALSVIGET 246

Query:    59 LRNKTESECWKNALHEL-RMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMP 117
             + +KT  + W++A+  L R   E  F     K    +K SYD+L  E +K  F  C+L P
Sbjct:   247 MASKTMVQEWEHAIDVLTRSAAE--FSNMGNKILPILKYSYDSLGDEHIKSCFLYCALFP 304

Query:   118 KS--FFASDLFKYCIGLGIFRGID--MEDARNKLYTLVHELKDSCLLLEGYSCREFSMHD 173
             +    +   L  Y I  G F G D  ++ ARNK Y ++  L  + LL +        MHD
Sbjct:   305 EDDEIYNEKLIDYWICEG-FIGEDQVIKRARNKGYEMLGTLTLANLLTK-VGTEHVVMHD 362

Query:   174 VVHDVAILIAC--GEQKE-FLVR-NGDVWEWPDEDALKKCYAISWIDXXXXXXXXXXXXX 229
             VV ++A+ IA   G+QKE F+VR    + E P+         +S +D             
Sbjct:   363 VVREMALWIASDFGKQKENFVVRARVGLHERPEAKDWGAVRRMSLMDNHIEEITCESKCS 422

Query:   230 XXXXXXXXXXXXXVDVNIPQRFFTGMRELKVVDLT-NMQLFSLPSSIDLLVNLQTLCLDY 288
                             N+   F   M++L V+DL+ N     LP  I  LV+LQ L L  
Sbjct:   423 ELTTLFLQSNQLK---NLSGEFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSN 479

Query:   289 STLGDITI-IGKLKNLEILSL 308
             +++  + + + KLK L  L+L
Sbjct:   480 TSIKQLPVGLKKLKKLTFLNL 500

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
 Identities = 92/322 (28%), Positives = 146/322 (45%)

Query:     1 MGSEANFSIEILNEEEAWRLFEVKLGNDDLI--PRMKSTATHIVKECGGLPIAIEPIAKA 58
             MG      +  L  ++AW LF+ K+G+  L   P +   A  + + C GLP+A+  I + 
Sbjct:   301 MGVHDPMEVRCLGADDAWDLFKKKVGDITLSSHPDIPEIARKVAQACCGLPLALNVIGET 360

Query:    59 LRNKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPK 118
             +  K  ++ W  A+ ++      NF     +    +K SYD L+ E +K  F  CSL P+
Sbjct:   361 MACKKTTQEWDRAV-DVSTTYAANFGAVKERILPILKYSYDNLESESVKTCFLYCSLFPE 419

Query:   119 SFFASD--LFKYCIGLGIFRGID-MEDARNKLYTLVHELKDSCLLLEG--YSCREF-SMH 172
                     L  Y I  G   G +  + A  + Y ++  L  + LL+EG  ++ + +  MH
Sbjct:   420 DDLIEKERLIDYWICEGFIDGDENKKGAVGEGYEILGTLVCASLLVEGGKFNNKSYVKMH 479

Query:   173 DVVHDVAILIACGEQKE---FLVRNG-DVWEWPDEDALKKCYAISWIDXXXXXXXXXXXX 228
             DVV ++A+ IA   +K     +VR G  + E P     K    +S ++            
Sbjct:   480 DVVREMALWIASDLRKHKDNCIVRAGFRLNEIPKVKDWKVVSRMSLVNNRIKEIHGSPEC 539

Query:   229 XXXXXXXXXXXXXXVDVNIPQRFFTGMRELKVVDLT-NMQLFSLPSSIDLLVNLQTLCLD 287
                           V  NI   FF  M  L V+DL+ N+ L  LP  I  LV+L+ L L 
Sbjct:   540 PKLTTLFLQDNRHLV--NISGEFFRSMPRLVVLDLSWNVNLSGLPDQISELVSLRYLDLS 597

Query:   288 YSTLGDITI-IGKLKNLEILSL 308
             YS++G + + + KLK L  L+L
Sbjct:   598 YSSIGRLPVGLLKLKKLMHLNL 619

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
 Identities = 91/320 (28%), Positives = 141/320 (44%)

Query:     1 MGSEANFSIEILNEEEAWRLFEVKLGNDDL--IPRMKSTATHIVKECGGLPIAIEPIAKA 58
             MG +    +  L  EE+W LF++K+G + L   P +   A  + ++C GLP+A+  I +A
Sbjct:   302 MGVDDPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGEA 361

Query:    59 LRNKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPK 118
             +  K     W +A+  L   +  +F     +    +K SYD L GE +K  F  CSL P+
Sbjct:   362 MACKRTVHEWCHAIDVLTS-SAIDFSGMEDEILHVLKYSYDNLNGELMKSCFLYCSLFPE 420

Query:   119 SFFASD--LFKYCIGLGIFRGIDMEDAR-NKLYTLVHELKDSCLLLEGYSCRE-FSMHDV 174
              +      L  Y I  G     +  +   N+ Y ++  L  +CLLLE    +    MHDV
Sbjct:   421 DYLIDKEGLVDYWISEGFINEKEGRERNINQGYEIIGTLVRACLLLEEERNKSNVKMHDV 480

Query:   175 VHDVAILIAC--GEQKE-FLVRNG-DVWEWPDEDALKKCYAISWIDXXXXXXXXXXXXXX 230
             V ++A+ I+   G+QKE  +VR G  + E P    +K    +  I               
Sbjct:   481 VREMALWISSDLGKQKEKCIVRAGVGLREVPK---VKDWNTVRKISLMNNEIEEIFDSHE 537

Query:   231 XXXXXXXXXXXXVDVNIPQRFFTGMRELKVVDLT-NMQLFSLPSSIDLLVNLQTLCLDYS 289
                           V I   FF  M  L V+DL+ N  L  LP  I  L +L+   L Y+
Sbjct:   538 CAALTTLFLQKNDVVKISAEFFRCMPHLVVLDLSENQSLNELPEEISELASLRYFNLSYT 597

Query:   290 TLGDITI-IGKLKNLEILSL 308
              +  + + +  LK L  L+L
Sbjct:   598 CIHQLPVGLWTLKKLIHLNL 617

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
 Identities = 60/197 (30%), Positives = 92/197 (46%)

Query:     1 MGSEANFSIEILNEEEAWRLFEVKLGNDDL--IPRMKSTATHIVKECGGLPIAIEPIAKA 58
             MG      ++ L+  +AW LF+ K+G   L   P +   A  +  +C GLP+A+  I + 
Sbjct:   299 MGVHDPMEVQCLSTNDAWELFQEKVGQISLGSHPDILELAKKVAGKCRGLPLALNVIGET 358

Query:    59 LRNKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPK 118
             +  K   + W +A+  L       F          +K SYD L  + ++  FQ C+L P+
Sbjct:   359 MAGKRAVQEWHHAVDVLTSYAAE-FSGMDDHILLILKYSYDNLNDKHVRSCFQYCALYPE 417

Query:   119 SFFASD--LFKYCIGLGIFRG-IDMEDARNKLYTLVHELKDSCLLLE-GYSCREFSMHDV 174
              +      L  Y I  G   G I  E A N+ Y ++  L  +CLL E G +  E  MHDV
Sbjct:   418 DYSIKKYRLIDYWICEGFIDGNIGKERAVNQGYEILGTLVRACLLSEEGKNKLEVKMHDV 477

Query:   175 VHDVAI--LIACGEQKE 189
             V ++A+  L   G+ KE
Sbjct:   478 VREMALWTLSDLGKNKE 494

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2031356 AT1G63360 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 1.6e-20, Sum P(3) = 1.6e-20
 Identities = 71/206 (34%), Positives = 104/206 (50%)

Query:     1 MGSEANFSIEILNEEEAWRLFEVKLGNDDL--IPRMKSTATHIVKECGGLPIAIEPIAKA 58
             MG E    ++ L E  A+ LF+ K+G   L   P +   A  + K+C GLP+A+  I + 
Sbjct:   298 MGVEHPMEVQCLEENVAFDLFQKKVGQTTLGSDPGIPQLARIVAKKCCGLPLALNVIGET 357

Query:    59 LRNKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPK 118
             +  K   + W++A+H L          E  K    +K SYD LKGEQ+K     C+L P+
Sbjct:   358 MSCKRTIQEWRHAIHVLNSYAAEFIGME-DKVLPLLKYSYDNLKGEQVKSSLLYCALYPE 416

Query:   119 S--FFASDLFKYCIGLGIFRGID-MEDARNKLYTLVHELKDSCLLLE---GYSCREFSMH 172
                    DL ++ I   I  G + +E A +K Y ++  L  + LL+E   G   R   MH
Sbjct:   417 DAKILKEDLIEHWICEEIIDGSEGIEKAEDKGYEIIGCLVRASLLMEWDDGDGRRAVCMH 476

Query:   173 DVVHDVAILIAC--GEQKE-FLVRNG 195
             DVV ++A+ IA   G QKE F+VR G
Sbjct:   477 DVVREMALWIASELGIQKEAFIVRAG 502

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.03110007 cc-nbs-lrr resistance protein (1315 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	922
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	1e-15
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.002

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 7/132 (5%)

Query: 7   FSIEILNEEEAWRLFEVKLG--NDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTE 64
             +E L  EE+W LF  K+        P ++  A  IV++C GLP+A++ +   L  K+ 
Sbjct: 151 HEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFKST 210

Query: 65  SECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPK--SFFA 122
            + W++ L +L           L +  + + LSYD L    LK+ F   +L P+  +   
Sbjct: 211 VQEWEHVLEQLN-NELAGRD-GLNEVLSILSLSYDNLP-MHLKRCFLYLALFPEDYNIRK 267

Query: 123 SDLFKYCIGLGI 134
             L K  I  G 
Sbjct: 268 EQLIKLWIAEGF 279

Length = 285

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 8/134 (5%)

Query: 232 ELLLLSSEHSSVDV--NIPQRFFTGMRE---LKVVDLTNMQLFSLPSSIDLLVNLQTLCL 286
            + LL S    +D+  N  +   + +R    LK +DL+   L  LP  +  L NL  L L
Sbjct: 134 LIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193

Query: 287 DYSTLGDI-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVI 345
             + + D+   I  L  LE L L  + I+E    L  L  L  L+L+N  +     P  I
Sbjct: 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN--NKLEDLPESI 251

Query: 346 ASFTRLEELYMSNC 359
            + + LE L +SN 
Sbjct: 252 GNLSNLETLDLSNN 265

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 49.1 bits (117), Expect = 1e-05
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 11/161 (6%)

Query: 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDL--LVNLQ-TLC 285
           P L  L LS   S V++    +    +  L++ +  N++  +LP+ I+L  L +L  + C
Sbjct: 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE--TLPTGINLESLESLDLSGC 835

Query: 286 LDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVI 345
               T  DI+      N+  L+L  + I E P  + K + L  LD+  C +L+ ++ N I
Sbjct: 836 SRLRTFPDIS-----TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN-I 889

Query: 346 ASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLP 386
           +    LE +  S+C    +    GS S+ + A+ +    LP
Sbjct: 890 SKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLP 930

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 18/139 (12%)

Query: 258 LKVVDLTNMQLFSLPSSIDLLV-NLQTLCLDYSTLGDI-TIIGKLKNLEILSLIESDIVE 315
           L  +DL N  +  +P  I LL  NL+ L L  + +  + + +  L NL+ L L  +D+ +
Sbjct: 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD 177

Query: 316 FPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKS 375
            P+ L  L+ L  LDL+    +  + P  I   + LEEL +SN                 
Sbjct: 178 LPKLLSNLSNLNNLDLSGN-KISDL-PPEIELLSALEELDLSN--------------NSI 221

Query: 376 KASLDELMPLPRLTTLEIA 394
              L  L  L  L+ LE++
Sbjct: 222 IELLSSLSNLKNLSGLELS 240

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 302 NLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359
           NL+ L L  + +   P+     L  L++LDL+   +L  I+P   +    L  L +S  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 63/252 (25%), Positives = 97/252 (38%), Gaps = 76/252 (30%)

Query: 479 FQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLEL-LSLQNLINL 537
             G++NI    D +G   LK +     PDL    +   +   D   L+EL  S+Q L   
Sbjct: 633 LTGLRNI----DLRGSKNLKEI-----PDLSMATNLETLKLSDCSSLVELPSSIQYL--- 680

Query: 538 KRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIG 597
                        ++L  + +  C+ L     L T   L SL R+ +  C+++K  F   
Sbjct: 681 -------------NKLEDLDMSRCENLEI---LPTGINLKSLYRLNLSGCSRLK-SF--- 720

Query: 598 GEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEA 657
              PD+  N           I +L L           E      P +L      L NL+ 
Sbjct: 721 ---PDISTN-----------ISWLDLD----------ETAIEEFPSNLR-----LENLDE 751

Query: 658 LELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYA---------SMIKSLEQLQH 708
           L LCE+  + +W    P     LT L+      L  +F +         S I++L +L+H
Sbjct: 752 LILCEMKSEKLWERVQP-----LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH 806

Query: 709 LEIRNCTGLQVI 720
           LEI NC  L+ +
Sbjct: 807 LEIENCINLETL 818

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	922
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.9
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.86
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.76
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.6
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.51
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.5
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.43
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.41
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.4
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.35
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.14
KOG4341	483	consensus F-box protein containing LRR [General fu	99.14
KOG4341	483	consensus F-box protein containing LRR [General fu	99.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.02
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.97
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.92
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.83
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.77
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.77
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.48
PRK15386	426	type III secretion protein GogB; Provisional	98.46
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.44
PLN03150	623	hypothetical protein; Provisional	98.43
PRK15386	426	type III secretion protein GogB; Provisional	98.39
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.38
PLN03150	623	hypothetical protein; Provisional	98.36
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.35
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.15
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.12
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.07
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.02
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.99
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.96
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.95
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.94
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.86
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.74
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.69
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.68
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.66
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.61
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.6
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.42
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.38
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.34
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.3
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.75
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.26
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.19
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.14
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.67
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.66
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.66
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.62
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.55
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.35
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.44
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.14
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.06
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.67
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.03
PRK04841	903	transcriptional regulator MalT; Provisional	90.92
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.79
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.06
smart00370	26	LRR Leucine-rich repeats, outliers.	89.06
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	88.53
smart00370	26	LRR Leucine-rich repeats, outliers.	85.81
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.81

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-56  Score=517.70  Aligned_cols=328  Identities=30%  Similarity=0.470  Sum_probs=269.3

Q ss_pred             CCCcceEeCCCCCHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHHHHHHHhcCC
Q 002432            1 MGSEANFSIEILNEEEAWRLFEVKLGND--DLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMP   78 (922)
Q Consensus         1 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~~~l~~~~~~   78 (922)
                      ||+...+++++|+++|||+||+++|++.  ...++++++|++||++|+|+|||+++||+.|+.|+++++|+++.+.+...
T Consensus       306 m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~  385 (889)
T KOG4658|consen  306 MGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSS  385 (889)
T ss_pred             ccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccc
Confidence            7888999999999999999999999543  33455999999999999999999999999999999999999999988632


Q ss_pred             CCCCCccc-hHHHHHHHHHHHhcCCchhHHHHHhhcccc-CCCchhH-HHHHHHHhcCCccccc-HHHHHHHHHHHHHHH
Q 002432           79 TENNFHRE-LGKAYTAIKLSYDALKGEQLKKIFQLCSLM-PKSFFAS-DLFKYCIGLGIFRGID-MEDARNKLYTLVHEL  154 (922)
Q Consensus        79 ~~~~~~~~-~~~~~~~l~lsY~~L~~~~lk~cfly~~~f-~~~~~~~-~Li~~WiaeG~i~~~~-~e~~~~~~~~~i~~L  154 (922)
                      .... .++ .+.|+++|++|||.||++ +|.||+|||+| +||+|.+ +||.+||||||+++.. .+.|++.+++||.+|
T Consensus       386 ~~~~-~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L  463 (889)
T KOG4658|consen  386 LAAD-FSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL  463 (889)
T ss_pred             ccCC-CCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence            1111 122 344999999999999966 99999999999 8999999 9999999999999855 788999999999999


Q ss_pred             Hhhcceeccc---ccceEEecHHHHHHHHHHHc-----ccCeEEEecCCCCCCCCCccccCcceEEEeecCCCCCCCCCC
Q 002432          155 KDSCLLLEGY---SCREFSMHDVVHDVAILIAC-----GEQKEFLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGL  226 (922)
Q Consensus       155 ~~~~l~~~~~---~~~~~~mhdli~dl~~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~  226 (922)
                      |.+++++...   ....|+|||+|||||.+++.     +|..++. .+.+..+.+.......+|++++.++.+..++...
T Consensus       464 V~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~-~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~  542 (889)
T KOG4658|consen  464 VRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVS-DGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS  542 (889)
T ss_pred             HHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEE-CCcCccccccccchhheeEEEEeccchhhccCCC
Confidence            9999998764   44789999999999999999     6664332 2235555666666789999999999999999888


Q ss_pred             CCCCccEEEccCCCC-cCCCCCChHHhhCCCCCcEEEeeCC-cCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcC
Q 002432          227 ECPQLELLLLSSEHS-SVDVNIPQRFFTGMRELKVVDLTNM-QLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNL  303 (922)
Q Consensus       227 ~~~~Lr~L~l~~~~~-~~~~~l~~~~~~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L  303 (922)
                      .+++|++|.+.+|.. ..  .++..+|..++.||||||++| .+.++|++|++|.|||||+++++.+.. |.++++|+.|
T Consensus       543 ~~~~L~tLll~~n~~~l~--~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLL--EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKL  620 (889)
T ss_pred             CCCccceEEEeecchhhh--hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhh
Confidence            888999999999863 22  788888999999999999976 456889888888888888888877777 7777777777


Q ss_pred             CEEEeecCC-CcccchhhcCCCCCCEEeccC
Q 002432          304 EILSLIESD-IVEFPEELGKLTKLRLLDLTN  333 (922)
Q Consensus       304 ~~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~  333 (922)
                      ++||+..+. +..+|..+..|.+||+|.+..
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeec
Confidence            777776663 334444445566666666654

>PLN03210 Resistant to P

Probab=100.00  E-value=3.9e-49  Score=487.16  Aligned_cols=551  Identities=20%  Similarity=0.257  Sum_probs=365.1

Q ss_pred             CCCcceEeCCCCCHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHHHHHHHhcCCC
Q 002432            1 MGSEANFSIEILNEEEAWRLFEVKL-GNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPT   79 (922)
Q Consensus         1 ~~~~~~~~l~~L~~~~~~~Lf~~~~-~~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~~~l~~~~~~~   79 (922)
                      +|++++|+++.|+++|||+||+++| ++..+++++++++++||++|+|+||||+++|+.|+++ +.++|+++++++.   
T Consensus       340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~---  415 (1153)
T PLN03210        340 HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLR---  415 (1153)
T ss_pred             cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHH---
Confidence            3678899999999999999999999 5555677899999999999999999999999999998 7899999999986   


Q ss_pred             CCCCccchHHHHHHHHHHHhcCCchhHHHHHhhcccc-CCCchhHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHhhc
Q 002432           80 ENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLM-PKSFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSC  158 (922)
Q Consensus        80 ~~~~~~~~~~~~~~l~lsY~~L~~~~lk~cfly~~~f-~~~~~~~~Li~~WiaeG~i~~~~~e~~~~~~~~~i~~L~~~~  158 (922)
                       ...   ..+|+++|++||++|+++..|.||+|+|+| +++.+  +.|..|+|.+.....          ..++.|+++|
T Consensus       416 -~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~--~~v~~~l~~~~~~~~----------~~l~~L~~ks  479 (1153)
T PLN03210        416 -NGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV--NDIKLLLANSDLDVN----------IGLKNLVDKS  479 (1153)
T ss_pred             -hCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH--HHHHHHHHhcCCCch----------hChHHHHhcC
Confidence             111   134999999999999874369999999999 66544  557788887655421          1288999999


Q ss_pred             ceecccccceEEecHHHHHHHHHHHcccCeEEEecCCCCC------CC-CCccccCcceEEEeecCCCCCC--CC--CCC
Q 002432          159 LLLEGYSCREFSMHDVVHDVAILIACGEQKEFLVRNGDVW------EW-PDEDALKKCYAISWIDSSGGEL--PE--GLE  227 (922)
Q Consensus       159 l~~~~~~~~~~~mhdli~dl~~~~~~~e~~~~~~~~~~~~------~~-~~~~~~~~l~~L~l~~~~~~~l--~~--~~~  227 (922)
                      |++..  .+.++|||++|+||+.+++++.. .+.....+.      .+ .......+++.+++..+.+..+  ..  +.+
T Consensus       480 Li~~~--~~~~~MHdLl~~~~r~i~~~~~~-~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~  556 (1153)
T PLN03210        480 LIHVR--EDIVEMHSLLQEMGKEIVRAQSN-EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKG  556 (1153)
T ss_pred             CEEEc--CCeEEhhhHHHHHHHHHHHhhcC-CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhc
Confidence            99876  35799999999999999876641 001100110      00 0111234567777665554322  11  126


Q ss_pred             CCCccEEEccCCCCc----CCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCc
Q 002432          228 CPQLELLLLSSEHSS----VDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKN  302 (922)
Q Consensus       228 ~~~Lr~L~l~~~~~~----~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~  302 (922)
                      +++|+.|.+..+...    ....+|..+..-..+||+|++.++.+..+|..+ ...+|++|++.+|.+.. +..+..+++
T Consensus       557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~  635 (1153)
T PLN03210        557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTG  635 (1153)
T ss_pred             CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCC
Confidence            667777766544210    111345554222345777777777777777666 45677777777777666 666667777


Q ss_pred             CCEEEeecC-CCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCccc
Q 002432          303 LEILSLIES-DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDE  381 (922)
Q Consensus       303 L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~  381 (922)
                      |++|+++++ .++.+| .++.+++|++|++++|..+..+|.. ++++++|+.|++++|....             ..+..
T Consensus       636 Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~-------------~Lp~~  700 (1153)
T PLN03210        636 LRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLE-------------ILPTG  700 (1153)
T ss_pred             CCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcC-------------ccCCc
Confidence            777777665 355565 3666777777777777666666665 6777777777777664332             12222


Q ss_pred             CCCCCCCCEEEeeecCC-CCCCccccccccceeEEEEccCCCCCCccccccccccccccccccccccceeeEecccccch
Q 002432          382 LMPLPRLTTLEIAVEND-NALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTI  460 (922)
Q Consensus       382 l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~  460 (922)
                      + ++++|+.|+++++.. ..+|.                                                         
T Consensus       701 i-~l~sL~~L~Lsgc~~L~~~p~---------------------------------------------------------  722 (1153)
T PLN03210        701 I-NLKSLYRLNLSGCSRLKSFPD---------------------------------------------------------  722 (1153)
T ss_pred             C-CCCCCCEEeCCCCCCcccccc---------------------------------------------------------
Confidence            2 456666666655431 11110                                                         


Q ss_pred             hhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCcccccCcccccccccccccccccccc
Q 002432          461 CLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRI  540 (922)
Q Consensus       461 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  540 (922)
                            ..++|+.|++.++. +..++..+   .+++|++|.+.++.....      |.....                 +
T Consensus       723 ------~~~nL~~L~L~~n~-i~~lP~~~---~l~~L~~L~l~~~~~~~l------~~~~~~-----------------l  769 (1153)
T PLN03210        723 ------ISTNISWLDLDETA-IEEFPSNL---RLENLDELILCEMKSEKL------WERVQP-----------------L  769 (1153)
T ss_pred             ------ccCCcCeeecCCCc-cccccccc---cccccccccccccchhhc------cccccc-----------------c
Confidence                  01233444443322 11122111   345555555554322110      000000                 0


Q ss_pred             cccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccCCCCCCccCCcccccccccCcccE
Q 002432          541 CVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRY  620 (922)
Q Consensus       541 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  620 (922)
                      .  ......+++|+.|.+.+|+.+..+|.  .+.++++|+.|++++|..++.+|...                .+++|+.
T Consensus       770 ~--~~~~~~~~sL~~L~Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~~~----------------~L~sL~~  829 (1153)
T PLN03210        770 T--PLMTMLSPSLTRLFLSDIPSLVELPS--SIQNLHKLEHLEIENCINLETLPTGI----------------NLESLES  829 (1153)
T ss_pred             c--hhhhhccccchheeCCCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeCCCC----------------CccccCE
Confidence            0  00112346788888888887777643  46788889999999888887776432                5788999


Q ss_pred             EecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHH
Q 002432          621 LSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMI  700 (922)
Q Consensus       621 L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~  700 (922)
                      |++++|..+..++.                ..++|+.|++++|.++.++...  ..+++|+.|++++|++++.++..  .
T Consensus       830 L~Ls~c~~L~~~p~----------------~~~nL~~L~Ls~n~i~~iP~si--~~l~~L~~L~L~~C~~L~~l~~~--~  889 (1153)
T PLN03210        830 LDLSGCSRLRTFPD----------------ISTNISDLNLSRTGIEEVPWWI--EKFSNLSFLDMNGCNNLQRVSLN--I  889 (1153)
T ss_pred             EECCCCCccccccc----------------cccccCEeECCCCCCccChHHH--hcCCCCCEEECCCCCCcCccCcc--c
Confidence            99999988877542                2468999999999888775432  45899999999999999998653  6


Q ss_pred             hhhccccEEEEecccccceEe
Q 002432          701 KSLEQLQHLEIRNCTGLQVII  721 (922)
Q Consensus       701 ~~l~~L~~L~l~~c~~l~~l~  721 (922)
                      ..+++|+.+++++|++++.+.
T Consensus       890 ~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        890 SKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             ccccCCCeeecCCCccccccc
Confidence            788999999999999998764

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.1e-37  Score=380.24  Aligned_cols=531  Identities=18%  Similarity=0.170  Sum_probs=358.3

Q ss_pred             CcceEEEeecCCCCC-CCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc-cCchhhhccCCCCE
Q 002432          207 KKCYAISWIDSSGGE-LPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-SLPSSIDLLVNLQT  283 (922)
Q Consensus       207 ~~l~~L~l~~~~~~~-l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~  283 (922)
                      .+++.|++.++.+.. ++..+ .+++|++|++++|...  +.+|.++|..+++||+|++++|.+. .+|.  +.+++|++
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~--~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~  144 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS--GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET  144 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC--CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence            478999999998744 44433 8999999999999765  3799999889999999999999987 4564  56899999


Q ss_pred             EEccCCCCCC--ccccCCCCcCCEEEeecCCCc-ccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCc
Q 002432          284 LCLDYSTLGD--ITIIGKLKNLEILSLIESDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCF  360 (922)
Q Consensus       284 L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~  360 (922)
                      |++++|.+..  |..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNN  223 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCc
Confidence            9999999875  788999999999999999876 78999999999999999999755567776 9999999999999998


Q ss_pred             ccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC-CCCccccccccceeEEEEccCCCCCCcccccccccccccc
Q 002432          361 VEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN-ALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSH  439 (922)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~  439 (922)
                      +.+             ..+..++++++|++|++++|... .+|..+                                  
T Consensus       224 l~~-------------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l----------------------------------  256 (968)
T PLN00113        224 LSG-------------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSL----------------------------------  256 (968)
T ss_pred             cCC-------------cCChhHhcCCCCCEEECcCceeccccChhH----------------------------------
Confidence            875             56678899999999999988743 344332                                  


Q ss_pred             ccccccccceeeEecccccchhhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCccccc
Q 002432          440 FLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVD  519 (922)
Q Consensus       440 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~  519 (922)
                                                ..+++|+.|++.++......+..+  ..+++|++|++++|.....++     ..
T Consensus       257 --------------------------~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p-----~~  303 (968)
T PLN00113        257 --------------------------GNLKNLQYLFLYQNKLSGPIPPSI--FSLQKLISLDLSDNSLSGEIP-----EL  303 (968)
T ss_pred             --------------------------hCCCCCCEEECcCCeeeccCchhH--hhccCcCEEECcCCeeccCCC-----hh
Confidence                                      111233333333332211122211  244555555555553211111     01


Q ss_pred             CcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccCCC
Q 002432          520 CDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGE  599 (922)
Q Consensus       520 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  599 (922)
                      ...+++|+.|++.++......+.   ....+++|+.|++.+|. +....+ ..+..+++|+.|++++|.-...++..   
T Consensus       304 ~~~l~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~L~~n~-l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~~p~~---  375 (968)
T PLN00113        304 VIQLQNLEILHLFSNNFTGKIPV---ALTSLPRLQVLQLWSNK-FSGEIP-KNLGKHNNLTVLDLSTNNLTGEIPEG---  375 (968)
T ss_pred             HcCCCCCcEEECCCCccCCcCCh---hHhcCCCCCEEECcCCC-CcCcCC-hHHhCCCCCcEEECCCCeeEeeCChh---
Confidence            23345555555555433222221   13456677777777663 322212 23455677777777765432222211   


Q ss_pred             CCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCcccccC
Q 002432          600 EPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQR  679 (922)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~  679 (922)
                                  ...+++|+.|.+.++.-...+             +..+..+++|+.|++++|.++...+.. ...+++
T Consensus       376 ------------~~~~~~L~~L~l~~n~l~~~~-------------p~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~  429 (968)
T PLN00113        376 ------------LCSSGNLFKLILFSNSLEGEI-------------PKSLGACRSLRRVRLQDNSFSGELPSE-FTKLPL  429 (968)
T ss_pred             ------------HhCcCCCCEEECcCCEecccC-------------CHHHhCCCCCCEEECcCCEeeeECChh-HhcCCC
Confidence                        123456666666665432221             122345778888888888776543332 235788


Q ss_pred             ccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcC
Q 002432          680 LTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTS  759 (922)
Q Consensus       680 L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~  759 (922)
                      |+.|++++|. +....+ ..+..+++|+.|++++|.....++.         ....++|+.|++++|.....++..+.  
T Consensus       430 L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~---------~~~~~~L~~L~ls~n~l~~~~~~~~~--  496 (968)
T PLN00113        430 VYFLDISNNN-LQGRIN-SRKWDMPSLQMLSLARNKFFGGLPD---------SFGSKRLENLDLSRNQFSGAVPRKLG--  496 (968)
T ss_pred             CCEEECcCCc-ccCccC-hhhccCCCCcEEECcCceeeeecCc---------ccccccceEEECcCCccCCccChhhh--
Confidence            8888888854 444333 3356788888888888754433321         11246788888888866656665544  


Q ss_pred             CCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccE
Q 002432          760 EWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKD  839 (922)
Q Consensus       760 ~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~  839 (922)
                      .+++|+.|++++|.-...+|..                      +..+++|++|+|++|.+....|..+.   .+++|+.
T Consensus       497 ~l~~L~~L~Ls~N~l~~~~p~~----------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~  551 (968)
T PLN00113        497 SLSELMQLKLSENKLSGEIPDE----------------------LSSCKKLVSLDLSHNQLSGQIPASFS---EMPVLSQ  551 (968)
T ss_pred             hhhccCEEECcCCcceeeCChH----------------------HcCccCCCEEECCCCcccccCChhHh---CcccCCE
Confidence            7888999999887544455543                      25688899999999988877776654   6788999


Q ss_pred             EEeecCCCc-ccchhHHhhcCCCCeEEEecccceEEecCCccccccceEeccccccc
Q 002432          840 LEVRDDDSA-SVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLNDL  895 (922)
Q Consensus       840 L~l~~~~l~-~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~~sL~~L~i~~c~~L  895 (922)
                      |++++|.+. .+|..+ .++++|+.|++++|++....|..+.+.++....+.+++.+
T Consensus       552 L~Ls~N~l~~~~p~~l-~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l  607 (968)
T PLN00113        552 LDLSQNQLSGEIPKNL-GNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL  607 (968)
T ss_pred             EECCCCcccccCChhH-hcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccc
Confidence            999997775 567655 6789999999999988877776666566665666666544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.9e-36  Score=374.79  Aligned_cols=517  Identities=18%  Similarity=0.129  Sum_probs=379.1

Q ss_pred             CCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc-cCchhhh-ccCCCCEEEccCCCCCCccccCCCCcCCEE
Q 002432          229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-SLPSSID-LLVNLQTLCLDYSTLGDITIIGKLKNLEIL  306 (922)
Q Consensus       229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~-~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L  306 (922)
                      .+++.|+++++....  .++. .|..+++|++|+|++|.+. .+|..+. .+.+|++|++++|.+......+.+++|++|
T Consensus        69 ~~v~~L~L~~~~i~~--~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L  145 (968)
T PLN00113         69 SRVVSIDLSGKNISG--KISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETL  145 (968)
T ss_pred             CcEEEEEecCCCccc--cCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEE
Confidence            579999999987652  5554 4599999999999999997 7888765 999999999999998762223679999999


Q ss_pred             EeecCCCc-ccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCC
Q 002432          307 SLIESDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPL  385 (922)
Q Consensus       307 ~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  385 (922)
                      ++++|.++ .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+..             ..+..++++
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~-------------~~p~~l~~l  211 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVG-------------QIPRELGQM  211 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcC-------------cCChHHcCc
Confidence            99999887 78999999999999999999755677776 9999999999999998875             567888999


Q ss_pred             CCCCEEEeeecCCC-CCCccccccccceeEEEEccCCCCCCccccccccccccccccccccccceeeEecccccchhhhc
Q 002432          386 PRLTTLEIAVENDN-ALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRK  464 (922)
Q Consensus       386 ~~L~~L~l~~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~  464 (922)
                      ++|+.|++++|... .+|..                                                            
T Consensus       212 ~~L~~L~L~~n~l~~~~p~~------------------------------------------------------------  231 (968)
T PLN00113        212 KSLKWIYLGYNNLSGEIPYE------------------------------------------------------------  231 (968)
T ss_pred             CCccEEECcCCccCCcCChh------------------------------------------------------------
Confidence            99999999988753 23332                                                            


Q ss_pred             ccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCcccccCcccccccccccccccccccccccc
Q 002432          465 LQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDR  544 (922)
Q Consensus       465 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  544 (922)
                      ...+++|+.|++.++......+..+  +.+++|++|+++++.....++     .....+++|+.|+++++.....++.. 
T Consensus       232 l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p-----~~l~~l~~L~~L~Ls~n~l~~~~p~~-  303 (968)
T PLN00113        232 IGGLTSLNHLDLVYNNLTGPIPSSL--GNLKNLQYLFLYQNKLSGPIP-----PSIFSLQKLISLDLSDNSLSGEIPEL-  303 (968)
T ss_pred             HhcCCCCCEEECcCceeccccChhH--hCCCCCCEEECcCCeeeccCc-----hhHhhccCcCEEECcCCeeccCCChh-
Confidence            1233566667776654433344333  578999999999885432221     12446788999999887643333322 


Q ss_pred             cccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccCCCCCCccCCcccccccccCcccEEecC
Q 002432          545 LSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLG  624 (922)
Q Consensus       545 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  624 (922)
                        ...+++|+.|++.+|. +....+ ..+..+++|+.|++++|.....++..               ...+++|+.|+++
T Consensus       304 --~~~l~~L~~L~l~~n~-~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~---------------l~~~~~L~~L~Ls  364 (968)
T PLN00113        304 --VIQLQNLEILHLFSNN-FTGKIP-VALTSLPRLQVLQLWSNKFSGEIPKN---------------LGKHNNLTVLDLS  364 (968)
T ss_pred             --HcCCCCCcEEECCCCc-cCCcCC-hhHhcCCCCCEEECcCCCCcCcCChH---------------HhCCCCCcEEECC
Confidence              4567899999998884 333322 35677899999999987644333321               2356888888888


Q ss_pred             CCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhc
Q 002432          625 NLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLE  704 (922)
Q Consensus       625 ~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~  704 (922)
                      ++.-...++             ..+..+++|+.|++++|++....+..+ ..+++|+.|++++|+--..+|  ..+..++
T Consensus       365 ~n~l~~~~p-------------~~~~~~~~L~~L~l~~n~l~~~~p~~~-~~~~~L~~L~L~~n~l~~~~p--~~~~~l~  428 (968)
T PLN00113        365 TNNLTGEIP-------------EGLCSSGNLFKLILFSNSLEGEIPKSL-GACRSLRRVRLQDNSFSGELP--SEFTKLP  428 (968)
T ss_pred             CCeeEeeCC-------------hhHhCcCCCCEEECcCCEecccCCHHH-hCCCCCCEEECcCCEeeeECC--hhHhcCC
Confidence            775333221             223456889999999997765433222 357899999999975433433  3478899


Q ss_pred             cccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCcccccccccc
Q 002432          705 QLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFS  784 (922)
Q Consensus       705 ~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~  784 (922)
                      +|+.|++++|. +.....       .....+++|+.|++++|.....++...   ..++|+.|++++|.-...+|..   
T Consensus       429 ~L~~L~Ls~N~-l~~~~~-------~~~~~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~~---  494 (968)
T PLN00113        429 LVYFLDISNNN-LQGRIN-------SRKWDMPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQFSGAVPRK---  494 (968)
T ss_pred             CCCEEECcCCc-ccCccC-------hhhccCCCCcEEECcCceeeeecCccc---ccccceEEECcCCccCCccChh---
Confidence            99999999874 332211       112247889999999988776666543   4688999999987544444432   


Q ss_pred             ccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeE
Q 002432          785 FHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENL  864 (922)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L  864 (922)
                                         +..+++|++|++++|.+....|..+.   .+++|++|+|++|.+.......+..+++|+.|
T Consensus       495 -------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  552 (968)
T PLN00113        495 -------------------LGSLSELMQLKLSENKLSGEIPDELS---SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL  552 (968)
T ss_pred             -------------------hhhhhccCEEECcCCcceeeCChHHc---CccCCCEEECCCCcccccCChhHhCcccCCEE
Confidence                               35688999999999999877776643   78899999999988876544556899999999


Q ss_pred             EEecccceEEecC-CccccccceEeccccccccccccC
Q 002432          865 NLSFCSYKELFSN-GGQVHLIKKLELICLNDLEYLWIP  901 (922)
Q Consensus       865 ~l~~c~l~~l~~~-~~~~~sL~~L~i~~c~~L~~l~~~  901 (922)
                      ++++|.+....|. ...+++|+.|++++|+-...+|..
T Consensus       553 ~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        553 DLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             ECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence            9999988754443 355889999999999887778754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.93  E-value=4.5e-28  Score=266.09  Aligned_cols=501  Identities=20%  Similarity=0.201  Sum_probs=338.6

Q ss_pred             EEeecCCCCCCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCC
Q 002432          212 ISWIDSSGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYST  290 (922)
Q Consensus       212 L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~  290 (922)
                      ++++.+....+|..+ ....+..|++..|...   ..|-++..+.-+|+.||+++|.+..+|..|..+.+|+.|+++.|.
T Consensus         3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l---~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~   79 (1081)
T KOG0618|consen    3 VDASDEQLELIPEQILNNEALQILNLRRNSLL---SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY   79 (1081)
T ss_pred             cccccccCcccchhhccHHHHHhhhccccccc---cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh
Confidence            455566666677655 3334778888877644   555555566667999999999999999999999999999999999


Q ss_pred             CCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccC
Q 002432          291 LGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEG  369 (922)
Q Consensus       291 l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~  369 (922)
                      |.. |.+.+++.+|++|+|.+|.++.+|.++..+++|++|+++.|. +..+|.- +..++.+..+..++| ..       
T Consensus        80 i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N-~~-------  149 (1081)
T KOG0618|consen   80 IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNN-EK-------  149 (1081)
T ss_pred             HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcc-hh-------
Confidence            988 899999999999999999999999999999999999999986 8888875 888999999888887 21       


Q ss_pred             CcccccccCcccCCCCCCCCEEEeeecCC-CCCCccccccccceeEEEEccCCCCCCccccccccccccccccccccccc
Q 002432          370 SSSKKSKASLDELMPLPRLTTLEIAVEND-NALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSL  448 (922)
Q Consensus       370 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l  448 (922)
                               +..++... ++.+++..+.. ..++..+  .                                      .+
T Consensus       150 ---------~~~lg~~~-ik~~~l~~n~l~~~~~~~i--~--------------------------------------~l  179 (1081)
T KOG0618|consen  150 ---------IQRLGQTS-IKKLDLRLNVLGGSFLIDI--Y--------------------------------------NL  179 (1081)
T ss_pred             ---------hhhhcccc-chhhhhhhhhcccchhcch--h--------------------------------------hh
Confidence                     12222222 55555554432 1111110  0                                      11


Q ss_pred             eeeEecccccchhhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCcccccCcccccccc
Q 002432          449 RMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLEL  528 (922)
Q Consensus       449 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~  528 (922)
                      +. .                     |++.+....     ......+++|+.+....+.....         ...-++|+.
T Consensus       180 ~~-~---------------------ldLr~N~~~-----~~dls~~~~l~~l~c~rn~ls~l---------~~~g~~l~~  223 (1081)
T KOG0618|consen  180 TH-Q---------------------LDLRYNEME-----VLDLSNLANLEVLHCERNQLSEL---------EISGPSLTA  223 (1081)
T ss_pred             he-e---------------------eecccchhh-----hhhhhhccchhhhhhhhcccceE---------EecCcchhe
Confidence            11 1                     222221111     11112344555555444422111         112356667


Q ss_pred             cccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccCCCCCCccCCcc
Q 002432          529 LSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNN  608 (922)
Q Consensus       529 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~  608 (922)
                      |+...++-.+..     ....-.+|+.++++.. ++..+|  .++..+++|+.+.+.... +..++..            
T Consensus       224 L~a~~n~l~~~~-----~~p~p~nl~~~dis~n-~l~~lp--~wi~~~~nle~l~~n~N~-l~~lp~r------------  282 (1081)
T KOG0618|consen  224 LYADHNPLTTLD-----VHPVPLNLQYLDISHN-NLSNLP--EWIGACANLEALNANHNR-LVALPLR------------  282 (1081)
T ss_pred             eeeccCcceeec-----cccccccceeeecchh-hhhcch--HHHHhcccceEecccchh-HHhhHHH------------
Confidence            777666643211     1222346778888765 566664  677778888888876643 4443321            


Q ss_pred             cccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCcccccCccEEEeccC
Q 002432          609 AIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGC  688 (922)
Q Consensus       609 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C  688 (922)
                                                              .....+|+.|.+..|+++.+++...  .+.+|++|++.. 
T Consensus       283 ----------------------------------------i~~~~~L~~l~~~~nel~yip~~le--~~~sL~tLdL~~-  319 (1081)
T KOG0618|consen  283 ----------------------------------------ISRITSLVSLSAAYNELEYIPPFLE--GLKSLRTLDLQS-  319 (1081)
T ss_pred             ----------------------------------------HhhhhhHHHHHhhhhhhhhCCCccc--ccceeeeeeehh-
Confidence                                                    1135677888888888887765543  368899999988 


Q ss_pred             cCccccccHHHHhhhcc-ccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcCCCCCccEE
Q 002432          689 QKLKFMFYASMIKSLEQ-LQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKL  767 (922)
Q Consensus       689 ~~L~~l~~~~~~~~l~~-L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L  767 (922)
                      ++|.++|. ..+.-+.. |+.|..+. ..+...+..+..       .++.|+.|.+.++.--....+.+.  +...|+.|
T Consensus       320 N~L~~lp~-~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~-------~~~~Lq~LylanN~Ltd~c~p~l~--~~~hLKVL  388 (1081)
T KOG0618|consen  320 NNLPSLPD-NFLAVLNASLNTLNVSS-NKLSTLPSYEEN-------NHAALQELYLANNHLTDSCFPVLV--NFKHLKVL  388 (1081)
T ss_pred             ccccccch-HHHhhhhHHHHHHhhhh-ccccccccccch-------hhHHHHHHHHhcCcccccchhhhc--cccceeee
Confidence            68888765 33444433 77777764 466666532222       367899999988644444434444  78899999


Q ss_pred             EEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCC
Q 002432          768 EVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDS  847 (922)
Q Consensus       768 ~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l  847 (922)
                      ++++ +.|.++|..                     ...+++.|++|++|+|++..+. +.   ...+..|++|...+|.+
T Consensus       389 hLsy-NrL~~fpas---------------------~~~kle~LeeL~LSGNkL~~Lp-~t---va~~~~L~tL~ahsN~l  442 (1081)
T KOG0618|consen  389 HLSY-NRLNSFPAS---------------------KLRKLEELEELNLSGNKLTTLP-DT---VANLGRLHTLRAHSNQL  442 (1081)
T ss_pred             eecc-cccccCCHH---------------------HHhchHHhHHHhcccchhhhhh-HH---HHhhhhhHHHhhcCCce
Confidence            9998 689999864                     3477899999999999998875 33   34678999999999999


Q ss_pred             cccchhHHhhcCCCCeEEEecccceEEecCCccc-cccceEeccccccccccccCCCCCCCcccccccEEEee
Q 002432          848 ASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQV-HLIKKLELICLNDLEYLWIPNSKMGDSILQNLEILKTV  919 (922)
Q Consensus       848 ~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~-~sL~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~~l~l~  919 (922)
                      ..+| ++ ..++.|+.+|++.|.+..+.-....+ ++|+.|+++|++++ .++.+    .+..++.+...++.
T Consensus       443 ~~fP-e~-~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l-~~d~~----~l~~l~~l~~~~i~  508 (1081)
T KOG0618|consen  443 LSFP-EL-AQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL-VFDHK----TLKVLKSLSQMDIT  508 (1081)
T ss_pred             eech-hh-hhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc-ccchh----hhHHhhhhhheecc
Confidence            9999 44 47999999999999887765555556 89999999998873 34444    34456666666553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.92  E-value=3.3e-29  Score=249.44  Aligned_cols=176  Identities=27%  Similarity=0.330  Sum_probs=134.8

Q ss_pred             cceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEc
Q 002432          208 KCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCL  286 (922)
Q Consensus       208 ~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L  286 (922)
                      .+..+.+++|.+..+.+.. .+..+.+|.+.+|...   ++|.++ +.+..++.|+.++|++.++|+.++.+..|+.|+.
T Consensus        46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~---~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS---QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDC  121 (565)
T ss_pred             chhhhhhccCchhhccHhhhcccceeEEEeccchhh---hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence            3455677777776665544 7777888888887766   677777 7788888888888888888888888888888888


Q ss_pred             cCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccc
Q 002432          287 DYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKV  365 (922)
Q Consensus       287 ~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~  365 (922)
                      ++|.+.+ |++|+.+..|..|+..+|+++.+|.++.++.+|..|++.+|. ++..|+.. -+++.|++|+...|-+.   
T Consensus       122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~-i~m~~L~~ld~~~N~L~---  196 (565)
T KOG0472|consen  122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENH-IAMKRLKHLDCNSNLLE---  196 (565)
T ss_pred             cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHH-HHHHHHHhcccchhhhh---
Confidence            8888777 788888888888888888888888888888888888888875 77777773 34888888887666554   


Q ss_pred             cccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCc
Q 002432          366 EDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE  403 (922)
Q Consensus       366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  403 (922)
                                 ..+.+++.+.+|..|++..|.+..+|+
T Consensus       197 -----------tlP~~lg~l~~L~~LyL~~Nki~~lPe  223 (565)
T KOG0472|consen  197 -----------TLPPELGGLESLELLYLRRNKIRFLPE  223 (565)
T ss_pred             -----------cCChhhcchhhhHHHHhhhcccccCCC
Confidence                       567778888888888888777766663

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.92  E-value=1e-25  Score=234.66  Aligned_cols=205  Identities=17%  Similarity=0.221  Sum_probs=135.2

Q ss_pred             CCCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCC
Q 002432          652 LPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPP  731 (922)
Q Consensus       652 l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~  731 (922)
                      +++|+.|.+..|++..+..+.+. .+.++++|++.. +++..+ ..+++-+|++|+.|++++ +.+..+-...|.     
T Consensus       244 L~Sl~nlklqrN~I~kL~DG~Fy-~l~kme~l~L~~-N~l~~v-n~g~lfgLt~L~~L~lS~-NaI~rih~d~Ws-----  314 (873)
T KOG4194|consen  244 LPSLQNLKLQRNDISKLDDGAFY-GLEKMEHLNLET-NRLQAV-NEGWLFGLTSLEQLDLSY-NAIQRIHIDSWS-----  314 (873)
T ss_pred             chhhhhhhhhhcCcccccCccee-eecccceeeccc-chhhhh-hcccccccchhhhhccch-hhhheeecchhh-----
Confidence            33444444444444433332222 345566666665 455544 334556666666666666 355555333222     


Q ss_pred             cccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcc
Q 002432          732 CFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLE  811 (922)
Q Consensus       732 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  811 (922)
                        ..++|++|+++++ .++.++++.+ ..+..|++|.+++ +.+..+.++                     .+..+.+|+
T Consensus       315 --ftqkL~~LdLs~N-~i~~l~~~sf-~~L~~Le~LnLs~-Nsi~~l~e~---------------------af~~lssL~  368 (873)
T KOG4194|consen  315 --FTQKLKELDLSSN-RITRLDEGSF-RVLSQLEELNLSH-NSIDHLAEG---------------------AFVGLSSLH  368 (873)
T ss_pred             --hcccceeEecccc-ccccCChhHH-HHHHHhhhhcccc-cchHHHHhh---------------------HHHHhhhhh
Confidence              2466666666663 4555544322 2577888888887 467776554                     346688999


Q ss_pred             eEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCccccccceEeccc
Q 002432          812 ELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELIC  891 (922)
Q Consensus       812 ~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~~sL~~L~i~~  891 (922)
                      +|++++|.+.-...+.-....++++|+.|.+.+|++.++|...+.++.+||.|++.+|.+.++.+....+..|++|-+..
T Consensus       369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nS  448 (873)
T KOG4194|consen  369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNS  448 (873)
T ss_pred             hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcc
Confidence            99999998775433321124578899999999999999999999999999999999999999988887777899987753

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.90  E-value=1e-24  Score=227.31  Aligned_cols=153  Identities=16%  Similarity=0.211  Sum_probs=89.2

Q ss_pred             ccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCC---ccccC
Q 002432          677 FQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPE---LTCLY  753 (922)
Q Consensus       677 l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~---l~~l~  753 (922)
                      +++|+.|++++ ++++.+++ +.+..|..|++|.++++ .+..+..       ..+..+.+|++|+++++.-   +++-.
T Consensus       316 tqkL~~LdLs~-N~i~~l~~-~sf~~L~~Le~LnLs~N-si~~l~e-------~af~~lssL~~LdLr~N~ls~~IEDaa  385 (873)
T KOG4194|consen  316 TQKLKELDLSS-NRITRLDE-GSFRVLSQLEELNLSHN-SIDHLAE-------GAFVGLSSLHKLDLRSNELSWCIEDAA  385 (873)
T ss_pred             cccceeEeccc-cccccCCh-hHHHHHHHhhhhccccc-chHHHHh-------hHHHHhhhhhhhcCcCCeEEEEEecch
Confidence            35555555555 45555433 33555555555555552 3333311       0122345555555554321   22222


Q ss_pred             CCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCC
Q 002432          754 PGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHL  833 (922)
Q Consensus       754 ~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  833 (922)
                      ..+  .++++|++|++.| +++++++.-                     .+.++++||.|++.+|.+..+-+..|.   .
T Consensus       386 ~~f--~gl~~LrkL~l~g-Nqlk~I~kr---------------------Afsgl~~LE~LdL~~NaiaSIq~nAFe---~  438 (873)
T KOG4194|consen  386 VAF--NGLPSLRKLRLTG-NQLKSIPKR---------------------AFSGLEALEHLDLGDNAIASIQPNAFE---P  438 (873)
T ss_pred             hhh--ccchhhhheeecC-ceeeecchh---------------------hhccCcccceecCCCCcceeecccccc---c
Confidence            222  3789999999988 689988764                     357789999999999999988888766   3


Q ss_pred             CCCccEEEeec------CCCcccchhHHhhcCCCCeEEEecc
Q 002432          834 FGSLKDLEVRD------DDSASVPIGLLEKFHGLENLNLSFC  869 (922)
Q Consensus       834 ~~sL~~L~l~~------~~l~~lp~~~l~~l~~L~~L~l~~c  869 (922)
                      + .|++|.+..      +.+.=++.++..  ..++.-.+..|
T Consensus       439 m-~Lk~Lv~nSssflCDCql~Wl~qWl~~--~~lq~sv~a~C  477 (873)
T KOG4194|consen  439 M-ELKELVMNSSSFLCDCQLKWLAQWLYR--RKLQSSVIAKC  477 (873)
T ss_pred             c-hhhhhhhcccceEEeccHHHHHHHHHh--cccccceeeec
Confidence            3 777777655      444445555543  23334444444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.90  E-value=1.4e-27  Score=237.84  Aligned_cols=455  Identities=19%  Similarity=0.249  Sum_probs=270.0

Q ss_pred             CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCE
Q 002432          227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEI  305 (922)
Q Consensus       227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~  305 (922)
                      .-..+..+++++|...   .+.+++ .++..|.+|++.+|+..++|.+++.+..+..++.++|++.. |+.++.+.+|+.
T Consensus        43 ~qv~l~~lils~N~l~---~l~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~  118 (565)
T KOG0472|consen   43 EQVDLQKLILSHNDLE---VLREDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVK  118 (565)
T ss_pred             hhcchhhhhhccCchh---hccHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhh
Confidence            3456677777777654   444454 77788888888888888888888888888888888888777 788888888888


Q ss_pred             EEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCC
Q 002432          306 LSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPL  385 (922)
Q Consensus       306 L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  385 (922)
                      |+.++|.+.++|++|+.+..|..|+..+|+ +..+|++ ++++.+|..|++.+|++.              +.++..-++
T Consensus       119 l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~-~~~~~~l~~l~~~~n~l~--------------~l~~~~i~m  182 (565)
T KOG0472|consen  119 LDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPED-MVNLSKLSKLDLEGNKLK--------------ALPENHIAM  182 (565)
T ss_pred             hhccccceeecCchHHHHhhhhhhhccccc-cccCchH-HHHHHHHHHhhccccchh--------------hCCHHHHHH
Confidence            888888888888888888888888877765 7777776 777888888888777766              444555557


Q ss_pred             CCCCEEEeeecCCCCCCccccccccceeEEEEccCCCCCCccccccccccccccccccccccceeeEecccccchhhhcc
Q 002432          386 PRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKL  465 (922)
Q Consensus       386 ~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~  465 (922)
                      +.|++|+...|-.+.+|..+                                                            
T Consensus       183 ~~L~~ld~~~N~L~tlP~~l------------------------------------------------------------  202 (565)
T KOG0472|consen  183 KRLKHLDCNSNLLETLPPEL------------------------------------------------------------  202 (565)
T ss_pred             HHHHhcccchhhhhcCChhh------------------------------------------------------------
Confidence            77777777666666555542                                                            


Q ss_pred             cCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCcccccCccccccccccccccccccccccccc
Q 002432          466 QGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRL  545 (922)
Q Consensus       466 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  545 (922)
                                                +++.+|..|++.++. +.+      .+..+++..|++|++.. ..++.++.+  
T Consensus       203 --------------------------g~l~~L~~LyL~~Nk-i~~------lPef~gcs~L~Elh~g~-N~i~~lpae--  246 (565)
T KOG0472|consen  203 --------------------------GGLESLELLYLRRNK-IRF------LPEFPGCSLLKELHVGE-NQIEMLPAE--  246 (565)
T ss_pred             --------------------------cchhhhHHHHhhhcc-ccc------CCCCCccHHHHHHHhcc-cHHHhhHHH--
Confidence                                      122222222222221 111      11122233333333332 112222222  


Q ss_pred             ccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccCCCCCCccCCcccccccccCcccEEecCC
Q 002432          546 STESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGN  625 (922)
Q Consensus       546 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  625 (922)
                      ....++++..|++.++ +++.+|.  .+..+.+|++|++++.. ++.++                               
T Consensus       247 ~~~~L~~l~vLDLRdN-klke~Pd--e~clLrsL~rLDlSNN~-is~Lp-------------------------------  291 (565)
T KOG0472|consen  247 HLKHLNSLLVLDLRDN-KLKEVPD--EICLLRSLERLDLSNND-ISSLP-------------------------------  291 (565)
T ss_pred             Hhcccccceeeecccc-ccccCch--HHHHhhhhhhhcccCCc-cccCC-------------------------------
Confidence            1224566677777665 6666643  33456677777776632 33332                               


Q ss_pred             CCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccC----C-----------------------------
Q 002432          626 LPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHN----Q-----------------------------  672 (922)
Q Consensus       626 c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~----~-----------------------------  672 (922)
                                           ..++++ .|+.|.+.||-+..+-.+    .                             
T Consensus       292 ---------------------~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t  349 (565)
T KOG0472|consen  292 ---------------------YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT  349 (565)
T ss_pred             ---------------------cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence                                 222334 555666666622211000    0                             


Q ss_pred             -----Cc--ccccCccEEEeccCcCccccccHHHHhhhc--cccEEEEecccccceEecccCCCCCCCcccccccceeec
Q 002432          673 -----TP--CCFQRLTRLIVWGCQKLKFMFYASMIKSLE--QLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISL  743 (922)
Q Consensus       673 -----~~--~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~--~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l  743 (922)
                           ++  ....+.+.|++++ .+++.+|. +.|..-.  -....+++.+ .+.+++.        ....+..+.+.-+
T Consensus       350 ~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPd-EVfea~~~~~Vt~VnfskN-qL~elPk--------~L~~lkelvT~l~  418 (565)
T KOG0472|consen  350 LPSESFPDIYAIITTKILDVSD-KQLTLVPD-EVFEAAKSEIVTSVNFSKN-QLCELPK--------RLVELKELVTDLV  418 (565)
T ss_pred             CCCCcccchhhhhhhhhhcccc-cccccCCH-HHHHHhhhcceEEEecccc-hHhhhhh--------hhHHHHHHHHHHH
Confidence                 00  0122344444444 34444432 2222221  1233333331 3333311        0001122222222


Q ss_pred             ccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhh
Q 002432          744 CHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMML  823 (922)
Q Consensus       744 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  823 (922)
                      .....+...+...  ..+++|..|++++ +-+.++|.+.                      +.+-.|+.|+|+.|++...
T Consensus       419 lsnn~isfv~~~l--~~l~kLt~L~L~N-N~Ln~LP~e~----------------------~~lv~Lq~LnlS~NrFr~l  473 (565)
T KOG0472|consen  419 LSNNKISFVPLEL--SQLQKLTFLDLSN-NLLNDLPEEM----------------------GSLVRLQTLNLSFNRFRML  473 (565)
T ss_pred             hhcCccccchHHH--Hhhhcceeeeccc-chhhhcchhh----------------------hhhhhhheecccccccccc
Confidence            3333333333222  3788888888886 4688888764                      5677799999999876543


Q ss_pred             cCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCccccccceEecccccc
Q 002432          824 LQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLND  894 (922)
Q Consensus       824 ~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~~sL~~L~i~~c~~  894 (922)
                      + ..   ...+..|+.+-.++|.+.++|.+.++++.+|..|++.+|.++++||..|.+++|+.|+++|+|-
T Consensus       474 P-~~---~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  474 P-EC---LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             h-HH---HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence            2 22   2234566777777799999988877889999999999999999999889999999999988765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.90  E-value=5.7e-26  Score=249.72  Aligned_cols=112  Identities=19%  Similarity=0.228  Sum_probs=83.5

Q ss_pred             ceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCcc
Q 002432          801 FSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQ  880 (922)
Q Consensus       801 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~  880 (922)
                      +..+.+++.|+.|++++|++..+....   +..+..|++|++++|.++.+|..+ ..+..|++|...+|.+...| ....
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~~fpas~---~~kle~LeeL~LSGNkL~~Lp~tv-a~~~~L~tL~ahsN~l~~fP-e~~~  450 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLNSFPASK---LRKLEELEELNLSGNKLTTLPDTV-ANLGRLHTLRAHSNQLLSFP-ELAQ  450 (1081)
T ss_pred             hhhhccccceeeeeecccccccCCHHH---HhchHHhHHHhcccchhhhhhHHH-HhhhhhHHHhhcCCceeech-hhhh
Confidence            445567788888888888776655444   336778888888888888888766 47888888888888777765 5566


Q ss_pred             ccccceEeccccccccccccCCCCCCCcccccccEEEeeecC
Q 002432          881 VHLIKKLELICLNDLEYLWIPNSKMGDSILQNLEILKTVARS  922 (922)
Q Consensus       881 ~~sL~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~~l~l~~~~  922 (922)
                      ++.|+.+|+ +|++|+.+....   .+++ ++|++||+++|.
T Consensus       451 l~qL~~lDl-S~N~L~~~~l~~---~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  451 LPQLKVLDL-SCNNLSEVTLPE---ALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             cCcceEEec-ccchhhhhhhhh---hCCC-cccceeeccCCc
Confidence            899999999 888887655321   1233 899999999884

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=6.8e-25  Score=229.83  Aligned_cols=113  Identities=19%  Similarity=0.306  Sum_probs=55.7

Q ss_pred             CChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCc--ccchhhcCC
Q 002432          247 IPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIV--EFPEELGKL  323 (922)
Q Consensus       247 l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~--~lp~~i~~L  323 (922)
                      +|.+. ..+..++.|.|..+++..+|+.++.|.+|+.|.+.+|++.. -..++.|+.||.++++.|+++  .+|..|-+|
T Consensus        24 FP~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l  102 (1255)
T KOG0444|consen   24 FPHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRL  102 (1255)
T ss_pred             CchhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhccc
Confidence            34443 44555555555555555555555555555555555555444 344444555555555555433  445555555


Q ss_pred             CCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432          324 TKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       324 ~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      ..|.+||+++|+ +..+|.+ +...+++-+|+|++|++.
T Consensus       103 ~dLt~lDLShNq-L~EvP~~-LE~AKn~iVLNLS~N~Ie  139 (1255)
T KOG0444|consen  103 KDLTILDLSHNQ-LREVPTN-LEYAKNSIVLNLSYNNIE  139 (1255)
T ss_pred             ccceeeecchhh-hhhcchh-hhhhcCcEEEEcccCccc
Confidence            555555555543 4555544 444455555555554444

>PLN03210 Resistant to P

Probab=99.88  E-value=1.6e-21  Score=242.12  Aligned_cols=345  Identities=18%  Similarity=0.237  Sum_probs=251.4

Q ss_pred             ccCcceEEEeecCCC-------CCCCCCC-CC-CCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhh
Q 002432          205 ALKKCYAISWIDSSG-------GELPEGL-EC-PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI  275 (922)
Q Consensus       205 ~~~~l~~L~l~~~~~-------~~l~~~~-~~-~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i  275 (922)
                      ..++++.|.+..+..       ..+|..+ .+ .+||.|.+.++...   .+|..+  .+.+|+.|+++++.+..+|..+
T Consensus       556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~---~lP~~f--~~~~L~~L~L~~s~l~~L~~~~  630 (1153)
T PLN03210        556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR---CMPSNF--RPENLVKLQMQGSKLEKLWDGV  630 (1153)
T ss_pred             cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC---CCCCcC--CccCCcEEECcCcccccccccc
Confidence            356778888865532       1344444 33 47999999998765   788765  5789999999999999999999


Q ss_pred             hccCCCCEEEccCCC-CCCccccCCCCcCCEEEeecC-CCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCE
Q 002432          276 DLLVNLQTLCLDYST-LGDITIIGKLKNLEILSLIES-DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEE  353 (922)
Q Consensus       276 ~~L~~L~~L~L~~~~-l~~p~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~  353 (922)
                      ..+++|++|+|+++. +..++.++.+++|++|++++| .+..+|..++++++|++|++++|..++.+|.. + ++++|+.
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~  708 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYR  708 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCE
Confidence            999999999999987 555567899999999999998 67799999999999999999999889999986 4 8999999


Q ss_pred             EEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccccccccceeEEEEccCCCCCCcccccccc
Q 002432          354 LYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWF  433 (922)
Q Consensus       354 L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~  433 (922)
                      |++++|....             ..+.   ..++|+.|+++++....+|..+.+++|..|.+.....             
T Consensus       709 L~Lsgc~~L~-------------~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~-------------  759 (1153)
T PLN03210        709 LNLSGCSRLK-------------SFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKS-------------  759 (1153)
T ss_pred             EeCCCCCCcc-------------cccc---ccCCcCeeecCCCccccccccccccccccccccccch-------------
Confidence            9999986542             1111   2458899999999988888876666666655321100             


Q ss_pred             ccccccccccccccceeeEecccccchhhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeec
Q 002432          434 RISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVD  513 (922)
Q Consensus       434 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~  513 (922)
                                       ..+......+........++|+.|++.++.....++..+  +.+++|+.|++++|..++.++.
T Consensus       760 -----------------~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~  820 (1153)
T PLN03210        760 -----------------EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPT  820 (1153)
T ss_pred             -----------------hhccccccccchhhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCC
Confidence                             000000000000001123678888888877666665554  5788888888888888777653


Q ss_pred             CcccccCcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhh
Q 002432          514 SREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEI  593 (922)
Q Consensus       514 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  593 (922)
                      .      ..+++|+.|++++|..+..++.      ..++|+.|++.++ .++.+|  ..+..+++|+.|++++|++++.+
T Consensus       821 ~------~~L~sL~~L~Ls~c~~L~~~p~------~~~nL~~L~Ls~n-~i~~iP--~si~~l~~L~~L~L~~C~~L~~l  885 (1153)
T PLN03210        821 G------INLESLESLDLSGCSRLRTFPD------ISTNISDLNLSRT-GIEEVP--WWIEKFSNLSFLDMNGCNNLQRV  885 (1153)
T ss_pred             C------CCccccCEEECCCCCccccccc------cccccCEeECCCC-CCccCh--HHHhcCCCCCEEECCCCCCcCcc
Confidence            2      2577888888888887766532      2357888888776 566553  24677888888888888888877


Q ss_pred             hccCCCCCCccCCcccccccccCcccEEecCCCCCcccccc
Q 002432          594 FAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCC  634 (922)
Q Consensus       594 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~  634 (922)
                      +...               ..+++|+.+.+.+|++|..++.
T Consensus       886 ~~~~---------------~~L~~L~~L~l~~C~~L~~~~l  911 (1153)
T PLN03210        886 SLNI---------------SKLKHLETVDFSDCGALTEASW  911 (1153)
T ss_pred             Cccc---------------ccccCCCeeecCCCcccccccC
Confidence            6432               3577888888888888876543

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.86  E-value=3.5e-24  Score=224.51  Aligned_cols=177  Identities=21%  Similarity=0.291  Sum_probs=140.8

Q ss_pred             ccCcceEEEeecCCC--CCCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCC
Q 002432          205 ALKKCYAISWIDSSG--GELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNL  281 (922)
Q Consensus       205 ~~~~l~~L~l~~~~~--~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L  281 (922)
                      .++-+|-+++++|.+  ..+|... .++.++-|.+......   .+|+++ +.+.+|..|++++|++.++...++.|+.|
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~---~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~L   80 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE---QVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRL   80 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh---hChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhh
Confidence            456677788888877  4567666 7788888888776654   688876 88888888888888888877778888888


Q ss_pred             CEEEccCCCCCC---ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccC
Q 002432          282 QTLCLDYSTLGD---ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN  358 (922)
Q Consensus       282 ~~L~L~~~~l~~---p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~  358 (922)
                      |.++++.|++..   |..|-+|..|.+|||++|++++.|..+..-+++-+|++++|+ +..+|...+.+|+.|-.|+|++
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcccc
Confidence            888888888754   788888888888888888888888888888888888888875 8888888778888888888888


Q ss_pred             CcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCC
Q 002432          359 CFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNA  400 (922)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  400 (922)
                      |.+.              ..+..+..+.+|++|.+++|....
T Consensus       160 NrLe--------------~LPPQ~RRL~~LqtL~Ls~NPL~h  187 (1255)
T KOG0444|consen  160 NRLE--------------MLPPQIRRLSMLQTLKLSNNPLNH  187 (1255)
T ss_pred             chhh--------------hcCHHHHHHhhhhhhhcCCChhhH
Confidence            8776              566777888888888888776543

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.76  E-value=2.9e-19  Score=189.77  Aligned_cols=134  Identities=30%  Similarity=0.505  Sum_probs=104.5

Q ss_pred             cceEeCCCCCHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHHHHHHHhcCCCCC
Q 002432            4 EANFSIEILNEEEAWRLFEVKLGND--DLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTEN   81 (922)
Q Consensus         4 ~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~~~l~~~~~~~~~   81 (922)
                      ..+|++++|+++||++||++.|+..  ..++.+++++++|+++|+|+||||+++|++|+.+.+.++|+++++++......
T Consensus       149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~  228 (287)
T PF00931_consen  149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE  228 (287)
T ss_dssp             EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4689999999999999999999432  34566788999999999999999999999997766788899999887611111


Q ss_pred             CCccchHHHHHHHHHHHhcCCchhHHHHHhhcccc-CCCchhH-HHHHHHHhcCCccccc
Q 002432           82 NFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLM-PKSFFAS-DLFKYCIGLGIFRGID  139 (922)
Q Consensus        82 ~~~~~~~~~~~~l~lsY~~L~~~~lk~cfly~~~f-~~~~~~~-~Li~~WiaeG~i~~~~  139 (922)
                       .......+..++.+||+.||++ +|.||+|||+| +++.|++ .|+++|+|||||+.++
T Consensus       229 -~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~  286 (287)
T PF00931_consen  229 -SRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH  286 (287)
T ss_dssp             -SSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred             -cccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence             0012345999999999999998 89999999999 7899998 9999999999998753

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=1.2e-18  Score=154.11  Aligned_cols=163  Identities=26%  Similarity=0.372  Sum_probs=86.1

Q ss_pred             CCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCC
Q 002432          222 LPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKL  300 (922)
Q Consensus       222 l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L  300 (922)
                      ++..+.++++..|.+++|...   .+|+.+ ..+++|++|++++|+|+++|.+++.++.||.|++.-|++.. |..|+.+
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~---~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~  101 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLT---VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF  101 (264)
T ss_pred             cccccchhhhhhhhcccCcee---ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence            333344444455555555443   344444 55555555555555555555555555555555555555544 5555555


Q ss_pred             CcCCEEEeecCCCc--ccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccC
Q 002432          301 KNLEILSLIESDIV--EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKAS  378 (922)
Q Consensus       301 ~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~  378 (922)
                      +-|+.||+.+|++.  .+|..|-.++.|+.|+++.|. ++.+|++ ++++++||.|.+.+|.+.              ..
T Consensus       102 p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll--------------~l  165 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL--------------SL  165 (264)
T ss_pred             chhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh--------------hC
Confidence            55555555555444  445555555555555555543 5555554 555555555555555444              34


Q ss_pred             cccCCCCCCCCEEEeeecCCCCCCcc
Q 002432          379 LDELMPLPRLTTLEIAVENDNALPEG  404 (922)
Q Consensus       379 ~~~l~~l~~L~~L~l~~~~~~~~~~~  404 (922)
                      +.+++.++.|++|.+.+|....+|..
T Consensus       166 pkeig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  166 PKEIGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             cHHHHHHHHHHHHhcccceeeecChh
Confidence            45555555555555555555555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=2.3e-18  Score=152.25  Aligned_cols=158  Identities=24%  Similarity=0.356  Sum_probs=145.9

Q ss_pred             CCCCccccCcceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhc
Q 002432          199 EWPDEDALKKCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDL  277 (922)
Q Consensus       199 ~~~~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~  277 (922)
                      +++..-..+.+++|.+++|.+..+|+.+ ++.+|++|+++.|.+.   ++|.++ +.+++||.|++.-|.+..+|..||.
T Consensus        25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie---~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs  100 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE---ELPTSI-SSLPKLRILNVGMNRLNILPRGFGS  100 (264)
T ss_pred             hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh---hcChhh-hhchhhhheecchhhhhcCccccCC
Confidence            3344445678999999999999999988 9999999999999887   899888 9999999999999999999999999


Q ss_pred             cCCCCEEEccCCCCCC---ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEE
Q 002432          278 LVNLQTLCLDYSTLGD---ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEEL  354 (922)
Q Consensus       278 L~~L~~L~L~~~~l~~---p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L  354 (922)
                      ++-|++|||.+|.+.+   |..|-.++.|+-|+++.|.+.-+|..+++|++||.|.+..|. +-.+|.+ ++.++.|++|
T Consensus       101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrel  178 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLREL  178 (264)
T ss_pred             CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHH
Confidence            9999999999999875   889999999999999999999999999999999999999986 8889998 9999999999


Q ss_pred             EccCCccc
Q 002432          355 YMSNCFVE  362 (922)
Q Consensus       355 ~L~~~~~~  362 (922)
                      ++.+|.+.
T Consensus       179 hiqgnrl~  186 (264)
T KOG0617|consen  179 HIQGNRLT  186 (264)
T ss_pred             hcccceee
Confidence            99999887

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.60  E-value=1.4e-17  Score=166.86  Aligned_cols=135  Identities=21%  Similarity=0.284  Sum_probs=106.6

Q ss_pred             CCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeec-CCCcccchh-h
Q 002432          246 NIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIE-SDIVEFPEE-L  320 (922)
Q Consensus       246 ~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~-~~l~~lp~~-i  320 (922)
                      .+|.++   ...-..++|..|+|+.+|+ +|+.+++||.|||++|.|+.  |..|..|..|-.|-+.+ |+|+.+|.+ |
T Consensus        60 eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F  136 (498)
T KOG4237|consen   60 EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF  136 (498)
T ss_pred             cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence            556544   3445678899999999975 78999999999999999887  78999999988887777 799999876 7


Q ss_pred             cCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecC
Q 002432          321 GKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEN  397 (922)
Q Consensus       321 ~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  397 (922)
                      ++|..||.|.+.-|. +..++.+.+..|++|..|.+.+|.+..             ..-..+..+..++.+.+..|.
T Consensus       137 ~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~-------------i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  137 GGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQS-------------ICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhh-------------hccccccchhccchHhhhcCc
Confidence            999999999888875 888888888999999999998887762             112356667777777766554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.51  E-value=1.8e-15  Score=152.00  Aligned_cols=142  Identities=23%  Similarity=0.259  Sum_probs=96.5

Q ss_pred             EEecCCCCCCCCCccccCcceEEEeecCCCCCCCCCC--CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeC-C
Q 002432          190 FLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGL--ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTN-M  266 (922)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~-~  266 (922)
                      +...+.++.++|. +.+.....+.+..|.+..+|+..  .+++||.|++++|.++   .|.++.|.+++.|-.|-+.+ |
T Consensus        51 VdCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is---~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   51 VDCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS---FIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             EEccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchh---hcChHhhhhhHhhhHHHhhcCC
Confidence            3344456666654 56677777778777777777654  6777777777777766   56666667777766655544 6


Q ss_pred             cCccCch-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCC
Q 002432          267 QLFSLPS-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCF  335 (922)
Q Consensus       267 ~i~~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~  335 (922)
                      +|+.+|. .|++|..|+-|.+.-|++.-  .+.|..|++|..|.+..|.+..++. .+..+..++++.+..|.
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            7777765 56777777777777777654  4667777777777777777776666 46777777777666554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.50  E-value=8.2e-14  Score=160.31  Aligned_cols=253  Identities=19%  Similarity=0.115  Sum_probs=155.5

Q ss_pred             cccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccCCCCCCccCC
Q 002432          527 ELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDN  606 (922)
Q Consensus       527 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  606 (922)
                      ..|+++++ .++.+|..     -.++|+.|.+.++ +++.+|.     ..++|++|+++++ +++.++.           
T Consensus       204 ~~LdLs~~-~LtsLP~~-----l~~~L~~L~L~~N-~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~-----------  259 (788)
T PRK15387        204 AVLNVGES-GLTTLPDC-----LPAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPV-----------  259 (788)
T ss_pred             cEEEcCCC-CCCcCCcc-----hhcCCCEEEccCC-cCCCCCC-----CCCCCcEEEecCC-ccCcccC-----------
Confidence            34555554 44545432     1246888888775 5666642     2578888888775 5665542           


Q ss_pred             cccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCcccccCccEEEec
Q 002432          607 NNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVW  686 (922)
Q Consensus       607 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~  686 (922)
                             .+++|+.|.+.++. +..++.                .+++|+.|++++|+++.++.     .+++|++|+++
T Consensus       260 -------lp~sL~~L~Ls~N~-L~~Lp~----------------lp~~L~~L~Ls~N~Lt~LP~-----~p~~L~~LdLS  310 (788)
T PRK15387        260 -------LPPGLLELSIFSNP-LTHLPA----------------LPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVS  310 (788)
T ss_pred             -------cccccceeeccCCc-hhhhhh----------------chhhcCEEECcCCccccccc-----cccccceeECC
Confidence                   24667777776653 444331                13567777777777776643     23667777777


Q ss_pred             cCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcCCCCCccE
Q 002432          687 GCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKK  766 (922)
Q Consensus       687 ~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~  766 (922)
                      ++ +++.+|.     ...+|+.|++++| .++.++.           ..++|+.|+++++ +++.+|.     ..++|+.
T Consensus       311 ~N-~L~~Lp~-----lp~~L~~L~Ls~N-~L~~LP~-----------lp~~Lq~LdLS~N-~Ls~LP~-----lp~~L~~  366 (788)
T PRK15387        311 DN-QLASLPA-----LPSELCKLWAYNN-QLTSLPT-----------LPSGLQELSVSDN-QLASLPT-----LPSELYK  366 (788)
T ss_pred             CC-ccccCCC-----CcccccccccccC-ccccccc-----------cccccceEecCCC-ccCCCCC-----CCcccce
Confidence            73 6666542     1245667777664 4444421           0135777777763 4555553     2346667


Q ss_pred             EEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCC
Q 002432          767 LEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDD  846 (922)
Q Consensus       767 L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~  846 (922)
                      |++++ +++..+|..                         .++|+.|++++|++..+..       .+++|+.|++++|.
T Consensus       367 L~Ls~-N~L~~LP~l-------------------------~~~L~~LdLs~N~Lt~LP~-------l~s~L~~LdLS~N~  413 (788)
T PRK15387        367 LWAYN-NRLTSLPAL-------------------------PSGLKELIVSGNRLTSLPV-------LPSELKELMVSGNR  413 (788)
T ss_pred             ehhhc-cccccCccc-------------------------ccccceEEecCCcccCCCC-------cccCCCEEEccCCc
Confidence            77665 356555431                         3568888888887764321       23578888888888


Q ss_pred             CcccchhHHhhcCCCCeEEEecccceEEecCCccccccceEeccccc
Q 002432          847 SASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLN  893 (922)
Q Consensus       847 l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~~sL~~L~i~~c~  893 (922)
                      +.++|..    ..+|+.|++++|.+..+|...+.+++|+.|++++++
T Consensus       414 LssIP~l----~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        414 LTSLPML----PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             CCCCCcc----hhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence            8888742    356778888888888776655667788888886664

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.43  E-value=5.4e-13  Score=154.81  Aligned_cols=138  Identities=17%  Similarity=0.281  Sum_probs=72.0

Q ss_pred             cceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEcc
Q 002432          208 KCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLD  287 (922)
Q Consensus       208 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~  287 (922)
                      +...|.+.++.+..+|..+ .++|+.|++++|.+.   .+|..++   .+|++|++++|.++.+|..+.  .+|+.|+++
T Consensus       179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt---sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELK---SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC---cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence            3455666655555555432 134566666665544   4555442   355666666666655555443  245666666


Q ss_pred             CCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432          288 YSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       288 ~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      +|.+.. |..+.  .+|++|++++|+++.+|..+.  .+|++|++++|. ++.+|.. +.  ++|+.|++++|.+.
T Consensus       250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        250 INRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLT  317 (754)
T ss_pred             CCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCccc
Confidence            665555 44332  355666666555555555443  355666665553 5555543 22  34555555555444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.41  E-value=6.3e-12  Score=144.92  Aligned_cols=156  Identities=19%  Similarity=0.216  Sum_probs=109.8

Q ss_pred             ceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccC
Q 002432          209 CYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDY  288 (922)
Q Consensus       209 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~  288 (922)
                      -..|+++.+.+..+|..+. ++|+.|++.+|...   .+|.    .+++|++|++++|+++.+|..   .++|+.|++++
T Consensus       203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt---~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT---SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC---CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence            4567788888877777552 47888888888765   5663    357888888888888888753   35788888888


Q ss_pred             CCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccc
Q 002432          289 STLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVED  367 (922)
Q Consensus       289 ~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~  367 (922)
                      |.+.. |..   ..+|+.|++++|+++.+|..   +++|++|++++|. +..+|.. .   .+|+.|++++|.+..    
T Consensus       272 N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p---~~L~~L~Ls~N~L~~----  336 (788)
T PRK15387        272 NPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-P---SELCKLWAYNNQLTS----  336 (788)
T ss_pred             Cchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC-c---ccccccccccCcccc----
Confidence            88777 442   25677888888888888753   4678888888875 7777652 2   356777888777652    


Q ss_pred             cCCcccccccCcccCCCCCCCCEEEeeecCCCCCCc
Q 002432          368 EGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE  403 (922)
Q Consensus       368 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  403 (922)
                                .+ .+  ..+|+.|++++|.+..+|.
T Consensus       337 ----------LP-~l--p~~Lq~LdLS~N~Ls~LP~  359 (788)
T PRK15387        337 ----------LP-TL--PSGLQELSVSDNQLASLPT  359 (788)
T ss_pred             ----------cc-cc--ccccceEecCCCccCCCCC
Confidence                      11 11  1468888888887776654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.40  E-value=1.9e-12  Score=150.39  Aligned_cols=179  Identities=18%  Similarity=0.246  Sum_probs=142.3

Q ss_pred             ecCCCCCCCCCccccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC
Q 002432          192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL  271 (922)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l  271 (922)
                      ..+.++..+|. .+++.++.|++++|.+..+|... ..+|+.|++++|...   .+|..+   ..+|+.|++++|.+..+
T Consensus       185 L~~~~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~Lt---sLP~~l---~~~L~~L~Ls~N~L~~L  256 (754)
T PRK15370        185 LKILGLTTIPA-CIPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLT---SIPATL---PDTIQEMELSINRITEL  256 (754)
T ss_pred             eCCCCcCcCCc-ccccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccc---cCChhh---hccccEEECcCCccCcC
Confidence            33345555554 35678999999999999888755 368999999999876   788765   35799999999999999


Q ss_pred             chhhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCC
Q 002432          272 PSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTR  350 (922)
Q Consensus       272 p~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~  350 (922)
                      |..+.  .+|++|++++|++.. |..+.  .+|++|++++|+++.+|..+.  .+|++|++++|. +..+|.. +  .++
T Consensus       257 P~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~s  326 (754)
T PRK15370        257 PERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPG  326 (754)
T ss_pred             ChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--ccc
Confidence            98875  589999999999988 76664  589999999999999987654  479999999986 8888865 3  368


Q ss_pred             CCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCcc
Q 002432          351 LEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEG  404 (922)
Q Consensus       351 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  404 (922)
                      |+.|++++|.+.              ..+..+.  ++|+.|++++|.+..+|..
T Consensus       327 L~~L~Ls~N~Lt--------------~LP~~l~--~sL~~L~Ls~N~L~~LP~~  364 (754)
T PRK15370        327 LKTLEAGENALT--------------SLPASLP--PELQVLDVSKNQITVLPET  364 (754)
T ss_pred             ceeccccCCccc--------------cCChhhc--CcccEEECCCCCCCcCChh
Confidence            999999999876              2233332  6899999999988777764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.35  E-value=7.7e-13  Score=155.98  Aligned_cols=174  Identities=24%  Similarity=0.292  Sum_probs=123.8

Q ss_pred             cCcceEEEeecCC--CCCCCCC--CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCC
Q 002432          206 LKKCYAISWIDSS--GGELPEG--LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNL  281 (922)
Q Consensus       206 ~~~l~~L~l~~~~--~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L  281 (922)
                      ...++.|-+..|.  +..++..  ..++.||+||+++|....  ++|..+ +.+-+||||+++++.+..+|.++++|+.|
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKL  620 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC--cCChHH-hhhhhhhcccccCCCccccchHHHHHHhh
Confidence            3468999999986  5666653  389999999999986543  899988 99999999999999999999999999999


Q ss_pred             CEEEccCCCC-CC-ccccCCCCcCCEEEeecCCCcc---cchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEE--
Q 002432          282 QTLCLDYSTL-GD-ITIIGKLKNLEILSLIESDIVE---FPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEEL--  354 (922)
Q Consensus       282 ~~L~L~~~~l-~~-p~~i~~L~~L~~L~L~~~~l~~---lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L--  354 (922)
                      .||++..+.- .. |..+..|++||+|.+.......   .-..+.+|.+|+.+...... . .+-.. +..+++|+.+  
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s-~-~~~e~-l~~~~~L~~~~~  697 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS-V-LLLED-LLGMTRLRSLLQ  697 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch-h-HhHhh-hhhhHHHHHHhH
Confidence            9999999884 44 5666679999999998875331   22334556666666554432 1 12122 3344444432  


Q ss_pred             --EccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432          355 --YMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN  399 (922)
Q Consensus       355 --~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  399 (922)
                        .+.++.              ....+..+..+.+|+.|.+......
T Consensus       698 ~l~~~~~~--------------~~~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  698 SLSIEGCS--------------KRTLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             hhhhcccc--------------cceeecccccccCcceEEEEcCCCc
Confidence              222211              2245677788888888888877654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.14  E-value=2.3e-12  Score=135.99  Aligned_cols=179  Identities=24%  Similarity=0.291  Sum_probs=159.3

Q ss_pred             CcceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEE
Q 002432          207 KKCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLC  285 (922)
Q Consensus       207 ~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~  285 (922)
                      ......+++.|++..+|... .+..|..+.+..|.+.   .+|..+ ..+..|.+|||+.|+++.+|..++.|+ |++|.
T Consensus        75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r---~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR---TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLI  149 (722)
T ss_pred             cchhhhhccccccccCchHHHHHHHHHHHHHHhccce---ecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEE
Confidence            34556788889999999877 7788999999998876   788877 899999999999999999999988764 99999


Q ss_pred             ccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccc
Q 002432          286 LDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWK  364 (922)
Q Consensus       286 L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~  364 (922)
                      +++|+++. |+.++.+.+|..||.+.|.+..+|..++.+.+|+.|++..|. +..+|++ ++.| .|..||++.|++.  
T Consensus       150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis--  224 (722)
T KOG0532|consen  150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS--  224 (722)
T ss_pred             EecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee--
Confidence            99999998 999999999999999999999999999999999999999986 8999988 7755 5899999999887  


Q ss_pred             ccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccccc
Q 002432          365 VEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFV  407 (922)
Q Consensus       365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  407 (922)
                                  ..+..+.+|++|++|-+.+|....-|..++.
T Consensus       225 ------------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~  255 (722)
T KOG0532|consen  225 ------------YLPVDFRKMRHLQVLQLENNPLQSPPAQICE  255 (722)
T ss_pred             ------------ecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence                        6789999999999999999999888877633

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.14  E-value=1.1e-12  Score=133.46  Aligned_cols=168  Identities=16%  Similarity=0.153  Sum_probs=101.6

Q ss_pred             cccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCC
Q 002432          676 CFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPG  755 (922)
Q Consensus       676 ~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~  755 (922)
                      .++-+.++++.+|..+++...-.....+..|+.|+.++|..+...+......      +.++|+.|.+..|..++.....
T Consensus       266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~------~~~~L~~l~l~~c~~fsd~~ft  339 (483)
T KOG4341|consen  266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ------HCHNLQVLELSGCQQFSDRGFT  339 (483)
T ss_pred             cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc------CCCceEEEeccccchhhhhhhh
Confidence            4566777777788777764222334566778888888887766554332222      2577888888888877665444


Q ss_pred             cCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCC-CCC-CCCC
Q 002432          756 LHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQG-DFP-QDHL  833 (922)
Q Consensus       756 ~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~-~~~~  833 (922)
                      ....+++.|+.+++.+|-....-                    .+.+...++|.|+.|.+++|....-... .+. ....
T Consensus       340 ~l~rn~~~Le~l~~e~~~~~~d~--------------------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~  399 (483)
T KOG4341|consen  340 MLGRNCPHLERLDLEECGLITDG--------------------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS  399 (483)
T ss_pred             hhhcCChhhhhhcccccceehhh--------------------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence            44457888888888887544332                    1122335688899999998876432200 000 0123


Q ss_pred             CCCccEEEeec-CCCcccchhHHhhcCCCCeEEEecc
Q 002432          834 FGSLKDLEVRD-DDSASVPIGLLEKFHGLENLNLSFC  869 (922)
Q Consensus       834 ~~sL~~L~l~~-~~l~~lp~~~l~~l~~L~~L~l~~c  869 (922)
                      ...|..|.+++ +.+..--...+..+++||.+++.+|
T Consensus       400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             ccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            45666677766 4444433444556666777777666

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.11  E-value=4.5e-13  Score=136.24  Aligned_cols=233  Identities=16%  Similarity=0.150  Sum_probs=140.7

Q ss_pred             CCCcceeeeccc-ceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCC
Q 002432          652 LPNLEALELCEI-NVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEP  730 (922)
Q Consensus       652 l~~L~~L~l~~~-~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~  730 (922)
                      +++|++|+++.| .++.-......+++..++.+...+|..++.-.......+..-+.++++..|..+++......     
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i-----  289 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI-----  289 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHH-----
Confidence            444445555444 33331111122445667777777887765322222334556677788888977776632111     


Q ss_pred             CcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCc
Q 002432          731 PCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNL  810 (922)
Q Consensus       731 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  810 (922)
                       ...+..|+.|..++|.++.+........++++|+.|.+++|.++....                    +.....+++.|
T Consensus       290 -~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--------------------ft~l~rn~~~L  348 (483)
T KOG4341|consen  290 -ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG--------------------FTMLGRNCPHL  348 (483)
T ss_pred             -hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh--------------------hhhhhcCChhh
Confidence             123677999999999988776544334578999999999998876552                    12234678999


Q ss_pred             ceEeechhhhhhhcC-CCCCCCCCCCCccEEEeec-CCCcc-----cchhHHhhcCCCCeEEEecccceEEec--CCccc
Q 002432          811 EELGLSIKDIMMLLQ-GDFPQDHLFGSLKDLEVRD-DDSAS-----VPIGLLEKFHGLENLNLSFCSYKELFS--NGGQV  881 (922)
Q Consensus       811 ~~L~l~~~~~~~~~~-~~~~~~~~~~sL~~L~l~~-~~l~~-----lp~~~l~~l~~L~~L~l~~c~l~~l~~--~~~~~  881 (922)
                      +.+++..|....... ..+  -..++.|++|.+++ ..++.     +.... .....|+.|.+++|+.+.-..  ....+
T Consensus       349 e~l~~e~~~~~~d~tL~sl--s~~C~~lr~lslshce~itD~gi~~l~~~~-c~~~~l~~lEL~n~p~i~d~~Le~l~~c  425 (483)
T KOG4341|consen  349 ERLDLEECGLITDGTLASL--SRNCPRLRVLSLSHCELITDEGIRHLSSSS-CSLEGLEVLELDNCPLITDATLEHLSIC  425 (483)
T ss_pred             hhhcccccceehhhhHhhh--ccCCchhccCChhhhhhhhhhhhhhhhhcc-ccccccceeeecCCCCchHHHHHHHhhC
Confidence            999999886543220 011  23567888888886 22222     12221 356678888888885543211  11336


Q ss_pred             cccceEeccccccccccccCCCCCCCcccccccEE
Q 002432          882 HLIKKLELICLNDLEYLWIPNSKMGDSILQNLEIL  916 (922)
Q Consensus       882 ~sL~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~~l  916 (922)
                      ++|+.+++.+|...++=+..-+.   +.++++++.
T Consensus       426 ~~Leri~l~~~q~vtk~~i~~~~---~~lp~i~v~  457 (483)
T KOG4341|consen  426 RNLERIELIDCQDVTKEAISRFA---THLPNIKVH  457 (483)
T ss_pred             cccceeeeechhhhhhhhhHHHH---hhCccceeh
Confidence            78888888888777765555555   555665554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.02  E-value=1.2e-10  Score=109.85  Aligned_cols=130  Identities=22%  Similarity=0.259  Sum_probs=47.6

Q ss_pred             hCCCCCcEEEeeCCcCccCchhhh-ccCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhh-cCCCCCCEEe
Q 002432          253 TGMRELKVVDLTNMQLFSLPSSID-LLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEEL-GKLTKLRLLD  330 (922)
Q Consensus       253 ~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~  330 (922)
                      .+..++|.|+|.+|.|+.+. .++ .+.+|+.|++++|.|+..+.+..+++|++|++++|.++.++.++ ..+++|++|+
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            34556788888888877763 355 57788888888888888777778888888888888888776555 3678888888


Q ss_pred             ccCCCCCCccCc-chhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEee
Q 002432          331 LTNCFHLKVIAP-NVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIA  394 (922)
Q Consensus       331 l~~~~~l~~~p~-~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  394 (922)
                      +++|. +..+.. ..++.+++|+.|++.+|.+..          ......--+..+|+|+.||-.
T Consensus        95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~----------~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCE----------KKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -TTS----SCCCCGGGGG-TT--EEE-TT-GGGG----------STTHHHHHHHH-TT-SEETTE
T ss_pred             CcCCc-CCChHHhHHHHcCCCcceeeccCCcccc----------hhhHHHHHHHHcChhheeCCE
Confidence            88874 544322 236678888888888887763          111222334566777777654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.97  E-value=2.3e-11  Score=128.54  Aligned_cols=183  Identities=22%  Similarity=0.321  Sum_probs=153.9

Q ss_pred             EEEeecCCCCCCCCC---CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEcc
Q 002432          211 AISWIDSSGGELPEG---LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLD  287 (922)
Q Consensus       211 ~L~l~~~~~~~l~~~---~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~  287 (922)
                      ++.|++.....+|..   ..+..-...+++.|.+.   .+|..+ ..+..|..+.|..|.+..+|..+++|..|.||||+
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~---elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls  129 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS---ELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLS  129 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccc---cCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhc
Confidence            345555555444432   25666777889999877   788887 88899999999999999999999999999999999


Q ss_pred             CCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccccc
Q 002432          288 YSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVE  366 (922)
Q Consensus       288 ~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~  366 (922)
                      .|+++. |..++.|+ |+.|-+++|+++.+|.+|+.+..|..|+.+.|. +..+|.. ++.+.+|+.|.+..|++.    
T Consensus       130 ~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~----  202 (722)
T KOG0532|consen  130 SNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE----  202 (722)
T ss_pred             cchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh----
Confidence            999998 88776654 899999999999999999999999999999986 8999988 999999999999999887    


Q ss_pred             ccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccc-cccccceeEE
Q 002432          367 DEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGF-FVRELERFKI  415 (922)
Q Consensus       367 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~~  415 (922)
                                ..+++++.| .|..|++++|.+..+|..+ .++.|+.+.+
T Consensus       203 ----------~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~L  241 (722)
T KOG0532|consen  203 ----------DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQL  241 (722)
T ss_pred             ----------hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeee
Confidence                      567888855 5889999999999999876 5666666553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.95  E-value=9.6e-10  Score=103.68  Aligned_cols=119  Identities=26%  Similarity=0.343  Sum_probs=32.9

Q ss_pred             cceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhh-hccCCCCEEE
Q 002432          208 KCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLC  285 (922)
Q Consensus       208 ~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~  285 (922)
                      +.|.|++.+|.+..+.... .+.+|++|++++|.+.   .+..  +..+++|++|++++|.|+.+++.+ ..+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~---~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT---KLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS--S-----TT------TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccccchhhhhcCCCEEECCCCCCc---cccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            4455666666665554332 3455566666655544   3332  345555666666666655554433 2455566666


Q ss_pred             ccCCCCCC---ccccCCCCcCCEEEeecCCCcccch----hhcCCCCCCEEec
Q 002432          286 LDYSTLGD---ITIIGKLKNLEILSLIESDIVEFPE----ELGKLTKLRLLDL  331 (922)
Q Consensus       286 L~~~~l~~---p~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~~L~~L~l  331 (922)
                      +++|+|.+   ...+..+++|++|++.+|.++..+.    -+..+++|+.||-
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            65555543   2444455555555555554443321    2344555555543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=1.7e-10  Score=112.17  Aligned_cols=185  Identities=17%  Similarity=0.182  Sum_probs=139.6

Q ss_pred             cccCcceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCcC---------------------CCCCChHHhhCCCCCcEE
Q 002432          204 DALKKCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSV---------------------DVNIPQRFFTGMRELKVV  261 (922)
Q Consensus       204 ~~~~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~---------------------~~~l~~~~~~~l~~Lr~L  261 (922)
                      .+.++++.+.++.+....+.... .-+.|.++.+.....+.                     .|.+...+ ...+.|..|
T Consensus       211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~-dTWq~Ltel  289 (490)
T KOG1259|consen  211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSA-DTWQELTEL  289 (490)
T ss_pred             HHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEec-chHhhhhhc
Confidence            34566677777776654443322 23455555554322110                     11111222 456889999


Q ss_pred             EeeCCcCccCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccC
Q 002432          262 DLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIA  341 (922)
Q Consensus       262 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p  341 (922)
                      ||++|.|+.+.+++.-++.+|+|++++|.|....++..|++|+.||+++|.++++-..=.+|-|.++|.+++|. +..+.
T Consensus       290 DLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LS  368 (490)
T KOG1259|consen  290 DLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETLS  368 (490)
T ss_pred             cccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhhh
Confidence            99999999999999999999999999999999888999999999999999999886666789999999999985 77775


Q ss_pred             cchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCcc
Q 002432          342 PNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEG  404 (922)
Q Consensus       342 ~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  404 (922)
                      .  +++|-+|..|++++|++..            -.....+++++-|+.+.+.+|....++..
T Consensus       369 G--L~KLYSLvnLDl~~N~Ie~------------ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  369 G--LRKLYSLVNLDLSSNQIEE------------LDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             h--hHhhhhheeccccccchhh------------HHHhcccccccHHHHHhhcCCCccccchH
Confidence            3  8899999999999998873            13457889999999999999987766543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.83  E-value=3.5e-09  Score=117.98  Aligned_cols=174  Identities=25%  Similarity=0.315  Sum_probs=125.6

Q ss_pred             CcceEEEeecCCCCCCCCCCCCC--CccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEE
Q 002432          207 KKCYAISWIDSSGGELPEGLECP--QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTL  284 (922)
Q Consensus       207 ~~l~~L~l~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L  284 (922)
                      ..++.+++.++.+..++......  +|+.|++++|...   .+|..+ ..++.|+.|++++|++..+|...+.+..|+.|
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~---~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE---SLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchh---hhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence            45777888888877777766443  7888888887665   554444 77888888888888888887777777888888


Q ss_pred             EccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccc
Q 002432          285 CLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEW  363 (922)
Q Consensus       285 ~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~  363 (922)
                      ++++|.+.. |..++.+.+|++|.+++|.+...+..+.++.++..|.+.+|. +..++.. ++.+.+++.|++++|.+..
T Consensus       192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQISS  269 (394)
T ss_pred             eccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceeccccccccc
Confidence            888888877 666667777888888887666666777788888888777664 5554444 7777888888888777652


Q ss_pred             cccccCCcccccccCcccCCCCCCCCEEEeeecCCCCC
Q 002432          364 KVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL  401 (922)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  401 (922)
                                     +..++.+.+++.|+++++.....
T Consensus       270 ---------------i~~~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         270 ---------------ISSLGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ---------------cccccccCccCEEeccCcccccc
Confidence                           23377777888888887765443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.79  E-value=5e-09  Score=116.70  Aligned_cols=184  Identities=26%  Similarity=0.348  Sum_probs=144.1

Q ss_pred             EEEeecCCC-CCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCC-CCcEEEeeCCcCccCchhhhccCCCCEEEccC
Q 002432          211 AISWIDSSG-GELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMR-ELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDY  288 (922)
Q Consensus       211 ~L~l~~~~~-~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~  288 (922)
                      .+....+.+ .........+.++.|++.++...   +++... ..++ +|+.|++++|.+..+|..++.+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~---~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT---DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccc---cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCC
Confidence            355555555 33333346688999999998876   677655 5564 89999999999999988899999999999999


Q ss_pred             CCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccc
Q 002432          289 STLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVED  367 (922)
Q Consensus       289 ~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~  367 (922)
                      |++.+ |...+.+.+|+.|++++|+++.+|..+..+..|++|.+++|. ....+.. +.+++++..|.+.++.+.     
T Consensus       173 N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~-----  245 (394)
T COG4886         173 NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE-----  245 (394)
T ss_pred             chhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee-----
Confidence            99998 666668999999999999999999888888889999999985 4444444 788999999888877665     


Q ss_pred             cCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccccccccceeE
Q 002432          368 EGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFK  414 (922)
Q Consensus       368 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~  414 (922)
                               ..+..++.++.+++|++++|.+..++....+.+++.+.
T Consensus       246 ---------~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~  283 (394)
T COG4886         246 ---------DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELD  283 (394)
T ss_pred             ---------eccchhccccccceeccccccccccccccccCccCEEe
Confidence                     33577888889999999999988777633444444444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.77  E-value=3e-09  Score=115.11  Aligned_cols=182  Identities=19%  Similarity=0.150  Sum_probs=103.8

Q ss_pred             CcceEEEeecCCCCC-CCCCC-CC---CCccEEEccCCCCcCC--CCCChHHhhCC-CCCcEEEeeCCcCc-----cCch
Q 002432          207 KKCYAISWIDSSGGE-LPEGL-EC---PQLELLLLSSEHSSVD--VNIPQRFFTGM-RELKVVDLTNMQLF-----SLPS  273 (922)
Q Consensus       207 ~~l~~L~l~~~~~~~-l~~~~-~~---~~Lr~L~l~~~~~~~~--~~l~~~~~~~l-~~Lr~L~L~~~~i~-----~lp~  273 (922)
                      .+++.|++.+|.+.. .+..+ .+   ++|+.|++++|.....  ..+.. .+..+ ++|+.|++++|.++     .++.
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            467777777776642 11111 22   4477777777754310  01111 23455 77777777777766     2344


Q ss_pred             hhhccCCCCEEEccCCCCCC------ccccCCCCcCCEEEeecCCCc-----ccchhhcCCCCCCEEeccCCCCCCccCc
Q 002432          274 SIDLLVNLQTLCLDYSTLGD------ITIIGKLKNLEILSLIESDIV-----EFPEELGKLTKLRLLDLTNCFHLKVIAP  342 (922)
Q Consensus       274 ~i~~L~~L~~L~L~~~~l~~------p~~i~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~~p~  342 (922)
                      .+..+.+|++|++++|.+..      +..+..+++|++|++++|.++     .++..+.++++|++|++++|. ++....
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~  238 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGA  238 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHH
Confidence            56666777777777777663      134455567777777777664     234455667777777777764 443111


Q ss_pred             chhC-----CCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432          343 NVIA-----SFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN  399 (922)
Q Consensus       343 ~~l~-----~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  399 (922)
                      ..+.     ..+.|++|++++|.+..         .........+..+++|+.+++++|...
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~~---------~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDITD---------DGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCCc---------HHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            1121     23677777777776641         001122344555567777777777654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.77  E-value=6.9e-09  Score=112.26  Aligned_cols=131  Identities=24%  Similarity=0.219  Sum_probs=73.1

Q ss_pred             CCCCccEEEccCCCCcCCCCCChHHhhCCCC---CcEEEeeCCcCcc-----Cchhhhcc-CCCCEEEccCCCCCC----
Q 002432          227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRE---LKVVDLTNMQLFS-----LPSSIDLL-VNLQTLCLDYSTLGD----  293 (922)
Q Consensus       227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~---Lr~L~L~~~~i~~-----lp~~i~~L-~~L~~L~L~~~~l~~----  293 (922)
                      .+++|+.|++++|...   ......|..+..   |++|++++|.+..     +...+..+ ++|+.|++++|.+..    
T Consensus        79 ~~~~L~~L~l~~~~~~---~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          79 KGCGLQELDLSDNALG---PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             hcCceeEEEccCCCCC---hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            4556777777666543   112222233333   7777777766651     23345555 667777777776652    


Q ss_pred             --ccccCCCCcCCEEEeecCCCc-----ccchhhcCCCCCCEEeccCCCCCCcc-----CcchhCCCCCCCEEEccCCcc
Q 002432          294 --ITIIGKLKNLEILSLIESDIV-----EFPEELGKLTKLRLLDLTNCFHLKVI-----APNVIASFTRLEELYMSNCFV  361 (922)
Q Consensus       294 --p~~i~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~~-----p~~~l~~L~~L~~L~L~~~~~  361 (922)
                        +..+..+.+|++|++++|.++     .++..+..+++|++|++++|. ++..     +. .+.++++|++|++++|.+
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~-~~~~~~~L~~L~ls~n~l  233 (319)
T cd00116         156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAE-TLASLKSLEVLNLGDNNL  233 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHH-HhcccCCCCEEecCCCcC
Confidence              234555666777777766655     233444555667777776664 3321     22 245566677777766655


Q ss_pred             c
Q 002432          362 E  362 (922)
Q Consensus       362 ~  362 (922)
                      .
T Consensus       234 ~  234 (319)
T cd00116         234 T  234 (319)
T ss_pred             c
Confidence            4

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.77  E-value=9.3e-10  Score=107.10  Aligned_cols=129  Identities=24%  Similarity=0.229  Sum_probs=109.6

Q ss_pred             CCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCCc-cccCCCCcCCEE
Q 002432          228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI-TIIGKLKNLEIL  306 (922)
Q Consensus       228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p-~~i~~L~~L~~L  306 (922)
                      ...|..+++++|.+.   .+.++. .-.+.+|+|++++|.|..+-. +..|++|+.|||++|.+.+. .--.+|-|.++|
T Consensus       283 Wq~LtelDLS~N~I~---~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT---QIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL  357 (490)
T ss_pred             Hhhhhhccccccchh---hhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence            356889999999876   677766 778999999999999987754 88999999999999998883 444588999999


Q ss_pred             EeecCCCcccchhhcCCCCCCEEeccCCCCCCccCc-chhCCCCCCCEEEccCCcccc
Q 002432          307 SLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAP-NVIASFTRLEELYMSNCFVEW  363 (922)
Q Consensus       307 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~l~~L~~L~~L~L~~~~~~~  363 (922)
                      .+++|.+..+ .++++|++|..||+++|+ +..+.. ..||+|+.|+++.+.+|.+..
T Consensus       358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  358 KLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             ehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCccc
Confidence            9999999888 479999999999999986 665532 349999999999999998764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=3e-08  Score=102.30  Aligned_cols=189  Identities=23%  Similarity=0.169  Sum_probs=126.0

Q ss_pred             cCcceEEEeecCCCCCCCC--CC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchh--hhccCC
Q 002432          206 LKKCYAISWIDSSGGELPE--GL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSS--IDLLVN  280 (922)
Q Consensus       206 ~~~l~~L~l~~~~~~~l~~--~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~--i~~L~~  280 (922)
                      .+++|.+++.++.....+.  .. .|+++|.|++++|-+.-. ..-..+...+++|+.|+++.|.+...-++  -..+.+
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw-~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNW-FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhH-HHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            5678888888887766653  23 788999999988754311 11233447789999999999887643322  236778


Q ss_pred             CCEEEccCCCCCC--c-cccCCCCcCCEEEeecCC-CcccchhhcCCCCCCEEeccCCCCCCccC-cchhCCCCCCCEEE
Q 002432          281 LQTLCLDYSTLGD--I-TIIGKLKNLEILSLIESD-IVEFPEELGKLTKLRLLDLTNCFHLKVIA-PNVIASFTRLEELY  355 (922)
Q Consensus       281 L~~L~L~~~~l~~--p-~~i~~L~~L~~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~~p-~~~l~~L~~L~~L~  355 (922)
                      |+.|.|+.|.++.  . .....+++|+.|++.+|. +..-......+..|+.|+|++|. +-..+ ....+.++.|+.|+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhh
Confidence            9999999998874  3 455678889999998883 33223345567788899999886 44443 11277888888888


Q ss_pred             ccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCc
Q 002432          356 MSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE  403 (922)
Q Consensus       356 L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  403 (922)
                      ++.|.+..   +...    ...........++|+.|++..|.+..++.
T Consensus       278 ls~tgi~s---i~~~----d~~s~~kt~~f~kL~~L~i~~N~I~~w~s  318 (505)
T KOG3207|consen  278 LSSTGIAS---IAEP----DVESLDKTHTFPKLEYLNISENNIRDWRS  318 (505)
T ss_pred             ccccCcch---hcCC----CccchhhhcccccceeeecccCccccccc
Confidence            88887652   1110    01122334567788899988888765554

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.46  E-value=3.9e-07  Score=96.57  Aligned_cols=162  Identities=19%  Similarity=0.256  Sum_probs=96.7

Q ss_pred             ccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCc
Q 002432          677 FQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGL  756 (922)
Q Consensus       677 l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~  756 (922)
                      +..+++|+|++| .++.+|     .-.++|++|.+++|.+++.++..          -.++|++|.+++|..+..+|   
T Consensus        51 ~~~l~~L~Is~c-~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~~----------LP~nLe~L~Ls~Cs~L~sLP---  111 (426)
T PRK15386         51 ARASGRLYIKDC-DIESLP-----VLPNELTEITIENCNNLTTLPGS----------IPEGLEKLTVCHCPEISGLP---  111 (426)
T ss_pred             hcCCCEEEeCCC-CCcccC-----CCCCCCcEEEccCCCCcccCCch----------hhhhhhheEccCcccccccc---
Confidence            477888888888 777764     12346888888888887666420          12468888888887776553   


Q ss_pred             CcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCC
Q 002432          757 HTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGS  836 (922)
Q Consensus       757 ~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~s  836 (922)
                           ++|+.|++.+ .....++.                         ..++|++|.+.+++...  +...+ ...+++
T Consensus       112 -----~sLe~L~L~~-n~~~~L~~-------------------------LPssLk~L~I~~~n~~~--~~~lp-~~LPsS  157 (426)
T PRK15386        112 -----ESVRSLEIKG-SATDSIKN-------------------------VPNGLTSLSINSYNPEN--QARID-NLISPS  157 (426)
T ss_pred             -----cccceEEeCC-CCCccccc-------------------------CcchHhheecccccccc--ccccc-cccCCc
Confidence                 3567777753 33333211                         13467777775433111  11111 123478


Q ss_pred             ccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEe-cCCccccccceEeccccccc
Q 002432          837 LKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELF-SNGGQVHLIKKLELICLNDL  895 (922)
Q Consensus       837 L~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~-~~~~~~~sL~~L~i~~c~~L  895 (922)
                      |++|.++++....+|..+   ..+|+.|+++.|....+. +....++++ .|++.+|-++
T Consensus       158 Lk~L~Is~c~~i~LP~~L---P~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL  213 (426)
T PRK15386        158 LKTLSLTGCSNIILPEKL---PESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLL  213 (426)
T ss_pred             ccEEEecCCCcccCcccc---cccCcEEEecccccccccCccccccccc-Eechhhhccc
Confidence            888988886665566443   268888888776322211 112235667 7888777554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=6.8e-08  Score=99.75  Aligned_cols=179  Identities=24%  Similarity=0.244  Sum_probs=132.8

Q ss_pred             cccCcceEEEeecCCCCCCC---CCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc--cCchhhhc
Q 002432          204 DALKKCYAISWIDSSGGELP---EGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF--SLPSSIDL  277 (922)
Q Consensus       204 ~~~~~l~~L~l~~~~~~~l~---~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~~  277 (922)
                      .....+|.|+++.|-+....   ... .+++|+.|+++.|....  -.....-..+.+|+.|.+++|.++  .+-.-...
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~--~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN--FISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC--CccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            55788999999999774332   222 78999999999997642  111111235789999999999987  33334557


Q ss_pred             cCCCCEEEccCCC-CCC-ccccCCCCcCCEEEeecCCCcccc--hhhcCCCCCCEEeccCCCCCCccC--cc----hhCC
Q 002432          278 LVNLQTLCLDYST-LGD-ITIIGKLKNLEILSLIESDIVEFP--EELGKLTKLRLLDLTNCFHLKVIA--PN----VIAS  347 (922)
Q Consensus       278 L~~L~~L~L~~~~-l~~-p~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p--~~----~l~~  347 (922)
                      +++|..|+|.+|. +.. -....-++.|+.|||++|++...+  ..++.++.|+.|+++.|. +.++.  +.    ....
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~  299 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHT  299 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcc
Confidence            8899999999996 322 455567899999999999888776  457999999999999974 66542  21    1256


Q ss_pred             CCCCCEEEccCCccc-ccccccCCcccccccCcccCCCCCCCCEEEeeecCC
Q 002432          348 FTRLEELYMSNCFVE-WKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEND  398 (922)
Q Consensus       348 L~~L~~L~L~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  398 (922)
                      +.+|+.|++..|++. |             ..+..+..+++|+.|.+.++..
T Consensus       300 f~kL~~L~i~~N~I~~w-------------~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  300 FPKLEYLNISENNIRDW-------------RSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             cccceeeecccCccccc-------------cccchhhccchhhhhhcccccc
Confidence            889999999999874 3             4566777778888888877764

>PLN03150 hypothetical protein; Provisional

Probab=98.43  E-value=6e-07  Score=104.65  Aligned_cols=105  Identities=23%  Similarity=0.323  Sum_probs=83.6

Q ss_pred             CCcEEEeeCCcCc-cCchhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCc-ccchhhcCCCCCCEEecc
Q 002432          257 ELKVVDLTNMQLF-SLPSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIV-EFPEELGKLTKLRLLDLT  332 (922)
Q Consensus       257 ~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~  332 (922)
                      .++.|+|++|.+. .+|..++++++|++|+|++|.+..  |..++.+++|++|++++|+++ .+|..++++++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4677888888887 578888888888888888888875  678888888888998888887 678888888889999988


Q ss_pred             CCCCCCccCcchhCC-CCCCCEEEccCCccc
Q 002432          333 NCFHLKVIAPNVIAS-FTRLEELYMSNCFVE  362 (922)
Q Consensus       333 ~~~~l~~~p~~~l~~-L~~L~~L~L~~~~~~  362 (922)
                      +|...+.+|.. ++. ..++..+++.+|...
T Consensus       499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCcccccCChH-HhhccccCceEEecCCccc
Confidence            88755677776 555 356777888777544

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.39  E-value=6.9e-07  Score=94.74  Aligned_cols=138  Identities=19%  Similarity=0.222  Sum_probs=99.2

Q ss_pred             HhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccc
Q 002432          700 IKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFA  779 (922)
Q Consensus       700 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~  779 (922)
                      +..+..++.|+|++| .++.++.  .         -++|++|.+++|.+++.+|..    ..++|+.|++++|.++..+|
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~--L---------P~sLtsL~Lsnc~nLtsLP~~----LP~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV--L---------PNELTEITIENCNNLTTLPGS----IPEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC--C---------CCCCcEEEccCCCCcccCCch----hhhhhhheEccCcccccccc
Confidence            445789999999999 7887741  1         246999999999999988753    25689999999998887774


Q ss_pred             cccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeec-CCC--cccchhHHh
Q 002432          780 SESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRD-DDS--ASVPIGLLE  856 (922)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~-~~l--~~lp~~~l~  856 (922)
                                                  ++|+.|+++.+....+  .     ..+++|+.|.+.+ +..  ..+|. .  
T Consensus       112 ----------------------------~sLe~L~L~~n~~~~L--~-----~LPssLk~L~I~~~n~~~~~~lp~-~--  153 (426)
T PRK15386        112 ----------------------------ESVRSLEIKGSATDSI--K-----NVPNGLTSLSINSYNPENQARIDN-L--  153 (426)
T ss_pred             ----------------------------cccceEEeCCCCCccc--c-----cCcchHhheecccccccccccccc-c--
Confidence                                        3678888876554332  1     2346899999865 222  22221 1  


Q ss_pred             hcCCCCeEEEecccceEEecCCccccccceEeccccc
Q 002432          857 KFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLN  893 (922)
Q Consensus       857 ~l~~L~~L~l~~c~l~~l~~~~~~~~sL~~L~i~~c~  893 (922)
                      -.++|+.|++++|....+++  ..|.+|+.|+++.+.
T Consensus       154 LPsSLk~L~Is~c~~i~LP~--~LP~SLk~L~ls~n~  188 (426)
T PRK15386        154 ISPSLKTLSLTGCSNIILPE--KLPESLQSITLHIEQ  188 (426)
T ss_pred             cCCcccEEEecCCCcccCcc--cccccCcEEEecccc
Confidence            23789999999997665543  357899999997653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.38  E-value=2.2e-07  Score=71.71  Aligned_cols=56  Identities=34%  Similarity=0.460  Sum_probs=32.9

Q ss_pred             CCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCC
Q 002432          257 ELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESD  312 (922)
Q Consensus       257 ~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~  312 (922)
                      +|++|++++|+++.+| ..|..+++|++|++++|.+..  +..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4556666666666554 345556666666666666555  3556666666666666654

...

>PLN03150 hypothetical protein; Provisional

Probab=98.36  E-value=8.2e-07  Score=103.53  Aligned_cols=105  Identities=22%  Similarity=0.239  Sum_probs=87.7

Q ss_pred             CCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCc-ccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEc
Q 002432          280 NLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYM  356 (922)
Q Consensus       280 ~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L  356 (922)
                      .++.|+|++|.+..  |..++++++|++|+|++|.++ .+|..++++++|++|++++|...+.+|.. ++++++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence            47889999999876  788999999999999999988 78889999999999999999755567776 999999999999


Q ss_pred             cCCcccccccccCCcccccccCcccCCCC-CCCCEEEeeecCC
Q 002432          357 SNCFVEWKVEDEGSSSKKSKASLDELMPL-PRLTTLEIAVEND  398 (922)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~  398 (922)
                      ++|.+.+             ..+..++.+ .++..+++.+|..
T Consensus       498 s~N~l~g-------------~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        498 NGNSLSG-------------RVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             cCCcccc-------------cCChHHhhccccCceEEecCCcc
Confidence            9998876             445555543 4677888888764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.35  E-value=3.2e-07  Score=70.84  Aligned_cols=60  Identities=27%  Similarity=0.436  Sum_probs=32.0

Q ss_pred             cCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEeccc
Q 002432          808 PNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCS  870 (922)
Q Consensus       808 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~  870 (922)
                      |+|++|++++|++..+.++.|.   .+++|++|++++|.+..+|.+.+.++++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~---~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFS---NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTT---TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHc---CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            3455555555555555444433   44555555555555555555555555555555555553

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.15  E-value=2.4e-07  Score=103.18  Aligned_cols=152  Identities=24%  Similarity=0.299  Sum_probs=79.5

Q ss_pred             CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEE
Q 002432          227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEIL  306 (922)
Q Consensus       227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L  306 (922)
                      .+.+|+.|++.+|.+.   .+... +..+.+|++|++++|.|+++.. +..+..|+.|++.+|.|.....+..+.+|+.+
T Consensus        93 ~~~~l~~l~l~~n~i~---~i~~~-l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l  167 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIE---KIENL-LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDISGLESLKSLKLL  167 (414)
T ss_pred             cccceeeeeccccchh---hcccc-hhhhhcchheeccccccccccc-hhhccchhhheeccCcchhccCCccchhhhcc
Confidence            4555666666655543   22221 2445666666666666665532 44555566666666666665555556666666


Q ss_pred             EeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCC
Q 002432          307 SLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPL  385 (922)
Q Consensus       307 ~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  385 (922)
                      ++++|.++.+... ...+.+++.+.+.+|. +..+..  +..+..+..+++..|.+.               .+.++..+
T Consensus       168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~---------------~~~~l~~~  229 (414)
T KOG0531|consen  168 DLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKIS---------------KLEGLNEL  229 (414)
T ss_pred             cCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccce---------------eccCcccc
Confidence            6666666555432 3555666666666553 333321  233333333444444433               12333333


Q ss_pred             CC--CCEEEeeecCCCCC
Q 002432          386 PR--LTTLEIAVENDNAL  401 (922)
Q Consensus       386 ~~--L~~L~l~~~~~~~~  401 (922)
                      ..  |+.+++.++.....
T Consensus       230 ~~~~L~~l~l~~n~i~~~  247 (414)
T KOG0531|consen  230 VMLHLRELYLSGNRISRS  247 (414)
T ss_pred             hhHHHHHHhcccCccccc
Confidence            33  67777777776554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=4.3e-08  Score=95.86  Aligned_cols=64  Identities=28%  Similarity=0.374  Sum_probs=33.2

Q ss_pred             CCCcCCEEEeecCCCc-ccchhhcCCCCCCEEeccCCCCCCccCcc-hhCCCCCCCEEEccCCccc
Q 002432          299 KLKNLEILSLIESDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAPN-VIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       299 ~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-~l~~L~~L~~L~L~~~~~~  362 (922)
                      .+.+|+.|.+.|+++. .+-..|.+-.+|+.|+++.|++++..... .+.+++.|+.|++++|...
T Consensus       208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~  273 (419)
T KOG2120|consen  208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF  273 (419)
T ss_pred             HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence            3344444444444333 22334555555666666665555443221 2456777777777777654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.07  E-value=5e-06  Score=58.41  Aligned_cols=37  Identities=38%  Similarity=0.564  Sum_probs=21.1

Q ss_pred             CCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC
Q 002432          257 ELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD  293 (922)
Q Consensus       257 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~  293 (922)
                      +|++|++++|+|+++|..+++|++|++|++++|.+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            4566666666666665556666666666666665554

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.02  E-value=1.3e-07  Score=103.34  Aligned_cols=176  Identities=20%  Similarity=0.202  Sum_probs=93.7

Q ss_pred             cCcceEEEeecCCCCCCCCCCCC-CCccEEEccCCCCc-------CCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhc
Q 002432          206 LKKCYAISWIDSSGGELPEGLEC-PQLELLLLSSEHSS-------VDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDL  277 (922)
Q Consensus       206 ~~~l~~L~l~~~~~~~l~~~~~~-~~Lr~L~l~~~~~~-------~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~  277 (922)
                      .+.+|+|-+.++.+........+ ..|+.|.....-..       ..|++..+.  ....|.+.+.++|.+..+-.++.-
T Consensus       108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SLql  185 (1096)
T KOG1859|consen  108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESLQL  185 (1096)
T ss_pred             ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHHHH
Confidence            46788888888877543322211 23334433221000       001111111  123455566666666666566666


Q ss_pred             cCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEc
Q 002432          278 LVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYM  356 (922)
Q Consensus       278 L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L  356 (922)
                      ++.|+.|+|++|++.+...+..|++|++|||++|.++.+|.- ...+ +|+.|++++|. ++.+-.  +.+|++|+.|++
T Consensus       186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~g--ie~LksL~~LDl  261 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA-LTTLRG--IENLKSLYGLDL  261 (1096)
T ss_pred             HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccH-HHhhhh--HHhhhhhhccch
Confidence            666666666666666655666666666666666666666542 1222 26666666653 555532  666666666666


Q ss_pred             cCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432          357 SNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN  399 (922)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  399 (922)
                      ++|-+..            ...+..+..+..|+.|.+.||...
T Consensus       262 syNll~~------------hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  262 SYNLLSE------------HSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hHhhhhc------------chhhhHHHHHHHHHHHhhcCCccc
Confidence            6665542            123444555556666666666543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.99  E-value=8.2e-08  Score=104.89  Aligned_cols=129  Identities=17%  Similarity=0.185  Sum_probs=100.6

Q ss_pred             CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-c-cccCCCCcCC
Q 002432          227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLE  304 (922)
Q Consensus       227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~  304 (922)
                      ....|.+.++++|...   .+..+ +.-++.|+.|+|++|++.+.. .+..|.+|++|||++|.+.. | -+...+. |+
T Consensus       162 ~Wn~L~~a~fsyN~L~---~mD~S-Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~  235 (1096)
T KOG1859|consen  162 VWNKLATASFSYNRLV---LMDES-LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQ  235 (1096)
T ss_pred             hhhhHhhhhcchhhHH---hHHHH-HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-he
Confidence            4457778888888654   34444 477899999999999998875 78899999999999999988 4 2233344 99


Q ss_pred             EEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432          305 ILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       305 ~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      .|++++|.++++ .+|.+|.+|+.||+++|-..+.---..++.|..|++|+|.||.+-
T Consensus       236 ~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  236 LLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            999999999988 579999999999999984222222223778889999999999764

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.96  E-value=1.8e-06  Score=87.08  Aligned_cols=182  Identities=18%  Similarity=0.186  Sum_probs=130.1

Q ss_pred             cceEEEeecCCCC--CCCC---CC-CCCCccEEEccCCCCcCC-CCC-C--------hHHhhCCCCCcEEEeeCCcCccC
Q 002432          208 KCYAISWIDSSGG--ELPE---GL-ECPQLELLLLSSEHSSVD-VNI-P--------QRFFTGMRELKVVDLTNMQLFSL  271 (922)
Q Consensus       208 ~l~~L~l~~~~~~--~l~~---~~-~~~~Lr~L~l~~~~~~~~-~~l-~--------~~~~~~l~~Lr~L~L~~~~i~~l  271 (922)
                      +++.++|++|.++  .++.   .+ .+..|+.|.+.+|..... |.. .        ....+.-..||++....|.+..-
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence            7899999999883  2322   22 788999999998876421 111 0        11124568899999999988743


Q ss_pred             -----chhhhccCCCCEEEccCCCCCCc------cccCCCCcCCEEEeecCCCc-----ccchhhcCCCCCCEEeccCCC
Q 002432          272 -----PSSIDLLVNLQTLCLDYSTLGDI------TIIGKLKNLEILSLIESDIV-----EFPEELGKLTKLRLLDLTNCF  335 (922)
Q Consensus       272 -----p~~i~~L~~L~~L~L~~~~l~~p------~~i~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~  335 (922)
                           ...+...+.|+.+.++.|.|..+      ..+..+++|+.|||..|-++     .+-..+..+++|+.|++++|.
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence                 34577788999999999998652      56889999999999999766     344557788899999999985


Q ss_pred             CCCccC-----cchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432          336 HLKVIA-----PNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN  399 (922)
Q Consensus       336 ~l~~~p-----~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  399 (922)
                       ++.--     ...-...++|++|.+.+|.+..+         ........+...+.|+.|++++|...
T Consensus       253 -l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d---------a~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  253 -LENEGAIAFVDALKESAPSLEVLELAGNEITRD---------AALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             -cccccHHHHHHHHhccCCCCceeccCcchhHHH---------HHHHHHHHHhcchhhHHhcCCccccc
Confidence             44321     22123478999999999988741         11123345566889999999999864

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.95  E-value=1.4e-06  Score=97.07  Aligned_cols=172  Identities=24%  Similarity=0.297  Sum_probs=130.5

Q ss_pred             cccCcceEEEeecCCCCCCCC-CCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCC
Q 002432          204 DALKKCYAISWIDSSGGELPE-GLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQ  282 (922)
Q Consensus       204 ~~~~~l~~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~  282 (922)
                      ....+++.+++.+|.+..+.. ...+.+|++|++++|.+.   ++..  +..+..|+.|++++|.|..++. +..+..|+
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~---~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~  165 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT---KLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLK  165 (414)
T ss_pred             ccccceeeeeccccchhhcccchhhhhcchheeccccccc---cccc--hhhccchhhheeccCcchhccC-Cccchhhh
Confidence            345788999999999988888 558999999999999876   4443  3677889999999999998754 56689999


Q ss_pred             EEEccCCCCCCccc--cCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCC--CCEEEccC
Q 002432          283 TLCLDYSTLGDITI--IGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTR--LEELYMSN  358 (922)
Q Consensus       283 ~L~L~~~~l~~p~~--i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~--L~~L~L~~  358 (922)
                      .+++++|.+...+.  ...+.+|+.+++.+|.+..+. ++..+..+..+++..|. +..+-.  +..+..  |+++++.+
T Consensus       166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~-i~~~~~--l~~~~~~~L~~l~l~~  241 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNK-ISKLEG--LNELVMLHLRELYLSG  241 (414)
T ss_pred             cccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccccc-ceeccC--cccchhHHHHHHhccc
Confidence            99999999988544  689999999999999887653 45555666666777764 554432  444444  89999998


Q ss_pred             CcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432          359 CFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN  399 (922)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  399 (922)
                      +.+..              ....+..+..+..|++..+...
T Consensus       242 n~i~~--------------~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  242 NRISR--------------SPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             Ccccc--------------ccccccccccccccchhhcccc
Confidence            87762              1156667777778887766644

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.94  E-value=1.3e-05  Score=56.26  Aligned_cols=38  Identities=39%  Similarity=0.567  Sum_probs=19.0

Q ss_pred             cCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCcc
Q 002432          302 NLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVI  340 (922)
Q Consensus       302 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~  340 (922)
                      +|++|++++|+++.+|..+++|++|++|++++|. ++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence            4555555555555555445555555555555553 4444

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.86  E-value=4.3e-06  Score=96.94  Aligned_cols=125  Identities=20%  Similarity=0.217  Sum_probs=83.5

Q ss_pred             CcceEEEeecCCCC--CCCCC--CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCC
Q 002432          207 KKCYAISWIDSSGG--ELPEG--LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQ  282 (922)
Q Consensus       207 ~~l~~L~l~~~~~~--~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~  282 (922)
                      .++++|++.|...-  .-+..  ..++.||+|.+.+-....  +--...+..+++|+.||+|+++++.+ ..+++|++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc--hhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence            46778888775431  11111  167888888888754321  11234457888999999999988888 6788899999


Q ss_pred             EEEccCCCCCC---ccccCCCCcCCEEEeecCCCcccch-------hhcCCCCCCEEeccCC
Q 002432          283 TLCLDYSTLGD---ITIIGKLKNLEILSLIESDIVEFPE-------ELGKLTKLRLLDLTNC  334 (922)
Q Consensus       283 ~L~L~~~~l~~---p~~i~~L~~L~~L~L~~~~l~~lp~-------~i~~L~~L~~L~l~~~  334 (922)
                      +|.+++=.+..   ...+-.|++|++||+|......-+.       .-..|++||.||.++.
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence            99888877764   4677788888888888764332221       1133667777776654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.74  E-value=2.4e-06  Score=74.01  Aligned_cols=90  Identities=20%  Similarity=0.221  Sum_probs=54.5

Q ss_pred             hCCCCCcEEEeeCCcCccCchhhhcc-CCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEe
Q 002432          253 TGMRELKVVDLTNMQLFSLPSSIDLL-VNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLD  330 (922)
Q Consensus       253 ~~l~~Lr~L~L~~~~i~~lp~~i~~L-~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  330 (922)
                      .+..+|...+|++|.++++|+.|... +.+++|++.+|+|.+ |..+..++.|+.|+++.|.+...|..|..|.+|-.|+
T Consensus        50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence            44455666666666666666655433 256666666666666 6556666666666666666666666666666666666


Q ss_pred             ccCCCCCCccCcc
Q 002432          331 LTNCFHLKVIAPN  343 (922)
Q Consensus       331 l~~~~~l~~~p~~  343 (922)
                      ..+|. ...+|..
T Consensus       130 s~~na-~~eid~d  141 (177)
T KOG4579|consen  130 SPENA-RAEIDVD  141 (177)
T ss_pred             CCCCc-cccCcHH
Confidence            66653 4445443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=2.8e-06  Score=83.46  Aligned_cols=61  Identities=21%  Similarity=0.188  Sum_probs=31.1

Q ss_pred             CCcceeeeccc--ceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecc
Q 002432          653 PNLEALELCEI--NVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNC  714 (922)
Q Consensus       653 ~~L~~L~l~~~--~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c  714 (922)
                      +.|..|+|+||  ++..-....+...+|+|.+||+++|..++.- -...+..++.|++|.++.|
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRC  348 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRC  348 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhh
Confidence            45555566655  3322222222234566666666666666541 2233455566666666666

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.68  E-value=2.9e-05  Score=90.21  Aligned_cols=132  Identities=20%  Similarity=0.220  Sum_probs=76.6

Q ss_pred             CCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc--cCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEE
Q 002432          229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF--SLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEIL  306 (922)
Q Consensus       229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L  306 (922)
                      .+|+.|+++|.... ....|..+...++.||.|.+++-.+.  ++-.-..++++|+.||++++.++....+++|++||.|
T Consensus       122 ~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchh-hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence            57777777775432 23455555566777777777776554  2233345667777777777777777777777777777


Q ss_pred             EeecCCCccc--chhhcCCCCCCEEeccCCCCCCccCc------chhCCCCCCCEEEccCCccc
Q 002432          307 SLIESDIVEF--PEELGKLTKLRLLDLTNCFHLKVIAP------NVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       307 ~L~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~p~------~~l~~L~~L~~L~L~~~~~~  362 (922)
                      .+.+=.+..-  -..+-+|++|++||++... ....+.      +.-..|++||.||.+++.+.
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~-~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDK-NNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccc-cccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            6665444421  1345667777777776643 222111      00123666666666655443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.66  E-value=3.8e-06  Score=72.86  Aligned_cols=108  Identities=17%  Similarity=0.258  Sum_probs=90.6

Q ss_pred             ceEEEeecCCCCCCCCCC----CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEE
Q 002432          209 CYAISWIDSSGGELPEGL----ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTL  284 (922)
Q Consensus       209 l~~L~l~~~~~~~l~~~~----~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L  284 (922)
                      ...++++.|.+..+++..    +...|...++++|.+.   ++|..+-.+++.+..|++++|.|.++|..+..++.||.|
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk---~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK---KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh---hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence            345666677666555432    6677888899999876   788888778889999999999999999999999999999


Q ss_pred             EccCCCCCC-ccccCCCCcCCEEEeecCCCcccchh
Q 002432          285 CLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEE  319 (922)
Q Consensus       285 ~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~  319 (922)
                      +++.|.+.. |..|..|.+|-+|+..+|.+..+|..
T Consensus       106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             ccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            999999887 98888999999999999988888765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.61  E-value=2.6e-06  Score=98.25  Aligned_cols=66  Identities=23%  Similarity=0.321  Sum_probs=46.0

Q ss_pred             CCCcceeeecccc-eeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEeccccc
Q 002432          652 LPNLEALELCEIN-VKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGL  717 (922)
Q Consensus       652 l~~L~~L~l~~~~-l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l  717 (922)
                      +++|+.|+++.|. +++.........+++|++|.+.+|..+++..-......+++|++|+|++|..+
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            4666777777773 55543333334478888888888887766555556777888999999888776

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.60  E-value=9.1e-05  Score=69.21  Aligned_cols=124  Identities=27%  Similarity=0.342  Sum_probs=76.5

Q ss_pred             cEEEeeCCcCccCchhhh-ccCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcC-CCCCCEEeccCCCC
Q 002432          259 KVVDLTNMQLFSLPSSID-LLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGK-LTKLRLLDLTNCFH  336 (922)
Q Consensus       259 r~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~-L~~L~~L~l~~~~~  336 (922)
                      |.++|.+.++..+-. ++ -+.+...+||+.|.+.....|..+..|.+|.+..|.|+.+-..+.. +++|+.|.+.+|+ 
T Consensus        22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-   99 (233)
T KOG1644|consen   22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-   99 (233)
T ss_pred             cccccccccccchhh-ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-
Confidence            444555544433222 22 1335667777777777766777777788888877777777555543 4567888777764 


Q ss_pred             CCc---cCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeec
Q 002432          337 LKV---IAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVE  396 (922)
Q Consensus       337 l~~---~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  396 (922)
                      +..   +.+  +..+++|+.|.+-+|.+..          ....-.--+..+++|+.|+....
T Consensus       100 i~~l~dl~p--La~~p~L~~Ltll~Npv~~----------k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  100 IQELGDLDP--LASCPKLEYLTLLGNPVEH----------KKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             hhhhhhcch--hccCCccceeeecCCchhc----------ccCceeEEEEecCcceEeehhhh
Confidence            333   333  6677788888877776653          11133345667778888887644

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.42  E-value=0.00024  Score=66.43  Aligned_cols=100  Identities=23%  Similarity=0.367  Sum_probs=57.2

Q ss_pred             CccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhh-ccCCCCEEEccCCCCCC---ccccCCCCcCCE
Q 002432          230 QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSID-LLVNLQTLCLDYSTLGD---ITIIGKLKNLEI  305 (922)
Q Consensus       230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~---p~~i~~L~~L~~  305 (922)
                      +...+|++.|...   .++.  |.+++.|..|.+.+|.|..+-..+. -+++|.+|.|.+|+|.+   ..-+..++.|++
T Consensus        43 ~~d~iDLtdNdl~---~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR---KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccceecccccchh---hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            3445555555433   2222  4566666666666666666644343 34456666666666654   344555666777


Q ss_pred             EEeecCCCcccch----hhcCCCCCCEEeccCC
Q 002432          306 LSLIESDIVEFPE----ELGKLTKLRLLDLTNC  334 (922)
Q Consensus       306 L~L~~~~l~~lp~----~i~~L~~L~~L~l~~~  334 (922)
                      |.+-+|.++....    -+.++++|++||..+.
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            7776666554332    3566777777776653

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.38  E-value=9.9e-06  Score=93.35  Aligned_cols=122  Identities=16%  Similarity=0.178  Sum_probs=76.8

Q ss_pred             CcceeEEeeccccCccccccccccccccCCcEEEEecC-CCceEeecCcccccCcccccccccccccccccccccccccc
Q 002432          468 IRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNN-PDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLS  546 (922)
Q Consensus       468 ~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~-~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  546 (922)
                      .++|+.|.+.++....+..........++|+.|++.++ ......+ ..........++|+.|.++.+..+.+...... 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l-  264 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP-LLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL-  264 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch-hHhhhhhhhcCCcCccchhhhhccCchhHHHH-
Confidence            47788888888776665221112256889999999873 2221111 00111234457888888888886554422211 


Q ss_pred             cccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccch
Q 002432          547 TESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMK  591 (922)
Q Consensus       547 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~  591 (922)
                      ...+++|+.|.+.+|..++..........+++|++|++++|..++
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~  309 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT  309 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence            122678999998888876655444556678889999999988763

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.34  E-value=0.00011  Score=74.47  Aligned_cols=129  Identities=18%  Similarity=0.162  Sum_probs=62.3

Q ss_pred             CcceEEEeecCCCCCCCCC-----C-CCCCccEEEccCCCCcCCCC-CChHHhhCCCCCcEEEeeCCcCc-----cCchh
Q 002432          207 KKCYAISWIDSSGGELPEG-----L-ECPQLELLLLSSEHSSVDVN-IPQRFFTGMRELKVVDLTNMQLF-----SLPSS  274 (922)
Q Consensus       207 ~~l~~L~l~~~~~~~l~~~-----~-~~~~Lr~L~l~~~~~~~~~~-l~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~  274 (922)
                      ..+|++....|++..-+..     + ..+.|+.+.+..|.+...|. .....|..+++|++|||..|.++     .+-+.
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            4567777776666443321     1 23455666665555432221 22223455666666666666554     23344


Q ss_pred             hhccCCCCEEEccCCCCCC--c----ccc-CCCCcCCEEEeecCCCcc-----cchhhcCCCCCCEEeccCCC
Q 002432          275 IDLLVNLQTLCLDYSTLGD--I----TII-GKLKNLEILSLIESDIVE-----FPEELGKLTKLRLLDLTNCF  335 (922)
Q Consensus       275 i~~L~~L~~L~L~~~~l~~--p----~~i-~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~  335 (922)
                      ++.+++||.|++++|.++.  -    ..+ ...++|++|.+.+|.++.     +-..+...+.|+.|++++|.
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            5555566666666665543  1    111 124555555555554441     12223344445555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.30  E-value=5.5e-05  Score=74.65  Aligned_cols=60  Identities=28%  Similarity=0.392  Sum_probs=34.0

Q ss_pred             CCCCCcEEEeeCCcCcc---CchhhhccCCCCEEEccCCCCCC-cccc-CCCCcCCEEEeecCCC
Q 002432          254 GMRELKVVDLTNMQLFS---LPSSIDLLVNLQTLCLDYSTLGD-ITII-GKLKNLEILSLIESDI  313 (922)
Q Consensus       254 ~l~~Lr~L~L~~~~i~~---lp~~i~~L~~L~~L~L~~~~l~~-p~~i-~~L~~L~~L~L~~~~l  313 (922)
                      ...+++.|||.+|.|+.   +-.-+.++++|++|+|+.|++.. +.+. ..+.+|++|-|.|+.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL  133 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence            34566666666666652   22334456666666666666554 3444 3556666666666544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.75  E-value=0.00054  Score=67.86  Aligned_cols=40  Identities=28%  Similarity=0.504  Sum_probs=25.2

Q ss_pred             hCCCCCCCEEEccCCccc-ccccccCCcccccccCcccCCCCCCCCEEEeeecC
Q 002432          345 IASFTRLEELYMSNCFVE-WKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEN  397 (922)
Q Consensus       345 l~~L~~L~~L~L~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  397 (922)
                      ...++.+--|+|+.+++. |             +.+.++..+++|+.|.+..+.
T Consensus       220 se~~p~~~~LnL~~~~idsw-------------asvD~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  220 SEPFPSLSCLNLGANNIDSW-------------ASVDALNGFPQLVDLRVSENP  260 (418)
T ss_pred             CCCCCcchhhhhcccccccH-------------HHHHHHcCCchhheeeccCCc
Confidence            344555666666665543 2             456677777778777777665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.26  E-value=0.0021  Score=63.19  Aligned_cols=82  Identities=22%  Similarity=0.320  Sum_probs=42.0

Q ss_pred             hCCCCCcEEEeeCC--cCc-cCchhhhccCCCCEEEccCCCCCC---ccccCCCCcCCEEEeecCCCcccc----hhhcC
Q 002432          253 TGMRELKVVDLTNM--QLF-SLPSSIDLLVNLQTLCLDYSTLGD---ITIIGKLKNLEILSLIESDIVEFP----EELGK  322 (922)
Q Consensus       253 ~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~l~~---p~~i~~L~~L~~L~L~~~~l~~lp----~~i~~  322 (922)
                      ..+++|+.|.++.|  .+. .++...-++++|++|++++|+|..   .....++.+|..||+..|..+.+-    ..+.-
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l  141 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL  141 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence            34455555555555  222 233333344555666665555443   233445555666666666544331    12455


Q ss_pred             CCCCCEEeccCC
Q 002432          323 LTKLRLLDLTNC  334 (922)
Q Consensus       323 L~~L~~L~l~~~  334 (922)
                      +++|.+|+-...
T Consensus       142 l~~L~~LD~~dv  153 (260)
T KOG2739|consen  142 LPSLKYLDGCDV  153 (260)
T ss_pred             hhhhcccccccc
Confidence            667777765554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.19  E-value=0.00018  Score=70.43  Aligned_cols=80  Identities=25%  Similarity=0.325  Sum_probs=39.1

Q ss_pred             CCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCc-chhCCCCCCCEEEccC
Q 002432          280 NLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAP-NVIASFTRLEELYMSN  358 (922)
Q Consensus       280 ~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~l~~L~~L~~L~L~~  358 (922)
                      +.+-|+..+|.+.++....+++.|++|.|+-|+|+.+- .+..+++|++|+|..|. +.++.+ ..+.++++|+.|.|..
T Consensus        20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhcc
Confidence            34444455555544444445555555555555555542 24555555555555543 433322 1244555555555555


Q ss_pred             Ccc
Q 002432          359 CFV  361 (922)
Q Consensus       359 ~~~  361 (922)
                      |.-
T Consensus        98 NPC  100 (388)
T KOG2123|consen   98 NPC  100 (388)
T ss_pred             CCc
Confidence            443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.14  E-value=0.0022  Score=63.01  Aligned_cols=101  Identities=26%  Similarity=0.371  Sum_probs=64.1

Q ss_pred             hCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCC--CCCC--ccccCCCCcCCEEEeecCCCcccc--hhhcCCCCC
Q 002432          253 TGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYS--TLGD--ITIIGKLKNLEILSLIESDIVEFP--EELGKLTKL  326 (922)
Q Consensus       253 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~--~l~~--p~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L  326 (922)
                      ..+..|..|++.+..++.+ ..+..|++|++|+++.|  .+..  +....++++|++|++++|+++.+.  .....+.+|
T Consensus        40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            3445556666655555443 23556778888888888  4443  344556688888888888776331  246777888


Q ss_pred             CEEeccCCCCCCccC---cchhCCCCCCCEEE
Q 002432          327 RLLDLTNCFHLKVIA---PNVIASFTRLEELY  355 (922)
Q Consensus       327 ~~L~l~~~~~l~~~p---~~~l~~L~~L~~L~  355 (922)
                      ..|++.+|. ...+.   ...+.-+++|..|+
T Consensus       119 ~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  119 KSLDLFNCS-VTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhhcccCC-ccccccHHHHHHHHhhhhcccc
Confidence            888888875 33332   22345577777776

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.67  E-value=0.00082  Score=65.99  Aligned_cols=78  Identities=21%  Similarity=0.206  Sum_probs=42.2

Q ss_pred             CCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC---ccccCCCCcCC
Q 002432          228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD---ITIIGKLKNLE  304 (922)
Q Consensus       228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~---p~~i~~L~~L~  304 (922)
                      +.+.+.|++.|+...   +|  ++..+|+.|.||.|+-|+|+.+. .+..|++|+.|.|+.|.|..   ..-+.+|++|+
T Consensus        18 l~~vkKLNcwg~~L~---DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD---DI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCcc---HH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            445566666666443   22  23456666777777766666652 25555666666666655544   23344444444


Q ss_pred             EEEeecC
Q 002432          305 ILSLIES  311 (922)
Q Consensus       305 ~L~L~~~  311 (922)
                      +|-|..|
T Consensus        92 ~LWL~EN   98 (388)
T KOG2123|consen   92 TLWLDEN   98 (388)
T ss_pred             hHhhccC
Confidence            4444433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.66  E-value=0.028  Score=51.04  Aligned_cols=100  Identities=18%  Similarity=0.309  Sum_probs=33.9

Q ss_pred             CCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccch-hhc
Q 002432          246 NIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPE-ELG  321 (922)
Q Consensus       246 ~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~-~i~  321 (922)
                      .++...|..+..|+.+.+.++ +..++. .+.++..|+.+.+.. .+..  ...|..+.+|+.+++..+ +..++. .+.
T Consensus        25 ~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~  101 (129)
T PF13306_consen   25 KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFS  101 (129)
T ss_dssp             EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTT
T ss_pred             EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhc
Confidence            344444555555555555443 444432 344444555555533 2222  234444555555555432 333322 234


Q ss_pred             CCCCCCEEeccCCCCCCccCcchhCCCCCC
Q 002432          322 KLTKLRLLDLTNCFHLKVIAPNVIASFTRL  351 (922)
Q Consensus       322 ~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L  351 (922)
                      +. +|+.+.+..  .+..++...|.+.++|
T Consensus       102 ~~-~l~~i~~~~--~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  102 NC-NLKEINIPS--NITKIEENAFKNCTKL  128 (129)
T ss_dssp             T--T--EEE-TT--B-SS----GGG-----
T ss_pred             CC-CceEEEECC--CccEECCccccccccC
Confidence            43 555554443  2344444444444433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.66  E-value=0.0044  Score=36.03  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=12.6

Q ss_pred             cCCEEEeecCCCcccchhhcC
Q 002432          302 NLEILSLIESDIVEFPEELGK  322 (922)
Q Consensus       302 ~L~~L~L~~~~l~~lp~~i~~  322 (922)
                      +|++||+++|+++.+|.+|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            456666666666666655544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.62  E-value=0.01  Score=58.31  Aligned_cols=87  Identities=30%  Similarity=0.295  Sum_probs=44.3

Q ss_pred             CCCCCcEEEeeCCcCc-----cCchhhhccCCCCEEEccCCCCC---C--c-------cccCCCCcCCEEEeecCCCc-c
Q 002432          254 GMRELKVVDLTNMQLF-----SLPSSIDLLVNLQTLCLDYSTLG---D--I-------TIIGKLKNLEILSLIESDIV-E  315 (922)
Q Consensus       254 ~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~---~--p-------~~i~~L~~L~~L~L~~~~l~-~  315 (922)
                      .+..+..++||+|.|.     .+...|.+-.+|++.+++.-...   +  +       ..+-++++|+..+|+.|.+. .
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            3556666666666654     23334455556666665543211   1  1       23445666666666666433 2


Q ss_pred             cc----hhhcCCCCCCEEeccCCCCCCccC
Q 002432          316 FP----EELGKLTKLRLLDLTNCFHLKVIA  341 (922)
Q Consensus       316 lp----~~i~~L~~L~~L~l~~~~~l~~~p  341 (922)
                      .|    +-|.+-+.|.+|.+.+|. ++.+.
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~a  136 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNG-LGPIA  136 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCC-CCccc
Confidence            22    234555666666666653 44443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.55  E-value=0.0054  Score=35.64  Aligned_cols=21  Identities=38%  Similarity=0.528  Sum_probs=15.5

Q ss_pred             CCcEEEeeCCcCccCchhhhc
Q 002432          257 ELKVVDLTNMQLFSLPSSIDL  277 (922)
Q Consensus       257 ~Lr~L~L~~~~i~~lp~~i~~  277 (922)
                      +|++||+++|+++.+|++|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            467888888887777776654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.35  E-value=0.036  Score=50.30  Aligned_cols=107  Identities=14%  Similarity=0.282  Sum_probs=64.9

Q ss_pred             CCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccch-hhc
Q 002432          246 NIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPE-ELG  321 (922)
Q Consensus       246 ~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~-~i~  321 (922)
                      .+++..|.+..+|+.+.+.. .+..++. .|..+.+|+.+.+..+ +..  -..|..+.+|+.+.+.. .+..++. .+.
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~   78 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS   78 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred             EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence            35666788888999999875 5677754 6788888999998774 666  36688888899998865 5555544 467


Q ss_pred             CCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccC
Q 002432          322 KLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN  358 (922)
Q Consensus       322 ~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~  358 (922)
                      ++++|+.+++..+  +..++...+.+. +|+.+.+..
T Consensus        79 ~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   79 NCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             T-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            7888888888663  667777767776 888887654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.44  E-value=0.047  Score=29.33  Aligned_cols=16  Identities=31%  Similarity=0.592  Sum_probs=6.1

Q ss_pred             cCCEEEeecCCCcccc
Q 002432          302 NLEILSLIESDIVEFP  317 (922)
Q Consensus       302 ~L~~L~L~~~~l~~lp  317 (922)
                      +|++|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555544443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.14  E-value=0.021  Score=54.03  Aligned_cols=40  Identities=18%  Similarity=0.227  Sum_probs=28.9

Q ss_pred             ccCccEEEeccCcCccccccHHHHhhhccccEEEEeccccc
Q 002432          677 FQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGL  717 (922)
Q Consensus       677 l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l  717 (922)
                      .++|+.|+|++|+++++- ....+..+++|+.|.|.+.+.+
T Consensus       150 ~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             ccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhh
Confidence            578888888888888763 3455677778888877775444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.06  E-value=0.016  Score=54.80  Aligned_cols=70  Identities=19%  Similarity=0.299  Sum_probs=48.6

Q ss_pred             CcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccch
Q 002432          520 CDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMK  591 (922)
Q Consensus       520 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~  591 (922)
                      ...++.++.|.+.+|..+.+|+.+.+.. -.++|+.|+|++|+++++- ....+..+++|+.|.+.+.+.+.
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhh
Confidence            3345667778888888887776554433 5788888888888888765 33455667788888887765443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.67  E-value=0.073  Score=28.59  Aligned_cols=16  Identities=50%  Similarity=0.798  Sum_probs=7.0

Q ss_pred             CCcEEEeeCCcCccCc
Q 002432          257 ELKVVDLTNMQLFSLP  272 (922)
Q Consensus       257 ~Lr~L~L~~~~i~~lp  272 (922)
                      +||+|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666655544

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.03  E-value=0.004  Score=59.63  Aligned_cols=82  Identities=13%  Similarity=0.137  Sum_probs=41.6

Q ss_pred             hCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEec
Q 002432          253 TGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDL  331 (922)
Q Consensus       253 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l  331 (922)
                      ..++.-++||++.|....+-..++.+..|.-|+++.|.+.. |.+++.+..++++++..|+.+..|.++++++++++++.
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            44555555555555554444444444555555555544444 44555555555555555544555555555555555544


Q ss_pred             cCC
Q 002432          332 TNC  334 (922)
Q Consensus       332 ~~~  334 (922)
                      .++
T Consensus       119 k~~  121 (326)
T KOG0473|consen  119 KKT  121 (326)
T ss_pred             ccC
Confidence            443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=90.92  E-value=2.2  Score=53.46  Aligned_cols=150  Identities=16%  Similarity=0.189  Sum_probs=94.6

Q ss_pred             eEeCC----CCCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHHHHHHHhcCCCCC
Q 002432            6 NFSIE----ILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTEN   81 (922)
Q Consensus         6 ~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~~~l~~~~~~~~~   81 (922)
                      ..++.    +++.+|+.++|....+..-.    .+...+|.+.|+|.|+++..++..++......  ......+.    .
T Consensus       176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~----~  245 (903)
T PRK04841        176 LLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRLA----G  245 (903)
T ss_pred             ceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhc----C
Confidence            44555    89999999999987754321    34567899999999999999888776542110  11111111    0


Q ss_pred             CCccchHHHHHHHHH-HHhcCCchhHHHHHhhccccCCCchhHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHhhcce
Q 002432           82 NFHRELGKAYTAIKL-SYDALKGEQLKKIFQLCSLMPKSFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCLL  160 (922)
Q Consensus        82 ~~~~~~~~~~~~l~l-sY~~L~~~~lk~cfly~~~f~~~~~~~~Li~~WiaeG~i~~~~~e~~~~~~~~~i~~L~~~~l~  160 (922)
                      .+.   ..+...+.- .|+.||++ .+..+...|+++.+.  .++...     +...   +++    .+.+.+|.+.++|
T Consensus       246 ~~~---~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~~~~--~~l~~~-----l~~~---~~~----~~~L~~l~~~~l~  307 (903)
T PRK04841        246 INA---SHLSDYLVEEVLDNVDLE-TRHFLLRCSVLRSMN--DALIVR-----VTGE---ENG----QMRLEELERQGLF  307 (903)
T ss_pred             CCc---hhHHHHHHHHHHhcCCHH-HHHHHHHhcccccCC--HHHHHH-----HcCC---CcH----HHHHHHHHHCCCe
Confidence            001   124444333 37899998 899999999996333  233221     1111   122    2348888888886


Q ss_pred             e-ccc-ccceEEecHHHHHHHHHHH
Q 002432          161 L-EGY-SCREFSMHDVVHDVAILIA  183 (922)
Q Consensus       161 ~-~~~-~~~~~~mhdli~dl~~~~~  183 (922)
                      . ..+ +..+|..|++++++.....
T Consensus       308 ~~~~~~~~~~yr~H~L~r~~l~~~l  332 (903)
T PRK04841        308 IQRMDDSGEWFRYHPLFASFLRHRC  332 (903)
T ss_pred             eEeecCCCCEEehhHHHHHHHHHHH
Confidence            4 332 3357899999999987664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.79  E-value=0.0085  Score=57.48  Aligned_cols=84  Identities=15%  Similarity=0.109  Sum_probs=68.5

Q ss_pred             CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCE
Q 002432          227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEI  305 (922)
Q Consensus       227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~  305 (922)
                      .+...++||++.|...   .+-.. |+.+..|..||++.|.+..+|..++.+..++.+++..|..+. |.++++++++++
T Consensus        40 ~~kr~tvld~~s~r~v---n~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV---NLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK  115 (326)
T ss_pred             ccceeeeehhhhhHHH---hhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence            6678888898888643   23333 467788888999999999999999998999999999888887 899999999999


Q ss_pred             EEeecCCCc
Q 002432          306 LSLIESDIV  314 (922)
Q Consensus       306 L~L~~~~l~  314 (922)
                      +++.+|.+.
T Consensus       116 ~e~k~~~~~  124 (326)
T KOG0473|consen  116 NEQKKTEFF  124 (326)
T ss_pred             hhhccCcch
Confidence            999888655

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.06  E-value=0.32  Score=29.50  Aligned_cols=19  Identities=26%  Similarity=0.433  Sum_probs=11.1

Q ss_pred             CcCCEEEeecCCCcccchh
Q 002432          301 KNLEILSLIESDIVEFPEE  319 (922)
Q Consensus       301 ~~L~~L~L~~~~l~~lp~~  319 (922)
                      ++|++|++++|+++.+|.+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4556666666666655554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.06  E-value=0.32  Score=29.50  Aligned_cols=19  Identities=26%  Similarity=0.433  Sum_probs=11.1

Q ss_pred             CcCCEEEeecCCCcccchh
Q 002432          301 KNLEILSLIESDIVEFPEE  319 (922)
Q Consensus       301 ~~L~~L~L~~~~l~~lp~~  319 (922)
                      ++|++|++++|+++.+|.+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4556666666666655554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=88.53  E-value=1.1  Score=44.58  Aligned_cols=133  Identities=19%  Similarity=0.304  Sum_probs=72.3

Q ss_pred             CCCCccEEEccCCCCcCCCCCC---hHHhhCCCCCcEEEeeCCcCccCch-hh-------------hccCCCCEEEccCC
Q 002432          227 ECPQLELLLLSSEHSSVDVNIP---QRFFTGMRELKVVDLTNMQLFSLPS-SI-------------DLLVNLQTLCLDYS  289 (922)
Q Consensus       227 ~~~~Lr~L~l~~~~~~~~~~l~---~~~~~~l~~Lr~L~L~~~~i~~lp~-~i-------------~~L~~L~~L~L~~~  289 (922)
                      +|++|+..+++.|.+..  ..|   .+++++-..|..|.+++|.+..+.. .|             .+-+.|++.+...|
T Consensus        90 kcp~l~~v~LSDNAfg~--~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          90 KCPRLQKVDLSDNAFGS--EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             cCCcceeeeccccccCc--ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            67777777777776543  222   2334666777777777776543211 12             23355777777777


Q ss_pred             CCCC-c-----cccCCCCcCCEEEeecCCCcc-----c-chhhcCCCCCCEEeccCCCCCCccCc----chhCCCCCCCE
Q 002432          290 TLGD-I-----TIIGKLKNLEILSLIESDIVE-----F-PEELGKLTKLRLLDLTNCFHLKVIAP----NVIASFTRLEE  353 (922)
Q Consensus       290 ~l~~-p-----~~i~~L~~L~~L~L~~~~l~~-----l-p~~i~~L~~L~~L~l~~~~~l~~~p~----~~l~~L~~L~~  353 (922)
                      ++.. +     ..+..-.+|+++.+..|.|..     + -.+...+.+|++||+..|. ++....    .++..-+.|++
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhh
Confidence            7654 3     123333567777777665541     1 1234556677777777664 332211    12344455666


Q ss_pred             EEccCCccc
Q 002432          354 LYMSNCFVE  362 (922)
Q Consensus       354 L~L~~~~~~  362 (922)
                      |.+.+|-+.
T Consensus       247 L~lnDClls  255 (388)
T COG5238         247 LRLNDCLLS  255 (388)
T ss_pred             ccccchhhc
Confidence            666666544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.81  E-value=0.67  Score=28.09  Aligned_cols=20  Identities=45%  Similarity=0.662  Sum_probs=13.8

Q ss_pred             CCCCcEEEeeCCcCccCchh
Q 002432          255 MRELKVVDLTNMQLFSLPSS  274 (922)
Q Consensus       255 l~~Lr~L~L~~~~i~~lp~~  274 (922)
                      +.+|++|+|++|.++.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777777654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.81  E-value=0.67  Score=28.09  Aligned_cols=20  Identities=45%  Similarity=0.662  Sum_probs=13.8

Q ss_pred             CCCCcEEEeeCCcCccCchh
Q 002432          255 MRELKVVDLTNMQLFSLPSS  274 (922)
Q Consensus       255 l~~Lr~L~L~~~~i~~lp~~  274 (922)
                      +.+|++|+|++|.++.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	922
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-24
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	5e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-05
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score =  107 bits (269), Expect = 2e-24
 Identities = 25/200 (12%), Positives = 58/200 (29%), Gaps = 10/200 (5%)

Query: 1   MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALR 60
             +     +  L  +E +   E       +  + +      ++   G P  +    K+  
Sbjct: 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCE 341

Query: 61  NKTESECWKNALHELRMPTENNFHRELGKAY----TAIKLSYDALKGEQLKKIFQLCSLM 116
            KT  +      ++L              +Y     A++   + L  E  +       +M
Sbjct: 342 PKTFEK-MAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDE-DRSALAFAVVM 399

Query: 117 PKSF-FASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCLLLEG--YSCREFSMHD 173
           P        L+   I + I    + E   +++   +  L     LL G       F +  
Sbjct: 400 PPGVDIPVKLWSCVIPVDIC-SNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDH 458

Query: 174 VVHDVAILIACGEQKEFLVR 193
           ++H     +   +     + 
Sbjct: 459 IIHMFLKHVVDAQTIANGIS 478

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 81.4 bits (201), Expect = 5e-16
 Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 20/183 (10%)

Query: 10  EILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKT-ESECW 68
             L +E+   +  + +        +   A  I+KEC G P+ +  I   LR+     E +
Sbjct: 284 SSLGKEKGLEILSLFVNMKK--ADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYY 341

Query: 69  KNALH-ELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPK--SFFASDL 125
              L  +       +   +      A+ +S + L+ E +K  +   S++ K        L
Sbjct: 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVL 400

Query: 126 FKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCLLL--EGYSCREFSMHDVVHDVAILIA 183
                        ++ED       ++ E  +  LL          + +HD+  D      
Sbjct: 401 CILWDM----ETEEVED-------ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449

Query: 184 CGE 186
           C +
Sbjct: 450 CSQ 452

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.3 bits (183), Expect = 9e-14
 Identities = 107/636 (16%), Positives = 203/636 (31%), Gaps = 122/636 (19%)

Query: 246 NIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYSTLGDI--TIIGKLKN 302
            +P   FT   +L  +D+    +  L P     L  L+ L L ++ L  +         N
Sbjct: 39  RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98

Query: 303 LEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC-F 360
           L  L L+ + I +       K   L  LDL++   L             L+EL +SN   
Sbjct: 99  LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKI 157

Query: 361 VEWKVEDEGSSSKKSKASLD------------ELMPLPRLTTLEIAVENDNAL----PEG 404
              K E+    +  S   L+                + RL  L +   N+  L     E 
Sbjct: 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL---NNVQLGPSLTEK 214

Query: 405 FFVR-ELERFKIL-IGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLN-WKTIC 461
             +       + L + +                S + FL L   +L ML L  N    + 
Sbjct: 215 LCLELANTSIRNLSLSNSQLS----------TTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 462 LRKLQGIRKVEYLCLD--KFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVD 519
                 + ++EY  L+    Q + +        G   +++L ++ +     I  +     
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSL----HGLFNVRYLNLKRSFTKQSISLAS---- 316

Query: 520 CDAFPLLELLSLQNLINLKRICVDR-----LSTESFSELRTMKV----ENCDELSNIFVL 570
               P ++  S Q L  L+ + ++      + +  F+ L  +K      +   L  +   
Sbjct: 317 ---LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNE 373

Query: 571 S-TTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFA------QIRYLSL 623
           +  +     L  + + K         I   E D       +E ++        ++     
Sbjct: 374 TFVSLAHSPLHILNLTKNK-------ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426

Query: 624 GNLPELKSF---CCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRL 680
             L  +        +     +  + F     +P+L+ L L  + +K++  +  P  FQ L
Sbjct: 427 RGLENIFEIYLSYNKYLQ--LTRNSFAL---VPSLQRLMLRRVALKNVDSS--PSPFQPL 479

Query: 681 TRLIVWGCQKLKF------MFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFA 734
             L       L             M++ LE+L+ L++++   L  +     PG       
Sbjct: 480 RNL-----TILDLSNNNIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLK 533

Query: 735 FRRVTNISLCHLPELTCLY------PGLHTSEWPELKKLEV--FSCDKLNTFASESFSFH 786
                      L  L  L         +    + +L +L++     + LNT  +  F+  
Sbjct: 534 ----------GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583

Query: 787 SNEKK------QLHVPKQPFFSFEKIFPNLEELGLS 816
            + K        +         F   F NL EL + 
Sbjct: 584 VSLKSLNLQKNLITSV--EKKVFGPAFRNLTELDMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.3 bits (165), Expect = 1e-11
 Identities = 122/703 (17%), Positives = 229/703 (32%), Gaps = 184/703 (26%)

Query: 257 ELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI--TIIGKLKNLEILSLIESDIV 314
             +V D ++++L  +P   DL  N+  L L ++ L  +      +   L  L +  + I 
Sbjct: 5   SHEVADCSHLKLTQVPD--DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 315 EF-PEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSK 373
           +  PE   KL  L++L+L +   L  ++    A  T L EL++ +  +            
Sbjct: 63  KLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSI------------ 109

Query: 374 KSKASLDELMPLPRLTTLEIAVENDNAL---PEGFFVRELERFKILIGDRSFEPPVILSK 430
             K   +  +    L TL+++    N L     G    +LE  + L          +LS 
Sbjct: 110 -QKIKNNPFVKQKNLITLDLS---HNGLSSTKLGTQ-VQLENLQEL----------LLSN 154

Query: 431 DWFR-ISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFEL 489
           +  + +      I  + SL+ L+L  N                     + +      F  
Sbjct: 155 NKIQALKSEELDIFANSSLKKLELSSN---------------------QIKEFSPGCF-- 191

Query: 490 DTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTES 549
                 +L  L + N      + +            L   S++NL +L    +   S  +
Sbjct: 192 --HAIGRLFGLFLNNVQLGPSLTEK-------LCLELANTSIRNL-SLSNSQLSTTSNTT 241

Query: 550 FSELRTMKVENCDELSN--IFVLSTT--KCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVD 605
           F  L+   +   D LS   + V+       LP L+    ++ N ++ +F           
Sbjct: 242 FLGLKWTNLTMLD-LSYNNLNVVGNDSFAWLPQLEYF-FLEYNNIQHLF----------- 288

Query: 606 NNNAIENIEFAQIRYLSL-GNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEIN 664
            ++++  +    +RYL+L  +  +       +  P +    F     L  LE L +    
Sbjct: 289 -SHSLHGLF--NVRYLNLKRSFTKQSISLASL--PKIDDFSFQW---LKCLEHLNM---- 336

Query: 665 VKSIWHNQ----TPCCFQRLTRLIV-------WGCQKLKFMFYASMIKSLEQLQHLEIRN 713
                 N         F  L  L            + L    + S+  S   L  L +  
Sbjct: 337 ----EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS--PLHILNLTK 390

Query: 714 CTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLY-------PGLHTSEWPELKK 766
              +  I S+                  +   L  L  L          L   EW  L+ 
Sbjct: 391 N-KISKIESD------------------AFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN 431

Query: 767 LEV--FSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLS---IKDIM 821
           +     S +K       SF+                       P+L+ L L    +K++ 
Sbjct: 432 IFEIYLSYNKYLQLTRNSFAL---------------------VPSLQRLMLRRVALKNVD 470

Query: 822 MLLQGDFPQDHLFGSLKDLEVRDDDS---ASVPIGLLEKFHGLENLNLSFCSYKELFSNG 878
                       F  L++L + D  +   A++   +LE    LE L+L   +   L+ + 
Sbjct: 471 SSP-------SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523

Query: 879 GQVHLIKKLELICLNDLEYLWIPN---SKMGDSILQNLEILKT 918
                I  L+   L+ L  L + +    ++   + ++L  LK 
Sbjct: 524 NPGGPIYFLK--GLSHLHILNLESNGFDEIPVEVFKDLFELKI 564

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 3e-08
 Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 14/146 (9%)

Query: 228 CPQLELLLLSSEHSSVDV------NIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVN 280
              +  L L    +   +       I    F  ++ L+ +++ +  +  +  +    L+N
Sbjct: 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN 354

Query: 281 LQTLCLDYSTLGDITIIGK------LKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTN 333
           L+ L L  S     T+  +         L IL+L ++ I +   +    L  L +LDL  
Sbjct: 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414

Query: 334 CFHLKVIAPNVIASFTRLEELYMSNC 359
               + +          + E+Y+S  
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYN 440

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.5 bits (176), Expect = 2e-13
 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 13/143 (9%)

Query: 221 ELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLL- 278
              + L +  +      +  HS+                ++   T   L +    ++   
Sbjct: 27  PYHDVLSQWQRHYNADRNRWHSAWR-------QANSNNPQIETRTGRALKATADLLEDAT 79

Query: 279 -VNLQTLCLDYSTLGDI-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFH 336
                 L L    L        +L +L+ +++  + ++E P+ + +   L  L L     
Sbjct: 80  QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-P 138

Query: 337 LKVIAPNVIASFTRLEELYMSNC 359
           L+ + P  IAS  RL EL +  C
Sbjct: 139 LRAL-PASIASLNRLRELSIRAC 160

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.5 bits (176), Expect = 2e-13
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 4/109 (3%)

Query: 255 MRELKVVDLTNMQLFSLPSSIDLLVNLQTLCL-DYSTLGDI-TIIGKLKNLEILSLIE-S 311
           ++ LK + + N  L +L  +I  L  L+ L L   + L +   I G    L+ L L + S
Sbjct: 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 312 DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCF 360
           +++  P ++ +LT+L  LDL  C +L  + P++IA       + +    
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRL-PSLIAQLPANCIILVPPHL 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.0 bits (172), Expect = 6e-13
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 270 SLPSSIDLLVNLQTLCLDYSTLGDI-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRL 328
                   LVNLQ+L L+++ +  +   I  L+NL+ L +  S +      +  L KL  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233

Query: 329 LDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359
           LDL  C  L+   P +      L+ L + +C
Sbjct: 234 LDLRGCTALRNY-PPIFGGRAPLKRLILKDC 263

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.6 bits (176), Expect = 5e-13
 Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 5/162 (3%)

Query: 202 DEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVV 261
               LK    +++  + GG     ++ P LE L LS    S      Q  F G   LK +
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYL 378

Query: 262 DLTNMQLFSLPSSIDLLVNLQTLCLDY---STLGDITIIGKLKNLEILSLIESDI-VEFP 317
           DL+   + ++ S+   L  L+ L   +     + + ++   L+NL  L +  +   V F 
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 318 EELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359
                L+ L +L +      +   P++      L  L +S C
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.4 bits (152), Expect = 4e-10
 Identities = 69/492 (14%), Positives = 151/492 (30%), Gaps = 89/492 (18%)

Query: 259 KVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI--TIIGKLKNLEILSLIESDI-VE 315
                  +  + +P   +L  + + L L ++ L  +          L++L L   +I   
Sbjct: 10  ITYQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 316 FPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKS 375
                  L+ L  L LT    ++ +A    +  + L++L      +             +
Sbjct: 68  EDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNL-------------A 113

Query: 376 KASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRI 435
                 +  L  L  L +A     +     +   L   + L                  +
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL-----------------DL 156

Query: 436 SRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFS 495
           S +    +    LR+           L ++  +     L L+    ++   F+       
Sbjct: 157 SSNKIQSIYCTDLRV-----------LHQMPLLNLSLDLSLNPMNFIQPGAFKE-----I 200

Query: 496 QLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRT 555
           +L  L ++NN D L ++ +           LE+  L          +++    +   L  
Sbjct: 201 RLHKLTLRNNFDSLNVMKTC----IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 556 MKVENCD----ELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEP----DVVDNN 607
           + +E       +     ++    CL ++     +    ++ +            ++V+  
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF-SLVSVTIERVKDFSYNFGWQHLELVNCK 315

Query: 608 -NAIENIEFAQIRYL-----------SLGNLPELK----SFCCEVKGPSMPPSLFNGKVV 651
                 ++   ++ L           S  +LP L+    S            S F     
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG---- 371

Query: 652 LPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEI 711
             +L+ L+L    V ++  N      ++L  L       LK M   S+  SL  L +L+I
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGL--EQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDI 428

Query: 712 RNCTGLQVIISE 723
            +    +V  + 
Sbjct: 429 SHT-HTRVAFNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 4e-08
 Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 13/142 (9%)

Query: 228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCL 286
            P+L++L LS         I    +  +  L  + LT   + SL   +   L +LQ L  
Sbjct: 51  FPELQVLDLSRCEIQT---IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 287 DYSTLGDI--TIIGKLKNLEILSLIESDI--VEFPEELGKLTKLRLLDLTNCFHLKVIAP 342
             + L  +    IG LK L+ L++  + I   + PE    LT L  LDL++   ++ I  
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYC 166

Query: 343 NVIASFTRLE----ELYMSNCF 360
             +    ++      L +S   
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNP 188

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 11/143 (7%)

Query: 221 ELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVN 280
            + +       + L L +         P      ++ L     T+ +  +  S +DL  +
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFG---QFPTLKLKSLKRL---TFTSNKGGNAFSEVDL-PS 348

Query: 281 LQTLCLDYSTLGDITII----GKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFH 336
           L+ L L  + L              +L+ L L  + ++        L +L  LD  +   
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408

Query: 337 LKVIAPNVIASFTRLEELYMSNC 359
            ++   +V  S   L  L +S+ 
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHT 431

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 29/163 (17%), Positives = 50/163 (30%), Gaps = 35/163 (21%)

Query: 228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCL 286
              L  L+L+   + +  ++    F+G+  L+ +      L SL    I  L  L+ L +
Sbjct: 75  LSHLSTLILT--GNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 287 DYSTLGDITI---IGKLKNLEILSL--------IESD--------------------IVE 315
            ++ +    +      L NLE L L          +D                    +  
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 316 FPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
                 K  +L  L L N F    +    I     LE   +  
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 71.7 bits (176), Expect = 6e-13
 Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 7/145 (4%)

Query: 220 GELPEGLECPQLELLLLSS-EHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLL 278
           G     ++ P LE L LS    S        +   G   LK +DL+   + ++ S+   L
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKG--CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 279 VNLQTLCLDY---STLGDITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNC 334
             L+ L   +     + + ++   L+NL  L +  +            L+ L +L +   
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 335 FHLKVIAPNVIASFTRLEELYMSNC 359
              +   P++      L  L +S C
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQC 480

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 71.7 bits (176), Expect = 6e-13
 Identities = 70/503 (13%), Positives = 144/503 (28%), Gaps = 85/503 (16%)

Query: 259 KVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI--TIIGKLKNLEILSLIESDIVEF 316
                  +  + +P   +L  + + L L ++ L  +          L++L L   +I   
Sbjct: 10  ITYQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 317 PEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKS 375
            +     L+ L  L LT    ++ +A    +  + L++L      +             +
Sbjct: 68  EDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNL-------------A 113

Query: 376 KASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKIL---------IGDRSFEPPV 426
                 +  L  L  L +A     +     +   L   + L         I         
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 427 ILSKDWFRISRSHFLI-------LDHQSLRMLKLKLNWKTI-----CLRKLQGIRKVEYL 474
            +      +  S   +            L  L L+ N+ ++     C++ L G+ +V  L
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL-EVHRL 232

Query: 475 CLDKFQGVKNILFELDTQGFSQLKHLLVQNN------------PDLLFIVDSREIVDCDA 522
            L +F+   N+  + D      L +L ++               DL   + +       +
Sbjct: 233 VLGEFRNEGNLE-KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 523 FPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSN-IFVLSTTKCLPSLQR 581
             +  +         + + +       F  L+   ++     SN      +   LPSL+ 
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351

Query: 582 IAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSM 641
           + +                     + N +           S      LK       G   
Sbjct: 352 LDL---------------------SRNGLSFKG---CCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 642 PPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIK 701
             S F G   L  LE L+    N+K +         + L  L +      +   +  +  
Sbjct: 388 MSSNFLG---LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRV-AFNGIFN 442

Query: 702 SLEQLQHLEIRNCTGLQVIISEG 724
            L  L+ L++      Q      
Sbjct: 443 GLSSLEVLKMAGN-SFQENFLPD 464

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.0 bits (164), Expect = 1e-11
 Identities = 92/511 (18%), Positives = 179/511 (35%), Gaps = 85/511 (16%)

Query: 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLD 287
           P+L++L LS         I    +  +  L  + LT   + SL       L +LQ L   
Sbjct: 52  PELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 288 YSTLGDI--TIIGKLKNLEILSLIESDI--VEFPEELGKLTKLRLLDLTNCFHLKVIAPN 343
            + L  +    IG LK L+ L++  + I   + PE    LT L  LDL++   ++ I   
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCT 167

Query: 344 VIASFTRLE----ELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399
            +    ++      L +S   +          +     +  E+    RL  L +    D+
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPM----------NFIQPGAFKEI----RLHKLTLRNNFDS 213

Query: 400 ALPEGFFVRELERFKIL---------------IGDRSFEPPVILSKDWFRISRSHFLILD 444
                  ++ L   ++                    + E    L+ + FR++   + + D
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273

Query: 445 HQSLRMLKLKLNWKTICLRKLQGIRKVEYLC-LDKFQGVKNILFELDTQGFSQLKHLLVQ 503
              L      ++  ++    ++ ++   Y       + V     +  T     LK L   
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 333

Query: 504 NNPDLLFIVDSREIVDCDAFPLLELLSLQ-NLINLKRICVDRLSTESFSELRTMKVENCD 562
           +N       ++   VD    P LE L L  N ++ K  C     ++S     ++K  +  
Sbjct: 334 SNK----GGNAFSEVDL---PSLEFLDLSRNGLSFKGCC-----SQSDFGTTSLKYLDLS 381

Query: 563 ELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLS 622
               I + S    L  L+ +   + + +K++      E  V  +           + YL 
Sbjct: 382 FNGVITMSSNFLGLEQLEHL-DFQHSNLKQM-----SEFSVFLSLR--------NLIYLD 427

Query: 623 LGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTR 682
           + +    +              +FNG   L +LE L++   + +  +        + LT 
Sbjct: 428 ISHTH-TRVA---------FNGIFNG---LSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 683 LIVWGCQKLKFMFYASMIKSLEQLQHLEIRN 713
           L +  CQ L+ +   +   SL  LQ L + +
Sbjct: 475 LDLSQCQ-LEQLS-PTAFNSLSSLQVLNMAS 503

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.9 bits (161), Expect = 3e-11
 Identities = 110/630 (17%), Positives = 200/630 (31%), Gaps = 134/630 (21%)

Query: 247 IPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYSTLGDI--TIIGKLKNL 303
           IP       + L   DL+   L  L S S      LQ L L    +  I       L +L
Sbjct: 22  IPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 304 EILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE 362
             L L  + I          L+ L+ L      +L  +    I     L+EL +++  + 
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLI- 136

Query: 363 WKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSF 422
                      +S    +    L  L  L+++     ++      R L +  +L      
Sbjct: 137 -----------QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLN----- 179

Query: 423 EPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTI-----CLRKLQGIRKVEYLCLD 477
              + L      ++           L  L L+ N+ ++     C++ L G+ +V  L L 
Sbjct: 180 ---LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL-EVHRLVLG 235

Query: 478 KFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINL 537
           +F+   N+  + D      L +L ++     L  +D       D F  L  +S  +L+++
Sbjct: 236 EFRNEGNLE-KFDKSALEGLCNLTIEEFR--LAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 538 KRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIG 597
               V   S       + +++     ++  F    T  L SL+R+     NK    F+  
Sbjct: 293 TIERVKDFS--YNFGWQHLEL-----VNCKFGQFPTLKLKSLKRL-TFTSNKGGNAFS-- 342

Query: 598 GEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEA 657
                          ++   + +L L            +           G     +L+ 
Sbjct: 343 --------------EVDLPSLEFLDLSR--------NGLSFKGCCSQSDFG---TTSLKY 377

Query: 658 LELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGL 717
           L+L    V ++  N      ++L  L       LK M   S+  SL  L +L+I +    
Sbjct: 378 LDLSFNGVITMSSN--FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT-HT 433

Query: 718 QVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNT 777
           +V  +                       L  L  L   +  + + E    ++F+      
Sbjct: 434 RVAFNG------------------IFNGLSSLEVLK--MAGNSFQENFLPDIFTE----- 468

Query: 778 FASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSL 837
                                          NL  L LS   +  L    F  + L  SL
Sbjct: 469 -----------------------------LRNLTFLDLSQCQLEQLSPTAF--NSL-SSL 496

Query: 838 KDLEVRDDDSASVPIGLLEKFHGLENLNLS 867
           + L +  +   SVP G+ ++   L+ + L 
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.7 bits (150), Expect = 6e-10
 Identities = 28/138 (20%), Positives = 61/138 (44%), Gaps = 8/138 (5%)

Query: 226 LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTL 284
           L   QLE L     HS++        F  +R L  +D+++       + I + L +L+ L
Sbjct: 393 LGLEQLEHLDFQ--HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 285 CLDYSTLGDIT---IIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVI 340
            +  ++  +     I  +L+NL  L L +  + +        L+ L++L++ +   LK +
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSV 509

Query: 341 APNVIASFTRLEELYMSN 358
              +    T L+++++  
Sbjct: 510 PDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 11/143 (7%)

Query: 221 ELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVN 280
            + +       + L L       +    Q     ++ LK +  T+ +  +  S +DL  +
Sbjct: 296 RVKDFSYNFGWQHLELV------NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL-PS 348

Query: 281 LQTLCLDYSTLGDITI----IGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFH 336
           L+ L L  + L              +L+ L L  + ++        L +L  LD  +   
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408

Query: 337 LKVIAPNVIASFTRLEELYMSNC 359
            ++   +V  S   L  L +S+ 
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHT 431

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.3 bits (170), Expect = 7e-13
 Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 7/136 (5%)

Query: 229 PQLELLLLSS-EHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLD 287
            QL  L LSS   S        +   G   LK +DL+   + ++ S+   L  L+ L   
Sbjct: 52  TQLTKLSLSSNGLSFKG--CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 109

Query: 288 Y---STLGDITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPN 343
           +     + + ++   L+NL  L +  +            L+ L +L +      +   P+
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 344 VIASFTRLEELYMSNC 359
           +      L  L +S C
Sbjct: 170 IFTELRNLTFLDLSQC 185

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 50/272 (18%), Positives = 86/272 (31%), Gaps = 46/272 (16%)

Query: 247 IPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLDYSTLGDITIIG----KLK 301
           +P    +    L   +L + +L SLP  + D L  L  L L  + L              
Sbjct: 22  VPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 302 NLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFV 361
           +L+ L L  + ++        L +L  LD  +    ++   +V  S   L  L +S+   
Sbjct: 79  SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

Query: 362 EWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEND-NALPEGFFVRELERFKILIGDR 420
                          A       L  L  L++A  +         F  EL     L    
Sbjct: 139 -------------RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-TELRNLTFL---- 180

Query: 421 SFEPPVILSKDWFR-ISRSHFLILDHQSLRMLKLKLNW-KTICLRKLQGIRKVEYLCLDK 478
                  LS+     +S + F  L   SL++L +  N   ++     + +  ++ L    
Sbjct: 181 ------DLSQCQLEQLSPTAFNSL--SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS- 231

Query: 479 FQGVKNILFELDTQGF----SQLKHLLVQNNP 506
                N +     Q      S L  L +  N 
Sbjct: 232 ----LNHIMTSKKQELQHFPSSLAFLNLTQND 259

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 47/274 (17%), Positives = 92/274 (33%), Gaps = 40/274 (14%)

Query: 246 NIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLDYSTLGDI--TIIGKLKN 302
            I          L+ + LT+  + ++       L +L+ L L Y+ L ++  +    L +
Sbjct: 66  YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125

Query: 303 LEILSLIESDIVEFPEE--LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCF 360
           L  L+L+ +      E      LTKL++L + N      I     A  T LEEL +    
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS- 184

Query: 361 VEWKVEDEGSSSKKSKASLDELMP-----LPRLTTLEIAVENDNALPEGFFVRELERFKI 415
                             L    P     +  ++ L + ++    L E F        + 
Sbjct: 185 -----------------DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV-TSSVEC 226

Query: 416 LIGDRSFEPPVILSKDWFRISRSHFLILDH-QSLRMLKLKLNWKTICLRKLQGIRKVEYL 474
           L          + +  +  +S      L    + R +K+        ++ L  I  +  L
Sbjct: 227 L----ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282

Query: 475 CLD--KFQGVKNILFELDTQGFSQLKHLLVQNNP 506
                + + V + +F       + L+ + +  NP
Sbjct: 283 EFSRNQLKSVPDGIF----DRLTSLQKIWLHTNP 312

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 17/143 (11%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIES 311
              M  L  + L N+ +  L + I+   N++ L ++     +   I  L NLE L ++  
Sbjct: 40  EAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK 98

Query: 312 DIV-EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGS 370
           D+  +    L  LT L LLD+++           I +  ++  + +S       + D   
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNG---AITD--- 151

Query: 371 SSKKSKASLDELMPLPRLTTLEI 393
                   +  L  LP L +L I
Sbjct: 152 --------IMPLKTLPELKSLNI 166

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITI--IGKLKNLEILSLI 309
                 +K + + N+   +  + I  L NL+ L +    +    I  +  L +L +L + 
Sbjct: 62  IEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 310 ESDI-VEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359
            S        ++  L K+  +DL+    +  I P  + +   L+ L +   
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 25/139 (17%), Positives = 58/139 (41%), Gaps = 12/139 (8%)

Query: 224 EGLE-CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNL 281
            G+E    ++ L +++ H++ + N      +G+  L+ + +    + S    ++  L +L
Sbjct: 60  TGIEYAHNIKDLTINNIHAT-NYN----PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114

Query: 282 QTLCLDYSTLGDITI--IGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKV 339
             L + +S   D  +  I  L  +  + L  +  +     L  L +L+ L++     +  
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD-GVHD 173

Query: 340 IAPNVIASFTRLEELYMSN 358
                I  F +L +LY  +
Sbjct: 174 YRG--IEDFPKLNQLYAFS 190

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.7 bits (171), Expect = 2e-12
 Identities = 69/488 (14%), Positives = 154/488 (31%), Gaps = 76/488 (15%)

Query: 246 NIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYSTLGDI--TIIGKLKN 302
            +    F+   EL+ +DL+  ++ ++   +   L +L  L L  + +          L +
Sbjct: 46  ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105

Query: 303 LEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFV 361
           LE L  +E+ +       +G+L  L+ L++ + F      P   ++ T L  + +S  ++
Sbjct: 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

Query: 362 EWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRS 421
           +    ++    +++      L     ++   I    D A        +  +   L    +
Sbjct: 166 QTITVNDLQFLRENPQVNLSL----DMSLNPIDFIQDQAF-------QGIKLHELTLRGN 214

Query: 422 FEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQG 481
           F    I+      ++  H   L     +  +   N +      ++G+  V          
Sbjct: 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDER---NLEIFEPSIMEGLCDVTIDEFR---L 268

Query: 482 VKNILFELDTQGFSQLKHL----LVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINL 537
                F  D   F  L ++    L   +   L               + +    Q+L ++
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL-------------EDVPKHFKWQSL-SI 314

Query: 538 KRICVDRLSTESFSELRTMKVENCDELSN--IFVLSTTKCLPSLQRIAVIKCNKMKEIFA 595
            R  + +  T     L+++       L+     +      LPSL  + +           
Sbjct: 315 IRCQLKQFPTLDLPFLKSL------TLTMNKGSISFKKVALPSLSYLDL----------- 357

Query: 596 IGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNL 655
                     + NA+          L   +L  L           +  + F G   L  L
Sbjct: 358 ----------SRNALSFSGCCSYSDLGTNSLRHLDLSFNGA---IIMSANFMG---LEEL 401

Query: 656 EALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCT 715
           + L+     +K +         ++L  L +      K + +  +   L  L  L++   +
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN-TK-IDFDGIFLGLTSLNTLKMAGNS 459

Query: 716 GLQVIISE 723
                +S 
Sbjct: 460 FKDNTLSN 467

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.2 bits (162), Expect = 2e-11
 Identities = 29/143 (20%), Positives = 49/143 (34%), Gaps = 7/143 (4%)

Query: 222 LPEGLECPQLELLLLSS-EHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVN 280
             + +  P L  L LS    S            G   L+ +DL+      + ++   L  
Sbjct: 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDL--GTNSLRHLDLSFNGAIIMSANFMGLEE 400

Query: 281 LQTLCLDY---STLGDITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFH 336
           LQ L   +     + + +    L+ L  L +  ++     +     LT L  L +     
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 337 LKVIAPNVIASFTRLEELYMSNC 359
                 NV A+ T L  L +S C
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKC 483

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 9/136 (6%)

Query: 228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQL--FSLPSSIDLLVNLQTLC 285
             +L  L +S  ++          F G+  L  + +        +L +      NL  L 
Sbjct: 423 LEKLLYLDISYTNTK---IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 286 LDYSTLGDIT--IIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAP 342
           L    L  I+  +   L  L++L++  ++++        +L  L  LD +    ++    
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKG 538

Query: 343 NVIASFTRLEELYMSN 358
            +      L    ++N
Sbjct: 539 ILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 7e-07
 Identities = 47/317 (14%), Positives = 87/317 (27%), Gaps = 78/317 (24%)

Query: 228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS---SIDLLVNLQTL 284
            P L+ L L+    S+           +  L  +DL+   L        S     +L+ L
Sbjct: 327 LPFLKSLTLTMNKGSISFK-----KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 285 CLDYSTLGDI-TIIGKLKNLEILSLIESDIVEFPEE--LGKLTKLRLLDLTNCFHLKVIA 341
            L ++    +      L+ L+ L    S +    E      L KL  LD++   + K+  
Sbjct: 382 DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKIDF 440

Query: 342 PNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL 401
             +    T L  L M+    +                 +       LT L++   +   L
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLS------------NVFANTTNLTFLDL---SKCQL 485

Query: 402 PEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNW-KTI 460
            +                        +S   F              L++L +  N    +
Sbjct: 486 EQ------------------------ISWGVFD---------TLHRLQLLNMSHNNLLFL 512

Query: 461 CLRKLQGIRKVEYLCLD--KFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIV 518
                  +  +  L     + +  K IL          L    + NN           + 
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIETSKGILQHF----PKSLAFFNLTNNS----------VA 558

Query: 519 -DCDAFPLLELLSLQNL 534
             C+    L+ +  Q  
Sbjct: 559 CICEHQKFLQWVKEQKQ 575

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.8 bits (171), Expect = 2e-12
 Identities = 79/515 (15%), Positives = 153/515 (29%), Gaps = 93/515 (18%)

Query: 221 ELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLV 279
            +P GL    ++ L LS    +    I          L+V+ L + ++ ++       L 
Sbjct: 19  SIPSGL-TAAMKSLDLSFNKIT---YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 74

Query: 280 NLQTLCLDYSTLGDI--TIIGKLKNLEILSLIESDIVEFPE--ELGKLTKLRLLDLTNCF 335
           +L+ L L  + L  +  +  G L +L+ L+L+ +             LT L+ L + N  
Sbjct: 75  SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134

Query: 336 HLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAV 395
               I     A  T L EL +    +                    L  +  +  L + +
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSL-------------RNYQSQSLKSIRDIHHLTLHL 181

Query: 396 ENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKL 455
                L E F                             +S   +L L   +L   +   
Sbjct: 182 SESAFLLEIFAD--------------------------ILSSVRYLELRDTNLARFQFSP 215

Query: 456 NWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDL-LFIVDS 514
                    ++ +                       +   +L  +   +     L   + 
Sbjct: 216 LPVDEVSSPMKKL----AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP 271

Query: 515 REIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSN--IFVLST 572
            E         +E ++++ L ++ +  +    +  +S L  +K      + N  +F++  
Sbjct: 272 SESDVVSELGKVETVTIRRL-HIPQFYLFYDLSTVYSLLEKVKRIT---VENSKVFLVPC 327

Query: 573 TKC--LPSLQRIAVIKCNKMKEIFAIGGEEPDVVDN-------NNAIENIEFAQIRYLSL 623
           +    L SL+ +  +  N M E +           +        N + +++      L+L
Sbjct: 328 SFSQHLKSLEFL-DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386

Query: 624 GNLPELK----SFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQR 679
            NL  L     +F        MP S          +  L L    ++ +      C  Q 
Sbjct: 387 KNLTSLDISRNTFH------PMPDSCQW----PEKMRFLNLSSTGIRVVK----TCIPQT 432

Query: 680 LTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNC 714
           L  L V            S    L +LQ L I   
Sbjct: 433 LEVLDVSNNN------LDSFSLFLPRLQELYISRN 461

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.9 bits (148), Expect = 1e-09
 Identities = 97/627 (15%), Positives = 188/627 (29%), Gaps = 145/627 (23%)

Query: 258 LKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDIT--IIGKLKNLEILSLIESDIVE 315
             V D  +    S+PS   L   +++L L ++ +  I    +    NL++L L  S I  
Sbjct: 7   SGVCDGRSRSFTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 64

Query: 316 FPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKK 374
              +    L  L  LDL++  HL  ++ +     + L+ L +                 +
Sbjct: 65  IEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPY------------Q 111

Query: 375 SKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFR 434
           +         L  L TL I   N     E                               
Sbjct: 112 TLGVTSLFPNLTNLQTLRIG--NVETFSE------------------------------- 138

Query: 435 ISRSHFLILDHQSLRMLKLKLNW-KTICLRKLQGIRKVEYLCLD--KFQGVKNILFELDT 491
           I R  F  L   SL  L++K    +    + L+ IR + +L L   +   +  I      
Sbjct: 139 IRRIDFAGL--TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA---- 192

Query: 492 QGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFS 551
              S +++L +++         +         P+ E+ S    +  +   +   S     
Sbjct: 193 DILSSVRYLELRDT--------NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

Query: 552 ELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIE 611
           +L          +  +  +    C  +L  +     ++   +  +G  E   +   + I 
Sbjct: 245 KLL-------RYILELSEVEFDDC--TLNGLGDFNPSESDVVSELGKVETVTIRRLH-IP 294

Query: 612 NIEFAQIRYLSLGNLPELKSFCCEVKG---PSMPPSLFNGKVVLPNLEALELCEINVKSI 668
                         L ++K     V+      +P S       L +LE L+L E N+   
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRI--TVENSKVFLVPCSFSQH---LKSLEFLDLSE-NLMVE 348

Query: 669 WHNQTPCCF---QRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGG 725
            + +   C      L  L++             ++ +L+ L  L+I              
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN----------- 397

Query: 726 PGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCD--KLNTFASESF 783
                                     +            +K+   +     +    +   
Sbjct: 398 ----------------------TFHPMPDSCQ-----WPEKMRFLNLSSTGIRVVKTCIP 430

Query: 784 SFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLS---IKDIMMLLQGDFPQDHLFGSLKDL 840
                  + L V      SF    P L+EL +S   +K +        P   LF  L  +
Sbjct: 431 Q----TLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTL--------PDASLFPVLLVM 478

Query: 841 EVRDDDSASVPIGLLEKFHGLENLNLS 867
           ++  +   SVP G+ ++   L+ + L 
Sbjct: 479 KISRNQLKSVPDGIFDRLTSLQKIWLH 505

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.5 bits (170), Expect = 3e-12
 Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 14/151 (9%)

Query: 220 GELPEGL-ECPQLELLLLSS-------EHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL 271
            +LP+ L + P+L+ L ++        +  +    +         ++++  +    L   
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD-DEDTGPKIQIFYMGYNNLEEF 563

Query: 272 PSSIDL--LVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGK-LTKLRL 328
           P+S  L  +V L  L   ++ +  +   G    L  L L  + I E PE+      ++  
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEG 623

Query: 329 LDLTNCFHLKVIAPNV-IASFTRLEELYMSN 358
           L  ++   LK I       S   +  +  S 
Sbjct: 624 LGFSHN-KLKYIPNIFNAKSVYVMGSVDFSY 653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 24/171 (14%), Positives = 56/171 (32%), Gaps = 11/171 (6%)

Query: 231 LELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYST 290
            +LL  +   +     I +     +++ ++ +LTN ++  +  +I  L  LQ +    S 
Sbjct: 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITFISKAIQRLTKLQIIYFANSP 459

Query: 291 LGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTR 350
                    +   +  S               L  L  ++L NC ++  + P+ +     
Sbjct: 460 FT--YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL-PDFLYDLPE 516

Query: 351 LEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL 401
           L+ L ++      +               D+    P++    +     N L
Sbjct: 517 LQSLNIACN----RGISAAQLKADWTRLADDEDTGPKIQIFYM---GYNNL 560

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 3e-08
 Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 24/158 (15%)

Query: 221 ELPEGL--ECPQLELLLLSSEHSSVDVNIPQRF-FTGMRELKVVDLTNMQLFSLPSSIDL 277
           E+PE       Q+E L  S         IP  F    +  +  VD +  ++ S   +I  
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKY---IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 278 ------LVNLQTLCLDYSTLGDI--TIIGKLKNLEIL--------SLIESDIVEFPEELG 321
                  +N  T+ L Y+ +      +      +  +        S+ E+ +        
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 322 KLTKLRLLDLTNCFHLKVIAPNV-IASFTRLEELYMSN 358
               L  +DL     L  ++ +    +   L  + +S 
Sbjct: 726 NTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSY 762

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 14/115 (12%)

Query: 228 CPQLELLLLSSEH-SSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCL 286
              L  + L     +S+  +      T +  L  +D++     S P+       L+   +
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDF---RATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGI 783

Query: 287 DY-------STLGDI-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTN 333
            +         L    T I    +L  L +  +DI +  E+L    +L +LD+ +
Sbjct: 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIAD 836

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 29/203 (14%), Positives = 58/203 (28%), Gaps = 45/203 (22%)

Query: 246 NIPQRFFTGMRELKVVDLTNMQL-FSLPSSIDLLVNLQTLCLDYSTLGDI---------- 294
           + P         +  + L        +P +I  L  L+ L     +              
Sbjct: 313 DQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT 372

Query: 295 -----------------TIIGKLKNLEILSLIESDIVEFPE-------ELGKLTKLRLLD 330
                              +   + L +  L++  I   PE           L   ++ +
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432

Query: 331 LTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEG------SSSKKSKASLDELMP 384
           LTN   +  I    I   T+L+ +Y +N    +              +K+ +        
Sbjct: 433 LTN--RITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489

Query: 385 LPRLTTLEIAVEND-NALPEGFF 406
           L  LT +E+    +   LP+  +
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLY 512

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.1 bits (163), Expect = 2e-11
 Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 20/144 (13%)

Query: 251 FFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIE 310
               +  +  +   N  + S+   I  L N+  L L+ + L DI  +  LKNL  L L E
Sbjct: 38  TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDE 96

Query: 311 SDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGS 370
           + I +    L  L KL+ L L +   +  I    +    +LE LY+ N     K+ D   
Sbjct: 97  NKIKDL-SSLKDLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNN----KITD--- 145

Query: 371 SSKKSKASLDELMPLPRLTTLEIA 394
                   +  L  L +L TL + 
Sbjct: 146 --------ITVLSRLTKLDTLSLE 161

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.5 bits (107), Expect = 7e-05
 Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 13/143 (9%)

Query: 224 EGLE-CPQLELLLLSSEH-SSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNL 281
            GL   PQLE L L +   + +         + + +L  + L + Q+  +   +  L  L
Sbjct: 125 NGLVHLPQLESLYLGNNKITDIT------VLSRLTKLDTLSLEDNQISDI-VPLAGLTKL 177

Query: 282 QTLCLDYSTLGDITIIGKLKNLEILSLIESDIV-EFPEELGKLTKLRLLDLTNCFHLKVI 340
           Q L L  + + D+  +  LKNL++L L   + + +       L     +  T+     ++
Sbjct: 178 QNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD---GSLV 234

Query: 341 APNVIASFTRLEELYMSNCFVEW 363
            P +I+     E+  +     E+
Sbjct: 235 TPEIISDDGDYEKPNVKWHLPEF 257

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.4 bits (160), Expect = 5e-11
 Identities = 85/473 (17%), Positives = 154/473 (32%), Gaps = 76/473 (16%)

Query: 246 NIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYSTLGDI--TIIGKLKN 302
            I    F+ +  L  +DLT  Q++ +   +      L TL L  + L  +  T +   K 
Sbjct: 47  TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106

Query: 303 LEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMS-NCF 360
           L+ L  I++ I       L     L  L L +  H+  I         +L+ L    N  
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAI 165

Query: 361 VEWKVEDEGSSSKKSKASLD-----------ELMPLPRLTTLEIAV-ENDNALPEGFFVR 408
                ED  S  + +  SL+                    +L     +N   + +G    
Sbjct: 166 HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS 225

Query: 409 ELERFKIL---------IGDRSFEPPVILSKDWFRISRSHFLILDH------QSLRMLKL 453
            ++   +          I    FE    +S +   + + +F  +          L+ L L
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285

Query: 454 KLNWKTICLRKLQGIRKVEYLCLD--KFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFI 511
                +     L G+  ++ L L   KF+ +  I        F  L HL ++ N   L +
Sbjct: 286 TATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA----SNFPSLTHLSIKGNTKRLEL 341

Query: 512 VDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLS 571
                    +    L  L L +  +++      L   + S L+++ +    E  ++    
Sbjct: 342 GTG----CLENLENLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSL-KTE 394

Query: 572 TTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSL-GNLPELK 630
             K  P L+ +  +   ++K             D  +  +N     ++ L+L  +   L 
Sbjct: 395 AFKECPQLELL-DLAFTRLKVK-----------DAQSPFQN--LHLLKVLNLSHS--LLD 438

Query: 631 SFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRL 683
                         LF+G   LP L+ L L   +       Q     Q L RL
Sbjct: 439 IS---------SEQLFDG---LPALQHLNLQGNHFPKGNI-QKTNSLQTLGRL 478

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 59/334 (17%), Positives = 103/334 (30%), Gaps = 62/334 (18%)

Query: 215 IDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSS 274
            +     + EGL    +E + L   +     NI    F     L+ +DLT   L  LPS 
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFF---NISSNTFHCFSGLQELDLTATHLSELPSG 296

Query: 275 IDLLVNLQTLCLDYSTLGDI--TIIGKLKNLEILSLIESDIV--EFPEELGKLTKLRLLD 330
           +  L  L+ L L  +   ++         +L  LS+  +          L  L  LR LD
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 331 LT-NCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLT 389
           L+ +           + + + L+ L +S               +      +     P+L 
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYN-------------EPLSLKTEAFKECPQLE 403

Query: 390 TLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDH---- 445
            L++A                 R K+      F+   +L      +S S   I       
Sbjct: 404 LLDLA---FT------------RLKVKDAQSPFQNLHLLK--VLNLSHSLLDISSEQLFD 446

Query: 446 --QSLRMLKL---KLNWKT-ICLRKLQGIRKVEYLCLD--KFQGVKNILFELDTQGFSQL 497
              +L+ L L               LQ + ++E L L       +    F         +
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF----TSLKMM 502

Query: 498 KHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSL 531
            H+ + +N   L           +A   L+ + L
Sbjct: 503 NHVDLSHN--RL------TSSSIEALSHLKGIYL 528

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 35/160 (21%), Positives = 60/160 (37%), Gaps = 31/160 (19%)

Query: 228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCL 286
           CPQLELL L+   + + V   Q  F  +  LKV++L++  L        D L  LQ L L
Sbjct: 399 CPQLELLDLA--FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456

Query: 287 DYSTLGDIT-----IIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTN------- 333
             +            +  L  LEIL L   D+    +     L  +  +DL++       
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516

Query: 334 --CF-------------HLKVIAPNVIASFTRLEELYMSN 358
                            H+ +I P+++   ++   + +  
Sbjct: 517 IEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 72/486 (14%), Positives = 142/486 (29%), Gaps = 95/486 (19%)

Query: 259 KVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPE 318
           K  +  N+ L  +P ++                          + E L    + +     
Sbjct: 15  KTYNCENLGLNEIPGTL------------------------PNSTECLEFSFNVLPTIQN 50

Query: 319 E-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKA 377
               +L  L  LDLT C  +  I  +   S  RL+ L ++   +                
Sbjct: 51  TTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPL-------------IFM 96

Query: 378 SLDELMPLPRLTTLEIAVEND-NALPEGFFVRELERFKIL---------IGDRSFEPP-- 425
           +   L     L  L    +   +++         +  + L         I      P   
Sbjct: 97  AETALSGPKALKHLFFI-QTGISSIDFIPL-HNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 426 ---VILSKDWFR-ISRSHFLILDHQSLRMLKLKLNW---KTICLRKLQGIRKVEYLCLDK 478
              +    +    +S+     L  Q    L L LN      I           + L    
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSL--QQATNLSLNLNGNDIAGIEPGAFDSAV-FQSLNFGG 211

Query: 479 FQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLK 538
            Q +  I   L       L     ++           E +    F  L  +S++++ NL+
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDM--------DDEDISPAVFEGLCEMSVESI-NLQ 262

Query: 539 RICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGG 598
           +     +S+ +F     ++  +        + S    L +L+++ +   NK + +     
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSA-NKFENL----- 316

Query: 599 EEPDVVDNNNAIE------NIEFAQIRYLSLGNLPELK----SFCCEVKGPSMPPSLFNG 648
                  N  ++       N +  ++    L NL  L+    S             L N 
Sbjct: 317 -CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN- 374

Query: 649 KVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQH 708
              L +L++L L      S+          +L  L +   + LK     S  ++L  L+ 
Sbjct: 375 ---LSHLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKV 429

Query: 709 LEIRNC 714
           L + + 
Sbjct: 430 LNLSHS 435

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.4 bits (157), Expect = 7e-11
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNM-QLFSLPSSI-DLLVNLQTLCL 286
            +L+ L L +       +IP   F  +  L+ +DL  + +L  +     + L NL+ L L
Sbjct: 136 SKLKELWLRNNPIE---SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192

Query: 287 DYSTLGDITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVI 345
               L +I  +  L  L+ L L  + +          L  L+ L +     ++VI  N  
Sbjct: 193 AMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAF 251

Query: 346 ASFTRLEELYMSN 358
            +   L E+ +++
Sbjct: 252 DNLQSLVEINLAH 264

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.0 bits (156), Expect = 9e-11
 Identities = 44/193 (22%), Positives = 72/193 (37%), Gaps = 29/193 (15%)

Query: 221 ELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLV 279
           E+P+G+      LL L          I    F  +R L+++ L+   + ++     + L 
Sbjct: 57  EVPDGIS-TNTRLLNLHENQIQ---IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA 112

Query: 280 NLQTLCLDYSTLGDIT--IIGKLKNLEILSLIESDIVEFPEEL-GKLTKLRLLDLTNCFH 336
           NL TL L  + L  I       L  L+ L L  + I   P     ++  LR LDL     
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172

Query: 337 LKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVE 396
           L  I+       + L  L ++ C +                 +  L PL +L  L++   
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNL---------------REIPNLTPLIKLDELDL--- 214

Query: 397 NDN---ALPEGFF 406
           + N   A+  G F
Sbjct: 215 SGNHLSAIRPGSF 227

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.2 bits (141), Expect = 7e-09
 Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 8/119 (6%)

Query: 246 NIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLDY----STLGDITIIGKL 300
            IP   F  + +LK + L N  + S+PS   + + +L+ L L      S + +    G L
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-L 184

Query: 301 KNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359
            NL  L+L   ++ E P  L  L KL  LDL+   HL  I P        L++L+M   
Sbjct: 185 SNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS 241

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 33/158 (20%), Positives = 53/158 (33%), Gaps = 26/158 (16%)

Query: 256 RELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITII-----GKLKNLEILSLIE 310
            +   V      L  +P  I    N + L L  +    I II       L++LEIL L  
Sbjct: 43  NQFSKVICVRKNLREVPDGIS--TNTRLLNLHEN---QIQIIKVNSFKHLRHLEILQLSR 97

Query: 311 SDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEG 369
           + I          L  L  L+L +   L  I        ++L+EL++ N  +        
Sbjct: 98  NHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPI-------- 148

Query: 370 SSSKKSKASLDELMPLPRLTTLEIAVEND-NALPEGFF 406
                          +P L  L++      + + EG F
Sbjct: 149 -----ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 7e-11
 Identities = 90/602 (14%), Positives = 167/602 (27%), Gaps = 186/602 (30%)

Query: 445 HQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQN 504
           H      + +  +K I            + C D     K+IL +       ++ H+++  
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVD-NFDCKDVQDMPKSILSK------EEIDHIIMSK 58

Query: 505 NPD----LLFIV---DSREIVDCDAFPLLELLSLQN---LIN-LKRICVDR-LSTESFSE 552
           +       LF        E+V    F + E+L   N   L++ +K       + T  + E
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQ--KF-VEEVLR-INYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 553 LRTMKVENCDELSNIFV------LSTTKCLPSLQRIAVIKCNKM----KEIFAIGGEEPD 602
            R     +    +   V      L   + L  L+    +  + +    K   A+     D
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL-----D 169

Query: 603 VVDNNNAIENIEFAQIRYLSLGN-------LPELKSFCCEVKGPSMPPSLFNGKVVLPNL 655
           V  +      ++F +I +L+L N       L  L+    ++                PN 
Sbjct: 170 VCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQID---------------PNW 213

Query: 656 EALELCEINVKSIWHNQTPCCFQRLTRLI--------------VW----------GCQKL 691
            +      N+K   H+        L RL+              V            C+ L
Sbjct: 214 TSRSDHSSNIKLRIHSIQ----AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 692 KFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPP----CFAFRRVTNISLCHLP 747
               +  +   L           T   + +        P          +  +     LP
Sbjct: 270 LTTRFKQVTDFLS--------AATTTHISLDHHSMTLTPDEVKSLLL--KYLDCRPQDLP 319

Query: 748 ELTC----LYPGL-------HTSEWPELKKLEVFSCDKLNTFASESF-SFHSNEKKQL-- 793
                       +         + W   K +    CDKL T    S       E +++  
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVN---CDKLTTIIESSLNVLEPAEYRKMFD 376

Query: 794 ---------HVPKQ---------PFFSFEKIFPNLEELGL----------SIKDIMMLLQ 825
                    H+P                  +   L +  L          SI  I + L+
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 826 GDFPQD---H--LFGSLKDLEVRDDDSASVP---------IG-------LLEKFHGLEN- 863
                +   H  +       +  D D    P         IG         E+       
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 864 -LNLSFCSYK------ELFSNGGQVHLIKKLEL----ICLNDLEYLWIPNSKMGDSILQN 912
            L+  F   K         ++G  ++ +++L+     IC ND +Y      ++ ++IL  
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY-----ERLVNAILDF 551

Query: 913 LE 914
           L 
Sbjct: 552 LP 553

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 8e-11
 Identities = 56/354 (15%), Positives = 109/354 (30%), Gaps = 97/354 (27%)

Query: 12  LNEEEAWRLFEVKLGN--DDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWK 69
           L  +E   L    L     DL PR         +     P  +  IA+++R+   +  W 
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDL-PR---------EVLTTNPRRLSIIAESIRDGLAT--WD 345

Query: 70  NALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMPKSF-FASDLFKY 128
           N  H               K  T I+ S + L+  + +K+F   S+ P S    + L   
Sbjct: 346 NWKHVNCD-----------KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--- 391

Query: 129 CIGLGIF-RGIDMEDARNKLYTLVHELKDSCLLLEGYSCREFSMHDVVHDVAILIACGEQ 187
              L +    +   D       +V++L    L+ +       S+  +  +  + +    +
Sbjct: 392 ---LSLIWFDVIKSDVMV----VVNKLHKYSLVEKQPKESTISIPSIYLE--LKVKLENE 442

Query: 188 KEF---LVRNGDVWEWPDEDALKKCY-----AISWIDS----------SGGELPEGLECP 229
                 +V         D   + K +        ++D              E PE     
Sbjct: 443 YALHRSIV---------DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE--RMT 491

Query: 230 QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYS 289
              ++ L       D     RF     E K+    +    +  S ++ L  L+     Y 
Sbjct: 492 LFRMVFL-------DF----RFL----EQKIR-HDSTAWNASGSILNTLQQLKF----YK 531

Query: 290 TLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPN 343
               I       N      + + I++F  ++     L     T+   + ++A +
Sbjct: 532 PY--IC-----DNDPKYERLVNAILDFLPKIE--ENLICSKYTDLLRIALMAED 576

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 3e-09
 Identities = 101/697 (14%), Positives = 195/697 (27%), Gaps = 195/697 (27%)

Query: 262 DLTNMQLFSLPSSIDLL-VNLQTLC--LDYSTLGDITIIGKLKNLEILSLIESD-IVEFP 317
           +    Q        D+L V         D   + D+          ILS  E D I+   
Sbjct: 10  ETGEHQY----QYKDILSVFEDAFVDNFDCKDVQDMP-------KSILSKEEIDHIIMSK 58

Query: 318 EELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKA 377
           + +     LRL        L      ++  F  +EE+   N   ++ +            
Sbjct: 59  DAVSGT--LRLFWT-----LLSKQEEMVQKF--VEEVLRIN--YKFLMS------PIKTE 101

Query: 378 SLDELMPLPRLTTLEIAVENDNALPEGFFVRELERF----KILIGDRSFEPPVIL----- 428
                M           + NDN +   + V  L+ +    + L+  R     V++     
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP-AKNVLIDGVLG 160

Query: 429 -SKDWFRISRSHFLILDHQSLRMLKLKLNWKTI--CLRKLQGIRKVEYLC--LDK----- 478
             K W  +     + L ++    +  K+ W  +  C      +  ++ L   +D      
Sbjct: 161 SGKTWVALD----VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 479 FQGVKNILFELDTQGFSQLKHLLVQNN-PDLLFIVD---SREIVDCDAFPLLELLSLQNL 534
                NI   +     ++L+ LL      + L ++    + +  +  AF     LS + L
Sbjct: 217 SDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQNAKAWN--AF----NLSCKIL 269

Query: 535 INLKRICV-DRLSTESFSELRTMKVENC---DELSNIF--VLST-TKCLP------SLQR 581
           +  +   V D LS  + + +           DE+ ++    L    + LP      + +R
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 582 IAVI-----------------KCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIR--YLS 622
           +++I                  C+K+  I               ++  +E A+ R  +  
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIES------------SLNVLEPAEYRKMFDR 377

Query: 623 LGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTR 682
           L   P           P+         +    L  +          W +           
Sbjct: 378 LSVFPP------SAHIPT--------IL----LSLI----------WFDVIK----SDVM 405

Query: 683 LIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNIS 742
           ++V    K           SL     +E +       I          P           
Sbjct: 406 VVVNKLHK----------YSL-----VEKQPKESTISI----------PSIYLE-----L 435

Query: 743 LCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSF-----HSNEKKQLHVPK 797
              L         LH S        + F  D L     + + +     H    +      
Sbjct: 436 KVKLENE----YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH----P 487

Query: 798 QPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLE---VRDDDSASVPIGL 854
           +    F  +F +   L   I+             +    LK  +     +D      +  
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547

Query: 855 LEKF-HGLENLNLSFCSYKELFSNGGQVHLIKKLELI 890
           +  F   +E  NL    Y +L     ++ L+ + E I
Sbjct: 548 ILDFLPKIEE-NLICSKYTDLL----RIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 5e-09
 Identities = 83/543 (15%), Positives = 156/543 (28%), Gaps = 152/543 (27%)

Query: 10  EILNE----EEAWRLFEVKLGNDDLIPRMKSTATHIVKEC-----GGL--PIAIEPIAKA 58
            I+          RLF        L+ + +      V+E        L  PI  E    +
Sbjct: 53  HIIMSKDAVSGTLRLFWT------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106

Query: 59  LRNKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLMP- 117
           +  +   E      ++ ++  + N  R   + Y  ++    AL   +  K   +   +  
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRL--QPYLKLR---QALLELRPAKNVLIDG-VLG 160

Query: 118 --KSFFASDL-----FKYCIGLGIF-----RGIDMEDARNKLYTLVHEL-KDSCLLLEGY 164
             K++ A D+      +  +   IF          E     L  L++++  +     +  
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 165 SCREFSMHDVVHDVAILIACGEQKEFLVRNGDVWEWPDEDALK-KC-------------- 209
           S  +  +H +  ++  L+     +  L+   +V      +A    C              
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 210 ------YAIS-------------------WIDSSGGELPEGLECPQLELLLLS--SEHSS 242
                   IS                   ++D    +LP   E        LS  +E   
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--EVLTTNPRRLSIIAESIR 338

Query: 243 VDVNIPQRF-------FTGMRE--LKVVDLTNMQ-----LFSLPSSIDLLVNLQTLCL-- 286
             +     +        T + E  L V++    +     L   P S    +    L L  
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--IPTILLSLIW 396

Query: 287 -DYSTLGDITIIGKLKNLEILSLIESDIVEF--------------PEELGKLTKLRLLD- 330
            D      + ++ KL      SL+E    E                E    L +  ++D 
Sbjct: 397 FDVIKSDVMVVVNKLHKY---SLVEKQPKESTISIPSIYLELKVKLENEYALHR-SIVDH 452

Query: 331 --LTNCF--------------------HLKVIAPNVIASFTRLEELYMSNCFVEWKVEDE 368
             +   F                    HLK I        T    +++   F+E K+  +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH--PERMTLFRMVFLDFRFLEQKIRHD 510

Query: 369 GSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVIL 428
            ++   S + L+ L  L +     I  +ND        V  +  F         E  +I 
Sbjct: 511 STAWNASGSILNTLQQL-KFYKPYI-CDNDPKYER--LVNAILDFL-----PKIEENLIC 561

Query: 429 SKD 431
           SK 
Sbjct: 562 SKY 564

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 2e-06
 Identities = 76/443 (17%), Positives = 137/443 (30%), Gaps = 138/443 (31%)

Query: 180 ILIACGEQ--KEFLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLS 237
            L++  E+  ++F+           E+ L+  Y   ++ S           P +   +  
Sbjct: 70  TLLSKQEEMVQKFV-----------EEVLRINY--KFLMSPIKTEQRQ---PSMMTRMYI 113

Query: 238 SEHSSVDVNIPQRF--FTGMRELKVVDLTNMQLFSLPSSIDLLVN------LQTL----C 285
            +   +  N  Q F  +   R    + L    L  L  + ++L++         +    C
Sbjct: 114 EQRDRL-YNDNQVFAKYNVSRLQPYLKLRQA-LLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 286 LDYS------------TLG----DITIIGKLKNL------------EILSLIESDIVEFP 317
           L Y              L       T++  L+ L            +  S I+  I    
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 318 EELGKLTKLR-----LLDLTNCFHLKVIAPNVIASF---------TRLEELYMSNCFVEW 363
            EL +L K +     LL L N     V       +F         TR ++          
Sbjct: 232 AELRRLLKSKPYENCLLVLLN-----VQNAKAWNAFNLSCKILLTTRFKQ---------- 276

Query: 364 KVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFE 423
            V D  S++  +  SLD       LT  E+         +   ++ L+       D    
Sbjct: 277 -VTDFLSAATTTHISLDHHSMT--LTPDEV---------KSLLLKYLD---CRPQD---L 318

Query: 424 PPVILSKDWFRISRSHFLI--LDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLD---- 477
           P  +L+ +  R+S    +I       L       NWK +   KL  I +     L+    
Sbjct: 319 PREVLTTNPRRLS----IIAESIRDGLATWD---NWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 478 --KFQGVKNILFELDTQGFSQLKHLLVQNNP--DLLFIVD---SREIVDCDAFP------ 524
              F  +   +F       + L  L+  +    D++ +V+      +V+           
Sbjct: 372 RKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 525 ---LLELLSLQNLINLKRICVDR 544
              L   + L+N   L R  VD 
Sbjct: 430 SIYLELKVKLENEYALHRSIVDH 452

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.3 bits (155), Expect = 9e-11
 Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 4/107 (3%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIES 311
            + + +L  + +   ++ +  S++  L NL+ L L+   + DI+ +  L  +  L+L  +
Sbjct: 84  LSNLVKLTNLYIGTNKI-TDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGAN 142

Query: 312 DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
             +     L  +T L  L +T    +K + P  IA+ T L  L ++ 
Sbjct: 143 HNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNY 186

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 5/108 (4%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIES 311
              +  +  + +   ++ S+   I+ L NL+ L L+ + + DI+ +  L  L  L +  +
Sbjct: 40  QEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN 98

Query: 312 DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359
            I +    L  LT LR L L    ++  I+P  +A+ T++  L +   
Sbjct: 99  KITDIS-ALQNLTNLRELYLNED-NISDISP--LANLTKMYSLNLGAN 142

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 7e-10
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 20/140 (14%)

Query: 254 GMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDI 313
            + E     L    +  + +  + L ++  L +    +  I  I  L NLE L+L  + I
Sbjct: 20  DLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI 78

Query: 314 VEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSK 373
            +    L  L KL  L +     +  I+   + + T L ELY++   +            
Sbjct: 79  TDIS-PLSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYLNEDNIS----------- 123

Query: 374 KSKASLDELMPLPRLTTLEI 393
                +  L  L ++ +L +
Sbjct: 124 ----DISPLANLTKMYSLNL 139

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.3 bits (142), Expect = 4e-09
 Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 251 FFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIE 310
               + +L  +++   Q+  + + +  L  L+ L +  + + DI+++  L  L  L L  
Sbjct: 238 PLANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNN 296

Query: 311 SDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
           + +     E +G LT L  L L+   H+  I P  +AS ++++    +N
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP--LASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 2e-08
 Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 23/150 (15%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIES 311
              + +L  + L   Q+  + S +  L +L       + + DIT +  +  L  L +  +
Sbjct: 173 IANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN 231

Query: 312 DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSS 371
            I +    L  L++L  L++      ++   N +   T+L+ L + +  +          
Sbjct: 232 KITDLS-PLANLSQLTWLEIGTN---QISDINAVKDLTKLKMLNVGSNQIS--------- 278

Query: 372 SKKSKASLDELMPLPRLTTLEIAVENDNAL 401
                  +  L  L +L +L +   N+N L
Sbjct: 279 ------DISVLNNLSQLNSLFL---NNNQL 299

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 23/140 (16%)

Query: 254 GMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDI 313
           G   L  +     Q+F        L       L  +++ D+    +L+++  L +    +
Sbjct: 1   GAATLATLPAPINQIFPDAD----LAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKV 56

Query: 314 VEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSK 373
                 +  LT L  L+L     +  I+P  +++  +L  LY+    +            
Sbjct: 57  ASIQ-GIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKIT----------- 101

Query: 374 KSKASLDELMPLPRLTTLEI 393
                +  L  L  L  L +
Sbjct: 102 ----DISALQNLTNLRELYL 117

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 34/135 (25%), Positives = 45/135 (33%), Gaps = 9/135 (6%)

Query: 229 PQLELLLLSS-EHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCL 286
             LE L LS          +    F G+  L  + L    L  L   +   L  LQ L L
Sbjct: 80  ALLEQLDLSDNAQLRS---VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136

Query: 287 DYSTLGDIT--IIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPN 343
             + L  +       L NL  L L  + I   PE     L  L  L L     +  + P+
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPH 195

Query: 344 VIASFTRLEELYMSN 358
                 RL  LY+  
Sbjct: 196 AFRDLGRLMTLYLFA 210

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 14/145 (9%)

Query: 221 ELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLV 279
            +P G+     + + L     S   ++P   F   R L ++ L +  L  + ++    L 
Sbjct: 25  AVPVGIP-AASQRIFLHGNRIS---HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80

Query: 280 NLQTLCLDYSTLGDITII-----GKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTN 333
            L+ L L  +    +  +       L  L  L L    + E        L  L+ L L +
Sbjct: 81  LLEQLDLSDNA--QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 334 CFHLKVIAPNVIASFTRLEELYMSN 358
              L+ +  +       L  L++  
Sbjct: 139 N-ALQALPDDTFRDLGNLTHLFLHG 162

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 5/102 (4%)

Query: 261 VDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDIT--IIGKLKNLEILSLIESDIVEFPE 318
                  L ++P  I      Q + L  + +  +        +NL IL L  + +     
Sbjct: 16  TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 319 E-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359
                L  L  LDL++   L+ + P       RL  L++  C
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 7/133 (5%)

Query: 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNM-QLFSLPSSI-DLLVNLQTLCL 286
            +L  L L +       +IP   F  +  L  +DL  + +L  +     + L NL+ L L
Sbjct: 147 SKLRELWLRNNPIE---SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203

Query: 287 DYSTLGDITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVI 345
               + D+  +  L  LE L +  +   E        L+ L+ L + N   + +I  N  
Sbjct: 204 GMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAF 262

Query: 346 ASFTRLEELYMSN 358
                L EL +++
Sbjct: 263 DGLASLVELNLAH 275

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.9 bits (148), Expect = 9e-10
 Identities = 38/177 (21%), Positives = 60/177 (33%), Gaps = 23/177 (12%)

Query: 221 ELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLV 279
           E+P+G+       L L   +      I    F  +  L+V+ L    +  +     + L 
Sbjct: 68  EVPQGIP-SNTRYLNLMENNIQ---MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA 123

Query: 280 NLQTLCLDYSTLGDIT--IIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFH 336
           +L TL L  + L  I       L  L  L L  + I   P     ++  L  LDL     
Sbjct: 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK 183

Query: 337 LKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEI 393
           L+ I+         L+ L +  C               +   +  L PL  L  LE+
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMC---------------NIKDMPNLTPLVGLEELEM 225

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 10/119 (8%)

Query: 247 IPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLDYSTLGDITIIG-----KL 300
           IP   F  + +L+ + L N  + S+PS   + + +L  L L    L  +  I       L
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL--GELKKLEYISEGAFEGL 195

Query: 301 KNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359
            NL+ L+L   +I + P  L  L  L  L+++   H   I P      + L++L++ N 
Sbjct: 196 FNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNS 252

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 6/107 (5%)

Query: 256 RELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI--TIIGKLKNLEILSLIESDI 313
            +   V  T   L  +P  I    N + L L  + +  I       L +LE+L L  + I
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 314 VEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359
            +        L  L  L+L +   L VI        ++L EL++ N 
Sbjct: 112 RQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNN 157

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.1 bits (156), Expect = 2e-10
 Identities = 84/531 (15%), Positives = 174/531 (32%), Gaps = 95/531 (17%)

Query: 221 ELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDL-TNMQLFSL-PSSIDLL 278
           ++P+ L     E LLLS  +      +    F  + +L++++L +     ++   +   L
Sbjct: 18  QVPQVL--NTTERLLLSFNYIR---TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL 72

Query: 279 VNLQTLCLDYSTLGDI--TIIGKLKNLEILSLIE---SDIVEFPEELGKLTKLRLLDLTN 333
            NL+ L L  S +  +       L +L  L L     SD V        L  L  LDL+ 
Sbjct: 73  PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 334 CFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEI 393
                +           L+ +  S+  +              +  L+ L     L+   +
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQI----------FLVCEHELEPL-QGKTLSFFSL 181

Query: 394 AVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKL 453
           A  +  +     + + +  F+ +                        L +      +   
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNM--------------------VLEILDVSGNGWTVDIT 221

Query: 454 KLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGF-----SQLKHLLVQNNPDL 508
                 I   +   +    ++    F    + + + D   F     S ++HL + +    
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGF--HNIKDPDQNTFAGLARSSVRHLDLSHG--F 277

Query: 509 LFIVDSREIVDCDAFPLLELLSL-------------QNLINLKRI-----CVDRLSTESF 550
           +F ++SR          L++L+L               L NL+ +      +  L + +F
Sbjct: 278 VFSLNSRVFET---LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334

Query: 551 SELRTMKVENCDELSN--IFVLS--TTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDN 606
             L  +   +   L    I ++   T K L  LQ +  ++ N +  I  I    PD+  +
Sbjct: 335 YGLPKVAYID---LQKNHIAIIQDQTFKFLEKLQTLD-LRDNALTTIHFIPS-IPDIFLS 389

Query: 607 NNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVK 666
            N +  +    +    +           E +  ++    F  +  +P+L+ L L +    
Sbjct: 390 GNKLVTLPKINLTANLI--------HLSENRLENLDILYFLLR--VPHLQILILNQNRFS 439

Query: 667 SIWHNQTPCCFQRLTRLIVWGCQ---KLKFMFYASMIKSLEQLQHLEIRNC 714
           S   +QTP     L +L +         +      + + L  LQ L + + 
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 7e-04
 Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 5/158 (3%)

Query: 228 CPQLELLLLSSEH--SSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTL 284
            P LE L L       + +  +    F G+  L+V+ L +  L SLP  +   L  L+ L
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509

Query: 285 CLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNV 344
            L+ + L  ++      NLEIL +  + ++    ++     L +LD+T+   +     + 
Sbjct: 510 SLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELST 567

Query: 345 IASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDEL 382
             ++     + ++    +       S S  S  SL   
Sbjct: 568 FINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE 605

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.7 bits (153), Expect = 3e-10
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 5/108 (4%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIES 311
            T + ++  +    + + S+   ++ L NL  +    + L DIT +  L  L  + +  +
Sbjct: 42  QTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 100

Query: 312 DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359
            I +    L  LT L  L L N   +  I P  + + T L  L +S+ 
Sbjct: 101 QIADIT-PLANLTNLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSN 144

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.4 bits (142), Expect = 5e-09
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 21/143 (14%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIES 311
            +G+  L+ +   N      P  +  L  L+ L +  + + DI+++ KL NLE L    +
Sbjct: 152 LSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 209

Query: 312 DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSS 371
            I +    LG LT L  L L      ++     +AS T L +L ++N  +          
Sbjct: 210 QISDIT-PLGILTNLDELSLNGN---QLKDIGTLASLTNLTDLDLANNQIS--------- 256

Query: 372 SKKSKASLDELMPLPRLTTLEIA 394
                 +L  L  L +LT L++ 
Sbjct: 257 ------NLAPLSGLTKLTELKLG 273

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 4e-08
 Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 20/142 (14%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIES 311
            +G+ +L  + L   Q+ ++   +  L  L  L L+ + L DI+ I  LKNL  L+L  +
Sbjct: 261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 319

Query: 312 DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSS 371
           +I +    +  LTKL+ L   N    KV   + +A+ T +  L   +  +          
Sbjct: 320 NISDI-SPVSSLTKLQRLFFYNN---KVSDVSSLANLTNINWLSAGHNQIS--------- 366

Query: 372 SKKSKASLDELMPLPRLTTLEI 393
                  L  L  L R+T L +
Sbjct: 367 ------DLTPLANLTRITQLGL 382

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 273 SSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLT 332
            +   L       L  + + D      L  +  L      I    + +  L  L  ++ +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS-IDGVEYLNNLTQINFS 76

Query: 333 NCFHLKVIAPNVIASFTRLEELYMSNC 359
           N   L  I P  + + T+L ++ M+N 
Sbjct: 77  NN-QLTDITP--LKNLTKLVDILMNNN 100

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 5e-05
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 8/138 (5%)

Query: 221 ELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVN 280
           ++        L  L L   + S   +I     + + +L+ +   N ++  + S +  L N
Sbjct: 301 DISPISNLKNLTYLTLYFNNIS---DIS--PVSSLTKLQRLFFYNNKVSDVSS-LANLTN 354

Query: 281 LQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVI 340
           +  L   ++ + D+T +  L  +  L L +      P        + + +        +I
Sbjct: 355 INWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNY--KANVSIPNTVKNVTGALI 412

Query: 341 APNVIASFTRLEELYMSN 358
           AP  I+      E  ++ 
Sbjct: 413 APATISDGGSYTEPDITW 430

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.6 bits (153), Expect = 4e-10
 Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 22/150 (14%)

Query: 220 GELPEGLECPQLELLLLSSEHSSVDVN-----IPQRFFTGMRELKVVDLTNMQLF-SLPS 273
             +P   +C  L+ L +S        N       +   T   ELK++++++ Q    +P 
Sbjct: 214 TGIPFLGDCSALQHLDISG-------NKLSGDFSRAIST-CTELKLLNISSNQFVGPIPP 265

Query: 274 SIDLLVNLQTLCLDYSTL-GDI--TIIGKLKNLEILSLIESDIV-EFPEELGKLTKLRLL 329
               L +LQ L L  +   G+I   + G    L  L L  +      P   G  + L  L
Sbjct: 266 LP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

Query: 330 DLTNCFHLK-VIAPNVIASFTRLEELYMSN 358
            L++  +    +  + +     L+ L +S 
Sbjct: 324 ALSSN-NFSGELPMDTLLKMRGLKVLDLSF 352

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.9 bits (146), Expect = 3e-09
 Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 25/168 (14%)

Query: 217 SSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSID 276
              G++  GL+   LE+L LS+   S    +      G  ELK + ++  ++ S    + 
Sbjct: 139 DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI-SGDVDVS 197

Query: 277 LLVNLQTLCLDYSTL-GDITIIGKLKNLEILSLIESDIV-EFPEELGKLTKLRLLDL--- 331
             VNL+ L +  +     I  +G    L+ L +  + +  +F   +   T+L+LL++   
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257

Query: 332 --------TNCFHLKV-----------IAPNVIASFTRLEELYMSNCF 360
                        L+            I   +  +   L  L +S   
Sbjct: 258 QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.2 bits (144), Expect = 6e-09
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 25/152 (16%)

Query: 220 GELPEGL-ECPQLELLLLSSEHSSVDVN-----IPQRFFTGMRELKVVDLTNMQLF-SLP 272
           G++P  L  C +L  L LS        N     IP      + +L+ + L    L   +P
Sbjct: 408 GKIPPTLSNCSELVSLHLSF-------NYLSGTIPS-SLGSLSKLRDLKLWLNMLEGEIP 459

Query: 273 SSIDLLVNLQTLCLDYSTL-GDI-TIIGKLKNLEILSLIESDIV-EFPEELGKLTKLRLL 329
             +  +  L+TL LD++ L G+I + +    NL  +SL  + +  E P+ +G+L  L +L
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519

Query: 330 DLTNCF---HLKVIAPNVIASFTRLEELYMSN 358
            L+N     ++    P  +     L  L ++ 
Sbjct: 520 KLSNNSFSGNI----PAELGDCRSLIWLDLNT 547

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.9 bits (133), Expect = 9e-08
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 258 LKVVDLTNMQLF----SLPSSIDLLVNLQTLCLDYSTL-GDITIIGKLKNLEILSLIE-- 310
           +  +DL++  L     ++ SS+  L  L++L L  S + G ++      +L  L L    
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 311 -SDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359
            S  V     LG  + L+ L++++         +       LE L +S  
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 1e-06
 Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 33/170 (19%)

Query: 220 GELPEGLECPQLELLLLSSE------------------------HSSVDVNIPQRFFTGM 255
           G +        L  L LS                           +++D          +
Sbjct: 91  GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150

Query: 256 RELKVVDLTNMQLF-SLPSSIDL---LVNLQTLCLDYSTL-GDITIIGKLKNLEILSLIE 310
             L+V+DL+   +  +      L      L+ L +  + + GD+  + +  NLE L +  
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSS 209

Query: 311 SDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359
           ++     P  LG  + L+ LD++    L       I++ T L+ L +S+ 
Sbjct: 210 NNFSTGIP-FLGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSN 257

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 8/134 (5%)

Query: 234 LLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTL-G 292
           + LSS+  +V  +        +  L+ + L+N  +    S      +L +L L  ++L G
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG 114

Query: 293 DITI---IGKLKNLEILSLIES--DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIA- 346
            +T    +G    L+ L++  +  D         KL  L +LDL+            +  
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174

Query: 347 -SFTRLEELYMSNC 359
                L+ L +S  
Sbjct: 175 DGCGELKHLAISGN 188

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 8e-04
 Identities = 23/167 (13%), Positives = 54/167 (32%), Gaps = 21/167 (12%)

Query: 204 DALKKCYAISWIDSSG----GELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELK 259
             L  C ++ W+D +     G +P  +     +   +++   +    +  +     +E  
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAM---FKQSGKIAANFIAGKRYVYIKNDGMKKECH 588

Query: 260 VVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTL-GDI-TIIGKLKNLEILSL----IESDI 313
                          ++ L       +      G          ++  L +    +   I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

Query: 314 VEFPEELGKLTKLRLLDLT-NCFHLK-VIAPNVIASFTRLEELYMSN 358
              P+E+G +  L +L+L  N   +   I P+ +     L  L +S+
Sbjct: 649 ---PKEIGSMPYLFILNLGHN--DISGSI-PDEVGDLRGLNILDLSS 689

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 4e-10
 Identities = 21/156 (13%), Positives = 54/156 (34%), Gaps = 17/156 (10%)

Query: 217 SSGGELPEGLE-CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP--- 272
                     +    L  + + +  +     +P  F   + E++++++   +  S     
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTK--LPT-FLKALPEMQLINVACNRGISGEQLK 292

Query: 273 ------SSIDLLVNLQTLCLDYSTLGDITI---IGKLKNLEILSLIESDIVEFPEELGKL 323
                 +   +   +Q + + Y+ L    +   + K+K L +L  + + +       G  
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE 352

Query: 324 TKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359
            KL  L+L     +  I  N      ++E L  ++ 
Sbjct: 353 IKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHN 387

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 5e-09
 Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 14/156 (8%)

Query: 215 IDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSS 274
           +      L +     +++++ +   +      +       M++L +++    QL     +
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKT-FPVETSLQ-KMKKLGMLECLYNQLEGKLPA 348

Query: 275 IDLLVNLQTLCLDYSTLGDI--TIIGKLKNLEILSLIESDIVEFPE--ELGKLTKLRLLD 330
               + L +L L Y+ + +I     G  + +E LS   + +   P   +   ++ +  +D
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAID 408

Query: 331 LTN-------CFHLKVIAPNVIASFTRLEELYMSNC 359
            +          +   +          +  + +SN 
Sbjct: 409 FSYNEIGSVDGKNFDPL-DPTPFKGINVSSINLSNN 443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 7e-09
 Identities = 16/159 (10%), Positives = 48/159 (30%), Gaps = 28/159 (17%)

Query: 218 SGGELPEGL-ECPQLELLLLSSEHSSVDVN-----IPQRFFTGMRELKVVDLTNMQLFSL 271
               +   L +  +L +L           N     +P   F    +L  ++L   Q+  +
Sbjct: 318 KTFPVETSLQKMKKLGMLECLY-------NQLEGKLPA--FGSEIKLASLNLAYNQITEI 368

Query: 272 PSSI-DLLVNLQTLCLDY---STLGDITIIGKLKNLEILSL--------IESDIVEFPEE 319
           P++       ++ L   +     + +I     +  +  +             +       
Sbjct: 369 PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428

Query: 320 LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
             K   +  ++L+N   +      + ++ + L  + +  
Sbjct: 429 PFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMG 466

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 5e-08
 Identities = 24/160 (15%), Positives = 47/160 (29%), Gaps = 28/160 (17%)

Query: 220 GELPEGLE-CPQLELLLLSSEHSSVDVN----IPQRFFTGMRELKVVDLTN--------M 266
             L         +  + LS+       N     P+  F+    L  ++L           
Sbjct: 423 DPLDPTPFKGINVSSINLSN-------NQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 267 QLFSLPSSIDLLVNLQTLCLDY---STLGDITIIGKLKNLEILSLIESDIVEFPEELGKL 323
            L     +      L ++ L +   + L D      L  L  + L  +   +FP +    
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNS 535

Query: 324 TKLRLLDLTNCFHLKV-----IAPNVIASFTRLEELYMSN 358
           + L+   + N    +        P  I     L +L + +
Sbjct: 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 21/165 (12%), Positives = 46/165 (27%), Gaps = 25/165 (15%)

Query: 220 GELPEGL-ECPQLELLLLSS------EHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP 272
           G +P+ + +  +LE+L L S      E       I        ++   +      +   P
Sbjct: 95  GRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDP 154

Query: 273 SSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLT 332
                 +    +  D                  +  + ++I    + + +LTKLR   + 
Sbjct: 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMG 214

Query: 333 NCFHLKVIA------------------PNVIASFTRLEELYMSNC 359
           N   +                           +   L ++ + NC
Sbjct: 215 NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 19/139 (13%), Positives = 44/139 (31%), Gaps = 15/139 (10%)

Query: 228 CPQLELLLLSSEH-SSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCL 286
              L  + L     + +  +      T +  L  +DL+       P+       L+   +
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDF---RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543

Query: 287 DY-------STLGDI-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLK 338
                     TL +    I    +L  L +  +DI +  E++     + +LD+ +     
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDN-PNI 600

Query: 339 VIAPNVIASFTRLEELYMS 357
            I  + +  +       + 
Sbjct: 601 SIDLSYVCPYIEAGMYMLF 619

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.0 bits (148), Expect = 6e-10
 Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 19/165 (11%)

Query: 247 IPQRFFTGMRELKVVDLTNMQLFSLPSSIDL--LVNLQTLCLDYSTLGDIT--IIGKLKN 302
           +PQ   +    L   DL++  L  L +      L NL +L L ++ L  I+      + N
Sbjct: 33  VPQSLPSYTALL---DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89

Query: 303 LEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFV 361
           L  L L  + +    E     L  L +L L N  H+ V+  N      +L++LY+S   +
Sbjct: 90  LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQI 148

Query: 362 EWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFF 406
                 E          + +   LP+L  L+++      LP    
Sbjct: 149 SR-FPVE---------LIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 11/134 (8%)

Query: 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLD 287
             L  LLLS  H +    I    F  +  L+ +DL++  L +L   +   L  L+ L L 
Sbjct: 64  TNLHSLLLSHNHLN---FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120

Query: 288 YSTLGDIT--IIGKLKNLEILSLIESDIVEFPEE----LGKLTKLRLLDLTNCFHLKVIA 341
            + +  +       +  L+ L L ++ I  FP E      KL KL LLDL++   LK + 
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLP 179

Query: 342 PNVIASFTRLEELY 355
              +       +  
Sbjct: 180 LTDLQKLPAWVKNG 193

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 7e-10
 Identities = 30/235 (12%), Positives = 67/235 (28%), Gaps = 16/235 (6%)

Query: 246 NIPQRFFTGMRELKVVDLTNMQLFSLPSS--IDLLVNLQTLCLDYSTLGDITIIGKLKNL 303
            +          ++ +DL   ++ ++  +        L+ L L Y+ + D+        L
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 304 EILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN----- 358
           + L L  + +     E      +  + L N   L +I    +     LE   +       
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLI-EKALRFSQNLEHFDLRGNGFHC 251

Query: 359 -----CFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVR--ELE 411
                 F + +     +     K +          T           LP  F  R   L+
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311

Query: 412 RFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQ 466
           R +  +          L  +    +R   +    +  R +  ++  +      L+
Sbjct: 312 RKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLE 366

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 17/148 (11%), Positives = 44/148 (29%), Gaps = 22/148 (14%)

Query: 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLD 287
            + ++  ++                    +K +DL+   L  +  + +     L+ L L 
Sbjct: 10  NRYKIEKVTDSSLK---QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 288 YSTLGDITIIGKLKNLEILSLIESDIVEFPE-----------------ELGKLTKLRLLD 330
            + L +   +  L  L  L L  + + E                       +    + + 
Sbjct: 67  SNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIY 126

Query: 331 LTNCFHLKVIAPNVIASFTRLEELYMSN 358
           L N   + ++        +R++ L +  
Sbjct: 127 LANN-KITMLRDLDEGCRSRVQYLDLKL 153

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.4 bits (147), Expect = 7e-10
 Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 4/115 (3%)

Query: 246 NIPQRFFTGMRELKVVDLTNMQLFSLP--SSIDLLVNLQTLCLDYSTLGDITIIGKLKNL 303
            +          ++ +DL   ++ ++           L+ L L Y+ + D+        L
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 304 EILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
           + L L  + +     E      +  + L N   L +I    +     LE   +  
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLI-EKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 17/148 (11%), Positives = 44/148 (29%), Gaps = 22/148 (14%)

Query: 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLD 287
            + ++  ++                    +K +DL+   L  +  + +     L+ L L 
Sbjct: 10  NRYKIEKVTDSSLK---QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 288 YSTLGDITIIGKLKNLEILSLIESDIVEFPE-----------------ELGKLTKLRLLD 330
            + L +   +  L  L  L L  + + E                       +    + + 
Sbjct: 67  SNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIY 126

Query: 331 LTNCFHLKVIAPNVIASFTRLEELYMSN 358
           L N   + ++        +R++ L +  
Sbjct: 127 LANN-KITMLRDLDEGCRSRVQYLDLKL 153

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 24/140 (17%)

Query: 270 SLPSSIDLLVNLQTLCLDYSTLGDI--TIIGKLKNLEILSLIESDIVEFP-EELGKLTKL 326
           ++          +   +  S+L     ++     N++ L L  + + +    +L   TKL
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 327 RLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLP 386
            LL+L++   L       + S + L  L ++N                    + EL+  P
Sbjct: 61  ELLNLSSN-VLYETLD--LESLSTLRTLDLNNN------------------YVQELLVGP 99

Query: 387 RLTTLEIAVENDNALPEGFF 406
            + TL  A  N + +     
Sbjct: 100 SIETLHAANNNISRVSCSRG 119

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 17/139 (12%), Positives = 46/139 (33%), Gaps = 7/139 (5%)

Query: 221 ELPEGLECPQLELLLLSSEH-SSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLV 279
           ++   +   +L+ L LSS   + +        F     +  + L N +L  +  ++    
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNKLVLIEKALRFSQ 237

Query: 280 NLQTLCLDYSTLGDITI-IGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLK 338
           NL+   L  +     T+     KN  + ++ +  + +   +  +   +  L     +  +
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

Query: 339 VIAPNVIASFTRLEELYMS 357
            +          L   +  
Sbjct: 298 DLPAPFADRLIALGHHHHH 316

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.5 bits (149), Expect = 8e-10
 Identities = 23/151 (15%), Positives = 61/151 (40%), Gaps = 8/151 (5%)

Query: 212 ISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL 271
           I           E +     +++   +        +P       R++++++L ++Q+  +
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIEEI 90

Query: 272 PSSI-DLLVNLQTLCLDYSTLGDI--TIIGKLKNLEILSLIESDIVEFPEEL-GKLTKLR 327
            +        +Q L + ++ +  +   +   +  L +L L  +D+   P  +     KL 
Sbjct: 91  DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150

Query: 328 LLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
            L ++N  +L+ I  +   + T L+ L +S+
Sbjct: 151 TLSMSNN-NLERIEDDTFQATTSLQNLQLSS 180

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.6 bits (139), Expect = 1e-08
 Identities = 55/368 (14%), Positives = 115/368 (31%), Gaps = 71/368 (19%)

Query: 221 ELPEGL--ECPQLELLLLSSEHSSVDVN----IPQRFFTGMRELKVVDLTNMQLFSLPSS 274
            LP  +    P L +L+L         N    +P+  F    +L  + ++N  L  +   
Sbjct: 113 YLPPHVFQNVPLLTVLVLER-------NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 165

Query: 275 I-DLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTN 333
                 +LQ L L  + L  +  +  + +L   ++  + +            +  LD ++
Sbjct: 166 TFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASH 220

Query: 334 CFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEI 393
              + V+   V      L  L + +  +                    L+  P L  +++
Sbjct: 221 N-SINVVRGPV---NVELTILKLQHNNLT---------------DTAWLLNYPGLVEVDL 261

Query: 394 AVEND-NALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLK 452
           +  N+   +    F  +++R + L           +S +  R+   +       +L++L 
Sbjct: 262 S-YNELEKIMYHPF-VKMQRLERL----------YISNN--RLVALNLYGQPIPTLKVLD 307

Query: 453 LKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNP------ 506
           L  N      R      ++E L LD      N +  L       LK+L + +N       
Sbjct: 308 LSHNHLLHVERNQPQFDRLENLYLD-----HNSIVTLKLSTHHTLKNLTLSHNDWDCNSL 362

Query: 507 -------DLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVE 559
                      + D+ +    D      L   ++        +  ++  S  E       
Sbjct: 363 RALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQG 422

Query: 560 NCDELSNI 567
            C     I
Sbjct: 423 RCSATDTI 430

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.8 bits (148), Expect = 9e-10
 Identities = 23/151 (15%), Positives = 61/151 (40%), Gaps = 8/151 (5%)

Query: 212 ISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL 271
           I           E +     +++   +        +P       R++++++L ++Q+  +
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIEEI 84

Query: 272 PSSI-DLLVNLQTLCLDYSTLGDI--TIIGKLKNLEILSLIESDIVEFPEEL-GKLTKLR 327
            +        +Q L + ++ +  +   +   +  L +L L  +D+   P  +     KL 
Sbjct: 85  DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144

Query: 328 LLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
            L ++N  +L+ I  +   + T L+ L +S+
Sbjct: 145 TLSMSNN-NLERIEDDTFQATTSLQNLQLSS 174

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.4 bits (134), Expect = 5e-08
 Identities = 49/290 (16%), Positives = 102/290 (35%), Gaps = 50/290 (17%)

Query: 221 ELPEGL--ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DL 277
            LP  +    P L +L+L     S   ++P+  F    +L  + ++N  L  +       
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLS---SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163

Query: 278 LVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHL 337
             +LQ L L  + L  +  +  + +L   ++  + +            +  LD ++   +
Sbjct: 164 TTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHN-SI 217

Query: 338 KVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEN 397
            V+   V      L  L + +  +                    L+  P L  ++++  N
Sbjct: 218 NVVRGPV---NVELTILKLQHNNLT---------------DTAWLLNYPGLVEVDLS-YN 258

Query: 398 D-NALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLN 456
           +   +    FV+ ++R + L           +S +  R+   +       +L++L L  N
Sbjct: 259 ELEKIMYHPFVK-MQRLERL----------YISNN--RLVALNLYGQPIPTLKVLDLSHN 305

Query: 457 WKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNP 506
                 R      ++E L LD      N +  L       LK+L + +N 
Sbjct: 306 HLLHVERNQPQFDRLENLYLD-----HNSIVTLKLSTHHTLKNLTLSHND 350

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 9e-10
 Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 20/142 (14%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIES 311
              +  +  +   N  + S+   I  L N+  L L+ + L DI  +  LKNL  L L E+
Sbjct: 42  QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN 100

Query: 312 DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSS 371
            + +    L  L KL+ L L +   +  I    +    +LE LY+ N  +          
Sbjct: 101 KVKDL-SSLKDLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKIT--------- 147

Query: 372 SKKSKASLDELMPLPRLTTLEI 393
                  +  L  L +L TL +
Sbjct: 148 ------DITVLSRLTKLDTLSL 163

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 26/172 (15%)

Query: 224 EGLE-CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQ 282
           +G++  P +  L L+    +   +I       ++ L  + L   ++  L SS+  L  L+
Sbjct: 62  QGIQYLPNVTKLFLNGNKLT---DIKP--LANLKNLGWLFLDENKVKDL-SSLKDLKKLK 115

Query: 283 TLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAP 342
           +L L+++ + DI  +  L  LE L L  + I +    L +LTKL  L L +   +  I P
Sbjct: 116 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP 173

Query: 343 NVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIA 394
             +A  T+L+ LY+S   +                 L  L  L  L  LE+ 
Sbjct: 174 --LAGLTKLQNLYLSKNHIS---------------DLRALAGLKNLDVLELF 208

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 29/150 (19%), Positives = 63/150 (42%), Gaps = 15/150 (10%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIES 311
              +++LK + L +  +  + + +  L  L++L L  + + DIT++ +L  L+ LSL ++
Sbjct: 108 LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 166

Query: 312 DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSS 371
            I +    L  LTKL+ L L+   H+  +    +A    L+ L + +             
Sbjct: 167 QISDI-VPLAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLELFSQEC---------- 212

Query: 372 SKKSKASLDELMPLPRLTTLEIAVENDNAL 401
             K       L+    +   + ++     +
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGSLVTPEII 242

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 19/121 (15%)

Query: 273 SSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLT 332
            S D         L   ++ D     +L +++ +    SDI    + +  L  +  L L 
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLN 76

Query: 333 NCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLE 392
               L  I P  +A+   L  L++    V+                L  L  L +L +L 
Sbjct: 77  GN-KLTDIKP--LANLKNLGWLFLDENKVK---------------DLSSLKDLKKLKSLS 118

Query: 393 I 393
           +
Sbjct: 119 L 119

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 46/335 (13%), Positives = 104/335 (31%), Gaps = 26/335 (7%)

Query: 247 IPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLDYSTLGDITIIGKLKNLEI 305
           +       + +L+++ +++ ++  L  S+      L+ L L ++ L  I+      NL+ 
Sbjct: 36  LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS-CHPTVNLKH 94

Query: 306 LSLIESDIVEFPE--ELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEW 363
           L L  +     P   E G +++L+ L L+   HL+  +   IA     + L +       
Sbjct: 95  LDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKSSVLPIAHLNISKVLLVLGET-YG 152

Query: 364 KVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFE 423
           + ED       +  SL  + P  +     + V             +              
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 424 PPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVK 483
              + +         + +     S   +   +   T+    +  ++    L    F    
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272

Query: 484 NILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQ--NLINLKRIC 541
             L  L      Q+   +       ++          + F  + + +        +  +C
Sbjct: 273 TSLKALS---IHQVVSDVFGFPQSYIY----------EIFSNMNIKNFTVSGTRMVHMLC 319

Query: 542 VDRLSTE-----SFSELRTMKVENCDELSNIFVLS 571
             ++S       S + L     ENC  L+ +  L 
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 20/109 (18%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 252 FTGMRELKVVDLTNMQL-FSLPSSI-DLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLI 309
            T M+ L+ +D++   + +           +L +L +  + L D         +++L L 
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH 429

Query: 310 ESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
            + I   P+++ KL  L+ L++ +   LK +   +    T L+++++  
Sbjct: 430 SNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.3 bits (115), Expect = 9e-06
 Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 6/136 (4%)

Query: 230 QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDY 288
            L+ L +    S V        +     + + + T      +       +     L    
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333

Query: 289 STLGDIT--IIGKLKNLEILSLIESDIVEFPEELG---KLTKLRLLDLTNCFHLKVIAPN 343
           + L D      G L  LE L L  + + E  +      ++  L+ LD++           
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393

Query: 344 VIASFTRLEELYMSNC 359
             +    L  L MS+ 
Sbjct: 394 DCSWTKSLLSLNMSSN 409

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 62/479 (12%), Positives = 134/479 (27%), Gaps = 97/479 (20%)

Query: 260 VVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEE 319
           +VD +   L  +P   DL      L +  +          +  L               +
Sbjct: 4   LVDRSKNGLIHVPK--DLSQKTTILNISQN---------YISELW------------TSD 40

Query: 320 LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASL 379
           +  L+KLR+L +++   ++ +  +V      LE L +S+                    L
Sbjct: 41  ILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN------------------KL 81

Query: 380 DELM--PLPRLTTLEIAVENDNALPEGFFVRELERFKIL------IGDRSFEPPVILSKD 431
            ++   P   L  L+++    +ALP       + + K L      +   S  P   L+  
Sbjct: 82  VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNIS 141

Query: 432 WFRISRSHFLILDH-----QSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNIL 486
              +               Q      L + + T           V+ +   +   +K +L
Sbjct: 142 KVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201

Query: 487 FELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNL-------INLKR 539
            +     F  +   L  N       +++ E        +L+L+    +       + L+ 
Sbjct: 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG 261

Query: 540 ICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGE 599
               R    S + L+ + +         F  S    + S   I     +  + +      
Sbjct: 262 QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV------ 315

Query: 600 EPDVVDNNNAIENIEFAQIRYLSLGN--LPELKSFCCEVKGPSMPPSLFNGKVVLPNLEA 657
              +  +         +   +L   N  L +                       L  LE 
Sbjct: 316 -HMLCPSK-------ISPFLHLDFSNNLLTDT------------VFENCGH---LTELET 352

Query: 658 LELCEINVKSIWHNQTPCCFQRLTRLIVWGCQ--KLKFMFYASMIKSLEQLQHLEIRNC 714
           L L    +K +  ++      ++  L         + +          + L  L + + 
Sbjct: 353 LILQMNQLKEL--SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 246 NIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLDYSTLGDI--TIIGKLKN 302
           ++    F    EL+V+DL+  ++ ++       L +L TL L  + +  +       L +
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 303 LEILSLIESDIVEFPEEL-GKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359
           L+ L  +E+++        G L  L+ L++ +        P   ++ T LE L +S+ 
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLD 287
           P+L++L LS         I    +  +  L  + LT   + SL       L +LQ L   
Sbjct: 52  PELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 288 YSTLGDIT--IIGKLKNLEILSLIESDIVEFPEE--LGKLTKLRLLDLTNCFHLKVIAPN 343
            + L  +    IG LK L+ L++  + I  F        LT L  LDL++   ++ I   
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCT 167

Query: 344 VIASFTRLEELYMS 357
            +    ++  L +S
Sbjct: 168 DLRVLHQMPLLNLS 181

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 22/183 (12%)

Query: 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLD 287
           P LE L L+    S    +    F  +  L+ + L + +L  +P  +   L NL  L + 
Sbjct: 56  PHLEELELNENIVS---AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112

Query: 288 YSTLGDI--TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNV 344
            + +  +   +   L NL+ L + ++D+V         L  L  L L  C +L  I    
Sbjct: 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEA 171

Query: 345 IASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEND-NALPE 403
           ++    L  L + +  +             +         L RL  LEI+     + +  
Sbjct: 172 LSHLHGLIVLRLRHLNI-------------NAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218

Query: 404 GFF 406
              
Sbjct: 219 NCL 221

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 29/145 (20%), Positives = 61/145 (42%), Gaps = 10/145 (6%)

Query: 221 ELPEGL--ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DL 277
            +P G+      L  L +S     +   +    F  +  LK +++ +  L  +       
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVI---LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 278 LVNLQTLCLDYSTLGDI--TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNC 334
           L +L+ L L+   L  I    +  L  L +L L   +I    +    +L +L++L++++ 
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 335 FHLKVIAPNVIASFTRLEELYMSNC 359
            +L  + PN +     L  L +++C
Sbjct: 211 PYLDTMTPNCLYGLN-LTSLSITHC 234

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.2 bits (141), Expect = 8e-09
 Identities = 63/322 (19%), Positives = 121/322 (37%), Gaps = 50/322 (15%)

Query: 221 ELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLV 279
            +PEG+   +  LL L          + Q  F     L+ ++L    + ++     + L 
Sbjct: 25  AVPEGIP-TETRLLDLGKNRIK---TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF 80

Query: 280 NLQTLCLDYSTLGDIT--IIGKLKNLEILSLIESDIVEFPEEL-GKLTKLRLLDLTNCFH 336
           NL+TL L  + L  I   +   L NL  L + E+ IV   + +   L  L+ L++ +   
Sbjct: 81  NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-D 139

Query: 337 LKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVE 396
           L  I+    +    LE+L +  C +   +  E             L  L  L  L +   
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEA------------LSHLHGLIVLRLRHL 186

Query: 397 NDNALPEGFFVRELERFKILIGDRSFEPPV-ILSKDWFRISRSHFLILDHQSLRMLKLKL 455
           N NA+ +  F + L R K+L  + S  P +  ++ +         L + H +L  +    
Sbjct: 187 NINAIRDYSF-KRLYRLKVL--EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243

Query: 456 NWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSR 515
                    ++ +  + +L L       N +  ++     +L  L        + +V  +
Sbjct: 244 ---------VRHLVYLRFLNLS-----YNPISTIEGSMLHELLRLQE------IQLVGGQ 283

Query: 516 -EIVDCDAF---PLLELLSLQN 533
             +V+  AF     L +L++  
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSG 305

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 50/288 (17%), Positives = 95/288 (32%), Gaps = 57/288 (19%)

Query: 259 KVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGK-----LKNLEILSLIESDI 313
           +V      ++  +PS  DL  N   L    +    + +I K       +LE + + ++D+
Sbjct: 12  RVFLCQESKVTEIPS--DLPRNAIELRFVLT---KLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 314 VEFPEE--LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSS 371
           +E  E      L KL  + +    +L  I P    +   L+ L +SN  ++         
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK--------- 117

Query: 372 SKKSKASLDELM--PLPRLTTLEIAVENDN--ALPEGFFVRELERFKILIGDRSFEPPVI 427
                  L ++      +   L+I  +N N   +    FV       IL  +++      
Sbjct: 118 ------HLPDVHKIHSLQKVLLDIQ-DNINIHTIERNSFVGLSFESVILWLNKN------ 164

Query: 428 LSKDWFRISRSHFLILDHQSLRMLKLKLN--WKTICLRKLQGIRKVEYLCLDKFQGVKNI 485
                  I   H    +   L  L L  N   + +      G      L +      +  
Sbjct: 165 ------GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS-----RTR 213

Query: 486 LFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQN 533
           +  L + G   LK L  ++  +L      +++   +    L   SL  
Sbjct: 214 IHSLPSYGLENLKKLRARSTYNL------KKLPTLEKLVALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 247 IPQRFFTGMRELKVVDLTNMQLFSL--PSSIDLLVNLQTLCLDYSTLGDITII-----GK 299
           I +  F+G  +L+ ++++   +  +        L  L  + ++ +   ++  I       
Sbjct: 45  IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN--NLLYINPEAFQN 102

Query: 300 LKNLEILSLIESDIVEFPEEL-GKLTKLRLLDLTNCFHLKVIAPNVIASFT-RLEELYMS 357
           L NL+ L +  + I   P+       +  LLD+ +  ++  I  N     +     L+++
Sbjct: 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162

Query: 358 NC 359
             
Sbjct: 163 KN 164

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 24/135 (17%), Positives = 54/135 (40%), Gaps = 7/135 (5%)

Query: 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDL-LVNLQTLCLD 287
           P+L  + +    ++  + I    F  +  L+ + ++N  +  LP    +  +    L + 
Sbjct: 79  PKLHEIRIE--KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136

Query: 288 Y----STLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPN 343
                 T+   + +G      IL L ++ I E        T+L  L+L++  +L+ +  +
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND 196

Query: 344 VIASFTRLEELYMSN 358
           V    +    L +S 
Sbjct: 197 VFHGASGPVILDISR 211

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 11/134 (8%)

Query: 229 PQLELLLLSSEH-SSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLD 287
            +L  L L     + + V         +  L  +DL++ QL SLP     L  L  L + 
Sbjct: 55  TRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108

Query: 288 YSTLGDI--TIIGKLKNLEILSLIESDIVEFPEEL-GKLTKLRLLDLTNCFHLKVIAPNV 344
           ++ L  +    +  L  L+ L L  +++   P  L     KL  L L N  +L  +   +
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGL 167

Query: 345 IASFTRLEELYMSN 358
           +     L+ L +  
Sbjct: 168 LNGLENLDTLLLQE 181

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 5/113 (4%)

Query: 247 IPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLDYSTLGDITIIGKLKNLEI 305
           +P         L    L+   L++   +       L  L LD + L  + + G L  L  
Sbjct: 25  LPPDLPKDTTIL---HLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81

Query: 306 LSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
           L L  + +   P     L  L +LD++    L  +    +     L+ELY+  
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKG 133

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 246 NIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI-TIIGKLKNLE 304
                       L  ++L   +L  L      L  L TL L ++ L  +  +   L  L 
Sbjct: 45  TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALT 103

Query: 305 ILSLIESDIVEFPEEL-GKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
           +L +  + +   P      L +L+ L L     LK + P ++    +LE+L ++N
Sbjct: 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLAN 157

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 258 LKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI--TIIGKLKNLEILSLIESDIVE 315
              V+     L +LP  +    +   L L  + L       +     L  L+L  +++ +
Sbjct: 12  HLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK 69

Query: 316 FPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359
              + G L  L  LDL++   L+ + P +  +   L  L +S  
Sbjct: 70  LQVD-GTLPVLGTLDLSHN-QLQSL-PLLGQTLPALTVLDVSFN 110

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 246 NIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLDYSTLGDI--TIIGKLKN 302
           ++P + F  + +L+++ L + +L +LP+ I   L NL+TL +  + L  +   +  +L N
Sbjct: 51  SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110

Query: 303 LEILSLIESDIVEFPEEL-GKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
           L  L L  + +   P  +   LTKL  L L     L+ +   V    T L+EL + N
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYN 166

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 8/133 (6%)

Query: 230 QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLDY 288
           +L LL L+         +P   F  ++ L+ + +T+ +L +LP  + D LVNL  L LD 
Sbjct: 62  KLRLLYLNDNKLQ---TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118

Query: 289 STLGDI--TIIGKLKNLEILSLIESDIVEFPEEL-GKLTKLRLLDLTNCFHLKVIAPNVI 345
           + L  +   +   L  L  LSL  +++   P+ +  KLT L+ L L N   LK +     
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAF 177

Query: 346 ASFTRLEELYMSN 358
              T L+ L + N
Sbjct: 178 DKLTELKTLKLDN 190

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.8 bits (140), Expect = 8e-09
 Identities = 53/290 (18%), Positives = 99/290 (34%), Gaps = 36/290 (12%)

Query: 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLD 287
             L+ L +     +  + I    F G+  L ++ L   Q   L +   + L NL+ L L 
Sbjct: 54  QDLQFLKVE--QQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111

Query: 288 YSTLGDITIIG----KLKNLEILSL----IESDIVEFPEELGKLTKLRLLDL-TNCFHLK 338
              L    + G     L +LE+L L    I+   ++       + +  +LDL  N   +K
Sbjct: 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK--IQPASFFLNMRRFHVLDLTFN--KVK 167

Query: 339 VIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEND 398
            I    + +F       +    +  +  +E     +   +  +      +TTL+++    
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT---SITTLDLSGNGF 224

Query: 399 NALPEGFFVRELERFKI--LIGDRSFEPPVILSKDWFR-ISRSHFLILDHQSLRMLKLKL 455
                  F   +   KI  LI   S+          F+      F  L+   ++   L  
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284

Query: 456 NWKTICLRKL-----QGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHL 500
           +     +  L          +E L L      +N + ++D   F  L HL
Sbjct: 285 S----KIFALLKSVFSHFTDLEQLTLA-----QNEINKIDDNAFWGLTHL 325

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.8 bits (140), Expect = 8e-09
 Identities = 30/158 (18%), Positives = 66/158 (41%), Gaps = 14/158 (8%)

Query: 214 WIDSSGGELPEGLECPQLELLLLSSEHSSVDV-------NIPQRFFTGMR--ELKVVDLT 264
           + +S      + +   +++ L+LS+ ++           +     F G+    +K  DL+
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283

Query: 265 NMQLFSLPSSI-DLLVNLQTLCLDYSTLGDI--TIIGKLKNLEILSLIESDIVEFPEEL- 320
             ++F+L  S+     +L+ L L  + +  I       L +L  L+L ++ +      + 
Sbjct: 284 KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343

Query: 321 GKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
             L KL +LDL+   H++ +          L+EL +  
Sbjct: 344 ENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDT 380

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 4e-08
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 258 LKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFP 317
           +  +DL++ +L +LP ++  L  L+ L    + L ++  +  L  L+ L L  + + +  
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA 524

Query: 318 E--ELGKLTKLRLLDLTN 333
               L    +L LL+L  
Sbjct: 525 AIQPLVSCPRLVLLNLQG 542

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 4e-06
 Identities = 36/197 (18%), Positives = 66/197 (33%), Gaps = 19/197 (9%)

Query: 198 WEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRE 257
                E    K       ++    L   L    L+ LL   E       +       MR 
Sbjct: 362 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRA 419

Query: 258 LKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFP 317
             + DL +  L           +++ L L +  L  +  + +L  +  L L  + +   P
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP 479

Query: 318 EELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMS-NCFVEWKVEDEGSSSKKSK 376
             L  L  L +L  ++   L+ +    +A+  RL+EL +  N   +              
Sbjct: 480 PALAALRCLEVLQASDN-ALENVDG--VANLPRLQELLLCNNRLQQSA------------ 524

Query: 377 ASLDELMPLPRLTTLEI 393
            ++  L+  PRL  L +
Sbjct: 525 -AIQPLVSCPRLVLLNL 540

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 20/140 (14%)

Query: 254 GMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDI 313
            +     +      +     +   L  + TL    + +  I  +  L NL  L L ++ I
Sbjct: 17  ALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75

Query: 314 VEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSK 373
            +    L  LTK+  L+L+    LK ++   IA    ++ L +++  +            
Sbjct: 76  TDL-APLKNLTKITELELSGN-PLKNVSA--IAGLQSIKTLDLTSTQIT----------- 120

Query: 374 KSKASLDELMPLPRLTTLEI 393
                +  L  L  L  L +
Sbjct: 121 ----DVTPLAGLSNLQVLYL 136

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 5/108 (4%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIES 311
             G+  L+V+ L   Q+ ++ S +  L NLQ L +  + + D+T +  L  L  L   ++
Sbjct: 125 LAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 312 DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359
            I +    L  L  L  + L N   +  ++P  +A+ + L  + ++N 
Sbjct: 184 KISDIS-PLASLPNLIEVHLKNN-QISDVSP--LANTSNLFIVTLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 8/112 (7%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIES 311
              + +L  +   + ++  + S +  L NL  + L  + + D++ +    NL I++L   
Sbjct: 169 LANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ 227

Query: 312 DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEW 363
            I   P        L + ++        IAP  I      +    ++  + W
Sbjct: 228 TITNQPVF--YNNNLVVPNVVKGPSGAPIAPATI-----SDNGTYASPNLTW 272

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.6 bits (132), Expect = 6e-08
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 8/133 (6%)

Query: 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDY 288
            Q+ ++ L +        I    F GM++L  + + +  + ++P    L  +L  L LD 
Sbjct: 145 NQMIVVELGTNPLK-SSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDG 201

Query: 289 STLGDIT--IIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVI 345
           + +  +    +  L NL  L L  + I       L     LR L L N   L  + P  +
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKV-PGGL 259

Query: 346 ASFTRLEELYMSN 358
           A    ++ +Y+ N
Sbjct: 260 ADHKYIQVVYLHN 272

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.2 bits (131), Expect = 8e-08
 Identities = 22/117 (18%), Positives = 48/117 (41%), Gaps = 4/117 (3%)

Query: 246 NIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLDYSTLGDITIIGKLKNLE 304
            I    F  ++ L  + L N ++  +       LV L+ L L  + L ++      K L+
Sbjct: 66  EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP-EKMPKTLQ 124

Query: 305 ILSLIESDIVEFPEE-LGKLTKLRLLDL-TNCFHLKVIAPNVIASFTRLEELYMSNC 359
            L + E++I +  +     L ++ +++L TN      I         +L  + +++ 
Sbjct: 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 16/136 (11%)

Query: 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDY 288
             L  L+L +   S    I    F  + +L+ + L+  QL  LP    +   LQ L +  
Sbjct: 76  KNLHTLILINNKIS---KISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHE 130

Query: 289 STLGDIT--IIGKLKNLEILSL----IESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAP 342
           + +  +   +   L  + ++ L    ++S  +E       + KL  + + +  ++  I  
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE-NGAFQGMKKLSYIRIADT-NITTIPQ 188

Query: 343 NVIASFTRLEELYMSN 358
            +      L EL++  
Sbjct: 189 GL---PPSLTELHLDG 201

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 23/131 (17%), Positives = 37/131 (28%), Gaps = 19/131 (14%)

Query: 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDY 288
             L  L LS    S    +          L+ + L N +L  +P  +     +Q + L  
Sbjct: 216 NNLAKLGLSFNSIS---AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN 272

Query: 289 STLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLT-NCFHLKVIAPNVIAS 347
                        N   +S I S+    P    K      + L  N      I P+    
Sbjct: 273 -------------NN--ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317

Query: 348 FTRLEELYMSN 358
                 + + N
Sbjct: 318 VYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 55/328 (16%), Positives = 105/328 (32%), Gaps = 70/328 (21%)

Query: 257 ELKVVDLTNMQLFSLPSSI-------DL---------------LVNLQTLCLDYSTLGDI 294
            L+VV  +++ L  +P  +       DL               L NL TL L  + +  I
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91

Query: 295 T--IIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLE 352
           +      L  LE L L ++ + E PE++     L+ L +     +  +  +V     ++ 
Sbjct: 92  SPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHEN-EITKVRKSVFNGLNQMI 148

Query: 353 ELYMS-NCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELE 411
            + +  N      +E+                 + +L+ + IA  N   +P+G     L 
Sbjct: 149 VVELGTNPLKSSGIEN------------GAFQGMKKLSYIRIADTNITTIPQGLPPS-LT 195

Query: 412 RFKILIGDRSFEPPVILSKDWFRISRSHFLILDH-QSLRMLKLKLN-WKTICLRKLQGIR 469
                           L  D  +I++     L    +L  L L  N    +    L    
Sbjct: 196 E---------------LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240

Query: 470 KVEYLCLD--KFQGVKNILFELDTQGFSQLKHLLVQNNP-DLLFIVDSREIVDCDAFPLL 526
            +  L L+  K   V   L +        ++ + + NN    +   D             
Sbjct: 241 HLRELHLNNNKLVKVPGGLADH-----KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295

Query: 527 ELLSLQNLINLKRICVDRLSTESFSELR 554
             +SL +  N   +    +   +F  + 
Sbjct: 296 SGVSLFS--N--PVQYWEIQPSTFRCVY 319

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 7e-08
 Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 9/107 (8%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIES 311
                 LK++D+ N  L  LP   DL  +L+ +    + L ++  +  L  L  +    +
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLP---DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205

Query: 312 DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
            + + P+    L  +         +  +     + +   L  +Y  N
Sbjct: 206 SLKKLPDLPLSLESI------VAGNNILEELPELQNLPFLTTIYADN 246

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 15/138 (10%)

Query: 221 ELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVN 280
           +LP+    P LE +   +        +P+     +  L  +   N  L  LP   DL ++
Sbjct: 167 KLPDLP--PSLEFIAAGNNQLE---ELPE--LQNLPFLTAIYADNNSLKKLP---DLPLS 216

Query: 281 LQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVI 340
           L+++    + L ++  +  L  L  +    + +   P+    L  L + D     +L  +
Sbjct: 217 LESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN----YLTDL 272

Query: 341 APNVIASFTRLEELYMSN 358
            P +  S T L+      
Sbjct: 273 -PELPQSLTFLDVSENIF 289

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 26/154 (16%), Positives = 54/154 (35%), Gaps = 30/154 (19%)

Query: 221 ELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVN 280
           ELPE    P L  +   +       N+ +        L+ +++ +  L  LP     L  
Sbjct: 229 ELPELQNLPFLTTIYADN-------NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTF 281

Query: 281 LQTLCLDYSTLGDI---------------TIIGKLKNLEILSLIESDIVEFPEELGKLTK 325
           L      +S L ++               ++     +LE L++  + ++E P    +L +
Sbjct: 282 LDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLER 341

Query: 326 LRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359
              L  +   HL  +          L++L++   
Sbjct: 342 ---LIASFN-HLAEV----PELPQNLKQLHVEYN 367

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 10/101 (9%)

Query: 258 LKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFP 317
           LK + +    L   P   + + +L+             +    +NL+ L +  + + EFP
Sbjct: 359 LKQLHVEYNPLREFPDIPESVEDLRMNSHL------AEVPELPQNLKQLHVETNPLREFP 412

Query: 318 EELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
           +    +  LR+        +         +  +LE+    +
Sbjct: 413 DIPESVEDLRMNSE----RVVDPYEFAHETTDKLEDDVFEH 449

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 30/140 (21%), Positives = 46/140 (32%), Gaps = 21/140 (15%)

Query: 254 GMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDI 313
           G+      +L    +  L  S   L  +Q    D S +  +  +    NL+ L L  + I
Sbjct: 17  GLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI 75

Query: 314 VEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSK 373
            +    L  LTKL  L +     LK +          L  L++ N  +            
Sbjct: 76  SDL-SPLKDLTKLEELSVNRN-RLKNLNGI---PSACLSRLFLDNNELR----------- 119

Query: 374 KSKASLDELMPLPRLTTLEI 393
                 D L+ L  L  L I
Sbjct: 120 ----DTDSLIHLKNLEILSI 135

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 26/163 (15%), Positives = 57/163 (34%), Gaps = 39/163 (23%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIES 311
              +  ++  +  N  + SL + +    NL+ L L ++ + D++ +  L  LE LS+  +
Sbjct: 37  QKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95

Query: 312 DIVEFP--------------------EELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRL 351
            +                        + L  L  L +L + N   LK I    +   ++L
Sbjct: 96  RLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNN-KLKSIVM--LGFLSKL 152

Query: 352 EELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIA 394
           E L +    +                +   L  L ++  +++ 
Sbjct: 153 EVLDLHGNEIT---------------NTGGLTRLKKVNWIDLT 180

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 10/123 (8%)

Query: 224 EGLECPQLELLLLSS-EHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQ 282
            G+    L  L L + E    D          ++ L+++ + N +L S+   +  L  L+
Sbjct: 101 NGIPSACLSRLFLDNNELRDTD------SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLE 153

Query: 283 TLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAP 342
            L L  + + +   + +LK +  + L     V   E +    +L + +       + I+P
Sbjct: 154 VLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVN--EPVKYQPELYITNTVKDPDGRWISP 211

Query: 343 NVI 345
             I
Sbjct: 212 YYI 214

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS--LPSSIDLLVNLQTLC 285
             ++  L LS  +      IP      +  L  + +  +      +P +I  L  L  L 
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 286 LDYSTL-GDI-TIIGKLKNLEILSLIESDIV-EFPEELGKLTKLRLLDLTN 333
           + ++ + G I   + ++K L  L    + +    P  +  L  L  +    
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 258 LKVVDLTNMQLF-SLPSSIDLLVNLQTLCLDYSTL-GDITIIGKLKNLEILSLIESDIV- 314
           L  VDL+   L            N Q + L  ++L  D+  +G  KNL  L L  + I  
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258

Query: 315 EFPEELGKLTKLRLLDL 331
             P+ L +L  L  L++
Sbjct: 259 TLPQGLTQLKFLHSLNV 275

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 11/96 (11%)

Query: 271 LPSSIDLLVNLQTLCLDYSTL-GDITI---IGKLKNLEILSLIESDIVEF----PEELGK 322
           L  +      +  L L    L     I   +  L  L  L +    I       P  + K
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI--GGINNLVGPIPPAIAK 99

Query: 323 LTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
           LT+L  L +T+      I P+ ++    L  L  S 
Sbjct: 100 LTQLHYLYITHTNVSGAI-PDFLSQIKTLVTLDFSY 134

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 23/139 (16%)

Query: 221 ELPEGLECPQLELLLLSS-EHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLV 279
            LP+ L    +  L++     +S+    P+        L+ ++++  QL SLP     L+
Sbjct: 54  TLPDCL-PAHITTLVIPDNNLTSLPALPPE--------LRTLEVSGNQLTSLPVLPPGLL 104

Query: 280 NLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKV 339
            L       + L  +        L  L +  + +   P     L +L + D      L  
Sbjct: 105 ELSIFSNPLTHLPAL-----PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN----QLAS 155

Query: 340 IAPNVIASFTRLEELYMSN 358
           +        + L +L+  N
Sbjct: 156 LPA----LPSELCKLWAYN 170

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 25/138 (18%)

Query: 221 ELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVN 280
            LP GL     +L +  ++ +S+ V  P         L+ + +++ QL SLP+    L  
Sbjct: 118 ALPSGLC----KLWIFGNQLTSLPVLPPG--------LQELSVSDNQLASLPALPSELCK 165

Query: 281 LQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVI 340
           L       ++L           L+ LS+ ++ +   P    +L KL   +      L  +
Sbjct: 166 LWAYNNQLTSLPM-----LPSGLQELSVSDNQLASLPTLPSELYKLWAYNN----RLTSL 216

Query: 341 APNVIASFTRLEELYMSN 358
                A  + L+EL +S 
Sbjct: 217 P----ALPSGLKELIVSG 230

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.1 bits (117), Expect = 6e-06
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 12/101 (11%)

Query: 258 LKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFP 317
             V+++    L +LP  +    ++ TL +  + L  +        L  L +  + +   P
Sbjct: 42  NAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTSLP 97

Query: 318 EELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
                L +L +       HL  +          L +L++  
Sbjct: 98  VLPPGLLELSIFSNPLT-HLPALPSG-------LCKLWIFG 130

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 19/169 (11%)

Query: 221 ELPEGLECPQLE-LLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLV 279
            LP      +L  L   ++  +S+              LK + ++  +L SLP       
Sbjct: 195 SLPTLP--SELYKLWAYNNRLTSLPALPSG--------LKELIVSGNRLTSLPVLPS--- 241

Query: 280 NLQTLCLDYSTLGDI-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLK 338
            L+ L +  + L  +  +      L  LS+  + +   PE L  L+    ++L     L 
Sbjct: 242 ELKELMVSGNRLTSLPMLPS---GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN-PLS 297

Query: 339 VIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPR 387
                 +   T            +         ++    +  + +   R
Sbjct: 298 ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.4 bits (128), Expect = 3e-07
 Identities = 68/403 (16%), Positives = 122/403 (30%), Gaps = 69/403 (17%)

Query: 206 LKKCYAISWIDSSGGELPEGLECPQLELLLLS-SEHSSVDVNIPQRFFTGMRELKVVDLT 264
           +++            EL +      LE+L    +E + +     +      R L  V + 
Sbjct: 171 MEESSFSEKDGKWLHELAQH--NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228

Query: 265 NMQLFSLPSSIDLLVNLQTLCL-----DYSTLGDITIIGKLKNLEILSLIESDIVEFPEE 319
           + ++  L        NL+  C      D         +   + L  L L      E P  
Sbjct: 229 DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL 288

Query: 320 LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASL 379
                ++R LDL            +I     LE L   N      + D G         L
Sbjct: 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-----IGDRG---------L 334

Query: 380 DELMPL-PRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRS 438
           + L     +L  L I          G   + +E  + L+  R     + L++    +   
Sbjct: 335 EVLAQYCKQLKRLRIE--------RGADEQGMEDEEGLVSQRGL---IALAQGCQEL--- 380

Query: 439 HFLILDH-----QSLRMLKLKL-NWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQ 492
            ++ +       +SL  +   L N     L  L    ++  L LD   GV+++L      
Sbjct: 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD--NGVRSLL-----I 433

Query: 493 GFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQN-------LINLKRICVDRL 545
           G  +L+            + D          P +  + L         L+   R C    
Sbjct: 434 GCKKLRRFAFYLRQGG--LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC---- 487

Query: 546 STESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCN 588
                  L+ +++  C   S   + +    LPSL+ + V    
Sbjct: 488 -----PNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 69/385 (17%), Positives = 109/385 (28%), Gaps = 90/385 (23%)

Query: 259 KVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPE 318
             V        +   S + L  L +L    S++ D+T I KL  L  L    ++I     
Sbjct: 22  SEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD- 80

Query: 319 ELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKAS 378
            L + T L  L   +   L  +    +   T+L  L      +                 
Sbjct: 81  -LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTYLNCDTNKLT---------------K 120

Query: 379 LDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRS 438
           LD +   P LT L       N L E   V    +   L              D     + 
Sbjct: 121 LD-VSQNPLLTYLNC---ARNTLTE-IDVSHNTQLTEL--------------DCHLNKKI 161

Query: 439 HFLILDH-QSLRMLKLKLNW-KTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQ 496
             L +     L  L    N    + + + +    +  L  D      N + +LD     Q
Sbjct: 162 TKLDVTPQTQLTTLDCSFNKITELDVSQNK---LLNRLNCD-----TNNITKLDLNQNIQ 213

Query: 497 LKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDR-----LSTESFS 551
           L  L   +N                    L  + +  L  L            L   + S
Sbjct: 214 LTFLDCSSNK-------------------LTEIDVTPLTQLTYFDCSVNPLTELDVSTLS 254

Query: 552 ELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIE 611
           +L T+      +L  I +         L       C K+KE+          V +N  + 
Sbjct: 255 KLTTLHCIQT-DLLEIDLTH----NTQLIYFQAEGCRKIKELD---------VTHNTQLY 300

Query: 612 --NIEFAQIRYLSLGNLPELKSFCC 634
             + + A I  L L   P+L     
Sbjct: 301 LLDCQAAGITELDLSQNPKLVYLYL 325

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 13/107 (12%), Positives = 30/107 (28%), Gaps = 8/107 (7%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIES 311
            +    L  ++     L  +   +     L  L    +       +     L  L    +
Sbjct: 123 VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180

Query: 312 DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
            I E    + +   L  L+     ++  +    +    +L  L  S+
Sbjct: 181 KITELD--VSQNKLLNRLNCDTN-NITKLD---LNQNIQLTFLDCSS 221

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 16/133 (12%)

Query: 228 CPQLELLLLSS-EHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCL 286
              L  L   +   + +D            +L  +D ++ +L  +   +  L  L     
Sbjct: 190 NKLLNRLNCDTNNITKLD-------LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDC 240

Query: 287 DYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIA 346
             + L ++ +   L  L  L  I++D++E    L   T+L       C  +K +    + 
Sbjct: 241 SVNPLTELDV-STLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKELD---VT 294

Query: 347 SFTRLEELYMSNC 359
             T+L  L     
Sbjct: 295 HNTQLYLLDCQAA 307

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 25/165 (15%), Positives = 46/165 (27%), Gaps = 31/165 (18%)

Query: 228 CPQLELLLLSS-EHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCL 286
             QL     S    + +DV+          +L  +      L  +  +      L     
Sbjct: 232 LTQLTYFDCSVNPLTELDVSTLS-------KLTTLHCIQTDLLEIDLTH--NTQLIYFQA 282

Query: 287 DYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIA 346
           +         +     L +L    + I E    L +  KL  L L N   L  +    ++
Sbjct: 283 EGCRKIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNT-ELTELD---VS 336

Query: 347 SFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTL 391
             T+L+ L   N  ++                   +  +P L   
Sbjct: 337 HNTKLKSLSCVNAHIQ---------------DFSSVGKIPALNNN 366

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIES 311
            +   +L  + L N +L  L   +     L++L    + + D + +GK+  L      E 
Sbjct: 314 LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEG 371

Query: 312 DIVEFPEELGKLTKLRLLDLTN 333
             +  P+E      L +    +
Sbjct: 372 QTITMPKETLTNNSLTIAVSPD 393

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 5/117 (4%)

Query: 246 NIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLDYSTLGDIT--IIGKLKN 302
            +    F G+ +L  ++L   QL +L + + D L  L TL L  + L  +   +   L  
Sbjct: 49  TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ 108

Query: 303 LEILSLIESDIVEFPEEL-GKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
           L+ L L  + +   P  +  +LTKL+ L L N   L+ I        T L+ L +S 
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIPAGAFDKLTNLQTLSLST 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 5/116 (4%)

Query: 247 IPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLDYSTLGDI--TIIGKLKNL 303
           IP   F+  ++L+ +DL+N Q+  L       L +L +L L  + + ++  ++   L +L
Sbjct: 47  IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106

Query: 304 EILSLIESDIVEFPEEL-GKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
           ++L L  + I     +    L  L LL L +   L+ IA    +    ++ ++++ 
Sbjct: 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQ 161

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 12/123 (9%)

Query: 246 NIPQRFFTGMRELKVVDLT-NMQLFSLPSSI-DLLVNLQTLCLDYSTLGDITII-----G 298
            IP   F+ +  +  + ++ ++ L  L S     L  +  + +  +   ++T I      
Sbjct: 45  TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR--NLTYIDPDALK 102

Query: 299 KLKNLEILSLIESDIVEFPEE--LGKLTKLRLLDLTNCFHLKVIAPNVIASFTR-LEELY 355
           +L  L+ L +  + +  FP+   +       +L++T+  ++  I  N           L 
Sbjct: 103 ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162

Query: 356 MSN 358
           + N
Sbjct: 163 LYN 165

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 7/107 (6%)

Query: 257 ELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI--TIIGKLKNLEILSLIESDIV 314
           + +   +T   +  +PS   L  + QTL L  + L  I       L N+  + +     +
Sbjct: 12  QEEDFRVTCKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68

Query: 315 EF--PEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359
           +         L+K+  +++ N  +L  I P+ +     L+ L + N 
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 19/137 (13%), Positives = 41/137 (29%), Gaps = 9/137 (6%)

Query: 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP--SSIDLLVNLQTLCL 286
            ++  + +   ++     I       +  LK + + N  L   P  + +        L +
Sbjct: 80  SKVTHIEIR--NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137

Query: 287 DY----STLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAP 342
                 +++      G       L L  +            TKL  + L    +L VI  
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

Query: 343 NVIAS-FTRLEELYMSN 358
           +     ++    L +S 
Sbjct: 198 DAFGGVYSGPSLLDVSQ 214

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 17/137 (12%)

Query: 257 ELKVVDLTNM--QLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIV 314
           E + V+L  M   +  + +++  L   + L L  + +  I+ +  ++NL ILSL  + I 
Sbjct: 24  EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK 83

Query: 315 EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKK 374
           +          L  L ++    +  ++   I     L  LYMSN  +             
Sbjct: 84  KIENLDAVADTLEELWISYN-QIASLSG--IEKLVNLRVLYMSNNKIT------------ 128

Query: 375 SKASLDELMPLPRLTTL 391
           +   +D+L  L +L  L
Sbjct: 129 NWGEIDKLAALDKLEDL 145

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 19/115 (16%), Positives = 47/115 (40%), Gaps = 5/115 (4%)

Query: 248 PQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLDYSTLGDIT--IIGKLKNLE 304
               F  + +L+ ++ +N ++  +     +    +  + L  + L ++   +   L++L+
Sbjct: 49  ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLK 108

Query: 305 ILSLIESDIVEFPEEL-GKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
            L L  + I     +    L+ +RLL L +   +  +AP    +   L  L +  
Sbjct: 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLA 162

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 5/115 (4%)

Query: 247 IPQRFFTGMRELKVVDLTNMQLFSLPSSIDLL--VNLQTLCLDYSTLGDITIIGKLKNLE 304
           +P+  F+G+R +  +++    L +          + L  L +  + L  I      + L 
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP-KDLPETLN 196

Query: 305 ILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
            L L  + I     E L + +KL  L L +   +++I    ++    L EL++ N
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDN 250

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 25/134 (18%), Positives = 58/134 (43%), Gaps = 13/134 (9%)

Query: 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDY 288
             L  L+L +   S    I ++ F+ +R+L+ + ++   L  +P   +L  +L  L +  
Sbjct: 78  QHLYALVLVNNKIS---KIHEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLVELRIHD 132

Query: 289 STLGDIT--IIGKLKNLEILSLIESDIVEFPEELGKLTKLRL--LDLTNCFHLKVIAPNV 344
           + +  +   +   L+N+  + +  + +     E G    L+L  L ++    L  I  ++
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKDL 191

Query: 345 IASFTRLEELYMSN 358
                 L EL++ +
Sbjct: 192 ---PETLNELHLDH 202

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 5/117 (4%)

Query: 246 NIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYSTLGDITIIGKLKNLE 304
            + +  F G++ L  + L N ++  +   +   L  LQ L +  + L +I       +L 
Sbjct: 68  ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP-PNLPSSLV 126

Query: 305 ILSLIESDIVEFPEE-LGKLTKLRLLDL-TNCFHLKVIAPNVIASFTRLEELYMSNC 359
            L + ++ I + P+     L  +  +++  N        P       +L  L +S  
Sbjct: 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-LKLNYLRISEA 182

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 20/132 (15%), Positives = 37/132 (28%), Gaps = 19/132 (14%)

Query: 228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLD 287
             +L  L L          I     + +  L+ + L N +L  +P+ +  L  LQ + L 
Sbjct: 216 YSKLYRLGLGHNQIR---MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH 272

Query: 288 YSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLT-NCFHLKVIAPNVIA 346
                         N   ++ +  +         K      + L  N      + P    
Sbjct: 273 T-------------NN--ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317

Query: 347 SFTRLEELYMSN 358
             T    +   N
Sbjct: 318 CVTDRLAIQFGN 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 27/126 (21%)

Query: 257 ELKVVDLTNMQLFSLPSSI-------DL---------------LVNLQTLCLDYSTLGDI 294
            L+VV  +++ L ++P  I       DL               L +L  L L  + +  I
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93

Query: 295 T--IIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLE 352
                  L+ L+ L + ++ +VE P  L   + L  L + +   ++ +   V +    + 
Sbjct: 94  HEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDN-RIRKVPKGVFSGLRNMN 150

Query: 353 ELYMSN 358
            + M  
Sbjct: 151 CIEMGG 156

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.8 bits (116), Expect = 7e-06
 Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 23/139 (16%)

Query: 221 ELPEGLECPQLELLLLSSEH-SSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLV 279
            LP+ L  PQ+ +L ++     S+              L+ +D  + +L +LP   +L  
Sbjct: 73  SLPDNL-PPQITVLEITQNALISLPELPAS--------LEYLDACDNRLSTLP---ELPA 120

Query: 280 NLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKV 339
           +L+ L +D + L    +      LE ++   + +   PE    L  L + +      L  
Sbjct: 121 SLKHLDVDNNQL--TMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNN----QLTF 174

Query: 340 IAPNVIASFTRLEELYMSN 358
           + P +  S   LE L +S 
Sbjct: 175 L-PELPES---LEALDVST 189

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.3 bits (107), Expect = 9e-05
 Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 28/143 (19%)

Query: 221 ELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVN 280
            LPE      LE+L + +       N           L+ +D++   L SLP+      +
Sbjct: 154 MLPE--LPTSLEVLSVRN-------NQLTFLPELPESLEALDVSTNLLESLPAVPVRNHH 204

Query: 281 LQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVI 340
            +                           E+ I   PE +  L     + L +   L   
Sbjct: 205 SEET------------------EIFFRCRENRITHIPENILSLDPTCTIILEDN-PLSSR 245

Query: 341 APNVIASFTRLEELYMSNCFVEW 363
               ++  T   + +    +   
Sbjct: 246 IRESLSQQTAQPDYHGPRIYFSM 268

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 24/152 (15%)

Query: 226 LECPQLELLLLSSEHSSVDV-NIPQRFFTGMRELKVVDLTNMQLFSLPSSID--LLVNLQ 282
           +  P      LS       +      +F+   + +   L         S +   L+    
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFS 62

Query: 283 TLCLDYSTLGDI-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLD---------LT 332
            L L+   L  +   +     + +L + ++ ++  PE    L  L   D           
Sbjct: 63  ELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPA 120

Query: 333 NCFHLKVIA------PNVIASFTRLEELYMSN 358
           +  HL V        P + A    LE +   N
Sbjct: 121 SLKHLDVDNNQLTMLPELPAL---LEYINADN 149

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.7 bits (116), Expect = 8e-06
 Identities = 72/504 (14%), Positives = 150/504 (29%), Gaps = 94/504 (18%)

Query: 240 HSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSS-IDLLVNLQTLCLDYSTLGDI--TI 296
            + V  ++P          K + L+   +  L    I  L  L+ L L ++ +  +   +
Sbjct: 43  LTHVPKDLP-------PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV 95

Query: 297 IGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDL-TNCFHLKVIAPN-VIASFTRLEEL 354
               ++LE L +  + +         +  LR LDL  N     V+       + T+L  L
Sbjct: 96  FLFNQDLEYLDVSHNRLQNIS--CCPMASLRHLDLSFN--DFDVLPVCKEFGNLTKLTFL 151

Query: 355 YMSN---------CFVEWKVEDEGSSSKKSKASLDELMPLPRLTT--LEIAVENDNALPE 403
            +S                +               E   L    T  L +    ++    
Sbjct: 152 GLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSV 211

Query: 404 GFFV-----RELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWK 458
              +       L+   I + D + +  +    +  R      + L H       ++  WK
Sbjct: 212 QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH-------IETTWK 264

Query: 459 TIC-LRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREI 517
               L +    R VEYL +      + I  E  T   + LK L++++  + +F+     +
Sbjct: 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL 324

Query: 518 VDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDE--LSNIFVLSTTKC 575
                     + +  N+  L       +         +    N  +   ++  V      
Sbjct: 325 YS--------VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS-VFQGCST 375

Query: 576 LPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCE 635
           L  LQ + + + N +K  F +                            N+  L++    
Sbjct: 376 LKRLQTLIL-QRNGLKNFFKVAL-----------------------MTKNMSSLETLDVS 411

Query: 636 VKGPSMPPSLFNGKVVLP-NLEALELCEINVKSIWHNQ-----TPCCFQRLTRLIVWGCQ 689
           +   S+    ++       ++  L L          N        C   ++  L +   +
Sbjct: 412 LN--SLNSHAYDRTCAWAESILVLNLS--------SNMLTGSVFRCLPPKVKVLDLHNNR 461

Query: 690 KLKFMFYASMIKSLEQLQHLEIRN 713
               M     +  L+ LQ L + +
Sbjct: 462 ---IMSIPKDVTHLQALQELNVAS 482

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 21/110 (19%), Positives = 46/110 (41%), Gaps = 5/110 (4%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSI--DLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLI 309
              M  L+ +D++   L S           ++  L L  + L           +++L L 
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH 458

Query: 310 ESDIVEFPEELGKLTKLRLLDL-TNCFHLKVIAPNVIASFTRLEELYMSN 358
            + I+  P+++  L  L+ L++ +N   LK +   V    T L+ +++ +
Sbjct: 459 NNRIMSIPKDVTHLQALQELNVASN--QLKSVPDGVFDRLTSLQYIWLHD 506

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 4/116 (3%)

Query: 246 NIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLDYSTLGDI--TIIGKLKN 302
            +    F  +  LK + L + QL +LP  + D L  L  L L  + L  +   +  +L +
Sbjct: 54  KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113

Query: 303 LEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358
           L+ L +  + + E P  + +LT L  L L     LK I        + L   Y+  
Sbjct: 114 LKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFG 168

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 20/172 (11%)

Query: 12  LNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNA 71
           L  E+   +  + +        + + A  I+KEC G P+ +  I   LR+      W   
Sbjct: 286 LGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNR--WAYY 341

Query: 72  LHELRMPTENNFHRELGKAY----TAIKLSYDALKGEQLKKIFQLCSLMPKSFFASDLFK 127
           L +L+        +     Y     A+ +S + L+ E +K  +   S++ K         
Sbjct: 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKV- 399

Query: 128 YCIGLGIFRGIDMEDARNKLYTLVHELKDSCLLLEGYSCRE--FSMHDVVHD 177
               L +   ++ E+  + L   V+      LL    + +   + +HD+  D
Sbjct: 400 ----LCVLWDLETEEVEDILQEFVN----KSLLFCNRNGKSFCYYLHDLQVD 443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 21/99 (21%)

Query: 261 VDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEEL 320
           +  T          +    NL  L ++              N + L  +E        +L
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIE--------------NQQHLQHLE------LRDL 52

Query: 321 GKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359
             L +LR L +     L+ +AP+      RL  L +S  
Sbjct: 53  RGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 7/84 (8%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLDYSTLGDIT--IIGKLKNLEILSL 308
            +  + L ++DL+N ++ +L +     +  L TL L Y+ L  I       LK+L +LSL
Sbjct: 50  LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109

Query: 309 IESDIVEFPE----ELGKLTKLRL 328
             +DI   PE    +L  L+ L +
Sbjct: 110 HGNDISVVPEGAFNDLSALSHLAI 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 250 RFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLI 309
           R    +REL V+D        +       VNL+ L L    L  ++ + KL  L+ L L 
Sbjct: 21  RTPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELS 79

Query: 310 ESDIVEFPEELG-KLTKLRLLDLTNCF--HLKVIAPNVIASFTRLEELYMSNC 359
           E+ I    + L  KL  L  L+L+      +  + P  +     L+ L + NC
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP--LKKLECLKSLDLFNC 130

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 9/138 (6%)

Query: 222 LPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNL 281
            P+      ++  L     +             +  +  +   N  + S+   I  L N+
Sbjct: 13  FPDDAFAETIKANLKKKSVTDAVT------QNELNSIDQIIANNSDIKSVQG-IQYLPNV 65

Query: 282 QTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEEL-GKLTKLRLLDLTNCFHLKVI 340
           + L L  + L DI+ + +L NL  L L  + +   P  +  KLT L+ L L     L+ +
Sbjct: 66  RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSL 124

Query: 341 APNVIASFTRLEELYMSN 358
              V    T L  L +++
Sbjct: 125 PDGVFDKLTNLTYLNLAH 142

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 247 IPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLCLDYSTLGDI--TIIGKLKNL 303
           +P   F  +  LK + L   QL SLP  + D L NL  L L ++ L  +   +  KL NL
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159

Query: 304 EILSLIESDIVEFPEEL-GKLTKLRLLDLTN 333
             L L  + +   PE +  KLT+L+ L L  
Sbjct: 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 249 QRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSL 308
            R  + ++EL V+D +      L    D    L+ L      L  I  + KL  L+ L L
Sbjct: 13  NRTPSDVKEL-VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLEL 71

Query: 309 IESDIVEFPEELG-KLTKLRLLDLTNCF--HLKVIAPNVIASFTRLEELYMSNC 359
            ++ +    E L  K   L  L+L+      L  I P  +     L+ L + NC
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP--LKKLENLKSLDLFNC 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 5/111 (4%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIES 311
           +T     + +DL   ++  + +    L     +    + +  +     L+ L+ L +  +
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 74

Query: 312 DIVEFPEELG-KLTKLRLLDLTNCF--HLKVIAPNVIASFTRLEELYMSNC 359
            I    E L   L  L  L LTN     L  + P  +AS   L  L +   
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDP--LASLKSLTYLCILRN 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	922
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.98
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.98
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.86
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.85
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.82
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.8
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.8
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.8
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.8
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.8
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.79
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.79
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.79
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.79
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.78
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.78
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.77
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.76
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.75
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.75
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.75
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.74
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.72
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.71
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.71
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.71
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.7
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.7
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.69
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.69
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.68
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.68
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.67
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.66
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.64
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.64
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.62
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.62
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.61
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.61
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.61
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.6
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.59
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.59
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.59
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.58
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.57
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.56
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.56
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.55
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.54
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.54
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.54
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.54
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.53
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.53
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.53
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.52
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.49
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.48
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.45
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.44
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.42
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.41
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.39
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.38
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.38
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.38
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.35
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.33
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.33
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.31
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.29
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.27
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.27
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.25
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.21
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.2
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.18
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.1
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.03
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.96
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.83
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.81
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.79
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.74
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.67
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.58
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.21
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.21
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.16
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.14
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.09
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.03
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.0
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.78
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.73
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.73
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.6
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.58
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.46
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.32
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.92
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.18
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	93.28
2fna_A	357	Conserved hypothetical protein; structural genomic	92.16
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.92
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	82.95

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.6e-41  Score=406.46  Aligned_cols=603  Identities=16%  Similarity=0.039  Sum_probs=393.1

Q ss_pred             cCcceEEEeecCCCCC----CCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc-cCch--hhhc
Q 002432          206 LKKCYAISWIDSSGGE----LPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-SLPS--SIDL  277 (922)
Q Consensus       206 ~~~l~~L~l~~~~~~~----l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~--~i~~  277 (922)
                      ..+++.|+++++.+..    +++.+ .++.|+.++++.+...   .+|.. |+++++||+|+|++|.+. .+|.  .+++
T Consensus        49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~---~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~  124 (768)
T 3rgz_A           49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN---GSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGS  124 (768)
T ss_dssp             TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE---ECCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGG
T ss_pred             CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC---CCchh-hccCCCCCEEECCCCcCCCcCCChHHHhC
Confidence            3578889998887743    45433 7888888888887543   34454 488999999999999887 4677  8899


Q ss_pred             cCCCCEEEccCCCCCC--cccc-CCCCcCCEEEeecCCCccc-chh---hcCCCCCCEEeccCCCCCCccCcchhCCCCC
Q 002432          278 LVNLQTLCLDYSTLGD--ITII-GKLKNLEILSLIESDIVEF-PEE---LGKLTKLRLLDLTNCFHLKVIAPNVIASFTR  350 (922)
Q Consensus       278 L~~L~~L~L~~~~l~~--p~~i-~~L~~L~~L~L~~~~l~~l-p~~---i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~  350 (922)
                      +++|++|++++|.+..  |..+ .++++|++|++++|+++.. |..   +.++++|++|++++|. +....+  ++++++
T Consensus       125 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~  201 (768)
T 3rgz_A          125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD--VSRCVN  201 (768)
T ss_dssp             CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB--CTTCTT
T ss_pred             CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccCC--cccCCc
Confidence            9999999999998765  4443 7899999999999988854 444   7889999999999886 544433  478899


Q ss_pred             CCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC-CCCccc-cccccceeEEEEccCCCCCCccc
Q 002432          351 LEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN-ALPEGF-FVRELERFKILIGDRSFEPPVIL  428 (922)
Q Consensus       351 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~l~~~~~~~~~~~~~~l  428 (922)
                      |++|++++|.+..              .+..++++++|++|++++|... .+|..+ .+++|+.|.+.....  ....  
T Consensus       202 L~~L~Ls~n~l~~--------------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l--~~~~--  263 (768)
T 3rgz_A          202 LEFLDVSSNNFST--------------GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF--VGPI--  263 (768)
T ss_dssp             CCEEECCSSCCCS--------------CCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCC--EESC--
T ss_pred             CCEEECcCCcCCC--------------CCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcc--cCcc--
Confidence            9999999888763              2333888889999999988765 334433 566666665432211  0000  


Q ss_pred             cccccccccccccccccccceeeEecccccchh-hhcc---cCCcceeEEeeccccCccccccccccccccCCcEEEEec
Q 002432          429 SKDWFRISRSHFLILDHQSLRMLKLKLNWKTIC-LRKL---QGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQN  504 (922)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~  504 (922)
                       ..           .....++.+++..+.  +. .+|.   ..+++|+.|++.++......+..+  +.+++|++|++++
T Consensus       264 -~~-----------~~l~~L~~L~L~~n~--l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~  327 (768)
T 3rgz_A          264 -PP-----------LPLKSLQYLSLAENK--FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF--GSCSLLESLALSS  327 (768)
T ss_dssp             -CC-----------CCCTTCCEEECCSSE--EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG--GGCTTCCEEECCS
T ss_pred             -Cc-----------cccCCCCEEECcCCc--cCCccCHHHHhhcCcCCEEECcCCcCCCccchHH--hcCCCccEEECCC
Confidence             00           011256666665442  22 1111   113778888888765444444433  5678888888887


Q ss_pred             CCCceEeecCcccccCccccccccccccccccccccccccccccccc-CcCeeEEecCCCccccccccccccCCCccEEE
Q 002432          505 NPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFS-ELRTMKVENCDELSNIFVLSTTKCLPSLQRIA  583 (922)
Q Consensus       505 ~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~  583 (922)
                      +.....++.    .....+++|+.|+++++.-...++..   ...++ +|+.|++.+|.--..+++......+++|++|+
T Consensus       328 n~l~~~ip~----~~l~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~  400 (768)
T 3rgz_A          328 NNFSGELPM----DTLLKMRGLKVLDLSFNEFSGELPES---LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY  400 (768)
T ss_dssp             SEEEEECCH----HHHTTCTTCCEEECCSSEEEECCCTT---HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred             CcccCcCCH----HHHhcCCCCCEEeCcCCccCccccHH---HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence            743223221    01345677888888877533233322   34455 78888888773222222211112267788888


Q ss_pred             EcccccchhhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeeccc
Q 002432          584 VIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEI  663 (922)
Q Consensus       584 l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  663 (922)
                      +++|.....++..               ...+++|+.|+++++.--..             .+..+..+++|+.|++++|
T Consensus       401 L~~n~l~~~~p~~---------------l~~l~~L~~L~Ls~N~l~~~-------------~p~~l~~l~~L~~L~L~~n  452 (768)
T 3rgz_A          401 LQNNGFTGKIPPT---------------LSNCSELVSLHLSFNYLSGT-------------IPSSLGSLSKLRDLKLWLN  452 (768)
T ss_dssp             CCSSEEEEECCGG---------------GGGCTTCCEEECCSSEEESC-------------CCGGGGGCTTCCEEECCSS
T ss_pred             CCCCccccccCHH---------------HhcCCCCCEEECcCCcccCc-------------ccHHHhcCCCCCEEECCCC
Confidence            8887533333321               24578888888888743222             2234457889999999999


Q ss_pred             ceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeec
Q 002432          664 NVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISL  743 (922)
Q Consensus       664 ~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l  743 (922)
                      .++...+..+ ..+++|++|++++|.-...+|  ..+..+++|++|++++|.-...++        .....+++|++|++
T Consensus       453 ~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~p--------~~~~~l~~L~~L~L  521 (768)
T 3rgz_A          453 MLEGEIPQEL-MYVKTLETLILDFNDLTGEIP--SGLSNCTNLNWISLSNNRLTGEIP--------KWIGRLENLAILKL  521 (768)
T ss_dssp             CCCSCCCGGG-GGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCCSCCC--------GGGGGCTTCCEEEC
T ss_pred             cccCcCCHHH-cCCCCceEEEecCCcccCcCC--HHHhcCCCCCEEEccCCccCCcCC--------hHHhcCCCCCEEEC
Confidence            7775433322 357899999999964433443  347889999999999985333432        12335789999999


Q ss_pred             ccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccc-------cccC---------------------
Q 002432          744 CHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKK-------QLHV---------------------  795 (922)
Q Consensus       744 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~-------~~~~---------------------  795 (922)
                      ++|.....+|..+.  .+++|+.|++++|+-...+|............       ...+                     
T Consensus       522 ~~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  599 (768)
T 3rgz_A          522 SNNSFSGNIPAELG--DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI  599 (768)
T ss_dssp             CSSCCEEECCGGGG--GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred             CCCcccCcCCHHHc--CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence            99977767776665  89999999999986666777653222111000       0000                     


Q ss_pred             ----------------CCCC----cceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCc-ccchhH
Q 002432          796 ----------------PKQP----FFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSA-SVPIGL  854 (922)
Q Consensus       796 ----------------~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~-~lp~~~  854 (922)
                                      ....    ....+..+++|+.|++++|++....|..   .+.+++|+.|++++|.+. .+|..+
T Consensus       600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~---l~~l~~L~~L~Ls~N~l~g~ip~~l  676 (768)
T 3rgz_A          600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE---IGSMPYLFILNLGHNDISGSIPDEV  676 (768)
T ss_dssp             CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG---GGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH---HhccccCCEEeCcCCccCCCCChHH
Confidence                            0000    0112345678888888888887666655   347788888888887776 666654


Q ss_pred             HhhcCCCCeEEEecccceEEecCC-ccccccceEeccccccccccccC
Q 002432          855 LEKFHGLENLNLSFCSYKELFSNG-GQVHLIKKLELICLNDLEYLWIP  901 (922)
Q Consensus       855 l~~l~~L~~L~l~~c~l~~l~~~~-~~~~sL~~L~i~~c~~L~~l~~~  901 (922)
                       +++++|+.|++++|.+.+..|.. +.+++|++|++++|+--..+|..
T Consensus       677 -~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          677 -GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             -GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             -hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence             68888888888888887655543 55788888888877666677754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.3e-40  Score=394.12  Aligned_cols=174  Identities=21%  Similarity=0.250  Sum_probs=106.0

Q ss_pred             EEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCC
Q 002432          211 AISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYS  289 (922)
Q Consensus       211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~  289 (922)
                      .++.+++.+..+|.... +++++|++++|...   .++...|.++++|++|++++|.+..+ |..++++++|++|++++|
T Consensus         8 ~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A            8 VADCSHLKLTQVPDDLP-TNITVLNLTHNQLR---RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             EEECCSSCCSSCCSCSC-TTCSEEECCSSCCC---CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred             eeECCCCCccccccccC-CCCcEEECCCCCCC---CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence            45555555666665432 56677777766654   45555556677777777777766654 456666777777777777


Q ss_pred             CCCC-c-cccCCCCcCCEEEeecCCCcccc-hhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccccc
Q 002432          290 TLGD-I-TIIGKLKNLEILSLIESDIVEFP-EELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVE  366 (922)
Q Consensus       290 ~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~  366 (922)
                      .+.. | ..|+++++|++|++++|+++.+| ..++++++|++|++++|. +..+++..++++++|++|++++|.+..   
T Consensus        84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~---  159 (680)
T 1ziw_A           84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQA---  159 (680)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCC---
T ss_pred             ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccc---
Confidence            6666 4 35667777777777777666654 346667777777777664 444444446667777777777666542   


Q ss_pred             ccCCcccccccCccc--CCCCCCCCEEEeeecCCCCCC
Q 002432          367 DEGSSSKKSKASLDE--LMPLPRLTTLEIAVENDNALP  402 (922)
Q Consensus       367 ~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~  402 (922)
                                .....  ...+++|+.|++++|....++
T Consensus       160 ----------~~~~~~~~~~~~~L~~L~L~~n~l~~~~  187 (680)
T 1ziw_A          160 ----------LKSEELDIFANSSLKKLELSSNQIKEFS  187 (680)
T ss_dssp             ----------BCHHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred             ----------cCHHHhhccccccccEEECCCCcccccC
Confidence                      11111  123456667777666554443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.5e-40  Score=396.14  Aligned_cols=593  Identities=16%  Similarity=0.052  Sum_probs=299.4

Q ss_pred             cCcceEEEeecCCCC-CCCC--CC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chh---hhc
Q 002432          206 LKKCYAISWIDSSGG-ELPE--GL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSS---IDL  277 (922)
Q Consensus       206 ~~~l~~L~l~~~~~~-~l~~--~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~---i~~  277 (922)
                      .+++++|++++|.+. .+|.  .+ .+++|++|++++|....  .+|..++.++++|++|++++|.+... |..   +++
T Consensus        99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  176 (768)
T 3rgz_A           99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF--PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG  176 (768)
T ss_dssp             CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEEC--CSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred             CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCC--cCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence            345555555555542 2333  22 55555555555554332  34433334555556666655555532 333   455


Q ss_pred             cCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEcc
Q 002432          278 LVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMS  357 (922)
Q Consensus       278 L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~  357 (922)
                      +++|++|++++|.+.....+..+++|++|++++|+++..+..++++++|++|++++|...+.+|.. ++++++|++|+++
T Consensus       177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls  255 (768)
T 3rgz_A          177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNIS  255 (768)
T ss_dssp             CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECC
T ss_pred             CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECC
Confidence            555666666555554422235556666666666655533223555666666666655422233333 5556666666666


Q ss_pred             CCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC-CCCccc-c-ccccceeEEEEccCCCCCCccccccccc
Q 002432          358 NCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN-ALPEGF-F-VRELERFKILIGDRSFEPPVILSKDWFR  434 (922)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~-~~~L~~l~~~~~~~~~~~~~~l~~~~~~  434 (922)
                      +|.+.+             .. ... .+++|++|++++|... .+|..+ . +++|+.|.+......            +
T Consensus       256 ~n~l~~-------------~~-~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~------------~  308 (768)
T 3rgz_A          256 SNQFVG-------------PI-PPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY------------G  308 (768)
T ss_dssp             SSCCEE-------------SC-CCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE------------E
T ss_pred             CCcccC-------------cc-Ccc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC------------C
Confidence            555442             11 111 4555666666555533 444433 1 244444443211000            0


Q ss_pred             cccccccccccccceeeEeccccc--chhhhcccCCcceeEEeeccccCcccccccccccccc-CCcEEEEecCCCceEe
Q 002432          435 ISRSHFLILDHQSLRMLKLKLNWK--TICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFS-QLKHLLVQNNPDLLFI  511 (922)
Q Consensus       435 ~~~~~~~~~~~~~l~~l~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~-~L~~L~l~~~~~l~~i  511 (922)
                      ..+..+.-++  .++.+++..+.-  .+.......+++|+.|++.++......+..+  ..++ +|++|+++++.....+
T Consensus       309 ~~p~~~~~l~--~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~~L~~L~Ls~N~l~~~~  384 (768)
T 3rgz_A          309 AVPPFFGSCS--LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL--TNLSASLLTLDLSSNNFSGPI  384 (768)
T ss_dssp             CCCGGGGGCT--TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH--HHHTTTCSEEECCSSEEEEEC
T ss_pred             ccchHHhcCC--CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH--HhhhcCCcEEEccCCCcCCCc
Confidence            0000011112  444444443311  1111012234555555555543222222222  2233 5555555555321111


Q ss_pred             ecCcccccCcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccch
Q 002432          512 VDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMK  591 (922)
Q Consensus       512 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~  591 (922)
                      +   .......+++|+.|+++++.-...++..   ...+++|+.|++.+| .+....+ ..+..+++|+.|++++|....
T Consensus       385 ~---~~~~~~~~~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~N-~l~~~~p-~~l~~l~~L~~L~L~~n~l~~  456 (768)
T 3rgz_A          385 L---PNLCQNPKNTLQELYLQNNGFTGKIPPT---LSNCSELVSLHLSFN-YLSGTIP-SSLGSLSKLRDLKLWLNMLEG  456 (768)
T ss_dssp             C---TTTTCSTTCCCCEEECCSSEEEEECCGG---GGGCTTCCEEECCSS-EEESCCC-GGGGGCTTCCEEECCSSCCCS
T ss_pred             C---hhhhhcccCCccEEECCCCccccccCHH---HhcCCCCCEEECcCC-cccCccc-HHHhcCCCCCEEECCCCcccC
Confidence            1   1111112455666666555432222221   344556666666655 2332222 234555666666666554222


Q ss_pred             hhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccC
Q 002432          592 EIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHN  671 (922)
Q Consensus       592 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~  671 (922)
                      .++..               ...+++|+.|+++++.-...             .+..+..+++|+.|++++|.++...+.
T Consensus       457 ~~p~~---------------~~~l~~L~~L~L~~N~l~~~-------------~p~~l~~l~~L~~L~L~~N~l~~~~p~  508 (768)
T 3rgz_A          457 EIPQE---------------LMYVKTLETLILDFNDLTGE-------------IPSGLSNCTNLNWISLSNNRLTGEIPK  508 (768)
T ss_dssp             CCCGG---------------GGGCTTCCEEECCSSCCCSC-------------CCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             cCCHH---------------HcCCCCceEEEecCCcccCc-------------CCHHHhcCCCCCEEEccCCccCCcCCh
Confidence            22211               12455666666665543222             122334566777777777765533222


Q ss_pred             CCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCC--------------------
Q 002432          672 QTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPP--------------------  731 (922)
Q Consensus       672 ~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~--------------------  731 (922)
                      .+ ..+++|++|++++|.-...+|  ..+..+++|+.|++++|+-...++..-+......                    
T Consensus       509 ~~-~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (768)
T 3rgz_A          509 WI-GRLENLAILKLSNNSFSGNIP--AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK  585 (768)
T ss_dssp             GG-GGCTTCCEEECCSSCCEEECC--GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCT
T ss_pred             HH-hcCCCCCEEECCCCcccCcCC--HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccc
Confidence            21 245667777777653333333  2356667777777776643334432111100000                    


Q ss_pred             ------------------cccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccc
Q 002432          732 ------------------CFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQL  793 (922)
Q Consensus       732 ------------------~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~  793 (922)
                                        ...++.++.+++....--..++..+  ..+++|+.|++++|.--..+|..            
T Consensus       586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~--~~l~~L~~LdLs~N~l~g~ip~~------------  651 (768)
T 3rgz_A          586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF--DNNGSMMFLDMSYNMLSGYIPKE------------  651 (768)
T ss_dssp             TCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC--SSSBCCCEEECCSSCCBSCCCGG------------
T ss_pred             cccccccccccccccchhhhccccccccccccceecccCchhh--hccccccEEECcCCcccccCCHH------------
Confidence                              0000001111111100001112222  25788999999886444466554            


Q ss_pred             cCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCc-ccchhHHhhcCCCCeEEEecccce
Q 002432          794 HVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSA-SVPIGLLEKFHGLENLNLSFCSYK  872 (922)
Q Consensus       794 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~-~lp~~~l~~l~~L~~L~l~~c~l~  872 (922)
                                ++.+++|+.|++++|.+....|..   ++.+++|+.|++++|.+. .+|.. +..+++|++|++++|++.
T Consensus       652 ----------l~~l~~L~~L~Ls~N~l~g~ip~~---l~~L~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          652 ----------IGSMPYLFILNLGHNDISGSIPDE---VGDLRGLNILDLSSNKLDGRIPQA-MSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             ----------GGGCTTCCEEECCSSCCCSCCCGG---GGGCTTCCEEECCSSCCEECCCGG-GGGCCCCSEEECCSSEEE
T ss_pred             ----------HhccccCCEEeCcCCccCCCCChH---HhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECcCCccc
Confidence                      378999999999999998776766   448899999999998887 56655 479999999999999999


Q ss_pred             EEecCCccccccceEeccccccccccc
Q 002432          873 ELFSNGGQVHLIKKLELICLNDLEYLW  899 (922)
Q Consensus       873 ~l~~~~~~~~sL~~L~i~~c~~L~~l~  899 (922)
                      +..|..+.+.++....+.+||.+=..|
T Consensus       718 g~iP~~~~~~~~~~~~~~gN~~Lcg~~  744 (768)
T 3rgz_A          718 GPIPEMGQFETFPPAKFLNNPGLCGYP  744 (768)
T ss_dssp             EECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred             ccCCCchhhccCCHHHhcCCchhcCCC
Confidence            998988888888888888988764433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.6e-38  Score=378.64  Aligned_cols=584  Identities=16%  Similarity=0.113  Sum_probs=372.9

Q ss_pred             ecCCCCCCCCCccccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc
Q 002432          192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF  269 (922)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~  269 (922)
                      ..+.++..+|. ...+++++|++++|.+..++.. + ++++|++|++++|...   .++...|+++++||+|++++|.+.
T Consensus        11 cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~   86 (680)
T 1ziw_A           11 CSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS---KLEPELCQKLPMLKVLNLQHNELS   86 (680)
T ss_dssp             CCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC---CCCTTHHHHCTTCCEEECCSSCCC
T ss_pred             CCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC---ccCHHHHhcccCcCEEECCCCccC
Confidence            34445555664 4568999999999999888764 3 8999999999999876   566666799999999999999999


Q ss_pred             cCch-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCccCcchh
Q 002432          270 SLPS-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVI  345 (922)
Q Consensus       270 ~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l  345 (922)
                      .+|. .|+++++|++|++++|.+..  +..|+++++|++|++++|.++.. |..++++++|++|++++|. +..+++..+
T Consensus        87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~  165 (680)
T 1ziw_A           87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEEL  165 (680)
T ss_dssp             CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHH
T ss_pred             ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHh
Confidence            9987 69999999999999999987  47899999999999999998865 5568999999999999986 777776545


Q ss_pred             C--CCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCC-----CccccccccceeEEEEc
Q 002432          346 A--SFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL-----PEGFFVRELERFKILIG  418 (922)
Q Consensus       346 ~--~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----~~~~~~~~L~~l~~~~~  418 (922)
                      +  ++++|++|++++|.+..             ..+..+..+++|+.|++.++.....     +..+...          
T Consensus       166 ~~~~~~~L~~L~L~~n~l~~-------------~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~----------  222 (680)
T 1ziw_A          166 DIFANSSLKKLELSSNQIKE-------------FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT----------  222 (680)
T ss_dssp             GGGTTCEESEEECTTCCCCC-------------BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTS----------
T ss_pred             hccccccccEEECCCCcccc-------------cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhc----------
Confidence            4  56899999999998774             3446677788888888776543200     0000111          


Q ss_pred             cCCCCCCccccccccccccccccccccccceeeEecccccchhhhcccCC-----cceeEEeeccccCcccccccccccc
Q 002432          419 DRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGI-----RKVEYLCLDKFQGVKNILFELDTQG  493 (922)
Q Consensus       419 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~~~  493 (922)
                                                  .++.+.+..+  .+....+.++     ++|+.|+++++......+..+  ..
T Consensus       223 ----------------------------~L~~L~L~~n--~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~  270 (680)
T 1ziw_A          223 ----------------------------SIRNLSLSNS--QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF--AW  270 (680)
T ss_dssp             ----------------------------CCCEEECTTS--CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT--TT
T ss_pred             ----------------------------cccEEEccCC--cccccChhHhhccCcCCCCEEECCCCCcCccCcccc--cC
Confidence                                        3333333322  1111112222     337777777664333222222  46


Q ss_pred             ccCCcEEEEecCCCceEeecCcccccCcccccccccccccccccc-----cccc-cccccccccCcCeeEEecCCCcccc
Q 002432          494 FSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLK-----RICV-DRLSTESFSELRTMKVENCDELSNI  567 (922)
Q Consensus       494 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~~-~~~~~~~~~~L~~L~l~~c~~l~~~  567 (922)
                      +++|++|+++++......+     .....+++|+.|+++++..-.     .++. .......+++|+.|++.++ .+..+
T Consensus       271 l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~  344 (680)
T 1ziw_A          271 LPQLEYFFLEYNNIQHLFS-----HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGI  344 (680)
T ss_dssp             CTTCCEEECCSCCBSEECT-----TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCC
T ss_pred             cccccEeeCCCCccCccCh-----hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCC
Confidence            7778888887774322211     123456777777776532111     1110 1113455777888888777 45544


Q ss_pred             ccccccccCCCccEEEEccccc-chhhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcc
Q 002432          568 FVLSTTKCLPSLQRIAVIKCNK-MKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLF  646 (922)
Q Consensus       568 ~~~~~~~~l~~L~~L~l~~c~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~  646 (922)
                      + ...+..+++|++|++++|.. +..++.....            ....++|+.|+++++.-- .+.            .
T Consensus       345 ~-~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~------------~~~~~~L~~L~L~~n~l~-~~~------------~  398 (680)
T 1ziw_A          345 K-SNMFTGLINLKYLSLSNSFTSLRTLTNETFV------------SLAHSPLHILNLTKNKIS-KIE------------S  398 (680)
T ss_dssp             C-TTTTTTCTTCCEEECTTCBSCCCEECTTTTG------------GGTTSCCCEEECTTSCCC-EEC------------T
T ss_pred             C-hhHhccccCCcEEECCCCchhhhhcchhhhc------------ccccCcCceEECCCCCCC-eEC------------h
Confidence            2 24556778888888877641 2221111000            011256777777766422 211            1


Q ss_pred             cccccCCCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCC
Q 002432          647 NGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGP  726 (922)
Q Consensus       647 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~  726 (922)
                      ..+..+++|+.|++++|.+...........+++|++|++++|. +..+++ ..+..+++|++|++++|. +..+..    
T Consensus       399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~~~~L~~L~l~~n~-l~~~~~----  471 (680)
T 1ziw_A          399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTR-NSFALVPSLQRLMLRRVA-LKNVDS----  471 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCT-TTTTTCTTCCEEECTTSC-CBCTTC----
T ss_pred             hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeCh-hhhhcCcccccchhcccc-cccccc----
Confidence            2234567788888888876643332233456778888888753 444432 346677788888887753 221100    


Q ss_pred             CCCCCcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeecc
Q 002432          727 GQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKI  806 (922)
Q Consensus       727 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  806 (922)
                       ....+..+++|+.|++++|. ++.++.... ..+++|++|++++| +++.++...            ... .....+..
T Consensus       472 -~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~------------~~~-~~~~~~~~  534 (680)
T 1ziw_A          472 -SPSPFQPLRNLTILDLSNNN-IANINDDML-EGLEKLEILDLQHN-NLARLWKHA------------NPG-GPIYFLKG  534 (680)
T ss_dssp             -SSCTTTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSS-CCGGGGSTT------------STT-SCCCTTTT
T ss_pred             -CCcccccCCCCCEEECCCCC-CCcCChhhh-ccccccCEEeCCCC-Cccccchhh------------ccC-CcchhhcC
Confidence             01123346778888887753 445544321 26777888888775 565553221            000 00012356


Q ss_pred             ccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCc--ccccc
Q 002432          807 FPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGG--QVHLI  884 (922)
Q Consensus       807 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~--~~~sL  884 (922)
                      +++|++|++++|++..+.++.|.   .+++|+.|++++|.++.+|.+.+.++++|+.|++++|.+..+++...  .+++|
T Consensus       535 l~~L~~L~L~~N~l~~i~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L  611 (680)
T 1ziw_A          535 LSHLHILNLESNGFDEIPVEVFK---DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL  611 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTT---TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTC
T ss_pred             CCCCCEEECCCCCCCCCCHHHcc---cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccccc
Confidence            77888888888877766555443   67788888888888888887777778888888888887777765432  36778


Q ss_pred             ceEecccccc
Q 002432          885 KKLELICLND  894 (922)
Q Consensus       885 ~~L~i~~c~~  894 (922)
                      +.|+++++|-
T Consensus       612 ~~l~l~~N~~  621 (680)
T 1ziw_A          612 TELDMRFNPF  621 (680)
T ss_dssp             SEEECTTCCC
T ss_pred             CEEEccCCCc
Confidence            8888876654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.9e-38  Score=373.15  Aligned_cols=522  Identities=16%  Similarity=0.167  Sum_probs=292.9

Q ss_pred             eEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccC
Q 002432          210 YAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDY  288 (922)
Q Consensus       210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~  288 (922)
                      ++++.+++.+..+|.... +++++|++++|...   .++...|.++++||+|++++|.+..+ |..|+++++|++|++++
T Consensus        14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~   89 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLK---ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG   89 (606)
T ss_dssp             TEEECTTSCCSSCCTTSC-TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CceEccCCCcccCCCCCC-CCcCEEECCCCCcC---EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence            356666666666665442 66777777777655   45555567777777777777777765 45677777777777777


Q ss_pred             CCCCC--ccccCCCCcCCEEEeecCCCcccc-hhhcCCCCCCEEeccCCCCCC--ccCcchhCCCCCCCEEEccCCcccc
Q 002432          289 STLGD--ITIIGKLKNLEILSLIESDIVEFP-EELGKLTKLRLLDLTNCFHLK--VIAPNVIASFTRLEELYMSNCFVEW  363 (922)
Q Consensus       289 ~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~--~~p~~~l~~L~~L~~L~L~~~~~~~  363 (922)
                      |.+..  |..|+++++|++|++++|+++.+| ..++++++|++|++++|. +.  .+|.. ++++++|++|++++|.+..
T Consensus        90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A           90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCCE
T ss_pred             CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-HhhcCCCCEEEccCCccee
Confidence            77665  566777777777777777777665 457777777777777765 44  34554 7777777777777776653


Q ss_pred             cccccCCcccccccCcccCCCCCC----CCEEEeeecCCCCCCccccccccceeEEEEccCCCCCCcccccccccccccc
Q 002432          364 KVEDEGSSSKKSKASLDELMPLPR----LTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSH  439 (922)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~l~~l~~----L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~  439 (922)
                                   ..+..++.+++    +.+|++++|....++...                                  
T Consensus       168 -------------~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~----------------------------------  200 (606)
T 3vq2_A          168 -------------ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA----------------------------------  200 (606)
T ss_dssp             -------------ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTT----------------------------------
T ss_pred             -------------cChhhhhhhhccccccceeeccCCCcceeCccc----------------------------------
Confidence                         22233333333    336777666655444321                                  


Q ss_pred             ccccccccceeeEecccccchhhhcccCCcceeEEeeccccCccc-cccccccccccCCcEEEEecC--CCceEeecCcc
Q 002432          440 FLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKN-ILFELDTQGFSQLKHLLVQNN--PDLLFIVDSRE  516 (922)
Q Consensus       440 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~l~~L~~L~l~~~--~~l~~i~~~~~  516 (922)
                         +..                       .+|+.|++.++..... .+..+  +.+++|+.+.+...  .....+.    
T Consensus       201 ---~~~-----------------------~~L~~L~L~~n~~~~~~~~~~~--~~l~~L~~l~l~~~~~~~~~~l~----  248 (606)
T 3vq2_A          201 ---FQG-----------------------IKLHELTLRGNFNSSNIMKTCL--QNLAGLHVHRLILGEFKDERNLE----  248 (606)
T ss_dssp             ---TTT-----------------------CEEEEEEEESCCSCHHHHHHHH--HTTTTCEEEEEEEECCTTSCCCS----
T ss_pred             ---ccC-----------------------ceeeeeeccCCccchhHHHHHh--ccccccccccccccccccCCccc----
Confidence               000                       1222222222211100 00011  22333333333211  0000000    


Q ss_pred             cccCcccc-----cccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccch
Q 002432          517 IVDCDAFP-----LLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMK  591 (922)
Q Consensus       517 ~~~~~~~~-----~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~  591 (922)
                      ......+.     .++.+.+.....+.....   ....+++|+.|++.++ .+..++   .+..+++|++|++++|.. +
T Consensus       249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~-~~~~l~---~l~~~~~L~~L~l~~n~l-~  320 (606)
T 3vq2_A          249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV---KFHCLANVSAMSLAGV-SIKYLE---DVPKHFKWQSLSIIRCQL-K  320 (606)
T ss_dssp             CCCGGGGTTGGGSEEEEEEECCCTTCCGGGG---SCGGGTTCSEEEEESC-CCCCCC---CCCTTCCCSEEEEESCCC-S
T ss_pred             ccChHHhhhhhhccHhheecccccccccccc---ccccCCCCCEEEecCc-cchhhh---hccccccCCEEEcccccC-c
Confidence            00011122     222333322333222211   1455667777777766 334442   445666777777777653 4


Q ss_pred             hhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeecc-
Q 002432          592 EIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWH-  670 (922)
Q Consensus       592 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-  670 (922)
                      .++.                . .+++|+.|+++++..+..+.               +..+++|+.|++++|.++.+.. 
T Consensus       321 ~lp~----------------~-~l~~L~~L~l~~n~~~~~~~---------------~~~l~~L~~L~ls~n~l~~~~~~  368 (606)
T 3vq2_A          321 QFPT----------------L-DLPFLKSLTLTMNKGSISFK---------------KVALPSLSYLDLSRNALSFSGCC  368 (606)
T ss_dssp             SCCC----------------C-CCSSCCEEEEESCSSCEECC---------------CCCCTTCCEEECCSSCEEEEEEC
T ss_pred             cccc----------------C-CCCccceeeccCCcCccchh---------------hccCCCCCEEECcCCccCCCcch
Confidence            3331                1 45667777776665444321               1246777777777776665421 


Q ss_pred             CCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCcc
Q 002432          671 NQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELT  750 (922)
Q Consensus       671 ~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~  750 (922)
                      ......+++|++|++++|. ++.++  ..+..+++|++|++++|. +..+...      .....+++|++|++++|....
T Consensus       369 ~~~~~~~~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~------~~~~~l~~L~~L~l~~n~l~~  438 (606)
T 3vq2_A          369 SYSDLGTNSLRHLDLSFNG-AIIMS--ANFMGLEELQHLDFQHST-LKRVTEF------SAFLSLEKLLYLDISYTNTKI  438 (606)
T ss_dssp             CHHHHCCSCCCEEECCSCS-EEEEC--CCCTTCTTCCEEECTTSE-EESTTTT------TTTTTCTTCCEEECTTSCCEE
T ss_pred             hhhhccCCcccEeECCCCc-cccch--hhccCCCCCCeeECCCCc-cCCccCh------hhhhccccCCEEECcCCCCCc
Confidence            1111346777777777753 55554  335667777777777752 2222110      112246777777777776544


Q ss_pred             ccCCCcCcCCCCCccEEEEecCCCccc--cccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCC
Q 002432          751 CLYPGLHTSEWPELKKLEVFSCDKLNT--FASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDF  828 (922)
Q Consensus       751 ~l~~~~~~~~l~~L~~L~l~~c~~L~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  828 (922)
                      ..+..+.  .+++|++|++++| ++..  +|..                      +..+++|++|++++|.+....+..+
T Consensus       439 ~~~~~~~--~l~~L~~L~l~~n-~l~~~~~~~~----------------------~~~l~~L~~L~Ls~n~l~~~~~~~~  493 (606)
T 3vq2_A          439 DFDGIFL--GLTSLNTLKMAGN-SFKDNTLSNV----------------------FANTTNLTFLDLSKCQLEQISWGVF  493 (606)
T ss_dssp             CCTTTTT--TCTTCCEEECTTC-EEGGGEECSC----------------------CTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             cchhhhc--CCCCCCEEECCCC-cCCCcchHHh----------------------hccCCCCCEEECCCCcCCccChhhh
Confidence            4444443  6777777777776 3332  2322                      3557777777777777776666554


Q ss_pred             CCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCcccc-ccceEecccccc
Q 002432          829 PQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVH-LIKKLELICLND  894 (922)
Q Consensus       829 ~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~~-sL~~L~i~~c~~  894 (922)
                      .   .+++|++|++++|.+..++...+.++++|++|++++|.+..+++....++ +|+.|+++++|-
T Consensus       494 ~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          494 D---TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             T---TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred             c---ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc
Confidence            3   66777777777777777655555677777777777777777766544443 577777776554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.3e-37  Score=365.50  Aligned_cols=530  Identities=18%  Similarity=0.187  Sum_probs=270.5

Q ss_pred             EEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCC
Q 002432          211 AISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYS  289 (922)
Q Consensus       211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~  289 (922)
                      +++..+..+..+|... -..+++|++++|.+.   .++...|.++++||+|++++|.+..+ |..|+++++|++|++++|
T Consensus        16 ~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n   91 (606)
T 3t6q_A           16 TYNCENLGLNEIPGTL-PNSTECLEFSFNVLP---TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN   91 (606)
T ss_dssp             EEECTTSCCSSCCTTS-CTTCCEEECTTCCCS---EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             eEECCCCCcccCcCCC-CCcCcEEEccCCccC---cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence            4455555555555543 135677777766654   45444456777777777777766654 556677777777777777


Q ss_pred             CCCC--ccccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccccc
Q 002432          290 TLGD--ITIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVE  366 (922)
Q Consensus       290 ~l~~--p~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~  366 (922)
                      .+..  |..|+++++|++|++++|+++.+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+..   
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~---  167 (606)
T 3t6q_A           92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHY---  167 (606)
T ss_dssp             CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCE---
T ss_pred             cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccc---
Confidence            7665  45667777777777777766665 4456677777777777764 555432224456777777777766553   


Q ss_pred             ccCCcccccccCcccCCCCCCCC--EEEeeecCCCCCCccccccccceeEEEEccCCCCCCccccccccccccccccccc
Q 002432          367 DEGSSSKKSKASLDELMPLPRLT--TLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILD  444 (922)
Q Consensus       367 ~~~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  444 (922)
                                ..+..++.+++|+  .|++++|....++...                                     +.
T Consensus       168 ----------~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~-------------------------------------~~  200 (606)
T 3t6q_A          168 ----------LSKEDMSSLQQATNLSLNLNGNDIAGIEPGA-------------------------------------FD  200 (606)
T ss_dssp             ----------ECHHHHHTTTTCCSEEEECTTCCCCEECTTT-------------------------------------TT
T ss_pred             ----------cChhhhhhhcccceeEEecCCCccCccChhH-------------------------------------hh
Confidence                      2234455566666  5666655544333221                                     00


Q ss_pred             cccceeeEecccccchhhhcccCC--cceeEEeeccccCccc--cccccccccccCCcEEEEecCCCceEeecCcccccC
Q 002432          445 HQSLRMLKLKLNWKTICLRKLQGI--RKVEYLCLDKFQGVKN--ILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDC  520 (922)
Q Consensus       445 ~~~l~~l~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~--~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~  520 (922)
                      ...++.+++..+. .+... ..++  ..++.+.+..+.....  +.... ...+.                         
T Consensus       201 ~~~L~~L~l~~~~-~~~~~-~~~l~~~~l~~l~~~~~~~~~~~~i~~~~-~~~l~-------------------------  252 (606)
T 3t6q_A          201 SAVFQSLNFGGTQ-NLLVI-FKGLKNSTIQSLWLGTFEDMDDEDISPAV-FEGLC-------------------------  252 (606)
T ss_dssp             TCEEEEEECTTCS-CHHHH-HHHTTTCEEEEEECCCCTTSCCCCCCGGG-GGGGG-------------------------
T ss_pred             hccccccccCCch-hHHHH-hhhccccchhheechhhccccccccChhH-hchhh-------------------------
Confidence            0012222222110 00000 0000  1122222222111100  00000 00111                         


Q ss_pred             cccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccCCCC
Q 002432          521 DAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEE  600 (922)
Q Consensus       521 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  600 (922)
                        -.+|+.|+++++. +..++..  ....+++|+.|++.++ .++.++.  .+..+++|++|++++|. ++.++...   
T Consensus       253 --~~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~l~~n-~l~~lp~--~l~~l~~L~~L~l~~n~-l~~~~~~~---  320 (606)
T 3t6q_A          253 --EMSVESINLQKHY-FFNISSN--TFHCFSGLQELDLTAT-HLSELPS--GLVGLSTLKKLVLSANK-FENLCQIS---  320 (606)
T ss_dssp             --GSEEEEEECTTCC-CSSCCTT--TTTTCTTCSEEECTTS-CCSCCCS--SCCSCTTCCEEECTTCC-CSBGGGGC---
T ss_pred             --cCceeEEEeecCc-cCccCHH--HhccccCCCEEeccCC-ccCCCCh--hhcccccCCEEECccCC-cCcCchhh---
Confidence              0134444444432 2222111  1334556666666655 3444422  34455666666666543 22222111   


Q ss_pred             CCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeecc-CCCcccccC
Q 002432          601 PDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWH-NQTPCCFQR  679 (922)
Q Consensus       601 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~l~~  679 (922)
                                 ...+++|+.|.++++.....++.            ..+..+++|+.|++++|.++.+.. ......+++
T Consensus       321 -----------~~~l~~L~~L~l~~n~~~~~~~~------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  377 (606)
T 3t6q_A          321 -----------ASNFPSLTHLSIKGNTKRLELGT------------GCLENLENLRELDLSHDDIETSDCCNLQLRNLSH  377 (606)
T ss_dssp             -----------GGGCTTCSEEECCSCSSCCBCCS------------STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTT
T ss_pred             -----------hhccCcCCEEECCCCCcccccch------------hhhhccCcCCEEECCCCccccccCcchhcccCCC
Confidence                       12455666666665543322221            112346667777777776655431 111234567


Q ss_pred             ccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcC
Q 002432          680 LTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTS  759 (922)
Q Consensus       680 L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~  759 (922)
                      |++|++++| .+..+++ ..+..+++|++|++++| .+.......      ....+++|++|++++|..-...+..+.  
T Consensus       378 L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~--  446 (606)
T 3t6q_A          378 LQSLNLSYN-EPLSLKT-EAFKECPQLELLDLAFT-RLKVKDAQS------PFQNLHLLKVLNLSHSLLDISSEQLFD--  446 (606)
T ss_dssp             CCEEECCSC-SCEEECT-TTTTTCTTCSEEECTTC-CEECCTTCC------TTTTCTTCCEEECTTCCCBTTCTTTTT--
T ss_pred             CCEEECCCC-cCCcCCH-HHhcCCccCCeEECCCC-cCCCcccch------hhhCcccCCEEECCCCccCCcCHHHHh--
Confidence            777777764 3444322 33566677777777665 222221111      122356677777776643333333333  


Q ss_pred             CCCCccEEEEecCCCccc--cccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCc
Q 002432          760 EWPELKKLEVFSCDKLNT--FASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSL  837 (922)
Q Consensus       760 ~l~~L~~L~l~~c~~L~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL  837 (922)
                      .+++|++|++++|+ +..  ++..                    ..+..+++|++|++++|.+..+.+..+.   .+++|
T Consensus       447 ~l~~L~~L~L~~n~-l~~~~~~~~--------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L  502 (606)
T 3t6q_A          447 GLPALQHLNLQGNH-FPKGNIQKT--------------------NSLQTLGRLEILVLSFCDLSSIDQHAFT---SLKMM  502 (606)
T ss_dssp             TCTTCCEEECTTCB-CGGGEECSS--------------------CGGGGCTTCCEEECTTSCCCEECTTTTT---TCTTC
T ss_pred             CCCCCCEEECCCCC-CCccccccc--------------------hhhccCCCccEEECCCCccCccChhhhc---cccCC
Confidence            56777777777653 322  1110                    1234567777777777776666555543   56677


Q ss_pred             cEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCC-ccccccceEecccccc
Q 002432          838 KDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNG-GQVHLIKKLELICLND  894 (922)
Q Consensus       838 ~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~-~~~~sL~~L~i~~c~~  894 (922)
                      +.|++++|.+..++...+..+++| .|++++|.+..+++.. ..+++|+.|++++||-
T Consensus       503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL  559 (606)
T ss_dssp             CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred             CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence            777777777766665556667777 7777777666665543 3466777777766553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.6e-37  Score=362.12  Aligned_cols=526  Identities=17%  Similarity=0.187  Sum_probs=351.2

Q ss_pred             EEecCCCCCCCCCccccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCc
Q 002432          190 FLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQ  267 (922)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~  267 (922)
                      +...+.++..+|. ...+++++|++++|.+..++.. + ++++|++|++++|...   .++...|.++++||+|++++|.
T Consensus        16 ~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~i~~~~~~~l~~L~~L~Ls~n~   91 (606)
T 3vq2_A           16 YQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE---TIEDKAWHGLHHLSNLILTGNP   91 (606)
T ss_dssp             EECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCC
T ss_pred             eEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc---ccCHHHhhchhhcCEeECCCCc
Confidence            3344556666665 5678999999999999888763 3 9999999999999876   6766667999999999999999


Q ss_pred             CccC-chhhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCCCc--ccchhhcCCCCCCEEeccCCCCCCccCc
Q 002432          268 LFSL-PSSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIV--EFPEELGKLTKLRLLDLTNCFHLKVIAP  342 (922)
Q Consensus       268 i~~l-p~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~  342 (922)
                      +..+ |..|+++++|++|++++|.+.. + ..++++++|++|++++|.++  .+|..++++++|++|++++|. +..+++
T Consensus        92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~  170 (606)
T 3vq2_A           92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITV  170 (606)
T ss_dssp             CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECT
T ss_pred             ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecCh
Confidence            9987 8899999999999999999987 4 78999999999999999998  579999999999999999986 777766


Q ss_pred             chhCCCCCCC----EEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC--CCCccc-cccccceeEE
Q 002432          343 NVIASFTRLE----ELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN--ALPEGF-FVRELERFKI  415 (922)
Q Consensus       343 ~~l~~L~~L~----~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~-~~~~L~~l~~  415 (922)
                      ..++.+++|+    +|++++|.+..              .+.......+|+.|++++|...  .+|..+ .+..++.+.+
T Consensus       171 ~~~~~l~~L~~~l~~L~l~~n~l~~--------------~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l  236 (606)
T 3vq2_A          171 NDLQFLRENPQVNLSLDMSLNPIDF--------------IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL  236 (606)
T ss_dssp             TTTHHHHHCTTCCCEEECTTCCCCE--------------ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEE
T ss_pred             hhhhhhhccccccceeeccCCCcce--------------eCcccccCceeeeeeccCCccchhHHHHHhccccccccccc
Confidence            5577766665    89999998873              2233333448999999988653  222222 4445555444


Q ss_pred             EEccCCCCCCccccccccccccccccccccccceeeEecccccchhhhcccCC--cceeEEeeccccCcccccccccccc
Q 002432          416 LIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGI--RKVEYLCLDKFQGVKNILFELDTQG  493 (922)
Q Consensus       416 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~  493 (922)
                      ..+......                      .+..+.    ...     ..++  -.++.+.+............  ...
T Consensus       237 ~~~~~~~~~----------------------~l~~~~----~~~-----~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~  283 (606)
T 3vq2_A          237 ILGEFKDER----------------------NLEIFE----PSI-----MEGLCDVTIDEFRLTYTNDFSDDIVK--FHC  283 (606)
T ss_dssp             EEECCTTSC----------------------CCSCCC----GGG-----GTTGGGSEEEEEEECCCTTCCGGGGS--CGG
T ss_pred             cccccccCC----------------------cccccC----hHH-----hhhhhhccHhheeccccccccccccc--ccc
Confidence            433221000                      000000    000     0011  13455555443333333222  245


Q ss_pred             ccCCcEEEEecCCCceEeecCcccccCcccccccccccccccccccccccccccccccCcCeeEEecCCCcccccccccc
Q 002432          494 FSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTT  573 (922)
Q Consensus       494 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  573 (922)
                      +++|+.|++.++.. ..+      ....                           .+++|+.|++.+|. +..++   .+
T Consensus       284 l~~L~~L~l~~~~~-~~l------~~l~---------------------------~~~~L~~L~l~~n~-l~~lp---~~  325 (606)
T 3vq2_A          284 LANVSAMSLAGVSI-KYL------EDVP---------------------------KHFKWQSLSIIRCQ-LKQFP---TL  325 (606)
T ss_dssp             GTTCSEEEEESCCC-CCC------CCCC---------------------------TTCCCSEEEEESCC-CSSCC---CC
T ss_pred             CCCCCEEEecCccc-hhh------hhcc---------------------------ccccCCEEEccccc-Ccccc---cC
Confidence            66777777766632 111      1122                           34455555555553 23332   11


Q ss_pred             ccCCCccEEEEcccccchhhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCC
Q 002432          574 KCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLP  653 (922)
Q Consensus       574 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~  653 (922)
                       .+++|++|++++|..+..+.                 ...+++|+.|+++++. +..+.          .....+..++
T Consensus       326 -~l~~L~~L~l~~n~~~~~~~-----------------~~~l~~L~~L~ls~n~-l~~~~----------~~~~~~~~~~  376 (606)
T 3vq2_A          326 -DLPFLKSLTLTMNKGSISFK-----------------KVALPSLSYLDLSRNA-LSFSG----------CCSYSDLGTN  376 (606)
T ss_dssp             -CCSSCCEEEEESCSSCEECC-----------------CCCCTTCCEEECCSSC-EEEEE----------ECCHHHHCCS
T ss_pred             -CCCccceeeccCCcCccchh-----------------hccCCCCCEEECcCCc-cCCCc----------chhhhhccCC
Confidence             45555555555543332221                 1234555555555442 11110          0012233577


Q ss_pred             CcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcc
Q 002432          654 NLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCF  733 (922)
Q Consensus       654 ~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~  733 (922)
                      +|+.|++++|.++.++.  ....+++|++|++++| .+...++...+..+++|++|++++|. +.....       ....
T Consensus       377 ~L~~L~L~~n~l~~~~~--~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-------~~~~  445 (606)
T 3vq2_A          377 SLRHLDLSFNGAIIMSA--NFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFD-------GIFL  445 (606)
T ss_dssp             CCCEEECCSCSEEEECC--CCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSC-CEECCT-------TTTT
T ss_pred             cccEeECCCCccccchh--hccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCC-CCccch-------hhhc
Confidence            88888888888777752  2345788999999885 45554443457788899999998874 333211       1223


Q ss_pred             cccccceeecccCCCccc-cCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcce
Q 002432          734 AFRRVTNISLCHLPELTC-LYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEE  812 (922)
Q Consensus       734 ~l~~L~~L~l~~c~~l~~-l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  812 (922)
                      .+++|++|++++|..... ++..+.  .+++|++|++++| +++.++..                     .+..+++|++
T Consensus       446 ~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~Ls~n-~l~~~~~~---------------------~~~~l~~L~~  501 (606)
T 3vq2_A          446 GLTSLNTLKMAGNSFKDNTLSNVFA--NTTNLTFLDLSKC-QLEQISWG---------------------VFDTLHRLQL  501 (606)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCT--TCTTCCEEECTTS-CCCEECTT---------------------TTTTCTTCCE
T ss_pred             CCCCCCEEECCCCcCCCcchHHhhc--cCCCCCEEECCCC-cCCccChh---------------------hhcccccCCE
Confidence            478899999988754442 454444  7899999999987 56555432                     1366899999


Q ss_pred             EeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcC-CCCeEEEecccceE
Q 002432          813 LGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFH-GLENLNLSFCSYKE  873 (922)
Q Consensus       813 L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~-~L~~L~l~~c~l~~  873 (922)
                      |++++|++....|..+.   .+++|++|+|++|.+..+|.. +..++ +|+.|++++|++.-
T Consensus       502 L~Ls~N~l~~~~~~~~~---~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          502 LNMSHNNLLFLDSSHYN---QLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             EECCSSCCSCEEGGGTT---TCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCCCCC
T ss_pred             EECCCCcCCCcCHHHcc---CCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCCccc
Confidence            99999999887776654   788999999999999999988 56776 69999999998764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5e-36  Score=353.99  Aligned_cols=531  Identities=15%  Similarity=0.099  Sum_probs=345.6

Q ss_pred             ecCCCCCCCCCccccCcceEEEeecCCCCCCCC-CC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc
Q 002432          192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPE-GL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF  269 (922)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~  269 (922)
                      ..+.++..+|. ..++.+++|++++|.+..+++ .+ ++++|++|++++|...   .++...|.++++|++|++++|.+.
T Consensus        19 c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~   94 (606)
T 3t6q_A           19 CENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY---WIHEDTFQSQHRLDTLVLTANPLI   94 (606)
T ss_dssp             CTTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCS
T ss_pred             CCCCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc---eeChhhccCccccCeeeCCCCccc
Confidence            34445555554 567789999999999988854 33 9999999999999876   565566799999999999999998


Q ss_pred             cC-chhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccc-hhhcCCCCCCEEeccCCCCCCccCcchh
Q 002432          270 SL-PSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFP-EELGKLTKLRLLDLTNCFHLKVIAPNVI  345 (922)
Q Consensus       270 ~l-p~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~l  345 (922)
                      .+ |..++++++|++|++++|.+..  +..++++++|++|++++|.++.++ ..+..+++|++|++++|. +..+++..+
T Consensus        95 ~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~  173 (606)
T 3t6q_A           95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDM  173 (606)
T ss_dssp             EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHH
T ss_pred             ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhh
Confidence            76 7799999999999999999988  688999999999999999999763 345559999999999986 888877779


Q ss_pred             CCCCCCC--EEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccc-cccccceeEEEEccCCC
Q 002432          346 ASFTRLE--ELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGF-FVRELERFKILIGDRSF  422 (922)
Q Consensus       346 ~~L~~L~--~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~~~~~~~~~  422 (922)
                      +.+++|+  +|++++|.+..             . +.......+|+.|+++++.  .++..+ .+.++....+..+... 
T Consensus       174 ~~l~~L~~l~L~l~~n~l~~-------------~-~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~~~~~-  236 (606)
T 3t6q_A          174 SSLQQATNLSLNLNGNDIAG-------------I-EPGAFDSAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFE-  236 (606)
T ss_dssp             HTTTTCCSEEEECTTCCCCE-------------E-CTTTTTTCEEEEEECTTCS--CHHHHHHHTTTCEEEEEECCCCT-
T ss_pred             hhhcccceeEEecCCCccCc-------------c-ChhHhhhccccccccCCch--hHHHHhhhccccchhheechhhc-
Confidence            9999999  89999998874             2 2233344688999998775  122211 2222222222111110 


Q ss_pred             CCCccccccccccccccccccccccceeeEecccccchhhhcccCC--cceeEEeeccccCccccccccccccccCCcEE
Q 002432          423 EPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGI--RKVEYLCLDKFQGVKNILFELDTQGFSQLKHL  500 (922)
Q Consensus       423 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L  500 (922)
                                              .+....       +......++  .+|+.|++.++....-....+  ..+++|++|
T Consensus       237 ------------------------~~~~~~-------i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L  283 (606)
T 3t6q_A          237 ------------------------DMDDED-------ISPAVFEGLCEMSVESINLQKHYFFNISSNTF--HCFSGLQEL  283 (606)
T ss_dssp             ------------------------TSCCCC-------CCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT--TTCTTCSEE
T ss_pred             ------------------------cccccc-------cChhHhchhhcCceeEEEeecCccCccCHHHh--ccccCCCEE
Confidence                                    000000       000001122  268888888764332222222  567888888


Q ss_pred             EEecCCCceEeecCcccccCcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCcc
Q 002432          501 LVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQ  580 (922)
Q Consensus       501 ~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~  580 (922)
                      +++++. ++.++.     ....+++|+.|+++++.- ..+..  .....+++|+.|++.+|.....+ +...+..+++|+
T Consensus       284 ~l~~n~-l~~lp~-----~l~~l~~L~~L~l~~n~l-~~~~~--~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~  353 (606)
T 3t6q_A          284 DLTATH-LSELPS-----GLVGLSTLKKLVLSANKF-ENLCQ--ISASNFPSLTHLSIKGNTKRLEL-GTGCLENLENLR  353 (606)
T ss_dssp             ECTTSC-CSCCCS-----SCCSCTTCCEEECTTCCC-SBGGG--GCGGGCTTCSEEECCSCSSCCBC-CSSTTTTCTTCC
T ss_pred             eccCCc-cCCCCh-----hhcccccCCEEECccCCc-CcCch--hhhhccCcCCEEECCCCCccccc-chhhhhccCcCC
Confidence            888874 333321     134456666666666542 22211  12445666666666666332222 223345566666


Q ss_pred             EEEEcccccchhhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeee
Q 002432          581 RIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALEL  660 (922)
Q Consensus       581 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  660 (922)
                      +|++++|. ++.+..                                                 ....+..+++|+.|++
T Consensus       354 ~L~l~~n~-l~~~~~-------------------------------------------------~~~~~~~l~~L~~L~l  383 (606)
T 3t6q_A          354 ELDLSHDD-IETSDC-------------------------------------------------CNLQLRNLSHLQSLNL  383 (606)
T ss_dssp             EEECCSSC-CCEEEE-------------------------------------------------STTTTTTCTTCCEEEC
T ss_pred             EEECCCCc-cccccC-------------------------------------------------cchhcccCCCCCEEEC
Confidence            66666643 221110                                                 0011234566777777


Q ss_pred             cccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccce
Q 002432          661 CEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTN  740 (922)
Q Consensus       661 ~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~  740 (922)
                      ++|.++.+....+ ..+++|++|++++| .++...+...+..+++|++|++++|. +.....       .....+++|++
T Consensus       384 ~~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-------~~~~~l~~L~~  453 (606)
T 3t6q_A          384 SYNEPLSLKTEAF-KECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSE-------QLFDGLPALQH  453 (606)
T ss_dssp             CSCSCEEECTTTT-TTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCC-CBTTCT-------TTTTTCTTCCE
T ss_pred             CCCcCCcCCHHHh-cCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCc-cCCcCH-------HHHhCCCCCCE
Confidence            7776666543332 24567777777774 33333333345667777777777763 222211       11223677777


Q ss_pred             eecccCCCccc-cCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhh
Q 002432          741 ISLCHLPELTC-LYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKD  819 (922)
Q Consensus       741 L~l~~c~~l~~-l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  819 (922)
                      |++++|.--.. ++.......+++|++|++++| +++.++..                     .+..+++|++|++++|+
T Consensus       454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~---------------------~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQH---------------------AFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             EECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTT---------------------TTTTCTTCCEEECCSSC
T ss_pred             EECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChh---------------------hhccccCCCEEECCCCc
Confidence            77777653321 221111237889999999987 56555332                     23668999999999999


Q ss_pred             hhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceE
Q 002432          820 IMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKE  873 (922)
Q Consensus       820 ~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~  873 (922)
                      +....+..+.   .+++| .|++++|.+..+|...++.+++|+.|++++|++.-
T Consensus       512 l~~~~~~~l~---~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          512 LTSSSIEALS---HLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             CCGGGGGGGT---TCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             cCcCChhHhC---ccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence            8887777654   77889 99999999999998888899999999999998764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=351.96  Aligned_cols=527  Identities=16%  Similarity=0.157  Sum_probs=308.8

Q ss_pred             EEecCCCCCCCCCccccCcceEEEeecCCCCCCCC-CC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCc
Q 002432          190 FLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPE-GL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQ  267 (922)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~  267 (922)
                      ......++..+|.  .++++++|++++|.+..+++ .+ ++++|++|++++|....  .++...|.++++||+|+|++|.
T Consensus         9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~--~i~~~~f~~L~~L~~L~Ls~N~   84 (844)
T 3j0a_A            9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL--TIDKEAFRNLPNLRILDLGSSK   84 (844)
T ss_dssp             EEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC--EECTTTTSSCTTCCEEECTTCC
T ss_pred             EEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc--ccCHHHhcCCCCCCEEECCCCc
Confidence            3344456777776  78899999999999977643 33 99999999999995432  6766667999999999999999


Q ss_pred             CccC-chhhhccCCCCEEEccCCCCCC--ccc--cCCCCcCCEEEeecCCCccc--chhhcCCCCCCEEeccCCCCCCcc
Q 002432          268 LFSL-PSSIDLLVNLQTLCLDYSTLGD--ITI--IGKLKNLEILSLIESDIVEF--PEELGKLTKLRLLDLTNCFHLKVI  340 (922)
Q Consensus       268 i~~l-p~~i~~L~~L~~L~L~~~~l~~--p~~--i~~L~~L~~L~L~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~  340 (922)
                      +..+ |..|+++++|++|+|++|.+..  |..  ++++++|++|++++|.++.+  +..++++++|++|++++|. +..+
T Consensus        85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~  163 (844)
T 3j0a_A           85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLV  163 (844)
T ss_dssp             CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCC
T ss_pred             CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCee
Confidence            9976 8899999999999999999876  544  99999999999999999865  3579999999999999986 6555


Q ss_pred             CcchhCCC--CCCCEEEccCCcccccccccCCcccccccCcccCCCCC------CCCEEEeeecCCC-CCCccc----cc
Q 002432          341 APNVIASF--TRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLP------RLTTLEIAVENDN-ALPEGF----FV  407 (922)
Q Consensus       341 p~~~l~~L--~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~-~~~~~~----~~  407 (922)
                      .+..++.+  ++|+.|++++|.+..             ..+..++.++      .|+.|++++|... ..+..+    ..
T Consensus       164 ~~~~l~~l~~~~L~~L~L~~n~l~~-------------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  230 (844)
T 3j0a_A          164 CEHELEPLQGKTLSFFSLAANSLYS-------------RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK  230 (844)
T ss_dssp             CSGGGHHHHHCSSCCCEECCSBSCC-------------CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred             CHHHcccccCCccceEECCCCcccc-------------ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence            44447777  899999999998774             2233333333      4999999988643 233322    11


Q ss_pred             cccceeEEEEccCCCCCCccccccccccccccccccccccceeeEecccccchhhhcccCCcceeEEeeccccCcccc-c
Q 002432          408 RELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNI-L  486 (922)
Q Consensus       408 ~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~  486 (922)
                      .++..+                                      .+....  +..  ..+..           ..... .
T Consensus       231 ~~l~~L--------------------------------------~l~~~~--~~~--~~~~~-----------~l~~~~~  257 (844)
T 3j0a_A          231 SQAFSL--------------------------------------ILAHHI--MGA--GFGFH-----------NIKDPDQ  257 (844)
T ss_dssp             CCBSEE--------------------------------------ECCSSC--CBC--SSSCS-----------SSTTGGG
T ss_pred             ccccce--------------------------------------eccccc--ccc--ccccc-----------ccCCCCh
Confidence            112222                                      111000  000  00000           00000 0


Q ss_pred             cccccccccCCcEEEEecCCCceEeecCcccccCcccccccccccccccccccccccccccccccCcCeeEEecCCCccc
Q 002432          487 FELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSN  566 (922)
Q Consensus       487 ~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  566 (922)
                      ..+.....++|+.|+++++... .+.    ......+++|+.|+++++. +..+..  .....+++|+.|++++| .+..
T Consensus       258 ~~f~~l~~~~L~~L~Ls~n~l~-~~~----~~~~~~l~~L~~L~L~~n~-i~~~~~--~~~~~l~~L~~L~Ls~N-~l~~  328 (844)
T 3j0a_A          258 NTFAGLARSSVRHLDLSHGFVF-SLN----SRVFETLKDLKVLNLAYNK-INKIAD--EAFYGLDNLQVLNLSYN-LLGE  328 (844)
T ss_dssp             TTTTTTTTSCCCEEECTTCCCC-EEC----SCCSSSCCCCCEEEEESCC-CCEECT--TTTTTCSSCCEEEEESC-CCSC
T ss_pred             hhhhccccCCccEEECCCCccc-ccC----hhhhhcCCCCCEEECCCCc-CCCCCh--HHhcCCCCCCEEECCCC-CCCc
Confidence            0010011245555555554321 110    0012344555555555443 222211  12445677777777776 4444


Q ss_pred             cccccccccCCCccEEEEcccccchhhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcc
Q 002432          567 IFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLF  646 (922)
Q Consensus       567 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~  646 (922)
                      +.+ ..+..+++|+.|+++++. +..++...              ...+++|+.|+++++. +..++             
T Consensus       329 ~~~-~~~~~l~~L~~L~L~~N~-i~~~~~~~--------------~~~l~~L~~L~Ls~N~-l~~i~-------------  378 (844)
T 3j0a_A          329 LYS-SNFYGLPKVAYIDLQKNH-IAIIQDQT--------------FKFLEKLQTLDLRDNA-LTTIH-------------  378 (844)
T ss_dssp             CCS-CSCSSCTTCCEEECCSCC-CCCCCSSC--------------SCSCCCCCEEEEETCC-SCCCS-------------
T ss_pred             cCH-HHhcCCCCCCEEECCCCC-CCccChhh--------------hcCCCCCCEEECCCCC-CCccc-------------
Confidence            422 355667777777777753 43333211              1235555555555542 11111             


Q ss_pred             cccccCCCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCC
Q 002432          647 NGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGP  726 (922)
Q Consensus       647 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~  726 (922)
                          .+++|+.|++++|.++.++.     ...+++.|++++ ++++.++....+..+++|++|++++| .+..+....  
T Consensus       379 ----~~~~L~~L~l~~N~l~~l~~-----~~~~l~~L~ls~-N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~--  445 (844)
T 3j0a_A          379 ----FIPSIPDIFLSGNKLVTLPK-----INLTANLIHLSE-NRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQ--  445 (844)
T ss_dssp             ----SCCSCSEEEEESCCCCCCCC-----CCTTCCEEECCS-CCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSS--
T ss_pred             ----CCCCcchhccCCCCcccccc-----cccccceeeccc-CccccCchhhhhhcCCccceeeCCCC-ccccccccc--
Confidence                25677777777777665532     235677777777 45666554445567777777777775 333221110  


Q ss_pred             CCCCCcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeecc
Q 002432          727 GQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKI  806 (922)
Q Consensus       727 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  806 (922)
                                                    ....+++|+.|++++| .+...+...                .....+..
T Consensus       446 ------------------------------~~~~~~~L~~L~Ls~N-~l~~~~~~~----------------~~~~~~~~  478 (844)
T 3j0a_A          446 ------------------------------TPSENPSLEQLFLGEN-MLQLAWETE----------------LCWDVFEG  478 (844)
T ss_dssp             ------------------------------SSCSCTTCCBCEEESC-CCSSSCCSC----------------CCSSCSSC
T ss_pred             ------------------------------ccccCCccccccCCCC-ccccccccc----------------cchhhhcC
Confidence                                          0113445555555543 332221100                00012244


Q ss_pred             ccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCccccccce
Q 002432          807 FPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKK  886 (922)
Q Consensus       807 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~~sL~~  886 (922)
                      +++|++|++++|.+..+.+..+.   .+++|+.|++++|.+..+|...+.  ++|+.|++++|.+....+..  +++|+.
T Consensus       479 l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~  551 (844)
T 3j0a_A          479 LSHLQVLYLNHNYLNSLPPGVFS---HLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSV  551 (844)
T ss_dssp             BCCEECCCCCHHHHTTCCTTSSS---SCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCE
T ss_pred             cccccEEECCCCcccccChhHcc---chhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCE
Confidence            56666666666666655554433   556666666666666666655443  56666666666666554433  345666


Q ss_pred             Eeccccc
Q 002432          887 LELICLN  893 (922)
Q Consensus       887 L~i~~c~  893 (922)
                      |+++++|
T Consensus       552 l~l~~Np  558 (844)
T 3j0a_A          552 LDITHNK  558 (844)
T ss_dssp             EEEEEEC
T ss_pred             EEecCCC
Confidence            6665544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=353.84  Aligned_cols=538  Identities=15%  Similarity=0.110  Sum_probs=350.3

Q ss_pred             eEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCc-CccC-chhhhccCCCCEEEcc
Q 002432          210 YAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQ-LFSL-PSSIDLLVNLQTLCLD  287 (922)
Q Consensus       210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~-i~~l-p~~i~~L~~L~~L~L~  287 (922)
                      +..+.+++.+..+|.  -.+++++|++++|.+.   .++...|.++++|++|++++|. +..+ |..|+++++|++|+|+
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~---~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIR---TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCCC---EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcCC---ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            456777788888887  4578999999998765   4554556899999999999984 4456 6788999999999999


Q ss_pred             CCCCCC--ccccCCCCcCCEEEeecCCCcc-cchh--hcCCCCCCEEeccCCCCCCcc-CcchhCCCCCCCEEEccCCcc
Q 002432          288 YSTLGD--ITIIGKLKNLEILSLIESDIVE-FPEE--LGKLTKLRLLDLTNCFHLKVI-APNVIASFTRLEELYMSNCFV  361 (922)
Q Consensus       288 ~~~l~~--p~~i~~L~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~~-p~~~l~~L~~L~~L~L~~~~~  361 (922)
                      +|.+..  |..|+++++|++|++++|.++. +|..  ++++++|++|++++|. +..+ +...++++++|++|++++|.+
T Consensus        82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcC
Confidence            999876  6889999999999999998874 5554  8899999999999986 5554 333488999999999998877


Q ss_pred             cccccccCCcccccccCcccCCCC--CCCCEEEeeecCCCC-CCccccccccceeEEEEccCCCCCCccccccccccccc
Q 002432          362 EWKVEDEGSSSKKSKASLDELMPL--PRLTTLEIAVENDNA-LPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRS  438 (922)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~-~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~  438 (922)
                      ..             ..+..+..+  ++|+.|++++|.... .+..+            +.                   
T Consensus       161 ~~-------------~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~------------~~-------------------  196 (844)
T 3j0a_A          161 FL-------------VCEHELEPLQGKTLSFFSLAANSLYSRVSVDW------------GK-------------------  196 (844)
T ss_dssp             CC-------------CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC------------CS-------------------
T ss_pred             Ce-------------eCHHHcccccCCccceEECCCCccccccccch------------hh-------------------
Confidence            64             334455555  788888888776432 11110            00                   


Q ss_pred             cccccccccceeeEecccccchhhhcccCCcceeEEeeccccCccccccccc-cccccCCcEEEEecCCCceEeecCccc
Q 002432          439 HFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELD-TQGFSQLKHLLVQNNPDLLFIVDSREI  517 (922)
Q Consensus       439 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~l~~L~~L~l~~~~~l~~i~~~~~~  517 (922)
                          ..  .                 +.....|+.|+++++......+..+. .-...+++.+.+..+..-.        
T Consensus       197 ----~~--~-----------------~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~--------  245 (844)
T 3j0a_A          197 ----CM--N-----------------PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA--------  245 (844)
T ss_dssp             ----SS--C-----------------TTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC--------
T ss_pred             ----cC--C-----------------ccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc--------
Confidence                00  0                 00001355666655432222222111 0123466777766332100        


Q ss_pred             ccCcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccC
Q 002432          518 VDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIG  597 (922)
Q Consensus       518 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~  597 (922)
                        ...+.++...           ....+..-..++|+.|++.++ .+..+. ...+..+++|+.|+++++. ++.+....
T Consensus       246 --~~~~~~l~~~-----------~~~~f~~l~~~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-i~~~~~~~  309 (844)
T 3j0a_A          246 --GFGFHNIKDP-----------DQNTFAGLARSSVRHLDLSHG-FVFSLN-SRVFETLKDLKVLNLAYNK-INKIADEA  309 (844)
T ss_dssp             --SSSCSSSTTG-----------GGTTTTTTTTSCCCEEECTTC-CCCEEC-SCCSSSCCCCCEEEEESCC-CCEECTTT
T ss_pred             --cccccccCCC-----------ChhhhhccccCCccEEECCCC-cccccC-hhhhhcCCCCCEEECCCCc-CCCCChHH
Confidence              0001111110           000011111356777777666 344442 2345667777777777653 33332211


Q ss_pred             CCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCcccc
Q 002432          598 GEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCF  677 (922)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l  677 (922)
                                    ...+++|+.|+++++. +..+.            ...+..+++|+.|++++|.++.+....+ ..+
T Consensus       310 --------------~~~l~~L~~L~Ls~N~-l~~~~------------~~~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l  361 (844)
T 3j0a_A          310 --------------FYGLDNLQVLNLSYNL-LGELY------------SSNFYGLPKVAYIDLQKNHIAIIQDQTF-KFL  361 (844)
T ss_dssp             --------------TTTCSSCCEEEEESCC-CSCCC------------SCSCSSCTTCCEEECCSCCCCCCCSSCS-CSC
T ss_pred             --------------hcCCCCCCEEECCCCC-CCccC------------HHHhcCCCCCCEEECCCCCCCccChhhh-cCC
Confidence                          1345667777666653 22211            1233467888999999988877754433 457


Q ss_pred             cCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcC
Q 002432          678 QRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLH  757 (922)
Q Consensus       678 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~  757 (922)
                      ++|++|++++| .++.++      .+++|+.|++++| .+..++.           ...+++.|+++++ .++.++....
T Consensus       362 ~~L~~L~Ls~N-~l~~i~------~~~~L~~L~l~~N-~l~~l~~-----------~~~~l~~L~ls~N-~l~~l~~~~~  421 (844)
T 3j0a_A          362 EKLQTLDLRDN-ALTTIH------FIPSIPDIFLSGN-KLVTLPK-----------INLTANLIHLSEN-RLENLDILYF  421 (844)
T ss_dssp             CCCCEEEEETC-CSCCCS------SCCSCSEEEEESC-CCCCCCC-----------CCTTCCEEECCSC-CCCSSTTHHH
T ss_pred             CCCCEEECCCC-CCCccc------CCCCcchhccCCC-Ccccccc-----------cccccceeecccC-ccccCchhhh
Confidence            89999999985 566553      3788999999886 5554421           1456888888875 3444432222


Q ss_pred             cCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCC--CCCCCC
Q 002432          758 TSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFP--QDHLFG  835 (922)
Q Consensus       758 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~~  835 (922)
                      ...+++|+.|++++| ++...+...                    ....+++|+.|++++|.+...++....  ....++
T Consensus       422 ~~~l~~L~~L~Ls~N-~l~~~~~~~--------------------~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~  480 (844)
T 3j0a_A          422 LLRVPHLQILILNQN-RFSSCSGDQ--------------------TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS  480 (844)
T ss_dssp             HTTCTTCCEEEEESC-CCCCCCSSS--------------------SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBC
T ss_pred             hhcCCccceeeCCCC-ccccccccc--------------------ccccCCccccccCCCCccccccccccchhhhcCcc
Confidence            236899999999986 565543321                    124478999999999998755433221  134678


Q ss_pred             CccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCccccccceEeccccccccccccCCCCCCCcccccccE
Q 002432          836 SLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLNDLEYLWIPNSKMGDSILQNLEI  915 (922)
Q Consensus       836 sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~~sL~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~~  915 (922)
                      +|+.|++++|.+..+|...+.++++|+.|++++|.+..+++... .++|+.|++++ ++|+.++...       +.+|+.
T Consensus       481 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-~~~L~~L~Ls~-N~l~~~~~~~-------~~~L~~  551 (844)
T 3j0a_A          481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL-PANLEILDISR-NQLLAPNPDV-------FVSLSV  551 (844)
T ss_dssp             CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC-CSCCCEEEEEE-ECCCCCCSCC-------CSSCCE
T ss_pred             cccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh-hccccEEECCC-CcCCCCChhH-------hCCcCE
Confidence            99999999999999998888999999999999999998866554 48999999965 4666666443       457899


Q ss_pred             EEeeecC
Q 002432          916 LKTVARS  922 (922)
Q Consensus       916 l~l~~~~  922 (922)
                      +++++|.
T Consensus       552 l~l~~Np  558 (844)
T 3j0a_A          552 LDITHNK  558 (844)
T ss_dssp             EEEEEEC
T ss_pred             EEecCCC
Confidence            9999873

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=340.51  Aligned_cols=501  Identities=18%  Similarity=0.204  Sum_probs=288.4

Q ss_pred             cCCCCCCCCCccccCcceEEEeecCCCCCCCCC--CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCcc
Q 002432          193 RNGDVWEWPDEDALKKCYAISWIDSSGGELPEG--LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS  270 (922)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~  270 (922)
                      .+.++..+|. ...+++++|++++|.+..++..  .++++|++|++++|...   .++...|.++++||+|++++|.+..
T Consensus        15 ~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---~i~~~~~~~l~~L~~L~L~~n~l~~   90 (570)
T 2z63_A           15 MELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQS   90 (570)
T ss_dssp             CSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             CCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC---ccCcccccCchhCCEEeCcCCcCCc
Confidence            3345555554 4567888999999888777643  38888999999988765   5666667888999999999998887


Q ss_pred             Cc-hhhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCCCcc--cchhhcCCCCCCEEeccCCCCCCccCcchh
Q 002432          271 LP-SSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIVE--FPEELGKLTKLRLLDLTNCFHLKVIAPNVI  345 (922)
Q Consensus       271 lp-~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l  345 (922)
                      +| ..|+++++|++|++++|.+.. + ..++++++|++|++++|.++.  +|..++++++|++|++++|. +..+++..+
T Consensus        91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~  169 (570)
T 2z63_A           91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDL  169 (570)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGG
T ss_pred             cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHc
Confidence            65 678889999999999988887 4 468889999999999988874  68888889999999998875 777766557


Q ss_pred             CCCCCC----CEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCC--CCccc-cccccceeEEEEc
Q 002432          346 ASFTRL----EELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNA--LPEGF-FVRELERFKILIG  418 (922)
Q Consensus       346 ~~L~~L----~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~-~~~~L~~l~~~~~  418 (922)
                      +.+++|    +.|++++|.+..             ..+..+... +|+.|+++++....  ++..+ .+..++...+..+
T Consensus       170 ~~l~~L~~~~~~L~l~~n~l~~-------------~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~  235 (570)
T 2z63_A          170 RVLHQMPLLNLSLDLSLNPMNF-------------IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG  235 (570)
T ss_dssp             HHHHTCTTCCCEEECTTCCCCE-------------ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEE
T ss_pred             cchhccchhhhhcccCCCCcee-------------cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccc
Confidence            777777    788888887764             223444444 68888887664221  11110 1111111111100


Q ss_pred             cCCCCCCccccccccccccccccccccccceeeEecccccchhhhcccCCcceeEEeeccccCcccccccccccccc--C
Q 002432          419 DRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFS--Q  496 (922)
Q Consensus       419 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~--~  496 (922)
                      ..                                             ....+++.+.-.          .+  ..++  .
T Consensus       236 ~~---------------------------------------------~~~~~l~~~~~~----------~~--~~l~~l~  258 (570)
T 2z63_A          236 EF---------------------------------------------RNEGNLEKFDKS----------AL--EGLCNLT  258 (570)
T ss_dssp             EC---------------------------------------------CCCSSCEECCTT----------TT--GGGGGSE
T ss_pred             cc---------------------------------------------cCchhhhhcchh----------hh--ccccccc
Confidence            00                                             000000000000          00  0111  1


Q ss_pred             CcEEEEecCCCceEeecCcccccCcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccC
Q 002432          497 LKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCL  576 (922)
Q Consensus       497 L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l  576 (922)
                      ++.+.+.++.                             .+....  ......+++|+.|++.++ .++.++.  .+..+
T Consensus       259 l~~l~l~~~~-----------------------------~~~~~~--~~~~~~l~~L~~L~l~~~-~l~~l~~--~~~~~  304 (570)
T 2z63_A          259 IEEFRLAYLD-----------------------------YYLDDI--IDLFNCLTNVSSFSLVSV-TIERVKD--FSYNF  304 (570)
T ss_dssp             EEEEEEEETT-----------------------------EEESCS--TTTTGGGTTCSEEEEESC-EECSCCB--CCSCC
T ss_pred             hhhhhhhcch-----------------------------hhhhhc--hhhhcCcCcccEEEecCc-cchhhhh--hhccC
Confidence            2233333221                             111110  011334555666666555 3333321  23334


Q ss_pred             CCccEEEEcccccchhhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcc
Q 002432          577 PSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLE  656 (922)
Q Consensus       577 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~  656 (922)
                       +|++|++++|. +..++.                 ..+++|+.|.+.++.....++.               ..+++|+
T Consensus       305 -~L~~L~l~~n~-~~~l~~-----------------~~l~~L~~L~l~~n~~~~~~~~---------------~~~~~L~  350 (570)
T 2z63_A          305 -GWQHLELVNCK-FGQFPT-----------------LKLKSLKRLTFTSNKGGNAFSE---------------VDLPSLE  350 (570)
T ss_dssp             -CCSEEEEESCB-CSSCCB-----------------CBCSSCCEEEEESCBSCCBCCC---------------CBCTTCC
T ss_pred             -CccEEeeccCc-ccccCc-----------------ccccccCEEeCcCCcccccccc---------------ccCCCCC
Confidence             66666666653 222221                 1345555555554432222110               2456677


Q ss_pred             eeeecccceeeecc-CCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccc
Q 002432          657 ALELCEINVKSIWH-NQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAF  735 (922)
Q Consensus       657 ~L~l~~~~l~~~~~-~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l  735 (922)
                      .|++++|.++.... ......+++|++|++++| .+..+++.  +..+++|++|++++|. +.......      ....+
T Consensus       351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~------~~~~l  420 (570)
T 2z63_A          351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN--FLGLEQLEHLDFQHSN-LKQMSEFS------VFLSL  420 (570)
T ss_dssp             EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEE--EETCTTCCEEECTTSE-EESCTTSC------TTTTC
T ss_pred             EEeCcCCccCccccccccccccCccCEEECCCC-cccccccc--ccccCCCCEEEccCCc-cccccchh------hhhcC
Confidence            77777765554320 001124566777777764 34444332  5566677777776652 22221101      12235


Q ss_pred             cccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCc-cccccccccccccccccccCCCCCcceeeccccCcceEe
Q 002432          736 RRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKL-NTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELG  814 (922)
Q Consensus       736 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  814 (922)
                      ++|++|++++|......+..+.  .+++|++|++++|.-. ..+|..                      +..+++|++|+
T Consensus       421 ~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~p~~----------------------~~~l~~L~~L~  476 (570)
T 2z63_A          421 RNLIYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDI----------------------FTELRNLTFLD  476 (570)
T ss_dssp             TTCCEEECTTSCCEECCTTTTT--TCTTCCEEECTTCEEGGGEECSC----------------------CTTCTTCCEEE
T ss_pred             CCCCEEeCcCCcccccchhhhh--cCCcCcEEECcCCcCccccchhh----------------------hhcccCCCEEE
Confidence            6677777777654443443333  5777777777776322 134322                      25567777777


Q ss_pred             echhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEE
Q 002432          815 LSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKEL  874 (922)
Q Consensus       815 l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l  874 (922)
                      +++|++..+.+..+.   .+++|+.|++++|.+..+|...+.++++|+.|++++|++...
T Consensus       477 l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          477 LSQCQLEQLSPTAFN---SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CTTSCCCEECTTTTT---TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCCccccCChhhhh---cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            777777666555543   566777777777777777766666777777777777766543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.8e-34  Score=336.47  Aligned_cols=174  Identities=20%  Similarity=0.204  Sum_probs=125.0

Q ss_pred             EEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCC
Q 002432          212 ISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYST  290 (922)
Q Consensus       212 L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~  290 (922)
                      .+.+++.+..+|.... ++|++|++++|...   .++...|.++++||+|++++|.+..++ ..|+++++|++|++++|.
T Consensus        10 c~~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   85 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLT-AAMKSLDLSFNKIT---YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH   85 (549)
T ss_dssp             EECTTSCCSSCCSCCC-TTCCEEECCSSCCC---EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCccccccccCC-CCccEEECcCCccC---ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence            4555566667776442 67888888887655   444444578888888888888887664 567888888888888888


Q ss_pred             CCC-c-cccCCCCcCCEEEeecCCCcc--cchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccccc
Q 002432          291 LGD-I-TIIGKLKNLEILSLIESDIVE--FPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVE  366 (922)
Q Consensus       291 l~~-p-~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~  366 (922)
                      +.. + ..|+++++|++|++++|.++.  .|..++++++|++|++++|..++.+|...++++++|++|++++|.+..   
T Consensus        86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---  162 (549)
T 2z81_A           86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN---  162 (549)
T ss_dssp             CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---
T ss_pred             cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc---
Confidence            776 4 457888888888888887774  356678888888888888765677775557888888888888877664   


Q ss_pred             ccCCcccccccCcccCCCCCCCCEEEeeecCCCCCC
Q 002432          367 DEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALP  402 (922)
Q Consensus       367 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  402 (922)
                                ..+..++.+++|++|+++++....++
T Consensus       163 ----------~~~~~l~~l~~L~~L~l~~n~~~~~~  188 (549)
T 2z81_A          163 ----------YQSQSLKSIRDIHHLTLHLSESAFLL  188 (549)
T ss_dssp             ----------ECTTTTTTCSEEEEEEEECSBSTTHH
T ss_pred             ----------cChhhhhccccCceEecccCcccccc
Confidence                      44566777777888887766654433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-33  Score=329.36  Aligned_cols=506  Identities=15%  Similarity=0.165  Sum_probs=345.6

Q ss_pred             eEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccC
Q 002432          210 YAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDY  288 (922)
Q Consensus       210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~  288 (922)
                      +.++..+..+..+|... .+++++|++++|...   .++...|.++++|++|++++|.+..++ ..|+++++|++|++++
T Consensus        10 ~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~   85 (570)
T 2z63_A           10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (570)
T ss_dssp             TEEECCSSCCSSCCSSS-CSSCCEEECCSCCCC---EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cEEEeCCCCccccCCCc-cccccEEEccCCccC---ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence            44666666677777644 357999999999876   566666799999999999999998874 5789999999999999


Q ss_pred             CCCCC--ccccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCc--cCcchhCCCCCCCEEEccCCcccc
Q 002432          289 STLGD--ITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKV--IAPNVIASFTRLEELYMSNCFVEW  363 (922)
Q Consensus       289 ~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~~l~~L~~L~~L~L~~~~~~~  363 (922)
                      |.+..  |..|+++++|++|++++|+++.+|. .++++++|++|++++|. +..  +|.. ++++++|++|++++|.+..
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred             CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCccce
Confidence            99887  4789999999999999999998876 58999999999999986 654  5665 8999999999999998764


Q ss_pred             cccccCCcccccccCcccCCCCCCC----CEEEeeecCCCCCCccccccccceeEEEEccCCCCCCcccccccccccccc
Q 002432          364 KVEDEGSSSKKSKASLDELMPLPRL----TTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSH  439 (922)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~  439 (922)
                                   ..+..++.+++|    +.|++++|....++...                                  
T Consensus       164 -------------~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~----------------------------------  196 (570)
T 2z63_A          164 -------------IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA----------------------------------  196 (570)
T ss_dssp             -------------ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT----------------------------------
T ss_pred             -------------ecHHHccchhccchhhhhcccCCCCceecCHHH----------------------------------
Confidence                         233455555666    78888877655433321                                  


Q ss_pred             ccccccccceeeEecccccchhhhcccCCcceeEEeeccccCc-cccccccccccccCCcEEEEecCCCceEeecCcccc
Q 002432          440 FLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGV-KNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIV  518 (922)
Q Consensus       440 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~  518 (922)
                         +.                       ..+|+.|++.++... ......+  ..+++++.+.+.....           
T Consensus       197 ---~~-----------------------~~~L~~L~l~~n~~~~~~~~~~~--~~l~~l~~~~l~~~~~-----------  237 (570)
T 2z63_A          197 ---FK-----------------------EIRLHKLTLRNNFDSLNVMKTCI--QGLAGLEVHRLVLGEF-----------  237 (570)
T ss_dssp             ---TT-----------------------TCEEEEEEEESCCSCTTHHHHHH--HTTTTCEEEEEEEEEC-----------
T ss_pred             ---hc-----------------------cCcceeEecccccccccchhhhh--cCccccceeeeccccc-----------
Confidence               00                       013344444332111 1111111  2344444444321100           


Q ss_pred             cCccccccccccccccccccccccccccccccc--CcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhcc
Q 002432          519 DCDAFPLLELLSLQNLINLKRICVDRLSTESFS--ELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAI  596 (922)
Q Consensus       519 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~--~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  596 (922)
                        .....++.+.-..             ...++  .++.+.+.++..+....+ ..+..+++|++|+++++. ++.++..
T Consensus       238 --~~~~~l~~~~~~~-------------~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-l~~l~~~  300 (570)
T 2z63_A          238 --RNEGNLEKFDKSA-------------LEGLCNLTIEEFRLAYLDYYLDDII-DLFNCLTNVSSFSLVSVT-IERVKDF  300 (570)
T ss_dssp             --CCCSSCEECCTTT-------------TGGGGGSEEEEEEEEETTEEESCST-TTTGGGTTCSEEEEESCE-ECSCCBC
T ss_pred             --cCchhhhhcchhh-------------hccccccchhhhhhhcchhhhhhch-hhhcCcCcccEEEecCcc-chhhhhh
Confidence              0000111111000             11111  355666776654444422 456788999999999975 4444432


Q ss_pred             CCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCccc
Q 002432          597 GGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCC  676 (922)
Q Consensus       597 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~  676 (922)
                      .               ..+ +|+.|.+.+|.-- .++.               ..+++|+.|++++|.+......   ..
T Consensus       301 ~---------------~~~-~L~~L~l~~n~~~-~l~~---------------~~l~~L~~L~l~~n~~~~~~~~---~~  345 (570)
T 2z63_A          301 S---------------YNF-GWQHLELVNCKFG-QFPT---------------LKLKSLKRLTFTSNKGGNAFSE---VD  345 (570)
T ss_dssp             C---------------SCC-CCSEEEEESCBCS-SCCB---------------CBCSSCCEEEEESCBSCCBCCC---CB
T ss_pred             h---------------ccC-CccEEeeccCccc-ccCc---------------ccccccCEEeCcCCcccccccc---cc
Confidence            2               245 8999999888532 3321               2578999999999966544332   45


Q ss_pred             ccCccEEEeccCcCccccc-cHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCC
Q 002432          677 FQRLTRLIVWGCQKLKFMF-YASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPG  755 (922)
Q Consensus       677 l~~L~~L~l~~C~~L~~l~-~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~  755 (922)
                      +++|++|++++| .+.... ....+..+++|++|++++| .+..++..        ...+++|++|++++|... ..+..
T Consensus       346 ~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~--------~~~l~~L~~L~l~~n~l~-~~~~~  414 (570)
T 2z63_A          346 LPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN--------FLGLEQLEHLDFQHSNLK-QMSEF  414 (570)
T ss_dssp             CTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEE--------EETCTTCCEEECTTSEEE-SCTTS
T ss_pred             CCCCCEEeCcCC-ccCccccccccccccCccCEEECCCC-cccccccc--------ccccCCCCEEEccCCccc-cccch
Confidence            799999999996 455432 1245788999999999997 45555321        224789999999997533 33221


Q ss_pred             cCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhh-hhcCCCCCCCCCC
Q 002432          756 LHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIM-MLLQGDFPQDHLF  834 (922)
Q Consensus       756 ~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~  834 (922)
                      .....+++|++|++++|......+.                      .+..+++|++|++++|.+. ...|..+   ..+
T Consensus       415 ~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~l~~n~l~~~~~p~~~---~~l  469 (570)
T 2z63_A          415 SVFLSLRNLIYLDISHTHTRVAFNG----------------------IFNGLSSLEVLKMAGNSFQENFLPDIF---TEL  469 (570)
T ss_dssp             CTTTTCTTCCEEECTTSCCEECCTT----------------------TTTTCTTCCEEECTTCEEGGGEECSCC---TTC
T ss_pred             hhhhcCCCCCEEeCcCCcccccchh----------------------hhhcCCcCcEEECcCCcCccccchhhh---hcc
Confidence            1123799999999999743333332                      2366899999999999987 3455554   478


Q ss_pred             CCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCC-ccccccceEeccccccc
Q 002432          835 GSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNG-GQVHLIKKLELICLNDL  895 (922)
Q Consensus       835 ~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~-~~~~sL~~L~i~~c~~L  895 (922)
                      ++|++|++++|.+..++...+..+++|++|++++|.+..+++.. ..+++|+.|++++++--
T Consensus       470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence            89999999999999886666688999999999999999887654 45899999999887643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.2e-32  Score=318.84  Aligned_cols=494  Identities=15%  Similarity=0.146  Sum_probs=285.5

Q ss_pred             CCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCCCCCC--ccccCCCCcCC
Q 002432          228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLE  304 (922)
Q Consensus       228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~  304 (922)
                      |+...+.+.+++...   .+|..+   .++|++|++++|.++.+ |..++++++|++|++++|.+..  |..|+++++|+
T Consensus         4 C~~~~~c~~~~~~l~---~ip~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   77 (549)
T 2z81_A            4 CDASGVCDGRSRSFT---SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE   77 (549)
T ss_dssp             ECTTSEEECTTSCCS---SCCSCC---CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCceEECCCCccc---cccccC---CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCC
Confidence            344455677777665   788765   37899999999999976 5789999999999999999987  47899999999


Q ss_pred             EEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCc--cCcchhCCCCCCCEEEccCCcccccccccCCcccccccCccc
Q 002432          305 ILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKV--IAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDE  381 (922)
Q Consensus       305 ~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~--~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~  381 (922)
                      +|++++|+++.+|.. ++++++|++|++++|. +..  +|.. ++++++|++|++++|....  .          .....
T Consensus        78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~~l~~L~~L~L~~n~~~~--~----------~~~~~  143 (549)
T 2z81_A           78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSL-FPNLTNLQTLRIGNVETFS--E----------IRRID  143 (549)
T ss_dssp             EEECTTSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCS-CTTCTTCCEEEEEESSSCC--E----------ECTTT
T ss_pred             EEECCCCccCccCHHHhccCCCCcEEECCCCc-ccccchhhh-hhccCCccEEECCCCcccc--c----------cCHhh
Confidence            999999999988765 9999999999999986 664  3444 8999999999999987432  1          12357


Q ss_pred             CCCCCCCCEEEeeecCCCC-CCccccccccceeEEEEccCCCCCCccccccccccccccccccccccceeeEecccccch
Q 002432          382 LMPLPRLTTLEIAVENDNA-LPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTI  460 (922)
Q Consensus       382 l~~l~~L~~L~l~~~~~~~-~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~  460 (922)
                      ++.+++|++|++++|.... .|..                                                        
T Consensus       144 ~~~l~~L~~L~L~~n~l~~~~~~~--------------------------------------------------------  167 (549)
T 2z81_A          144 FAGLTSLNELEIKALSLRNYQSQS--------------------------------------------------------  167 (549)
T ss_dssp             TTTCCEEEEEEEEETTCCEECTTT--------------------------------------------------------
T ss_pred             hhcccccCeeeccCCcccccChhh--------------------------------------------------------
Confidence            8889999999999887543 2222                                                        


Q ss_pred             hhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCcccccCcccccccccccccccccccc
Q 002432          461 CLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRI  540 (922)
Q Consensus       461 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  540 (922)
                          ...+++|+.|++.++... ..+..+ .+.+++|++|+++++.......  ........                  
T Consensus       168 ----l~~l~~L~~L~l~~n~~~-~~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~------------------  221 (549)
T 2z81_A          168 ----LKSIRDIHHLTLHLSESA-FLLEIF-ADILSSVRYLELRDTNLARFQF--SPLPVDEV------------------  221 (549)
T ss_dssp             ----TTTCSEEEEEEEECSBST-THHHHH-HHSTTTBSEEEEESCBCTTCCC--CCCSSCCC------------------
T ss_pred             ----hhccccCceEecccCccc-ccchhh-HhhcccccEEEccCCccccccc--cccchhhh------------------
Confidence                112234445554443221 111111 1346777777777663211000  00000112                  


Q ss_pred             cccccccccccCcCeeEEecCCCcccccc---ccccccCCCccEEEEcccccchhhhccCCCCCCccCCcccccccccCc
Q 002432          541 CVDRLSTESFSELRTMKVENCDELSNIFV---LSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQ  617 (922)
Q Consensus       541 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  617 (922)
                               +++|+.|++.++. +....+   ...+..+++|+.+++++|... .+....        .........+++
T Consensus       222 ---------~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~-~~~~~~--------~~~~~~~~~l~~  282 (549)
T 2z81_A          222 ---------SSPMKKLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDCTLN-GLGDFN--------PSESDVVSELGK  282 (549)
T ss_dssp             ---------CCCCCEEEEESCE-EEHHHHHHHHGGGGGCTTCCEEEEESCEEE-CCSCCC--------CCTTTCCCCCTT
T ss_pred             ---------hhcccceeccccc-cchhHHHHHHHHhhhhcccccccccccccc-cccccc--------ccchhhhhhhcc
Confidence                     3344444444431 111100   011233445555555554311 110000        000001123344


Q ss_pred             ccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCcccccCccEEEeccCcCcccccc-
Q 002432          618 IRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFY-  696 (922)
Q Consensus       618 L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~-  696 (922)
                      |+.|.+.++.--.....        ..+.......++|+.|++++|.++.++... ...+++|++|++++|.--...+. 
T Consensus       283 L~~L~l~~~~i~~~~~~--------~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~-~~~l~~L~~L~Ls~N~l~~~~~~~  353 (549)
T 2z81_A          283 VETVTIRRLHIPQFYLF--------YDLSTVYSLLEKVKRITVENSKVFLVPCSF-SQHLKSLEFLDLSENLMVEEYLKN  353 (549)
T ss_dssp             CCEEEEESCBCSCGGGS--------CCCCHHHHHSTTCCEEEEESSCCCCCCHHH-HHHCTTCCEEECCSSCCCHHHHHH
T ss_pred             cccccccccccchhhhc--------ccchhhhhhcccceEEEeccCccccCCHHH-HhcCccccEEEccCCccccccccc
Confidence            44444443321000000        000001123456777777777666553221 12457777777777542222211 


Q ss_pred             HHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCcc
Q 002432          697 ASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLN  776 (922)
Q Consensus       697 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~  776 (922)
                      ...+..+++|++|++++| .++.+....     .....+++|++|++++| .++.+|....  .+++|++|++++| +++
T Consensus       354 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~lp~~~~--~~~~L~~L~Ls~N-~l~  423 (549)
T 2z81_A          354 SACKGAWPSLQTLVLSQN-HLRSMQKTG-----EILLTLKNLTSLDISRN-TFHPMPDSCQ--WPEKMRFLNLSST-GIR  423 (549)
T ss_dssp             HTCTTSSTTCCEEECTTS-CCCCHHHHH-----HHGGGCTTCCEEECTTC-CCCCCCSCCC--CCTTCCEEECTTS-CCS
T ss_pred             hhhhhccccCcEEEccCC-cccccccch-----hhhhcCCCCCEEECCCC-CCccCChhhc--ccccccEEECCCC-Ccc
Confidence            112456677777777775 444332100     01223667777777776 4556665544  5677777777775 455


Q ss_pred             ccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHh
Q 002432          777 TFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLE  856 (922)
Q Consensus       777 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~  856 (922)
                      .++...                        .++|++|++++|++..+.       ..+++|++|++++|.+..+|..  .
T Consensus       424 ~l~~~~------------------------~~~L~~L~Ls~N~l~~~~-------~~l~~L~~L~Ls~N~l~~ip~~--~  470 (549)
T 2z81_A          424 VVKTCI------------------------PQTLEVLDVSNNNLDSFS-------LFLPRLQELYISRNKLKTLPDA--S  470 (549)
T ss_dssp             CCCTTS------------------------CTTCSEEECCSSCCSCCC-------CCCTTCCEEECCSSCCSSCCCG--G
T ss_pred             cccchh------------------------cCCceEEECCCCChhhhc-------ccCChhcEEECCCCccCcCCCc--c
Confidence            554321                        357777777777665432       2455777777777777777753  3


Q ss_pred             hcCCCCeEEEecccceEEecCC-ccccccceEecccccc
Q 002432          857 KFHGLENLNLSFCSYKELFSNG-GQVHLIKKLELICLND  894 (922)
Q Consensus       857 ~l~~L~~L~l~~c~l~~l~~~~-~~~~sL~~L~i~~c~~  894 (922)
                      .+++|+.|++++|.+..+++.. ..+++|+.|++++|+-
T Consensus       471 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred             cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence            5777777777777777765542 4467777777776664

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7.5e-32  Score=320.92  Aligned_cols=523  Identities=17%  Similarity=0.177  Sum_probs=261.2

Q ss_pred             EeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEccCCCC
Q 002432          213 SWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYSTL  291 (922)
Q Consensus       213 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l  291 (922)
                      +-++..+..+|..+. +++++|++++|.+.   .++...|.++++||+|+|++|.|+.+|+ +|++|++|++|+|++|++
T Consensus        37 ~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~---~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           37 QCMELNFYKIPDNLP-FSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             ECTTSCCSSCCSSSC-TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             ECCCCCcCccCCCCC-cCCCEEEeeCCCCC---CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence            333334555665331 36777777777665   5666666777777777777777777644 577777777777777777


Q ss_pred             CC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCcc--CcchhCCCCCCCEEEccCCccccccc
Q 002432          292 GD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVI--APNVIASFTRLEELYMSNCFVEWKVE  366 (922)
Q Consensus       292 ~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~--p~~~l~~L~~L~~L~L~~~~~~~~~~  366 (922)
                      +. | ..|.++++|++|++++|+++.+|.. |+++++|++|++++|. +..+  |.. ++++++|++|++++|.+..   
T Consensus       113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~---  187 (635)
T 4g8a_A          113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS---  187 (635)
T ss_dssp             CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCE---
T ss_pred             CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCccccc---
Confidence            76 4 5577777777777777777777653 6777777777777765 4433  333 6777777777777776653   


Q ss_pred             ccCCcccccccCcccCCCCCC----CCEEEeeecCCCCCCccccccccceeEEEEccCCCCCCccccccccccccccccc
Q 002432          367 DEGSSSKKSKASLDELMPLPR----LTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLI  442 (922)
Q Consensus       367 ~~~~~~~~~~~~~~~l~~l~~----L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  442 (922)
                                ..+..+..+.+    ...++++.+....++... ...+                                
T Consensus       188 ----------~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~-~~~~--------------------------------  224 (635)
T 4g8a_A          188 ----------IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEI--------------------------------  224 (635)
T ss_dssp             ----------ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT-TTTC--------------------------------
T ss_pred             ----------cccccccchhhhhhhhhhhhcccCcccccCccc-ccch--------------------------------
Confidence                      11222322222    224555555444333221 0000                                


Q ss_pred             cccccceeeEecccccchh--hhcccCCcceeEEeec--cccCcccccc--ccccccccCCcEEEEecCCCceEeecCcc
Q 002432          443 LDHQSLRMLKLKLNWKTIC--LRKLQGIRKVEYLCLD--KFQGVKNILF--ELDTQGFSQLKHLLVQNNPDLLFIVDSRE  516 (922)
Q Consensus       443 ~~~~~l~~l~l~~~~~~~~--~~~~~~~~~L~~L~l~--~~~~~~~~~~--~l~~~~l~~L~~L~l~~~~~l~~i~~~~~  516 (922)
                          ....+.+..+.....  .....+++.++...+.  ..........  ......+..+....+.........     
T Consensus       225 ----~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----  295 (635)
T 4g8a_A          225 ----RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL-----  295 (635)
T ss_dssp             ----EEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCE-----
T ss_pred             ----hhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-----
Confidence                111111111100000  0001122222222221  1111000000  000011222222222221110000     


Q ss_pred             cccCcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhcc
Q 002432          517 IVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAI  596 (922)
Q Consensus       517 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  596 (922)
                                              .........+.+++.+.+.++. +..+.   .+....+|+.|++.+|. +..+.. 
T Consensus       296 ------------------------~~~~~~~~~~~~l~~l~~~~~~-~~~~~---~~~~~~~L~~L~l~~~~-~~~~~~-  345 (635)
T 4g8a_A          296 ------------------------DGIIDLFNCLTNVSSFSLVSVT-IERVK---DFSYNFGWQHLELVNCK-FGQFPT-  345 (635)
T ss_dssp             ------------------------EECTTTTGGGTTCSEEEEESCE-EEECG---GGGSCCCCSEEEEESCE-ESSCCC-
T ss_pred             ------------------------cchhhhhhhhcccccccccccc-ccccc---ccccchhhhhhhccccc-ccCcCc-
Confidence                                    0000112234455555555442 11111   12334455666665543 211111 


Q ss_pred             CCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCC-cc
Q 002432          597 GGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQT-PC  675 (922)
Q Consensus       597 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~-~~  675 (922)
                                      ..++.|+.+.+.+...-..               .....+++|+.|++++|.+........ ..
T Consensus       346 ----------------~~l~~L~~l~l~~n~~~~~---------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~  394 (635)
T 4g8a_A          346 ----------------LKLKSLKRLTFTSNKGGNA---------------FSEVDLPSLEFLDLSRNGLSFKGCCSQSDF  394 (635)
T ss_dssp             ----------------CBCTTCCEEEEESCCSCCB---------------CCCCBCTTCCEEECCSSCCBEEEECCHHHH
T ss_pred             ----------------ccchhhhhcccccccCCCC---------------cccccccccccchhhccccccccccccchh
Confidence                            1234444444433321111               011235666667666664433221111 12


Q ss_pred             cccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCC
Q 002432          676 CFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPG  755 (922)
Q Consensus       676 ~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~  755 (922)
                      .+.+|+.|++..+... .++  ..+..+++|+.+++.++.......       ...+..+++++.++++++..-...+..
T Consensus       395 ~~~~L~~L~~~~~~~~-~~~--~~~~~l~~L~~l~l~~~~~~~~~~-------~~~~~~l~~l~~l~ls~n~l~~~~~~~  464 (635)
T 4g8a_A          395 GTISLKYLDLSFNGVI-TMS--SNFLGLEQLEHLDFQHSNLKQMSE-------FSVFLSLRNLIYLDISHTHTRVAFNGI  464 (635)
T ss_dssp             SCSCCCEEECCSCSEE-EEC--SCCTTCTTCCEEECTTSEEESTTS-------SCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred             hhhhhhhhhccccccc-ccc--ccccccccccchhhhhcccccccc-------ccccccccccccccccccccccccccc
Confidence            3456667766664322 222  124556667777666653222211       111223566666666665433322323


Q ss_pred             cCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCC
Q 002432          756 LHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFG  835 (922)
Q Consensus       756 ~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  835 (922)
                      ..  .+++|+.|++++|.....+...                     .+..+++|++|++++|++..+.+..|.   .++
T Consensus       465 ~~--~~~~L~~L~Ls~N~~~~~~~~~---------------------~~~~l~~L~~L~Ls~N~L~~l~~~~f~---~l~  518 (635)
T 4g8a_A          465 FN--GLSSLEVLKMAGNSFQENFLPD---------------------IFTELRNLTFLDLSQCQLEQLSPTAFN---SLS  518 (635)
T ss_dssp             TT--TCTTCCEEECTTCEEGGGEECS---------------------CCTTCTTCCEEECTTSCCCEECTTTTT---TCT
T ss_pred             cc--cchhhhhhhhhhcccccccCch---------------------hhhhccccCEEECCCCccCCcChHHHc---CCC
Confidence            22  5667777777766544443222                     235567777777777777766666544   667


Q ss_pred             CccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCc--cccccceEeccccc
Q 002432          836 SLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGG--QVHLIKKLELICLN  893 (922)
Q Consensus       836 sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~--~~~sL~~L~i~~c~  893 (922)
                      +|++|+|++|.+..+|...++++++|+.|++++|.+..+++...  .+++|+.|+++++|
T Consensus       519 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          519 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            77777777777777776666777777777777777777665441  23677777776543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.98  E-value=1.1e-31  Score=315.97  Aligned_cols=186  Identities=12%  Similarity=0.085  Sum_probs=112.3

Q ss_pred             cCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcC
Q 002432          678 QRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLH  757 (922)
Q Consensus       678 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~  757 (922)
                      ++|++|++++| .++.++ ...+..+++|++|++++| .+..++.............+++|+.|++++|. ++.++....
T Consensus       433 ~~L~~L~Ls~N-~l~~lp-~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~  508 (636)
T 4eco_A          433 INVSSINLSNN-QISKFP-KELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFR  508 (636)
T ss_dssp             CCEEEEECCSS-CCCSCC-THHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGS
T ss_pred             CCCCEEECcCC-ccCcCC-HHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhh
Confidence            45555555553 344443 234455666666666664 34444221111100001123477777777763 445654432


Q ss_pred             cCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeech------hhhhhhcCCCCCCC
Q 002432          758 TSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSI------KDIMMLLQGDFPQD  831 (922)
Q Consensus       758 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~------~~~~~~~~~~~~~~  831 (922)
                      ...+++|++|++++| +++.+|...                      ..+++|++|++++      |++....|..   +
T Consensus       509 ~~~l~~L~~L~Ls~N-~l~~ip~~~----------------------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~---l  562 (636)
T 4eco_A          509 ATTLPYLVGIDLSYN-SFSKFPTQP----------------------LNSSTLKGFGIRNQRDAQGNRTLREWPEG---I  562 (636)
T ss_dssp             TTTCTTCCEEECCSS-CCSSCCCGG----------------------GGCSSCCEEECCSCBCTTCCBCCCCCCTT---G
T ss_pred             hccCCCcCEEECCCC-CCCCcChhh----------------------hcCCCCCEEECCCCcccccCcccccChHH---H
Confidence            236788888888875 565566542                      5688888888854      5555555555   3


Q ss_pred             CCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCcc---------ccccceEecccccccc
Q 002432          832 HLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQ---------VHLIKKLELICLNDLE  896 (922)
Q Consensus       832 ~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~---------~~sL~~L~i~~c~~L~  896 (922)
                      ..+++|++|+|++|.+..+|..+.   ++|+.|++++|++..+......         +...+..+|.+|+.|.
T Consensus       563 ~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~  633 (636)
T 4eco_A          563 TLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD  633 (636)
T ss_dssp             GGCSSCCEEECCSSCCCBCCSCCC---TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred             hcCCCCCEEECCCCcCCccCHhHh---CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence            467899999999999999997753   8999999999988887543321         2223445777887764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.98  E-value=1.3e-30  Score=310.20  Aligned_cols=524  Identities=18%  Similarity=0.150  Sum_probs=323.5

Q ss_pred             ecCCCCCCCCCccccCcceEEEeecCCCCCCCCC--CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc
Q 002432          192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPEG--LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF  269 (922)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~  269 (922)
                      ..+.++..+|. +.+..+++|++++|.+..+++.  .++++|++|++++|.+.   .+++..|.++++|++|+|++|+++
T Consensus        38 c~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~---~i~~~~f~~L~~L~~L~Ls~N~l~  113 (635)
T 4g8a_A           38 CMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQ  113 (635)
T ss_dssp             CTTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCC
T ss_pred             CCCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC---CcChhHhcCCCCCCEEEccCCcCC
Confidence            34456666765 5678999999999999999864  39999999999999876   788888899999999999999999


Q ss_pred             cCch-hhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCCCcc--cchhhcCCCCCCEEeccCCCCCCccCcch
Q 002432          270 SLPS-SIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIVE--FPEELGKLTKLRLLDLTNCFHLKVIAPNV  344 (922)
Q Consensus       270 ~lp~-~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~  344 (922)
                      .+|. .|+++++|++|++++|.++. + ..|+++++|++|++++|.++.  +|..++++++|++|++++|. +..++...
T Consensus       114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~  192 (635)
T 4g8a_A          114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTD  192 (635)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGG
T ss_pred             CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccccccc
Confidence            9875 68999999999999999998 4 579999999999999999874  57889999999999999986 88877665


Q ss_pred             hCCCCCCC----EEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCC-CCcc-c-cccccceeEEEE
Q 002432          345 IASFTRLE----ELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNA-LPEG-F-FVRELERFKILI  417 (922)
Q Consensus       345 l~~L~~L~----~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~-~-~~~~L~~l~~~~  417 (922)
                      +..+.+++    .++++.|.+..              ..........++.+++..+.... +... + .+..++......
T Consensus       193 l~~L~~l~~~~~~~~ls~n~l~~--------------i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~  258 (635)
T 4g8a_A          193 LRVLHQMPLLNLSLDLSLNPMNF--------------IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL  258 (635)
T ss_dssp             GHHHHTCTTCCCEEECTTCCCCE--------------ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred             ccchhhhhhhhhhhhcccCcccc--------------cCcccccchhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence            76655544    67788777653              12223333355667776653210 0010 1 223333332222


Q ss_pred             ccCCCCCCccccccccccccccccccccccceeeEecccccchhhhcccCCcceeEEeeccccC---ccccccccccccc
Q 002432          418 GDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQG---VKNILFELDTQGF  494 (922)
Q Consensus       418 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~l~~~~l  494 (922)
                      +......                      .+....       ..  .......+....+.....   .......  ...+
T Consensus       259 ~~~~~~~----------------------~l~~~~-------~~--~~~~~~~l~~~~l~~~~~~~~~~~~~~~--~~~~  305 (635)
T 4g8a_A          259 GEFRNEG----------------------NLEKFD-------KS--ALEGLCNLTIEEFRLAYLDYYLDGIIDL--FNCL  305 (635)
T ss_dssp             ECCTTSC----------------------CCSCCC-------TT--TTGGGGGSEEEEEEEECCCSCEEECTTT--TGGG
T ss_pred             ccccccc----------------------cccccc-------cc--ccccccchhhhhhhhhhhcccccchhhh--hhhh
Confidence            2110000                      000000       00  011112233332222111   1111111  1356


Q ss_pred             cCCcEEEEecCCCceEeecCcccccCcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccc
Q 002432          495 SQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTK  574 (922)
Q Consensus       495 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  574 (922)
                      .+++.+.+.++... .+      ........|+.|.+.++.. ..     .....++.|+.+.+..+.. ...+   ...
T Consensus       306 ~~l~~l~~~~~~~~-~~------~~~~~~~~L~~L~l~~~~~-~~-----~~~~~l~~L~~l~l~~n~~-~~~~---~~~  368 (635)
T 4g8a_A          306 TNVSSFSLVSVTIE-RV------KDFSYNFGWQHLELVNCKF-GQ-----FPTLKLKSLKRLTFTSNKG-GNAF---SEV  368 (635)
T ss_dssp             TTCSEEEEESCEEE-EC------GGGGSCCCCSEEEEESCEE-SS-----CCCCBCTTCCEEEEESCCS-CCBC---CCC
T ss_pred             cccccccccccccc-cc------cccccchhhhhhhcccccc-cC-----cCcccchhhhhcccccccC-CCCc---ccc
Confidence            67788877766321 11      1123344566666665532 11     1123455666666665532 1111   123


Q ss_pred             cCCCccEEEEcccccchhhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCC
Q 002432          575 CLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPN  654 (922)
Q Consensus       575 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~  654 (922)
                      .+++|+.++++++... ....                                                 .........+
T Consensus       369 ~l~~L~~L~ls~n~l~-~~~~-------------------------------------------------~~~~~~~~~~  398 (635)
T 4g8a_A          369 DLPSLEFLDLSRNGLS-FKGC-------------------------------------------------CSQSDFGTIS  398 (635)
T ss_dssp             BCTTCCEEECCSSCCB-EEEE-------------------------------------------------CCHHHHSCSC
T ss_pred             cccccccchhhccccc-cccc-------------------------------------------------cccchhhhhh
Confidence            4566666666554311 1000                                                 0011123456


Q ss_pred             cceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCccc
Q 002432          655 LEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFA  734 (922)
Q Consensus       655 L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~  734 (922)
                      |+.+++..+....+....  ..+++|+.+++.+++..... +...+..+++++.++++++ .+..+..       .....
T Consensus       399 L~~L~~~~~~~~~~~~~~--~~l~~L~~l~l~~~~~~~~~-~~~~~~~l~~l~~l~ls~n-~l~~~~~-------~~~~~  467 (635)
T 4g8a_A          399 LKYLDLSFNGVITMSSNF--LGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHT-HTRVAFN-------GIFNG  467 (635)
T ss_dssp             CCEEECCSCSEEEECSCC--TTCTTCCEEECTTSEEESTT-SSCTTTTCTTCCEEECTTS-CCEECCT-------TTTTT
T ss_pred             hhhhhccccccccccccc--cccccccchhhhhccccccc-ccccccccccccccccccc-ccccccc-------ccccc
Confidence            667777666555443322  24677777777775544332 3344667777777777765 3433321       11223


Q ss_pred             ccccceeecccCCCccccC-CCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceE
Q 002432          735 FRRVTNISLCHLPELTCLY-PGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEEL  813 (922)
Q Consensus       735 l~~L~~L~l~~c~~l~~l~-~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  813 (922)
                      +++|+.|+++++.....+. ..+.  .+++|++|++++| +++.++..                     .+.++++|++|
T Consensus       468 ~~~L~~L~Ls~N~~~~~~~~~~~~--~l~~L~~L~Ls~N-~L~~l~~~---------------------~f~~l~~L~~L  523 (635)
T 4g8a_A          468 LSSLEVLKMAGNSFQENFLPDIFT--ELRNLTFLDLSQC-QLEQLSPT---------------------AFNSLSSLQVL  523 (635)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCT--TCTTCCEEECTTS-CCCEECTT---------------------TTTTCTTCCEE
T ss_pred             chhhhhhhhhhcccccccCchhhh--hccccCEEECCCC-ccCCcChH---------------------HHcCCCCCCEE
Confidence            6778888888776555443 3333  7888888888886 67666543                     23668888888


Q ss_pred             eechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhc-CCCCeEEEecccce
Q 002432          814 GLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKF-HGLENLNLSFCSYK  872 (922)
Q Consensus       814 ~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l-~~L~~L~l~~c~l~  872 (922)
                      +|++|++..+.+..|.   .+++|++|+|++|.+..++.+.++.+ ++|+.|++++|++.
T Consensus       524 ~Ls~N~l~~l~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          524 NMSHNNFFSLDTFPYK---CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             ECTTSCCCBCCCGGGT---TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             ECCCCcCCCCChhHHh---CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            8888888776665543   67888899998888888877766776 68999999887653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=6.4e-31  Score=313.52  Aligned_cols=167  Identities=14%  Similarity=0.099  Sum_probs=100.1

Q ss_pred             cCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcC
Q 002432          678 QRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLH  757 (922)
Q Consensus       678 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~  757 (922)
                      ++|+.|++++| .+..+| ...+..+++|+.|++++| .+..++............++++|+.|+|++| .++.++....
T Consensus       673 ~~L~~L~Ls~N-~L~~lp-~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~  748 (876)
T 4ecn_A          673 INASTVTLSYN-EIQKFP-TELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFR  748 (876)
T ss_dssp             CCEEEEECCSS-CCCSCC-HHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGS
T ss_pred             CCcCEEEccCC-cCCccC-HHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhh
Confidence            35556666553 344442 334456666666666664 4444432211111011223446777777776 4445554432


Q ss_pred             cCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeech------hhhhhhcCCCCCCC
Q 002432          758 TSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSI------KDIMMLLQGDFPQD  831 (922)
Q Consensus       758 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~------~~~~~~~~~~~~~~  831 (922)
                      ...+++|+.|++++| ++..+|...                      ..+++|+.|++++      |++....|..   +
T Consensus       749 ~~~l~~L~~L~Ls~N-~L~~lp~~l----------------------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~---l  802 (876)
T 4ecn_A          749 ATTLPYLSNMDVSYN-CFSSFPTQP----------------------LNSSQLKAFGIRHQRDAEGNRILRQWPTG---I  802 (876)
T ss_dssp             TTTCTTCCEEECCSS-CCSSCCCGG----------------------GGCTTCCEEECCCCBCTTCCBCCCCCCTT---G
T ss_pred             hccCCCcCEEEeCCC-CCCccchhh----------------------hcCCCCCEEECCCCCCcccccccccChHH---H
Confidence            225778888888775 555565432                      5677888888866      4454444544   3


Q ss_pred             CCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecC
Q 002432          832 HLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSN  877 (922)
Q Consensus       832 ~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~  877 (922)
                      ..+++|+.|+|++|.+..+|..+.   ++|+.|++++|++..+.+.
T Consensus       803 ~~L~~L~~L~Ls~N~L~~Ip~~l~---~~L~~LdLs~N~l~~i~~~  845 (876)
T 4ecn_A          803 TTCPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNPNISIDVT  845 (876)
T ss_dssp             GGCSSCCEEECCSSCCCBCCSCCC---SSSCEEECCSCTTCEEECG
T ss_pred             hcCCCCCEEECCCCCCCccCHhhc---CCCCEEECCCCCCCccChH
Confidence            367788888888888888887643   6888888888888777553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=3.6e-31  Score=306.09  Aligned_cols=120  Identities=20%  Similarity=0.264  Sum_probs=65.2

Q ss_pred             EEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEee
Q 002432          233 LLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLI  309 (922)
Q Consensus       233 ~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~  309 (922)
                      +|++++|...   .+|..++   ++|++|++++|.+..++ ..+.++++|++|++++|.+..  |..|+++++|++|+++
T Consensus         4 ~l~ls~n~l~---~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   77 (520)
T 2z7x_B            4 LVDRSKNGLI---HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS   77 (520)
T ss_dssp             EEECTTSCCS---SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred             eEecCCCCcc---ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence            4444444443   3444331   45555555555555543 355555566666666555554  3555566666666666


Q ss_pred             cCCCcccchhhcCCCCCCEEeccCCCCCCc--cCcchhCCCCCCCEEEccCCccc
Q 002432          310 ESDIVEFPEELGKLTKLRLLDLTNCFHLKV--IAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       310 ~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~--~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      +|+++.+|..  .+++|++|++++|. +..  +|.. ++++++|++|++++|.+.
T Consensus        78 ~N~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~-~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           78 HNKLVKISCH--PTVNLKHLDLSFNA-FDALPICKE-FGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             SSCCCEEECC--CCCCCSEEECCSSC-CSSCCCCGG-GGGCTTCCEEEEEESSCC
T ss_pred             CCceeecCcc--ccCCccEEeccCCc-cccccchhh-hccCCcceEEEecCcccc
Confidence            6655555544  55666666666654 433  2333 566666666666655544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=6.9e-30  Score=295.34  Aligned_cols=123  Identities=19%  Similarity=0.176  Sum_probs=109.1

Q ss_pred             cEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCC
Q 002432          259 KVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCF  335 (922)
Q Consensus       259 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~  335 (922)
                      ++||+++|.++.+|..+.  ++|++|++++|.+..  |..|.++++|++|++++|+++.+ |..|+++++|++|++++|.
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            689999999999998887  899999999999988  47899999999999999999977 6789999999999999986


Q ss_pred             CCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432          336 HLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN  399 (922)
Q Consensus       336 ~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  399 (922)
                       ++.+|..   .+++|++|++++|.+..            ...+..++++++|++|++++|...
T Consensus        81 -l~~lp~~---~l~~L~~L~L~~N~l~~------------~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           81 -LVKISCH---PTVNLKHLDLSFNAFDA------------LPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             -CCEEECC---CCCCCSEEECCSSCCSS------------CCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             -eeecCcc---ccCCccEEeccCCcccc------------ccchhhhccCCcceEEEecCcccc
Confidence             8889874   89999999999998863            123578899999999999988754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=1.8e-28  Score=285.74  Aligned_cols=146  Identities=18%  Similarity=0.219  Sum_probs=98.5

Q ss_pred             CccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEE
Q 002432          230 QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEIL  306 (922)
Q Consensus       230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L  306 (922)
                      ..++++++++...   .+|..+   .++|++|++++|.+..+| ..++++++|++|++++|.++.  |..|.++++|++|
T Consensus        32 ~~~~l~ls~~~L~---~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           32 LESMVDYSNRNLT---HVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             -CCEEECTTSCCC---SCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCcEEEcCCCCCc---cCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            3466666666554   566544   267777777777777665 467777777777777777776  4667777778888


Q ss_pred             EeecCCCcccchhhcCCCCCCEEeccCCCCCCccCc-chhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCC
Q 002432          307 SLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAP-NVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPL  385 (922)
Q Consensus       307 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  385 (922)
                      ++++|+++.+|..  .+++|++|++++|. +..++. ..++++++|++|++++|.+..             ..+..+.++
T Consensus       106 ~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~-------------~~~~~l~~L  169 (562)
T 3a79_B          106 DVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ-------------LDLLPVAHL  169 (562)
T ss_dssp             ECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT-------------TTTGGGTTS
T ss_pred             ECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc-------------Cchhhhhhc
Confidence            8877777777765  77778888887775 666542 337778888888887776653             222333333


Q ss_pred             CCCCEEEeeecCC
Q 002432          386 PRLTTLEIAVEND  398 (922)
Q Consensus       386 ~~L~~L~l~~~~~  398 (922)
                       +|+.|++++|..
T Consensus       170 -~L~~L~L~~n~l  181 (562)
T 3a79_B          170 -HLSCILLDLVSY  181 (562)
T ss_dssp             -CEEEEEEEESSC
T ss_pred             -eeeEEEeecccc
Confidence             347888877765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=4.8e-29  Score=290.61  Aligned_cols=144  Identities=21%  Similarity=0.266  Sum_probs=125.0

Q ss_pred             cceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEc
Q 002432          208 KCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCL  286 (922)
Q Consensus       208 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L  286 (922)
                      ..++++++++.+..+|.... ++|++|++++|.+.   .++...|.++++|++|++++|.++.+ |..|+++++|++|++
T Consensus        32 ~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           32 LESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSIS---ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             -CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCC---CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCcc---ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            34899999999999997653 89999999999876   67777779999999999999999987 678999999999999


Q ss_pred             cCCCCCC-ccccCCCCcCCEEEeecCCCcccc--hhhcCCCCCCEEeccCCCCCCccCcchhCCCCCC--CEEEccCCcc
Q 002432          287 DYSTLGD-ITIIGKLKNLEILSLIESDIVEFP--EELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRL--EELYMSNCFV  361 (922)
Q Consensus       287 ~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L--~~L~L~~~~~  361 (922)
                      ++|.++. |..  .+++|++|++++|+++.+|  ..++++++|++|++++|. +....   ++.+++|  ++|++++|.+
T Consensus       108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred             CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence            9999998 655  8999999999999999764  789999999999999986 55532   5555565  9999999987

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=1e-28  Score=290.74  Aligned_cols=442  Identities=14%  Similarity=0.095  Sum_probs=271.0

Q ss_pred             CCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc-------------cCchhhhccCCCCEEEccCCCCCC--
Q 002432          229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-------------SLPSSIDLLVNLQTLCLDYSTLGD--  293 (922)
Q Consensus       229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-------------~lp~~i~~L~~L~~L~L~~~~l~~--  293 (922)
                      .+++.|+++++...  |.+|..+ +++++||+|+|++|.+.             .+|...  +.+|| ++++++.+..  
T Consensus        81 ~~V~~L~L~~~~l~--g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~  154 (636)
T 4eco_A           81 GRVTGLSLEGFGAS--GRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDP  154 (636)
T ss_dssp             CCEEEEECTTSCCE--EEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCG
T ss_pred             CCEEEEEecCcccC--CcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCc
Confidence            57889999988764  4788765 89999999999999652             344433  44556 6666655544  


Q ss_pred             ccccCC-------------------CCcCCEEEee--cCCCcccchhhcCCCCCCEEeccCCCCCCc-------------
Q 002432          294 ITIIGK-------------------LKNLEILSLI--ESDIVEFPEELGKLTKLRLLDLTNCFHLKV-------------  339 (922)
Q Consensus       294 p~~i~~-------------------L~~L~~L~L~--~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~-------------  339 (922)
                      |..+..                   ...++.+.+.  +|+++.+|..++++++|++|++++|. +..             
T Consensus       155 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~  233 (636)
T 4eco_A          155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSE  233 (636)
T ss_dssp             GGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSH
T ss_pred             hhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccc
Confidence            333331                   1122222222  45677789889999999999999986 666             


Q ss_pred             -----cCcchhC--CCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecC-CCC--CCccccccc
Q 002432          340 -----IAPNVIA--SFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEN-DNA--LPEGFFVRE  409 (922)
Q Consensus       340 -----~p~~~l~--~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~--~~~~~~~~~  409 (922)
                           +|.. ++  ++++|++|++++|.+.+             ..+..++++++|++|++++|. ...  +|..+    
T Consensus       234 ~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~-------------~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~----  295 (636)
T 4eco_A          234 YAQQYKTED-LKWDNLKDLTDVEVYNCPNLT-------------KLPTFLKALPEMQLINVACNRGISGEQLKDDW----  295 (636)
T ss_dssp             HHHHHTTSC-CCGGGCTTCCEEEEECCTTCS-------------SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHH----
T ss_pred             hhcccCchh-hhhcccCCCCEEEecCCcCCc-------------cChHHHhcCCCCCEEECcCCCCCccccchHHH----
Confidence                 8877 88  89999999999988775             566888899999999999887 541  33221    


Q ss_pred             cceeEEEEccCCCCCCccccccccccccccccccccccceeeEecccccchhhhcccCCcceeEEeeccccCcccccccc
Q 002432          410 LERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFEL  489 (922)
Q Consensus       410 L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  489 (922)
                                                                         ..        |.                 
T Consensus       296 ---------------------------------------------------~~--------L~-----------------  299 (636)
T 4eco_A          296 ---------------------------------------------------QA--------LA-----------------  299 (636)
T ss_dssp             ---------------------------------------------------HH--------HH-----------------
T ss_pred             ---------------------------------------------------Hh--------hh-----------------
Confidence                                                               00        00                 


Q ss_pred             ccccccCCcEEEEecCCCceEeecCcccccCcccccccccccccccccccccccccccccccCcCeeEEecCCCcc-ccc
Q 002432          490 DTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELS-NIF  568 (922)
Q Consensus       490 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~  568 (922)
                      ....+++|++|+++++... .++                             .. ...+.+++|+.|++.+| .+. .++
T Consensus       300 ~~~~l~~L~~L~L~~n~l~-~ip-----------------------------~~-~~l~~l~~L~~L~L~~N-~l~g~ip  347 (636)
T 4eco_A          300 DAPVGEKIQIIYIGYNNLK-TFP-----------------------------VE-TSLQKMKKLGMLECLYN-QLEGKLP  347 (636)
T ss_dssp             HSGGGGTCCEEECCSSCCS-SCC-----------------------------CH-HHHTTCTTCCEEECCSC-CCEEECC
T ss_pred             ccccCCCCCEEECCCCcCC-ccC-----------------------------ch-hhhccCCCCCEEeCcCC-cCccchh
Confidence            0012355555555554211 110                             00 00222334444444443 222 221


Q ss_pred             cccccccCCCccEEEEcccccchhhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccc
Q 002432          569 VLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNG  648 (922)
Q Consensus       569 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~  648 (922)
                         .+..+++|++|+++++. ++.++.                                                    .
T Consensus       348 ---~~~~l~~L~~L~L~~N~-l~~lp~----------------------------------------------------~  371 (636)
T 4eco_A          348 ---AFGSEIKLASLNLAYNQ-ITEIPA----------------------------------------------------N  371 (636)
T ss_dssp             ---CCEEEEEESEEECCSSE-EEECCT----------------------------------------------------T
T ss_pred             ---hhCCCCCCCEEECCCCc-cccccH----------------------------------------------------h
Confidence               23334445555554432 211110                                                    0


Q ss_pred             cccCCC-cceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHh-------hhccccEEEEecccccceE
Q 002432          649 KVVLPN-LEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIK-------SLEQLQHLEIRNCTGLQVI  720 (922)
Q Consensus       649 ~~~l~~-L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~-------~l~~L~~L~l~~c~~l~~l  720 (922)
                      +..+++ |+.|++++|.++.++.......+++|++|++++| .+....+ ..+.       .+++|++|++++| .+..+
T Consensus       372 l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~l  448 (636)
T 4eco_A          372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN-EIGSVDG-KNFDPLDPTPFKGINVSSINLSNN-QISKF  448 (636)
T ss_dssp             SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSS-CTTTTTT-CSSCTTCSSCCCCCCEEEEECCSS-CCCSC
T ss_pred             hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCC-cCCCcch-hhhcccccccccCCCCCEEECcCC-ccCcC
Confidence            112344 5555555554444432222222446777777775 3333211 1133       5679999999996 55554


Q ss_pred             ecccCCCCCCCcccccccceeecccCCCccccCCCcCc------CCCCCccEEEEecCCCcccccccccccccccccccc
Q 002432          721 ISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHT------SEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLH  794 (922)
Q Consensus       721 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~------~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~  794 (922)
                      +..       ....+++|++|++++|. ++.++.....      .++++|++|++++| +++.+|...            
T Consensus       449 p~~-------~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~------------  507 (636)
T 4eco_A          449 PKE-------LFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDF------------  507 (636)
T ss_dssp             CTH-------HHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGG------------
T ss_pred             CHH-------HHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCccChhh------------
Confidence            321       12237889999999975 4477765431      12238999999986 677776542            


Q ss_pred             CCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeec------CC-CcccchhHHhhcCCCCeEEEe
Q 002432          795 VPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRD------DD-SASVPIGLLEKFHGLENLNLS  867 (922)
Q Consensus       795 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~------~~-l~~lp~~~l~~l~~L~~L~l~  867 (922)
                              ....+++|++|++++|++..+ |..   ...+++|+.|++++      |. ...+|..+ ..+++|++|+++
T Consensus       508 --------~~~~l~~L~~L~Ls~N~l~~i-p~~---~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l-~~l~~L~~L~Ls  574 (636)
T 4eco_A          508 --------RATTLPYLVGIDLSYNSFSKF-PTQ---PLNSSTLKGFGIRNQRDAQGNRTLREWPEGI-TLCPSLTQLQIG  574 (636)
T ss_dssp             --------STTTCTTCCEEECCSSCCSSC-CCG---GGGCSSCCEEECCSCBCTTCCBCCCCCCTTG-GGCSSCCEEECC
T ss_pred             --------hhccCCCcCEEECCCCCCCCc-Chh---hhcCCCCCEEECCCCcccccCcccccChHHH-hcCCCCCEEECC
Confidence                    002689999999999998873 444   34788999999954      33 45677665 689999999999


Q ss_pred             cccceEEecCCccccccceEeccccccccccc
Q 002432          868 FCSYKELFSNGGQVHLIKKLELICLNDLEYLW  899 (922)
Q Consensus       868 ~c~l~~l~~~~~~~~sL~~L~i~~c~~L~~l~  899 (922)
                      +|.+..++...  .++|+.|++++|+- ..++
T Consensus       575 ~N~l~~ip~~~--~~~L~~L~Ls~N~l-~~~~  603 (636)
T 4eco_A          575 SNDIRKVNEKI--TPNISVLDIKDNPN-ISID  603 (636)
T ss_dssp             SSCCCBCCSCC--CTTCCEEECCSCTT-CEEE
T ss_pred             CCcCCccCHhH--hCcCCEEECcCCCC-cccc
Confidence            99997776553  48999999987754 4444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=6.2e-28  Score=287.86  Aligned_cols=141  Identities=15%  Similarity=0.175  Sum_probs=101.2

Q ss_pred             CChHHhhCCCCCcEEEeeCCcCcc------------------Cchhhh--ccCCCCEEEccCCCCCC--ccccCCCCcCC
Q 002432          247 IPQRFFTGMRELKVVDLTNMQLFS------------------LPSSID--LLVNLQTLCLDYSTLGD--ITIIGKLKNLE  304 (922)
Q Consensus       247 l~~~~~~~l~~Lr~L~L~~~~i~~------------------lp~~i~--~L~~L~~L~L~~~~l~~--p~~i~~L~~L~  304 (922)
                      +|..+ +++++|++|+|++|.++.                  +|+.++  ++++|++|+|++|.+..  |..|+++++|+
T Consensus       440 IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~  518 (876)
T 4ecn_A          440 ISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ  518 (876)
T ss_dssp             ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred             hhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence            66654 777788888888877776                  777766  78888888888777554  67777888888


Q ss_pred             EEEeecCC-Ccc--cchhhcCCC-------CCCEEeccCCCCCCccCc-chhCCCCCCCEEEccCCcccccccccCCccc
Q 002432          305 ILSLIESD-IVE--FPEELGKLT-------KLRLLDLTNCFHLKVIAP-NVIASFTRLEELYMSNCFVEWKVEDEGSSSK  373 (922)
Q Consensus       305 ~L~L~~~~-l~~--lp~~i~~L~-------~L~~L~l~~~~~l~~~p~-~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~  373 (922)
                      +|++++|+ ++.  +|..++++.       +|++|++++|. +..+|. +.++++++|++|++++|.+.           
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~-----------  586 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR-----------  586 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC-----------
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc-----------
Confidence            88888776 664  777666655       78888888775 667776 12777888888888777665           


Q ss_pred             ccccCcccCCCCCCCCEEEeeecCCCCCCcc
Q 002432          374 KSKASLDELMPLPRLTTLEIAVENDNALPEG  404 (922)
Q Consensus       374 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  404 (922)
                         ..+ .++.+++|+.|++++|....+|..
T Consensus       587 ---~lp-~~~~L~~L~~L~Ls~N~l~~lp~~  613 (876)
T 4ecn_A          587 ---HLE-AFGTNVKLTDLKLDYNQIEEIPED  613 (876)
T ss_dssp             ---BCC-CCCTTSEESEEECCSSCCSCCCTT
T ss_pred             ---cch-hhcCCCcceEEECcCCccccchHH
Confidence               233 677777788888877776555543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=3.6e-27  Score=264.83  Aligned_cols=409  Identities=19%  Similarity=0.148  Sum_probs=190.4

Q ss_pred             CCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc-cCchhhhccCCC-------------CEEEccCC
Q 002432          224 EGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-SLPSSIDLLVNL-------------QTLCLDYS  289 (922)
Q Consensus       224 ~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L-------------~~L~L~~~  289 (922)
                      ..++.+.||+|++++|...   .+|.++ +++++|++|++++|.+. .+|.+++++.+|             ++|++++|
T Consensus         6 ~~~~~~~L~~L~l~~n~l~---~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~   81 (454)
T 1jl5_A            6 RNVSNTFLQEPLRHSSNLT---EMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL   81 (454)
T ss_dssp             --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred             cccccccchhhhcccCchh---hCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence            3345567777777777653   677665 77888888888887776 577777776654             77777777


Q ss_pred             CCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccccccc
Q 002432          290 TLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDE  368 (922)
Q Consensus       290 ~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~  368 (922)
                      .++. |..   .++|++|++++|.++.+|..   +.+|++|++++|. +..+|..    .++|++|++++|.+.      
T Consensus        82 ~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~----~~~L~~L~L~~n~l~------  144 (454)
T 1jl5_A           82 GLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL----PPLLEYLGVSNNQLE------  144 (454)
T ss_dssp             CCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC----CTTCCEEECCSSCCS------
T ss_pred             ccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC----CCCCCEEECcCCCCC------
Confidence            7776 432   36777777777777777643   3677777777764 5555431    157777777777665      


Q ss_pred             CCcccccccCcccCCCCCCCCEEEeeecCCCCCCccccccccceeEEEEccCCCCCCccccccccccccccccccccccc
Q 002432          369 GSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSL  448 (922)
Q Consensus       369 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l  448 (922)
                              .. .+++++++|++|++++|....+|..                                            
T Consensus       145 --------~l-p~~~~l~~L~~L~l~~N~l~~lp~~--------------------------------------------  171 (454)
T 1jl5_A          145 --------KL-PELQNSSFLKIIDVDNNSLKKLPDL--------------------------------------------  171 (454)
T ss_dssp             --------SC-CCCTTCTTCCEEECCSSCCSCCCCC--------------------------------------------
T ss_pred             --------CC-cccCCCCCCCEEECCCCcCcccCCC--------------------------------------------
Confidence                    22 2477777777777776665444322                                            


Q ss_pred             eeeEecccccchhhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCcccccCcccccccc
Q 002432          449 RMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLEL  528 (922)
Q Consensus       449 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~  528 (922)
                                         .++|++|++.++.- ..++ .  .+.+++|++|+++++..                     
T Consensus       172 -------------------~~~L~~L~L~~n~l-~~l~-~--~~~l~~L~~L~l~~N~l---------------------  207 (454)
T 1jl5_A          172 -------------------PPSLEFIAAGNNQL-EELP-E--LQNLPFLTAIYADNNSL---------------------  207 (454)
T ss_dssp             -------------------CTTCCEEECCSSCC-SSCC-C--CTTCTTCCEEECCSSCC---------------------
T ss_pred             -------------------cccccEEECcCCcC-CcCc-c--ccCCCCCCEEECCCCcC---------------------
Confidence                               11333343433321 1111 1  13455555555554421                     


Q ss_pred             cccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccCCCCCCccCCcc
Q 002432          529 LSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNN  608 (922)
Q Consensus       529 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~  608 (922)
                               +.++.      ..++|+.|++.+| .++.++   .+..+++|++|+++++. ++.++.             
T Consensus       208 ---------~~l~~------~~~~L~~L~l~~n-~l~~lp---~~~~l~~L~~L~l~~N~-l~~l~~-------------  254 (454)
T 1jl5_A          208 ---------KKLPD------LPLSLESIVAGNN-ILEELP---ELQNLPFLTTIYADNNL-LKTLPD-------------  254 (454)
T ss_dssp             ---------SSCCC------CCTTCCEEECCSS-CCSSCC---CCTTCTTCCEEECCSSC-CSSCCS-------------
T ss_pred             ---------CcCCC------CcCcccEEECcCC-cCCccc---ccCCCCCCCEEECCCCc-CCcccc-------------
Confidence                     11110      1135666666665 344432   14456666666666642 222110             


Q ss_pred             cccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCcccccCccEEEeccC
Q 002432          609 AIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGC  688 (922)
Q Consensus       609 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C  688 (922)
                                                                .+++|+.|++++|.++.++.     .+++|++|++++|
T Consensus       255 ------------------------------------------~~~~L~~L~l~~N~l~~l~~-----~~~~L~~L~ls~N  287 (454)
T 1jl5_A          255 ------------------------------------------LPPSLEALNVRDNYLTDLPE-----LPQSLTFLDVSEN  287 (454)
T ss_dssp             ------------------------------------------CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSS
T ss_pred             ------------------------------------------cccccCEEECCCCcccccCc-----ccCcCCEEECcCC
Confidence                                                      12455666666665554321     2356677777664


Q ss_pred             cCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcCCCCCccEEE
Q 002432          689 QKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLE  768 (922)
Q Consensus       689 ~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~  768 (922)
                       .++.++.     ..++|++|++++| .+..++.           ..++|++|+++++ .++.++.     .+++|++|+
T Consensus       288 -~l~~l~~-----~~~~L~~L~l~~N-~l~~i~~-----------~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~  343 (454)
T 1jl5_A          288 -IFSGLSE-----LPPNLYYLNASSN-EIRSLCD-----------LPPSLEELNVSNN-KLIELPA-----LPPRLERLI  343 (454)
T ss_dssp             -CCSEESC-----CCTTCCEEECCSS-CCSEECC-----------CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEE
T ss_pred             -ccCcccC-----cCCcCCEEECcCC-cCCcccC-----------CcCcCCEEECCCC-ccccccc-----cCCcCCEEE
Confidence             3444321     1256777777765 4444320           0146788888775 3444543     367899999


Q ss_pred             EecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCc
Q 002432          769 VFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSA  848 (922)
Q Consensus       769 l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~  848 (922)
                      +++| +++.+|.                         .+++|++|++++|.+..+.  .     .+.++..|.. ++...
T Consensus       344 L~~N-~l~~lp~-------------------------~l~~L~~L~L~~N~l~~l~--~-----ip~~l~~L~~-n~~~~  389 (454)
T 1jl5_A          344 ASFN-HLAEVPE-------------------------LPQNLKQLHVEYNPLREFP--D-----IPESVEDLRM-NSHLA  389 (454)
T ss_dssp             CCSS-CCSCCCC-------------------------CCTTCCEEECCSSCCSSCC--C-----CCTTCCEEEC-CC---
T ss_pred             CCCC-ccccccc-------------------------hhhhccEEECCCCCCCcCC--C-----ChHHHHhhhh-ccccc
Confidence            9886 6666643                         2678999999998876531  1     1234554432 24445


Q ss_pred             ccchhHHhhcCCCCeEEEecccceEEecCCccccccceEeccccccc
Q 002432          849 SVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLNDL  895 (922)
Q Consensus       849 ~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~~sL~~L~i~~c~~L  895 (922)
                      .+|.    .+++|+.|++++|++.+++.   .|++|+.|.+.+|.--
T Consensus       390 ~i~~----~~~~L~~L~ls~N~l~~~~~---iP~sl~~L~~~~~~~~  429 (454)
T 1jl5_A          390 EVPE----LPQNLKQLHVETNPLREFPD---IPESVEDLRMNSERVV  429 (454)
T ss_dssp             -----------------------------------------------
T ss_pred             cccc----ccCcCCEEECCCCcCCcccc---chhhHhheeCcCcccC
Confidence            5553    35889999999998887532   2678899998776543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=1.5e-25  Score=254.33  Aligned_cols=168  Identities=23%  Similarity=0.245  Sum_probs=130.2

Q ss_pred             cCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEE
Q 002432          206 LKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLC  285 (922)
Q Consensus       206 ~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~  285 (922)
                      .+++++|++.++.+..++....+++|++|++++|...   .++.  |.++++|++|++++|.+..++. ++++++|++|+
T Consensus        45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~---~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~  118 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT---DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT  118 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred             hccccEEecCCCCCccCcchhhhcCCCEEECCCCccC---Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence            5678888988888888876557888888888888765   5554  5888888888888888888776 88888888888


Q ss_pred             ccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccc
Q 002432          286 LDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKV  365 (922)
Q Consensus       286 L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~  365 (922)
                      +++|.+.....+.++++|++|++++|.++.+| .++++++|++|+++++  +..++.  ++++++|++|++++|.+..  
T Consensus       119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~~--  191 (466)
T 1o6v_A          119 LFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVSD--  191 (466)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCCC--
T ss_pred             CCCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCCC--
Confidence            88888887434888888888888888888776 4888888888888642  455544  7888888888888887652  


Q ss_pred             cccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432          366 EDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN  399 (922)
Q Consensus       366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  399 (922)
                                   +..+..+++|+.|+++++...
T Consensus       192 -------------~~~l~~l~~L~~L~l~~n~l~  212 (466)
T 1o6v_A          192 -------------ISVLAKLTNLESLIATNNQIS  212 (466)
T ss_dssp             -------------CGGGGGCTTCSEEECCSSCCC
T ss_pred             -------------ChhhccCCCCCEEEecCCccc
Confidence                         244677788888888776644

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=1.6e-25  Score=254.16  Aligned_cols=147  Identities=24%  Similarity=0.358  Sum_probs=108.2

Q ss_pred             CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEE
Q 002432          227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEIL  306 (922)
Q Consensus       227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L  306 (922)
                      .+++++.|++.++...   .+|.  +..+++|++|++++|.+..+|. ++++++|++|++++|.+.....++++++|++|
T Consensus        44 ~l~~l~~L~l~~~~i~---~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L  117 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK---SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGL  117 (466)
T ss_dssp             HHHTCCEEECCSSCCC---CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred             HhccccEEecCCCCCc---cCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEE
Confidence            3567888888877654   5654  4778888888888888887776 88888888888888888773238888888888


Q ss_pred             EeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCC
Q 002432          307 SLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLP  386 (922)
Q Consensus       307 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  386 (922)
                      ++++|+++.+|. +.++++|++|++++|. +..++.  ++++++|++|++.++ +.               ....+.+++
T Consensus       118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~-~~---------------~~~~~~~l~  177 (466)
T 1o6v_A          118 TLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQ-VT---------------DLKPLANLT  177 (466)
T ss_dssp             ECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEES-CC---------------CCGGGTTCT
T ss_pred             ECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCc-cc---------------CchhhccCC
Confidence            888888887765 7888888888888875 666653  778888888887532 22               123477777


Q ss_pred             CCCEEEeeecCCC
Q 002432          387 RLTTLEIAVENDN  399 (922)
Q Consensus       387 ~L~~L~l~~~~~~  399 (922)
                      +|+.|+++++...
T Consensus       178 ~L~~L~l~~n~l~  190 (466)
T 1o6v_A          178 TLERLDISSNKVS  190 (466)
T ss_dssp             TCCEEECCSSCCC
T ss_pred             CCCEEECcCCcCC
Confidence            8888888766543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=3.1e-26  Score=257.18  Aligned_cols=175  Identities=19%  Similarity=0.119  Sum_probs=92.3

Q ss_pred             cCCCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCC
Q 002432          651 VLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEP  730 (922)
Q Consensus       651 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~  730 (922)
                      .+++|+.|++++|.++.++.     .+++|++|++++| .++.++.     .+++|++|++++| .++.++.        
T Consensus       235 ~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N-~l~~l~~-----~~~~L~~L~ls~N-~l~~l~~--------  294 (454)
T 1jl5_A          235 NLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDN-YLTDLPE-----LPQSLTFLDVSEN-IFSGLSE--------  294 (454)
T ss_dssp             TCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSEESC--------
T ss_pred             CCCCCCEEECCCCcCCcccc-----cccccCEEECCCC-cccccCc-----ccCcCCEEECcCC-ccCcccC--------
Confidence            57788888888887776532     2478888888885 5666542     2477888888886 4555421        


Q ss_pred             CcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCc
Q 002432          731 PCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNL  810 (922)
Q Consensus       731 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  810 (922)
                         ..++|++|++++|. ++.++.     ..++|++|++++| ++..+|..                         +++|
T Consensus       295 ---~~~~L~~L~l~~N~-l~~i~~-----~~~~L~~L~Ls~N-~l~~lp~~-------------------------~~~L  339 (454)
T 1jl5_A          295 ---LPPNLYYLNASSNE-IRSLCD-----LPPSLEELNVSNN-KLIELPAL-------------------------PPRL  339 (454)
T ss_dssp             ---CCTTCCEEECCSSC-CSEECC-----CCTTCCEEECCSS-CCSCCCCC-------------------------CTTC
T ss_pred             ---cCCcCCEEECcCCc-CCcccC-----CcCcCCEEECCCC-cccccccc-------------------------CCcC
Confidence               02567888887763 444431     1247788888774 55555431                         5677


Q ss_pred             ceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecc-cceEEecCCccccccceEec
Q 002432          811 EELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFC-SYKELFSNGGQVHLIKKLEL  889 (922)
Q Consensus       811 ~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c-~l~~l~~~~~~~~sL~~L~i  889 (922)
                      ++|++++|.+..+..       .+++|++|++++|.+..+|.    -..++..|.  .| ....++.   .+++|+.|++
T Consensus       340 ~~L~L~~N~l~~lp~-------~l~~L~~L~L~~N~l~~l~~----ip~~l~~L~--~n~~~~~i~~---~~~~L~~L~l  403 (454)
T 1jl5_A          340 ERLIASFNHLAEVPE-------LPQNLKQLHVEYNPLREFPD----IPESVEDLR--MNSHLAEVPE---LPQNLKQLHV  403 (454)
T ss_dssp             CEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSSCCC----CCTTCCEEE--CCC--------------------
T ss_pred             CEEECCCCccccccc-------hhhhccEEECCCCCCCcCCC----ChHHHHhhh--hccccccccc---ccCcCCEEEC
Confidence            888887777654322       34677888887777766431    112233332  33 2223322   2589999999


Q ss_pred             cccccccc
Q 002432          890 ICLNDLEY  897 (922)
Q Consensus       890 ~~c~~L~~  897 (922)
                      ++++ ++.
T Consensus       404 s~N~-l~~  410 (454)
T 1jl5_A          404 ETNP-LRE  410 (454)
T ss_dssp             --------
T ss_pred             CCCc-CCc
Confidence            7754 443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=2.3e-25  Score=250.38  Aligned_cols=118  Identities=18%  Similarity=0.182  Sum_probs=58.3

Q ss_pred             CCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEEE
Q 002432          228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILS  307 (922)
Q Consensus       228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~  307 (922)
                      +++|++|++++|...   .+| . |..+++|++|++++|.++.+|  ++.+++|++|++++|.+...+ ++++++|++|+
T Consensus        41 l~~L~~L~Ls~n~l~---~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~  112 (457)
T 3bz5_A           41 LATLTSLDCHNSSIT---DMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLN  112 (457)
T ss_dssp             HTTCCEEECCSSCCC---CCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEE
T ss_pred             cCCCCEEEccCCCcc---cCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEE
Confidence            344444444444333   233 1 345555555555555555543  455555555555555554421 45555555555


Q ss_pred             eecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCC
Q 002432          308 LIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC  359 (922)
Q Consensus       308 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~  359 (922)
                      +++|+++.+|  ++++++|++|++++|. ++.++   ++++++|++|++++|
T Consensus       113 L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          113 CDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLN  158 (457)
T ss_dssp             CCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTC
T ss_pred             CCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCC
Confidence            5555555443  4555555555555543 44432   445555555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=4.4e-25  Score=250.58  Aligned_cols=148  Identities=21%  Similarity=0.281  Sum_probs=112.4

Q ss_pred             cEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCCCCCC---ccccCCCCcCCEEE
Q 002432          232 ELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYSTLGD---ITIIGKLKNLEILS  307 (922)
Q Consensus       232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~---p~~i~~L~~L~~L~  307 (922)
                      +.++.+++...   .+|. +   .++|++|++++|.++.+ |..++++++|++|++++|.+..   +..|.++++|++|+
T Consensus        13 ~~~~c~~~~l~---~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~   85 (455)
T 3v47_A           13 YNAICINRGLH---QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK   85 (455)
T ss_dssp             TEEECCSSCCS---SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred             cccCcCCCCcc---cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence            45666666554   6665 2   37889999999998876 6788899999999999988763   46788899999999


Q ss_pred             eecCCCccc-chhhcCCCCCCEEeccCCCCCCc-cC-cchhCCCCCCCEEEccCCcccccccccCCcccccccCccc-CC
Q 002432          308 LIESDIVEF-PEELGKLTKLRLLDLTNCFHLKV-IA-PNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDE-LM  383 (922)
Q Consensus       308 L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~-~p-~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~-l~  383 (922)
                      +++|+++.+ |..++++++|++|++++|. +.. ++ ...++++++|++|++++|.+..             ..+.. ++
T Consensus        86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-------------~~~~~~~~  151 (455)
T 3v47_A           86 LDYNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKK-------------IQPASFFL  151 (455)
T ss_dssp             CTTCTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCS-------------CCCCGGGG
T ss_pred             CCCCccCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCc-------------cCcccccC
Confidence            999988866 6778889999999999886 554 22 2337888899999998888763             22333 67


Q ss_pred             CCCCCCEEEeeecCCCC
Q 002432          384 PLPRLTTLEIAVENDNA  400 (922)
Q Consensus       384 ~l~~L~~L~l~~~~~~~  400 (922)
                      .+++|++|++++|....
T Consensus       152 ~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A          152 NMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             GCTTCCEEECTTCCBSC
T ss_pred             CCCcccEEeCCCCcccc
Confidence            78888888888776543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=2.3e-24  Score=244.69  Aligned_cols=173  Identities=18%  Similarity=0.243  Sum_probs=126.4

Q ss_pred             EEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc-cC-chhhhccCCCCEEEccC
Q 002432          211 AISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-SL-PSSIDLLVNLQTLCLDY  288 (922)
Q Consensus       211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~l-p~~i~~L~~L~~L~L~~  288 (922)
                      .++..++.+..+|.  -.++|++|++++|.+.   .++...|+++++|++|++++|.+. .+ |..|.++++|++|++++
T Consensus        14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIA---ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EEECCSSCCSSCCC--CCTTCCEEECCSSCCC---EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCCcccCCC--CCCccCEEEecCCccC---cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            45566666677776  2367888888888765   454455688888888888888876 45 45788888888888888


Q ss_pred             CCCCC--ccccCCCCcCCEEEeecCCCcc-cchh--hcCCCCCCEEeccCCCCCCcc-CcchhCCCCCCCEEEccCCccc
Q 002432          289 STLGD--ITIIGKLKNLEILSLIESDIVE-FPEE--LGKLTKLRLLDLTNCFHLKVI-APNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       289 ~~l~~--p~~i~~L~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~~-p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      |.+..  |..|+++++|++|++++|+++. +|..  ++++++|++|++++|. +..+ |...++++++|++|++++|.+.
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCccc
Confidence            88876  6788888888888888888874 4444  7888888888888886 6655 4444788888888888888776


Q ss_pred             ccccccCCcccccccCcccCCCC--CCCCEEEeeecCCCCCC
Q 002432          363 WKVEDEGSSSKKSKASLDELMPL--PRLTTLEIAVENDNALP  402 (922)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~  402 (922)
                      .             ..+..+..+  .+|+.|+++++....++
T Consensus       168 ~-------------~~~~~l~~l~~~~L~~L~l~~n~l~~~~  196 (455)
T 3v47_A          168 S-------------ICEEDLLNFQGKHFTLLRLSSITLQDMN  196 (455)
T ss_dssp             C-------------CCTTTSGGGTTCEEEEEECTTCBCTTCS
T ss_pred             c-------------cChhhhhccccccccccccccCcccccc
Confidence            4             223344433  46777887777655544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=5.1e-24  Score=239.37  Aligned_cols=345  Identities=15%  Similarity=0.128  Sum_probs=234.3

Q ss_pred             ccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEE
Q 002432          205 ALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTL  284 (922)
Q Consensus       205 ~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L  284 (922)
                      ..+++++|++++|.+..+|....+++|++|++++|...   .+|   ++.+++|++|++++|.++.+|  ++++++|++|
T Consensus        40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~---~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L  111 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT---TLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL  111 (457)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCS---CCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred             HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCC---eEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence            46789999999999988886559999999999999876   565   689999999999999999886  8999999999


Q ss_pred             EccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccc
Q 002432          285 CLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWK  364 (922)
Q Consensus       285 ~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~  364 (922)
                      ++++|.+...+ ++.+++|++|++++|+++.++  ++++++|++|++++|..++.++   ++.+++|++|++++|.+.. 
T Consensus       112 ~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~-  184 (457)
T 3bz5_A          112 NCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE-  184 (457)
T ss_dssp             ECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC-
T ss_pred             ECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce-
Confidence            99999998843 899999999999999999885  8999999999999997677772   7899999999999998873 


Q ss_pred             ccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccccccccceeEEEEccCCCCCCccccccccccccccccccc
Q 002432          365 VEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILD  444 (922)
Q Consensus       365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  444 (922)
                                   .  .++.+++|+.|++++|....++-                                         
T Consensus       185 -------------l--~l~~l~~L~~L~l~~N~l~~~~l-----------------------------------------  208 (457)
T 3bz5_A          185 -------------L--DVSQNKLLNRLNCDTNNITKLDL-----------------------------------------  208 (457)
T ss_dssp             -------------C--CCTTCTTCCEEECCSSCCSCCCC-----------------------------------------
T ss_pred             -------------e--ccccCCCCCEEECcCCcCCeecc-----------------------------------------
Confidence                         1  27888999999999887654421                                         


Q ss_pred             cccceeeEecccccchhhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCcccccCcccc
Q 002432          445 HQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFP  524 (922)
Q Consensus       445 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~  524 (922)
                                           ..+++|+.|+++++.-.. ++    ...+++|+.|+++++.. +.+       ..+.++
T Consensus       209 ---------------------~~l~~L~~L~Ls~N~l~~-ip----~~~l~~L~~L~l~~N~l-~~~-------~~~~l~  254 (457)
T 3bz5_A          209 ---------------------NQNIQLTFLDCSSNKLTE-ID----VTPLTQLTYFDCSVNPL-TEL-------DVSTLS  254 (457)
T ss_dssp             ---------------------TTCTTCSEEECCSSCCSC-CC----CTTCTTCSEEECCSSCC-SCC-------CCTTCT
T ss_pred             ---------------------ccCCCCCEEECcCCcccc-cC----ccccCCCCEEEeeCCcC-CCc-------CHHHCC
Confidence                                 112344444444432211 11    24566677777666632 111       133445


Q ss_pred             cccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccCCCCCCcc
Q 002432          525 LLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVV  604 (922)
Q Consensus       525 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  604 (922)
                      +|+.|.+++                 .+|+.|++.+|..+..++    ...+++|+.|++++|+.+..++.         
T Consensus       255 ~L~~L~l~~-----------------n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~---------  304 (457)
T 3bz5_A          255 KLTTLHCIQ-----------------TDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDC---------  304 (457)
T ss_dssp             TCCEEECTT-----------------CCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEEC---------
T ss_pred             CCCEEeccC-----------------CCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceecc---------
Confidence            555444322                 245555566665444432    23456666666666665555442         


Q ss_pred             CCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCcccccCccEEE
Q 002432          605 DNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLI  684 (922)
Q Consensus       605 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~  684 (922)
                               ..++|+.|++++|++|+.+....+....   +  .+..+++|+.|++++|.++.+         ++|..|+
T Consensus       305 ---------~~~~L~~L~l~~~~~L~~L~L~~N~l~~---l--~l~~l~~L~~L~l~~N~l~~l---------~~L~~L~  361 (457)
T 3bz5_A          305 ---------QAAGITELDLSQNPKLVYLYLNNTELTE---L--DVSHNTKLKSLSCVNAHIQDF---------SSVGKIP  361 (457)
T ss_dssp             ---------TTCCCSCCCCTTCTTCCEEECTTCCCSC---C--CCTTCTTCSEEECCSSCCCBC---------TTGGGSS
T ss_pred             ---------CCCcceEechhhcccCCEEECCCCcccc---c--ccccCCcCcEEECCCCCCCCc---------ccccccc
Confidence                     2345555556665555555544432211   1  134567777777777766653         4444454


Q ss_pred             eccCcCccccccHHHHhhhccccEEEEecc
Q 002432          685 VWGCQKLKFMFYASMIKSLEQLQHLEIRNC  714 (922)
Q Consensus       685 l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c  714 (922)
                      +++ +.+...      ..+..|+.+++++.
T Consensus       362 l~~-n~l~g~------~~~~~l~~l~l~~N  384 (457)
T 3bz5_A          362 ALN-NNFEAE------GQTITMPKETLTNN  384 (457)
T ss_dssp             GGG-TSEEEE------EEEEECCCBCCBTT
T ss_pred             ccC-CcEEec------ceeeecCccccccC
Confidence            444 233221      24466777777764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=3.5e-24  Score=237.44  Aligned_cols=153  Identities=16%  Similarity=0.298  Sum_probs=124.1

Q ss_pred             CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCCCCC--ccccCCCCc
Q 002432          226 LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKN  302 (922)
Q Consensus       226 ~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~  302 (922)
                      ..+.++++|++.++...   .+|..+|..+++|++|++++|.+..+| ..++.+++|++|++++|.+..  |..|+++++
T Consensus        42 ~~l~~l~~l~l~~~~l~---~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  118 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL  118 (390)
T ss_dssp             GGGCCCSEEEEESCEES---EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cccCCceEEEecCCchh---hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence            36688888888888765   788888888999999999999888775 478889999999999998887  466888999


Q ss_pred             CCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCccc
Q 002432          303 LEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDE  381 (922)
Q Consensus       303 L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~  381 (922)
                      |++|++++|+++.+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+..                ..
T Consensus       119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------~~  181 (390)
T 3o6n_A          119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH----------------VD  181 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB----------------CC
T ss_pred             CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc----------------cc
Confidence            99999999988888876 4889999999999875 777766668888999999998887763                23


Q ss_pred             CCCCCCCCEEEeeecCC
Q 002432          382 LMPLPRLTTLEIAVEND  398 (922)
Q Consensus       382 l~~l~~L~~L~l~~~~~  398 (922)
                      ++.+++|+.|+++++..
T Consensus       182 ~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          182 LSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             GGGCTTCSEEECCSSCC
T ss_pred             cccccccceeecccccc
Confidence            55667888888876653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=5.2e-24  Score=232.29  Aligned_cols=147  Identities=23%  Similarity=0.348  Sum_probs=81.6

Q ss_pred             CCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEEE
Q 002432          228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILS  307 (922)
Q Consensus       228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~  307 (922)
                      +++|+.|+++++...   .++.  |..+++|++|++++|.+..+|. +..+++|++|++++|.+..++.+.++++|++|+
T Consensus        43 l~~L~~L~l~~~~i~---~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~  116 (347)
T 4fmz_A           43 LESITKLVVAGEKVA---SIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELY  116 (347)
T ss_dssp             HTTCSEEECCSSCCC---CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             cccccEEEEeCCccc---cchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEE
Confidence            344555555554433   3332  3556666666666666665554 556666666666666655544566666666666


Q ss_pred             eecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCC
Q 002432          308 LIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPR  387 (922)
Q Consensus       308 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  387 (922)
                      +++|.++.+|. +.++++|++|++++|.....++.  ++++++|++|++++|.+..               ...+..+++
T Consensus       117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~---------------~~~~~~l~~  178 (347)
T 4fmz_A          117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD---------------VTPIANLTD  178 (347)
T ss_dssp             CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC---------------CGGGGGCTT
T ss_pred             CcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC---------------chhhccCCC
Confidence            66666665554 56666666666666543444433  5666666666666655442               112455556


Q ss_pred             CCEEEeeecCC
Q 002432          388 LTTLEIAVEND  398 (922)
Q Consensus       388 L~~L~l~~~~~  398 (922)
                      |+.|+++++..
T Consensus       179 L~~L~l~~n~l  189 (347)
T 4fmz_A          179 LYSLSLNYNQI  189 (347)
T ss_dssp             CSEEECTTSCC
T ss_pred             CCEEEccCCcc
Confidence            66666655543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=3.9e-23  Score=225.31  Aligned_cols=282  Identities=18%  Similarity=0.209  Sum_probs=203.2

Q ss_pred             cccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCE
Q 002432          204 DALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQT  283 (922)
Q Consensus       204 ~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~  283 (922)
                      ...+++++|++.++.+..++....+++|++|++++|...   .++.  |..+++|++|++++|.+..+| .+..+++|++
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~---~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~  114 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT---DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE  114 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred             hhcccccEEEEeCCccccchhhhhcCCccEEEccCCccc---cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence            456789999999999998887668999999999999776   5665  699999999999999999886 5999999999


Q ss_pred             EEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccc
Q 002432          284 LCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEW  363 (922)
Q Consensus       284 L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~  363 (922)
                      |++++|.+.....+..+++|++|++++|.....+..+.++++|++|++++|. +..++.  ++++++|++|++++|.+..
T Consensus       115 L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~  191 (347)
T 4fmz_A          115 LYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIED  191 (347)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred             EECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCcccc
Confidence            9999999998444999999999999999555444569999999999999986 777765  8899999999999998763


Q ss_pred             cccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccccccccceeEEEEccCCCCCCcccccccccccccccccc
Q 002432          364 KVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLIL  443 (922)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  443 (922)
                                     +..+..+++|+.|+++++....++..                                       
T Consensus       192 ---------------~~~~~~l~~L~~L~l~~n~l~~~~~~---------------------------------------  217 (347)
T 4fmz_A          192 ---------------ISPLASLTSLHYFTAYVNQITDITPV---------------------------------------  217 (347)
T ss_dssp             ---------------CGGGGGCTTCCEEECCSSCCCCCGGG---------------------------------------
T ss_pred             ---------------cccccCCCccceeecccCCCCCCchh---------------------------------------
Confidence                           23377889999999998876543321                                       


Q ss_pred             ccccceeeEecccccchhhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCcccccCccc
Q 002432          444 DHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAF  523 (922)
Q Consensus       444 ~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  523 (922)
                                            ..+++|+.|++.++.... ...   ...+++|++|+++++.. ..+      .....+
T Consensus       218 ----------------------~~~~~L~~L~l~~n~l~~-~~~---~~~l~~L~~L~l~~n~l-~~~------~~~~~l  264 (347)
T 4fmz_A          218 ----------------------ANMTRLNSLKIGNNKITD-LSP---LANLSQLTWLEIGTNQI-SDI------NAVKDL  264 (347)
T ss_dssp             ----------------------GGCTTCCEEECCSSCCCC-CGG---GTTCTTCCEEECCSSCC-CCC------GGGTTC
T ss_pred             ----------------------hcCCcCCEEEccCCccCC-Ccc---hhcCCCCCEEECCCCcc-CCC------hhHhcC
Confidence                                  122344555555443221 111   24567777777776632 211      123455


Q ss_pred             ccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccc
Q 002432          524 PLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCN  588 (922)
Q Consensus       524 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  588 (922)
                      ++|+.|+++++. +..+    .....+++|+.|++.+| .+....+ ..+..+++|++|++++|+
T Consensus       265 ~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          265 TKLKMLNVGSNQ-ISDI----SVLNNLSQLNSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             TTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSS-CCCGGGH-HHHHTCTTCSEEECCSSS
T ss_pred             CCcCEEEccCCc-cCCC----hhhcCCCCCCEEECcCC-cCCCcCh-hHhhccccCCEEEccCCc
Confidence            666666666652 3332    12445667777777776 3433322 344566777777777765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=4.2e-23  Score=235.55  Aligned_cols=147  Identities=24%  Similarity=0.312  Sum_probs=71.6

Q ss_pred             EEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCC
Q 002432          211 AISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYS  289 (922)
Q Consensus       211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~  289 (922)
                      .++..++.+..+|... .+++++|++++|...   .++...|.++++|++|+|++|.+..+ |..|+++++|++|+|++|
T Consensus        15 ~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           15 AVLCHRKRFVAVPEGI-PTETRLLDLGKNRIK---TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             EEECCSCCCSSCCSCC-CTTCSEEECCSSCCC---EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcCcCCCCC-CCCCcEEECCCCccc---eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            4445555555555432 234555555555443   33333345555555555555555543 444555555555555555


Q ss_pred             CCCC-c-cccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432          290 TLGD-I-TIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       290 ~l~~-p-~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      .+.. | ..|.++++|++|++++|+++.+ |..+.++++|++|++++|. +..++...++++++|++|++++|.+.
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCc
Confidence            5544 2 3345555555555555555433 3334555555555555543 44443333455555555555554443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.4e-23  Score=245.56  Aligned_cols=152  Identities=16%  Similarity=0.309  Sum_probs=120.6

Q ss_pred             CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCCCCC--ccccCCCCc
Q 002432          226 LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKN  302 (922)
Q Consensus       226 ~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~  302 (922)
                      ..+++++.+++.++...   .+|..+|.++++|++|++++|.+..+| ..|+.+++|++|+|++|.+..  |..|+++++
T Consensus        48 l~l~~l~~l~l~~~~l~---~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  124 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL  124 (597)
T ss_dssp             GGGCCCSEEEESSCEES---EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ccCCCceEEEeeCCCCC---CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence            35678888888888765   788888888888999999988888765 478888889999998888877  456788888


Q ss_pred             CCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCccc
Q 002432          303 LEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDE  381 (922)
Q Consensus       303 L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~  381 (922)
                      |++|++++|.++.+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+..                ..
T Consensus       125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~----------------~~  187 (597)
T 3oja_B          125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH----------------VD  187 (597)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB----------------CC
T ss_pred             CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC----------------cC
Confidence            99999988888888776 4888888888888875 777766668888888888888887763                13


Q ss_pred             CCCCCCCCEEEeeecC
Q 002432          382 LMPLPRLTTLEIAVEN  397 (922)
Q Consensus       382 l~~l~~L~~L~l~~~~  397 (922)
                      ++.+++|+.|++++|.
T Consensus       188 ~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          188 LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             GGGCTTCSEEECCSSC
T ss_pred             hhhhhhhhhhhcccCc
Confidence            4556677777777654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=1.1e-22  Score=225.37  Aligned_cols=133  Identities=18%  Similarity=0.225  Sum_probs=117.2

Q ss_pred             CCCCCcEEEeeCCcCccCchh-hhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEE
Q 002432          254 GMRELKVVDLTNMQLFSLPSS-IDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLL  329 (922)
Q Consensus       254 ~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L  329 (922)
                      .+.++|+|+++++.+..+|.. +..+++|++|++++|.+..  +..|..+++|++|++++|.++.+|. .++++++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            468999999999999999875 6899999999999999988  4689999999999999999998754 58999999999


Q ss_pred             eccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCC
Q 002432          330 DLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNA  400 (922)
Q Consensus       330 ~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  400 (922)
                      ++++|. ++.+|...++++++|++|++++|.+..             ..+..++.+++|++|++++|....
T Consensus       123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER-------------IEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCB-------------CCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCc-------------cChhhccCCCCCCEEECCCCcCCc
Confidence            999986 889998867999999999999998874             334568889999999998876543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=3.8e-22  Score=227.56  Aligned_cols=308  Identities=18%  Similarity=0.175  Sum_probs=222.3

Q ss_pred             EecCCCCCCCCCccccCcceEEEeecCCCCCCCC-CC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcC
Q 002432          191 LVRNGDVWEWPDEDALKKCYAISWIDSSGGELPE-GL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQL  268 (922)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i  268 (922)
                      ...+.++..+|. ...+.+++|++++|.+..++. .+ ++++|++|++++|.+.   .++...|.++++|++|+|++|.+
T Consensus        17 ~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l   92 (477)
T 2id5_A           17 LCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS---AVEPGAFNNLFNLRTLGLRSNRL   92 (477)
T ss_dssp             ECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCC
T ss_pred             EeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC---EeChhhhhCCccCCEEECCCCcC
Confidence            344455666664 567899999999999988754 33 8999999999999776   56555679999999999999999


Q ss_pred             ccCch-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCccCcch
Q 002432          269 FSLPS-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNV  344 (922)
Q Consensus       269 ~~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~  344 (922)
                      ..+|. .+.++++|++|++++|.+..  +..|.++++|++|++++|.++.+ |..+.++++|++|++++|. +..++...
T Consensus        93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~  171 (477)
T 2id5_A           93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEA  171 (477)
T ss_dssp             CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHH
T ss_pred             CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhH
Confidence            99976 57999999999999999987  57899999999999999999976 5578999999999999986 88898877


Q ss_pred             hCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCC-CCCCccccccccceeEEEEccCCCC
Q 002432          345 IASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEND-NALPEGFFVRELERFKILIGDRSFE  423 (922)
Q Consensus       345 l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~l~~~~~~~~~~  423 (922)
                      ++++++|+.|++++|.+..             .....+..+++|+.|+++++.. ..++...                  
T Consensus       172 l~~l~~L~~L~l~~n~i~~-------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~------------------  220 (477)
T 2id5_A          172 LSHLHGLIVLRLRHLNINA-------------IRDYSFKRLYRLKVLEISHWPYLDTMTPNC------------------  220 (477)
T ss_dssp             HTTCTTCCEEEEESCCCCE-------------ECTTCSCSCTTCCEEEEECCTTCCEECTTT------------------
T ss_pred             hcccCCCcEEeCCCCcCcE-------------eChhhcccCcccceeeCCCCccccccCccc------------------
Confidence            9999999999999998874             3346788899999999998652 2222211                  


Q ss_pred             CCccccccccccccccccccccccceeeEecccccchhhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEe
Q 002432          424 PPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQ  503 (922)
Q Consensus       424 ~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~  503 (922)
                                         +                       ...+|+.|++.++.-. .++.. ....+++|+.|+++
T Consensus       221 -------------------~-----------------------~~~~L~~L~l~~n~l~-~~~~~-~~~~l~~L~~L~Ls  256 (477)
T 2id5_A          221 -------------------L-----------------------YGLNLTSLSITHCNLT-AVPYL-AVRHLVYLRFLNLS  256 (477)
T ss_dssp             -------------------T-----------------------TTCCCSEEEEESSCCC-SCCHH-HHTTCTTCCEEECC
T ss_pred             -------------------c-----------------------cCccccEEECcCCccc-ccCHH-HhcCccccCeeECC
Confidence                               0                       0124555555544321 12110 11456777777777


Q ss_pred             cCCCceEeecCcccccCcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEE
Q 002432          504 NNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIA  583 (922)
Q Consensus       504 ~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~  583 (922)
                      ++. +..++.    .....+++|+.|+++++. +..+..  ..+..+++|+.|++.++ +++.++ ...+..+++|++|+
T Consensus       257 ~n~-l~~~~~----~~~~~l~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~  326 (477)
T 2id5_A          257 YNP-ISTIEG----SMLHELLRLQEIQLVGGQ-LAVVEP--YAFRGLNYLRVLNVSGN-QLTTLE-ESVFHSVGNLETLI  326 (477)
T ss_dssp             SSC-CCEECT----TSCTTCTTCCEEECCSSC-CSEECT--TTBTTCTTCCEEECCSS-CCSCCC-GGGBSCGGGCCEEE
T ss_pred             CCc-CCccCh----hhccccccCCEEECCCCc-cceECH--HHhcCcccCCEEECCCC-cCceeC-HhHcCCCcccCEEE
Confidence            764 333221    113455667777776653 332211  12455677888888777 565553 34556677888888


Q ss_pred             Ecccc
Q 002432          584 VIKCN  588 (922)
Q Consensus       584 l~~c~  588 (922)
                      +++++
T Consensus       327 l~~N~  331 (477)
T 2id5_A          327 LDSNP  331 (477)
T ss_dssp             CCSSC
T ss_pred             ccCCC
Confidence            87765

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.88  E-value=2.4e-24  Score=247.79  Aligned_cols=169  Identities=13%  Similarity=0.113  Sum_probs=129.8

Q ss_pred             CcceEeCCCCCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCC
Q 002432            3 SEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTENN   82 (922)
Q Consensus         3 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~~~l~~~~~~~~~~   82 (922)
                      +..+|++++|+++|||+||+++|+....++++++++++|+++|+|+||||+++|+.|+.+ +. +|.+.+.+.     .+
T Consensus       284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~-----l~  356 (549)
T 2a5y_B          284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNK-----LE  356 (549)
T ss_dssp             CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHH-----HH
T ss_pred             CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHH-----hh
Confidence            346899999999999999999995444357889999999999999999999999999877 43 233333321     11


Q ss_pred             CccchHHHHHHHHHHHhcCCchhHHHHHh-----------hcccc-CCCchhHHHHHHHHhc--CCccccc----HHHHH
Q 002432           83 FHRELGKAYTAIKLSYDALKGEQLKKIFQ-----------LCSLM-PKSFFASDLFKYCIGL--GIFRGID----MEDAR  144 (922)
Q Consensus        83 ~~~~~~~~~~~l~lsY~~L~~~~lk~cfl-----------y~~~f-~~~~~~~~Li~~Wiae--G~i~~~~----~e~~~  144 (922)
                      .. ...++++++++||++||++ +|.||+           |||+| ++|.|.   +++|+|+  ||+.+..    .++++
T Consensus       357 ~~-~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~---i~~w~a~~~G~i~~~~~~~~~~~~~  431 (549)
T 2a5y_B          357 SR-GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP---VKLWSCVIPVDICSNEEEQLDDEVA  431 (549)
T ss_dssp             HH-CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE---HHHHHHHSCC-------CCCTHHHH
T ss_pred             cc-cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee---eeeeeeeccceeccCCCCCCHHHHH
Confidence            10 1234888999999999998 999999           99999 789987   8999999  9998654    44444


Q ss_pred             HHHHHHHHHHHhhcceeccc--ccceEEecHHHHHHHHHHHcccC
Q 002432          145 NKLYTLVHELKDSCLLLEGY--SCREFSMHDVVHDVAILIACGEQ  187 (922)
Q Consensus       145 ~~~~~~i~~L~~~~l~~~~~--~~~~~~mhdli~dl~~~~~~~e~  187 (922)
                      +    +|++|+++||++...  ....|+|||+||++|..++.+++
T Consensus       432 ~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~  472 (549)
T 2a5y_B          432 D----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT  472 (549)
T ss_dssp             H----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred             H----HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence            3    599999999998753  34579999999999998887665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=9.8e-22  Score=229.94  Aligned_cols=133  Identities=18%  Similarity=0.231  Sum_probs=117.5

Q ss_pred             CCCCCcEEEeeCCcCccCchh-hhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEE
Q 002432          254 GMRELKVVDLTNMQLFSLPSS-IDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLL  329 (922)
Q Consensus       254 ~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L  329 (922)
                      .+.++++|+++++.+..+|.. ++++++|++|++++|.+..  +..|+.+++|++|++++|.++.+|.. ++++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            468899999999999999875 6889999999999999988  46999999999999999999988654 7999999999


Q ss_pred             eccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCC
Q 002432          330 DLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNA  400 (922)
Q Consensus       330 ~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  400 (922)
                      ++++|. +..+|...++++++|++|++++|.+..             ..+..++.+++|+.|++++|....
T Consensus       129 ~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          129 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER-------------IEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCB-------------CCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             EeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCC-------------CChhhhhcCCcCcEEECcCCCCCC
Confidence            999986 889998867999999999999998874             445678899999999998886543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=6.8e-21  Score=205.80  Aligned_cols=151  Identities=19%  Similarity=0.255  Sum_probs=106.5

Q ss_pred             CccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEE
Q 002432          230 QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEIL  306 (922)
Q Consensus       230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L  306 (922)
                      +++.++++++...   .+|..+   .++|++|++++|.+..++ ..++++++|++|++++|.+..  |..|+++++|++|
T Consensus        34 ~l~~l~~~~~~l~---~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           34 HLRVVQCSDLGLK---AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             ETTEEECCSSCCS---SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred             cCCEEECCCCCcc---ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence            5777777777655   566644   357788888888887763 467888888888888888776  5678888888888


Q ss_pred             EeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCC
Q 002432          307 SLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLP  386 (922)
Q Consensus       307 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  386 (922)
                      ++++|+++.+|..+.  ++|++|++++|. +..+|...++++++|++|++++|.+..           .+..+..+..+ 
T Consensus       108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~~l-  172 (332)
T 2ft3_A          108 YISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLEN-----------SGFEPGAFDGL-  172 (332)
T ss_dssp             ECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBG-----------GGSCTTSSCSC-
T ss_pred             ECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCcccc-----------CCCCcccccCC-
Confidence            888888887776655  678888888875 777776667788888888888776642           11223445555 


Q ss_pred             CCCEEEeeecCCCCC
Q 002432          387 RLTTLEIAVENDNAL  401 (922)
Q Consensus       387 ~L~~L~l~~~~~~~~  401 (922)
                      +|+.|++++|....+
T Consensus       173 ~L~~L~l~~n~l~~l  187 (332)
T 2ft3_A          173 KLNYLRISEAKLTGI  187 (332)
T ss_dssp             CCSCCBCCSSBCSSC
T ss_pred             ccCEEECcCCCCCcc
Confidence            666666666654433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.86  E-value=2.7e-20  Score=200.98  Aligned_cols=153  Identities=19%  Similarity=0.263  Sum_probs=108.7

Q ss_pred             CccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEE
Q 002432          230 QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEIL  306 (922)
Q Consensus       230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L  306 (922)
                      ++++++++++...   .+|..+   .+.|++|++++|.++.+|. .++++++|++|++++|.+..  |..|+++++|++|
T Consensus        32 ~l~~l~~~~~~l~---~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           32 HLRVVQCSDLGLE---KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             ETTEEECTTSCCC---SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCeEEEecCCCcc---ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            5677777766554   566543   3577888888888877754 67788888888888888776  5778888888888


Q ss_pred             EeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCC
Q 002432          307 SLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLP  386 (922)
Q Consensus       307 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  386 (922)
                      ++++|+++.+|..+.  ++|++|++++|. +..++...++++++|++|++++|.+..           .+..+..+..++
T Consensus       106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~~l~  171 (330)
T 1xku_A          106 YLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS-----------SGIENGAFQGMK  171 (330)
T ss_dssp             ECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG-----------GGBCTTGGGGCT
T ss_pred             ECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCc-----------cCcChhhccCCC
Confidence            888888887776654  678888888875 777776667888888888888776642           112345566777


Q ss_pred             CCCEEEeeecCCCCCC
Q 002432          387 RLTTLEIAVENDNALP  402 (922)
Q Consensus       387 ~L~~L~l~~~~~~~~~  402 (922)
                      +|+.|+++++....+|
T Consensus       172 ~L~~L~l~~n~l~~l~  187 (330)
T 1xku_A          172 KLSYIRIADTNITTIP  187 (330)
T ss_dssp             TCCEEECCSSCCCSCC
T ss_pred             CcCEEECCCCccccCC
Confidence            7777777766655443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.86  E-value=9.2e-23  Score=239.90  Aligned_cols=64  Identities=17%  Similarity=-0.003  Sum_probs=36.8

Q ss_pred             cccCcceEeechhhhhhh-cCCCCCCCCCCCCccEEEeecCCCccc-chhHHhhcCCCCeEEEecccce
Q 002432          806 IFPNLEELGLSIKDIMML-LQGDFPQDHLFGSLKDLEVRDDDSASV-PIGLLEKFHGLENLNLSFCSYK  872 (922)
Q Consensus       806 ~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~sL~~L~l~~~~l~~l-p~~~l~~l~~L~~L~l~~c~l~  872 (922)
                      .+++|++|++++|++... .+..   ...+++|+.|+|++|.+..- ...+.+.+++|+.|++++|+++
T Consensus       461 ~~~~L~~L~L~~n~l~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          461 YSPNVRWMLLGYVGESDEGLMEF---SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             SCTTCCEEEECSCCSSHHHHHHH---HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             hCccceEeeccCCCCCHHHHHHH---HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            366677777777665431 1111   12456777777777665431 2233456777777777777644

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=6.3e-21  Score=204.83  Aligned_cols=173  Identities=20%  Similarity=0.245  Sum_probs=153.0

Q ss_pred             cCcceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEE
Q 002432          206 LKKCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTL  284 (922)
Q Consensus       206 ~~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L  284 (922)
                      ..+++.|++.+|.+..+|..+ ++++|++|++++|...   .+|..+ +++++|++|++++|.+..+|..++++++|++|
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~---~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM---ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC---CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc---chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence            357899999999999998876 8999999999999876   788765 89999999999999999999999999999999


Q ss_pred             EccCCCCCC--ccccC---------CCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCE
Q 002432          285 CLDYSTLGD--ITIIG---------KLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEE  353 (922)
Q Consensus       285 ~L~~~~l~~--p~~i~---------~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~  353 (922)
                      ++++|.+..  |..++         ++++|++|++++|+++.+|..++++++|++|++++|. +..+|.. ++++++|++
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~  233 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEE  233 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCE
Confidence            999987544  66655         4999999999999999999999999999999999986 8888886 999999999


Q ss_pred             EEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecC
Q 002432          354 LYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEN  397 (922)
Q Consensus       354 L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  397 (922)
                      |++++|.+..             ..+..++.+++|+.|++++|.
T Consensus       234 L~Ls~n~~~~-------------~~p~~~~~l~~L~~L~L~~n~  264 (328)
T 4fcg_A          234 LDLRGCTALR-------------NYPPIFGGRAPLKRLILKDCS  264 (328)
T ss_dssp             EECTTCTTCC-------------BCCCCTTCCCCCCEEECTTCT
T ss_pred             EECcCCcchh-------------hhHHHhcCCCCCCEEECCCCC
Confidence            9999988775             556778899999999998765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.86  E-value=1.4e-20  Score=203.22  Aligned_cols=171  Identities=18%  Similarity=0.261  Sum_probs=134.4

Q ss_pred             cceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEc
Q 002432          208 KCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCL  286 (922)
Q Consensus       208 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L  286 (922)
                      +++.+++.++.+..+|... .+++++|++++|...   .++...|.++++|++|++++|.++.+ |..++++++|++|++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS---ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCC---ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            5788888888888888655 468999999998765   56665678999999999999999876 778999999999999


Q ss_pred             cCCCCCC-ccccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCc--cCcchhCCCCCCCEEEccCCccc
Q 002432          287 DYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKV--IAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       287 ~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~--~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      ++|.+.. |..+.  ++|++|++++|+++.+|.. +.++++|++|++++|. ++.  ++...++.+ +|++|++++|.+.
T Consensus       110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCC
Confidence            9999888 66554  8999999999999888764 7889999999999986 542  333447777 8999999988876


Q ss_pred             ccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCC
Q 002432          363 WKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALP  402 (922)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  402 (922)
                      .              .+..+.  ++|++|++++|....++
T Consensus       186 ~--------------l~~~~~--~~L~~L~l~~n~i~~~~  209 (332)
T 2ft3_A          186 G--------------IPKDLP--ETLNELHLDHNKIQAIE  209 (332)
T ss_dssp             S--------------CCSSSC--SSCSCCBCCSSCCCCCC
T ss_pred             c--------------cCcccc--CCCCEEECCCCcCCccC
Confidence            2              223332  68888888888766554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=6.2e-21  Score=204.87  Aligned_cols=132  Identities=22%  Similarity=0.315  Sum_probs=87.0

Q ss_pred             CCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccC
Q 002432          255 MRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTN  333 (922)
Q Consensus       255 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~  333 (922)
                      ..++++|++++|.+..+|..++++++|++|++++|.+.. |..++++++|++|++++|.++.+|..++++++|++|++++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence            466777777777777777777777777777777777666 6667777777777777777777777777777777777777


Q ss_pred             CCCCCccCcchhCC---------CCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCC
Q 002432          334 CFHLKVIAPNVIAS---------FTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL  401 (922)
Q Consensus       334 ~~~l~~~p~~~l~~---------L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  401 (922)
                      |...+.+|.. ++.         +++|++|++++|.+.              ..+..++.+++|++|++++|....+
T Consensus       160 n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~--------------~lp~~l~~l~~L~~L~L~~N~l~~l  221 (328)
T 4fcg_A          160 CPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR--------------SLPASIANLQNLKSLKIRNSPLSAL  221 (328)
T ss_dssp             ETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC--------------CCCGGGGGCTTCCEEEEESSCCCCC
T ss_pred             CCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC--------------cchHhhcCCCCCCEEEccCCCCCcC
Confidence            6656666654 333         666666666666554              2334556666666666666554433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.85  E-value=5.2e-20  Score=198.78  Aligned_cols=170  Identities=21%  Similarity=0.289  Sum_probs=127.1

Q ss_pred             cceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEc
Q 002432          208 KCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCL  286 (922)
Q Consensus       208 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L  286 (922)
                      +++.+++.++.+..+|... .+++++|++++|...   .++...|.++++|++|++++|.+..+ |..++++++|++|++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKIT---EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCccccCccC-CCCCeEEECCCCcCC---EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            5677888888877777644 367888888888766   56666668888888888888888876 778888888888888


Q ss_pred             cCCCCCC-ccccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCc--cCcchhCCCCCCCEEEccCCccc
Q 002432          287 DYSTLGD-ITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKV--IAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       287 ~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      ++|.+.. |..+.  ++|++|++++|.++.++. .+.++++|++|++++|. +..  +....++++++|++|++++|.+.
T Consensus       108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccc
Confidence            8888877 65554  788888888888887755 47888888888888875 542  33334788888888888888776


Q ss_pred             ccccccCCcccccccCcccCCCCCCCCEEEeeecCCCC
Q 002432          363 WKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNA  400 (922)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  400 (922)
                      .              .+..+.  ++|++|++++|....
T Consensus       185 ~--------------l~~~~~--~~L~~L~l~~n~l~~  206 (330)
T 1xku_A          185 T--------------IPQGLP--PSLTELHLDGNKITK  206 (330)
T ss_dssp             S--------------CCSSCC--TTCSEEECTTSCCCE
T ss_pred             c--------------CCcccc--ccCCEEECCCCcCCc
Confidence            2              222222  678888888776543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.84  E-value=1.1e-20  Score=201.70  Aligned_cols=174  Identities=17%  Similarity=0.250  Sum_probs=141.9

Q ss_pred             CcceEEEeecCCCC---CCCCCC-CCCCccEEEccC-CCCcCCCCCChHHhhCCCCCcEEEeeCCcCc-cCchhhhccCC
Q 002432          207 KKCYAISWIDSSGG---ELPEGL-ECPQLELLLLSS-EHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-SLPSSIDLLVN  280 (922)
Q Consensus       207 ~~l~~L~l~~~~~~---~l~~~~-~~~~Lr~L~l~~-~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~  280 (922)
                      .++++|++.++.+.   .+|..+ ++++|++|++++ |....  .+|..+ .++++|++|++++|.+. .+|..++++++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~--~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG--PIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES--CCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc--cCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence            57899999999886   466655 889999999985 65542  567664 88999999999999988 67888999999


Q ss_pred             CCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCc-ccchhhcCCC-CCCEEeccCCCCCC-ccCcchhCCCCCCCEEE
Q 002432          281 LQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIV-EFPEELGKLT-KLRLLDLTNCFHLK-VIAPNVIASFTRLEELY  355 (922)
Q Consensus       281 L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~l~-~~p~~~l~~L~~L~~L~  355 (922)
                      |++|++++|.+..  |..+..+++|++|++++|+++ .+|..++++. +|++|++++|. +. .+|.. ++.++ |++|+
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~-~~~l~-L~~L~  203 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPT-FANLN-LAFVD  203 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGG-GGGCC-CSEEE
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChH-HhCCc-ccEEE
Confidence            9999999999874  788889999999999999888 7888888888 89999999886 54 55655 88887 99999


Q ss_pred             ccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432          356 MSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN  399 (922)
Q Consensus       356 L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  399 (922)
                      +++|.+..             ..+..+..+++|+.|++++|...
T Consensus       204 Ls~N~l~~-------------~~~~~~~~l~~L~~L~L~~N~l~  234 (313)
T 1ogq_A          204 LSRNMLEG-------------DASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             CCSSEEEE-------------CCGGGCCTTSCCSEEECCSSEEC
T ss_pred             CcCCcccC-------------cCCHHHhcCCCCCEEECCCCcee
Confidence            99988774             45577888889999998877643

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.84  E-value=5.6e-22  Score=233.19  Aligned_cols=99  Identities=14%  Similarity=0.187  Sum_probs=49.1

Q ss_pred             CcEEEeeCCc-Cc--cCchhhhccCCCCEEEccCCCCCC--c----cccCCCCcCCEEEeecCCCc-----ccchhhcCC
Q 002432          258 LKVVDLTNMQ-LF--SLPSSIDLLVNLQTLCLDYSTLGD--I----TIIGKLKNLEILSLIESDIV-----EFPEELGKL  323 (922)
Q Consensus       258 Lr~L~L~~~~-i~--~lp~~i~~L~~L~~L~L~~~~l~~--p----~~i~~L~~L~~L~L~~~~l~-----~lp~~i~~L  323 (922)
                      |++|++++|. +.  .++..+..+++|++|+|++|.+..  +    ..+..+++|++|++++|.++     .++..+.++
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            5666665554 11  122333355556666666555432  1    12334555566666555543     233334555


Q ss_pred             CCCCEEeccCCCCCCccCcchhCCCCCCCEEEccC
Q 002432          324 TKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN  358 (922)
Q Consensus       324 ~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~  358 (922)
                      ++|++|++++|. +..+|.. ++++++|++|+++.
T Consensus       220 ~~L~~L~L~~~~-~~~l~~~-~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          220 RSLVSVKVGDFE-ILELVGF-FKAAANLEEFCGGS  252 (592)
T ss_dssp             TTCCEEECSSCB-GGGGHHH-HHHCTTCCEEEECB
T ss_pred             CCCcEEeccCcc-HHHHHHH-HhhhhHHHhhcccc
Confidence            556666665553 4444433 55555566655543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.82  E-value=6.3e-20  Score=200.09  Aligned_cols=175  Identities=22%  Similarity=0.243  Sum_probs=131.8

Q ss_pred             EEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCC
Q 002432          211 AISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYS  289 (922)
Q Consensus       211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~  289 (922)
                      ..+.+++.+..+|... .++|++|++++|...   .++...|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus        35 ~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (353)
T 2z80_A           35 ICKGSSGSLNSIPSGL-TEAVKSLDLSNNRIT---YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN  110 (353)
T ss_dssp             EEECCSTTCSSCCTTC-CTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeeCCCCCcccccccc-cccCcEEECCCCcCc---ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence            3666777777777644 247888888888765   56665668888888888888888876 456888888888888888


Q ss_pred             CCCC-c-cccCCCCcCCEEEeecCCCcccch--hhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccc
Q 002432          290 TLGD-I-TIIGKLKNLEILSLIESDIVEFPE--ELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKV  365 (922)
Q Consensus       290 ~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~  365 (922)
                      .+.. + ..++++++|++|++++|+++.+|.  .+.++++|++|++++|..++.+++..++++++|++|++++|.+..  
T Consensus       111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--  188 (353)
T 2z80_A          111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--  188 (353)
T ss_dssp             CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE--
T ss_pred             cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc--
Confidence            8877 4 347888888888888888887776  578888888888888755777766557888888888888887764  


Q ss_pred             cccCCcccccccCcccCCCCCCCCEEEeeecCCCCCC
Q 002432          366 EDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALP  402 (922)
Q Consensus       366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  402 (922)
                                 ..+..++.+++|++|++++|....++
T Consensus       189 -----------~~~~~l~~l~~L~~L~l~~n~l~~~~  214 (353)
T 2z80_A          189 -----------YEPKSLKSIQNVSHLILHMKQHILLL  214 (353)
T ss_dssp             -----------ECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred             -----------cCHHHHhccccCCeecCCCCccccch
Confidence                       34566777888888888877654433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.80  E-value=1.1e-19  Score=193.95  Aligned_cols=154  Identities=16%  Similarity=0.217  Sum_probs=129.9

Q ss_pred             CCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeC-CcCc-cCchhhhccCCCCEEEccCCCCCC--ccccCCCCcCC
Q 002432          229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTN-MQLF-SLPSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLE  304 (922)
Q Consensus       229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~  304 (922)
                      .+++.|+++++.......+|..+ .++++|++|++++ |.+. .+|..++++++|++|++++|.+..  |..|.++++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            58999999999765111467654 8999999999995 8777 689999999999999999999974  78899999999


Q ss_pred             EEEeecCCCc-ccchhhcCCCCCCEEeccCCCCCC-ccCcchhCCCC-CCCEEEccCCcccccccccCCcccccccCccc
Q 002432          305 ILSLIESDIV-EFPEELGKLTKLRLLDLTNCFHLK-VIAPNVIASFT-RLEELYMSNCFVEWKVEDEGSSSKKSKASLDE  381 (922)
Q Consensus       305 ~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~-~~p~~~l~~L~-~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~  381 (922)
                      +|++++|.++ .+|..+.++++|++|++++|. +. .+|.. +++++ +|++|++++|.+.+             ..+..
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~-l~~l~~~L~~L~L~~N~l~~-------------~~~~~  193 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDS-YGSFSKLFTSMTISRNRLTG-------------KIPPT  193 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGG-GGCCCTTCCEEECCSSEEEE-------------ECCGG
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHH-HhhhhhcCcEEECcCCeeec-------------cCChH
Confidence            9999999998 788899999999999999987 55 77776 88998 99999999998875             44566


Q ss_pred             CCCCCCCCEEEeeecCCC
Q 002432          382 LMPLPRLTTLEIAVENDN  399 (922)
Q Consensus       382 l~~l~~L~~L~l~~~~~~  399 (922)
                      +..++ |+.|++++|...
T Consensus       194 ~~~l~-L~~L~Ls~N~l~  210 (313)
T 1ogq_A          194 FANLN-LAFVDLSRNMLE  210 (313)
T ss_dssp             GGGCC-CSEEECCSSEEE
T ss_pred             HhCCc-ccEEECcCCccc
Confidence            66676 999999887643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.80  E-value=1.1e-18  Score=184.07  Aligned_cols=181  Identities=25%  Similarity=0.326  Sum_probs=107.1

Q ss_pred             ccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCc-CccC-chhhhccCC
Q 002432          205 ALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQ-LFSL-PSSIDLLVN  280 (922)
Q Consensus       205 ~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~-i~~l-p~~i~~L~~  280 (922)
                      ..+++++|++++|.+..++.. + .+++|++|++++|...   .++...|.++++|++|++++|. +..+ |..+..+++
T Consensus        30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~  106 (285)
T 1ozn_A           30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA---RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR  106 (285)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred             CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc---eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence            345666666666666555532 2 5666666666666543   3433344666666666666665 5555 455666666


Q ss_pred             CCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEcc
Q 002432          281 LQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMS  357 (922)
Q Consensus       281 L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~  357 (922)
                      |++|++++|.+..  +..+.++++|++|++++|+++.+|.. ++++++|++|++++|. ++.+|...+.++++|++|+++
T Consensus       107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~  185 (285)
T 1ozn_A          107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLH  185 (285)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECC
Confidence            6666666666655  35566666666666666666655543 5666666666666653 556655446666666666666


Q ss_pred             CCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCC
Q 002432          358 NCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALP  402 (922)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  402 (922)
                      +|.+..             ..+..+..+++|+.|++++|....++
T Consensus       186 ~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~  217 (285)
T 1ozn_A          186 QNRVAH-------------VHPHAFRDLGRLMTLYLFANNLSALP  217 (285)
T ss_dssp             SSCCCE-------------ECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccc-------------cCHhHccCcccccEeeCCCCcCCcCC
Confidence            665553             23455566666666666666554433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.80  E-value=2.4e-21  Score=227.93  Aligned_cols=130  Identities=18%  Similarity=0.160  Sum_probs=73.2

Q ss_pred             CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCC-cCcc--CchhhhccCCCCEEEccCCCCCC--ccc----c
Q 002432          227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNM-QLFS--LPSSIDLLVNLQTLCLDYSTLGD--ITI----I  297 (922)
Q Consensus       227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~-~i~~--lp~~i~~L~~L~~L~L~~~~l~~--p~~----i  297 (922)
                      .+++|+.|+++++....  ..+..+...+++|++|++++| .+..  ++..+.++++|++|++++|.+..  +..    .
T Consensus       103 ~~~~L~~L~L~~~~~~~--~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTD--DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             HCTTCCEEEEESCBCCH--HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             hCCCCCeEEeeCcEEcH--HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            45667777777664321  222333225667777777766 4443  44444566777777777776543  222    2


Q ss_pred             CCCCcCCEEEeecCC--Cc--ccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCC
Q 002432          298 GKLKNLEILSLIESD--IV--EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC  359 (922)
Q Consensus       298 ~~L~~L~~L~L~~~~--l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~  359 (922)
                      ..+++|++|++++|.  +.  .++.-+.++++|++|++++|..++.++.. +.++++|++|++..+
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGY  245 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBC
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccc
Confidence            255677777777664  22  22222345677777777766545555443 566677777765544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.80  E-value=5.8e-19  Score=188.37  Aligned_cols=171  Identities=20%  Similarity=0.201  Sum_probs=93.1

Q ss_pred             EEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC---chhhhccCCCCEEEcc
Q 002432          211 AISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL---PSSIDLLVNLQTLCLD  287 (922)
Q Consensus       211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~  287 (922)
                      .++..++.+..+|... .++|+.|++++|...   .+|..+|.++++|++|++++|.+..+   |..+..+++|++|+++
T Consensus        11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             EEECCSSCCSSCCSCC-CTTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             EEEcCCCCcccCCCCC-CCCCCEEECCCCccC---ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            3444455555555432 245666666665544   45555555666666666666655533   4455556666666666


Q ss_pred             CCCCCC-ccccCCCCcCCEEEeecCCCcccch--hhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccc
Q 002432          288 YSTLGD-ITIIGKLKNLEILSLIESDIVEFPE--ELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWK  364 (922)
Q Consensus       288 ~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~  364 (922)
                      +|.+.. |..+..+++|++|++++|+++.++.  .+.++++|++|++++|. +...+...++++++|++|++++|.+.. 
T Consensus        87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-  164 (306)
T 2z66_A           87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE-  164 (306)
T ss_dssp             SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG-
T ss_pred             CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc-
Confidence            666555 4555566666666666665555542  45566666666666654 444433335556666666666655431 


Q ss_pred             ccccCCcccccccCcccCCCCCCCCEEEeeecCC
Q 002432          365 VEDEGSSSKKSKASLDELMPLPRLTTLEIAVEND  398 (922)
Q Consensus       365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  398 (922)
                                 ...+..+..+++|++|++++|..
T Consensus       165 -----------~~~~~~~~~l~~L~~L~Ls~n~l  187 (306)
T 2z66_A          165 -----------NFLPDIFTELRNLTFLDLSQCQL  187 (306)
T ss_dssp             -----------GEECSCCTTCTTCCEEECTTSCC
T ss_pred             -----------ccchhHHhhCcCCCEEECCCCCc
Confidence                       01234455555666666655543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.80  E-value=6.7e-21  Score=224.21  Aligned_cols=100  Identities=17%  Similarity=0.273  Sum_probs=53.7

Q ss_pred             cEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc-c---Cch------------hhhccCCCCEEEccCCCCCC--
Q 002432          232 ELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-S---LPS------------SIDLLVNLQTLCLDYSTLGD--  293 (922)
Q Consensus       232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~---lp~------------~i~~L~~L~~L~L~~~~l~~--  293 (922)
                      +.+++..+..    ..|..++.++++|+.|+++++... .   .|.            ....+++|++|++++|.+..  
T Consensus        46 ~~l~~~~~~~----~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~  121 (594)
T 2p1m_B           46 RKVFIGNCYA----VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDC  121 (594)
T ss_dssp             CEEEESSTTS----SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHH
T ss_pred             eEEeeccccc----cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHH
Confidence            4556554432    456677788999999999987521 1   111            12345556666666655543  


Q ss_pred             ccccC-CCCcCCEEEeecC-CCcc--cchhhcCCCCCCEEeccCCC
Q 002432          294 ITIIG-KLKNLEILSLIES-DIVE--FPEELGKLTKLRLLDLTNCF  335 (922)
Q Consensus       294 p~~i~-~L~~L~~L~L~~~-~l~~--lp~~i~~L~~L~~L~l~~~~  335 (922)
                      +..+. .+++|++|++++| .++.  ++..+.++++|++|++++|.
T Consensus       122 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          122 LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence            33333 3555555555555 3332  33333455555555555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.79  E-value=1e-18  Score=186.40  Aligned_cols=195  Identities=21%  Similarity=0.207  Sum_probs=161.6

Q ss_pred             ecCCCCCCCCCccccCcceEEEeecCCCCCCCCCC--CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc
Q 002432          192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGL--ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF  269 (922)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~  269 (922)
                      ..+.++..+|. ...+++++|++.+|.+..++...  ++++|++|++++|.....+.++..+ ..+++|++|++++|.+.
T Consensus        14 c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~   91 (306)
T 2z66_A           14 CNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVI   91 (306)
T ss_dssp             CCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEE
T ss_pred             cCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccc
Confidence            34445556655 45679999999999999998753  8999999999999765222234554 67999999999999999


Q ss_pred             cCchhhhccCCCCEEEccCCCCCC-c--cccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCc--cCcc
Q 002432          270 SLPSSIDLLVNLQTLCLDYSTLGD-I--TIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKV--IAPN  343 (922)
Q Consensus       270 ~lp~~i~~L~~L~~L~L~~~~l~~-p--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~--~p~~  343 (922)
                      .+|..+..+++|++|++++|.+.. +  ..+..+++|++|++++|.++.. |..+.++++|++|++++|. +..  +|..
T Consensus        92 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~  170 (306)
T 2z66_A           92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI  170 (306)
T ss_dssp             EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECSC
T ss_pred             cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccchhH
Confidence            999999999999999999999877 4  5799999999999999999855 5568999999999999986 554  5655


Q ss_pred             hhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCc
Q 002432          344 VIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE  403 (922)
Q Consensus       344 ~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  403 (922)
                       ++++++|++|++++|.+..             ..+..+..+++|+.|++++|....++.
T Consensus       171 -~~~l~~L~~L~Ls~n~l~~-------------~~~~~~~~l~~L~~L~L~~N~l~~~~~  216 (306)
T 2z66_A          171 -FTELRNLTFLDLSQCQLEQ-------------LSPTAFNSLSSLQVLNMSHNNFFSLDT  216 (306)
T ss_dssp             -CTTCTTCCEEECTTSCCCE-------------ECTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred             -HhhCcCCCEEECCCCCcCC-------------cCHHHhcCCCCCCEEECCCCccCccCh
Confidence             8999999999999998874             345778899999999999888665443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.79  E-value=1.8e-18  Score=195.27  Aligned_cols=174  Identities=21%  Similarity=0.251  Sum_probs=140.8

Q ss_pred             ceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEcc
Q 002432          209 CYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLD  287 (922)
Q Consensus       209 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~  287 (922)
                      .+.++..+..+..+|... .++++.|++++|.+.   .++...|.++++|++|+|++|.+..++ ..|.++++|++|+|+
T Consensus        56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQ---MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcCccCCCC-CCCccEEECcCCcCc---eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            456777777777777644 268899999988776   566666788999999999999988764 678889999999999


Q ss_pred             CCCCCC-c-cccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccc
Q 002432          288 YSTLGD-I-TIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWK  364 (922)
Q Consensus       288 ~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~  364 (922)
                      +|.+.. + ..|..+++|++|++++|+++.+|. .+.++++|++|++++|..++.++...+.++++|++|++++|.+.. 
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-  210 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-  210 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence            999887 4 568889999999999999888765 578899999999998777888888778889999999999887763 


Q ss_pred             ccccCCcccccccCcccCCCCCCCCEEEeeecCCCCC
Q 002432          365 VEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL  401 (922)
Q Consensus       365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  401 (922)
                                    +..+..+++|+.|++++|....+
T Consensus       211 --------------~~~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          211 --------------MPNLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             --------------CCCCTTCTTCCEEECTTSCCSEE
T ss_pred             --------------cccccccccccEEECcCCcCccc
Confidence                          24577888899999888876543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.79  E-value=2.3e-18  Score=193.72  Aligned_cols=174  Identities=23%  Similarity=0.330  Sum_probs=137.7

Q ss_pred             ceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEcc
Q 002432          209 CYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLD  287 (922)
Q Consensus       209 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~  287 (922)
                      .+.++..+..+..+|..+. ++++.|++++|.+.   .++...|.++++|++|+|++|.+..++ ..|.++++|++|+|+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQ---IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCC---EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCC---eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4567777777777776543 67888888888766   566666788889999999998888764 678888889999999


Q ss_pred             CCCCCC-c-cccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccc
Q 002432          288 YSTLGD-I-TIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWK  364 (922)
Q Consensus       288 ~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~  364 (922)
                      +|.++. + ..|..+++|++|++++|.++.+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.+.. 
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence            888887 4 568888899999999888887765 578888899999988777888887778888889999988887762 


Q ss_pred             ccccCCcccccccCcccCCCCCCCCEEEeeecCCCCC
Q 002432          365 VEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL  401 (922)
Q Consensus       365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  401 (922)
                                    +..+..+++|+.|++++|....+
T Consensus       200 --------------~~~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          200 --------------IPNLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             --------------CCCCTTCSSCCEEECTTSCCCEE
T ss_pred             --------------ccccCCCcccCEEECCCCccCcc
Confidence                          23577888888888887765543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.79  E-value=2.8e-18  Score=192.96  Aligned_cols=190  Identities=21%  Similarity=0.296  Sum_probs=163.3

Q ss_pred             ecCCCCCCCCCccccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc
Q 002432          192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF  269 (922)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~  269 (922)
                      ..+..+..+|. ....+++.|++++|.+..++.. + ++++|++|++++|.+.   .++...|.++++|++|+|++|.++
T Consensus        50 c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---~i~~~~~~~l~~L~~L~L~~n~l~  125 (440)
T 3zyj_A           50 CVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR---TIEIGAFNGLANLNTLELFDNRLT  125 (440)
T ss_dssp             CCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC---EECGGGGTTCSSCCEEECCSSCCS
T ss_pred             eCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC---ccChhhccCCccCCEEECCCCcCC
Confidence            44455666664 5668899999999999887643 3 8999999999999876   677777899999999999999999


Q ss_pred             cCch-hhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecC-CCcccch-hhcCCCCCCEEeccCCCCCCccCcch
Q 002432          270 SLPS-SIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIES-DIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNV  344 (922)
Q Consensus       270 ~lp~-~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~  344 (922)
                      .+|. .+..+++|++|++++|.+.. + ..|.++++|++|++++| .+..++. .+.++++|++|++++|. +..+|.  
T Consensus       126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--  202 (440)
T 3zyj_A          126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--  202 (440)
T ss_dssp             SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--
T ss_pred             eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--
Confidence            9876 69999999999999999988 4 68999999999999995 6777766 58999999999999985 889985  


Q ss_pred             hCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCC
Q 002432          345 IASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL  401 (922)
Q Consensus       345 l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  401 (922)
                      +..+++|++|++++|.+..             ..+..+..+++|+.|++++|.+..+
T Consensus       203 ~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~l~~L~~L~L~~n~l~~~  246 (440)
T 3zyj_A          203 LTPLIKLDELDLSGNHLSA-------------IRPGSFQGLMHLQKLWMIQSQIQVI  246 (440)
T ss_dssp             CTTCSSCCEEECTTSCCCE-------------ECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             cCCCcccCEEECCCCccCc-------------cChhhhccCccCCEEECCCCceeEE
Confidence            8999999999999998874             4467889999999999998876543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.78  E-value=3.5e-18  Score=192.89  Aligned_cols=190  Identities=20%  Similarity=0.254  Sum_probs=161.9

Q ss_pred             ecCCCCCCCCCccccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc
Q 002432          192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF  269 (922)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~  269 (922)
                      ..+.++..+|. ...++++.|++++|.+..++.. + ++++|+.|++++|.+.   .++...|.++++|++|+|++|.++
T Consensus        61 c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~  136 (452)
T 3zyi_A           61 CTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR---QIEVGAFNGLASLNTLELFDNWLT  136 (452)
T ss_dssp             CCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC---CcChhhccCcccCCEEECCCCcCC
Confidence            44455666654 5568999999999999877543 3 8999999999999876   677677799999999999999999


Q ss_pred             cCch-hhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecC-CCcccch-hhcCCCCCCEEeccCCCCCCccCcch
Q 002432          270 SLPS-SIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIES-DIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNV  344 (922)
Q Consensus       270 ~lp~-~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~  344 (922)
                      .+|. .++.+++|++|++++|.+.. + ..|.++++|++|++++| .+..+|. .+.++++|++|++++|. +..+|.  
T Consensus       137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--  213 (452)
T 3zyi_A          137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--  213 (452)
T ss_dssp             BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--
T ss_pred             ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--
Confidence            9875 58899999999999999988 4 68999999999999995 7777776 48999999999999986 888875  


Q ss_pred             hCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCC
Q 002432          345 IASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL  401 (922)
Q Consensus       345 l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  401 (922)
                      +..+++|++|++++|.+..             ..+..+..+++|+.|++++|....+
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~l~~L~~L~L~~n~l~~~  257 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPE-------------IRPGSFHGLSSLKKLWVMNSQVSLI  257 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSE-------------ECGGGGTTCTTCCEEECTTSCCCEE
T ss_pred             ccccccccEEECcCCcCcc-------------cCcccccCccCCCEEEeCCCcCceE
Confidence            8999999999999998875             4467889999999999998876543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.78  E-value=5e-18  Score=178.93  Aligned_cols=173  Identities=18%  Similarity=0.223  Sum_probs=147.5

Q ss_pred             eEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccC
Q 002432          210 YAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDY  288 (922)
Q Consensus       210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~  288 (922)
                      +.++..++.+..+|... .++|+.|++++|.+.   .++...|..+++|++|++++|.+..+ |..++.+++|++|++++
T Consensus        14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS---HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC---ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            67788888888887643 568999999999876   67777779999999999999999977 77899999999999999


Q ss_pred             CC-CCC--ccccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccc
Q 002432          289 ST-LGD--ITIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWK  364 (922)
Q Consensus       289 ~~-l~~--p~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~  364 (922)
                      |. +..  +..+..+++|++|++++|.++.+ |..+.++++|++|++++|. +..++...++++++|++|++++|.+.. 
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-  167 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISS-  167 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCE-
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccc-
Confidence            97 776  57899999999999999999977 5568999999999999986 888887778999999999999998773 


Q ss_pred             ccccCCcccccccCcccCCCCCCCCEEEeeecCCCC
Q 002432          365 VEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNA  400 (922)
Q Consensus       365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  400 (922)
                                  .....+..+++|+.|++++|....
T Consensus       168 ------------~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          168 ------------VPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             ------------ECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             ------------cCHHHhcCccccCEEECCCCcccc
Confidence                        223458889999999999887543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.77  E-value=2.5e-17  Score=190.31  Aligned_cols=256  Identities=19%  Similarity=0.133  Sum_probs=179.4

Q ss_pred             cceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEcc
Q 002432          208 KCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLD  287 (922)
Q Consensus       208 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~  287 (922)
                      +++.|+++++.+..+|..+. ++|+.|++++|.+.   .+|.    .+++|++|+|++|.++.+|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~---~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT---SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS---CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC---CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence            46788888888888887554 78999999988765   6765    57889999999999988887   67889999999


Q ss_pred             CCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccccc
Q 002432          288 YSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVE  366 (922)
Q Consensus       288 ~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~  366 (922)
                      +|.+.. |.   .+.+|++|++++|+++.+|..   +++|++|++++|. +..+|.    .+.+|+.|++++|.+..   
T Consensus       110 ~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~---  175 (622)
T 3g06_A          110 SNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTS---  175 (622)
T ss_dssp             SCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC---
T ss_pred             CCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCC---
Confidence            998888 55   678899999999988888864   4889999999885 777765    24678889998887762   


Q ss_pred             ccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccccccccceeEEEEccCCCCCCccccccccccccccccccccc
Q 002432          367 DEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQ  446 (922)
Q Consensus       367 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  446 (922)
                                 .+   ..+++|+.|++++|....+|...                                         
T Consensus       176 -----------l~---~~~~~L~~L~Ls~N~l~~l~~~~-----------------------------------------  200 (622)
T 3g06_A          176 -----------LP---MLPSGLQELSVSDNQLASLPTLP-----------------------------------------  200 (622)
T ss_dssp             -----------CC---CCCTTCCEEECCSSCCSCCCCCC-----------------------------------------
T ss_pred             -----------Cc---ccCCCCcEEECCCCCCCCCCCcc-----------------------------------------
Confidence                       22   44678888998888776555421                                         


Q ss_pred             cceeeEecccccchhhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCcccccCcccccc
Q 002432          447 SLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLL  526 (922)
Q Consensus       447 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L  526 (922)
                                            ++|+.|++.++.. ..++     ..+++|+.|+++++. ++.++        ..+++|
T Consensus       201 ----------------------~~L~~L~L~~N~l-~~l~-----~~~~~L~~L~Ls~N~-L~~lp--------~~l~~L  243 (622)
T 3g06_A          201 ----------------------SELYKLWAYNNRL-TSLP-----ALPSGLKELIVSGNR-LTSLP--------VLPSEL  243 (622)
T ss_dssp             ----------------------TTCCEEECCSSCC-SSCC-----CCCTTCCEEECCSSC-CSCCC--------CCCTTC
T ss_pred             ----------------------chhhEEECcCCcc-cccC-----CCCCCCCEEEccCCc-cCcCC--------CCCCcC
Confidence                                  2333333333211 1111     124566777776662 22221        345667


Q ss_pred             cccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccc
Q 002432          527 ELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKM  590 (922)
Q Consensus       527 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l  590 (922)
                      +.|+++++ .++.++.      .+++|+.|++.+| +++.++  ..+..+++|+.|++++++-.
T Consensus       244 ~~L~Ls~N-~L~~lp~------~~~~L~~L~Ls~N-~L~~lp--~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          244 KELMVSGN-RLTSLPM------LPSGLLSLSVYRN-QLTRLP--ESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCCSCC--GGGGGSCTTCEEECCSCCCC
T ss_pred             cEEECCCC-CCCcCCc------ccccCcEEeCCCC-CCCcCC--HHHhhccccCEEEecCCCCC
Confidence            77777765 3444422      4678888888887 566663  34677888999999887643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.77  E-value=2.8e-18  Score=187.06  Aligned_cols=192  Identities=18%  Similarity=0.202  Sum_probs=158.7

Q ss_pred             cCCCCCCCCCccccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCcc
Q 002432          193 RNGDVWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS  270 (922)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~  270 (922)
                      .+.++..+|. ...+++++|++++|.+..++.. + ++++|++|++++|...   .++...|.++++|++|++++|.++.
T Consensus        39 ~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~  114 (353)
T 2z80_A           39 SSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDLSYNYLSN  114 (353)
T ss_dssp             CSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCSS
T ss_pred             CCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC---ccCHhhcCCCCCCCEEECCCCcCCc
Confidence            3445556655 4567999999999999888763 3 8999999999999776   5666667999999999999999999


Q ss_pred             Cchh-hhccCCCCEEEccCCCCCC-cc--ccCCCCcCCEEEeecC-CCccc-chhhcCCCCCCEEeccCCCCCCccCcch
Q 002432          271 LPSS-IDLLVNLQTLCLDYSTLGD-IT--IIGKLKNLEILSLIES-DIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNV  344 (922)
Q Consensus       271 lp~~-i~~L~~L~~L~L~~~~l~~-p~--~i~~L~~L~~L~L~~~-~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~  344 (922)
                      +|.. ++++++|++|++++|.+.. |.  .+.++++|++|++++| .++.+ |..++++++|++|++++|. +..+++..
T Consensus       115 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~  193 (353)
T 2z80_A          115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKS  193 (353)
T ss_dssp             CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTT
T ss_pred             CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHH
Confidence            9875 8999999999999999988 54  7999999999999999 57776 4578999999999999986 77775555


Q ss_pred             hCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCC
Q 002432          345 IASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALP  402 (922)
Q Consensus       345 l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  402 (922)
                      ++++++|++|++++|.+..             .....+..+++|+.|++++|....++
T Consensus       194 l~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~~L~~L~L~~n~l~~~~  238 (353)
T 2z80_A          194 LKSIQNVSHLILHMKQHIL-------------LLEIFVDVTSSVECLELRDTDLDTFH  238 (353)
T ss_dssp             TTTCSEEEEEEEECSCSTT-------------HHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred             HhccccCCeecCCCCcccc-------------chhhhhhhcccccEEECCCCcccccc
Confidence            9999999999999998752             11122345789999999999876554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.76  E-value=1.9e-17  Score=191.24  Aligned_cols=113  Identities=19%  Similarity=0.175  Sum_probs=60.0

Q ss_pred             CccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEe
Q 002432          230 QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSL  308 (922)
Q Consensus       230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L  308 (922)
                      ++++|++++|...   .+|..++   ++|++|++++|.++.+|.   .+++|++|+|++|.++. |.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~---~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT---TLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS---CCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC---ccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence            3555555555544   4554331   455566666665555554   34555555555555555 33   4555555555


Q ss_pred             ecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432          309 IESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       309 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      ++|+++.+|.   .+.+|++|++++|. +..+|..    +++|++|++++|.+.
T Consensus       109 s~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~  154 (622)
T 3g06_A          109 FSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLA  154 (622)
T ss_dssp             CSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCS
T ss_pred             cCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCC
Confidence            5555555554   44555555555553 5555442    255555555555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.76  E-value=2.1e-17  Score=172.37  Aligned_cols=186  Identities=24%  Similarity=0.334  Sum_probs=119.2

Q ss_pred             CCCCCCCCccccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc
Q 002432          195 GDVWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP  272 (922)
Q Consensus       195 ~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp  272 (922)
                      ..+..+|. ....++++|++++|.+..++.. + ++++|++|++++|...   .++..+|.++++|++|++++|.+..+|
T Consensus        26 ~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~i~~~~~~~l~~L~~L~l~~n~l~~~~  101 (270)
T 2o6q_A           26 KKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWVTDNKLQALP  101 (270)
T ss_dssp             SCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS---CCCTTTTSSCTTCCEEECCSSCCCCCC
T ss_pred             CCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC---eeChhhhcCCCCCCEEECCCCcCCcCC
Confidence            33444433 3345667777777777666542 2 6677777777776655   566666666777777777777777665


Q ss_pred             h-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCC
Q 002432          273 S-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASF  348 (922)
Q Consensus       273 ~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L  348 (922)
                      . .+..+++|++|++++|.+..  +..|..+++|++|++++|.++.+|.. +.++++|++|++++|. +..++...+.++
T Consensus       102 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l  180 (270)
T 2o6q_A          102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKL  180 (270)
T ss_dssp             TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred             HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccC
Confidence            3 45667777777777777665  34566777777777777777766554 5667777777777764 666666556667


Q ss_pred             CCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCC
Q 002432          349 TRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEND  398 (922)
Q Consensus       349 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  398 (922)
                      ++|++|++++|.+..             .....+..+++|+.|++++|..
T Consensus       181 ~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          181 TELKTLKLDNNQLKR-------------VPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTCCEEECCSSCCSC-------------CCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCcCEEECCCCcCCc-------------CCHHHhccccCCCEEEecCCCe
Confidence            777777777776652             2223456666777777776653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.75  E-value=2e-17  Score=173.97  Aligned_cols=181  Identities=22%  Similarity=0.245  Sum_probs=154.4

Q ss_pred             cCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEE
Q 002432          206 LKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLC  285 (922)
Q Consensus       206 ~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~  285 (922)
                      ..+++.+++.++.+..+|..+. ++++.|++++|.+.   .++...|.++++|++|++++|.++.+|.. +.+++|++|+
T Consensus         9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~   83 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLY---TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD   83 (290)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCS---EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred             cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCC---ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence            4578889999999988887653 68999999999876   56666679999999999999999988764 7899999999


Q ss_pred             ccCCCCCC-ccccCCCCcCCEEEeecCCCcccc-hhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccc
Q 002432          286 LDYSTLGD-ITIIGKLKNLEILSLIESDIVEFP-EELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEW  363 (922)
Q Consensus       286 L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~  363 (922)
                      +++|.+.. |..+..+++|++|++++|+++.+| ..|.++++|++|++++|. +..+|.+.+..+++|++|++++|.+..
T Consensus        84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G           84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCc
Confidence            99999988 888899999999999999999887 458999999999999986 888888878899999999999998873


Q ss_pred             cccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccc
Q 002432          364 KVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGF  405 (922)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  405 (922)
                                   .....+..+++|+.|++++|....+|..+
T Consensus       163 -------------l~~~~~~~l~~L~~L~L~~N~l~~ip~~~  191 (290)
T 1p9a_G          163 -------------LPAGLLNGLENLDTLLLQENSLYTIPKGF  191 (290)
T ss_dssp             -------------CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             -------------cCHHHhcCcCCCCEEECCCCcCCccChhh
Confidence                         22345678899999999999988888764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.75  E-value=3.6e-17  Score=170.64  Aligned_cols=190  Identities=24%  Similarity=0.336  Sum_probs=161.0

Q ss_pred             CcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchh-hhccCCCCEEE
Q 002432          207 KKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSS-IDLLVNLQTLC  285 (922)
Q Consensus       207 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~  285 (922)
                      ...+.++++++.+..+|.... ++++.|++++|...   .++...|.++++|++|++++|.++.+|.. +.++++|++|+
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS---SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS---CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred             CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC---eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence            356789999999988887553 68999999999876   67777779999999999999999999765 58899999999


Q ss_pred             ccCCCCCC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432          286 LDYSTLGD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       286 L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      +++|.+.. + ..+..+++|++|++++|.++.+|.. +.++++|++|++++|. +..+|...++.+++|++|++++|.+.
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCc
Confidence            99999988 4 6789999999999999999988654 7999999999999986 88998877899999999999999887


Q ss_pred             ccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccc--cccccceeE
Q 002432          363 WKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGF--FVRELERFK  414 (922)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~  414 (922)
                      .             .....+..+++|+.|++++|....++...  .+++|+.+.
T Consensus       171 ~-------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  211 (270)
T 2o6q_A          171 R-------------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ  211 (270)
T ss_dssp             C-------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             E-------------eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEE
Confidence            4             33356888999999999999988777652  344444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.75  E-value=2.3e-20  Score=212.14  Aligned_cols=158  Identities=20%  Similarity=0.266  Sum_probs=100.2

Q ss_pred             CCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc-----cCchhhhccCCCCEEEccCCCCCC--cccc-CCC
Q 002432          229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-----SLPSSIDLLVNLQTLCLDYSTLGD--ITII-GKL  300 (922)
Q Consensus       229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~--p~~i-~~L  300 (922)
                      ++|++|+++++....  .-...+|..+++|++|++++|.+.     .+|..+..+++|++|++++|.+..  +..+ ..+
T Consensus         3 ~~l~~L~Ls~~~l~~--~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            3 LDIQSLDIQCEELSD--ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             EEEEEEEEESCCCCH--HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             ccceehhhhhcccCc--hhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            356667776665431  122334577788888888888776     456677777888888888888765  3222 234


Q ss_pred             C----cCCEEEeecCCCc-----ccchhhcCCCCCCEEeccCCCCCCccCcchh-----CCCCCCCEEEccCCccccccc
Q 002432          301 K----NLEILSLIESDIV-----EFPEELGKLTKLRLLDLTNCFHLKVIAPNVI-----ASFTRLEELYMSNCFVEWKVE  366 (922)
Q Consensus       301 ~----~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l-----~~L~~L~~L~L~~~~~~~~~~  366 (922)
                      .    +|++|++++|+++     .+|..+.++++|++|++++|. ++......+     ...++|++|++++|.+...  
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--  157 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA--  157 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG--
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHH--
Confidence            4    6888888888777     456777888888888888875 543221112     2356788888888876530  


Q ss_pred             ccCCcccccccCcccCCCCCCCCEEEeeecCC
Q 002432          367 DEGSSSKKSKASLDELMPLPRLTTLEIAVEND  398 (922)
Q Consensus       367 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  398 (922)
                             ........+..+++|++|++++|..
T Consensus       158 -------~~~~l~~~l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          158 -------SCEPLASVLRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             -------GHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             -------HHHHHHHHHhhCCCCCEEECcCCCc
Confidence                   0011234455567788888776653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.74  E-value=2e-19  Score=192.57  Aligned_cols=132  Identities=14%  Similarity=0.133  Sum_probs=75.6

Q ss_pred             CChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCC
Q 002432          247 IPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTK  325 (922)
Q Consensus       247 l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~  325 (922)
                      .+..++..+++|++|++++|.++.++ ..+.++++|++|++++|.+.....+..+++|++|++++|+++.+|.    .++
T Consensus        25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~~  100 (317)
T 3o53_A           25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPS  100 (317)
T ss_dssp             HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE----CTT
T ss_pred             hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC----CCC
Confidence            33444555566666666666666553 4566666666666666666552226666666666666666655542    356


Q ss_pred             CCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432          326 LRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN  399 (922)
Q Consensus       326 L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  399 (922)
                      |++|++++|. +..++..   .+++|++|++++|.+..             .....++.+++|+.|++++|...
T Consensus       101 L~~L~l~~n~-l~~~~~~---~~~~L~~L~l~~N~l~~-------------~~~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A          101 IETLHAANNN-ISRVSCS---RGQGKKNIYLANNKITM-------------LRDLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             CCEEECCSSC-CSEEEEC---CCSSCEEEECCSSCCCS-------------GGGBCTGGGSSEEEEECTTSCCC
T ss_pred             cCEEECCCCc-cCCcCcc---ccCCCCEEECCCCCCCC-------------ccchhhhccCCCCEEECCCCCCC
Confidence            6666666654 5555433   35566666666665553             22234555566666666655543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.73  E-value=2.8e-17  Score=168.09  Aligned_cols=196  Identities=15%  Similarity=0.223  Sum_probs=165.5

Q ss_pred             CCCCCCccccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCC-CcCCCCCChHHhhCCCCCcEEEeeC-CcCccCc
Q 002432          197 VWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEH-SSVDVNIPQRFFTGMRELKVVDLTN-MQLFSLP  272 (922)
Q Consensus       197 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~-~~~~~~l~~~~~~~l~~Lr~L~L~~-~~i~~lp  272 (922)
                      +..+|.  ...+++.|++.+|.+..++.. + .+++|++|++++|. ..   .++...|.++++|++|++++ |.++.+|
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~---~i~~~~f~~l~~L~~L~l~~~n~l~~i~   97 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ---QLESHSFYNLSKVTHIEIRNTRNLTYID   97 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC---EECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc---eeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence            555665  677999999999999888873 3 89999999999996 55   67877789999999999999 9999886


Q ss_pred             -hhhhccCCCCEEEccCCCCCC-ccccCCCCcCC---EEEeecC-CCcccchh-hcCCCCCC-EEeccCCCCCCccCcch
Q 002432          273 -SSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLE---ILSLIES-DIVEFPEE-LGKLTKLR-LLDLTNCFHLKVIAPNV  344 (922)
Q Consensus       273 -~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~---~L~L~~~-~l~~lp~~-i~~L~~L~-~L~l~~~~~l~~~p~~~  344 (922)
                       ..+.++++|++|++++|.+.. |. +..+++|+   +|++++| +++.+|.. +.++++|+ +|++++|. +..+|...
T Consensus        98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~  175 (239)
T 2xwt_C           98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYA  175 (239)
T ss_dssp             TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTT
T ss_pred             HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhh
Confidence             578999999999999999998 55 88899998   9999999 99988765 89999999 99999986 88999875


Q ss_pred             hCCCCCCCEEEccCCc-ccccccccCCcccccccCcccCCCC-CCCCEEEeeecCCCCCCccccccccceeE
Q 002432          345 IASFTRLEELYMSNCF-VEWKVEDEGSSSKKSKASLDELMPL-PRLTTLEIAVENDNALPEGFFVRELERFK  414 (922)
Q Consensus       345 l~~L~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~l~  414 (922)
                      +.. ++|++|++++|. +..             .....+..+ ++|+.|++++|....+|.. .+.+|+.|.
T Consensus       176 ~~~-~~L~~L~L~~n~~l~~-------------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~  232 (239)
T 2xwt_C          176 FNG-TKLDAVYLNKNKYLTV-------------IDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELI  232 (239)
T ss_dssp             TTT-CEEEEEECTTCTTCCE-------------ECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEE
T ss_pred             cCC-CCCCEEEcCCCCCccc-------------CCHHHhhccccCCcEEECCCCccccCChh-HhccCceee
Confidence            555 899999999995 763             234567888 9999999999998888876 555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=8.2e-17  Score=165.89  Aligned_cols=175  Identities=23%  Similarity=0.291  Sum_probs=151.3

Q ss_pred             cceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEc
Q 002432          208 KCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCL  286 (922)
Q Consensus       208 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L  286 (922)
                      ..+++++.++.+..+|.... ++++.|++++|...   .++...|.++++|++|++++|.++.++ ..+..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLA---TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCC---CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcC---ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            45678899999988887654 68999999999876   666666799999999999999999875 46899999999999


Q ss_pred             cCCCCCC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccc
Q 002432          287 DYSTLGD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEW  363 (922)
Q Consensus       287 ~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~  363 (922)
                      ++|.+.. + ..|..+++|++|++++|+++.+|.. +.++++|++|++++|. +..+|...++++++|++|++++|.+..
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            9999988 4 6789999999999999999988776 6899999999999985 889988769999999999999998874


Q ss_pred             cccccCCcccccccCcccCCCCCCCCEEEeeecCCCC
Q 002432          364 KVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNA  400 (922)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  400 (922)
                                   .....+..+++|+.|++++|....
T Consensus       170 -------------~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          170 -------------VPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             -------------CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             -------------cCHHHHhCCCCCCEEEeeCCceeC
Confidence                         334578889999999999998654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.72  E-value=4.8e-17  Score=170.51  Aligned_cols=201  Identities=21%  Similarity=0.244  Sum_probs=162.0

Q ss_pred             CCCCCCCCccccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc
Q 002432          195 GDVWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP  272 (922)
Q Consensus       195 ~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp  272 (922)
                      ..+..+|. ...+++++|++++|.+..++.. + ++++|++|++++|...   .++...|.++++|++|++++|.+..++
T Consensus        17 ~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~   92 (276)
T 2z62_A           17 LNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLA   92 (276)
T ss_dssp             SCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             CCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC---ccCHHHccCCcCCCEEECCCCccCccC
Confidence            34444554 4567899999999999888753 3 8999999999999776   677767799999999999999999775


Q ss_pred             -hhhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCCCcc--cchhhcCCCCCCEEeccCCCCCCccCcchhCC
Q 002432          273 -SSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIVE--FPEELGKLTKLRLLDLTNCFHLKVIAPNVIAS  347 (922)
Q Consensus       273 -~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~  347 (922)
                       ..+.++++|++|++++|.+.. + ..++++++|++|++++|.++.  +|..++++++|++|++++|. +..++...+..
T Consensus        93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~  171 (276)
T 2z62_A           93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRV  171 (276)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHH
T ss_pred             hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhh
Confidence             679999999999999999987 3 579999999999999999986  68899999999999999986 88887665777


Q ss_pred             CCCCC----EEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccc--cccccceeE
Q 002432          348 FTRLE----ELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGF--FVRELERFK  414 (922)
Q Consensus       348 L~~L~----~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~  414 (922)
                      +++|+    +|++++|.+..              .+.......+|+.|++++|....+|...  .+++|+.+.
T Consensus       172 l~~L~~l~l~L~ls~n~l~~--------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  230 (276)
T 2z62_A          172 LHQMPLLNLSLDLSLNPMNF--------------IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW  230 (276)
T ss_dssp             HHTCTTCCEEEECCSSCCCE--------------ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEE
T ss_pred             hhhccccceeeecCCCcccc--------------cCccccCCCcccEEECCCCceeecCHhHhcccccccEEE
Confidence            77776    89999998873              2233333448999999999988877653  344444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.72  E-value=8.7e-17  Score=170.90  Aligned_cols=187  Identities=19%  Similarity=0.240  Sum_probs=144.5

Q ss_pred             ccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEE
Q 002432          205 ALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTL  284 (922)
Q Consensus       205 ~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L  284 (922)
                      ..+++++|++.++.+..++....+++|++|++++|...   .++.  |..+++|++|++++|.+..+| .+..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~---~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L  112 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT---DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL  112 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred             HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC---CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence            35678888888888877776557888888888888765   5555  588888888888888888776 58888888888


Q ss_pred             EccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccc
Q 002432          285 CLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWK  364 (922)
Q Consensus       285 ~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~  364 (922)
                      ++++|.+.....+..+++|++|++++|.++.++. ++++++|++|++++|. +..++.  ++++++|++|++++|.+.. 
T Consensus       113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~-  187 (308)
T 1h6u_A          113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKISD-  187 (308)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCC-
T ss_pred             ECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccCc-
Confidence            8888888874458888888888888888887765 8888888888888875 777765  7888888888888887763 


Q ss_pred             ccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccccccccceeEEE
Q 002432          365 VEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKIL  416 (922)
Q Consensus       365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~  416 (922)
                                    +..+..+++|+.|++++|....++....+++|+.+.+.
T Consensus       188 --------------~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~  225 (308)
T 1h6u_A          188 --------------ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT  225 (308)
T ss_dssp             --------------CGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred             --------------ChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEcc
Confidence                          22367788888888888887766643355666665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.72  E-value=4.8e-17  Score=170.52  Aligned_cols=175  Identities=20%  Similarity=0.304  Sum_probs=124.3

Q ss_pred             EEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEccCCC
Q 002432          212 ISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYST  290 (922)
Q Consensus       212 L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~  290 (922)
                      ++..+..+..+|.... ++|++|++++|...   .++...|.++++|++|++++|.+..++. .+.++++|++|++++|.
T Consensus        12 ~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           12 YQCMELNFYKIPDNLP-FSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EECTTSCCSSCCSSSC-TTCCEEECTTCCCC---EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEecCCCccccCCCCC-CCccEEECCCCccc---ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            3444455566666442 57888888888765   5666566888888888888888887654 68888888888888888


Q ss_pred             CCC--ccccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCc--cCcchhCCCCCCCEEEccCCcccccc
Q 002432          291 LGD--ITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKV--IAPNVIASFTRLEELYMSNCFVEWKV  365 (922)
Q Consensus       291 l~~--p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~~l~~L~~L~~L~L~~~~~~~~~  365 (922)
                      +..  +..|.++++|++|++++|.++.++. .++++++|++|++++|. +..  +|.. ++++++|++|++++|.+..  
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~--  163 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS--  163 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCE--
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCc--
Confidence            877  4678888888888888888887765 57888888888888875 655  4554 8888888888888887763  


Q ss_pred             cccCCcccccccCcccCCCCCCCC-EEEeeecCCCCCC
Q 002432          366 EDEGSSSKKSKASLDELMPLPRLT-TLEIAVENDNALP  402 (922)
Q Consensus       366 ~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~  402 (922)
                       ++       ...+..+..++.|. .|++++|....++
T Consensus       164 -~~-------~~~~~~l~~L~~l~l~L~ls~n~l~~~~  193 (276)
T 2z62_A          164 -IY-------CTDLRVLHQMPLLNLSLDLSLNPMNFIQ  193 (276)
T ss_dssp             -EC-------GGGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred             -CC-------HHHhhhhhhccccceeeecCCCcccccC
Confidence             10       01222333333333 6777777655433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.71  E-value=1e-16  Score=168.54  Aligned_cols=186  Identities=18%  Similarity=0.160  Sum_probs=160.0

Q ss_pred             cCCCCCCCCCccccCcceEEEeecCCCCCCCCC--CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCcc
Q 002432          193 RNGDVWEWPDEDALKKCYAISWIDSSGGELPEG--LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS  270 (922)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~  270 (922)
                      .+.++..+|. ...++++.|++++|.+..++..  ..+++|+.|++++|.+.   .++..  ..+++|++|++++|.+..
T Consensus        18 ~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~--~~l~~L~~L~Ls~N~l~~   91 (290)
T 1p9a_G           18 DKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVD--GTLPVLGTLDLSHNQLQS   91 (290)
T ss_dssp             TTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC---EEECC--SCCTTCCEEECCSSCCSS
T ss_pred             CCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC---cccCC--CCCCcCCEEECCCCcCCc
Confidence            3445555554 4567899999999999777543  38999999999999876   45442  789999999999999999


Q ss_pred             CchhhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCC
Q 002432          271 LPSSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIAS  347 (922)
Q Consensus       271 lp~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~  347 (922)
                      +|..+..+++|++|++++|.++. | ..|.++++|++|++++|+++.+|.+ +..+++|++|++++|. ++.+|.+.+.+
T Consensus        92 l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~  170 (290)
T 1p9a_G           92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNG  170 (290)
T ss_dssp             CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTT
T ss_pred             CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcC
Confidence            99999999999999999999998 4 7899999999999999999988766 6899999999999986 89999887899


Q ss_pred             CCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432          348 FTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN  399 (922)
Q Consensus       348 L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  399 (922)
                      +++|++|++++|.+.              ..+..+....+|+.|++++|...
T Consensus       171 l~~L~~L~L~~N~l~--------------~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          171 LENLDTLLLQENSLY--------------TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CTTCCEEECCSSCCC--------------CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCCCCEEECCCCcCC--------------ccChhhcccccCCeEEeCCCCcc
Confidence            999999999999887              45667777889999999998754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.71  E-value=5.5e-18  Score=181.34  Aligned_cols=143  Identities=18%  Similarity=0.199  Sum_probs=74.0

Q ss_pred             cceEEEeecCCCCCCCCC--CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEE
Q 002432          208 KCYAISWIDSSGGELPEG--LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLC  285 (922)
Q Consensus       208 ~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~  285 (922)
                      ++++|++++|.+..+++.  ..+++|++|++++|...   .+++  |..+++|++|++++|.++.+|.    .++|++|+
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~  105 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY---ETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH  105 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCE---EEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCC---cchh--hhhcCCCCEEECcCCccccccC----CCCcCEEE
Confidence            455566666655554421  15555666666555443   2222  3555566666666665554432    25556666


Q ss_pred             ccCCCCCC-ccccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCccCcchh-CCCCCCCEEEccCCccc
Q 002432          286 LDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNVI-ASFTRLEELYMSNCFVE  362 (922)
Q Consensus       286 L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l-~~L~~L~~L~L~~~~~~  362 (922)
                      +++|.+.. +..  .+++|++|++++|+++.++. .++.+++|++|++++|. +..++...+ ..+++|++|++++|.+.
T Consensus       106 l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             CCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCc
Confidence            66655554 221  24555666666665554433 45555566666666553 444433223 24555666666655554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.71  E-value=2.4e-19  Score=203.76  Aligned_cols=180  Identities=17%  Similarity=0.136  Sum_probs=124.5

Q ss_pred             cCcceEEEeecCCCCCCCCC--C-CCCCccEEEccCCCCcCC--CCCChHHhhCCCCCcEEEeeCCcCccC-chhh-hcc
Q 002432          206 LKKCYAISWIDSSGGELPEG--L-ECPQLELLLLSSEHSSVD--VNIPQRFFTGMRELKVVDLTNMQLFSL-PSSI-DLL  278 (922)
Q Consensus       206 ~~~l~~L~l~~~~~~~l~~~--~-~~~~Lr~L~l~~~~~~~~--~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i-~~L  278 (922)
                      ++++++|+++++.+...+..  + .+++|++|++++|.....  ..++ ..+..+++|++|++++|.+... +..+ ..+
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            35688899998887544321  2 678899999998864310  0122 3457889999999999988742 3333 335


Q ss_pred             C----CCCEEEccCCCCCC------ccccCCCCcCCEEEeecCCCccc-chhh-----cCCCCCCEEeccCCCCCCccC-
Q 002432          279 V----NLQTLCLDYSTLGD------ITIIGKLKNLEILSLIESDIVEF-PEEL-----GKLTKLRLLDLTNCFHLKVIA-  341 (922)
Q Consensus       279 ~----~L~~L~L~~~~l~~------p~~i~~L~~L~~L~L~~~~l~~l-p~~i-----~~L~~L~~L~l~~~~~l~~~p-  341 (922)
                      .    +|++|++++|.+..      +..+.++++|++|++++|.++.. +..+     ....+|++|++++|. ++... 
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~  159 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASC  159 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGH
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHH
Confidence            5    69999999999873      57788999999999999987732 2222     236689999999985 55432 


Q ss_pred             ---cchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCC-----CCCCCCEEEeeecCCCC
Q 002432          342 ---PNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELM-----PLPRLTTLEIAVENDNA  400 (922)
Q Consensus       342 ---~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~  400 (922)
                         ...+..+++|++|++++|.+..             ..+..+.     ..++|++|+++++....
T Consensus       160 ~~l~~~l~~~~~L~~L~L~~n~i~~-------------~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  213 (461)
T 1z7x_W          160 EPLASVLRAKPDFKELTVSNNDINE-------------AGVRVLCQGLKDSPCQLEALKLESCGVTS  213 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHH-------------HHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             HHHHHHHhhCCCCCEEECcCCCcch-------------HHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence               1236778999999999988653             1112221     35689999999887654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.70  E-value=2.3e-16  Score=164.59  Aligned_cols=177  Identities=24%  Similarity=0.263  Sum_probs=152.7

Q ss_pred             cccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCC
Q 002432          204 DALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQ  282 (922)
Q Consensus       204 ~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~  282 (922)
                      ...++++.|.+.++.+..++....+++|++|++++|...   .++  .+..+++|++|++++|.++.+|. .++++++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~---~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH---DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCC---CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCC---Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            446789999999999988887668999999999999865   443  35899999999999999998865 579999999


Q ss_pred             EEEccCCCCCC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCC
Q 002432          283 TLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC  359 (922)
Q Consensus       283 ~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~  359 (922)
                      +|++++|.+.. + ..++.+++|++|++++|+++.+|.. ++++++|++|++++|. +..++...++++++|++|++++|
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCC
Confidence            99999999988 4 5689999999999999999988765 6899999999999986 88888876899999999999999


Q ss_pred             cccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432          360 FVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN  399 (922)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  399 (922)
                      .+..             .....++.+++|+.|++++|...
T Consensus       192 ~l~~-------------~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          192 QLKS-------------VPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             CCSC-------------CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCc-------------cCHHHHhCCcCCCEEEccCCCcc
Confidence            8874             33455788999999999998744

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.70  E-value=6.8e-17  Score=207.40  Aligned_cols=169  Identities=18%  Similarity=0.253  Sum_probs=135.8

Q ss_pred             CCcceEeCCC-CCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHHHHHHHhcCCCC
Q 002432            2 GSEANFSIEI-LNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTE   80 (922)
Q Consensus         2 ~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~~~l~~~~~~~~   80 (922)
                      +...+|++++ |+++|||+||+++++.  ..+++++++++|+++|+|+||||+++|+.|+.++  ..|+++++.+.....
T Consensus       275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~--~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~  350 (1249)
T 3sfz_A          275 GPKHVVPVESGLGREKGLEILSLFVNM--KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQF  350 (1249)
T ss_dssp             SCBCCEECCSSCCHHHHHHHHHHHHTS--CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCC
T ss_pred             CCceEEEecCCCCHHHHHHHHHHhhCC--ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhh
Confidence            4567899996 9999999999999943  2345677899999999999999999999999884  469999888852221


Q ss_pred             -C---CCccchHHHHHHHHHHHhcCCchhHHHHHhhcccc-CCCchhH-HHHHHHHhcCCcccccHHHHHHHHHHHHHHH
Q 002432           81 -N---NFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLM-PKSFFAS-DLFKYCIGLGIFRGIDMEDARNKLYTLVHEL  154 (922)
Q Consensus        81 -~---~~~~~~~~~~~~l~lsY~~L~~~~lk~cfly~~~f-~~~~~~~-~Li~~WiaeG~i~~~~~e~~~~~~~~~i~~L  154 (922)
                       .   ....+.+.+..++.+||+.||++ .|.||+|||+| +++.|++ .++.+|.+++       +++    .+++++|
T Consensus       351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~-------~~~----~~~l~~L  418 (1249)
T 3sfz_A          351 KRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET-------EEV----EDILQEF  418 (1249)
T ss_dssp             CCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH-------HHH----HHHHHHH
T ss_pred             hhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH-------HHH----HHHHHHH
Confidence             0   11112345999999999999999 79999999999 7899998 9999997762       333    4569999


Q ss_pred             Hhhcceecccc--cceEEecHHHHHHHHHHHccc
Q 002432          155 KDSCLLLEGYS--CREFSMHDVVHDVAILIACGE  186 (922)
Q Consensus       155 ~~~~l~~~~~~--~~~~~mhdli~dl~~~~~~~e  186 (922)
                      +++||++....  ...|+|||+||+++...+.+|
T Consensus       419 ~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          419 VNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             HHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             HhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            99999986532  235999999999999987665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.69  E-value=4.6e-16  Score=165.31  Aligned_cols=188  Identities=22%  Similarity=0.271  Sum_probs=161.4

Q ss_pred             ecCCCCCCCCCccccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC
Q 002432          192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL  271 (922)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l  271 (922)
                      ..+..+..++.....++++.|++++|.+..++....+++|++|++++|...   .++  .|..+++|++|++++|.++.+
T Consensus        48 l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~---~~~--~~~~l~~L~~L~l~~n~l~~~  122 (308)
T 1h6u_A           48 AFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK---NVS--AIAGLQSIKTLDLTSTQITDV  122 (308)
T ss_dssp             CTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS---CCG--GGTTCTTCCEEECTTSCCCCC
T ss_pred             eeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCC---Cch--hhcCCCCCCEEECCCCCCCCc
Confidence            344445555555667899999999999988888559999999999999865   454  268999999999999999998


Q ss_pred             chhhhccCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCC
Q 002432          272 PSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRL  351 (922)
Q Consensus       272 p~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L  351 (922)
                      |. +..+++|++|++++|.+.....++.+++|++|++++|+++.++. +.++++|++|++++|. +..++.  +..+++|
T Consensus       123 ~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L  197 (308)
T 1h6u_A          123 TP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPNL  197 (308)
T ss_dssp             GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTC
T ss_pred             hh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCCC
Confidence            76 99999999999999999985449999999999999999998876 9999999999999986 888876  8899999


Q ss_pred             CEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCcc
Q 002432          352 EELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEG  404 (922)
Q Consensus       352 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  404 (922)
                      ++|++++|.+..              . ..+..+++|+.|++++|.....|..
T Consensus       198 ~~L~L~~N~l~~--------------~-~~l~~l~~L~~L~l~~N~i~~~~~~  235 (308)
T 1h6u_A          198 IEVHLKNNQISD--------------V-SPLANTSNLFIVTLTNQTITNQPVF  235 (308)
T ss_dssp             CEEECTTSCCCB--------------C-GGGTTCTTCCEEEEEEEEEECCCEE
T ss_pred             CEEEccCCccCc--------------c-ccccCCCCCCEEEccCCeeecCCee
Confidence            999999998873              2 2488999999999999987665543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=1.9e-16  Score=166.67  Aligned_cols=175  Identities=26%  Similarity=0.317  Sum_probs=154.0

Q ss_pred             cccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCE
Q 002432          204 DALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQT  283 (922)
Q Consensus       204 ~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~  283 (922)
                      ...++++.|++.+|.+..++....+++|++|++++|...   .++.  +.++++|++|++++|.+..+|. ++.+++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~---~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT---DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccC---CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence            346789999999999988887668999999999999876   5655  6999999999999999998765 999999999


Q ss_pred             EEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccc
Q 002432          284 LCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEW  363 (922)
Q Consensus       284 L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~  363 (922)
                      |++++|.+..++.+..+++|++|++++|+++.+ ..+.++++|++|++++|. +..+++  ++.+++|++|++++|.+..
T Consensus       117 L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             EECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCCC
Confidence            999999999977899999999999999999988 579999999999999986 888876  8999999999999998863


Q ss_pred             cccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCc
Q 002432          364 KVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE  403 (922)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  403 (922)
                                     +..+..+++|+.|++++|.....|.
T Consensus       193 ---------------l~~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          193 ---------------LRALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             ---------------CGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred             ---------------ChhhccCCCCCEEECcCCcccCCcc
Confidence                           3458899999999999998655443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.69  E-value=1.4e-16  Score=162.94  Aligned_cols=139  Identities=19%  Similarity=0.240  Sum_probs=105.6

Q ss_pred             CCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCc-CccCch-hhhccCCCCEEEccC-CCCCC-
Q 002432          218 SGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQ-LFSLPS-SIDLLVNLQTLCLDY-STLGD-  293 (922)
Q Consensus       218 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~-i~~lp~-~i~~L~~L~~L~L~~-~~l~~-  293 (922)
                      .+..+|.  -..+|+.|++++|...   .++...|.++++|++|++++|. ++.+|. .+.++++|++|++++ |.++. 
T Consensus        22 ~l~~ip~--~~~~l~~L~l~~n~l~---~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i   96 (239)
T 2xwt_C           22 DIQRIPS--LPPSTQTLKLIETHLR---TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI   96 (239)
T ss_dssp             SCSSCCC--CCTTCCEEEEESCCCS---EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred             CccccCC--CCCcccEEEEeCCcce---EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence            3666666  2347888888888765   6676667888888888888886 777764 677888888888887 77776 


Q ss_pred             c-cccCCCCcCCEEEeecCCCcccchhhcCCCCCC---EEeccCCCCCCccCcchhCCCCCCC-EEEccCCccc
Q 002432          294 I-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLR---LLDLTNCFHLKVIAPNVIASFTRLE-ELYMSNCFVE  362 (922)
Q Consensus       294 p-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~---~L~l~~~~~l~~~p~~~l~~L~~L~-~L~L~~~~~~  362 (922)
                      + ..|.++++|++|++++|+++.+|. +.++++|+   +|++++|..++.+|...+.++++|+ +|++++|.+.
T Consensus        97 ~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C           97 DPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             CTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             CHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence            3 567788888888888888888776 77777777   8888887347777776677888888 8888877665

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.68  E-value=6.4e-17  Score=187.62  Aligned_cols=142  Identities=18%  Similarity=0.233  Sum_probs=116.5

Q ss_pred             eEeCC------CCCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCC-CHHHHHHHHHHhcCC
Q 002432            6 NFSIE------ILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKT-ESECWKNALHELRMP   78 (922)
Q Consensus         6 ~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~-~~~~W~~~l~~~~~~   78 (922)
                      +|+++      +|+++|||+||+++.+..     ..++..+|   |+|+||||+++|+.|+.+. +.++|+.+       
T Consensus       286 vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------  350 (1221)
T 1vt4_I          286 TTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-------  350 (1221)
T ss_dssp             SCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------
T ss_pred             EEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------
Confidence            57777      999999999999997442     22344444   9999999999999999885 67888753       


Q ss_pred             CCCCCccchHHHHHHHHHHHhcCCchhH-HHHHhhcccc-CCCchhH-HHHHHHHhcCCcccccHHHHHHHHHHHHHHHH
Q 002432           79 TENNFHRELGKAYTAIKLSYDALKGEQL-KKIFQLCSLM-PKSFFAS-DLFKYCIGLGIFRGIDMEDARNKLYTLVHELK  155 (922)
Q Consensus        79 ~~~~~~~~~~~~~~~l~lsY~~L~~~~l-k~cfly~~~f-~~~~~~~-~Li~~WiaeG~i~~~~~e~~~~~~~~~i~~L~  155 (922)
                             ..+.+..+|.+||+.||++ . |.||+|||+| +++.|.+ .++.+|+++|      .++    +.++|++|+
T Consensus       351 -------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeG------eed----Ae~~L~eLv  412 (1221)
T 1vt4_I          351 -------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSD----VMVVVNKLH  412 (1221)
T ss_dssp             -------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHH----HHHHHHHHH
T ss_pred             -------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHH----HHHHHHHHH
Confidence                   1245999999999999998 8 9999999999 6899988 8999999998      123    344699999


Q ss_pred             hhcceecccccceEEecHHHHHHHH
Q 002432          156 DSCLLLEGYSCREFSMHDVVHDVAI  180 (922)
Q Consensus       156 ~~~l~~~~~~~~~~~mhdli~dl~~  180 (922)
                      ++||++..+....|+|||++++++.
T Consensus       413 dRSLLq~d~~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          413 KYSLVEKQPKESTISIPSIYLELKV  437 (1221)
T ss_dssp             TSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred             hhCCEEEeCCCCEEEehHHHHHHhc
Confidence            9999997655678999999999763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.68  E-value=2.7e-16  Score=167.80  Aligned_cols=162  Identities=17%  Similarity=0.206  Sum_probs=114.4

Q ss_pred             CCCCccEEEccCCCCcCCCCCChHHh-hCCCCCcEEEeeCCcCccCchhhhcc-----CCCCEEEccCCCCCC--ccccC
Q 002432          227 ECPQLELLLLSSEHSSVDVNIPQRFF-TGMRELKVVDLTNMQLFSLPSSIDLL-----VNLQTLCLDYSTLGD--ITIIG  298 (922)
Q Consensus       227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~-~~l~~Lr~L~L~~~~i~~lp~~i~~L-----~~L~~L~L~~~~l~~--p~~i~  298 (922)
                      ++++|++|++++|....  .+|..+| ..+++|++|++++|.+..+|..++.+     ++|++|++++|.+..  +..|+
T Consensus        93 ~l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~  170 (312)
T 1wwl_A           93 GISGLQELTLENLEVTG--TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR  170 (312)
T ss_dssp             TTSCCCEEEEEEEBCBS--CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred             CcCCccEEEccCCcccc--hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence            36778888888776542  5666543 77888888888888888777777776     788888888888776  37788


Q ss_pred             CCCcCCEEEeecCCCcc---cchhh--cCCCCCCEEeccCCCCCCc---cCcchhCCCCCCCEEEccCCcccccccccCC
Q 002432          299 KLKNLEILSLIESDIVE---FPEEL--GKLTKLRLLDLTNCFHLKV---IAPNVIASFTRLEELYMSNCFVEWKVEDEGS  370 (922)
Q Consensus       299 ~L~~L~~L~L~~~~l~~---lp~~i--~~L~~L~~L~l~~~~~l~~---~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~  370 (922)
                      ++++|++|++++|++..   +|..+  +++++|++|++++|. ++.   ++...+.++++|++|++++|.+..       
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-------  242 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRD-------  242 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCS-------
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCc-------
Confidence            88888888888887653   34455  778888888888875 663   333434577888888888887763       


Q ss_pred             cccccccC-cccCCCCCCCCEEEeeecCCCCCCcc
Q 002432          371 SSKKSKAS-LDELMPLPRLTTLEIAVENDNALPEG  404 (922)
Q Consensus       371 ~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~  404 (922)
                            .. ...+..+++|+.|++++|....+|..
T Consensus       243 ------~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~  271 (312)
T 1wwl_A          243 ------AAGAPSCDWPSQLNSLNLSFTGLKQVPKG  271 (312)
T ss_dssp             ------SCCCSCCCCCTTCCEEECTTSCCSSCCSS
T ss_pred             ------ccchhhhhhcCCCCEEECCCCccChhhhh
Confidence                  11 23455667888888887776665554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.67  E-value=2.5e-17  Score=186.72  Aligned_cols=98  Identities=17%  Similarity=0.211  Sum_probs=40.0

Q ss_pred             CCcEEEeeCCcCccC-chhhhccCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCC
Q 002432          257 ELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCF  335 (922)
Q Consensus       257 ~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~  335 (922)
                      +|++|+|++|.+..+ |..|+.+++|++|+|++|.+.....++.+++|++|++++|.++.+|.    .++|++|++++|.
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~  110 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNN  110 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCCc
Confidence            344444444444433 23344444444444444444431114444444444444444443332    1344444444442


Q ss_pred             CCCccCcchhCCCCCCCEEEccCCccc
Q 002432          336 HLKVIAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       336 ~l~~~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                       +..++..   .+++|++|++++|.+.
T Consensus       111 -l~~~~~~---~l~~L~~L~L~~N~l~  133 (487)
T 3oja_A          111 -ISRVSCS---RGQGKKNIYLANNKIT  133 (487)
T ss_dssp             -CCCEEEC---CCSSCEEEECCSSCCC
T ss_pred             -CCCCCcc---ccCCCCEEECCCCCCC
Confidence             3333322   2334444444444433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.66  E-value=1.6e-15  Score=156.16  Aligned_cols=169  Identities=20%  Similarity=0.278  Sum_probs=145.4

Q ss_pred             EEecCCCCCCCCCccccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCc
Q 002432          190 FLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQ  267 (922)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~  267 (922)
                      +...+..+..+|. .....++.|++++|.+..++.. + ++++|++|++++|.+.   .++...|..+++|++|++++|.
T Consensus        19 l~~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~   94 (251)
T 3m19_A           19 VDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ---TLSAGVFDDLTELGTLGLANNQ   94 (251)
T ss_dssp             EECTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC---CCCTTTTTTCTTCCEEECTTSC
T ss_pred             EecCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC---ccCHhHhccCCcCCEEECCCCc
Confidence            3344455555554 4567899999999999887664 3 8999999999999876   6777777999999999999999


Q ss_pred             CccCc-hhhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCccCcc
Q 002432          268 LFSLP-SSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPN  343 (922)
Q Consensus       268 i~~lp-~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~  343 (922)
                      ++.+| ..+..+++|++|++++|.+.. + ..+.++++|++|++++|+++.+|. .++++++|++|++++|. +..++..
T Consensus        95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~  173 (251)
T 3m19_A           95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHG  173 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTT
T ss_pred             ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHH
Confidence            99886 467899999999999999998 4 557999999999999999998877 58999999999999986 8888887


Q ss_pred             hhCCCCCCCEEEccCCcccc
Q 002432          344 VIASFTRLEELYMSNCFVEW  363 (922)
Q Consensus       344 ~l~~L~~L~~L~L~~~~~~~  363 (922)
                      .+.++++|++|++++|.+..
T Consensus       174 ~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          174 AFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTTCTTCCEEECCSCCBCT
T ss_pred             HHhCCCCCCEEEeeCCceeC
Confidence            79999999999999998763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.66  E-value=4.5e-16  Score=168.90  Aligned_cols=227  Identities=17%  Similarity=0.136  Sum_probs=178.2

Q ss_pred             CCCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCC
Q 002432          652 LPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPP  731 (922)
Q Consensus       652 l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~  731 (922)
                      ++++++|++++|+|+.++...+ ..+++|++|+|++|..++.++ ...+.++++++++.+.++++++.+...       .
T Consensus        29 ~~~l~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~l~~l~~~-------~   99 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQKGAF-SGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYINPE-------A   99 (350)
T ss_dssp             CTTCSEEEEESCCCSEECTTSS-TTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETTCCEECTT-------S
T ss_pred             CCCCCEEEccCCcCCCcCHHHH-cCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCcccccCch-------h
Confidence            4689999999999999876544 468999999999976666654 355788899988888888889888432       2


Q ss_pred             cccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcc
Q 002432          732 CFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLE  811 (922)
Q Consensus       732 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  811 (922)
                      +..+++|++|+++++. ++.++.... ....++..|++.+++++..++...                    .......++
T Consensus       100 f~~l~~L~~L~l~~n~-l~~~~~~~~-~~~~~l~~l~l~~~~~i~~l~~~~--------------------f~~~~~~l~  157 (350)
T 4ay9_X          100 FQNLPNLQYLLISNTG-IKHLPDVHK-IHSLQKVLLDIQDNINIHTIERNS--------------------FVGLSFESV  157 (350)
T ss_dssp             BCCCTTCCEEEEEEEC-CSSCCCCTT-CCBSSCEEEEEESCTTCCEECTTS--------------------STTSBSSCE
T ss_pred             hhhccccccccccccc-cccCCchhh-cccchhhhhhhccccccccccccc--------------------hhhcchhhh
Confidence            3347899999999864 455543322 256678899999988998887642                    112235789


Q ss_pred             eEeechhhhhhhcCCCCCCCCCCCCccEEEeec-CCCcccchhHHhhcCCCCeEEEecccceEEecCCccccccceEecc
Q 002432          812 ELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRD-DDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELI  890 (922)
Q Consensus       812 ~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~-~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~~sL~~L~i~  890 (922)
                      .|++++|++..+.+..|.    .++|++|.+.+ |.++.+|.+.++++++|++|++++|.++.+++..  +.+|+.|.+.
T Consensus       158 ~L~L~~N~i~~i~~~~f~----~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~~l  231 (350)
T 4ay9_X          158 ILWLNKNGIQEIHNSAFN----GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRAR  231 (350)
T ss_dssp             EEECCSSCCCEECTTSST----TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--CTTCCEEECT
T ss_pred             hhccccccccCCChhhcc----ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--hccchHhhhc
Confidence            999999999887766543    46899999987 9999999999999999999999999999987654  7899999999


Q ss_pred             ccccccccccCCCCCCCcccccccEEEeeec
Q 002432          891 CLNDLEYLWIPNSKMGDSILQNLEILKTVAR  921 (922)
Q Consensus       891 ~c~~L~~l~~~~~~~~l~~L~~L~~l~l~~~  921 (922)
                      +|++++.+|      .+..|++|+.++++++
T Consensus       232 ~~~~l~~lP------~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          232 STYNLKKLP------TLEKLVALMEASLTYP  256 (350)
T ss_dssp             TCTTCCCCC------CTTTCCSCCEEECSCH
T ss_pred             cCCCcCcCC------CchhCcChhhCcCCCC
Confidence            999999998      3567888999988764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=5.7e-16  Score=175.52  Aligned_cols=169  Identities=18%  Similarity=0.194  Sum_probs=114.1

Q ss_pred             CcceEEEeecCCCCCCCC-CC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEE
Q 002432          207 KKCYAISWIDSSGGELPE-GL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTL  284 (922)
Q Consensus       207 ~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L  284 (922)
                      ++++.|++++|.+..+++ .+ .+++|++|++++|...   .+++  |..+++|++|++++|.+..+|..    ++|++|
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L  104 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY---ETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETL  104 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCE---EEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCC---CCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEE
Confidence            467788888887766653 22 7778888888877654   2333  57777888888888877766532    677888


Q ss_pred             EccCCCCCC-ccccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCccCcchhC-CCCCCCEEEccCCcc
Q 002432          285 CLDYSTLGD-ITIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVIA-SFTRLEELYMSNCFV  361 (922)
Q Consensus       285 ~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~-~L~~L~~L~L~~~~~  361 (922)
                      ++++|.+.. +..  .+++|++|++++|.++.+ |..++++++|++|++++|. +..+++..+. .+++|++|++++|.+
T Consensus       105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             ECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCcc
Confidence            888887777 332  457778888888877765 4457777788888887775 5554333354 677888888887776


Q ss_pred             cccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCC
Q 002432          362 EWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALP  402 (922)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  402 (922)
                      ..               +.....+++|+.|++++|....+|
T Consensus       182 ~~---------------~~~~~~l~~L~~L~Ls~N~l~~~~  207 (487)
T 3oja_A          182 YD---------------VKGQVVFAKLKTLDLSSNKLAFMG  207 (487)
T ss_dssp             CE---------------EECCCCCTTCCEEECCSSCCCEEC
T ss_pred             cc---------------ccccccCCCCCEEECCCCCCCCCC
Confidence            63               133445777777777777655443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.64  E-value=3e-15  Score=156.19  Aligned_cols=182  Identities=25%  Similarity=0.307  Sum_probs=154.2

Q ss_pred             ecCCCCCCCCCccccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC
Q 002432          192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL  271 (922)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l  271 (922)
                      ..+.....++.....+++++|++.+|.+..++....+++|++|++++|...   .++...|.++++|++|++++|.+..+
T Consensus        48 l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~  124 (272)
T 3rfs_A           48 ANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ---SLPNGVFDKLTNLKELVLVENQLQSL  124 (272)
T ss_dssp             CTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCC---CCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred             eCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccC---ccChhHhcCCcCCCEEECCCCcCCcc
Confidence            333444555555668899999999999988876669999999999999876   67777789999999999999999988


Q ss_pred             ch-hhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCC
Q 002432          272 PS-SIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIAS  347 (922)
Q Consensus       272 p~-~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~  347 (922)
                      |. .++.+++|++|++++|.+.. + ..++++++|++|++++|+++.+|.. ++++++|++|++++|. +..+++..+++
T Consensus       125 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~  203 (272)
T 3rfs_A          125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDR  203 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTT
T ss_pred             CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhC
Confidence            65 47999999999999999988 4 5679999999999999999988765 6899999999999986 88888777899


Q ss_pred             CCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecC
Q 002432          348 FTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEN  397 (922)
Q Consensus       348 L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  397 (922)
                      +++|++|++++|.+..                    .+++|+.|+++.+.
T Consensus       204 l~~L~~L~l~~N~~~~--------------------~~~~l~~l~~~~n~  233 (272)
T 3rfs_A          204 LTSLQYIWLHDNPWDC--------------------TCPGIRYLSEWINK  233 (272)
T ss_dssp             CTTCCEEECCSSCBCC--------------------CTTTTHHHHHHHHH
T ss_pred             CcCCCEEEccCCCccc--------------------cCcHHHHHHHHHHh
Confidence            9999999999997652                    35567777777654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.62  E-value=4.8e-15  Score=149.96  Aligned_cols=149  Identities=22%  Similarity=0.313  Sum_probs=117.4

Q ss_pred             ceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEcc
Q 002432          209 CYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLD  287 (922)
Q Consensus       209 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~  287 (922)
                      .+.++.+++.+..+|.... ++|++|++++|.+.   .++...|.++++|++|+|++|.+..+|. .+..+++|++|+|+
T Consensus        21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQIT---KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccC---ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            3457777777777776543 78888888888766   5555556888888888888888888764 46788888888888


Q ss_pred             CCCCCC-c-cccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432          288 YSTLGD-I-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       288 ~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      +|.++. + ..|..+++|++|++++|+++.+|..+.++++|++|++++|. +..++...+..+++|+.|++++|.+.
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            888877 4 55788888888888888888888888888888888888875 77777666788888888888887665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.62  E-value=1.9e-15  Score=174.39  Aligned_cols=175  Identities=26%  Similarity=0.323  Sum_probs=153.8

Q ss_pred             cccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCE
Q 002432          204 DALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQT  283 (922)
Q Consensus       204 ~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~  283 (922)
                      ..+..++.|++.+|.+..++....+++|+.|++++|.+.   .++.  |..+++|++|+|++|.+..+| .+..+++|++
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~---~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT---DIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCC---CCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCC---CChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence            456788999999999988887669999999999999876   5655  689999999999999999887 6999999999


Q ss_pred             EEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccc
Q 002432          284 LCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEW  363 (922)
Q Consensus       284 L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~  363 (922)
                      |+|++|.+..++.+..+++|+.|+|++|.++.+ ..+..+++|++|++++|. +..+++  +..+++|++|+|++|.+..
T Consensus       114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             EEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCCC
Confidence            999999999977899999999999999999988 579999999999999986 777776  8999999999999998863


Q ss_pred             cccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCc
Q 002432          364 KVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE  403 (922)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  403 (922)
                                     +..+..+++|+.|++++|.....|.
T Consensus       190 ---------------l~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          190 ---------------LRALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             ---------------CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred             ---------------ChHHccCCCCCEEEccCCcCcCCcc
Confidence                           3568899999999999987655443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.61  E-value=4.3e-15  Score=156.31  Aligned_cols=166  Identities=20%  Similarity=0.242  Sum_probs=143.6

Q ss_pred             CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCCccccCCCCcCCE
Q 002432          226 LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEI  305 (922)
Q Consensus       226 ~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~  305 (922)
                      .++++|+.|++++|...   .++.  +..+++|++|++++|.+..++. +.++++|++|++++|.+..++.+..+++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~---~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIK---SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCC---CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcc---cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCE
Confidence            36789999999999876   5654  5889999999999999999887 9999999999999999999777999999999


Q ss_pred             EEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCC
Q 002432          306 LSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPL  385 (922)
Q Consensus       306 L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  385 (922)
                      |++++|+++.++ .+.++++|++|++++|. +..++ . ++++++|++|++++|.+..              . ..+..+
T Consensus       117 L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~-l~~l~~L~~L~L~~N~l~~--------------~-~~l~~l  177 (291)
T 1h6t_A          117 LSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-V-LSRLTKLDTLSLEDNQISD--------------I-VPLAGL  177 (291)
T ss_dssp             EECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-G-GGGCTTCSEEECCSSCCCC--------------C-GGGTTC
T ss_pred             EECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcch-h-hccCCCCCEEEccCCcccc--------------c-hhhcCC
Confidence            999999999884 69999999999999986 88874 3 8999999999999998873              2 238899


Q ss_pred             CCCCEEEeeecCCCCCCccccccccceeEEE
Q 002432          386 PRLTTLEIAVENDNALPEGFFVRELERFKIL  416 (922)
Q Consensus       386 ~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~  416 (922)
                      ++|+.|++++|....++....+++|+.+.+.
T Consensus       178 ~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~  208 (291)
T 1h6t_A          178 TKLQNLYLSKNHISDLRALAGLKNLDVLELF  208 (291)
T ss_dssp             TTCCEEECCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred             CccCEEECCCCcCCCChhhccCCCCCEEECc
Confidence            9999999999998877654466677776654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.61  E-value=3.2e-15  Score=159.40  Aligned_cols=177  Identities=17%  Similarity=0.182  Sum_probs=144.6

Q ss_pred             cCcceEEEeecCCCC-CCCCC---CCCCCccEEEccCCCCcCCCCCChHHhhCC-----CCCcEEEeeCCcCccCc-hhh
Q 002432          206 LKKCYAISWIDSSGG-ELPEG---LECPQLELLLLSSEHSSVDVNIPQRFFTGM-----RELKVVDLTNMQLFSLP-SSI  275 (922)
Q Consensus       206 ~~~l~~L~l~~~~~~-~l~~~---~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l-----~~Lr~L~L~~~~i~~lp-~~i  275 (922)
                      .+++++|++++|.+. .+|..   ..+++|++|++++|...   .+|.. |..+     ++|++|++++|.+..+| ..+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~  169 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA---TRDAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQV  169 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS---SSSSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc---chhHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence            568999999999985 56654   37899999999999876   45544 4665     99999999999999876 789


Q ss_pred             hccCCCCEEEccCCCCCC----cccc--CCCCcCCEEEeecCCCccc---chh-hcCCCCCCEEeccCCCCCCccC-cch
Q 002432          276 DLLVNLQTLCLDYSTLGD----ITII--GKLKNLEILSLIESDIVEF---PEE-LGKLTKLRLLDLTNCFHLKVIA-PNV  344 (922)
Q Consensus       276 ~~L~~L~~L~L~~~~l~~----p~~i--~~L~~L~~L~L~~~~l~~l---p~~-i~~L~~L~~L~l~~~~~l~~~p-~~~  344 (922)
                      +++++|++|++++|.+..    |..+  +++++|++|++++|+++.+   +.. +.++++|++|++++|. +...+ ...
T Consensus       170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~  248 (312)
T 1wwl_A          170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPS  248 (312)
T ss_dssp             CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSC
T ss_pred             ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhh
Confidence            999999999999999754    3444  8999999999999999854   333 4688999999999986 66544 344


Q ss_pred             hCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCc
Q 002432          345 IASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE  403 (922)
Q Consensus       345 l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  403 (922)
                      +..+++|++|++++|.+.              ..+..+.  ++|++|++++|....+|.
T Consensus       249 ~~~l~~L~~L~Ls~N~l~--------------~ip~~~~--~~L~~L~Ls~N~l~~~p~  291 (312)
T 1wwl_A          249 CDWPSQLNSLNLSFTGLK--------------QVPKGLP--AKLSVLDLSYNRLDRNPS  291 (312)
T ss_dssp             CCCCTTCCEEECTTSCCS--------------SCCSSCC--SEEEEEECCSSCCCSCCC
T ss_pred             hhhcCCCCEEECCCCccC--------------hhhhhcc--CCceEEECCCCCCCCChh
Confidence            677999999999999887              3344554  799999999999887765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.61  E-value=3.5e-15  Score=148.80  Aligned_cols=170  Identities=22%  Similarity=0.326  Sum_probs=131.1

Q ss_pred             eEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEccC
Q 002432          210 YAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDY  288 (922)
Q Consensus       210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~  288 (922)
                      +.++..++.+..+|... .++|+.|++++|...   .++...|.++++|++|++++|.++.+|. .+..+++|++|++++
T Consensus        10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK---SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC---cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            35666666666666543 458888999888766   6777777888999999999998888765 468889999999999


Q ss_pred             CCCCC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccc
Q 002432          289 STLGD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKV  365 (922)
Q Consensus       289 ~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~  365 (922)
                      |.+.. + ..+.++++|++|++++|+++.+|.. +.++++|++|++++|. +..++...++++++|++|++++|.+.   
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~---  161 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD---  161 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee---
Confidence            98887 4 4578899999999999988887765 6888999999999875 77887776788999999999888654   


Q ss_pred             cccCCcccccccCcccCCCCCCCCEEEeeecCC-CCCCcc
Q 002432          366 EDEGSSSKKSKASLDELMPLPRLTTLEIAVEND-NALPEG  404 (922)
Q Consensus       366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~  404 (922)
                                       +.+++|+.|+++.+.. +.+|.+
T Consensus       162 -----------------~~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          162 -----------------CTCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             -----------------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred             -----------------cCCCCHHHHHHHHHhCCceeecc
Confidence                             2345777777776653 345544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.61  E-value=3.7e-15  Score=147.02  Aligned_cols=146  Identities=18%  Similarity=0.218  Sum_probs=64.6

Q ss_pred             cCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCcc-CchhhhccCCCCEE
Q 002432          206 LKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS-LPSSIDLLVNLQTL  284 (922)
Q Consensus       206 ~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L  284 (922)
                      .+++++|++.+|.+..++....+++|++|++++|...   .++  .+..+++|++|++++|.+.. .|..++.+++|++|
T Consensus        43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~---~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT---NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS---CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC---cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            3445555555555554443224444444444444221   111  12444444444444444442 33444444444444


Q ss_pred             EccCCCCCC--ccccCCCCcCCEEEeecCC-CcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCc
Q 002432          285 CLDYSTLGD--ITIIGKLKNLEILSLIESD-IVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCF  360 (922)
Q Consensus       285 ~L~~~~l~~--p~~i~~L~~L~~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~  360 (922)
                      ++++|.+..  |..++.+++|++|++++|. ++.+| .+.++++|++|++++|. +..++ . +..+++|++|++++|.
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~-l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-G-IEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-T-GGGCSSCCEEEECBC-
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-H-hccCCCCCEEEeeCcc
Confidence            444444443  3444444444444444443 44443 34444444444444443 33333 1 4444444444444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.61  E-value=5e-15  Score=148.65  Aligned_cols=148  Identities=21%  Similarity=0.298  Sum_probs=92.3

Q ss_pred             eEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccC
Q 002432          210 YAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDY  288 (922)
Q Consensus       210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~  288 (922)
                      +.+++.++.+..+|.... ++++.|++++|.+.   .++...|..+++|++|+|++|.+..+ |..|.++++|++|+|++
T Consensus        14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~---~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK---VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC---EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC---CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            345666666666665432 46666666666554   45555556666677777776666654 55666666666666666


Q ss_pred             CCCCC-c-cccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432          289 STLGD-I-TIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       289 ~~l~~-p-~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      |.+.. | ..|.++++|++|++++|+++.+ |..+.++++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            66666 3 3456666666666666666655 3446666666666666664 66665555666666666666666543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.60  E-value=1.4e-15  Score=157.33  Aligned_cols=172  Identities=18%  Similarity=0.183  Sum_probs=140.0

Q ss_pred             cCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEE
Q 002432          206 LKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLC  285 (922)
Q Consensus       206 ~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~  285 (922)
                      ..++..+.+.++.+..++...++++|++|++++|...   .++ . +..+++|++|++++|.+..+|. +.++++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~---~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ---SLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC---CCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc---cch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence            3445556666777766664447889999999998765   566 3 5889999999999999999887 99999999999


Q ss_pred             ccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccc
Q 002432          286 LDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKV  365 (922)
Q Consensus       286 L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~  365 (922)
                      +++|.+...+.+.. .+|++|++++|+++.++ .+.++++|++|++++|. ++.++.  ++.+++|++|++++|.+..  
T Consensus        92 L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~--  164 (263)
T 1xeu_A           92 VNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITN--  164 (263)
T ss_dssp             CCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCB--
T ss_pred             CCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcc--
Confidence            99999988433444 99999999999999886 58999999999999986 888863  8899999999999998873  


Q ss_pred             cccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCc
Q 002432          366 EDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE  403 (922)
Q Consensus       366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  403 (922)
                                   ...+..+++|+.|++++|.....|.
T Consensus       165 -------------~~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          165 -------------TGGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             -------------CTTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             -------------hHHhccCCCCCEEeCCCCcccCCcc
Confidence                         2678889999999999988655543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.59  E-value=6.6e-15  Score=147.77  Aligned_cols=148  Identities=16%  Similarity=0.254  Sum_probs=90.8

Q ss_pred             eEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCC-ChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEcc
Q 002432          210 YAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNI-PQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLD  287 (922)
Q Consensus       210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l-~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~  287 (922)
                      +.++++++.+..+|..+ ...++.|++++|.+.   .+ +..+|.++++|++|++++|.++.++. .|..+++|++|+|+
T Consensus        14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~---~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFT---VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC---EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCC---ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            35677777766666543 234566666666554   33 33445666666666666666666543 56666666666666


Q ss_pred             CCCCCC--ccccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432          288 YSTLGD--ITIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       288 ~~~l~~--p~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      +|.+..  +..|..+++|++|++++|+++.+ |..+.++++|++|++++|. ++.+++..+..+++|++|++++|.+.
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence            666665  24466666666666666666655 4456666666666666654 55554444666666666666666554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.59  E-value=8.5e-15  Score=158.84  Aligned_cols=145  Identities=17%  Similarity=0.210  Sum_probs=57.5

Q ss_pred             EeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCcc-Cch-hhhccCCCCE-EEccCC
Q 002432          213 SWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS-LPS-SIDLLVNLQT-LCLDYS  289 (922)
Q Consensus       213 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~-lp~-~i~~L~~L~~-L~L~~~  289 (922)
                      +.+++.+..+|..+ .++++.|++++|.+.   .+|.+.|.++++|++|+|++|.+.+ +|. .|.++++|+. +.+.+|
T Consensus        15 ~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~---~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           15 LCQESKVTEIPSDL-PRNAIELRFVLTKLR---VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             EEESTTCCSCCTTC-CTTCSEEEEESCCCS---EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             EecCCCCCccCcCc-CCCCCEEEccCCcCC---CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            33334444444322 133444444444433   3444444444444444444444322 222 2344444332 233333


Q ss_pred             CCCC--ccccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCccCcchhCCCC-CCCEEEccCCcc
Q 002432          290 TLGD--ITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNVIASFT-RLEELYMSNCFV  361 (922)
Q Consensus       290 ~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~-~L~~L~L~~~~~  361 (922)
                      ++..  |..|..+++|++|++++|+++.+|. .+....++..|++.++..+..++...+..+. .++.|++++|.+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            4443  2334444444444444444443332 1233333444444433334444433333332 244444444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.59  E-value=7.7e-15  Score=144.75  Aligned_cols=150  Identities=17%  Similarity=0.219  Sum_probs=131.2

Q ss_pred             CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC--ccccCCCCcCC
Q 002432          227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLE  304 (922)
Q Consensus       227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~  304 (922)
                      ++++|+.|++++|.+.   .+| . +..+++|++|++++|.+..++ .+..+++|++|++++|.+..  +..++.+++|+
T Consensus        42 ~l~~L~~L~l~~n~i~---~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           42 QMNSLTYITLANINVT---DLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHTCCEEEEESSCCS---CCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hcCCccEEeccCCCcc---ChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            6789999999999876   677 3 589999999999999887765 68999999999999999986  89999999999


Q ss_pred             EEEeecCCCcc-cchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCC
Q 002432          305 ILSLIESDIVE-FPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELM  383 (922)
Q Consensus       305 ~L~L~~~~l~~-lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~  383 (922)
                      +|++++|+++. .|..++++++|++|++++|..++.+|.  ++++++|++|++++|.+..               +..+.
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~---------------~~~l~  178 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD---------------YRGIE  178 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC---------------CTTGG
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC---------------hHHhc
Confidence            99999999984 678899999999999999866888873  8999999999999998863               33788


Q ss_pred             CCCCCCEEEeeecCCC
Q 002432          384 PLPRLTTLEIAVENDN  399 (922)
Q Consensus       384 ~l~~L~~L~l~~~~~~  399 (922)
                      .+++|+.|++++|.+.
T Consensus       179 ~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          179 DFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             GCSSCCEEEECBC---
T ss_pred             cCCCCCEEEeeCcccC
Confidence            8999999999999865

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.58  E-value=5.1e-16  Score=168.01  Aligned_cols=144  Identities=17%  Similarity=0.204  Sum_probs=70.9

Q ss_pred             ceEEEeecCCCCCCCCCC-CC--CCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCcc--CchhhhccCCCCE
Q 002432          209 CYAISWIDSSGGELPEGL-EC--PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS--LPSSIDLLVNLQT  283 (922)
Q Consensus       209 l~~L~l~~~~~~~l~~~~-~~--~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~  283 (922)
                      .++++++++.+.  +... .+  ++++.|++.+|...   ..+..+ ..+++|++|++++|.+..  +|..+..+++|++
T Consensus        49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~---~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMD---QPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEEC---SCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             heeeccccccCC--HHHHHhhhhccceEEEcCCcccc---ccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            455666555432  1111 22  45555555555433   222222 345555555555555542  4555555555555


Q ss_pred             EEccCCCCCC--ccccCCCCcCCEEEeecC-CCc--ccchhhcCCCCCCEEeccCCCCCCc--cCcchhCCCC-CCCEEE
Q 002432          284 LCLDYSTLGD--ITIIGKLKNLEILSLIES-DIV--EFPEELGKLTKLRLLDLTNCFHLKV--IAPNVIASFT-RLEELY  355 (922)
Q Consensus       284 L~L~~~~l~~--p~~i~~L~~L~~L~L~~~-~l~--~lp~~i~~L~~L~~L~l~~~~~l~~--~p~~~l~~L~-~L~~L~  355 (922)
                      |++++|.+..  +..++.+++|++|++++| .++  .+|..+.++++|++|++++|..++.  ++.. +.+++ +|++|+
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~  201 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLN  201 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEE
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEE
Confidence            5555555543  455555555555555555 444  2444455555555555555522432  2222 44555 555555


Q ss_pred             ccCC
Q 002432          356 MSNC  359 (922)
Q Consensus       356 L~~~  359 (922)
                      +++|
T Consensus       202 l~~~  205 (336)
T 2ast_B          202 LSGY  205 (336)
T ss_dssp             CCSC
T ss_pred             eCCC
Confidence            5555

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.57  E-value=1.6e-14  Score=144.98  Aligned_cols=147  Identities=16%  Similarity=0.257  Sum_probs=128.6

Q ss_pred             cEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEe
Q 002432          232 ELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSL  308 (922)
Q Consensus       232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L  308 (922)
                      +.++++++...   .+|..+   .+.|+.|++++|.++.+|. .+..+++|++|+|++|.+..  |..|.++++|++|++
T Consensus        14 ~~v~c~~~~l~---~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L   87 (220)
T 2v9t_B           14 NIVDCRGKGLT---EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL   87 (220)
T ss_dssp             TEEECTTSCCS---SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred             CEEEcCCCCcC---cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence            67888888766   788755   3789999999999998865 79999999999999999987  689999999999999


Q ss_pred             ecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCC
Q 002432          309 IESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPR  387 (922)
Q Consensus       309 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  387 (922)
                      ++|+++.+|.. +.++++|++|++++|. +..+++..+..+++|++|++++|.+..             .....+..+++
T Consensus        88 s~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~  153 (220)
T 2v9t_B           88 YGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQT-------------IAKGTFSPLRA  153 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC-------------CCTTTTTTCTT
T ss_pred             CCCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCE-------------ECHHHHhCCCC
Confidence            99999999876 6899999999999986 888877779999999999999999874             33456888999


Q ss_pred             CCEEEeeecCC
Q 002432          388 LTTLEIAVEND  398 (922)
Q Consensus       388 L~~L~l~~~~~  398 (922)
                      |+.|++++|..
T Consensus       154 L~~L~L~~N~~  164 (220)
T 2v9t_B          154 IQTMHLAQNPF  164 (220)
T ss_dssp             CCEEECCSSCE
T ss_pred             CCEEEeCCCCc
Confidence            99999998874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.56  E-value=2.5e-14  Score=143.52  Aligned_cols=148  Identities=14%  Similarity=0.165  Sum_probs=128.2

Q ss_pred             cEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc--hhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEE
Q 002432          232 ELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP--SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILS  307 (922)
Q Consensus       232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~  307 (922)
                      ++++++++...   .+|..+   ...+++|++++|.++.++  ..++.+++|++|++++|.++.  +..|.++++|++|+
T Consensus        14 ~~l~~s~n~l~---~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   87 (220)
T 2v70_A           14 TTVDCSNQKLN---KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL   87 (220)
T ss_dssp             TEEECCSSCCS---SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEeEeCCCCcc---cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence            58999998776   788755   456799999999999874  358999999999999999998  46899999999999


Q ss_pred             eecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCC
Q 002432          308 LIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLP  386 (922)
Q Consensus       308 L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  386 (922)
                      +++|+++.+|.. +.++++|++|++++|. +..+++..+.++++|++|++++|.+..             ..+..+..++
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~  153 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITT-------------VAPGAFDTLH  153 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCC-------------BCTTTTTTCT
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCE-------------ECHHHhcCCC
Confidence            999999988665 8999999999999986 888866669999999999999998874             3457888999


Q ss_pred             CCCEEEeeecCCC
Q 002432          387 RLTTLEIAVENDN  399 (922)
Q Consensus       387 ~L~~L~l~~~~~~  399 (922)
                      +|+.|++++|...
T Consensus       154 ~L~~L~L~~N~l~  166 (220)
T 2v70_A          154 SLSTLNLLANPFN  166 (220)
T ss_dssp             TCCEEECCSCCEE
T ss_pred             CCCEEEecCcCCc
Confidence            9999999988743

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.56  E-value=2.4e-14  Score=142.71  Aligned_cols=158  Identities=22%  Similarity=0.268  Sum_probs=134.7

Q ss_pred             CCCCCCCCCccccCcceEEEeecCCCCCCCCCC--CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC
Q 002432          194 NGDVWEWPDEDALKKCYAISWIDSSGGELPEGL--ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL  271 (922)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l  271 (922)
                      +.+...++. ...+++++|++.+|.+..++...  .+++|++|++++|...   .++...|..+++|++|++++|.++.+
T Consensus        16 ~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~   91 (208)
T 2o6s_A           16 SQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ---SLPNGVFNKLTSLTYLNLSTNQLQSL   91 (208)
T ss_dssp             SSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC---ccChhhcCCCCCcCEEECCCCcCCcc
Confidence            334444443 45678999999999998887743  8999999999999876   78888889999999999999999988


Q ss_pred             ch-hhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCC
Q 002432          272 PS-SIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIAS  347 (922)
Q Consensus       272 p~-~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~  347 (922)
                      |. .++++++|++|++++|.+.. + ..+.++++|++|++++|+++.+|.. +.++++|++|++++|..        .+.
T Consensus        92 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~  163 (208)
T 2o6s_A           92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCT  163 (208)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCC
T ss_pred             CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecC
Confidence            76 47899999999999999988 4 5589999999999999999988776 79999999999999852        345


Q ss_pred             CCCCCEEEccCCcccc
Q 002432          348 FTRLEELYMSNCFVEW  363 (922)
Q Consensus       348 L~~L~~L~L~~~~~~~  363 (922)
                      +++|+.|+++.|.+.+
T Consensus       164 ~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          164 CPGIRYLSEWINKHSG  179 (208)
T ss_dssp             TTTTHHHHHHHHHCTT
T ss_pred             CCCHHHHHHHHHhCCc
Confidence            7789999999888776

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.55  E-value=2.5e-14  Score=152.32  Aligned_cols=187  Identities=16%  Similarity=0.096  Sum_probs=129.7

Q ss_pred             CcceEEEeecCCCCC-CCCC---CCCCCccEEEccCCCCcCCCCCC---hHHhhCCCCCcEEEeeCCcCccCc-hhhhcc
Q 002432          207 KKCYAISWIDSSGGE-LPEG---LECPQLELLLLSSEHSSVDVNIP---QRFFTGMRELKVVDLTNMQLFSLP-SSIDLL  278 (922)
Q Consensus       207 ~~l~~L~l~~~~~~~-l~~~---~~~~~Lr~L~l~~~~~~~~~~l~---~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L  278 (922)
                      .++++|++.+|.+.. .|..   ..+++|++|++++|....  ..+   ...+..+++|++|++++|.+..+| ..++.+
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWAT--GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSS--TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccc--hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            357888888888743 3333   467888888888887652  222   233356888888888888888664 578888


Q ss_pred             CCCCEEEccCCCCCC------ccccCCCCcCCEEEeecCCCcccchh----hcCCCCCCEEeccCCCCCCcc-CcchhCC
Q 002432          279 VNLQTLCLDYSTLGD------ITIIGKLKNLEILSLIESDIVEFPEE----LGKLTKLRLLDLTNCFHLKVI-APNVIAS  347 (922)
Q Consensus       279 ~~L~~L~L~~~~l~~------p~~i~~L~~L~~L~L~~~~l~~lp~~----i~~L~~L~~L~l~~~~~l~~~-p~~~l~~  347 (922)
                      ++|++|++++|++..      +..++.+++|++|++++|+++.+|..    ++++++|++|++++|. +... |.. ++.
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~  246 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APR  246 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSS
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHh
Confidence            888888888888643      13346788888888888888766553    4778888888888876 5555 554 666


Q ss_pred             C---CCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCcccccccccee
Q 002432          348 F---TRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERF  413 (922)
Q Consensus       348 L---~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l  413 (922)
                      +   ++|++|++++|.+.              ..+..+.  ++|+.|++++|....+|....+++|+.+
T Consensus       247 ~~~~~~L~~L~Ls~N~l~--------------~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L  299 (310)
T 4glp_A          247 CMWSSALNSLNLSFAGLE--------------QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNL  299 (310)
T ss_dssp             CCCCTTCCCEECCSSCCC--------------SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCE
T ss_pred             ccCcCcCCEEECCCCCCC--------------chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEE
Confidence            5   58888888888776              2333443  6888888888887766543234444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.54  E-value=1.4e-14  Score=157.79  Aligned_cols=171  Identities=20%  Similarity=0.217  Sum_probs=126.9

Q ss_pred             eEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhh-CCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEcc
Q 002432          210 YAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFT-GMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLD  287 (922)
Q Consensus       210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~-~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~  287 (922)
                      +.+++.++.+..+|..+ ...++.|++++|.+.   .++...|. ++++|++|+|++|.+..++ ..|.++++|++|+|+
T Consensus        21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~---~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLS---RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCC---EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCccCccC-CCCCCEEECCCCCCC---ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            56788888887777654 245788888888766   56666666 8888888888888888775 468888888888888


Q ss_pred             CCCCCC-c-cccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCccCcchh---CCCCCCCEEEccCCcc
Q 002432          288 YSTLGD-I-TIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVI---ASFTRLEELYMSNCFV  361 (922)
Q Consensus       288 ~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l---~~L~~L~~L~L~~~~~  361 (922)
                      +|.+.. + ..|..+.+|++|++++|+++.+ |..|.++++|++|++++|. +..+|...+   .++++|++|++++|.+
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            888877 3 5688888888888888888866 5568888888888888875 788887645   5688888888888877


Q ss_pred             cccccccCCcccccccCcccCCCCCC--CCEEEeeecCC
Q 002432          362 EWKVEDEGSSSKKSKASLDELMPLPR--LTTLEIAVEND  398 (922)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~  398 (922)
                      ..             .....+..++.  ++.|++.+|..
T Consensus       176 ~~-------------l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          176 KK-------------LPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CC-------------CCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             Cc-------------cCHHHhhhccHhhcceEEecCCCc
Confidence            63             12234444554  36777777764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.54  E-value=5.6e-14  Score=142.03  Aligned_cols=149  Identities=20%  Similarity=0.260  Sum_probs=129.1

Q ss_pred             ccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEE
Q 002432          231 LELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILS  307 (922)
Q Consensus       231 Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~  307 (922)
                      .+.++++++...   .+|..+   .++|++|++++|.+..+ |..+..+++|++|+|++|.+.. + ..|..+++|++|+
T Consensus        21 ~~~v~c~~~~l~---~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           21 GTTVDCRSKRHA---SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             TTEEECTTSCCS---SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEeEccCCCcC---ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence            467888887765   788755   48999999999999987 6789999999999999999988 4 6689999999999


Q ss_pred             eecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCC
Q 002432          308 LIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLP  386 (922)
Q Consensus       308 L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  386 (922)
                      +++|+++.+|.. +..+++|++|++++|. +..+|.. +.++++|++|++++|.+..             .....+..++
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~  159 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKS-------------IPHGAFDRLS  159 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCC-------------CCTTTTTTCT
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCc-------------cCHHHHhCCC
Confidence            999999988765 6899999999999986 8899987 8999999999999998873             2235688899


Q ss_pred             CCCEEEeeecCCCC
Q 002432          387 RLTTLEIAVENDNA  400 (922)
Q Consensus       387 ~L~~L~l~~~~~~~  400 (922)
                      +|+.|++++|....
T Consensus       160 ~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          160 SLTHAYLFGNPWDC  173 (229)
T ss_dssp             TCCEEECTTSCBCT
T ss_pred             CCCEEEeeCCCccC
Confidence            99999999987543

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.54  E-value=3.5e-14  Score=165.99  Aligned_cols=163  Identities=17%  Similarity=0.267  Sum_probs=126.5

Q ss_pred             ceEeC---CCCCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHHHHHHHhcCCCCC
Q 002432            5 ANFSI---EILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTEN   81 (922)
Q Consensus         5 ~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~~~l~~~~~~~~~   81 (922)
                      .+|++   ++|+.+||++||.++++.  +.....+.+.+|+++|+|+||||+.+|+.|+.+.  ..|+.+++.+......
T Consensus       276 ~~~~v~~l~~L~~~ea~~L~~~~~~~--~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~  351 (591)
T 1z6t_A          276 PKYVVPVESSLGKEKGLEILSLFVNM--KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFK  351 (591)
T ss_dssp             CEEEEECCSSCCHHHHHHHHHHHHTS--CGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCC
T ss_pred             CceEeecCCCCCHHHHHHHHHHHhCC--CcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHH
Confidence            34555   589999999999999954  2334467899999999999999999999999873  3699888887622110


Q ss_pred             ----CCccchHHHHHHHHHHHhcCCchhHHHHHhhcccc-CCCchhH-HHHHHHHhcCCcccccHHHHHHHHHHHHHHHH
Q 002432           82 ----NFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLM-PKSFFAS-DLFKYCIGLGIFRGIDMEDARNKLYTLVHELK  155 (922)
Q Consensus        82 ----~~~~~~~~~~~~l~lsY~~L~~~~lk~cfly~~~f-~~~~~~~-~Li~~WiaeG~i~~~~~e~~~~~~~~~i~~L~  155 (922)
                          ........+..++..||+.||++ .|.||+|+|+| +|+.|+. .++..|.++       .+++    .+++++|+
T Consensus       352 ~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~----~~~l~~L~  419 (591)
T 1z6t_A          352 RIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEV----EDILQEFV  419 (591)
T ss_dssp             CSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHH----HHHHHHHH
T ss_pred             HhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccC-------HHHH----HHHHHHHH
Confidence                00112245899999999999999 79999999999 6899988 888899764       2333    45699999


Q ss_pred             hhcceeccc--ccceEEecHHHHHHHHHHH
Q 002432          156 DSCLLLEGY--SCREFSMHDVVHDVAILIA  183 (922)
Q Consensus       156 ~~~l~~~~~--~~~~~~mhdli~dl~~~~~  183 (922)
                      ++++++...  ....|.||+++|+++....
T Consensus       420 ~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          420 NKSLLFCDRNGKSFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             HTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred             hCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence            999997542  2347999999999998773

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.54  E-value=3.5e-14  Score=146.77  Aligned_cols=149  Identities=22%  Similarity=0.219  Sum_probs=132.8

Q ss_pred             cccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCE
Q 002432          204 DALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQT  283 (922)
Q Consensus       204 ~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~  283 (922)
                      ....++++|++.+|.+..++....+++|+.|++++|...   .++.  |.++++|++|++++|.++.+|....  .+|++
T Consensus        38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~---~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~  110 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS---DLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSR  110 (263)
T ss_dssp             HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred             hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC---CChh--hccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence            456789999999999999986558999999999999876   5666  6999999999999999999876443  99999


Q ss_pred             EEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccc
Q 002432          284 LCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEW  363 (922)
Q Consensus       284 L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~  363 (922)
                      |++++|.+..++.+..+++|++|++++|+++.+| .++.+++|++|++++|. +..++  .++.+++|+.|++++|.+..
T Consensus       111 L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~--~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          111 LFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTG--GLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             EECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCT--TSTTCCCCCEEEEEEEEEEC
T ss_pred             EEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchH--HhccCCCCCEEeCCCCcccC
Confidence            9999999999777999999999999999999987 79999999999999986 77773  38999999999999998763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.53  E-value=2.4e-14  Score=152.49  Aligned_cols=174  Identities=14%  Similarity=0.104  Sum_probs=143.2

Q ss_pred             cccCcceEEEeecCCCCCCCCC------CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCcc---Cch-
Q 002432          204 DALKKCYAISWIDSSGGELPEG------LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS---LPS-  273 (922)
Q Consensus       204 ~~~~~l~~L~l~~~~~~~l~~~------~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~---lp~-  273 (922)
                      ....+++.|++++|.+......      ..+++|++|++++|...   .++...|+.+++|++|++++|.+..   ++. 
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  190 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP---AFSCEQVRAFPALTSLDLSDNPGLGERGLMAA  190 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC---CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTT
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc---hhhHHHhccCCCCCEEECCCCCCccchhhhHH
Confidence            3467899999999998653221      25889999999999876   6776667999999999999999763   433 


Q ss_pred             -hhhccCCCCEEEccCCCCCC-cc----ccCCCCcCCEEEeecCCCccc-chhhcCC---CCCCEEeccCCCCCCccCcc
Q 002432          274 -SIDLLVNLQTLCLDYSTLGD-IT----IIGKLKNLEILSLIESDIVEF-PEELGKL---TKLRLLDLTNCFHLKVIAPN  343 (922)
Q Consensus       274 -~i~~L~~L~~L~L~~~~l~~-p~----~i~~L~~L~~L~L~~~~l~~l-p~~i~~L---~~L~~L~l~~~~~l~~~p~~  343 (922)
                       .++.+++|++|++++|.++. +.    .++.+++|++|++++|+++.+ |..+..+   ++|++|++++|. ++.+|..
T Consensus       191 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~  269 (310)
T 4glp_A          191 LCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKG  269 (310)
T ss_dssp             SCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSC
T ss_pred             HhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhh
Confidence             34789999999999999987 43    357899999999999999976 8778777   699999999986 8899886


Q ss_pred             hhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432          344 VIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN  399 (922)
Q Consensus       344 ~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  399 (922)
                       +.  ++|++|++++|.+..               +..+..+++|+.|++++|...
T Consensus       270 -~~--~~L~~L~Ls~N~l~~---------------~~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          270 -LP--AKLRVLDLSSNRLNR---------------APQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             -CC--SCCSCEECCSCCCCS---------------CCCTTSCCCCSCEECSSTTTS
T ss_pred             -hc--CCCCEEECCCCcCCC---------------CchhhhCCCccEEECcCCCCC
Confidence             54  899999999998873               133678899999999999754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.53  E-value=2.8e-14  Score=155.41  Aligned_cols=168  Identities=24%  Similarity=0.282  Sum_probs=143.6

Q ss_pred             EEecCCCCCCCCCccccCcceEEEeecCCCCCCCCCC---CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCC
Q 002432          190 FLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGL---ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNM  266 (922)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~---~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~  266 (922)
                      +...+.++..+|. .....++.|++++|.+..++...   .+++|+.|++++|.+.   .++...|.++++|++|+|++|
T Consensus        23 l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~---~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           23 LSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN---FISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSS
T ss_pred             EEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC---ccChhhccCCCCCCEEECCCC
Confidence            3344455666665 45678999999999998887643   7899999999999876   677777899999999999999


Q ss_pred             cCccCch-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccchhh----cCCCCCCEEeccCCCCCCc
Q 002432          267 QLFSLPS-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPEEL----GKLTKLRLLDLTNCFHLKV  339 (922)
Q Consensus       267 ~i~~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~~i----~~L~~L~~L~l~~~~~l~~  339 (922)
                      .++.+|. .|..+.+|++|+|++|.+..  +..|.++++|++|++++|+++.+|..+    .++++|++|++++|. +..
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~  177 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKK  177 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCc
Confidence            9998865 68999999999999999987  688999999999999999999998875    679999999999986 899


Q ss_pred             cCcchhCCCCC--CCEEEccCCccc
Q 002432          340 IAPNVIASFTR--LEELYMSNCFVE  362 (922)
Q Consensus       340 ~p~~~l~~L~~--L~~L~L~~~~~~  362 (922)
                      +|...+..++.  |+.|++.+|.+.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            99877888887  489999998775

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.53  E-value=2.6e-14  Score=164.96  Aligned_cols=178  Identities=19%  Similarity=0.215  Sum_probs=148.0

Q ss_pred             EeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCC
Q 002432          213 SWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLG  292 (922)
Q Consensus       213 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~  292 (922)
                      .+..+.+..+.....+.+|+.|++++|.+.   .++.  |..+++|+.|+|++|.+..+|. +..+++|++|+|++|.+.
T Consensus        27 ~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~---~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~  100 (605)
T 1m9s_A           27 NLKKKSVTDAVTQNELNSIDQIIANNSDIK---SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK  100 (605)
T ss_dssp             HTTCSCTTSEECHHHHTTCCCCBCTTCCCC---CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred             hccCCCcccccchhcCCCCCEEECcCCCCC---CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC
Confidence            333344444444447889999999999875   5653  5899999999999999999887 999999999999999999


Q ss_pred             CccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcc
Q 002432          293 DITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSS  372 (922)
Q Consensus       293 ~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~  372 (922)
                      .++.+..+++|++|+|++|.+..+| .+..+++|+.|++++|. +..++ . ++.+++|+.|+|++|.+..         
T Consensus       101 ~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~-l~~l~~L~~L~Ls~N~l~~---------  167 (605)
T 1m9s_A          101 DLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-V-LSRLTKLDTLSLEDNQISD---------  167 (605)
T ss_dssp             CCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCG-G-GGSCTTCSEEECCSSCCCC---------
T ss_pred             CChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCch-h-hcccCCCCEEECcCCcCCC---------
Confidence            9778999999999999999999875 59999999999999986 88874 3 9999999999999998873         


Q ss_pred             cccccCcccCCCCCCCCEEEeeecCCCCCCccccccccceeEE
Q 002432          373 KKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKI  415 (922)
Q Consensus       373 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~  415 (922)
                           . ..+..+++|+.|++++|.+..++....+++|+.|.+
T Consensus       168 -----~-~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L  204 (605)
T 1m9s_A          168 -----I-VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL  204 (605)
T ss_dssp             -----C-GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEC
T ss_pred             -----c-hhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEc
Confidence                 2 228899999999999999887765436666666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.52  E-value=1.8e-15  Score=163.75  Aligned_cols=148  Identities=18%  Similarity=0.157  Sum_probs=108.0

Q ss_pred             CccEEEccCCCCcCCCCCChHHhhCC--CCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC---ccccCCCCcCC
Q 002432          230 QLELLLLSSEHSSVDVNIPQRFFTGM--RELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD---ITIIGKLKNLE  304 (922)
Q Consensus       230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l--~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~---p~~i~~L~~L~  304 (922)
                      .++.++++++.      +.+..+..+  +++++|++++|.+...+..+..+++|++|++++|.+..   +..+..+++|+
T Consensus        48 ~~~~l~l~~~~------~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           48 LWQTLDLTGKN------LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TSSEEECTTCB------CCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             hheeecccccc------CCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            47788888763      334555666  78888888888888766667788888888888888764   46778888888


Q ss_pred             EEEeecCCCc-ccchhhcCCCCCCEEeccCCCCCCc--cCcchhCCCCCCCEEEccCC-cccccccccCCcccccccCcc
Q 002432          305 ILSLIESDIV-EFPEELGKLTKLRLLDLTNCFHLKV--IAPNVIASFTRLEELYMSNC-FVEWKVEDEGSSSKKSKASLD  380 (922)
Q Consensus       305 ~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~--~p~~~l~~L~~L~~L~L~~~-~~~~~~~~~~~~~~~~~~~~~  380 (922)
                      +|++++|.++ ..|..++++++|++|++++|..++.  ++.. ++++++|++|++++| .+..            .....
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~------------~~~~~  188 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE------------KHVQV  188 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH------------HHHHH
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh------------HHHHH
Confidence            8888888777 5677788888888888888854653  4443 677888888888888 6552            01234


Q ss_pred             cCCCCC-CCCEEEeeec
Q 002432          381 ELMPLP-RLTTLEIAVE  396 (922)
Q Consensus       381 ~l~~l~-~L~~L~l~~~  396 (922)
                      .+..++ +|++|+++++
T Consensus       189 ~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          189 AVAHVSETITQLNLSGY  205 (336)
T ss_dssp             HHHHSCTTCCEEECCSC
T ss_pred             HHHhcccCCCEEEeCCC
Confidence            456667 7888887765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.52  E-value=5.3e-14  Score=134.83  Aligned_cols=136  Identities=26%  Similarity=0.250  Sum_probs=105.4

Q ss_pred             CCCCCcEEEeeCCcCc--cCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcc-cchhhcCCCCCCEEe
Q 002432          254 GMRELKVVDLTNMQLF--SLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVE-FPEELGKLTKLRLLD  330 (922)
Q Consensus       254 ~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~  330 (922)
                      ..++|++|++++|.+.  .+|..+..+++|++|++++|.+.....+..+++|++|++++|+++. +|..+.++++|++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            3477888888888887  7887788888888888888887777778888888888888888886 677677788888888


Q ss_pred             ccCCCCCCccCc-chhCCCCCCCEEEccCCcccccccccCCcccccccCc----ccCCCCCCCCEEEeeecCCCCCCcc
Q 002432          331 LTNCFHLKVIAP-NVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASL----DELMPLPRLTTLEIAVENDNALPEG  404 (922)
Q Consensus       331 l~~~~~l~~~p~-~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~  404 (922)
                      +++|. ++.+|. ..++++++|++|++++|.+..              .+    ..+..+++|+.|+++++....+|..
T Consensus       102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~--------------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          102 LSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTN--------------LNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             CBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGT--------------STTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             ccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcc--------------hHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            88875 777652 337888888888888887763              22    2577788888888888877666643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.52  E-value=1.4e-13  Score=156.82  Aligned_cols=159  Identities=21%  Similarity=0.248  Sum_probs=101.6

Q ss_pred             cceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEcc
Q 002432          208 KCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLD  287 (922)
Q Consensus       208 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~  287 (922)
                      +++.|++.+|.+..+|..+ .++|++|++++|.+.   .+|    ..+++|++|++++|.++.+|. +++  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~---~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI---SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS---CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc---ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence            5666777777776666544 366777777777655   555    235677777777777777766 554  77777777


Q ss_pred             CCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccccc
Q 002432          288 YSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVE  366 (922)
Q Consensus       288 ~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~  366 (922)
                      +|.++. |.   .+++|++|++++|+++.+|.   .+++|++|++++|. ++.+|.  ++  ++|+.|++++|.+..   
T Consensus       129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~---  194 (571)
T 3cvr_A          129 NNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLES---  194 (571)
T ss_dssp             SSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSS---
T ss_pred             CCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCc---
Confidence            777766 44   56777777777777776665   46677777777764 666665  44  677777777776651   


Q ss_pred             ccCCcccccccCcccCCCCCCC-------CEEEeeecCCCCCCccc
Q 002432          367 DEGSSSKKSKASLDELMPLPRL-------TTLEIAVENDNALPEGF  405 (922)
Q Consensus       367 ~~~~~~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~  405 (922)
                                 .+. +..  +|       +.|++++|.+..+|..+
T Consensus       195 -----------lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l  226 (571)
T 3cvr_A          195 -----------LPA-VPV--RNHHSEETEIFFRCRENRITHIPENI  226 (571)
T ss_dssp             -----------CCC-CC----------CCEEEECCSSCCCCCCGGG
T ss_pred             -----------hhh-HHH--hhhcccccceEEecCCCcceecCHHH
Confidence                       112 222  44       77777777766666643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.49  E-value=5.1e-15  Score=163.30  Aligned_cols=181  Identities=17%  Similarity=0.152  Sum_probs=97.2

Q ss_pred             CcceEEEeecCCCCC-----CCCCC-CCCCccEEEccCCCCc-CCCCCChHH------hhCCCCCcEEEeeCCcCcc---
Q 002432          207 KKCYAISWIDSSGGE-----LPEGL-ECPQLELLLLSSEHSS-VDVNIPQRF------FTGMRELKVVDLTNMQLFS---  270 (922)
Q Consensus       207 ~~l~~L~l~~~~~~~-----l~~~~-~~~~Lr~L~l~~~~~~-~~~~l~~~~------~~~l~~Lr~L~L~~~~i~~---  270 (922)
                      +++++|++++|.+..     ++..+ .+++|++|++++|... +.+.+|..+      |..+++|++|+|++|.+..   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            456666666665532     11112 4566666666665432 112233332      3566666666666666654   


Q ss_pred             --CchhhhccCCCCEEEccCCCCCC--ccc----cCCC---------CcCCEEEeecCCCc--ccc---hhhcCCCCCCE
Q 002432          271 --LPSSIDLLVNLQTLCLDYSTLGD--ITI----IGKL---------KNLEILSLIESDIV--EFP---EELGKLTKLRL  328 (922)
Q Consensus       271 --lp~~i~~L~~L~~L~L~~~~l~~--p~~----i~~L---------~~L~~L~L~~~~l~--~lp---~~i~~L~~L~~  328 (922)
                        +|..+..+++|++|+|++|.+..  +..    +..+         ++|++|++++|+++  .+|   ..+.++++|++
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence              55566666666666666666643  222    2223         66666666666664  333   34556666666


Q ss_pred             EeccCCCCCCc-----cCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecC
Q 002432          329 LDLTNCFHLKV-----IAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEN  397 (922)
Q Consensus       329 L~l~~~~~l~~-----~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  397 (922)
                      |++++|. ++.     +.+..+.++++|++|++++|.+..         ......+..+..+++|+.|++++|.
T Consensus       192 L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~---------~g~~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          192 VKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH---------LGSSALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             EECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH---------HHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             EECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCc---------HHHHHHHHHHccCCCcCEEECCCCC
Confidence            6666664 441     112125666666666666665531         0001233445556666666666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.48  E-value=3.9e-13  Score=153.20  Aligned_cols=168  Identities=21%  Similarity=0.230  Sum_probs=140.1

Q ss_pred             CCCCCCCCCccccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch
Q 002432          194 NGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS  273 (922)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~  273 (922)
                      +..+..+|. ...++++.|++++|.+..+|  ..+++|++|++++|.+.   .+|. + .+  +|++|++++|.++.+|.
T Consensus        68 ~n~L~~lp~-~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~---~ip~-l-~~--~L~~L~Ls~N~l~~lp~  137 (571)
T 3cvr_A           68 RLNLSSLPD-NLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLS---TLPE-L-PA--SLKHLDVDNNQLTMLPE  137 (571)
T ss_dssp             SSCCSCCCS-CCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCS---CCCC-C-CT--TCCEEECCSSCCSCCCC
T ss_pred             CCCCCccCH-hHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCC---Ccch-h-hc--CCCEEECCCCcCCCCCC
Confidence            334444443 23578999999999999998  45799999999999876   5777 3 44  99999999999999988


Q ss_pred             hhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCC-
Q 002432          274 SIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRL-  351 (922)
Q Consensus       274 ~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L-  351 (922)
                         .+++|++|++++|.++. |.   .+++|++|++++|+++.+|. +.  ++|++|++++|. ++.+|.  +..  +| 
T Consensus       138 ---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~  203 (571)
T 3cvr_A          138 ---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNH  203 (571)
T ss_dssp             ---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC------
T ss_pred             ---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhh
Confidence               68999999999999998 55   68999999999999999998 76  899999999985 888887  554  67 


Q ss_pred             ------CEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432          352 ------EELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN  399 (922)
Q Consensus       352 ------~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  399 (922)
                            +.|++++|.+.              ..+..+..+++|+.|++++|...
T Consensus       204 ~~~~~L~~L~Ls~N~l~--------------~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          204 HSEETEIFFRCRENRIT--------------HIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             ----CCEEEECCSSCCC--------------CCCGGGGGSCTTEEEECCSSSCC
T ss_pred             cccccceEEecCCCcce--------------ecCHHHhcCCCCCEEEeeCCcCC
Confidence                  99999999887              45667778999999999999864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.45  E-value=2.4e-13  Score=130.30  Aligned_cols=129  Identities=20%  Similarity=0.217  Sum_probs=65.2

Q ss_pred             CcceEEEeecCCCC--CCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCcc-CchhhhccCCCC
Q 002432          207 KKCYAISWIDSSGG--ELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS-LPSSIDLLVNLQ  282 (922)
Q Consensus       207 ~~l~~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~  282 (922)
                      +++++|++.+|.+.  .+|..+ .+++|++|++++|...   .+  ..|..+++|++|++++|.+.. +|..+..+++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~---~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC---CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC---Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            45566666666554  454443 4555555555555433   22  223455555555555555554 444444455555


Q ss_pred             EEEccCCCCCC-c--cccCCCCcCCEEEeecCCCcccch----hhcCCCCCCEEeccCCCCCCccC
Q 002432          283 TLCLDYSTLGD-I--TIIGKLKNLEILSLIESDIVEFPE----ELGKLTKLRLLDLTNCFHLKVIA  341 (922)
Q Consensus       283 ~L~L~~~~l~~-p--~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~~L~~L~l~~~~~l~~~p  341 (922)
                      +|++++|.+.. +  ..+..+++|++|++++|.++.+|.    .+..+++|++|++++|. ...+|
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~  163 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP  163 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence            55555555544 2  445555555555555555554443    34555555555555543 44443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.44  E-value=6.4e-13  Score=130.00  Aligned_cols=124  Identities=17%  Similarity=0.223  Sum_probs=98.3

Q ss_pred             cEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEee
Q 002432          232 ELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLI  309 (922)
Q Consensus       232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~  309 (922)
                      ++++++++...   .+|..+   .++|++|++++|.++.+|..+.++++|++|++++|.++.  +..|.++++|++|+++
T Consensus        13 ~~l~~~~~~l~---~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           13 TVVRCSNKGLK---VLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TEEECTTSCCS---SCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCCC---cCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            45666666554   566544   357888888888888888888888888888888888887  4678888888888888


Q ss_pred             cCCCcccch-hhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432          310 ESDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       310 ~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      +|+++.+|. .|..+++|++|++++|. +..+|.+.+..+++|+.|++++|.+.
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence            888887764 57888888888888875 78888776888888888888888765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.42  E-value=3.7e-14  Score=154.62  Aligned_cols=127  Identities=16%  Similarity=0.167  Sum_probs=57.4

Q ss_pred             ccEEEccCCCCcCCCCCCh----HHhhCCC-CCcEEEeeCCcCccC-chhhhcc-----CCCCEEEccCCCCCC--ccc-
Q 002432          231 LELLLLSSEHSSVDVNIPQ----RFFTGMR-ELKVVDLTNMQLFSL-PSSIDLL-----VNLQTLCLDYSTLGD--ITI-  296 (922)
Q Consensus       231 Lr~L~l~~~~~~~~~~l~~----~~~~~l~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~L~~~~l~~--p~~-  296 (922)
                      |+.|++++|...   ..+.    ..|.+++ +|++|++++|.+... +..+..+     ++|++|++++|.+..  +.. 
T Consensus        24 L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           24 VTSLDLSLNNLY---SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CCEEECTTSCGG---GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             ceEEEccCCCCC---hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            555555555433   3332    3344454 555555555555533 3334433     555555555555543  221 


Q ss_pred             ---cCCC-CcCCEEEeecCCCcccch-h----hcC-CCCCCEEeccCCCCCCc-----cCcchhCCCC-CCCEEEccCCc
Q 002432          297 ---IGKL-KNLEILSLIESDIVEFPE-E----LGK-LTKLRLLDLTNCFHLKV-----IAPNVIASFT-RLEELYMSNCF  360 (922)
Q Consensus       297 ---i~~L-~~L~~L~L~~~~l~~lp~-~----i~~-L~~L~~L~l~~~~~l~~-----~p~~~l~~L~-~L~~L~L~~~~  360 (922)
                         +..+ ++|++|++++|.++..+. .    +.. .++|++|++++|. ++.     ++.. +..++ +|++|++++|.
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI-LAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH-HHTSCTTCCEEECTTSC
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH-HhcCCccccEeeecCCC
Confidence               2233 455555555555543322 1    222 2355555555543 332     1111 23333 55555555554


Q ss_pred             cc
Q 002432          361 VE  362 (922)
Q Consensus       361 ~~  362 (922)
                      +.
T Consensus       179 l~  180 (362)
T 3goz_A          179 LA  180 (362)
T ss_dssp             GG
T ss_pred             Cc
Confidence            43

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.42  E-value=6.6e-13  Score=130.03  Aligned_cols=124  Identities=18%  Similarity=0.200  Sum_probs=67.4

Q ss_pred             cEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchh--hhccCCCCEEEccCCCCCC--ccccCCCCcCCEEE
Q 002432          232 ELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSS--IDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILS  307 (922)
Q Consensus       232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~--i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~  307 (922)
                      ++++++++...   .+|..+   ..+|++|++++|.+..+|..  ++.+++|++|++++|.++.  |..|.++++|++|+
T Consensus        11 ~~l~~s~~~l~---~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           11 TTVDCTGRGLK---EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TEEECTTSCCS---SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CEEEcCCCCcC---cCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence            34445444433   444433   12556666666666555432  5566666666666666555  35556666666666


Q ss_pred             eecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432          308 LIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       308 L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      +++|+++.++.. +.++++|++|++++|. +..+++..++.+++|++|++++|.+.
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            666666554432 5556666666666654 44443333555666666666655544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.42  E-value=1.9e-13  Score=128.01  Aligned_cols=107  Identities=22%  Similarity=0.238  Sum_probs=66.7

Q ss_pred             CCCCcEEEeeCCcCc--cCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcc-cchhhcCCCCCCEEec
Q 002432          255 MRELKVVDLTNMQLF--SLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVE-FPEELGKLTKLRLLDL  331 (922)
Q Consensus       255 l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~l  331 (922)
                      .++|+.|++++|.+.  .+|..++.+++|++|++++|.+.....++.+++|++|++++|.++. +|..++++++|++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            355666666666666  5666666666666666666666555556666666666666666665 5555566666666666


Q ss_pred             cCCCCCCccCc-chhCCCCCCCEEEccCCccc
Q 002432          332 TNCFHLKVIAP-NVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       332 ~~~~~l~~~p~-~~l~~L~~L~~L~L~~~~~~  362 (922)
                      ++|. ++.++. ..++++++|++|++++|.+.
T Consensus        96 s~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           96 SGNK-IKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             TTSC-CCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             CCCc-CCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            6664 555431 22666666666666666555

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.41  E-value=3e-13  Score=160.35  Aligned_cols=155  Identities=19%  Similarity=0.249  Sum_probs=101.8

Q ss_pred             CcceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCcC-CCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEE
Q 002432          207 KKCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSV-DVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTL  284 (922)
Q Consensus       207 ~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~-~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L  284 (922)
                      .+++++.+.++.+...+... ....|+.+.+....... .-.++...|..++.|++|+|++|.+..+|..+.++++|++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L  252 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL  252 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence            45788999888876665433 33344443333221100 00355666799999999999999999999999999999999


Q ss_pred             EccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccc
Q 002432          285 CLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEW  363 (922)
Q Consensus       285 ~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~  363 (922)
                      +|++|.+.. |..|++|++|++|+|++|.++.+|..|++|++|++|++++|. ++.+|.. |+++++|++|+|++|.+.+
T Consensus       253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred             EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCccCC
Confidence            999999998 888999999999999999999999999999999999999985 8899987 9999999999999998874

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.41  E-value=8.4e-13  Score=129.25  Aligned_cols=125  Identities=23%  Similarity=0.331  Sum_probs=111.9

Q ss_pred             cEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-cc--ccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCC
Q 002432          259 KVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-IT--IIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNC  334 (922)
Q Consensus       259 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~--~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~  334 (922)
                      ++++++++.++.+|..+..  +|++|++++|.+.. +.  .|+.+++|++|++++|+++.+ |..+.++++|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            7899999999999987765  99999999999988 43  489999999999999999977 678999999999999998


Q ss_pred             CCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432          335 FHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN  399 (922)
Q Consensus       335 ~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  399 (922)
                      . +..++...++++++|++|++++|.+..             ..+..+..+++|+.|++++|...
T Consensus        89 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 K-IKEISNKMFLGLHQLKTLNLYDNQISC-------------VMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             C-CCEECSSSSTTCTTCCEEECCSSCCCE-------------ECTTSSTTCTTCCEEECTTCCBC
T ss_pred             c-CCccCHHHhcCCCCCCEEECCCCcCCe-------------eCHHHhhcCCCCCEEEeCCCCcc
Confidence            6 888887779999999999999999885             44677899999999999998754

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.39  E-value=5.3e-13  Score=128.79  Aligned_cols=108  Identities=19%  Similarity=0.204  Sum_probs=55.9

Q ss_pred             hCCCCCcEEEeeCCcCccCchhhhccC-CCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhh-cCCCCCCEEe
Q 002432          253 TGMRELKVVDLTNMQLFSLPSSIDLLV-NLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEEL-GKLTKLRLLD  330 (922)
Q Consensus       253 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~  330 (922)
                      ..+.+|++|++++|.++.+|. +..+. +|++|++++|.+.....++.+++|++|++++|.++.+|..+ +.+++|++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            344555555555555555533 33333 55555555555554445555555555555555555554333 5555555555


Q ss_pred             ccCCCCCCccCc-chhCCCCCCCEEEccCCccc
Q 002432          331 LTNCFHLKVIAP-NVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       331 l~~~~~l~~~p~-~~l~~L~~L~~L~L~~~~~~  362 (922)
                      +++|. ++.+|. ..++++++|++|++++|.+.
T Consensus        95 L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           95 LTNNS-LVELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             CCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             CCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC
Confidence            55553 455543 12555555555555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.38  E-value=7.2e-14  Score=152.35  Aligned_cols=153  Identities=17%  Similarity=0.179  Sum_probs=111.1

Q ss_pred             EEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-----hhhhccC-CCCEEEccCCCCCC--ccccCCC-----
Q 002432          234 LLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-----SSIDLLV-NLQTLCLDYSTLGD--ITIIGKL-----  300 (922)
Q Consensus       234 L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-----~~i~~L~-~L~~L~L~~~~l~~--p~~i~~L-----  300 (922)
                      +.++.|...   ...+.++...++|++|++++|.+...+     ..+..++ +|++|++++|.+..  +..+..+     
T Consensus         3 ~~ls~n~~~---~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            3 YKLTLHPGS---NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EECCCCTTC---CHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred             cccccccch---HHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence            456666544   333445566777999999999998775     5778888 89999999999876  5666665     


Q ss_pred             CcCCEEEeecCCCcccchh-----hcCC-CCCCEEeccCCCCCCccCcchh----CC-CCCCCEEEccCCcccccccccC
Q 002432          301 KNLEILSLIESDIVEFPEE-----LGKL-TKLRLLDLTNCFHLKVIAPNVI----AS-FTRLEELYMSNCFVEWKVEDEG  369 (922)
Q Consensus       301 ~~L~~L~L~~~~l~~lp~~-----i~~L-~~L~~L~l~~~~~l~~~p~~~l----~~-L~~L~~L~L~~~~~~~~~~~~~  369 (922)
                      ++|++|++++|.++..+..     +..+ ++|++|++++|. ++..+...+    .. .++|++|++++|.+..      
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~------  152 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGI------  152 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG------
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCH------
Confidence            9999999999998855432     5555 899999999986 777765433    34 3699999999998773      


Q ss_pred             CcccccccCcccCCCCC-CCCEEEeeecCCC
Q 002432          370 SSSKKSKASLDELMPLP-RLTTLEIAVENDN  399 (922)
Q Consensus       370 ~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~  399 (922)
                         .........+..++ +|++|++++|...
T Consensus       153 ---~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          153 ---KSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             ---SCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             ---HHHHHHHHHHhcCCccccEeeecCCCCc
Confidence               00112223344454 8999999988754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.38  E-value=8.6e-13  Score=123.48  Aligned_cols=121  Identities=21%  Similarity=0.245  Sum_probs=65.9

Q ss_pred             CcceEEEeecCCCC--CCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCcc-CchhhhccCCCC
Q 002432          207 KKCYAISWIDSSGG--ELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS-LPSSIDLLVNLQ  282 (922)
Q Consensus       207 ~~l~~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~  282 (922)
                      +++++|++.+|.+.  .+|..+ .+++|+.|++++|...   .+  ..|..+++|++|++++|.+.. +|..++.+++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC---CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC---Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            45666666666664  455443 5555666666555443   22  223555556666666665554 455555555555


Q ss_pred             EEEccCCCCCC-c--cccCCCCcCCEEEeecCCCcccch----hhcCCCCCCEEecc
Q 002432          283 TLCLDYSTLGD-I--TIIGKLKNLEILSLIESDIVEFPE----ELGKLTKLRLLDLT  332 (922)
Q Consensus       283 ~L~L~~~~l~~-p--~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~~L~~L~l~  332 (922)
                      +|++++|.+.. +  ..++.+++|++|++++|.++.+|.    .++.+++|++|+++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            55555555554 2  455555555555555555554443    34555555555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.38  E-value=2.5e-12  Score=125.75  Aligned_cols=125  Identities=22%  Similarity=0.251  Sum_probs=111.1

Q ss_pred             CcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCC
Q 002432          258 LKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCF  335 (922)
Q Consensus       258 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~  335 (922)
                      -++++++++.++.+|..+.  .+|++|++++|.+.. |..|..+++|++|++++|.++.++. .|.++++|++|++++|.
T Consensus        12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            3689999999999998765  689999999999998 8999999999999999999998865 58999999999999986


Q ss_pred             CCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCC
Q 002432          336 HLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEND  398 (922)
Q Consensus       336 ~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  398 (922)
                       +..+++..|+.+++|++|++++|.+..             .....+..+++|+.|++++|..
T Consensus        90 -l~~i~~~~f~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           90 -LRCIPPRTFDGLKSLRLLSLHGNDISV-------------VPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             -CCBCCTTTTTTCTTCCEEECCSSCCCB-------------CCTTTTTTCTTCCEEECCSSCE
T ss_pred             -cCEeCHHHhCCCCCCCEEECCCCCCCe-------------eChhhhhcCccccEEEeCCCCe
Confidence             889988779999999999999998873             2234588899999999998874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.35  E-value=3.1e-13  Score=149.02  Aligned_cols=183  Identities=20%  Similarity=0.295  Sum_probs=137.3

Q ss_pred             cCcceEEEeecCCCCCCC----CC--------CCCCCccEEEccCCCCcCCC--CCChHHhhCCCCCcEEEeeCCcCcc-
Q 002432          206 LKKCYAISWIDSSGGELP----EG--------LECPQLELLLLSSEHSSVDV--NIPQRFFTGMRELKVVDLTNMQLFS-  270 (922)
Q Consensus       206 ~~~l~~L~l~~~~~~~l~----~~--------~~~~~Lr~L~l~~~~~~~~~--~l~~~~~~~l~~Lr~L~L~~~~i~~-  270 (922)
                      .+++++|++++|.+..+.    ..        ..+++|++|++++|.+...+  .++. .+..+++|++|+|++|.+.. 
T Consensus        59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~  137 (386)
T 2ca6_A           59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQ  137 (386)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHH-HHHHCTTCCEEECCSSCCHHH
T ss_pred             CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHH-HHHhCCCCCEEECcCCCCCHH
Confidence            467899999998765442    21        26799999999999765211  1343 34889999999999999863 


Q ss_pred             ----Cchhhhcc---------CCCCEEEccCCCCCC---c---cccCCCCcCCEEEeecCCCc------ccchhhcCCCC
Q 002432          271 ----LPSSIDLL---------VNLQTLCLDYSTLGD---I---TIIGKLKNLEILSLIESDIV------EFPEELGKLTK  325 (922)
Q Consensus       271 ----lp~~i~~L---------~~L~~L~L~~~~l~~---p---~~i~~L~~L~~L~L~~~~l~------~lp~~i~~L~~  325 (922)
                          ++..+..+         ++|++|++++|.+..   +   ..+..+++|++|++++|+++      -.|..+.++++
T Consensus       138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~  217 (386)
T 2ca6_A          138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE  217 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred             HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence                34445555         899999999999873   3   46778999999999999888      23447889999


Q ss_pred             CCEEeccCCCCC-----CccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccC--CCCCCCCEEEeeecCC
Q 002432          326 LRLLDLTNCFHL-----KVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDEL--MPLPRLTTLEIAVEND  398 (922)
Q Consensus       326 L~~L~l~~~~~l-----~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~  398 (922)
                      |++|++++|. +     ..+|.. +.++++|++|++++|.+...         .....+..+  +++++|+.|++++|..
T Consensus       218 L~~L~Ls~n~-l~~~g~~~l~~~-l~~~~~L~~L~L~~n~i~~~---------~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          218 LKVLDLQDNT-FTHLGSSALAIA-LKSWPNLRELGLNDCLLSAR---------GAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             CCEEECCSSC-CHHHHHHHHHHH-GGGCTTCCEEECTTCCCCHH---------HHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             ccEEECcCCC-CCcHHHHHHHHH-HccCCCcCEEECCCCCCchh---------hHHHHHHHHhhccCCCeEEEECcCCcC
Confidence            9999999986 6     556665 88999999999999987630         000123445  4588999999999886


Q ss_pred             CC
Q 002432          399 NA  400 (922)
Q Consensus       399 ~~  400 (922)
                      ..
T Consensus       287 ~~  288 (386)
T 2ca6_A          287 EL  288 (386)
T ss_dssp             BH
T ss_pred             CH
Confidence            65

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.33  E-value=1.9e-12  Score=124.92  Aligned_cols=130  Identities=18%  Similarity=0.173  Sum_probs=79.5

Q ss_pred             CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccc-cCCCCcCC
Q 002432          227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITI-IGKLKNLE  304 (922)
Q Consensus       227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~-i~~L~~L~  304 (922)
                      .+.+|+.|++++|...   .++. +....++|++|++++|.++.+ ..++.+++|++|++++|.+.. |.. +..+++|+
T Consensus        17 ~~~~L~~L~l~~n~l~---~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIP---VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             CTTSCEEEECTTSCCC---SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CcCCceEEEeeCCCCc---hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            4455666666666544   3432 222233667777777666665 456666677777777776666 433 36667777


Q ss_pred             EEEeecCCCcccch--hhcCCCCCCEEeccCCCCCCccCcc---hhCCCCCCCEEEccCCccc
Q 002432          305 ILSLIESDIVEFPE--ELGKLTKLRLLDLTNCFHLKVIAPN---VIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       305 ~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~---~l~~L~~L~~L~L~~~~~~  362 (922)
                      +|++++|.++.+|.  .+.++++|++|++++|. +..+|..   .++.+++|+.|++++|...
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            77777776666665  56667777777777764 5555543   3566777777777666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.33  E-value=3e-13  Score=160.32  Aligned_cols=132  Identities=22%  Similarity=0.231  Sum_probs=113.3

Q ss_pred             CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCE
Q 002432          227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEI  305 (922)
Q Consensus       227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~  305 (922)
                      .+..|+.|++++|.+.   .+|..+| ++++|++|+|++|.++.+|..|++|++|++|+|++|.|.. |..|++|++|++
T Consensus       222 ~l~~L~~L~Ls~n~l~---~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIF---NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY  297 (727)
T ss_dssp             CCCCCCEEECTTSCCS---CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred             cCCCCcEEECCCCCCC---CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence            8899999999999876   7888885 8999999999999999999999999999999999999998 899999999999


Q ss_pred             EEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCC-CCEEEccCCcccc
Q 002432          306 LSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTR-LEELYMSNCFVEW  363 (922)
Q Consensus       306 L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~-L~~L~L~~~~~~~  363 (922)
                      |+|++|.++.+|..|++|++|++|++++|. +...++..+..+.. +..|++++|.+..
T Consensus       298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~~  355 (727)
T 4b8c_D          298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPEI  355 (727)
T ss_dssp             EECCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             EECCCCCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCcccC
Confidence            999999999999999999999999999997 66554443544321 2236677776653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.31  E-value=1.5e-11  Score=118.83  Aligned_cols=106  Identities=26%  Similarity=0.404  Sum_probs=60.4

Q ss_pred             CCCcEEEeeCCcCccCch-hhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEec
Q 002432          256 RELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDL  331 (922)
Q Consensus       256 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l  331 (922)
                      ++|++|++++|.++.+|. .++.+++|++|++++|.+.. + ..+..+++|++|++++|+++.+|.. +.++++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            455666666666555543 34555666666666666555 2 3355666666666666666655443 455666666666


Q ss_pred             cCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432          332 TNCFHLKVIAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       332 ~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      ++|. ++.+|...+.++++|++|++++|.+.
T Consensus       108 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          108 DTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence            6653 55555554455666666666665544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.29  E-value=2e-11  Score=117.83  Aligned_cols=124  Identities=24%  Similarity=0.321  Sum_probs=107.8

Q ss_pred             ceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEcc
Q 002432          209 CYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLD  287 (922)
Q Consensus       209 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~  287 (922)
                      .+.+++.++.+..+|... .++|+.|++++|...   .++...|..+++|++|++++|.++.+|. .++.+++|++|+++
T Consensus         9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCccCCCCC-CCCCcEEEeCCCccc---EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            356888888888887544 479999999999876   6787778999999999999999998875 47899999999999


Q ss_pred             CCCCCC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCC
Q 002432          288 YSTLGD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFH  336 (922)
Q Consensus       288 ~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~  336 (922)
                      +|.++. | ..+..+++|++|++++|+++.+|.. +.++++|++|++++|..
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            999988 4 5589999999999999999999876 58899999999999863

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.27  E-value=1.3e-11  Score=141.49  Aligned_cols=124  Identities=21%  Similarity=0.247  Sum_probs=105.9

Q ss_pred             CCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCC
Q 002432          256 RELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNC  334 (922)
Q Consensus       256 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~  334 (922)
                      ..|++|++++|.++.+|. ++.+++|++|+|++|.+.. |..|+.+++|++|++++|.++.+| .++++++|++|++++|
T Consensus       441 ~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred             cCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence            369999999999999997 9999999999999999999 899999999999999999999998 8999999999999998


Q ss_pred             CCCCcc--CcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEe
Q 002432          335 FHLKVI--APNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEI  393 (922)
Q Consensus       335 ~~l~~~--p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  393 (922)
                      . +..+  |.. ++++++|++|++++|.+..   .+.       ....-+..+++|+.|++
T Consensus       519 ~-l~~~~~p~~-l~~l~~L~~L~L~~N~l~~---~~~-------~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          519 R-LQQSAAIQP-LVSCPRLVLLNLQGNSLCQ---EEG-------IQERLAEMLPSVSSILT  567 (567)
T ss_dssp             C-CCSSSTTGG-GGGCTTCCEEECTTSGGGG---SSS-------CTTHHHHHCTTCSEEEC
T ss_pred             C-CCCCCCcHH-HhcCCCCCEEEecCCcCCC---Ccc-------HHHHHHHHCcccCccCC
Confidence            6 8887  555 9999999999999999874   110       11112334788888864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.27  E-value=1.4e-11  Score=141.28  Aligned_cols=188  Identities=19%  Similarity=0.224  Sum_probs=143.1

Q ss_pred             cceEEEeecCCCCCCCCCC-CCCCccEEEccCCCC-----------cCCCCCChHHhhCCCCCcEEE-eeCCcCccCch-
Q 002432          208 KCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHS-----------SVDVNIPQRFFTGMRELKVVD-LTNMQLFSLPS-  273 (922)
Q Consensus       208 ~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~-----------~~~~~l~~~~~~~l~~Lr~L~-L~~~~i~~lp~-  273 (922)
                      .+++|++++|.+..+|..+ .+++|+.|++++|..           ... ..++..++.+++|+.|+ ++.+.+..++. 
T Consensus       350 ~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~-~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l  428 (567)
T 1dce_A          350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKETLQYFSTLKAVDPMRAAYLDDLRSK  428 (567)
T ss_dssp             TSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             cceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc-cCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence            4445666666666666555 666777777755430           011 23344558889999998 66665544432 


Q ss_pred             -----hhhc--cCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchh
Q 002432          274 -----SIDL--LVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVI  345 (922)
Q Consensus       274 -----~i~~--L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l  345 (922)
                           .+..  ...|++|++++|.++. |. |+.+++|++|++++|+++.+|..++++++|++|++++|. ++.+| . +
T Consensus       429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~-l  504 (567)
T 1dce_A          429 FLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G-V  504 (567)
T ss_dssp             HHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-G
T ss_pred             hhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-c
Confidence                 1222  1369999999999999 55 999999999999999999999999999999999999986 88888 4 9


Q ss_pred             CCCCCCCEEEccCCcccccccccCCcccccccC-cccCCCCCCCCEEEeeecCCCCCCccc-----ccccccee
Q 002432          346 ASFTRLEELYMSNCFVEWKVEDEGSSSKKSKAS-LDELMPLPRLTTLEIAVENDNALPEGF-----FVRELERF  413 (922)
Q Consensus       346 ~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~l  413 (922)
                      +++++|++|++++|.+..             .. +..++.+++|+.|++++|.....|...     .+++|+.|
T Consensus       505 ~~l~~L~~L~Ls~N~l~~-------------~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          505 ANLPRLQELLLCNNRLQQ-------------SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             TTCSSCCEEECCSSCCCS-------------SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCCcEEECCCCCCCC-------------CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            999999999999999874             22 688999999999999999987776543     35667665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.25  E-value=3.1e-13  Score=133.30  Aligned_cols=114  Identities=18%  Similarity=0.257  Sum_probs=86.9

Q ss_pred             CCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCC
Q 002432          246 NIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLT  324 (922)
Q Consensus       246 ~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~  324 (922)
                      .+|.. |..+++|++|++++|.+..+| .++.+++|++|++++|.+.. |..+..+++|++|++++|+++.+| .+.+++
T Consensus        39 ~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~  115 (198)
T 1ds9_A           39 KMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLV  115 (198)
T ss_dssp             CCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHH
T ss_pred             hhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCC
Confidence            34443 477888888888888888877 78888888888888888777 666677788888888888888776 577888


Q ss_pred             CCCEEeccCCCCCCccCc-chhCCCCCCCEEEccCCcccc
Q 002432          325 KLRLLDLTNCFHLKVIAP-NVIASFTRLEELYMSNCFVEW  363 (922)
Q Consensus       325 ~L~~L~l~~~~~l~~~p~-~~l~~L~~L~~L~L~~~~~~~  363 (922)
                      +|++|++++|. +..++. ..++++++|++|++++|.+..
T Consensus       116 ~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          116 NLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            88888888875 666654 347788888888888887653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.21  E-value=4.9e-11  Score=114.29  Aligned_cols=101  Identities=27%  Similarity=0.419  Sum_probs=71.6

Q ss_pred             cEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCC
Q 002432          259 KVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCF  335 (922)
Q Consensus       259 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~  335 (922)
                      ++++++++.+..+|..+.  .+|++|++++|.+..  |..|.++++|++|+|++|+++.+|.. +.++++|++|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            567777777777776654  677777777777766  45677777777777777777777665 4677777777777764


Q ss_pred             CCCccCcchhCCCCCCCEEEccCCccc
Q 002432          336 HLKVIAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       336 ~l~~~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                       +..+|.+.++++++|++|++++|.+.
T Consensus        93 -l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           93 -LKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             -CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             -cceeCHHHhccccCCCEEEeCCCCcc
Confidence             66776655677777777777777654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.20  E-value=5.7e-11  Score=113.44  Aligned_cols=102  Identities=25%  Similarity=0.332  Sum_probs=74.3

Q ss_pred             CcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCC
Q 002432          258 LKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNC  334 (922)
Q Consensus       258 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~  334 (922)
                      .++++++++.++.+|..+.  .+|++|++++|.++.  |..|.++++|++|++++|+++.+|.. +.++++|++|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            4677777777777776653  677777777777776  46677777777777777777777655 477777777777776


Q ss_pred             CCCCccCcchhCCCCCCCEEEccCCccc
Q 002432          335 FHLKVIAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       335 ~~l~~~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      . +..+|.+.+.++++|++|++++|.+.
T Consensus        89 ~-l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 Q-LKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             C-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             c-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            4 77777665777777777777777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.18  E-value=6.3e-13  Score=131.06  Aligned_cols=147  Identities=21%  Similarity=0.260  Sum_probs=118.7

Q ss_pred             cceEEEeecC--CCCCCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEE
Q 002432          208 KCYAISWIDS--SGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTL  284 (922)
Q Consensus       208 ~l~~L~l~~~--~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L  284 (922)
                      .++...+.+.  .+..+|..+ .+++|++|++++|...   .+|  .|.++++|++|++++|.+..+|..+..+++|++|
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~---~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L   98 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE---KIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEEL   98 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES---CCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc---ccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEE
Confidence            3455555544  345555444 8899999999999876   577  4589999999999999999999989899999999


Q ss_pred             EccCCCCCCccccCCCCcCCEEEeecCCCcccch--hhcCCCCCCEEeccCCCCCCccCc----------chhCCCCCCC
Q 002432          285 CLDYSTLGDITIIGKLKNLEILSLIESDIVEFPE--ELGKLTKLRLLDLTNCFHLKVIAP----------NVIASFTRLE  352 (922)
Q Consensus       285 ~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~----------~~l~~L~~L~  352 (922)
                      ++++|.+..++.+..+++|++|++++|+++.+|.  .+.++++|++|++++|. +...++          ..+.++++|+
T Consensus        99 ~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~  177 (198)
T 1ds9_A           99 WISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             EEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred             ECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcE
Confidence            9999999994478999999999999999998765  78999999999999986 543322          2367889999


Q ss_pred             EEEccCCccc
Q 002432          353 ELYMSNCFVE  362 (922)
Q Consensus       353 ~L~L~~~~~~  362 (922)
                      .|+  ++.+.
T Consensus       178 ~Ld--~~~i~  185 (198)
T 1ds9_A          178 KLD--GMPVD  185 (198)
T ss_dssp             EEC--CGGGT
T ss_pred             EEC--CcccC
Confidence            887  44443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.10  E-value=2.9e-10  Score=108.81  Aligned_cols=104  Identities=24%  Similarity=0.296  Sum_probs=75.0

Q ss_pred             cEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEe
Q 002432          232 ELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSL  308 (922)
Q Consensus       232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L  308 (922)
                      +.++++++...   .+|..+   .++|++|++++|.++.+ |..|+++++|++|+|++|.+.. | ..|.++++|++|++
T Consensus        15 ~~l~~~~n~l~---~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           15 TLVNCQNIRLA---SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL   88 (174)
T ss_dssp             SEEECCSSCCS---SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cEEEeCCCCCC---ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence            55666666554   566544   36778888888888776 5567788888888888888777 4 34678888888888


Q ss_pred             ecCCCcccchh-hcCCCCCCEEeccCCCCCCccCc
Q 002432          309 IESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAP  342 (922)
Q Consensus       309 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~  342 (922)
                      ++|+++.+|.. +.++++|++|++++|. +...+.
T Consensus        89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~  122 (174)
T 2r9u_A           89 NDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECR  122 (174)
T ss_dssp             CSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred             CCCccceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence            88888877765 7788888888888875 554443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.04  E-value=2.2e-10  Score=122.77  Aligned_cols=157  Identities=20%  Similarity=0.209  Sum_probs=103.0

Q ss_pred             CCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCCC----CCc--ccc---
Q 002432          228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYSTL----GDI--TII---  297 (922)
Q Consensus       228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l----~~p--~~i---  297 (922)
                      +++|+.|.+.. ...   .|++..|.++++|+.|++.+|.+..++ ..|..+.++.++.+.....    ...  ..|   
T Consensus       100 ~~~L~~l~L~~-~i~---~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~  175 (329)
T 3sb4_A          100 KQTLEKVILSE-KIK---NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG  175 (329)
T ss_dssp             CTTCCC-CBCT-TCC---EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred             cCCCcEEECCc-ccc---chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence            77777777776 443   577777777788888888777776654 3566665565555443110    000  000   


Q ss_pred             -----------------------------------------------CCCCcCCEEEeecCCCcccchh-hcCCCCCCEE
Q 002432          298 -----------------------------------------------GKLKNLEILSLIESDIVEFPEE-LGKLTKLRLL  329 (922)
Q Consensus       298 -----------------------------------------------~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L  329 (922)
                                                                     ..+++|+.|++++|+++.+|.. |.++.+|+.|
T Consensus       176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred             cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence                                                           0267788888888778877664 7778888888


Q ss_pred             eccCCCCCCccCcchhCCCCCCC-EEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCcc
Q 002432          330 DLTNCFHLKVIAPNVIASFTRLE-ELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEG  404 (922)
Q Consensus       330 ~l~~~~~l~~~p~~~l~~L~~L~-~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  404 (922)
                      ++.++  +..++..+|.++++|+ .+++.+ .+..             .....+..+++|+.+++..+....++..
T Consensus       256 ~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~-------------I~~~aF~~c~~L~~l~l~~n~i~~I~~~  315 (329)
T 3sb4_A          256 KLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTA-------------IEFGAFMGCDNLRYVLATGDKITTLGDE  315 (329)
T ss_dssp             ECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCE-------------ECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred             ECCcc--cceehHHHhhCChhccEEEEEcc-cceE-------------EchhhhhCCccCCEEEeCCCccCccchh
Confidence            88774  7777777788888888 888766 3332             2346677788888888877776666554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.03  E-value=7.5e-10  Score=105.60  Aligned_cols=99  Identities=25%  Similarity=0.276  Sum_probs=72.0

Q ss_pred             ccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEE
Q 002432          231 LELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILS  307 (922)
Q Consensus       231 Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~  307 (922)
                      .+.++++++...   .+|..+   .++|++|++++|.++.+ |..|+.+++|++|+|++|.++. | ..|.++++|++|+
T Consensus        11 ~~~l~~s~n~l~---~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~   84 (170)
T 3g39_A           11 GTTVDCSGKSLA---SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS   84 (170)
T ss_dssp             TTEEECTTSCCS---SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEEeCCCCcC---ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence            356666666554   566544   36777888888888776 5567778888888888888777 3 4567888888888


Q ss_pred             eecCCCcccchh-hcCCCCCCEEeccCCC
Q 002432          308 LIESDIVEFPEE-LGKLTKLRLLDLTNCF  335 (922)
Q Consensus       308 L~~~~l~~lp~~-i~~L~~L~~L~l~~~~  335 (922)
                      +++|+++.+|.. +.++++|++|++++|.
T Consensus        85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            888888877664 7788888888888875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.96  E-value=3e-09  Score=113.94  Aligned_cols=101  Identities=12%  Similarity=0.048  Sum_probs=85.2

Q ss_pred             cccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCC-eEEEecccceEEecCC-ccccc
Q 002432          806 IFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLE-NLNLSFCSYKELFSNG-GQVHL  883 (922)
Q Consensus       806 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~-~L~l~~c~l~~l~~~~-~~~~s  883 (922)
                      .+++|+.|++++|++..+....|.   .+++|++|++.+| +..++...+.++++|+ .+++.+ .+..+.+.. ..+++
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~---~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFA---QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN  298 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTT---TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred             hcCCCeEEECCCCCcceecHhhhh---CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence            489999999999999888877766   8899999999998 9999999999999999 999998 888886655 34899


Q ss_pred             cceEeccccccccccccCCCCCCCcccccc
Q 002432          884 IKKLELICLNDLEYLWIPNSKMGDSILQNL  913 (922)
Q Consensus       884 L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L  913 (922)
                      |+.+++ ..++++.++...|. .+++|+.+
T Consensus       299 L~~l~l-~~n~i~~I~~~aF~-~~~~L~~l  326 (329)
T 3sb4_A          299 LRYVLA-TGDKITTLGDELFG-NGVPSKLI  326 (329)
T ss_dssp             EEEEEE-CSSCCCEECTTTTC-TTCCCCEE
T ss_pred             CCEEEe-CCCccCccchhhhc-CCcchhhh
Confidence            999998 55688999988887 65555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.83  E-value=8.2e-08  Score=104.95  Aligned_cols=195  Identities=14%  Similarity=0.156  Sum_probs=121.1

Q ss_pred             cccCCCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCC
Q 002432          649 KVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQ  728 (922)
Q Consensus       649 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~  728 (922)
                      +..+++|+.+++.+++++.++...+.  +.+|+.+.+.+  .++.+. ...|.++++|+.+++.+  +++.+.....   
T Consensus       176 F~~c~~L~~l~l~~n~l~~I~~~aF~--~~~L~~l~lp~--~l~~I~-~~aF~~~~~L~~l~l~~--~l~~I~~~aF---  245 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTKITKLPASTFV--YAGIEEVLLPV--TLKEIG-SQAFLKTSQLKTIEIPE--NVSTIGQEAF---  245 (401)
T ss_dssp             TTTCTTCCEEECTTSCCSEECTTTTT--TCCCSEEECCT--TCCEEC-TTTTTTCTTCCCEECCT--TCCEECTTTT---
T ss_pred             hhCcccCCeeecCCCcceEechhhEe--ecccCEEEeCC--chheeh-hhHhhCCCCCCEEecCC--CccCcccccc---
Confidence            34577888888888888888666554  47888888874  466663 35577888888888875  4666632111   


Q ss_pred             CCCcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCcc-----ccccccccccccccccccCCCCCccee
Q 002432          729 EPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLN-----TFASESFSFHSNEKKQLHVPKQPFFSF  803 (922)
Q Consensus       729 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~  803 (922)
                          .. .+|+.+.|.+  +++.++...+ .+|++|+.+.+.+. .+.     .++..                     .
T Consensus       246 ----~~-~~L~~i~lp~--~i~~I~~~aF-~~c~~L~~l~l~~~-~~~~~~~~~I~~~---------------------a  295 (401)
T 4fdw_A          246 ----RE-SGITTVKLPN--GVTNIASRAF-YYCPELAEVTTYGS-TFNDDPEAMIHPY---------------------C  295 (401)
T ss_dssp             ----TT-CCCSEEEEET--TCCEECTTTT-TTCTTCCEEEEESS-CCCCCTTCEECTT---------------------T
T ss_pred             ----cc-CCccEEEeCC--CccEEChhHh-hCCCCCCEEEeCCc-cccCCcccEECHH---------------------H
Confidence                11 5677777743  4555544332 37778888887653 221     23322                     2


Q ss_pred             eccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCc--cc
Q 002432          804 EKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGG--QV  881 (922)
Q Consensus       804 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~--~~  881 (922)
                      +.++++|+.+++.+ .+..+....|.   .+++|+.+.|.+ .+..++...+.++ +|+.+++.+|....+.+...  .+
T Consensus       296 F~~c~~L~~l~l~~-~i~~I~~~aF~---~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~  369 (401)
T 4fdw_A          296 LEGCPKLARFEIPE-SIRILGQGLLG---GNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP  369 (401)
T ss_dssp             TTTCTTCCEECCCT-TCCEECTTTTT---TCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred             hhCCccCCeEEeCC-ceEEEhhhhhc---CCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence            45677777777773 35555555543   667777777744 3666776677777 77777777775555544331  13


Q ss_pred             cccceEec
Q 002432          882 HLIKKLEL  889 (922)
Q Consensus       882 ~sL~~L~i  889 (922)
                      .+++.|.+
T Consensus       370 ~~l~~l~v  377 (401)
T 4fdw_A          370 DDITVIRV  377 (401)
T ss_dssp             TTCCEEEE
T ss_pred             CCccEEEe
Confidence            45566655

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.81  E-value=9.3e-09  Score=111.16  Aligned_cols=100  Identities=20%  Similarity=0.185  Sum_probs=66.3

Q ss_pred             EEEeeCC-cCccCchhhhccCCCCEEEccC-CCCCC-c-cccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCC
Q 002432          260 VVDLTNM-QLFSLPSSIDLLVNLQTLCLDY-STLGD-I-TIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNC  334 (922)
Q Consensus       260 ~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~-~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~  334 (922)
                      .++++++ .++.+|. ++.+.+|++|+|++ |.+.. + ..|++|.+|++|+|++|+++.+|. .|.+|++|++|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            3466666 6667777 77777777777775 66666 3 567777777777777777776543 4677777777777776


Q ss_pred             CCCCccCcchhCCCCCCCEEEccCCccc
Q 002432          335 FHLKVIAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       335 ~~l~~~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      . +..+|...+..+. |+.|++.+|.+.
T Consensus        91 ~-l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 A-LESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             C-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             c-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence            4 6666665444444 777777766654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.79  E-value=7.8e-10  Score=119.79  Aligned_cols=154  Identities=14%  Similarity=0.048  Sum_probs=68.5

Q ss_pred             cCcceEEEeecCCCCCCC-----CCC--CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhh--
Q 002432          206 LKKCYAISWIDSSGGELP-----EGL--ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSI--  275 (922)
Q Consensus       206 ~~~l~~L~l~~~~~~~l~-----~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i--  275 (922)
                      .+.++.|++++|.+....     ...  ..++|+.|++++|.+..  .-...++..+++|+.|+|++|.+... ...+  
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~--~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP--AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH--HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH--HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            345667777766653211     100  12455566665554321  11111222334555555555555421 1111  


Q ss_pred             ---hccCCCCEEEccCCCCCC--c----cccCCCCcCCEEEeecCCCcc-----cchhhcCCCCCCEEeccCCCCCCccC
Q 002432          276 ---DLLVNLQTLCLDYSTLGD--I----TIIGKLKNLEILSLIESDIVE-----FPEELGKLTKLRLLDLTNCFHLKVIA  341 (922)
Q Consensus       276 ---~~L~~L~~L~L~~~~l~~--p----~~i~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~~p  341 (922)
                         ....+|++|+|++|.+..  .    ..+..+++|++|+|++|.++.     ++..+...++|++|++++|. ++...
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g  227 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTA  227 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHH
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHH
Confidence               123455555555555533  1    223445555555555555442     23344445555555555553 33221


Q ss_pred             cc----hhCCCCCCCEEEccCCccc
Q 002432          342 PN----VIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       342 ~~----~l~~L~~L~~L~L~~~~~~  362 (922)
                      ..    .+...++|++|++++|.+.
T Consensus       228 ~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          228 ALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHHHhCCCCCEEeccCCCCC
Confidence            11    1233455555555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.74  E-value=4.2e-07  Score=99.30  Aligned_cols=217  Identities=11%  Similarity=0.072  Sum_probs=156.5

Q ss_pred             CcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcc
Q 002432          654 NLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCF  733 (922)
Q Consensus       654 ~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~  733 (922)
                      +|+.+.+.+ +++.+.... +..+++|+.+++.+ ++++.++. ..+. .++|+.+.+.+  +++.+...       .+.
T Consensus       158 ~L~~i~lp~-~l~~I~~~a-F~~c~~L~~l~l~~-n~l~~I~~-~aF~-~~~L~~l~lp~--~l~~I~~~-------aF~  223 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDI-FYYCYNLKKADLSK-TKITKLPA-STFV-YAGIEEVLLPV--TLKEIGSQ-------AFL  223 (401)
T ss_dssp             CCCEEECCT-TCCEECSST-TTTCTTCCEEECTT-SCCSEECT-TTTT-TCCCSEEECCT--TCCEECTT-------TTT
T ss_pred             CceEEEeCC-CccEehHHH-hhCcccCCeeecCC-CcceEech-hhEe-ecccCEEEeCC--chheehhh-------Hhh
Confidence            577777765 566664444 34679999999987 57887754 3354 58999999874  57777322       233


Q ss_pred             cccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceE
Q 002432          734 AFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEEL  813 (922)
Q Consensus       734 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  813 (922)
                      .+++|+.+.+.+  +++.+....+  .-++|+.+.+.  ++++.++..                     .+.++++|+.+
T Consensus       224 ~~~~L~~l~l~~--~l~~I~~~aF--~~~~L~~i~lp--~~i~~I~~~---------------------aF~~c~~L~~l  276 (401)
T 4fdw_A          224 KTSQLKTIEIPE--NVSTIGQEAF--RESGITTVKLP--NGVTNIASR---------------------AFYYCPELAEV  276 (401)
T ss_dssp             TCTTCCCEECCT--TCCEECTTTT--TTCCCSEEEEE--TTCCEECTT---------------------TTTTCTTCCEE
T ss_pred             CCCCCCEEecCC--CccCcccccc--ccCCccEEEeC--CCccEEChh---------------------HhhCCCCCCEE
Confidence            578899999986  5777766655  33789999995  357777654                     35779999999


Q ss_pred             eechhhhh-----hhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCcc-ccccceE
Q 002432          814 GLSIKDIM-----MLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQ-VHLIKKL  887 (922)
Q Consensus       814 ~l~~~~~~-----~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~-~~sL~~L  887 (922)
                      ++.++...     .+....|.   .+++|+.+.|. +.+..++...+.+|++|+.+.+..+ +..+...... + +|+.+
T Consensus       277 ~l~~~~~~~~~~~~I~~~aF~---~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l  350 (401)
T 4fdw_A          277 TTYGSTFNDDPEAMIHPYCLE---GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEV  350 (401)
T ss_dssp             EEESSCCCCCTTCEECTTTTT---TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEE
T ss_pred             EeCCccccCCcccEECHHHhh---CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEE
Confidence            99887654     45555554   88899999998 5699999999999999999999654 7777555533 5 99999


Q ss_pred             eccccccccccccCCCCCCCcccccccEEEeeec
Q 002432          888 ELICLNDLEYLWIPNSKMGDSILQNLEILKTVAR  921 (922)
Q Consensus       888 ~i~~c~~L~~l~~~~~~~~l~~L~~L~~l~l~~~  921 (922)
                      ++.++ .+..++...|. .++  ..++.|.+-.+
T Consensus       351 ~l~~n-~~~~l~~~~F~-~~~--~~l~~l~vp~~  380 (401)
T 4fdw_A          351 KVEGT-TPPQVFEKVWY-GFP--DDITVIRVPAE  380 (401)
T ss_dssp             EECCS-SCCBCCCSSCC-CSC--TTCCEEEECGG
T ss_pred             EEcCC-CCccccccccc-CCC--CCccEEEeCHH
Confidence            99654 66777777666 443  25666666543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.67  E-value=3.6e-08  Score=106.51  Aligned_cols=97  Identities=18%  Similarity=0.096  Sum_probs=66.4

Q ss_pred             EEccCC-CCcCCCCCChHHhhCCCCCcEEEeeC-CcCccCc-hhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEe
Q 002432          234 LLLSSE-HSSVDVNIPQRFFTGMRELKVVDLTN-MQLFSLP-SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSL  308 (922)
Q Consensus       234 L~l~~~-~~~~~~~l~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L  308 (922)
                      ++++++ ...   .+|.  +..+++|++|+|++ |.+..+| ..|++|.+|++|+|++|.+..  |..|.+|++|++|+|
T Consensus        13 v~~~~~n~l~---~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           13 LRCTRDGALD---SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             EECCSSCCCT---TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             EEcCCCCCCC---ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            455554 443   5666  47777777777775 7777665 467777777777777777776  356777777777777


Q ss_pred             ecCCCcccchhhcCCCCCCEEeccCCC
Q 002432          309 IESDIVEFPEELGKLTKLRLLDLTNCF  335 (922)
Q Consensus       309 ~~~~l~~lp~~i~~L~~L~~L~l~~~~  335 (922)
                      ++|+++.+|..+.....|++|++.+|.
T Consensus        88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             CCCccceeCHHHcccCCceEEEeeCCC
Confidence            777777776654333337777777765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.58  E-value=3.7e-09  Score=114.48  Aligned_cols=160  Identities=18%  Similarity=0.159  Sum_probs=116.9

Q ss_pred             CCCccEEEccCCCCcCCCCCChHHhh-----CCCCCcEEEeeCCcCcc--CchhhhccCCCCEEEccCCCCCC--cccc-
Q 002432          228 CPQLELLLLSSEHSSVDVNIPQRFFT-----GMRELKVVDLTNMQLFS--LPSSIDLLVNLQTLCLDYSTLGD--ITII-  297 (922)
Q Consensus       228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~-----~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~l~~--p~~i-  297 (922)
                      .+.|+.|++++|.+.   ......+.     ..++|++|+|++|.+..  +..-...+.+|++|+|++|.+..  ...+ 
T Consensus        71 ~~~L~~L~Ls~n~l~---~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~  147 (372)
T 3un9_A           71 LSSLRQLNLAGVRMT---PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR  147 (372)
T ss_dssp             HTTCCEEECTTSCCC---HHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred             HhhCCEEEecCCCCC---HHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence            467999999999754   21111122     23799999999999873  22233456789999999999976  3333 


Q ss_pred             ----CCCCcCCEEEeecCCCcc-----cchhhcCCCCCCEEeccCCCCCCccC----cchhCCCCCCCEEEccCCccccc
Q 002432          298 ----GKLKNLEILSLIESDIVE-----FPEELGKLTKLRLLDLTNCFHLKVIA----PNVIASFTRLEELYMSNCFVEWK  364 (922)
Q Consensus       298 ----~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~~p----~~~l~~L~~L~~L~L~~~~~~~~  364 (922)
                          ...++|++|++++|.++.     ++..+..+++|++|++++|. ++...    ...+...++|++|++++|.+.. 
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~-  225 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGD-  225 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCH-
T ss_pred             HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCH-
Confidence                457899999999998874     56667889999999999986 65432    1236778899999999998863 


Q ss_pred             ccccCCcccccccCcccCCCCCCCCEEEeeecCCCC
Q 002432          365 VEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNA  400 (922)
Q Consensus       365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  400 (922)
                              .........+...++|++|++++|.+..
T Consensus       226 --------~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          226 --------TAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             --------HHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             --------HHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence                    1111345667778899999999998654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.21  E-value=1.8e-05  Score=86.79  Aligned_cols=98  Identities=16%  Similarity=0.119  Sum_probs=57.0

Q ss_pred             ccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCc-cccc
Q 002432          805 KIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGG-QVHL  883 (922)
Q Consensus       805 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~-~~~s  883 (922)
                      ..+.+|+.+.+.++ +..+....|.   .+++|+.++|.+ .++.++...+.+|++|+.+.+..+ ++.+..... .+++
T Consensus       294 ~~~~~L~~i~l~~~-i~~I~~~aF~---~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          294 YGCSSLTEVKLLDS-VKFIGEEAFE---SCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN  367 (394)
T ss_dssp             TTCTTCCEEEECTT-CCEECTTTTT---TCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred             cccccccccccccc-cceechhhhc---CCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence            45667777777543 3344444433   667777777753 366777777777777777777654 555544332 2677


Q ss_pred             cceEeccccccccccccCCCCCCCccccc
Q 002432          884 IKKLELICLNDLEYLWIPNSKMGDSILQN  912 (922)
Q Consensus       884 L~~L~i~~c~~L~~l~~~~~~~~l~~L~~  912 (922)
                      |+.+++.+  .++.+. ..|. .+++|+.
T Consensus       368 L~~i~lp~--~~~~~~-~~F~-~c~~L~~  392 (394)
T 4fs7_A          368 LKKVELPK--RLEQYR-YDFE-DTTKFKW  392 (394)
T ss_dssp             CCEEEEEG--GGGGGG-GGBC-TTCEEEE
T ss_pred             CCEEEECC--CCEEhh-heec-CCCCCcE
Confidence            77777743  234443 2344 4444443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.21  E-value=1.1e-06  Score=94.14  Aligned_cols=142  Identities=17%  Similarity=0.273  Sum_probs=78.7

Q ss_pred             HHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCC----
Q 002432          699 MIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDK----  774 (922)
Q Consensus       699 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~----  774 (922)
                      ++..+|+|++|.|++|..+. +.         . ..+++|+.|.|..|..-...........+|+|+.|+++.+.+    
T Consensus       167 ll~~~P~L~~L~L~g~~~l~-l~---------~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~  235 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNLS-IG---------K-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGF  235 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTCB-CC---------S-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTC
T ss_pred             HHhcCCCCcEEEEeCCCCce-ec---------c-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccccc
Confidence            45666777777777653221 10         0 125677777776554211110001112578888888864321    


Q ss_pred             ---ccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcc--
Q 002432          775 ---LNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSAS--  849 (922)
Q Consensus       775 ---L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~--  849 (922)
                         +..+...                   . ....+|+|+.|++++|.+.......+.....+++|++|+|+.|.+..  
T Consensus       236 ~~~~~~l~~~-------------------l-~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G  295 (362)
T 2ra8_A          236 DGDMNVFRPL-------------------F-SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG  295 (362)
T ss_dssp             CSCGGGTGGG-------------------S-CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred             chhHHHHHHH-------------------H-hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence               1111100                   0 01347899999998887653211110001245789999998888776  


Q ss_pred             ---cchhHHhhcCCCCeEEEecccce
Q 002432          850 ---VPIGLLEKFHGLENLNLSFCSYK  872 (922)
Q Consensus       850 ---lp~~~l~~l~~L~~L~l~~c~l~  872 (922)
                         ++.. ++.+++|+.|++++|.+.
T Consensus       296 ~~~L~~~-L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          296 ARLLLDH-VDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred             HHHHHhh-cccCCcceEEECCCCcCC
Confidence               2322 257899999999988654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.16  E-value=8.5e-05  Score=81.30  Aligned_cols=122  Identities=11%  Similarity=0.220  Sum_probs=64.2

Q ss_pred             CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCCCCC--ccccCCCCcC
Q 002432          227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNL  303 (922)
Q Consensus       227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L  303 (922)
                      ++++|+.+.+..+ ..   .|.+..|.++.+|+.+++..+ ++.++ ..+.++..|+.+.+..+ +..  ...|.....+
T Consensus        69 ~c~~L~~i~lp~~-i~---~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~  142 (394)
T 4fs7_A           69 GCRKVTEIKIPST-VR---EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK  142 (394)
T ss_dssp             TCTTEEEEECCTT-CC---EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred             CCCCceEEEeCCC-cc---CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence            6777888777643 22   567777788888888877644 55553 35666777776655432 222  2334443332


Q ss_pred             CEEEeecCCCcccc-hhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccC
Q 002432          304 EILSLIESDIVEFP-EELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN  358 (922)
Q Consensus       304 ~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~  358 (922)
                      ......  .+..+. ..|.++.+|+.+.+..+  +..++..+|.++.+|+.+.+..
T Consensus       143 ~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          143 EITIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             EEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred             ccccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence            222211  122221 23555555555555442  3445555555555555555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.14  E-value=1.5e-06  Score=92.94  Aligned_cols=178  Identities=17%  Similarity=0.157  Sum_probs=110.5

Q ss_pred             CcceEEEeecCCCCC---------CCCCC-CCCCccEEEccCCCCc---C----CCCCChHHhhCCCCCcEEEeeCCcCc
Q 002432          207 KKCYAISWIDSSGGE---------LPEGL-ECPQLELLLLSSEHSS---V----DVNIPQRFFTGMRELKVVDLTNMQLF  269 (922)
Q Consensus       207 ~~l~~L~l~~~~~~~---------l~~~~-~~~~Lr~L~l~~~~~~---~----~~~l~~~~~~~l~~Lr~L~L~~~~i~  269 (922)
                      .+++.|.+....+..         +.... ++++|+.|.+......   .    .+. ...++..+++|+.|+++++.-.
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~-L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVD-LSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCB-CHHHHHTCTTCCEEEEECCBTC
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccC-HHHHHhcCCCCcEEEEeCCCCc
Confidence            456777776544321         11112 5678888888654221   0    012 3355688899999999888433


Q ss_pred             cCchhhhccCCCCEEEccCCCCCC--ccccC--CCCcCCEEEeecC--C------Ccccchhh--cCCCCCCEEeccCCC
Q 002432          270 SLPSSIDLLVNLQTLCLDYSTLGD--ITIIG--KLKNLEILSLIES--D------IVEFPEEL--GKLTKLRLLDLTNCF  335 (922)
Q Consensus       270 ~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~--~L~~L~~L~L~~~--~------l~~lp~~i--~~L~~L~~L~l~~~~  335 (922)
                      .+|. + .+.+|+.|++..|.+..  ...+.  .+++|++|+|+.+  .      +..+...+  ..+++|++|++.+|.
T Consensus       186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence            4554 4 37899999999888765  34443  7899999998632  1      22222222  357899999998876


Q ss_pred             CCCc-cCcchh---CCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCC
Q 002432          336 HLKV-IAPNVI---ASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEND  398 (922)
Q Consensus       336 ~l~~-~p~~~l---~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  398 (922)
                       +.. .+.. +   ..+++|++|+|+.|.+...         ........+.++++|+.|+++.|.+
T Consensus       264 -i~~~~~~~-la~a~~~~~L~~LdLs~n~L~d~---------G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          264 -EQNVVVEM-FLESDILPQLETMDISAGVLTDE---------GARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             -THHHHHHH-HHHCSSGGGCSEEECCSSCCBHH---------HHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             -CchHHHHH-HHhCccCCCCCEEECCCCCCChH---------HHHHHHhhcccCCcceEEECCCCcC
Confidence             432 2222 2   3578899999988876530         0012234446678899999987764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.09  E-value=1.8e-06  Score=80.56  Aligned_cols=66  Identities=12%  Similarity=0.213  Sum_probs=38.8

Q ss_pred             CCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhh----hccccEEEEecccccceE
Q 002432          653 PNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKS----LEQLQHLEIRNCTGLQVI  720 (922)
Q Consensus       653 ~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~----l~~L~~L~l~~c~~l~~l  720 (922)
                      ..|+.|++++|.+++.....+ ..+++|++|++++|..+++-.. ..+..    .++|++|+|++|+++++-
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHH
Confidence            357777777776555433332 3567778888888777765321 11222    235777777777666543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.03  E-value=3.6e-06  Score=78.60  Aligned_cols=93  Identities=16%  Similarity=0.259  Sum_probs=61.4

Q ss_pred             CCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCCC-CCC--ccccCCC----CcCCEEEeecC-CCccc
Q 002432          246 NIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYST-LGD--ITIIGKL----KNLEILSLIES-DIVEF  316 (922)
Q Consensus       246 ~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~-l~~--p~~i~~L----~~L~~L~L~~~-~l~~l  316 (922)
                      .+|..... -.+|+.||++++.|+.. -..+..+++|++|+|++|. |++  ...+..+    ++|++|++++| +++.-
T Consensus        52 ~LP~~~~~-~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           52 HLPTGPLD-KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             GSCCCSTT-CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             cCCcccCC-CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence            45543222 34688888888887632 2446778888888888886 665  5666665    36888888877 46621


Q ss_pred             -chhhcCCCCCCEEeccCCCCCCc
Q 002432          317 -PEELGKLTKLRLLDLTNCFHLKV  339 (922)
Q Consensus       317 -p~~i~~L~~L~~L~l~~~~~l~~  339 (922)
                       -..+.++++|++|++++|..++.
T Consensus       131 Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          131 GIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHHhcCCCCCEEECCCCCCCCc
Confidence             13456777788888887766655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.00  E-value=4.1e-06  Score=80.62  Aligned_cols=111  Identities=15%  Similarity=0.096  Sum_probs=68.0

Q ss_pred             HhhCCCCCcEEEeeCC-cCc-----cCchhhhccCCCCEEEccCCCCCC--c----cccCCCCcCCEEEeecCCCcc---
Q 002432          251 FFTGMRELKVVDLTNM-QLF-----SLPSSIDLLVNLQTLCLDYSTLGD--I----TIIGKLKNLEILSLIESDIVE---  315 (922)
Q Consensus       251 ~~~~l~~Lr~L~L~~~-~i~-----~lp~~i~~L~~L~~L~L~~~~l~~--p----~~i~~L~~L~~L~L~~~~l~~---  315 (922)
                      ++...+.|+.|+|++| .+.     .+...+...++|++|+|++|.+..  .    ..+...++|++|+|++|.+..   
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3456677777777777 664     244455566777777777777654  1    334455677777777776662   


Q ss_pred             --cchhhcCCCCCCEEec--cCCCCCCccCc----chhCCCCCCCEEEccCCccc
Q 002432          316 --FPEELGKLTKLRLLDL--TNCFHLKVIAP----NVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       316 --lp~~i~~L~~L~~L~l--~~~~~l~~~p~----~~l~~L~~L~~L~L~~~~~~  362 (922)
                        +...+...++|++|++  ++|. ++.-..    ..+...++|++|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              4455666677777777  5554 443211    12444567777777776553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.78  E-value=2.3e-05  Score=79.20  Aligned_cols=78  Identities=29%  Similarity=0.340  Sum_probs=47.7

Q ss_pred             hCCCCCcEEEeeCCcCccCc---hhhhccCCCCEEEccCCCCCCccccCCCC--cCCEEEeecCCCc-ccc-------hh
Q 002432          253 TGMRELKVVDLTNMQLFSLP---SSIDLLVNLQTLCLDYSTLGDITIIGKLK--NLEILSLIESDIV-EFP-------EE  319 (922)
Q Consensus       253 ~~l~~Lr~L~L~~~~i~~lp---~~i~~L~~L~~L~L~~~~l~~p~~i~~L~--~L~~L~L~~~~l~-~lp-------~~  319 (922)
                      .++++|+.|+|++|.+..++   ..+..+++|++|+|++|.+.....+..+.  +|++|++++|.+. .+|       ..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            45667777777777776543   45566777777777777776643344333  6777777777665 232       12


Q ss_pred             hcCCCCCCEEe
Q 002432          320 LGKLTKLRLLD  330 (922)
Q Consensus       320 i~~L~~L~~L~  330 (922)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            45566666664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.73  E-value=0.00095  Score=72.89  Aligned_cols=60  Identities=15%  Similarity=0.232  Sum_probs=31.8

Q ss_pred             ccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecc
Q 002432          805 KIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFC  869 (922)
Q Consensus       805 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c  869 (922)
                      .++++|+.+.|..+ +..+....|.   ++.+|+.+.|.. .+..++...+.+|++|+.+++.++
T Consensus       308 ~~c~~L~~i~lp~~-v~~I~~~aF~---~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          308 AGCISLKSIDIPEG-ITQILDDAFA---GCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTT---TCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred             cCCCCcCEEEeCCc-ccEehHhHhh---CCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCc
Confidence            44556666666432 3333333332   555666666643 255555555666666666666554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.73  E-value=3.2e-05  Score=74.29  Aligned_cols=109  Identities=14%  Similarity=0.105  Sum_probs=79.7

Q ss_pred             CCCCccEEEccCC-CCcCCC-CCChHHhhCCCCCcEEEeeCCcCcc-----CchhhhccCCCCEEEccCCCCCC------
Q 002432          227 ECPQLELLLLSSE-HSSVDV-NIPQRFFTGMRELKVVDLTNMQLFS-----LPSSIDLLVNLQTLCLDYSTLGD------  293 (922)
Q Consensus       227 ~~~~Lr~L~l~~~-~~~~~~-~l~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~l~~------  293 (922)
                      ..+.|++|++++| .+...+ ......+...+.|++|+|++|.+..     +...+...++|++|+|++|.|..      
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            4567888888877 543100 0112234667889999999998863     45566777889999999999875      


Q ss_pred             ccccCCCCcCCEEEe--ecCCCcc-----cchhhcCCCCCCEEeccCCC
Q 002432          294 ITIIGKLKNLEILSL--IESDIVE-----FPEELGKLTKLRLLDLTNCF  335 (922)
Q Consensus       294 p~~i~~L~~L~~L~L--~~~~l~~-----lp~~i~~L~~L~~L~l~~~~  335 (922)
                      ...+...++|++|++  ++|.+..     +...+...++|++|++++|.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            256777889999999  7888773     45567777899999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.60  E-value=1.4e-05  Score=80.71  Aligned_cols=94  Identities=23%  Similarity=0.266  Sum_probs=60.7

Q ss_pred             EEeeCCcCccCchh----hhccCCCCEEEccCCCCCCc----cccCCCCcCCEEEeecCCCcccchhhcCCC--CCCEEe
Q 002432          261 VDLTNMQLFSLPSS----IDLLVNLQTLCLDYSTLGDI----TIIGKLKNLEILSLIESDIVEFPEELGKLT--KLRLLD  330 (922)
Q Consensus       261 L~L~~~~i~~lp~~----i~~L~~L~~L~L~~~~l~~p----~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~--~L~~L~  330 (922)
                      ++++.|....++..    ..++++|++|+|++|.+...    ..+..+++|++|+|++|+++.+ ..+..+.  +|++|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEE
Confidence            45556644433332    24678888888888888762    3455788888888888888766 3344444  788888


Q ss_pred             ccCCCCCCccCc------chhCCCCCCCEEE
Q 002432          331 LTNCFHLKVIAP------NVIASFTRLEELY  355 (922)
Q Consensus       331 l~~~~~l~~~p~------~~l~~L~~L~~L~  355 (922)
                      +.+|.....+|.      ..+..+++|+.|+
T Consensus       227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            888763333331      2356677777776

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.58  E-value=0.0095  Score=64.85  Aligned_cols=144  Identities=13%  Similarity=0.176  Sum_probs=87.3

Q ss_pred             CccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCc---CccCc-hhhhccCCCCEEEccCCCCCC--ccccCCCCcC
Q 002432          230 QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQ---LFSLP-SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNL  303 (922)
Q Consensus       230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~---i~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L  303 (922)
                      .|+.+.+... ..   .|.+..|.++.+|+.+.+..+.   ++.+. ..|..+.+|+.+.+..+ +..  ...|..+.+|
T Consensus        65 ~L~sI~iP~s-vt---~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L  139 (394)
T 4gt6_A           65 VLTSVQIPDT-VT---EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEEL  139 (394)
T ss_dssp             CCCEEEECTT-CC---EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTC
T ss_pred             cCEEEEECCC-ee---EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccc
Confidence            4777777543 22   5677777888888888887653   44553 35667777777666543 443  3567777788


Q ss_pred             CEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccC
Q 002432          304 EILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDEL  382 (922)
Q Consensus       304 ~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l  382 (922)
                      +.+.+..+ ++.++. .+..+.+|+.+.+..+  +..+...++.. .+|+.+.+......              .....+
T Consensus       140 ~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~~~--------------i~~~af  201 (394)
T 4gt6_A          140 DTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKVTR--------------IGTNAF  201 (394)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTCCE--------------ECTTTT
T ss_pred             ccccccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCcccc--------------cccchh
Confidence            88877643 444433 4677777888777653  66666665544 56777776543221              122445


Q ss_pred             CCCCCCCEEEeeec
Q 002432          383 MPLPRLTTLEIAVE  396 (922)
Q Consensus       383 ~~l~~L~~L~l~~~  396 (922)
                      ..+..+........
T Consensus       202 ~~c~~l~~~~~~~~  215 (394)
T 4gt6_A          202 SECFALSTITSDSE  215 (394)
T ss_dssp             TTCTTCCEEEECCS
T ss_pred             hhccccceeccccc
Confidence            55666666555433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.46  E-value=0.0079  Score=65.09  Aligned_cols=137  Identities=9%  Similarity=0.061  Sum_probs=89.0

Q ss_pred             ccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEe
Q 002432          735 FRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELG  814 (922)
Q Consensus       735 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  814 (922)
                      ..+|+.+.+..  .++.+.... ...+..|+.+.+..  .++.+...                     .+..+.+|+.+.
T Consensus       216 ~~~l~~i~~~~--~~~~i~~~~-f~~~~~L~~i~lp~--~v~~I~~~---------------------aF~~~~~l~~i~  269 (379)
T 4h09_A          216 GKNLKKITITS--GVTTLGDGA-FYGMKALDEIAIPK--NVTSIGSF---------------------LLQNCTALKTLN  269 (379)
T ss_dssp             CSSCSEEECCT--TCCEECTTT-TTTCSSCCEEEECT--TCCEECTT---------------------TTTTCTTCCEEE
T ss_pred             ccccceeeecc--ceeEEcccc-ccCCccceEEEcCC--CccEeCcc---------------------ccceeehhcccc
Confidence            44555555543  233333322 23667777777753  35555432                     235677888888


Q ss_pred             echhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCc-cccccceEeccccc
Q 002432          815 LSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGG-QVHLIKKLELICLN  893 (922)
Q Consensus       815 l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~-~~~sL~~L~i~~c~  893 (922)
                      +..+ +..+....|   ..+++|+.+.+.++.+..++...+.++++|+.+.+.. .++.+..... .+++|+++.|..  
T Consensus       270 l~~~-i~~i~~~aF---~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~--  342 (379)
T 4h09_A          270 FYAK-VKTVPYLLC---SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPK--  342 (379)
T ss_dssp             ECCC-CSEECTTTT---TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCT--
T ss_pred             cccc-ceecccccc---ccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECC--
Confidence            8643 333433443   3778999999988889999988899999999999975 4666655442 378888888743  


Q ss_pred             cccccccCCCC
Q 002432          894 DLEYLWIPNSK  904 (922)
Q Consensus       894 ~L~~l~~~~~~  904 (922)
                      .++.+....|.
T Consensus       343 ~v~~I~~~aF~  353 (379)
T 4h09_A          343 SITLIESGAFE  353 (379)
T ss_dssp             TCCEECTTTTT
T ss_pred             ccCEEchhHhh
Confidence            46777666555

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.32  E-value=0.022  Score=61.58  Aligned_cols=138  Identities=14%  Similarity=0.169  Sum_probs=94.2

Q ss_pred             HhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccc
Q 002432          700 IKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFA  779 (922)
Q Consensus       700 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~  779 (922)
                      +....+|+.+.+..  .++.+..       ..+..+..|+.+.+.+  .++.+.... ...+.+|+.+.+..  +++.++
T Consensus       213 f~~~~~l~~i~~~~--~~~~i~~-------~~f~~~~~L~~i~lp~--~v~~I~~~a-F~~~~~l~~i~l~~--~i~~i~  278 (379)
T 4h09_A          213 FSYGKNLKKITITS--GVTTLGD-------GAFYGMKALDEIAIPK--NVTSIGSFL-LQNCTALKTLNFYA--KVKTVP  278 (379)
T ss_dssp             TTTCSSCSEEECCT--TCCEECT-------TTTTTCSSCCEEEECT--TCCEECTTT-TTTCTTCCEEEECC--CCSEEC
T ss_pred             cccccccceeeecc--ceeEEcc-------ccccCCccceEEEcCC--CccEeCccc-cceeehhccccccc--cceecc
Confidence            45566677766643  3444421       1223467788888865  355554433 23788899988853  566665


Q ss_pred             cccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcC
Q 002432          780 SESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFH  859 (922)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~  859 (922)
                      ..                     .+..+++|+.+.+.++.+..+....|.   .+.+|+.+.|.. .++.++...+.+|+
T Consensus       279 ~~---------------------aF~~c~~L~~i~l~~~~i~~I~~~aF~---~c~~L~~i~lp~-~l~~I~~~aF~~C~  333 (379)
T 4h09_A          279 YL---------------------LCSGCSNLTKVVMDNSAIETLEPRVFM---DCVKLSSVTLPT-ALKTIQVYAFKNCK  333 (379)
T ss_dssp             TT---------------------TTTTCTTCCEEEECCTTCCEECTTTTT---TCTTCCEEECCT-TCCEECTTTTTTCT
T ss_pred             cc---------------------ccccccccccccccccccceehhhhhc---CCCCCCEEEcCc-cccEEHHHHhhCCC
Confidence            43                     346788999999988877777666655   788999999865 47888888889999


Q ss_pred             CCCeEEEecccceEEecC
Q 002432          860 GLENLNLSFCSYKELFSN  877 (922)
Q Consensus       860 ~L~~L~l~~c~l~~l~~~  877 (922)
                      +|+++.+..+ ++.+...
T Consensus       334 ~L~~i~ip~~-v~~I~~~  350 (379)
T 4h09_A          334 ALSTISYPKS-ITLIESG  350 (379)
T ss_dssp             TCCCCCCCTT-CCEECTT
T ss_pred             CCCEEEECCc-cCEEchh
Confidence            9999988654 5555333

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.06  E-value=0.018  Score=51.01  Aligned_cols=55  Identities=16%  Similarity=0.273  Sum_probs=43.2

Q ss_pred             eEeechhhhh-hhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccc
Q 002432          812 ELGLSIKDIM-MLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSY  871 (922)
Q Consensus       812 ~L~l~~~~~~-~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l  871 (922)
                      .++-+++.+. ...|..+     +.+|+.|+|++|.++.+|.+.+..+++|+.|+|++|++
T Consensus        12 ~v~Cs~~~L~~~~vP~~l-----p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF-----PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC-----CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC-----CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            5566666654 1233333     36899999999999999999999999999999999865

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.92  E-value=0.031  Score=49.46  Aligned_cols=51  Identities=25%  Similarity=0.279  Sum_probs=26.9

Q ss_pred             EEEeeCCcCc--cCchhhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCC
Q 002432          260 VVDLTNMQLF--SLPSSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESD  312 (922)
Q Consensus       260 ~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~  312 (922)
                      +++.+++.++  .+|..+.  .+|++|+|++|.|+. + ..|..+.+|++|+|.+|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            4555666655  5554432  245555555555554 2 444555555555555553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.18  E-value=0.05  Score=51.63  Aligned_cols=82  Identities=16%  Similarity=0.176  Sum_probs=46.2

Q ss_pred             hCCCCCcEEEeeCC-cCc-----cCchhhhccCCCCEEEccCCCCCCc------cccCCCCcCCEEEeecCCCc-----c
Q 002432          253 TGMRELKVVDLTNM-QLF-----SLPSSIDLLVNLQTLCLDYSTLGDI------TIIGKLKNLEILSLIESDIV-----E  315 (922)
Q Consensus       253 ~~l~~Lr~L~L~~~-~i~-----~lp~~i~~L~~L~~L~L~~~~l~~p------~~i~~L~~L~~L~L~~~~l~-----~  315 (922)
                      .+-+.|+.|+|+++ .|.     .+-+.+..-..|+.|+|++|.|...      +.+..-+.|++|+|++|.|.     .
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            44456667777664 553     2334455556677777777776531      33334466777777776665     2


Q ss_pred             cchhhcCCCCCCEEeccCC
Q 002432          316 FPEELGKLTKLRLLDLTNC  334 (922)
Q Consensus       316 lp~~i~~L~~L~~L~l~~~  334 (922)
                      +-..+..-+.|++|++++|
T Consensus       118 la~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCC
Confidence            2334444455667766653

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=93.28  E-value=0.91  Score=47.81  Aligned_cols=146  Identities=13%  Similarity=0.102  Sum_probs=83.7

Q ss_pred             ceEeCCCCCHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHH-HHHHHhcCCCCC
Q 002432            5 ANFSIEILNEEEAWRLFEVKLGN--DDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWK-NALHELRMPTEN   81 (922)
Q Consensus         5 ~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~-~~l~~~~~~~~~   81 (922)
                      ..+++.+|+.+|+.+++...++.  ....   .+.+.+|++.|+|.|+++..++..+....+...|. ++.+...     
T Consensus       196 ~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----  267 (350)
T 2qen_A          196 GEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAK-----  267 (350)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----
T ss_pred             ceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHH-----
Confidence            47899999999999999886621  1122   35678999999999999999987654321222221 1211110     


Q ss_pred             CCccchHHHH-HHHHHHHhcCCchhHHHHHhhccccCCCchhH-HHHHHHHhcCCcccccHHHHHHHHHHHHHHHHhhcc
Q 002432           82 NFHRELGKAY-TAIKLSYDALKGEQLKKIFQLCSLMPKSFFAS-DLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCL  159 (922)
Q Consensus        82 ~~~~~~~~~~-~~l~lsY~~L~~~~lk~cfly~~~f~~~~~~~-~Li~~WiaeG~i~~~~~e~~~~~~~~~i~~L~~~~l  159 (922)
                            ..+. .+-.+.+ . ++. .+..+..+|.  +. +.. ++.....+. .- +.+..++    .++++.|++.++
T Consensus       268 ------~~~~~~l~~l~~-~-~~~-~~~~l~~la~--g~-~~~~~l~~~~~~~-~~-~~~~~~~----~~~l~~L~~~gl  329 (350)
T 2qen_A          268 ------GLIMGELEELRR-R-SPR-YVDILRAIAL--GY-NRWSLIRDYLAVK-GT-KIPEPRL----YALLENLKKMNW  329 (350)
T ss_dssp             ------HHHHHHHHHHHH-H-CHH-HHHHHHHHHT--TC-CSHHHHHHHHHHT-TC-CCCHHHH----HHHHHHHHHTTS
T ss_pred             ------HHHHHHHHHHHh-C-Chh-HHHHHHHHHh--CC-CCHHHHHHHHHHH-hC-CCCHHHH----HHHHHHHHhCCC
Confidence                  0011 1112222 2 666 5888888887  32 222 343333221 10 1112222    345889999999


Q ss_pred             eecccccceEEe-cHHHHHH
Q 002432          160 LLEGYSCREFSM-HDVVHDV  178 (922)
Q Consensus       160 ~~~~~~~~~~~m-hdli~dl  178 (922)
                      +...  .+.|.+ |.++++.
T Consensus       330 i~~~--~~~y~~~~p~~~~~  347 (350)
T 2qen_A          330 IVEE--DNTYKIADPVVATV  347 (350)
T ss_dssp             EEEE--TTEEEESSHHHHHH
T ss_pred             EEec--CCEEEEecHHHHHH
Confidence            8765  244555 6676654

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=92.16  E-value=1.2  Score=47.08  Aligned_cols=145  Identities=12%  Similarity=0.137  Sum_probs=84.4

Q ss_pred             ceEeCCCCCHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHH-HHHHHhcCCCCCC
Q 002432            5 ANFSIEILNEEEAWRLFEVKLG-NDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWK-NALHELRMPTENN   82 (922)
Q Consensus         5 ~~~~l~~L~~~~~~~Lf~~~~~-~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~-~~l~~~~~~~~~~   82 (922)
                      ..+++.+|+.+|+.+++...++ .....++.    .+|+++|+|.|+++..++..+....+...|. ++.+.        
T Consensus       202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~--------  269 (357)
T 2fna_A          202 STVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEY--------  269 (357)
T ss_dssp             EEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH--------
T ss_pred             ceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHH--------
Confidence            5789999999999999998652 11111221    8899999999999999998875432333332 11111        


Q ss_pred             CccchHH-HHHHHH-HHHh--cCCchhHHHHHhhccccCCCchhH-HHHHHHH-hcCCcccccHHHHHHHHHHHHHHHHh
Q 002432           83 FHRELGK-AYTAIK-LSYD--ALKGEQLKKIFQLCSLMPKSFFAS-DLFKYCI-GLGIFRGIDMEDARNKLYTLVHELKD  156 (922)
Q Consensus        83 ~~~~~~~-~~~~l~-lsY~--~L~~~~lk~cfly~~~f~~~~~~~-~Li~~Wi-aeG~i~~~~~e~~~~~~~~~i~~L~~  156 (922)
                          ... +...+. +.|+  .+|+. .|..+..+|.  +.  .. .+....- ..|.  +.+..+    ..++++.|++
T Consensus       270 ----~~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~--g~--~~~~l~~~~~~~~g~--~~~~~~----~~~~L~~L~~  334 (357)
T 2fna_A          270 ----AKKLILKEFENFLHGREIARKR-YLNIMRTLSK--CG--KWSDVKRALELEEGI--EISDSE----IYNYLTQLTK  334 (357)
T ss_dssp             ----HHHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTT--CB--CHHHHHHHHHHHHCS--CCCHHH----HHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhhccccccHH-HHHHHHHHHc--CC--CHHHHHHHHHHhcCC--CCCHHH----HHHHHHHHHh
Confidence                111 211222 2221  67777 5888888887  32  22 3322110 1121  011122    3345899999


Q ss_pred             hcceecccccceEEe-cHHHHHH
Q 002432          157 SCLLLEGYSCREFSM-HDVVHDV  178 (922)
Q Consensus       157 ~~l~~~~~~~~~~~m-hdli~dl  178 (922)
                      .+++...+  +.|.+ |.++++.
T Consensus       335 ~gli~~~~--~~y~f~~~~~~~~  355 (357)
T 2fna_A          335 HSWIIKEG--EKYCPSEPLISLA  355 (357)
T ss_dssp             TTSEEESS--SCEEESSHHHHHH
T ss_pred             CCCEEecC--CEEEecCHHHHHh
Confidence            99987652  44654 6777764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.92  E-value=0.37  Score=45.61  Aligned_cols=106  Identities=9%  Similarity=0.051  Sum_probs=67.5

Q ss_pred             CCccEEEccCC-CCcCCC-CCChHHhhCCCCCcEEEeeCCcCc-----cCchhhhccCCCCEEEccCCCCCC--c----c
Q 002432          229 PQLELLLLSSE-HSSVDV-NIPQRFFTGMRELKVVDLTNMQLF-----SLPSSIDLLVNLQTLCLDYSTLGD--I----T  295 (922)
Q Consensus       229 ~~Lr~L~l~~~-~~~~~~-~l~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~--p----~  295 (922)
                      +.|+.|+++++ .+...| ......+..-+.|+.|+|++|.|.     .+-+.+..-+.|++|+|++|.|..  .    +
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            46677777664 322100 011222356678899999998886     345566667789999999999875  1    4


Q ss_pred             ccCCCCcCCEEEeecCC---Cc-----ccchhhcCCCCCCEEeccCC
Q 002432          296 IIGKLKNLEILSLIESD---IV-----EFPEELGKLTKLRLLDLTNC  334 (922)
Q Consensus       296 ~i~~L~~L~~L~L~~~~---l~-----~lp~~i~~L~~L~~L~l~~~  334 (922)
                      .+..-+.|++|+|+++.   +.     .+-..+..-+.|+.|+++.+
T Consensus       121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            56666779999998653   33     23334555667788877654

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=82.95  E-value=3.8  Score=44.16  Aligned_cols=135  Identities=12%  Similarity=0.058  Sum_probs=78.4

Q ss_pred             EeCCCCCHHHHHHHHHHHh---CCC-CCChhhHHHHHHHHHHhC------CCcchHHHHHHHh---h---cC--CCHHHH
Q 002432            7 FSIEILNEEEAWRLFEVKL---GND-DLIPRMKSTATHIVKECG------GLPIAIEPIAKAL---R---NK--TESECW   68 (922)
Q Consensus         7 ~~l~~L~~~~~~~Lf~~~~---~~~-~~~~~~~~~~~~i~~~c~------glPlai~~~g~~L---~---~~--~~~~~W   68 (922)
                      +++++++.++++++|..++   +.. ...   .+....|+++|+      |.|..+..+....   +   ..  -+.+.+
T Consensus       210 i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v  286 (412)
T 1w5s_A          210 LHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLV  286 (412)
T ss_dssp             EECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHH
T ss_pred             eeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence            8999999999999998776   221 122   457888999999      9997655544322   1   11  134445


Q ss_pred             HHHHHHhcCCCCCCCccchHHHHHHHHHHHhcCCchhHHHHHhhcccc-C--CCchhH-HHHHHHH--h---cCCccccc
Q 002432           69 KNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLM-P--KSFFAS-DLFKYCI--G---LGIFRGID  139 (922)
Q Consensus        69 ~~~l~~~~~~~~~~~~~~~~~~~~~l~lsY~~L~~~~lk~cfly~~~f-~--~~~~~~-~Li~~Wi--a---eG~i~~~~  139 (922)
                      ..++....    .         ...+.-+++.||.+ .|.++..+|.+ .  +..+.. ++...|.  +   .|. .+..
T Consensus       287 ~~~~~~~~----~---------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  351 (412)
T 1w5s_A          287 RKAVSENE----A---------ASIQTHELEALSIH-ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPRG  351 (412)
T ss_dssp             HHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCCC
T ss_pred             HHHHHHHh----c---------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCCC
Confidence            44444321    0         22334466789998 58888888865 2  233433 4444442  2   121 1111


Q ss_pred             HHHHHHHHHHHHHHHHhhcceecc
Q 002432          140 MEDARNKLYTLVHELKDSCLLLEG  163 (922)
Q Consensus       140 ~e~~~~~~~~~i~~L~~~~l~~~~  163 (922)
                      ..    .+.+++++|++.+++...
T Consensus       352 ~~----~~~~~l~~L~~~gli~~~  371 (412)
T 1w5s_A          352 YT----QYHIYLKHLTSLGLVDAK  371 (412)
T ss_dssp             HH----HHHHHHHHHHHTTSEEEE
T ss_pred             HH----HHHHHHHHHHhCCCEEee
Confidence            12    233468999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	922
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	8e-12
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 64.5 bits (156), Expect = 8e-12
 Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 9/112 (8%)

Query: 1   MGSEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALR 60
             +     +  L  +E +   E       +  + +      ++   G P  +    K+  
Sbjct: 174 SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCE 233

Query: 61  NKTESECWKNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQL 112
            KT  E      ++L                     SY +L    L++  ++
Sbjct: 234 PKTF-EKMAQLNNKLESRGLVGVEC-------ITPYSYKSL-AMALQRCVEV 276

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 7e-06
 Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 246 NIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEI 305
           N  +        L+ ++++N +L  LP+       L+ L   ++ L ++      +NL+ 
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVP--ELPQNLKQ 328

Query: 306 LSLIESDIVEFPEELGKLTKLRL 328
           L +  + + EFP+    +  LR+
Sbjct: 329 LHVEYNPLREFPDIPESVEDLRM 351

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 8e-06
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 25/128 (19%)

Query: 252 FTGMRELKVVDLTNMQLFSLPSSIDL---------------------LVNLQTLCLDYST 290
            +G+ +L  + L   Q+ ++     L                     L NL  L L ++ 
Sbjct: 259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 318

Query: 291 LGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTR 350
           + DI+ +  L  L+ L    + + +    L  LT +  L   +   +  + P  +A+ TR
Sbjct: 319 ISDISPVSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHN-QISDLTP--LANLTR 374

Query: 351 LEELYMSN 358
           + +L +++
Sbjct: 375 ITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 2/105 (1%)

Query: 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDY 288
           P   L  L++   + +        + ++ L  + L    +  +   +  L  LQ L    
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFAN 338

Query: 289 STLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTN 333
           + + D++ +  L N+  LS   + I +    L  LT++  L L +
Sbjct: 339 NKVSDVSSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLND 382

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 1/102 (0%)

Query: 262 DLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELG 321
           +L   Q+  L   +    +     LD   L     +       +L+   S          
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEE 62

Query: 322 KLTKLRLLDLTNCFHLKVIA-PNVIASFTRLEELYMSNCFVE 362
            + +L  L+L+N    ++    +++     L+ L +S   ++
Sbjct: 63  NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 104

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 5e-04
 Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 16/163 (9%)

Query: 257 ELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI--TIIGKLKNLEILSLIESDIV 314
            L+VV  +++ L  +P  +    +   L L  + + +I       LKNL  L LI + I 
Sbjct: 11  HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 315 EF-PEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVED------ 367
           +  P     L KL  L L+    LK +   +  +   L         V   V +      
Sbjct: 69  KISPGAFAPLVKLERLYLSKN-QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 368 ----EGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFF 406
                 +  K S         + +L+ + IA  N   +P+G  
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP 170

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 14/97 (14%), Positives = 38/97 (39%), Gaps = 12/97 (12%)

Query: 279 VNLQTLCLDYSTLGD---ITIIGKLKNLEILSL-----IESDIVEFPEELGKLTKLRLLD 330
           +++Q+L +    L D     ++  L+  +++ L      E+   +    L     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 331 LTNC----FHLKVIAPNVIASFTRLEELYMSNCFVEW 363
           L +       +  +   +     ++++L + NC +  
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 280 NLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTN 333
            L TL  D + + DI+ +  L NL  + L  + I +    L   + L ++ LTN
Sbjct: 174 KLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	922
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.83
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.82
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.72
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.71
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.69
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.69
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.66
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.65
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.56
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.56
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.55
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.53
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.37
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.36
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.35
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.34
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.34
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.34
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.12
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.89
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.88
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.85
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.72
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.37
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.86
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.54
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.74
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.74
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.14
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.19

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=6.3e-19  Score=192.46  Aligned_cols=99  Identities=22%  Similarity=0.245  Sum_probs=49.6

Q ss_pred             CCCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCC
Q 002432          652 LPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPP  731 (922)
Q Consensus       652 l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~  731 (922)
                      ++.++.+++.+|.++.+..   ...+++++.|+++++ +++.+++   +..+++|++|++++| .++.+.         .
T Consensus       284 ~~~l~~l~~~~n~l~~~~~---~~~~~~l~~L~ls~n-~l~~l~~---l~~l~~L~~L~L~~n-~l~~l~---------~  346 (384)
T d2omza2         284 LTALTNLELNENQLEDISP---ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFANN-KVSDVS---------S  346 (384)
T ss_dssp             CTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCCG---------G
T ss_pred             ccccccccccccccccccc---cchhcccCeEECCCC-CCCCCcc---cccCCCCCEEECCCC-CCCCCh---------h
Confidence            4445555555554443311   123455666666653 4444421   455566666666665 444431         1


Q ss_pred             cccccccceeecccCCCccccCCCcCcCCCCCccEEEEec
Q 002432          732 CFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFS  771 (922)
Q Consensus       732 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~  771 (922)
                      ...+++|++|++++| +++.+++ +  .++++|+.|+|++
T Consensus       347 l~~l~~L~~L~l~~N-~l~~l~~-l--~~l~~L~~L~L~~  382 (384)
T d2omza2         347 LANLTNINWLSAGHN-QISDLTP-L--ANLTRITQLGLND  382 (384)
T ss_dssp             GGGCTTCCEEECCSS-CCCBCGG-G--TTCTTCSEEECCC
T ss_pred             HcCCCCCCEEECCCC-cCCCChh-h--ccCCCCCEeeCCC
Confidence            123556666666554 3444432 2  2566777777665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=8.3e-19  Score=191.49  Aligned_cols=168  Identities=21%  Similarity=0.251  Sum_probs=102.9

Q ss_pred             cccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccCCCC
Q 002432          521 DAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEE  600 (922)
Q Consensus       521 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  600 (922)
                      ..+++|+.|.+.++. ++.++    ....+++|+.|++.+| .++.+++   +..+++|++|+++++. ++.++..    
T Consensus       216 ~~~~~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~l~~n-~l~~~~~---~~~~~~L~~L~l~~~~-l~~~~~~----  281 (384)
T d2omza2         216 GILTNLDELSLNGNQ-LKDIG----TLASLTNLTDLDLANN-QISNLAP---LSGLTKLTELKLGANQ-ISNISPL----  281 (384)
T ss_dssp             GGCTTCCEEECCSSC-CCCCG----GGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSSC-CCCCGGG----
T ss_pred             cccCCCCEEECCCCC-CCCcc----hhhcccccchhccccC-ccCCCCc---ccccccCCEeeccCcc-cCCCCcc----
Confidence            334555666555542 22221    2345667777777776 3444432   4556777777776653 3333221    


Q ss_pred             CCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCcccccCc
Q 002432          601 PDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRL  680 (922)
Q Consensus       601 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L  680 (922)
                                  ..++.++.+.+..+. +..+              .....+++++.|++++|+++.+..   ...+++|
T Consensus       282 ------------~~~~~l~~l~~~~n~-l~~~--------------~~~~~~~~l~~L~ls~n~l~~l~~---l~~l~~L  331 (384)
T d2omza2         282 ------------AGLTALTNLELNENQ-LEDI--------------SPISNLKNLTYLTLYFNNISDISP---VSSLTKL  331 (384)
T ss_dssp             ------------TTCTTCSEEECCSSC-CSCC--------------GGGGGCTTCSEEECCSSCCSCCGG---GGGCTTC
T ss_pred             ------------ccccccccccccccc-cccc--------------cccchhcccCeEECCCCCCCCCcc---cccCCCC
Confidence                        235555555555442 1111              123457888899999988877642   3467899


Q ss_pred             cEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccC
Q 002432          681 TRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHL  746 (922)
Q Consensus       681 ~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c  746 (922)
                      ++|++++| +++.++   .+.++++|++|++++| .++.++         +...+++|+.|+|+++
T Consensus       332 ~~L~L~~n-~l~~l~---~l~~l~~L~~L~l~~N-~l~~l~---------~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         332 QRLFFANN-KVSDVS---SLANLTNINWLSAGHN-QISDLT---------PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CEEECCSS-CCCCCG---GGGGCTTCCEEECCSS-CCCBCG---------GGTTCTTCSEEECCCE
T ss_pred             CEEECCCC-CCCCCh---hHcCCCCCCEEECCCC-cCCCCh---------hhccCCCCCEeeCCCC
Confidence            99999987 677763   3678899999999876 566652         1234788999998864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.72  E-value=2.2e-16  Score=165.53  Aligned_cols=154  Identities=19%  Similarity=0.264  Sum_probs=108.1

Q ss_pred             CccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEE
Q 002432          230 QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEIL  306 (922)
Q Consensus       230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L  306 (922)
                      ..++++.++....   ++|.++   .+.+++|+|++|+|+++|+ +|.++++|++|++++|.+..  |..|.++++|++|
T Consensus        11 ~~~~~~C~~~~L~---~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L   84 (305)
T d1xkua_          11 HLRVVQCSDLGLE---KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL   84 (305)
T ss_dssp             ETTEEECTTSCCC---SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             cCCEEEecCCCCC---ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEe
Confidence            4456666665544   667654   3578888888888888875 67888888888888888776  5678888888888


Q ss_pred             EeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCC
Q 002432          307 SLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLP  386 (922)
Q Consensus       307 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  386 (922)
                      ++++|+++.+|..+  ...++.|++.+|. +..++...+.....++.+....+....           .......+..++
T Consensus        85 ~l~~n~l~~l~~~~--~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~-----------~~~~~~~~~~l~  150 (305)
T d1xkua_          85 YLSKNQLKELPEKM--PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS-----------SGIENGAFQGMK  150 (305)
T ss_dssp             ECCSSCCSBCCSSC--CTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG-----------GGBCTTGGGGCT
T ss_pred             cccCCccCcCccch--hhhhhhhhccccc-hhhhhhhhhhccccccccccccccccc-----------cCCCcccccccc
Confidence            88888888887643  3578888888764 777776666777777777776654432           112334566677


Q ss_pred             CCCEEEeeecCCCCCCc
Q 002432          387 RLTTLEIAVENDNALPE  403 (922)
Q Consensus       387 ~L~~L~l~~~~~~~~~~  403 (922)
                      +|+.+++.++....++.
T Consensus       151 ~L~~l~l~~n~l~~l~~  167 (305)
T d1xkua_         151 KLSYIRIADTNITTIPQ  167 (305)
T ss_dssp             TCCEEECCSSCCCSCCS
T ss_pred             ccCccccccCCccccCc
Confidence            78888877776554443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=9.8e-17  Score=164.17  Aligned_cols=178  Identities=22%  Similarity=0.234  Sum_probs=133.7

Q ss_pred             ceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccC
Q 002432          209 CYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDY  288 (922)
Q Consensus       209 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~  288 (922)
                      ...++.+++.+..+|+.+. +++++|++++|.+.   .+|...|.++++|++|+|++|.++.+|. ++.+++|++|++++
T Consensus        12 ~~~v~C~~~~L~~iP~~lp-~~l~~L~Ls~N~i~---~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          12 HLEVNCDKRNLTALPPDLP-KDTTILHLSENLLY---TFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSH   86 (266)
T ss_dssp             CCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCS---EEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCS
T ss_pred             CeEEEccCCCCCeeCcCcC-cCCCEEECcCCcCC---CcCHHHhhcccccccccccccccccccc-cccccccccccccc
Confidence            3445666667777776442 57888888888765   6777777888888888888888887764 56788888888888


Q ss_pred             CCCCC-ccccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccccc
Q 002432          289 STLGD-ITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVE  366 (922)
Q Consensus       289 ~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~  366 (922)
                      |++.. +..+..+++|++|+++++.+..++. .+..+.++++|++++|. +..+|...+..+++|+.|++++|.+..   
T Consensus        87 N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~l~~---  162 (266)
T d1p9ag_          87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTE---  162 (266)
T ss_dssp             SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSC---
T ss_pred             ccccccccccccccccccccccccccceeeccccccccccccccccccc-cceeccccccccccchhcccccccccc---
Confidence            88877 6778888888888888887776644 45778888888888874 777777767778888888888887763   


Q ss_pred             ccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccc
Q 002432          367 DEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGF  405 (922)
Q Consensus       367 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  405 (922)
                                .....++.+++|++|++++|.+..+|..+
T Consensus       163 ----------~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~  191 (266)
T d1p9ag_         163 ----------LPAGLLNGLENLDTLLLQENSLYTIPKGF  191 (266)
T ss_dssp             ----------CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ----------cCccccccccccceeecccCCCcccChhH
Confidence                      33455777888888888888877777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.4e-16  Score=162.89  Aligned_cols=187  Identities=18%  Similarity=0.163  Sum_probs=161.7

Q ss_pred             ecCCCCCCCCCccccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc
Q 002432          192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF  269 (922)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~  269 (922)
                      ..+.++..+|. ++++++++|++++|.+..++.. + ++++|+.|++++|.+.   .++.  ++.+++|++|++++|+++
T Consensus        17 C~~~~L~~iP~-~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~---~l~~--~~~l~~L~~L~Ls~N~l~   90 (266)
T d1p9ag_          17 CDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQV--DGTLPVLGTLDLSHNQLQ   90 (266)
T ss_dssp             CTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC---EEEC--CSCCTTCCEEECCSSCCS
T ss_pred             ccCCCCCeeCc-CcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccc---cccc--cccccccccccccccccc
Confidence            44456666654 4567899999999999888754 3 8999999999999875   5653  478999999999999999


Q ss_pred             cCchhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhC
Q 002432          270 SLPSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIA  346 (922)
Q Consensus       270 ~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~  346 (922)
                      ..|..+..+++|++|+++++.+..  +..+..+.++++|++++|.++.+|.. +..+++|++|++++|. +..++.+.++
T Consensus        91 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~-l~~~~~~~~~  169 (266)
T d1p9ag_          91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLN  169 (266)
T ss_dssp             SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTT
T ss_pred             ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc-ccccCccccc
Confidence            999999999999999999999887  57888999999999999999988765 5789999999999986 8899888799


Q ss_pred             CCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432          347 SFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN  399 (922)
Q Consensus       347 ~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  399 (922)
                      .+++|++|+|++|.+.              ..+.++..+++|+.|++++|...
T Consensus       170 ~l~~L~~L~Ls~N~L~--------------~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         170 GLENLDTLLLQENSLY--------------TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TCTTCCEEECCSSCCC--------------CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccceeecccCCCc--------------ccChhHCCCCCCCEEEecCCCCC
Confidence            9999999999999987              45677788999999999998743

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=1.1e-15  Score=160.26  Aligned_cols=99  Identities=22%  Similarity=0.342  Sum_probs=43.9

Q ss_pred             CccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEE
Q 002432          230 QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILS  307 (922)
Q Consensus       230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~  307 (922)
                      ++++|++++|.+.   .+|+..|.++++|++|++++|.+..+ |..|.++++|++|++++|+++. |..  ....|+.|+
T Consensus        32 ~l~~L~Ls~N~i~---~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~--~~~~l~~L~  106 (305)
T d1xkua_          32 DTALLDLQNNKIT---EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELR  106 (305)
T ss_dssp             TCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS--CCTTCCEEE
T ss_pred             CCCEEECcCCcCC---CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc--hhhhhhhhh
Confidence            4444444444433   34443344444555555555444444 2344444555555555544444 322  123444444


Q ss_pred             eecCCCcccchh-hcCCCCCCEEeccC
Q 002432          308 LIESDIVEFPEE-LGKLTKLRLLDLTN  333 (922)
Q Consensus       308 L~~~~l~~lp~~-i~~L~~L~~L~l~~  333 (922)
                      +.+|.+..++.. +.....++.++...
T Consensus       107 ~~~n~l~~l~~~~~~~~~~~~~l~~~~  133 (305)
T d1xkua_         107 VHENEITKVRKSVFNGLNQMIVVELGT  133 (305)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred             ccccchhhhhhhhhhcccccccccccc
Confidence            444444444332 23344444444443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.66  E-value=2.9e-16  Score=165.29  Aligned_cols=114  Identities=18%  Similarity=0.301  Sum_probs=62.0

Q ss_pred             CChHHhhCCCCCcEEEeeC-CcCc-cCchhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCc-ccchhhc
Q 002432          247 IPQRFFTGMRELKVVDLTN-MQLF-SLPSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIV-EFPEELG  321 (922)
Q Consensus       247 l~~~~~~~l~~Lr~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~-~lp~~i~  321 (922)
                      +|.++ +++++|++|+|++ |.+. .+|.+|++|++|++|+|++|++..  +..+..+.+|+++++++|.+. .+|..++
T Consensus        68 lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~  146 (313)
T d1ogqa_          68 IPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             CCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             CChHH-hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhc
Confidence            44444 5566666666654 4444 455556666666666666665554  344555566666666655433 4455566


Q ss_pred             CCCCCCEEeccCCCCCCccCcchhCCCCCC-CEEEccCCccc
Q 002432          322 KLTKLRLLDLTNCFHLKVIAPNVIASFTRL-EELYMSNCFVE  362 (922)
Q Consensus       322 ~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L-~~L~L~~~~~~  362 (922)
                      ++++|+++++++|...+.+|.. ++++.++ +.+++++|.+.
T Consensus       147 ~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         147 SLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEE
T ss_pred             cCcccceeeccccccccccccc-ccccccccccccccccccc
Confidence            6666666666655433344444 4555443 55555555554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.65  E-value=1.8e-16  Score=166.83  Aligned_cols=173  Identities=17%  Similarity=0.231  Sum_probs=112.6

Q ss_pred             CcceEEEeecCCCC---CCCCCC-CCCCccEEEccC-CCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCC
Q 002432          207 KKCYAISWIDSSGG---ELPEGL-ECPQLELLLLSS-EHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVN  280 (922)
Q Consensus       207 ~~l~~L~l~~~~~~---~l~~~~-~~~~Lr~L~l~~-~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~  280 (922)
                      .+++.|++.++.+.   .+|+.+ ++++|++|++++ |...  +.+|..+ +++++|++|++++|.+..+ |..+..+.+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~--g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV--GPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE--SCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccc--ccccccc-ccccccchhhhccccccccccccccchhh
Confidence            35777777777664   355555 777777777775 4333  3577664 7777777777777777754 455777777


Q ss_pred             CCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCc-ccchhhcCCCCC-CEEeccCCCCCCccCcchhCCCCCCCEEEc
Q 002432          281 LQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIV-EFPEELGKLTKL-RLLDLTNCFHLKVIAPNVIASFTRLEELYM  356 (922)
Q Consensus       281 L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L-~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L  356 (922)
                      |+++++++|.+..  |..++++++|+++++++|.+. .+|..+..+..+ +.+++++|. +...++..++++..+ .+++
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~-l~~~~~~~~~~l~~~-~l~l  204 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANLNLA-FVDL  204 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGGCCCS-EEEC
T ss_pred             hcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccc-ccccccccccccccc-cccc
Confidence            7777777777543  677777777777777777766 667777777665 667777765 444333335655444 5666


Q ss_pred             cCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecC
Q 002432          357 SNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEN  397 (922)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  397 (922)
                      ..+....             ..+..+..+++++.+++.++.
T Consensus       205 ~~~~~~~-------------~~~~~~~~~~~l~~l~~~~~~  232 (313)
T d1ogqa_         205 SRNMLEG-------------DASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             CSSEEEE-------------CCGGGCCTTSCCSEEECCSSE
T ss_pred             ccccccc-------------ccccccccccccccccccccc
Confidence            6665543             444556666777777766554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.64  E-value=2.2e-14  Score=153.77  Aligned_cols=118  Identities=25%  Similarity=0.288  Sum_probs=57.2

Q ss_pred             CCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCC
Q 002432          256 RELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCF  335 (922)
Q Consensus       256 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~  335 (922)
                      ++|++|++++|+++++|+.+   .+|+.|++++|.++....+.  +.|++|++++|.++.+|. ++++++|++|+++++.
T Consensus        58 ~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_          58 PHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             TTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhhc--cccccccccccccccccc-hhhhccceeecccccc
Confidence            34555555555555555433   34555555555544422111  245566666665555553 4555666666665543


Q ss_pred             CCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432          336 HLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN  399 (922)
Q Consensus       336 ~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  399 (922)
                       +...+..    ...+..+.+.++...               ....++.++.++.|.+..+...
T Consensus       132 -~~~~~~~----~~~l~~l~~~~~~~~---------------~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         132 -LKKLPDL----PPSLEFIAAGNNQLE---------------ELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             -CSCCCCC----CTTCCEEECCSSCCS---------------SCCCCTTCTTCCEEECCSSCCS
T ss_pred             -ccccccc----cccccchhhcccccc---------------ccccccccccceeccccccccc
Confidence             3333321    234444544433221               1234455555666665555433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=2.7e-15  Score=146.89  Aligned_cols=165  Identities=27%  Similarity=0.335  Sum_probs=142.3

Q ss_pred             cCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEE
Q 002432          206 LKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLC  285 (922)
Q Consensus       206 ~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~  285 (922)
                      +.++++|.+.++.+..++....+++|++|++++|.+.   .++.  ++.+++|++|++++|.++.+| .+..+++|++|+
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~---~l~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT---DIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCcccc---Cccc--cccCccccccccccccccccc-cccccccccccc
Confidence            5678999999999888876558999999999999765   5553  488999999999999999887 488999999999


Q ss_pred             ccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccc
Q 002432          286 LDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKV  365 (922)
Q Consensus       286 L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~  365 (922)
                      +++|.+..+..+..+++|+.+++++|.++..+ .+.++++|+++++++|. +..++.  ++++++|++|++++|.+..  
T Consensus       119 l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~-l~~i~~--l~~l~~L~~L~Ls~N~i~~--  192 (210)
T d1h6ta2         119 LEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISD--  192 (210)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCB--
T ss_pred             cccccccccccccccccccccccccccccccc-ccccccccccccccccc-cccccc--ccCCCCCCEEECCCCCCCC--
Confidence            99999888778899999999999999988764 57889999999999986 777765  8999999999999998762  


Q ss_pred             cccCCcccccccCcccCCCCCCCCEEEeee
Q 002432          366 EDEGSSSKKSKASLDELMPLPRLTTLEIAV  395 (922)
Q Consensus       366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  395 (922)
                                   +..+..+++|+.|++++
T Consensus       193 -------------l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 -------------LRALAGLKNLDVLELFS  209 (210)
T ss_dssp             -------------CGGGTTCTTCSEEEEEE
T ss_pred             -------------ChhhcCCCCCCEEEccC
Confidence                         35688999999999975

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.8e-15  Score=153.23  Aligned_cols=197  Identities=24%  Similarity=0.290  Sum_probs=166.2

Q ss_pred             EEecCCCCCCCCCccccCcceEEEeecCCCCCCCCCC--CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEee-CC
Q 002432          190 FLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGL--ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLT-NM  266 (922)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~-~~  266 (922)
                      +...+.++..+|. .++..++.|++++|.+..++...  ++++|++|++++|...   .++...+..+..++.++.. .+
T Consensus        16 v~c~~~~L~~iP~-~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~---~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          16 TSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA---RIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSCT
T ss_pred             EEcCCCCCCccCC-CCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccc---cccccccccccccccccccccc
Confidence            4445556666665 56788999999999999998743  8999999999999876   6777777889999998875 45


Q ss_pred             cCccC-chhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCccCc
Q 002432          267 QLFSL-PSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAP  342 (922)
Q Consensus       267 ~i~~l-p~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~  342 (922)
                      .++.+ |..+.++++|++|++++|.+..  +..+....+|+++++++|.++.+|. .+..+++|++|++++|. +..+++
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~  170 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPE  170 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc-ccccch
Confidence            66777 5679999999999999999876  4778889999999999999998865 47889999999999985 899988


Q ss_pred             chhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCcc
Q 002432          343 NVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEG  404 (922)
Q Consensus       343 ~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  404 (922)
                      ..+.++++|+++++++|.+..             ..+..+..+++|++|+++.|....++..
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~-------------i~~~~f~~l~~L~~L~l~~N~i~~~~~~  219 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAH-------------VHPHAFRDLGRLMTLYLFANNLSALPTE  219 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCE-------------ECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred             hhhccccccchhhhhhccccc-------------cChhHhhhhhhccccccccccccccccc
Confidence            889999999999999998875             4467889999999999999998877754

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=3.1e-15  Score=145.18  Aligned_cols=161  Identities=23%  Similarity=0.268  Sum_probs=116.7

Q ss_pred             cCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEE
Q 002432          206 LKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLC  285 (922)
Q Consensus       206 ~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~  285 (922)
                      ..+++.|++.++.+..++....+++|++|++++|...   .+++  |+++++|++|++++|.+..+|. +.++++|++|+
T Consensus        39 l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~---~~~~--l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT---DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCCccccccCCCcCcCcccccccc---Cccc--ccCCcccccccccccccccccc-ccccccccccc
Confidence            4677888888888777765447778888888887654   4443  5778888888888887777764 77778888888


Q ss_pred             ccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccc
Q 002432          286 LDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKV  365 (922)
Q Consensus       286 L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~  365 (922)
                      +++|.+.....+..+++|++|++++|++..+| .+..+++|++|++.+|. +..++.  ++++++|++|++++|.+..  
T Consensus       113 l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~-l~~l~~--l~~l~~L~~L~ls~N~i~~--  186 (199)
T d2omxa2         113 LFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQ-VTDLKP--LANLTTLERLDISSNKVSD--  186 (199)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCC--
T ss_pred             ccccccccccccchhhhhHHhhhhhhhhcccc-ccccccccccccccccc-ccCCcc--ccCCCCCCEEECCCCCCCC--
Confidence            88777766666777888888888888777665 47777888888888774 666654  7778888888888776652  


Q ss_pred             cccCCcccccccCcccCCCCCCCCEE
Q 002432          366 EDEGSSSKKSKASLDELMPLPRLTTL  391 (922)
Q Consensus       366 ~~~~~~~~~~~~~~~~l~~l~~L~~L  391 (922)
                                   +..++.+++|++|
T Consensus       187 -------------i~~l~~L~~L~~L  199 (199)
T d2omxa2         187 -------------ISVLAKLTNLESL  199 (199)
T ss_dssp             -------------CGGGGGCTTCSEE
T ss_pred             -------------CccccCCCCCCcC
Confidence                         3446666676664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=3.5e-15  Score=144.83  Aligned_cols=161  Identities=24%  Similarity=0.312  Sum_probs=137.1

Q ss_pred             CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEE
Q 002432          227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEIL  306 (922)
Q Consensus       227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L  306 (922)
                      ++.+++.|+++++.+.   .+..  ++.+++|++|++++|+++.++. ++++++|++|++++|.+.....++++++|++|
T Consensus        38 ~l~~l~~L~l~~~~i~---~l~~--l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIK---SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCC---CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCC---Cccc--cccCCCcCcCccccccccCccc-ccCCcccccccccccccccccccccccccccc
Confidence            5789999999999875   5543  4889999999999999998875 99999999999999999886679999999999


Q ss_pred             EeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCC
Q 002432          307 SLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLP  386 (922)
Q Consensus       307 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  386 (922)
                      +++++.+..++ .+.++++|+.|++++|. +..++.  +..+++|++|++.+|.+..               +..+++++
T Consensus       112 ~l~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~--l~~~~~L~~L~l~~n~l~~---------------l~~l~~l~  172 (199)
T d2omxa2         112 TLFNNQITDID-PLKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLNFSSNQVTD---------------LKPLANLT  172 (199)
T ss_dssp             ECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSSCCCC---------------CGGGTTCT
T ss_pred             ccccccccccc-ccchhhhhHHhhhhhhh-hccccc--ccccccccccccccccccC---------------CccccCCC
Confidence            99999887764 58899999999999986 777764  8999999999999998763               35688999


Q ss_pred             CCCEEEeeecCCCCCCccccccccce
Q 002432          387 RLTTLEIAVENDNALPEGFFVRELER  412 (922)
Q Consensus       387 ~L~~L~l~~~~~~~~~~~~~~~~L~~  412 (922)
                      +|++|++++|....++.-..+++|+.
T Consensus       173 ~L~~L~ls~N~i~~i~~l~~L~~L~~  198 (199)
T d2omxa2         173 TLERLDISSNKVSDISVLAKLTNLES  198 (199)
T ss_dssp             TCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred             CCCEEECCCCCCCCCccccCCCCCCc
Confidence            99999999999887764335555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=9.7e-15  Score=150.88  Aligned_cols=173  Identities=18%  Similarity=0.214  Sum_probs=137.7

Q ss_pred             EEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccCC
Q 002432          211 AISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYS  289 (922)
Q Consensus       211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~  289 (922)
                      .+...++.+..+|..+. +.+++|++++|.+.   .+|...|.++++|++|+++++.+..++ ..+..+..++.++...+
T Consensus        15 ~v~c~~~~L~~iP~~ip-~~~~~L~Ls~N~i~---~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP-AASQRIFLHGNRIS---HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCSSCCTTCC-TTCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCCccCCCCC-CCCCEEECcCCcCC---CCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            34566667777876542 57899999999876   788877899999999999999998764 45677888888877644


Q ss_pred             -CCCC--ccccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccc
Q 002432          290 -TLGD--ITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKV  365 (922)
Q Consensus       290 -~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~  365 (922)
                       .+..  +..|.++++|++|++++|.+..++. .+....+|+.+++++|. ++.+|.+.++.+++|++|++++|.+..  
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~~--  167 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISS--  167 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCE--
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCcccc--
Confidence             4665  5788999999999999998886654 46788899999999985 888887778889999999999998764  


Q ss_pred             cccCCcccccccCcccCCCCCCCCEEEeeecCCCCC
Q 002432          366 EDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL  401 (922)
Q Consensus       366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  401 (922)
                                 .....+..+++|+.+.+++|....+
T Consensus       168 -----------l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         168 -----------VPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             -----------ECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             -----------cchhhhccccccchhhhhhcccccc
Confidence                       3346778889999999988876543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.56  E-value=4.1e-13  Score=143.62  Aligned_cols=137  Identities=19%  Similarity=0.255  Sum_probs=101.8

Q ss_pred             cceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEcc
Q 002432          208 KCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLD  287 (922)
Q Consensus       208 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~  287 (922)
                      ++++|+++++.+..+|+.  .++|++|++++|.+.   .+|+.    +.+|+.|++++|.++.++.-.   ..|++|+++
T Consensus        39 ~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~---~lp~~----~~~L~~L~l~~n~l~~l~~lp---~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL--PPHLESLVASCNSLT---ELPEL----PQSLKSLLVDNNNLKALSDLP---PLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCS---SCCCC----CTTCCEEECCSSCCSCCCSCC---TTCCEEECC
T ss_pred             CCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCc---ccccc----hhhhhhhhhhhcccchhhhhc---ccccccccc
Confidence            467888888888888864  468999999988776   67743    468899999999888776421   368999999


Q ss_pred             CCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432          288 YSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       288 ~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      +|.+...+.++.+++|++|+++++.+...|..   ...+..+.+..+. ..... . ++.++.++.|++.++...
T Consensus       107 ~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~-~~~~~-~-l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         107 NNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQ-LEELP-E-LQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             SSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCC-C-CTTCTTCCEEECCSSCCS
T ss_pred             ccccccccchhhhccceeeccccccccccccc---cccccchhhcccc-ccccc-c-ccccccceeccccccccc
Confidence            99988844578899999999998888766643   4556677776654 22222 2 778888888888877654

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.56  E-value=2.2e-16  Score=161.08  Aligned_cols=100  Identities=15%  Similarity=0.133  Sum_probs=85.7

Q ss_pred             ceEeCCCCCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCCCc
Q 002432            5 ANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTENNFH   84 (922)
Q Consensus         5 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~~~l~~~~~~~~~~~~   84 (922)
                      ++|++++|+.+|||+||+++|+....++..++++++||++|+|+||||+++|+.|+.+ +.+.|.++.+.+.    .   
T Consensus       178 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k-~~~~~~~~~~~L~----~---  249 (277)
T d2a5yb3         178 EFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TFEKMAQLNNKLE----S---  249 (277)
T ss_dssp             EEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SHHHHHHHHHHHH----H---
T ss_pred             ceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCHHHHHHHHHHhccC-CHHHHHHHHHHHh----c---
Confidence            6799999999999999999996555566779999999999999999999999999988 7889999888775    1   


Q ss_pred             cchHHHHHHHHHHHhcCCchhHHHHHhhc
Q 002432           85 RELGKAYTAIKLSYDALKGEQLKKIFQLC  113 (922)
Q Consensus        85 ~~~~~~~~~l~lsY~~L~~~~lk~cfly~  113 (922)
                      ....++++++.+||++||++ +|+||-++
T Consensus       250 ~~~~~v~~il~~sY~~L~~~-lk~c~~~l  277 (277)
T d2a5yb3         250 RGLVGVECITPYSYKSLAMA-LQRCVEVL  277 (277)
T ss_dssp             HCSSTTCCCSSSSSSSHHHH-HHHHHHTS
T ss_pred             CcHHHHHHHHHHHHhcccHH-HHHHHHhC
Confidence            12334888999999999999 99999863

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=5.1e-14  Score=137.65  Aligned_cols=164  Identities=20%  Similarity=0.257  Sum_probs=138.4

Q ss_pred             CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEE
Q 002432          227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEIL  306 (922)
Q Consensus       227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L  306 (922)
                      ++..|+.|+++++.+.   .++.  +..+++|++|++++|.++.++. ++.+++|++|++++|+++.++.+..+++|++|
T Consensus        44 ~L~~L~~L~l~~~~i~---~l~~--l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIK---SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCC---CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCC---Cchh--HhhCCCCCEEeCCCccccCccc-cccCcccccccccccccccccccccccccccc
Confidence            4678999999999765   4543  4889999999999999999874 78999999999999999996679999999999


Q ss_pred             EeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCC
Q 002432          307 SLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLP  386 (922)
Q Consensus       307 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  386 (922)
                      ++++|.+..++ .+.++++|+.+++++|. +...+.  ++++++|+++++++|.+..               +..+.+++
T Consensus       118 ~l~~~~~~~~~-~l~~l~~l~~l~~~~n~-l~~~~~--~~~l~~L~~l~l~~n~l~~---------------i~~l~~l~  178 (210)
T d1h6ta2         118 SLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD---------------IVPLAGLT  178 (210)
T ss_dssp             ECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCC---------------CGGGTTCT
T ss_pred             ccccccccccc-ccccccccccccccccc-cccccc--ccccccccccccccccccc---------------cccccCCC
Confidence            99999888775 58999999999999985 776654  7889999999999998763               34588999


Q ss_pred             CCCEEEeeecCCCCCCccccccccceeEE
Q 002432          387 RLTTLEIAVENDNALPEGFFVRELERFKI  415 (922)
Q Consensus       387 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~~  415 (922)
                      +|++|++++|.+..++.-..+++|+.|.+
T Consensus       179 ~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L  207 (210)
T d1h6ta2         179 KLQNLYLSKNHISDLRALAGLKNLDVLEL  207 (210)
T ss_dssp             TCCEEECCSSCCCBCGGGTTCTTCSEEEE
T ss_pred             CCCEEECCCCCCCCChhhcCCCCCCEEEc
Confidence            99999999999887764335666666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=1.1e-13  Score=137.47  Aligned_cols=186  Identities=19%  Similarity=0.243  Sum_probs=147.8

Q ss_pred             ccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEE
Q 002432          205 ALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTL  284 (922)
Q Consensus       205 ~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L  284 (922)
                      ...+++.|++.+|.+..++....+++|+.|++++|.+.   .+++  |.++++|+++++++|.++.++ .+.++++|+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~---~~~~--l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT---DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred             HcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceee---cccc--ccccccccccccccccccccc-ccccccccccc
Confidence            35678999999999988876558999999999998765   4443  688999999999999988875 48889999999


Q ss_pred             EccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccc
Q 002432          285 CLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWK  364 (922)
Q Consensus       285 ~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~  364 (922)
                      +++++.......+.....++.+.++++.+...+ .+.+.++|++|++++|. +...+.  ++++++|++|++++|.+.. 
T Consensus       113 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~-~~~~~~--l~~l~~L~~L~Ls~n~l~~-  187 (227)
T d1h6ua2         113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKISD-  187 (227)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCC-
T ss_pred             ccccccccccchhccccchhhhhchhhhhchhh-hhccccccccccccccc-cccchh--hcccccceecccCCCccCC-
Confidence            999988877777888899999999888777553 47788899999998875 655544  7889999999999887652 


Q ss_pred             ccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccccccccceeEE
Q 002432          365 VEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKI  415 (922)
Q Consensus       365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~  415 (922)
                                    +..++.+++|++|++++|....++..-.+++|+.+.+
T Consensus       188 --------------l~~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~l  224 (227)
T d1h6ua2         188 --------------ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL  224 (227)
T ss_dssp             --------------CGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEE
T ss_pred             --------------ChhhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEe
Confidence                          3457788899999999988777765335555655543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=3.9e-13  Score=133.37  Aligned_cols=179  Identities=23%  Similarity=0.298  Sum_probs=151.2

Q ss_pred             ecCCCCCCCCCccccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC
Q 002432          192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL  271 (922)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l  271 (922)
                      ..+.++..++.....+++++|++++|.+..+++...+++++.+++++|...   .++.  |.++++|++++++++....+
T Consensus        48 l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~---~i~~--l~~l~~L~~l~l~~~~~~~~  122 (227)
T d1h6ua2          48 AFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK---NVSA--IAGLQSIKTLDLTSTQITDV  122 (227)
T ss_dssp             CTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS---CCGG--GTTCTTCCEEECTTSCCCCC
T ss_pred             CCCCCCCcchhHhcCCCCcEeecCCceeecccccccccccccccccccccc---cccc--cccccccccccccccccccc
Confidence            444455556666778999999999999988877779999999999998765   5543  58999999999999988766


Q ss_pred             chhhhccCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCC
Q 002432          272 PSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRL  351 (922)
Q Consensus       272 p~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L  351 (922)
                      +. +.....++++.++.+.+.....+.+.++|++|++++|.++..+ .++++++|++|++++|. ++.++.  ++++++|
T Consensus       123 ~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~-l~~l~~--l~~l~~L  197 (227)
T d1h6ua2         123 TP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNK-ISDISP--LASLPNL  197 (227)
T ss_dssp             GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGG--GGGCTTC
T ss_pred             ch-hccccchhhhhchhhhhchhhhhccccccccccccccccccch-hhcccccceecccCCCc-cCCChh--hcCCCCC
Confidence            44 6678899999999999888666888999999999999888765 48999999999999985 888875  8999999


Q ss_pred             CEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeee
Q 002432          352 EELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAV  395 (922)
Q Consensus       352 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  395 (922)
                      ++|++++|++..               +..++++++|+.|+++.
T Consensus       198 ~~L~Ls~N~lt~---------------i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         198 IEVHLKNNQISD---------------VSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             CEEECTTSCCCB---------------CGGGTTCTTCCEEEEEE
T ss_pred             CEEECcCCcCCC---------------CcccccCCCCCEEEeeC
Confidence            999999998763               34588999999999974

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=9.5e-14  Score=122.04  Aligned_cols=101  Identities=23%  Similarity=0.256  Sum_probs=59.6

Q ss_pred             cEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCC
Q 002432          259 KVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHL  337 (922)
Q Consensus       259 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l  337 (922)
                      |+|+|++|+++.+|. ++.+.+|++|++++|.++. |+.++.+++|++|++++|.++.+| +++++++|++|++++|. +
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~-i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-L   77 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-C
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCc-c
Confidence            456666666665543 5566666666666666655 555666666666666666666554 35666666666666654 5


Q ss_pred             CccCc-chhCCCCCCCEEEccCCccc
Q 002432          338 KVIAP-NVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       338 ~~~p~-~~l~~L~~L~~L~L~~~~~~  362 (922)
                      ..++. ..++.+++|+.|++++|.+.
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCC
Confidence            54442 23556666666666666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=2.2e-13  Score=119.65  Aligned_cols=117  Identities=18%  Similarity=0.236  Sum_probs=96.0

Q ss_pred             cEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEEEeecC
Q 002432          232 ELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIES  311 (922)
Q Consensus       232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~  311 (922)
                      |+|++++|...   .++.  +..+++|++|++++|.++.+|+.++.+++|++|++++|.++.++.++++++|++|++++|
T Consensus         1 R~L~Ls~n~l~---~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT---VLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS---SCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC---CCcc--cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCC
Confidence            67888888776   5654  588999999999999999999889999999999999999998667999999999999999


Q ss_pred             CCcccc--hhhcCCCCCCEEeccCCCCCCcc---CcchhCCCCCCCEE
Q 002432          312 DIVEFP--EELGKLTKLRLLDLTNCFHLKVI---APNVIASFTRLEEL  354 (922)
Q Consensus       312 ~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~---p~~~l~~L~~L~~L  354 (922)
                      +++.+|  ..++++++|++|++++|. +...   +...+..+++|+.|
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~-i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCc-CCcCccHHHHHHHHCcCcceE
Confidence            998776  358899999999999985 5443   33334456777665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.6e-14  Score=128.63  Aligned_cols=110  Identities=19%  Similarity=0.163  Sum_probs=80.6

Q ss_pred             hhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEe
Q 002432          252 FTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLD  330 (922)
Q Consensus       252 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~  330 (922)
                      |.+...+|.|+|++|+|+.+|..+..+.+|++|++++|.|+..+.+..+++|++|++++|+++.+|.+ +..+++|++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            35666778888888888777766667777888888888777755677778888888888887777655 35677888888


Q ss_pred             ccCCCCCCccCc-chhCCCCCCCEEEccCCccc
Q 002432          331 LTNCFHLKVIAP-NVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       331 l~~~~~l~~~p~-~~l~~L~~L~~L~L~~~~~~  362 (922)
                      +++|. +..++. ..+..+++|++|++++|.+.
T Consensus        94 L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          94 LTNNS-LVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ecccc-ccccccccccccccccchhhcCCCccc
Confidence            88775 666653 33677788888888877765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.2e-13  Score=127.94  Aligned_cols=124  Identities=19%  Similarity=0.185  Sum_probs=87.6

Q ss_pred             CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-c-cccCCCCcC
Q 002432          226 LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNL  303 (922)
Q Consensus       226 ~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L  303 (922)
                      .+..++|.|++++|.+.   .++ ..+..+++|++|++++|.|+.++ .+..+++|++|++++|.+.. + ..+..+++|
T Consensus        15 ~n~~~lr~L~L~~n~I~---~i~-~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP---VIE-NLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             ECTTSCEEEECTTSCCC---SCC-CGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCcCcCcEEECCCCCCC---ccC-ccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            35566777777777665   554 34466778888888888887774 47777888888888888776 4 335667888


Q ss_pred             CEEEeecCCCcccch--hhcCCCCCCEEeccCCCCCCccCc---chhCCCCCCCEEE
Q 002432          304 EILSLIESDIVEFPE--ELGKLTKLRLLDLTNCFHLKVIAP---NVIASFTRLEELY  355 (922)
Q Consensus       304 ~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~---~~l~~L~~L~~L~  355 (922)
                      ++|++++|+++.++.  .+..+++|++|++++|. +...|.   ..++.+++|+.|+
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeC
Confidence            888888887776653  46777888888888875 555552   2366777887776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.5e-12  Score=130.74  Aligned_cols=208  Identities=17%  Similarity=0.147  Sum_probs=139.0

Q ss_pred             CCCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCC
Q 002432          652 LPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPP  731 (922)
Q Consensus       652 l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~  731 (922)
                      ++++++|++++|.++.++...+ ..+++|++|+++++.....+ +...+.+++.++++.+..|+++..+...       .
T Consensus        28 ~~~l~~L~Ls~n~i~~l~~~~f-~~l~~L~~L~ls~n~~~~~i-~~~~f~~l~~l~~l~~~~~n~l~~~~~~-------~   98 (242)
T d1xwdc1          28 PRNAIELRFVLTKLRVIQKGAF-SGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNLLYINPE-------A   98 (242)
T ss_dssp             CSCCSEEEEESCCCCEECTTTT-TTCTTCCEEEEESCTTCCEE-CSSSEESCTTCCEEEEECCTTCCEECTT-------S
T ss_pred             CCCCCEEECcCCcCCccChhHh-hccchhhhhhhcccccccee-eccccccccccccccccccccccccccc-------c
Confidence            3578889999888888765543 45788999999887655544 3345677888899888888777776421       2


Q ss_pred             cccccccceeecccCCCccccCCCcCcCCCCCccEEEE--ecCCCccccccccccccccccccccCCCCCcceeecc-cc
Q 002432          732 CFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEV--FSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKI-FP  808 (922)
Q Consensus       732 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l--~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~  808 (922)
                      +..+++|+.+.+.++ .+...+....   +.+++.+.+  .++..+..++...                     +.. ..
T Consensus        99 ~~~l~~L~~l~l~~~-~l~~~~~~~~---~~~l~~l~~~~~~n~~l~~i~~~~---------------------~~~~~~  153 (242)
T d1xwdc1          99 FQNLPNLQYLLISNT-GIKHLPDVHK---IHSLQKVLLDIQDNINIHTIERNS---------------------FVGLSF  153 (242)
T ss_dssp             EECCTTCCEEEEESC-CCCSCCCCTT---TCBSSCEEEEEESCTTCCEECTTS---------------------STTSBS
T ss_pred             ccccccccccccchh-hhcccccccc---cccccccccccccccccccccccc---------------------cccccc
Confidence            234788888888886 3444443322   334444432  2334566664431                     122 34


Q ss_pred             CcceEeechhhhhhhcCCCCCCCCCCCCccEEEe-ecCCCcccchhHHhhcCCCCeEEEecccceEEecCCccccccceE
Q 002432          809 NLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEV-RDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKL  887 (922)
Q Consensus       809 ~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l-~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~~sL~~L  887 (922)
                      .++.|++++|++..+.+..+.    .++++.+.. ++|.++.+|.+.++++++|++|++++|++..+++..  +.+|..|
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~----~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~--~~~l~~L  227 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFN----GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKL  227 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTT----TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSS--CTTCCEE
T ss_pred             cceeeeccccccccccccccc----chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHH--HcCCccc
Confidence            788899999888776654433    345555554 448899999888889999999999999998886543  4556666


Q ss_pred             eccccccccccc
Q 002432          888 ELICLNDLEYLW  899 (922)
Q Consensus       888 ~i~~c~~L~~l~  899 (922)
                      ..-++.+++.+|
T Consensus       228 ~~l~~~~l~~lp  239 (242)
T d1xwdc1         228 RARSTYNLKKLP  239 (242)
T ss_dssp             ESSSEESSSCSC
T ss_pred             ccCcCCCCCcCC
Confidence            555566666665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.35  E-value=1.9e-12  Score=124.26  Aligned_cols=123  Identities=17%  Similarity=0.174  Sum_probs=69.4

Q ss_pred             EEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCcc-C-chhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEe
Q 002432          233 LLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS-L-PSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSL  308 (922)
Q Consensus       233 ~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~-l-p~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L  308 (922)
                      +++.+++...   .+|.++   ..++++|+|++|.|+. + +..|.++++|++|++++|.+..  +..+..+++|++|++
T Consensus        12 ~v~Cs~~~L~---~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          12 TVDCTGRGLK---EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             EEECTTSCCS---SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             EEEEeCCCcC---ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            4444444433   455433   2455666666666653 3 2345566666666666666554  355566666666666


Q ss_pred             ecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432          309 IESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       309 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      ++|+++.+|.. |.++++|++|++++|. +..+|++.|..+++|++|+|++|.+.
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCcccccccccccccc
Confidence            66666655433 5666666666666654 66665555566666666666655443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.2e-13  Score=136.48  Aligned_cols=102  Identities=22%  Similarity=0.223  Sum_probs=52.8

Q ss_pred             CcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC---ccccCCCCcCCEEEeecCCCc-ccchhhcCCCCCCEEeccC
Q 002432          258 LKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD---ITIIGKLKNLEILSLIESDIV-EFPEELGKLTKLRLLDLTN  333 (922)
Q Consensus       258 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~---p~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~  333 (922)
                      ...+.++...+...........+|++||+++|.+..   ...+..+++|++|++++|.++ ..+..++++++|++|++++
T Consensus        25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            344555444433322223344566666666665543   234556666666666666554 3344556666666666666


Q ss_pred             CCCCCccCcc-hhCCCCCCCEEEccCC
Q 002432          334 CFHLKVIAPN-VIASFTRLEELYMSNC  359 (922)
Q Consensus       334 ~~~l~~~p~~-~l~~L~~L~~L~L~~~  359 (922)
                      |..++...-. ...++++|++|++++|
T Consensus       105 c~~itd~~l~~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2         105 CSGFSEFALQTLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             CBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             cccccccccchhhHHHHhccccccccc
Confidence            5544432111 1234566666666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.34  E-value=2.2e-12  Score=123.88  Aligned_cols=127  Identities=21%  Similarity=0.277  Sum_probs=111.6

Q ss_pred             CcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC---ccccCCCCcCCEEEeecCCCcccc-hhhcCCCCCCEEeccC
Q 002432          258 LKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD---ITIIGKLKNLEILSLIESDIVEFP-EELGKLTKLRLLDLTN  333 (922)
Q Consensus       258 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~---p~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~  333 (922)
                      .++++.++++++.+|..+.  .++++|+|++|.|..   +..|.++++|++|++++|.+..++ ..+..+++|++|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4689999999999998775  689999999999975   477899999999999999999765 4588999999999999


Q ss_pred             CCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCC
Q 002432          334 CFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNA  400 (922)
Q Consensus       334 ~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  400 (922)
                      |. +..+|++.|.++++|++|+|++|.+..             .....+..+++|++|++++|....
T Consensus        88 N~-l~~l~~~~F~~l~~L~~L~L~~N~l~~-------------i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          88 NK-IKEISNKMFLGLHQLKTLNLYDNQISC-------------VMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CC-CCEECSSSSTTCTTCCEEECCSSCCCE-------------ECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cc-ccccCHHHHhCCCcccccccCCccccc-------------cCHHHhcCCccccccccccccccc
Confidence            86 999998889999999999999999884             334678899999999999987654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=7e-12  Score=125.69  Aligned_cols=97  Identities=13%  Similarity=0.254  Sum_probs=46.8

Q ss_pred             cEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEccCCCCCC---ccccCCCCcCCEEE
Q 002432          232 ELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYSTLGD---ITIIGKLKNLEILS  307 (922)
Q Consensus       232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~---p~~i~~L~~L~~L~  307 (922)
                      ++++.++....   .+|++++   +++++|++++|.|+.+|. .|.++++|++|++++|.+..   +..|.+++++++|+
T Consensus        11 ~~i~c~~~~l~---~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1          11 RVFLCQESKVT---EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             SEEEEESCSCS---SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE
T ss_pred             CEEEEeCCCCC---CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccc
Confidence            34444444333   4554332   345555555555555543 34555555555555555433   23445555555555


Q ss_pred             eec-CCCcccc-hhhcCCCCCCEEeccCC
Q 002432          308 LIE-SDIVEFP-EELGKLTKLRLLDLTNC  334 (922)
Q Consensus       308 L~~-~~l~~lp-~~i~~L~~L~~L~l~~~  334 (922)
                      +.. +++..++ ..+.++++|++|++.+|
T Consensus        85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          85 IEKANNLLYINPEAFQNLPNLQYLLISNT  113 (242)
T ss_dssp             EECCTTCCEECTTSEECCTTCCEEEEESC
T ss_pred             ccccccccccccccccccccccccccchh
Confidence            443 2343332 23455555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4.5e-13  Score=137.53  Aligned_cols=67  Identities=19%  Similarity=0.289  Sum_probs=32.9

Q ss_pred             cCCCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccc
Q 002432          651 VLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQ  718 (922)
Q Consensus       651 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~  718 (922)
                      .+++|++|++++|.+.+.....+ ..+++|++|++++|..+++......+.++++|++|+|++|.++.
T Consensus        69 ~c~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~  135 (284)
T d2astb2          69 QCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT  135 (284)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred             hCCCcccccccccCCCcHHHHHH-hcCCCCcCccccccccccccccchhhHHHHhccccccccccccc
Confidence            34555555555554332211111 12456666666666655542222234455666666666665543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=6.6e-13  Score=127.57  Aligned_cols=113  Identities=19%  Similarity=0.270  Sum_probs=84.7

Q ss_pred             CCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCC
Q 002432          246 NIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLT  324 (922)
Q Consensus       246 ~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~  324 (922)
                      .++.+ +..+++|++|+|++|.|+.++ .+..+++|++|++++|.+.. +..+..+.+|++|++++|+++.++ .+.+++
T Consensus        39 ~l~~s-l~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~  115 (198)
T d1m9la_          39 KMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLV  115 (198)
T ss_dssp             CCHHH-HHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHH
T ss_pred             hhhhH-HhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-cccccc
Confidence            34444 477888888888888888775 47888888888888888777 544455667888888888888764 477788


Q ss_pred             CCCEEeccCCCCCCccCc-chhCCCCCCCEEEccCCccc
Q 002432          325 KLRLLDLTNCFHLKVIAP-NVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       325 ~L~~L~l~~~~~l~~~p~-~~l~~L~~L~~L~L~~~~~~  362 (922)
                      +|++|++++|. ++.++. ..++.+++|+.|++++|.+.
T Consensus       116 ~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         116 NLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccccch-hccccccccccCCCccceeecCCCccc
Confidence            88888888875 666653 33778888888888888765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.12  E-value=6e-13  Score=127.87  Aligned_cols=141  Identities=21%  Similarity=0.269  Sum_probs=110.9

Q ss_pred             ceEEEeecC--CCCCCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEE
Q 002432          209 CYAISWIDS--SGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLC  285 (922)
Q Consensus       209 l~~L~l~~~--~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~  285 (922)
                      .+.+++.+.  .+..++..+ .+++|+.|++++|.+.   .++.  |..+++|++|++++|.++.+|..+..+.+|++|+
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~---~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE---KISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELW   99 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEES---CCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCC---Cccc--ccCCccccChhhcccccccccccccccccccccc
Confidence            344555443  233343333 7899999999999876   6653  5889999999999999999988777778999999


Q ss_pred             ccCCCCCCccccCCCCcCCEEEeecCCCcccc--hhhcCCCCCCEEeccCCCCCCccCcc----------hhCCCCCCCE
Q 002432          286 LDYSTLGDITIIGKLKNLEILSLIESDIVEFP--EELGKLTKLRLLDLTNCFHLKVIAPN----------VIASFTRLEE  353 (922)
Q Consensus       286 L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~~----------~l~~L~~L~~  353 (922)
                      +++|.++.++.+..+++|++|++++|+++.++  ..+..+++|++|++++|. +...+..          .+.++++|+.
T Consensus       100 l~~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~r~~vi~~lp~L~~  178 (198)
T d1m9la_         100 ISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             CSEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH-HHHHHCTTTTHHHHHHHHHHHCSSCCE
T ss_pred             cccccccccccccccccccccccccchhccccccccccCCCccceeecCCCc-cccCcccccchhhHHHHHHHHCCCcCE
Confidence            99999999767889999999999999999876  368999999999999985 4333221          2566888888


Q ss_pred             EE
Q 002432          354 LY  355 (922)
Q Consensus       354 L~  355 (922)
                      ||
T Consensus       179 LD  180 (198)
T d1m9la_         179 LD  180 (198)
T ss_dssp             ES
T ss_pred             eC
Confidence            86

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.7e-09  Score=96.44  Aligned_cols=103  Identities=17%  Similarity=0.158  Sum_probs=72.4

Q ss_pred             CcEEEeeCCcCccCchhhhccCCCCEEEccCCC-CCC--ccccCCCCcCCEEEeecCCCcccc-hhhcCCCCCCEEeccC
Q 002432          258 LKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYST-LGD--ITIIGKLKNLEILSLIESDIVEFP-EELGKLTKLRLLDLTN  333 (922)
Q Consensus       258 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~-l~~--p~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~  333 (922)
                      ...++.+++.+.+.|..+..+++|+.|++.+++ ++.  +..|.++++|+.|++++|+++.++ ..|..+++|++|++++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            345677777777777777777777777776654 665  366777778888888877777774 4477778888888877


Q ss_pred             CCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432          334 CFHLKVIAPNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       334 ~~~l~~~p~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      |. ++.+|.+.+.. .+|++|+|++|.+.
T Consensus        90 N~-l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NA-LESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             SC-CSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             CC-CcccChhhhcc-ccccccccCCCccc
Confidence            75 77777764433 36777777777653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3.9e-11  Score=132.97  Aligned_cols=104  Identities=21%  Similarity=0.256  Sum_probs=62.2

Q ss_pred             CccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc-----cCchhhhccCCCCEEEccCCCCCC--c----cccC
Q 002432          230 QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-----SLPSSIDLLVNLQTLCLDYSTLGD--I----TIIG  298 (922)
Q Consensus       230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~--p----~~i~  298 (922)
                      +|++|+++++....  .--..++..++++|+|+|++|+++     .+...+..+++|++|+|++|.|..  .    ..+.
T Consensus         3 ~l~~ld~~~~~i~~--~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSD--ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCH--HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCCh--HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            46667776665431  111233466777777777777665     234556677777777777777643  1    1221


Q ss_pred             -CCCcCCEEEeecCCCcc-----cchhhcCCCCCCEEeccCCC
Q 002432          299 -KLKNLEILSLIESDIVE-----FPEELGKLTKLRLLDLTNCF  335 (922)
Q Consensus       299 -~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~  335 (922)
                       ...+|++|++++|+++.     ++..+..+++|++|++++|.
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence             23467777777776652     34456667777777777764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=4.1e-09  Score=96.12  Aligned_cols=100  Identities=17%  Similarity=0.066  Sum_probs=62.2

Q ss_pred             cEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCC-cCccCc-hhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEE
Q 002432          232 ELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNM-QLFSLP-SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILS  307 (922)
Q Consensus       232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~-~i~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~  307 (922)
                      ..+++.++...   .+|..+ ..+++|+.|+++++ .++.++ ..|.++++|++|++++|+|+.  +..|..+++|++|+
T Consensus        11 ~~l~c~~~~~~---~~p~~l-~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3          11 SGLRCTRDGAL---DSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SCEECCSSCCC---TTTTTS-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CeEEecCCCCc---cCcccc-cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34444444333   444443 55666777777554 366664 356667777777777777665  45567777777777


Q ss_pred             eecCCCcccchhhcCCCCCCEEeccCCC
Q 002432          308 LIESDIVEFPEELGKLTKLRLLDLTNCF  335 (922)
Q Consensus       308 L~~~~l~~lp~~i~~L~~L~~L~l~~~~  335 (922)
                      |++|+++.+|.++....+|++|++++|.
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             ccCCCCcccChhhhccccccccccCCCc
Confidence            7777777776665444567777777764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2e-10  Score=127.03  Aligned_cols=105  Identities=21%  Similarity=0.308  Sum_probs=78.0

Q ss_pred             CCcEEEeeCCcCcc--CchhhhccCCCCEEEccCCCCCC--c----cccCCCCcCCEEEeecCCCcc-----cchhhc-C
Q 002432          257 ELKVVDLTNMQLFS--LPSSIDLLVNLQTLCLDYSTLGD--I----TIIGKLKNLEILSLIESDIVE-----FPEELG-K  322 (922)
Q Consensus       257 ~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~l~~--p----~~i~~L~~L~~L~L~~~~l~~-----lp~~i~-~  322 (922)
                      +|++||+++++++.  +.+-+..++++++|+|++|.++.  .    ..+..+++|++|||++|+++.     +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            58899999999984  34557788999999999999874  2    456788999999999998862     222232 2


Q ss_pred             CCCCCEEeccCCCCCCccC----cchhCCCCCCCEEEccCCccc
Q 002432          323 LTKLRLLDLTNCFHLKVIA----PNVIASFTRLEELYMSNCFVE  362 (922)
Q Consensus       323 L~~L~~L~l~~~~~l~~~p----~~~l~~L~~L~~L~L~~~~~~  362 (922)
                      ..+|++|++++|. ++...    ...+..+++|++|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCC-ccccccccccchhhccccccccccccccch
Confidence            3579999999885 65432    123677889999999888765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.51  E-value=1.2e-08  Score=107.47  Aligned_cols=135  Identities=16%  Similarity=0.080  Sum_probs=64.9

Q ss_pred             hCCCCCcEEEeeCCcCcc-----CchhhhccCCCCEEEccCCCCCC--ccc-------------cCCCCcCCEEEeecCC
Q 002432          253 TGMRELKVVDLTNMQLFS-----LPSSIDLLVNLQTLCLDYSTLGD--ITI-------------IGKLKNLEILSLIESD  312 (922)
Q Consensus       253 ~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~l~~--p~~-------------i~~L~~L~~L~L~~~~  312 (922)
                      ...++|+.|++++|.+..     +...+...++|++|++++|.+..  ...             ....+.|+.|++++|.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            445566666666665542     33344455666666666665432  100             1234456666666554


Q ss_pred             Cc-----ccchhhcCCCCCCEEeccCCCCCCcc-----CcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccC
Q 002432          313 IV-----EFPEELGKLTKLRLLDLTNCFHLKVI-----APNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDEL  382 (922)
Q Consensus       313 l~-----~lp~~i~~L~~L~~L~l~~~~~l~~~-----p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l  382 (922)
                      ++     .+...+.....|++|++++|. +..-     ....+...++|++|++++|.+..         .........+
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~---------~g~~~L~~~l  239 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH---------LGSSALAIAL  239 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH---------HHHHHHHHHG
T ss_pred             ccccccccccchhhhhhhhccccccccc-ccccccccchhhhhcchhhhcccccccccccc---------cccccccccc
Confidence            43     223334555566666666553 3321     11124455566666666555431         0001122334


Q ss_pred             CCCCCCCEEEeeecC
Q 002432          383 MPLPRLTTLEIAVEN  397 (922)
Q Consensus       383 ~~l~~L~~L~l~~~~  397 (922)
                      ...++|++|++++|.
T Consensus       240 ~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         240 KSWPNLRELGLNDCL  254 (344)
T ss_dssp             GGCTTCCEEECTTCC
T ss_pred             cccccchhhhhhcCc
Confidence            455556666665554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.37  E-value=7.1e-08  Score=101.40  Aligned_cols=184  Identities=17%  Similarity=0.177  Sum_probs=116.5

Q ss_pred             CcceEEEeecCCCCCCC-----CCC-CCCCccEEEccCCCCcCCC--CCC--------hHHhhCCCCCcEEEeeCCcCc-
Q 002432          207 KKCYAISWIDSSGGELP-----EGL-ECPQLELLLLSSEHSSVDV--NIP--------QRFFTGMRELKVVDLTNMQLF-  269 (922)
Q Consensus       207 ~~l~~L~l~~~~~~~l~-----~~~-~~~~Lr~L~l~~~~~~~~~--~l~--------~~~~~~l~~Lr~L~L~~~~i~-  269 (922)
                      ++++.|++.+|.+....     ... ..++|+.|++++|.....+  .+.        .......+.|++++++++.+. 
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc
Confidence            46788888888764321     111 5678888888887542100  000        001245678888888888765 


Q ss_pred             ----cCchhhhccCCCCEEEccCCCCCC--c-----cccCCCCcCCEEEeecCCCc-----ccchhhcCCCCCCEEeccC
Q 002432          270 ----SLPSSIDLLVNLQTLCLDYSTLGD--I-----TIIGKLKNLEILSLIESDIV-----EFPEELGKLTKLRLLDLTN  333 (922)
Q Consensus       270 ----~lp~~i~~L~~L~~L~L~~~~l~~--p-----~~i~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~  333 (922)
                          .+...+....+|++|++++|.+..  .     ..+..+++|++|++++|.++     .+...+...++|++|++++
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~  252 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  252 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhc
Confidence                244456677888888888888764  1     34667888888888888775     2455677888888888888


Q ss_pred             CCCCCccCcch----hCC--CCCCCEEEccCCcccccccccCCcccccccCcccCC-CCCCCCEEEeeecCCCC
Q 002432          334 CFHLKVIAPNV----IAS--FTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELM-PLPRLTTLEIAVENDNA  400 (922)
Q Consensus       334 ~~~l~~~p~~~----l~~--L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~  400 (922)
                      |. ++......    +..  -+.|++|++++|.+...         ........+. +.++|+.|++++|....
T Consensus       253 n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~---------~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         253 CL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD---------AVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH---------HHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             Cc-cCchhhHHHHHHhhhccCCCCCEEECCCCcCChH---------HHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            85 55422111    222  35688888888876520         0011223332 46678888888877543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=4.6e-07  Score=82.80  Aligned_cols=42  Identities=29%  Similarity=0.336  Sum_probs=21.2

Q ss_pred             hhCCCCCcEEEeeCCcCccCc---hhhhccCCCCEEEccCCCCCC
Q 002432          252 FTGMRELKVVDLTNMQLFSLP---SSIDLLVNLQTLCLDYSTLGD  293 (922)
Q Consensus       252 ~~~l~~Lr~L~L~~~~i~~lp---~~i~~L~~L~~L~L~~~~l~~  293 (922)
                      +.++++|++|+|++|.|+.++   ..+..+++|++|++++|.|+.
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~  105 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  105 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc
Confidence            344555555555555555432   234445555555555555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=9.4e-06  Score=73.78  Aligned_cols=100  Identities=23%  Similarity=0.143  Sum_probs=71.1

Q ss_pred             CCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCCc----cccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEE
Q 002432          255 MRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI----TIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLL  329 (922)
Q Consensus       255 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p----~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L  329 (922)
                      +..++.++...+.+..++....++++|++|+|++|+|+..    ..+..+++|++|++++|.++.++. ...+..+|+.|
T Consensus        41 ~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L  120 (162)
T d1koha1          41 QNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL  120 (162)
T ss_dssp             TTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSC
T ss_pred             ccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhcccccee
Confidence            3334444444444444455556789999999999998862    446789999999999999998865 23445679999


Q ss_pred             eccCCCCCCccCc-------chhCCCCCCCEEE
Q 002432          330 DLTNCFHLKVIAP-------NVIASFTRLEELY  355 (922)
Q Consensus       330 ~l~~~~~l~~~p~-------~~l~~L~~L~~L~  355 (922)
                      ++++|. +.....       ..+..+++|+.||
T Consensus       121 ~L~~Np-l~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         121 WLDGNS-LSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CCTTST-TSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             ecCCCC-cCcCcccchhHHHHHHHHCCCCCEEC
Confidence            999986 543322       2356789999987

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.74  E-value=0.0017  Score=58.56  Aligned_cols=60  Identities=10%  Similarity=0.089  Sum_probs=27.8

Q ss_pred             hhccCCCCEEEccCCCCCC--c----cccCCCCcCCEEEeecCCCcc-----cchhhcCCCCCCEEeccCC
Q 002432          275 IDLLVNLQTLCLDYSTLGD--I----TIIGKLKNLEILSLIESDIVE-----FPEELGKLTKLRLLDLTNC  334 (922)
Q Consensus       275 i~~L~~L~~L~L~~~~l~~--p----~~i~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~  334 (922)
                      +...++|++|+|++|.+..  .    ..+...+.|++|++++|.++.     +-..+..-+.|++|++++|
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            3344445555555554432  1    223334455555555554441     2233444455555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.74  E-value=0.00083  Score=60.71  Aligned_cols=81  Identities=10%  Similarity=0.053  Sum_probs=42.9

Q ss_pred             hCCCCCcEEEeeCCcCc-----cCchhhhccCCCCEEEccCCCCCC--c----cccCCCCcCCEEEeecCCCcc------
Q 002432          253 TGMRELKVVDLTNMQLF-----SLPSSIDLLVNLQTLCLDYSTLGD--I----TIIGKLKNLEILSLIESDIVE------  315 (922)
Q Consensus       253 ~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~--p----~~i~~L~~L~~L~L~~~~l~~------  315 (922)
                      ...+.|+.|++++|.+.     .+...+...+.|++|++++|.+..  .    ..+..-+.|++|+++++.+..      
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~  120 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE  120 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHH
Confidence            44556666666666554     123344455666666666666553  1    345555666666666554332      


Q ss_pred             --cchhhcCCCCCCEEeccC
Q 002432          316 --FPEELGKLTKLRLLDLTN  333 (922)
Q Consensus       316 --lp~~i~~L~~L~~L~l~~  333 (922)
                        +...+..-+.|+.|+++.
T Consensus       121 ~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_         121 MDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHhCCCccEeeCcC
Confidence              222333445555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.14  E-value=0.0025  Score=57.43  Aligned_cols=80  Identities=16%  Similarity=0.178  Sum_probs=40.5

Q ss_pred             hCCCCCcEEEeeCC-cCc-----cCchhhhccCCCCEEEccCCCCCC--c----cccCCCCcCCEEEeecCCCc-----c
Q 002432          253 TGMRELKVVDLTNM-QLF-----SLPSSIDLLVNLQTLCLDYSTLGD--I----TIIGKLKNLEILSLIESDIV-----E  315 (922)
Q Consensus       253 ~~l~~Lr~L~L~~~-~i~-----~lp~~i~~L~~L~~L~L~~~~l~~--p----~~i~~L~~L~~L~L~~~~l~-----~  315 (922)
                      .+.+.|+.|+++++ .++     .+-..+...++|+.|++++|.+..  .    ..+...++++.++++++.+.     .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            44556666666552 333     122334455566666666665543  1    23444556666666655443     2


Q ss_pred             cchhhcCCCCCCEEecc
Q 002432          316 FPEELGKLTKLRLLDLT  332 (922)
Q Consensus       316 lp~~i~~L~~L~~L~l~  332 (922)
                      +-..+...++|+.+++.
T Consensus        94 l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          94 LVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHGGGGCSSCCEEECC
T ss_pred             HHHHHHhCccccEEeec
Confidence            23344555556555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.19  E-value=0.008  Score=53.89  Aligned_cols=108  Identities=16%  Similarity=0.114  Sum_probs=73.4

Q ss_pred             CCCCccEEEccCCC-CcCCC-CCChHHhhCCCCCcEEEeeCCcCc-----cCchhhhccCCCCEEEccCCCCCC--c---
Q 002432          227 ECPQLELLLLSSEH-SSVDV-NIPQRFFTGMRELKVVDLTNMQLF-----SLPSSIDLLVNLQTLCLDYSTLGD--I---  294 (922)
Q Consensus       227 ~~~~Lr~L~l~~~~-~~~~~-~l~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~--p---  294 (922)
                      ..+.|+.|++++.. +...+ .--...+...++|+.|++++|.+.     .+-..+...+.++.+++++|.+..  .   
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            34677888887632 21100 001122357889999999999876     244466778899999999999865  1   


Q ss_pred             -cccCCCCcCCEEEee--cCCCc-----ccchhhcCCCCCCEEeccCC
Q 002432          295 -TIIGKLKNLEILSLI--ESDIV-----EFPEELGKLTKLRLLDLTNC  334 (922)
Q Consensus       295 -~~i~~L~~L~~L~L~--~~~l~-----~lp~~i~~L~~L~~L~l~~~  334 (922)
                       ..+...++|+.++|.  +|.+.     .+...+.+.++|++|++..+
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence             667788999886665  45554     34556677888888888664